Query 009036
Match_columns 546
No_of_seqs 344 out of 2671
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 19:38:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 3E-26 6.4E-31 269.8 31.7 280 226-507 12-314 (2102)
2 PLN03200 cellulose synthase-in 99.9 3.8E-25 8.2E-30 260.5 32.0 282 225-510 444-769 (2102)
3 KOG4224 Armadillo repeat prote 99.9 2.6E-25 5.6E-30 217.5 19.7 294 226-528 125-422 (550)
4 KOG4224 Armadillo repeat prote 99.9 5.2E-24 1.1E-28 208.4 20.0 280 225-509 165-450 (550)
5 KOG0166 Karyopherin (importin) 99.9 3E-23 6.5E-28 216.3 25.0 282 225-508 107-396 (514)
6 KOG0166 Karyopherin (importin) 99.9 8.4E-21 1.8E-25 198.1 23.4 306 221-529 146-463 (514)
7 PF04564 U-box: U-box domain; 99.9 1E-22 2.2E-27 161.4 5.2 73 42-114 1-73 (73)
8 COG5064 SRP1 Karyopherin (impo 99.8 2.2E-20 4.7E-25 181.8 16.8 281 224-507 111-400 (526)
9 COG5064 SRP1 Karyopherin (impo 99.8 2E-19 4.3E-24 175.1 15.9 291 228-528 72-374 (526)
10 PF05804 KAP: Kinesin-associat 99.8 1.4E-16 2.9E-21 175.2 29.1 298 226-527 289-681 (708)
11 PF05804 KAP: Kinesin-associat 99.8 3.4E-17 7.4E-22 179.9 23.2 215 287-507 267-481 (708)
12 KOG1048 Neural adherens juncti 99.7 2.6E-16 5.5E-21 169.4 18.6 280 225-507 231-597 (717)
13 KOG2122 Beta-catenin-binding p 99.7 2.7E-16 5.9E-21 175.0 18.1 261 244-508 314-604 (2195)
14 smart00504 Ubox Modified RING 99.7 1.3E-17 2.8E-22 128.7 5.4 63 45-108 1-63 (63)
15 KOG4199 Uncharacterized conser 99.7 1.4E-14 3.1E-19 141.4 25.8 279 225-505 143-444 (461)
16 KOG4199 Uncharacterized conser 99.6 7.8E-13 1.7E-17 129.4 25.8 267 237-508 117-406 (461)
17 PF04826 Arm_2: Armadillo-like 99.5 6.5E-13 1.4E-17 130.5 20.8 193 265-463 8-205 (254)
18 KOG2122 Beta-catenin-binding p 99.5 1.7E-13 3.7E-18 153.1 17.2 286 227-512 235-566 (2195)
19 PF04826 Arm_2: Armadillo-like 99.5 4.6E-12 1E-16 124.5 21.8 192 225-421 10-207 (254)
20 PF10508 Proteasom_PSMB: Prote 99.4 7.9E-11 1.7E-15 127.9 28.9 278 227-509 77-370 (503)
21 KOG1048 Neural adherens juncti 99.4 7.5E-11 1.6E-15 127.7 22.8 281 226-507 274-686 (717)
22 PF15227 zf-C3HC4_4: zinc fing 99.3 8E-13 1.7E-17 92.4 3.2 39 48-86 1-42 (42)
23 PF10508 Proteasom_PSMB: Prote 99.3 6.6E-10 1.4E-14 120.8 25.7 274 232-511 43-325 (503)
24 PLN03208 E3 ubiquitin-protein 99.2 8.2E-12 1.8E-16 114.9 4.3 63 39-101 12-89 (193)
25 KOG1222 Kinesin associated pro 99.2 1.5E-09 3.2E-14 110.9 20.8 293 226-522 303-690 (791)
26 cd00020 ARM Armadillo/beta-cat 99.2 5.4E-10 1.2E-14 96.7 13.3 117 264-380 2-120 (120)
27 TIGR00599 rad18 DNA repair pro 99.2 3.8E-11 8.3E-16 123.6 6.4 72 40-112 21-92 (397)
28 cd00020 ARM Armadillo/beta-cat 99.1 7.5E-10 1.6E-14 95.8 13.3 115 305-419 2-120 (120)
29 KOG4500 Rho/Rac GTPase guanine 99.1 4.8E-09 1E-13 106.1 19.8 283 225-508 85-434 (604)
30 KOG1222 Kinesin associated pro 99.1 1.2E-09 2.6E-14 111.6 15.4 176 287-464 281-456 (791)
31 cd00256 VATPase_H VATPase_H, r 99.1 1.6E-08 3.4E-13 106.0 22.5 275 228-504 102-424 (429)
32 PRK09687 putative lyase; Provi 99.1 9.9E-09 2.1E-13 103.0 19.2 221 228-502 55-279 (280)
33 PRK09687 putative lyase; Provi 99.1 1.7E-08 3.6E-13 101.3 20.3 224 227-504 23-249 (280)
34 PF03224 V-ATPase_H_N: V-ATPas 99.0 2.4E-08 5.1E-13 102.3 19.7 246 251-498 34-307 (312)
35 KOG0946 ER-Golgi vesicle-tethe 99.0 1.5E-07 3.3E-12 101.5 26.1 279 225-507 20-348 (970)
36 PF13923 zf-C3HC4_2: Zinc fing 99.0 3.6E-10 7.9E-15 77.9 2.8 38 48-86 1-39 (39)
37 KOG4642 Chaperone-dependent E3 98.9 5.9E-10 1.3E-14 105.0 4.3 78 38-115 204-281 (284)
38 PRK13800 putative oxidoreducta 98.9 4.1E-07 8.9E-12 105.8 25.2 228 225-503 619-865 (897)
39 PF13445 zf-RING_UBOX: RING-ty 98.8 1.4E-09 3.1E-14 75.9 2.2 31 48-79 1-35 (43)
40 KOG4500 Rho/Rac GTPase guanine 98.8 2.8E-07 6.1E-12 93.6 19.2 279 225-505 221-519 (604)
41 PF00097 zf-C3HC4: Zinc finger 98.8 3.9E-09 8.5E-14 73.6 3.1 39 48-86 1-41 (41)
42 KOG0168 Putative ubiquitin fus 98.8 6.4E-07 1.4E-11 97.5 20.9 258 227-488 167-438 (1051)
43 PF11789 zf-Nse: Zinc-finger o 98.8 3E-09 6.5E-14 79.3 2.3 43 44-86 10-54 (57)
44 PF03224 V-ATPase_H_N: V-ATPas 98.8 3.5E-07 7.5E-12 93.7 17.9 222 230-453 61-304 (312)
45 PF14835 zf-RING_6: zf-RING of 98.8 1.9E-09 4.2E-14 80.3 0.8 59 44-105 6-65 (65)
46 KOG0287 Postreplication repair 98.7 6.1E-09 1.3E-13 101.6 2.8 69 41-110 19-87 (442)
47 PRK13800 putative oxidoreducta 98.7 3.4E-06 7.5E-11 98.2 24.4 227 226-502 651-896 (897)
48 KOG2759 Vacuolar H+-ATPase V1 98.6 4.2E-06 9.2E-11 85.3 19.9 270 229-504 116-437 (442)
49 KOG2160 Armadillo/beta-catenin 98.6 3.2E-06 7E-11 85.0 18.7 182 237-419 93-282 (342)
50 KOG2177 Predicted E3 ubiquitin 98.6 2.8E-08 6.1E-13 101.1 4.1 72 41-115 9-80 (386)
51 KOG2160 Armadillo/beta-catenin 98.6 9.5E-06 2.1E-10 81.7 20.8 181 280-463 94-282 (342)
52 KOG2973 Uncharacterized conser 98.6 1.5E-05 3.3E-10 78.2 21.3 272 228-505 4-315 (353)
53 KOG0823 Predicted E3 ubiquitin 98.5 3.8E-08 8.3E-13 92.4 3.0 58 43-100 45-104 (230)
54 KOG2171 Karyopherin (importin) 98.5 5.7E-06 1.2E-10 93.5 20.6 243 226-472 347-604 (1075)
55 PF13920 zf-C3HC4_3: Zinc fing 98.5 6.8E-08 1.5E-12 70.5 2.7 47 44-91 1-48 (50)
56 KOG0168 Putative ubiquitin fus 98.5 5.9E-06 1.3E-10 90.2 18.4 253 273-537 171-441 (1051)
57 PHA02929 N1R/p28-like protein; 98.5 1.1E-07 2.3E-12 91.8 4.1 49 42-91 171-227 (238)
58 COG5432 RAD18 RING-finger-cont 98.4 1.1E-07 2.4E-12 91.2 3.2 71 41-112 21-91 (391)
59 KOG0320 Predicted E3 ubiquitin 98.4 1.9E-07 4.2E-12 83.9 3.9 53 44-97 130-184 (187)
60 cd00162 RING RING-finger (Real 98.4 3.2E-07 7E-12 64.7 3.7 43 47-89 1-44 (45)
61 PF13639 zf-RING_2: Ring finge 98.4 1.3E-07 2.9E-12 66.9 1.7 40 47-87 2-44 (44)
62 smart00184 RING Ring finger. E 98.4 3.3E-07 7.2E-12 62.3 3.3 39 48-86 1-39 (39)
63 PF01602 Adaptin_N: Adaptin N 98.4 3.4E-05 7.4E-10 84.7 20.8 255 226-506 113-370 (526)
64 KOG3678 SARM protein (with ste 98.3 3.6E-05 7.8E-10 79.2 18.8 262 225-506 178-453 (832)
65 PF01602 Adaptin_N: Adaptin N 98.3 3.5E-05 7.7E-10 84.5 20.2 251 228-507 80-335 (526)
66 KOG4646 Uncharacterized conser 98.3 5.1E-06 1.1E-10 72.0 10.0 154 348-504 13-169 (173)
67 KOG1293 Proteins containing ar 98.3 7.4E-05 1.6E-09 80.1 19.4 141 363-506 389-534 (678)
68 cd00256 VATPase_H VATPase_H, r 98.3 0.00044 9.5E-09 72.9 25.0 233 269-503 53-306 (429)
69 KOG4646 Uncharacterized conser 98.2 9.4E-06 2E-10 70.4 10.2 130 271-400 18-149 (173)
70 KOG2734 Uncharacterized conser 98.2 0.00062 1.3E-08 70.0 24.5 272 226-504 124-434 (536)
71 TIGR02270 conserved hypothetic 98.2 0.00019 4.2E-09 75.7 21.9 211 228-507 87-298 (410)
72 KOG1293 Proteins containing ar 98.2 0.00014 3E-09 78.0 20.2 161 280-440 388-557 (678)
73 KOG0317 Predicted E3 ubiquitin 98.2 1.2E-06 2.5E-11 85.0 4.0 54 41-95 235-288 (293)
74 TIGR00570 cdk7 CDK-activating 98.2 2.2E-06 4.7E-11 85.2 5.9 53 44-96 2-59 (309)
75 PHA02926 zinc finger-like prot 98.1 1.8E-06 3.8E-11 80.7 3.2 56 41-98 166-235 (242)
76 KOG0946 ER-Golgi vesicle-tethe 98.1 0.00015 3.3E-09 79.0 17.5 213 271-486 24-264 (970)
77 KOG0311 Predicted E3 ubiquitin 98.1 7.5E-07 1.6E-11 88.2 0.1 68 41-108 39-108 (381)
78 KOG2042 Ubiquitin fusion degra 98.1 3.9E-06 8.4E-11 94.1 5.6 72 40-112 865-937 (943)
79 PF14634 zf-RING_5: zinc-RING 98.1 2.9E-06 6.4E-11 60.0 3.1 41 47-88 1-44 (44)
80 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00061 1.3E-08 71.1 21.4 256 249-507 5-271 (371)
81 PTZ00429 beta-adaptin; Provisi 98.1 0.00094 2E-08 75.5 24.0 252 228-506 33-286 (746)
82 KOG4159 Predicted E3 ubiquitin 98.0 3.1E-06 6.8E-11 87.6 3.2 73 39-112 78-155 (398)
83 PF05536 Neurochondrin: Neuroc 98.0 0.00033 7.1E-09 76.8 18.3 211 311-529 6-241 (543)
84 KOG2023 Nuclear transport rece 98.0 0.0002 4.4E-09 76.7 15.5 284 226-511 127-469 (885)
85 PF05536 Neurochondrin: Neuroc 97.9 0.00068 1.5E-08 74.4 19.4 231 226-462 4-260 (543)
86 KOG2973 Uncharacterized conser 97.9 0.0005 1.1E-08 67.8 16.2 234 271-511 5-279 (353)
87 COG5369 Uncharacterized conser 97.9 0.00013 2.8E-09 76.5 12.7 261 244-504 406-740 (743)
88 PTZ00429 beta-adaptin; Provisi 97.9 0.0032 6.9E-08 71.3 24.5 183 227-418 140-325 (746)
89 KOG2164 Predicted E3 ubiquitin 97.9 7.1E-06 1.5E-10 85.5 3.2 56 44-99 185-244 (513)
90 KOG2171 Karyopherin (importin) 97.9 0.0018 3.9E-08 73.9 22.0 259 238-504 260-548 (1075)
91 KOG0297 TNF receptor-associate 97.8 1.6E-05 3.6E-10 83.4 3.5 67 41-108 17-85 (391)
92 COG5574 PEX10 RING-finger-cont 97.7 2.4E-05 5.3E-10 75.0 3.2 50 43-92 213-263 (271)
93 COG5222 Uncharacterized conser 97.7 5E-05 1.1E-09 73.5 5.3 67 46-112 275-343 (427)
94 PF00514 Arm: Armadillo/beta-c 97.7 7.4E-05 1.6E-09 51.9 4.7 40 258-297 1-40 (41)
95 PF14664 RICTOR_N: Rapamycin-i 97.7 0.018 3.9E-07 60.2 24.3 269 229-504 27-363 (371)
96 PF10165 Ric8: Guanine nucleot 97.6 0.003 6.5E-08 67.8 18.4 259 248-507 2-339 (446)
97 KOG3678 SARM protein (with ste 97.6 0.00064 1.4E-08 70.2 12.5 112 240-351 235-348 (832)
98 COG1413 FOG: HEAT repeat [Ener 97.6 0.0069 1.5E-07 62.5 20.6 182 227-460 43-239 (335)
99 PF12678 zf-rbx1: RING-H2 zinc 97.6 5.6E-05 1.2E-09 59.7 3.7 39 48-87 22-73 (73)
100 KOG2660 Locus-specific chromos 97.6 3.1E-05 6.7E-10 76.6 2.7 67 41-108 11-82 (331)
101 COG5113 UFD2 Ubiquitin fusion 97.6 7.7E-05 1.7E-09 79.1 5.7 73 40-113 849-922 (929)
102 PF12348 CLASP_N: CLASP N term 97.6 0.00036 7.9E-09 67.9 9.4 178 237-419 17-206 (228)
103 KOG0978 E3 ubiquitin ligase in 97.5 3.3E-05 7.1E-10 84.5 1.8 55 43-97 641-695 (698)
104 PF00514 Arm: Armadillo/beta-c 97.5 0.00014 3E-09 50.5 3.9 40 341-380 2-41 (41)
105 KOG2759 Vacuolar H+-ATPase V1 97.5 0.03 6.5E-07 57.8 21.9 218 269-488 65-302 (442)
106 PF13646 HEAT_2: HEAT repeats; 97.4 0.0008 1.7E-08 54.7 8.7 86 271-376 1-88 (88)
107 COG1413 FOG: HEAT repeat [Ener 97.4 0.011 2.3E-07 61.1 18.3 191 269-504 43-241 (335)
108 KOG1242 Protein containing ada 97.4 0.0076 1.6E-07 64.9 16.7 219 266-503 210-442 (569)
109 KOG4413 26S proteasome regulat 97.3 0.021 4.5E-07 57.0 18.2 236 270-509 83-337 (524)
110 KOG4413 26S proteasome regulat 97.3 0.04 8.7E-07 55.1 19.9 244 229-476 84-345 (524)
111 KOG2734 Uncharacterized conser 97.3 0.053 1.1E-06 56.3 21.4 255 247-506 104-401 (536)
112 KOG0212 Uncharacterized conser 97.3 0.018 3.9E-07 61.2 18.3 257 238-508 178-447 (675)
113 PF13646 HEAT_2: HEAT repeats; 97.3 0.0015 3.1E-08 53.2 8.4 86 229-335 1-88 (88)
114 KOG2023 Nuclear transport rece 97.3 0.011 2.5E-07 63.8 16.9 172 268-439 127-307 (885)
115 KOG1242 Protein containing ada 97.3 0.033 7.1E-07 60.1 20.1 221 227-463 216-444 (569)
116 TIGR02270 conserved hypothetic 97.2 0.022 4.7E-07 60.3 18.8 181 226-463 116-296 (410)
117 KOG0212 Uncharacterized conser 97.2 0.0097 2.1E-07 63.2 15.7 278 228-510 125-411 (675)
118 KOG1813 Predicted E3 ubiquitin 97.2 0.00016 3.4E-09 70.5 2.4 57 46-104 242-298 (313)
119 COG5369 Uncharacterized conser 97.2 0.0061 1.3E-07 64.3 13.5 194 289-485 409-617 (743)
120 KOG1789 Endocytosis protein RM 97.1 0.14 3E-06 58.3 22.9 252 231-488 1775-2142(2235)
121 PF12348 CLASP_N: CLASP N term 97.0 0.011 2.3E-07 57.5 13.0 183 320-510 17-211 (228)
122 PF10165 Ric8: Guanine nucleot 97.0 0.08 1.7E-06 56.9 20.7 238 225-465 20-339 (446)
123 COG5152 Uncharacterized conser 96.9 0.00032 7E-09 64.1 1.3 43 46-89 197-239 (259)
124 KOG4367 Predicted Zn-finger pr 96.9 0.00032 6.9E-09 71.3 1.0 32 43-74 2-33 (699)
125 KOG1789 Endocytosis protein RM 96.9 0.027 5.9E-07 63.6 15.7 136 327-464 1742-1884(2235)
126 COG5231 VMA13 Vacuolar H+-ATPa 96.9 0.039 8.4E-07 55.0 15.0 232 272-505 152-428 (432)
127 KOG1059 Vesicle coat complex A 96.9 0.15 3.3E-06 55.9 20.6 139 311-463 257-401 (877)
128 PF13764 E3_UbLigase_R4: E3 ub 96.8 0.19 4.2E-06 57.3 22.3 236 264-508 112-409 (802)
129 KOG3039 Uncharacterized conser 96.8 0.00072 1.6E-08 64.0 2.2 35 42-76 40-74 (303)
130 KOG0824 Predicted E3 ubiquitin 96.8 0.0008 1.7E-08 65.8 2.6 47 47-93 9-55 (324)
131 smart00185 ARM Armadillo/beta- 96.8 0.0029 6.2E-08 43.3 4.7 38 260-297 3-40 (41)
132 KOG1517 Guanine nucleotide bin 96.8 0.061 1.3E-06 61.1 17.2 177 243-419 486-671 (1387)
133 KOG2259 Uncharacterized conser 96.7 0.019 4.2E-07 62.0 12.8 252 228-504 199-474 (823)
134 KOG1062 Vesicle coat complex A 96.7 0.12 2.7E-06 57.3 18.7 65 434-508 353-418 (866)
135 KOG1002 Nucleotide excision re 96.7 0.00078 1.7E-08 70.2 2.0 51 43-93 534-588 (791)
136 smart00185 ARM Armadillo/beta- 96.7 0.0038 8.3E-08 42.7 4.8 39 342-380 3-41 (41)
137 KOG2879 Predicted E3 ubiquitin 96.7 0.0019 4.2E-08 62.4 4.2 48 44-91 238-287 (298)
138 KOG1241 Karyopherin (importin) 96.6 0.22 4.7E-06 55.1 19.5 272 228-508 130-438 (859)
139 KOG0802 E3 ubiquitin ligase [P 96.5 0.0011 2.4E-08 73.1 2.0 46 42-88 288-338 (543)
140 PF12861 zf-Apc11: Anaphase-pr 96.5 0.0027 5.8E-08 50.9 3.4 49 43-91 30-82 (85)
141 KOG0289 mRNA splicing factor [ 96.4 0.0027 5.8E-08 65.1 3.7 52 46-98 1-53 (506)
142 COG5096 Vesicle coat complex, 96.4 0.13 2.8E-06 57.8 16.7 166 236-419 28-195 (757)
143 KOG0213 Splicing factor 3b, su 96.3 0.26 5.7E-06 54.3 18.2 260 225-507 797-1067(1172)
144 PF11841 DUF3361: Domain of un 96.3 0.081 1.7E-06 48.1 12.3 124 385-509 4-135 (160)
145 KOG1824 TATA-binding protein-i 96.3 0.2 4.3E-06 56.6 17.5 265 231-507 9-288 (1233)
146 PF09759 Atx10homo_assoc: Spin 96.3 0.023 5.1E-07 47.6 8.1 67 407-474 3-70 (102)
147 KOG4628 Predicted E3 ubiquitin 96.2 0.0033 7.1E-08 63.9 3.1 46 46-91 230-278 (348)
148 KOG2259 Uncharacterized conser 96.2 0.028 6E-07 60.9 10.0 239 271-526 200-461 (823)
149 PF04063 DUF383: Domain of unk 96.2 0.056 1.2E-06 51.1 11.0 118 366-486 10-157 (192)
150 KOG2979 Protein involved in DN 96.2 0.0048 1.1E-07 59.3 3.8 44 44-87 175-220 (262)
151 PF13513 HEAT_EZ: HEAT-like re 96.1 0.0099 2.1E-07 43.8 4.7 55 324-378 1-55 (55)
152 KOG1059 Vesicle coat complex A 96.1 1.5 3.2E-05 48.6 22.6 213 227-463 144-365 (877)
153 PF11841 DUF3361: Domain of un 96.0 0.18 3.8E-06 45.9 12.9 116 346-464 6-132 (160)
154 COG5240 SEC21 Vesicle coat com 96.0 0.74 1.6E-05 49.6 19.0 68 229-299 266-333 (898)
155 PF04641 Rtf2: Rtf2 RING-finge 96.0 0.006 1.3E-07 60.7 3.7 54 42-97 110-167 (260)
156 COG5181 HSH155 U2 snRNP splice 95.9 0.62 1.3E-05 50.5 18.3 263 225-508 602-873 (975)
157 KOG1061 Vesicle coat complex A 95.9 0.1 2.2E-06 57.7 13.0 71 226-299 120-190 (734)
158 KOG1062 Vesicle coat complex A 95.9 0.54 1.2E-05 52.4 18.2 257 230-506 110-397 (866)
159 KOG1077 Vesicle coat complex A 95.9 1 2.2E-05 49.7 19.8 244 231-495 150-423 (938)
160 KOG1248 Uncharacterized conser 95.9 0.31 6.8E-06 56.4 16.8 217 280-506 665-899 (1176)
161 KOG1517 Guanine nucleotide bin 95.8 0.36 7.8E-06 55.2 16.7 194 308-504 510-731 (1387)
162 PF09759 Atx10homo_assoc: Spin 95.8 0.043 9.3E-07 46.1 7.4 61 451-511 3-65 (102)
163 COG5540 RING-finger-containing 95.8 0.0065 1.4E-07 59.5 2.9 47 46-92 324-373 (374)
164 KOG3036 Protein involved in ce 95.7 0.54 1.2E-05 45.5 15.2 147 243-390 95-257 (293)
165 PF13513 HEAT_EZ: HEAT-like re 95.6 0.02 4.4E-07 42.1 4.5 55 283-337 1-55 (55)
166 KOG0826 Predicted E3 ubiquitin 95.6 0.01 2.2E-07 58.9 3.5 50 41-91 296-346 (357)
167 PF04063 DUF383: Domain of unk 95.6 0.062 1.3E-06 50.8 8.7 110 282-391 8-143 (192)
168 KOG1060 Vesicle coat complex A 95.5 1.4 3.1E-05 49.1 19.6 206 230-463 38-246 (968)
169 PF05004 IFRD: Interferon-rela 95.5 1 2.3E-05 45.9 17.8 190 314-508 47-260 (309)
170 KOG1241 Karyopherin (importin) 95.4 0.92 2E-05 50.4 17.8 152 227-381 364-531 (859)
171 KOG1078 Vesicle coat complex C 95.2 0.85 1.8E-05 50.8 16.5 260 226-505 244-532 (865)
172 KOG4151 Myosin assembly protei 95.2 1.1 2.4E-05 50.1 17.6 235 258-500 493-736 (748)
173 KOG2999 Regulator of Rac1, req 95.1 0.38 8.1E-06 51.5 13.2 158 353-511 85-248 (713)
174 KOG0804 Cytoplasmic Zn-finger 95.1 0.014 3.1E-07 60.2 2.7 43 46-91 176-222 (493)
175 COG5096 Vesicle coat complex, 95.1 0.26 5.6E-06 55.5 12.6 141 227-380 55-195 (757)
176 KOG3039 Uncharacterized conser 95.0 0.02 4.3E-07 54.5 3.3 53 44-97 220-276 (303)
177 PF11698 V-ATPase_H_C: V-ATPas 94.9 0.069 1.5E-06 46.1 5.9 71 226-296 42-113 (119)
178 KOG1645 RING-finger-containing 94.8 0.016 3.4E-07 59.2 2.2 67 46-112 5-80 (463)
179 PF12719 Cnd3: Nuclear condens 94.8 1 2.3E-05 45.7 15.4 188 269-463 26-233 (298)
180 COG5181 HSH155 U2 snRNP splice 94.8 0.2 4.2E-06 54.2 10.1 227 270-504 605-847 (975)
181 KOG0213 Splicing factor 3b, su 94.8 0.26 5.7E-06 54.3 11.3 145 353-506 801-955 (1172)
182 KOG3036 Protein involved in ce 94.7 2.1 4.5E-05 41.6 16.0 143 287-429 97-257 (293)
183 COG5231 VMA13 Vacuolar H+-ATPa 94.6 2 4.2E-05 43.3 15.9 218 240-461 162-426 (432)
184 KOG0567 HEAT repeat-containing 94.6 1.6 3.5E-05 42.8 15.0 232 230-504 6-279 (289)
185 PF13764 E3_UbLigase_R4: E3 ub 94.5 4.5 9.7E-05 46.5 20.7 214 226-443 116-387 (802)
186 PF12755 Vac14_Fab1_bd: Vacuol 94.4 0.15 3.3E-06 42.6 6.7 68 310-378 27-94 (97)
187 PF12031 DUF3518: Domain of un 94.4 0.14 3E-06 49.4 7.2 87 406-494 140-234 (257)
188 COG5243 HRD1 HRD ubiquitin lig 94.4 0.037 8.1E-07 55.7 3.5 47 43-90 285-344 (491)
189 KOG1788 Uncharacterized conser 94.3 0.93 2E-05 51.9 14.2 263 248-518 663-996 (2799)
190 KOG2999 Regulator of Rac1, req 94.2 1.2 2.6E-05 47.7 14.4 149 312-463 85-242 (713)
191 KOG3161 Predicted E3 ubiquitin 94.2 0.026 5.6E-07 60.6 2.2 65 42-107 8-78 (861)
192 KOG1077 Vesicle coat complex A 94.2 6 0.00013 43.9 19.8 222 271-505 331-587 (938)
193 PF04078 Rcd1: Cell differenti 94.1 2.6 5.6E-05 41.5 15.6 190 240-429 8-228 (262)
194 KOG1824 TATA-binding protein-i 94.1 1.9 4.2E-05 49.1 16.3 224 227-463 47-286 (1233)
195 PF12717 Cnd1: non-SMC mitotic 93.9 3 6.5E-05 38.8 15.4 93 240-340 1-93 (178)
196 PF07814 WAPL: Wings apart-lik 93.9 3.2 6.8E-05 43.4 17.0 240 226-475 20-311 (361)
197 PF08569 Mo25: Mo25-like; Int 93.8 2.3 4.9E-05 43.9 15.4 194 226-421 75-285 (335)
198 PF04078 Rcd1: Cell differenti 93.8 1.7 3.6E-05 42.8 13.5 148 364-511 8-174 (262)
199 KOG1001 Helicase-like transcri 93.7 0.013 2.9E-07 65.4 -1.0 46 46-92 455-501 (674)
200 PF14668 RICTOR_V: Rapamycin-i 93.6 0.32 7E-06 38.2 6.8 64 368-431 4-70 (73)
201 PF08045 CDC14: Cell division 93.6 0.67 1.4E-05 45.7 10.6 94 244-337 108-205 (257)
202 KOG1240 Protein kinase contain 93.6 2.3 5E-05 49.7 16.0 253 240-507 436-727 (1431)
203 KOG1061 Vesicle coat complex A 93.5 1.5 3.2E-05 48.9 14.1 141 269-421 49-191 (734)
204 KOG2611 Neurochondrin/leucine- 93.4 6.8 0.00015 41.6 17.8 207 315-528 16-253 (698)
205 COG5215 KAP95 Karyopherin (imp 93.4 8.9 0.00019 41.7 18.9 268 229-507 135-439 (858)
206 PF08569 Mo25: Mo25-like; Int 93.3 7.5 0.00016 40.1 18.2 200 306-508 72-286 (335)
207 COG5215 KAP95 Karyopherin (imp 93.2 1.9 4E-05 46.6 13.7 166 280-460 16-204 (858)
208 PF12719 Cnd3: Nuclear condens 93.2 4.5 9.7E-05 41.0 16.5 167 229-403 28-208 (298)
209 KOG2611 Neurochondrin/leucine- 93.0 5.9 0.00013 42.1 16.6 143 276-418 18-181 (698)
210 PF08324 PUL: PUL domain; Int 92.9 0.82 1.8E-05 45.5 10.4 160 271-430 65-242 (268)
211 KOG0567 HEAT repeat-containing 92.9 6.5 0.00014 38.7 15.8 193 226-462 66-279 (289)
212 PF12717 Cnd1: non-SMC mitotic 92.8 0.62 1.3E-05 43.5 8.8 93 282-381 1-93 (178)
213 KOG3113 Uncharacterized conser 92.7 0.095 2.1E-06 50.2 3.1 51 43-96 109-163 (293)
214 PF06025 DUF913: Domain of Unk 92.6 11 0.00024 39.7 18.6 98 265-362 101-207 (379)
215 PF06371 Drf_GBD: Diaphanous G 92.5 0.97 2.1E-05 42.2 9.9 110 227-338 66-186 (187)
216 KOG1060 Vesicle coat complex A 92.2 7.4 0.00016 43.8 16.9 158 358-529 294-484 (968)
217 PF12755 Vac14_Fab1_bd: Vacuol 92.2 1.2 2.5E-05 37.3 8.7 70 430-504 26-96 (97)
218 PF05004 IFRD: Interferon-rela 92.1 7.3 0.00016 39.8 16.3 180 280-463 54-257 (309)
219 PF11698 V-ATPase_H_C: V-ATPas 91.9 0.36 7.7E-06 41.7 5.4 71 432-504 44-114 (119)
220 KOG4151 Myosin assembly protei 91.8 2.2 4.7E-05 47.9 12.6 198 300-505 494-699 (748)
221 KOG0414 Chromosome condensatio 91.4 8.2 0.00018 45.3 16.9 122 270-405 920-1048(1251)
222 PF06371 Drf_GBD: Diaphanous G 91.3 0.56 1.2E-05 43.8 6.7 75 385-462 100-186 (187)
223 PF02891 zf-MIZ: MIZ/SP-RING z 91.3 0.18 4E-06 36.5 2.6 43 46-88 3-49 (50)
224 smart00744 RINGv The RING-vari 91.2 0.22 4.7E-06 35.9 2.9 41 47-87 1-49 (49)
225 COG5240 SEC21 Vesicle coat com 91.1 18 0.00039 39.5 17.8 68 272-341 267-334 (898)
226 KOG0827 Predicted E3 ubiquitin 90.9 0.15 3.2E-06 51.9 2.4 50 43-92 2-57 (465)
227 KOG3800 Predicted E3 ubiquitin 90.8 0.16 3.6E-06 49.8 2.5 46 47-92 2-52 (300)
228 PF06025 DUF913: Domain of Unk 90.7 12 0.00026 39.4 16.4 97 309-405 105-209 (379)
229 PF08045 CDC14: Cell division 90.5 3.3 7.1E-05 40.9 11.3 97 407-505 108-207 (257)
230 KOG1039 Predicted E3 ubiquitin 90.3 0.17 3.8E-06 51.8 2.3 48 43-90 159-220 (344)
231 KOG2933 Uncharacterized conser 90.3 1.5 3.3E-05 43.9 8.7 141 226-377 87-231 (334)
232 PF02985 HEAT: HEAT repeat; I 90.1 0.55 1.2E-05 30.1 3.8 29 270-298 1-29 (31)
233 KOG1785 Tyrosine kinase negati 90.0 0.14 3E-06 52.2 1.2 45 47-91 371-416 (563)
234 KOG2817 Predicted E3 ubiquitin 89.9 0.25 5.5E-06 50.7 3.1 43 44-86 333-380 (394)
235 KOG0211 Protein phosphatase 2A 89.8 13 0.00028 42.5 16.7 264 230-505 358-625 (759)
236 KOG0825 PHD Zn-finger protein 89.6 0.09 1.9E-06 57.8 -0.4 37 41-77 92-135 (1134)
237 KOG1248 Uncharacterized conser 89.5 5.2 0.00011 46.9 13.3 178 235-419 705-898 (1176)
238 KOG1058 Vesicle coat complex C 89.4 19 0.00042 40.5 16.9 104 269-381 243-347 (948)
239 KOG2025 Chromosome condensatio 89.3 8.3 0.00018 42.9 14.0 115 269-390 85-200 (892)
240 PF11701 UNC45-central: Myosin 89.1 1.3 2.9E-05 40.4 6.9 103 234-337 50-157 (157)
241 KOG0301 Phospholipase A2-activ 88.9 16 0.00035 40.4 15.8 162 275-443 550-728 (745)
242 PF02985 HEAT: HEAT repeat; I 88.8 0.77 1.7E-05 29.4 3.7 28 353-380 2-29 (31)
243 KOG4692 Predicted E3 ubiquitin 88.3 0.34 7.4E-06 48.7 2.6 38 40-77 415-454 (489)
244 PF14570 zf-RING_4: RING/Ubox 88.2 0.44 9.6E-06 34.0 2.4 43 48-90 1-47 (48)
245 KOG1991 Nuclear transport rece 87.8 39 0.00084 39.3 18.4 133 268-402 409-557 (1010)
246 KOG1820 Microtubule-associated 87.8 11 0.00023 43.5 14.4 177 230-417 256-441 (815)
247 PF05918 API5: Apoptosis inhib 87.7 7.3 0.00016 42.8 12.5 101 226-337 22-123 (556)
248 KOG2274 Predicted importin 9 [ 87.5 11 0.00025 43.0 13.9 220 281-507 462-691 (1005)
249 KOG4653 Uncharacterized conser 87.4 13 0.00029 42.2 14.3 218 277-504 735-963 (982)
250 PF08324 PUL: PUL domain; Int 87.3 3.9 8.5E-05 40.6 9.7 186 313-499 66-268 (268)
251 KOG1734 Predicted RING-contain 87.3 0.18 3.8E-06 48.9 -0.0 49 44-92 223-282 (328)
252 KOG1058 Vesicle coat complex C 87.1 12 0.00027 41.9 13.6 96 231-337 103-199 (948)
253 KOG1943 Beta-tubulin folding c 87.1 46 0.001 39.0 18.6 245 227-497 341-603 (1133)
254 KOG4172 Predicted E3 ubiquitin 86.9 0.19 4.1E-06 36.4 -0.1 44 47-90 9-53 (62)
255 PF11701 UNC45-central: Myosin 86.8 1.7 3.7E-05 39.6 6.2 141 271-415 5-155 (157)
256 PF12460 MMS19_C: RNAPII trans 86.7 9.3 0.0002 40.7 12.7 110 270-382 272-396 (415)
257 PF10363 DUF2435: Protein of u 86.5 2.8 6.1E-05 34.5 6.7 71 227-299 3-73 (92)
258 cd03569 VHS_Hrs_Vps27p VHS dom 86.2 3.7 8E-05 36.8 7.9 74 226-299 40-115 (142)
259 KOG4464 Signaling protein RIC- 86.0 49 0.0011 34.8 17.4 102 240-341 110-233 (532)
260 COG5627 MMS21 DNA repair prote 85.7 0.55 1.2E-05 44.7 2.3 56 45-100 189-248 (275)
261 PF11793 FANCL_C: FANCL C-term 85.4 0.15 3.3E-06 39.7 -1.3 46 45-90 2-65 (70)
262 PF12530 DUF3730: Protein of u 85.3 38 0.00083 33.0 17.4 134 271-418 2-150 (234)
263 KOG1240 Protein kinase contain 84.9 22 0.00048 42.1 14.8 222 271-511 424-691 (1431)
264 PF14447 Prok-RING_4: Prokaryo 84.7 0.6 1.3E-05 34.2 1.6 45 46-93 8-52 (55)
265 KOG1571 Predicted E3 ubiquitin 84.7 0.57 1.2E-05 47.6 2.1 47 40-90 300-346 (355)
266 COG5209 RCD1 Uncharacterized p 84.5 2.8 6.2E-05 40.1 6.4 105 407-511 117-224 (315)
267 KOG0883 Cyclophilin type, U bo 84.5 0.68 1.5E-05 47.3 2.5 52 45-98 40-92 (518)
268 cd03561 VHS VHS domain family; 84.4 5.7 0.00012 35.1 8.2 74 226-299 36-113 (133)
269 cd03568 VHS_STAM VHS domain fa 84.2 5.2 0.00011 35.9 7.9 74 226-299 36-111 (144)
270 KOG2032 Uncharacterized conser 84.1 65 0.0014 34.7 19.1 160 223-386 254-421 (533)
271 COG5209 RCD1 Uncharacterized p 83.8 4.7 0.0001 38.7 7.5 105 242-347 115-226 (315)
272 KOG1967 DNA repair/transcripti 83.7 7.8 0.00017 44.3 10.4 189 222-413 810-1018(1030)
273 KOG1788 Uncharacterized conser 83.5 12 0.00026 43.5 11.6 241 236-486 476-784 (2799)
274 COG5175 MOT2 Transcriptional r 83.1 0.77 1.7E-05 45.9 2.2 51 43-94 13-67 (480)
275 PF12460 MMS19_C: RNAPII trans 83.0 21 0.00045 38.0 13.3 187 311-507 190-396 (415)
276 KOG1943 Beta-tubulin folding c 82.8 46 0.001 39.1 16.1 242 269-528 341-596 (1133)
277 KOG0828 Predicted E3 ubiquitin 82.6 0.73 1.6E-05 48.5 1.9 51 42-92 568-635 (636)
278 PRK14707 hypothetical protein; 82.6 1.2E+02 0.0025 38.7 19.8 243 223-471 201-453 (2710)
279 KOG0915 Uncharacterized conser 82.5 73 0.0016 39.0 17.9 261 238-508 1009-1309(1702)
280 KOG4653 Uncharacterized conser 82.2 9.2 0.0002 43.5 10.1 174 318-506 735-919 (982)
281 KOG4362 Transcriptional regula 82.0 0.58 1.3E-05 51.8 1.0 65 44-108 20-86 (684)
282 PF14726 RTTN_N: Rotatin, an a 82.0 11 0.00025 31.3 8.5 94 242-335 2-96 (98)
283 KOG2956 CLIP-associating prote 81.7 60 0.0013 34.7 15.3 183 227-418 286-476 (516)
284 cd03567 VHS_GGA VHS domain fam 81.7 8.2 0.00018 34.5 8.0 73 226-298 37-116 (139)
285 PF14668 RICTOR_V: Rapamycin-i 81.6 7.3 0.00016 30.6 6.7 65 407-474 4-68 (73)
286 KOG0211 Protein phosphatase 2A 81.3 36 0.00079 39.0 14.8 169 231-405 240-411 (759)
287 KOG1078 Vesicle coat complex C 81.2 92 0.002 35.5 17.2 68 270-341 246-313 (865)
288 PF07814 WAPL: Wings apart-lik 81.0 71 0.0015 33.4 16.1 230 270-506 22-297 (361)
289 KOG4535 HEAT and armadillo rep 80.8 3.1 6.7E-05 44.1 5.7 176 285-463 407-603 (728)
290 KOG3665 ZYG-1-like serine/thre 80.8 21 0.00046 40.7 12.8 89 374-464 494-588 (699)
291 COG5109 Uncharacterized conser 80.5 1.3 2.7E-05 44.1 2.6 43 44-86 335-382 (396)
292 KOG4185 Predicted E3 ubiquitin 80.0 1.5 3.3E-05 44.3 3.2 63 46-108 4-77 (296)
293 PF08167 RIX1: rRNA processing 80.0 14 0.00031 33.8 9.4 108 311-419 26-143 (165)
294 smart00288 VHS Domain present 79.6 9.6 0.00021 33.7 7.8 73 226-298 36-111 (133)
295 PRK14707 hypothetical protein; 79.5 1.9E+02 0.0042 37.0 21.1 218 224-443 370-595 (2710)
296 PF05918 API5: Apoptosis inhib 79.1 14 0.00031 40.5 10.4 98 226-335 58-158 (556)
297 PF11707 Npa1: Ribosome 60S bi 78.5 44 0.00096 34.4 13.5 155 229-383 58-240 (330)
298 PF12031 DUF3518: Domain of un 78.5 5.5 0.00012 38.7 6.1 81 325-405 139-229 (257)
299 KOG0301 Phospholipase A2-activ 77.9 46 0.001 37.0 13.5 159 240-403 557-727 (745)
300 KOG1493 Anaphase-promoting com 77.5 0.9 2E-05 35.4 0.5 49 42-90 28-80 (84)
301 KOG2025 Chromosome condensatio 77.3 43 0.00093 37.6 13.1 112 310-428 85-199 (892)
302 PF00790 VHS: VHS domain; Int 76.4 9.8 0.00021 33.9 7.0 73 226-298 41-118 (140)
303 KOG3665 ZYG-1-like serine/thre 75.9 38 0.00082 38.7 13.0 195 292-503 494-695 (699)
304 KOG1814 Predicted E3 ubiquitin 75.5 3.1 6.7E-05 43.1 3.8 34 44-77 183-219 (445)
305 KOG4535 HEAT and armadillo rep 74.7 82 0.0018 33.9 13.8 269 240-518 268-572 (728)
306 KOG1967 DNA repair/transcripti 74.5 11 0.00024 43.2 8.0 146 226-374 866-1018(1030)
307 KOG0396 Uncharacterized conser 74.4 1.5 3.2E-05 44.8 1.2 51 44-94 329-382 (389)
308 PF10272 Tmpp129: Putative tra 74.3 2.2 4.7E-05 44.2 2.4 37 58-94 301-354 (358)
309 KOG0414 Chromosome condensatio 74.2 35 0.00077 40.3 12.0 138 353-507 921-1066(1251)
310 COG5219 Uncharacterized conser 74.0 1.7 3.6E-05 49.4 1.6 45 46-90 1470-1522(1525)
311 PF14446 Prok-RING_1: Prokaryo 74.0 2.7 5.8E-05 30.8 2.1 32 46-80 6-41 (54)
312 PF11865 DUF3385: Domain of un 73.4 43 0.00092 30.6 10.5 145 350-503 9-155 (160)
313 KOG0825 PHD Zn-finger protein 72.8 4.6 9.9E-05 45.1 4.4 46 46-92 124-172 (1134)
314 PF10367 Vps39_2: Vacuolar sor 72.7 1.1 2.5E-05 37.6 -0.1 35 39-73 72-108 (109)
315 PF14225 MOR2-PAG1_C: Cell mor 72.6 1.1E+02 0.0023 30.5 17.6 213 228-462 8-253 (262)
316 KOG2062 26S proteasome regulat 72.6 1.8E+02 0.0039 33.1 18.0 123 315-461 524-651 (929)
317 KOG1940 Zn-finger protein [Gen 72.5 2.7 5.7E-05 41.8 2.4 43 45-88 158-204 (276)
318 KOG4275 Predicted E3 ubiquitin 72.0 0.9 2E-05 44.7 -0.9 38 45-89 300-340 (350)
319 KOG2032 Uncharacterized conser 71.8 34 0.00074 36.7 10.4 153 267-420 252-416 (533)
320 cd03569 VHS_Hrs_Vps27p VHS dom 71.7 20 0.00044 32.0 7.8 71 269-339 41-114 (142)
321 KOG2956 CLIP-associating prote 71.4 1.4E+02 0.003 32.2 14.5 171 282-463 300-477 (516)
322 KOG0298 DEAD box-containing he 71.1 1.4 2.9E-05 51.9 0.1 45 42-87 1150-1195(1394)
323 KOG3002 Zn finger protein [Gen 71.0 4.4 9.5E-05 41.0 3.7 61 41-108 44-105 (299)
324 KOG4464 Signaling protein RIC- 69.4 1.6E+02 0.0034 31.2 18.7 278 227-506 45-403 (532)
325 PF01347 Vitellogenin_N: Lipop 69.2 42 0.00092 37.6 11.6 155 226-403 394-569 (618)
326 smart00638 LPD_N Lipoprotein N 68.6 2E+02 0.0043 32.0 18.4 205 269-500 311-540 (574)
327 KOG1820 Microtubule-associated 67.9 79 0.0017 36.7 13.1 176 274-463 258-443 (815)
328 KOG1991 Nuclear transport rece 67.8 2.5E+02 0.0055 33.0 20.9 232 227-465 410-673 (1010)
329 KOG1243 Protein kinase [Genera 67.4 53 0.0011 36.8 11.1 250 236-505 263-515 (690)
330 KOG0915 Uncharacterized conser 67.4 2.2E+02 0.0049 35.1 16.6 261 240-505 970-1265(1702)
331 PF04641 Rtf2: Rtf2 RING-finge 67.4 4.3 9.3E-05 40.4 2.7 36 43-78 32-68 (260)
332 COG5194 APC11 Component of SCF 67.2 4.5 9.8E-05 31.9 2.2 42 47-89 33-79 (88)
333 PF11707 Npa1: Ribosome 60S bi 67.1 1.6E+02 0.0034 30.3 19.1 151 271-421 58-239 (330)
334 smart00638 LPD_N Lipoprotein N 66.6 2.1E+02 0.0046 31.7 17.3 130 311-459 394-541 (574)
335 PF12530 DUF3730: Protein of u 66.3 1.3E+02 0.0029 29.2 16.9 151 232-401 5-168 (234)
336 PF08167 RIX1: rRNA processing 66.1 27 0.00058 32.0 7.6 108 270-380 26-143 (165)
337 cd03568 VHS_STAM VHS domain fa 65.5 30 0.00066 31.0 7.6 72 431-505 37-110 (144)
338 PF11865 DUF3385: Domain of un 65.2 55 0.0012 29.9 9.4 141 310-461 10-155 (160)
339 PF01347 Vitellogenin_N: Lipop 64.9 1.1E+02 0.0023 34.4 13.7 167 270-460 396-586 (618)
340 KOG1566 Conserved protein Mo25 64.3 1.7E+02 0.0037 29.8 15.4 195 226-421 78-288 (342)
341 cd03572 ENTH_epsin_related ENT 64.2 26 0.00057 30.5 6.6 72 432-506 39-120 (122)
342 cd03561 VHS VHS domain family; 64.1 28 0.0006 30.7 7.0 71 269-339 37-112 (133)
343 PF11864 DUF3384: Domain of un 63.7 2.2E+02 0.0048 30.8 22.0 277 227-521 27-347 (464)
344 PF05605 zf-Di19: Drought indu 63.5 7.6 0.00016 28.4 2.8 33 44-88 1-39 (54)
345 PF10363 DUF2435: Protein of u 63.5 24 0.00053 29.0 6.0 69 313-382 6-74 (92)
346 PF05290 Baculo_IE-1: Baculovi 63.4 8.7 0.00019 33.6 3.4 50 43-92 78-133 (140)
347 KOG2137 Protein kinase [Signal 63.0 33 0.00071 38.5 8.5 132 269-405 389-521 (700)
348 KOG1020 Sister chromatid cohes 62.9 81 0.0018 38.6 12.1 140 310-461 816-958 (1692)
349 COG5218 YCG1 Chromosome conden 62.5 38 0.00083 37.2 8.7 106 269-381 91-197 (885)
350 KOG2274 Predicted importin 9 [ 61.7 3.2E+02 0.0069 32.0 18.7 151 310-463 530-689 (1005)
351 PF14500 MMS19_N: Dos2-interac 61.5 1.8E+02 0.0038 29.0 17.0 206 234-463 6-237 (262)
352 cd03567 VHS_GGA VHS domain fam 61.0 29 0.00063 31.0 6.5 70 269-338 38-115 (139)
353 PF14500 MMS19_N: Dos2-interac 60.5 1.8E+02 0.004 28.8 14.1 217 273-507 3-239 (262)
354 PLN02189 cellulose synthase 60.2 6 0.00013 46.2 2.5 46 46-91 35-87 (1040)
355 PLN02195 cellulose synthase A 59.9 6.9 0.00015 45.4 2.9 45 47-91 8-59 (977)
356 KOG1812 Predicted E3 ubiquitin 59.7 5.8 0.00013 41.8 2.1 33 45-77 146-182 (384)
357 PRK11088 rrmA 23S rRNA methylt 58.6 4.4 9.5E-05 40.5 1.0 27 45-71 2-31 (272)
358 PF06844 DUF1244: Protein of u 56.3 6.9 0.00015 29.7 1.4 13 66-78 11-23 (68)
359 PF11791 Aconitase_B_N: Aconit 55.4 15 0.00033 33.0 3.7 29 312-340 96-124 (154)
360 cd00197 VHS_ENTH_ANTH VHS, ENT 55.0 73 0.0016 27.0 8.0 71 226-296 36-113 (115)
361 PF14726 RTTN_N: Rotatin, an a 54.9 1.2E+02 0.0026 25.3 8.7 64 392-458 30-95 (98)
362 cd00730 rubredoxin Rubredoxin; 53.9 6.2 0.00013 28.5 0.8 15 39-53 28-42 (50)
363 KOG4265 Predicted E3 ubiquitin 53.8 8.4 0.00018 39.4 2.0 47 45-92 290-337 (349)
364 KOG1020 Sister chromatid cohes 53.2 1.2E+02 0.0027 37.1 11.4 109 269-384 816-925 (1692)
365 PF14666 RICTOR_M: Rapamycin-i 53.0 2.3E+02 0.0049 27.6 14.3 128 364-505 77-225 (226)
366 smart00288 VHS Domain present 52.4 45 0.00097 29.4 6.3 70 269-338 37-110 (133)
367 KOG2114 Vacuolar assembly/sort 51.6 8.4 0.00018 43.7 1.8 41 44-88 839-880 (933)
368 COG5218 YCG1 Chromosome conden 51.2 3E+02 0.0065 30.6 13.0 112 310-428 91-205 (885)
369 KOG0314 Predicted E3 ubiquitin 51.1 7.4 0.00016 41.3 1.2 69 40-110 214-286 (448)
370 COG5220 TFB3 Cdk activating ki 50.3 6 0.00013 38.0 0.4 46 44-89 9-62 (314)
371 COG5656 SXM1 Importin, protein 50.0 4.5E+02 0.0098 30.2 16.7 122 268-391 407-539 (970)
372 PF10521 DUF2454: Protein of u 50.0 1.4E+02 0.0031 29.8 10.3 68 270-337 120-201 (282)
373 PF04821 TIMELESS: Timeless pr 49.7 2E+02 0.0044 28.5 11.2 84 424-507 102-210 (266)
374 PF00096 zf-C2H2: Zinc finger, 49.6 6 0.00013 23.0 0.2 14 46-59 1-14 (23)
375 cd00197 VHS_ENTH_ANTH VHS, ENT 49.3 1E+02 0.0022 26.0 8.0 70 432-504 38-114 (115)
376 PLN02436 cellulose synthase A 48.4 12 0.00026 43.9 2.5 46 46-91 37-89 (1094)
377 KOG2933 Uncharacterized conser 48.3 2.2E+02 0.0048 29.0 10.8 140 353-504 90-233 (334)
378 KOG4739 Uncharacterized protei 47.5 5.4 0.00012 38.6 -0.4 40 56-98 15-55 (233)
379 PF00301 Rubredoxin: Rubredoxi 47.5 7.5 0.00016 27.7 0.4 14 40-53 29-42 (47)
380 KOG2137 Protein kinase [Signal 47.5 98 0.0021 34.9 9.1 128 227-363 389-520 (700)
381 PF06685 DUF1186: Protein of u 47.4 2.9E+02 0.0063 27.2 14.1 71 390-472 71-151 (249)
382 PF13251 DUF4042: Domain of un 47.1 2.5E+02 0.0053 26.3 10.6 106 312-420 42-175 (182)
383 COG5098 Chromosome condensatio 46.7 66 0.0014 36.2 7.4 110 271-381 301-416 (1128)
384 PLN02638 cellulose synthase A 46.3 14 0.0003 43.5 2.5 46 46-91 18-70 (1079)
385 PF08746 zf-RING-like: RING-li 46.1 26 0.00057 24.4 3.0 39 48-86 1-43 (43)
386 KOG2062 26S proteasome regulat 45.9 73 0.0016 36.1 7.7 70 269-346 554-625 (929)
387 PF13251 DUF4042: Domain of un 45.6 1.9E+02 0.004 27.1 9.5 137 243-381 2-175 (182)
388 cd03565 VHS_Tom1 VHS domain fa 45.4 1.2E+02 0.0027 26.9 8.0 73 226-298 37-115 (141)
389 PF14225 MOR2-PAG1_C: Cell mor 45.0 3.3E+02 0.0071 27.1 18.5 173 310-503 60-252 (262)
390 PF00790 VHS: VHS domain; Int 44.5 55 0.0012 29.0 5.7 71 432-505 43-118 (140)
391 KOG1832 HIV-1 Vpr-binding prot 44.3 1.6E+02 0.0036 34.2 10.1 180 244-433 575-787 (1516)
392 PF14569 zf-UDP: Zinc-binding 44.1 29 0.00063 27.4 3.2 46 46-91 10-62 (80)
393 PLN03205 ATR interacting prote 44.1 2.2E+02 0.0047 30.0 10.3 102 281-382 384-518 (652)
394 PF06685 DUF1186: Protein of u 43.2 3.4E+02 0.0073 26.8 11.9 38 391-428 110-152 (249)
395 PF08506 Cse1: Cse1; InterPro 42.6 4.2E+02 0.0092 27.8 13.4 140 228-375 211-370 (370)
396 PF05883 Baculo_RING: Baculovi 42.1 18 0.00039 31.9 2.0 33 45-77 26-67 (134)
397 PF04499 SAPS: SIT4 phosphatas 42.0 2.5E+02 0.0055 30.5 11.2 111 392-506 21-150 (475)
398 PF12463 DUF3689: Protein of u 41.8 3.9E+02 0.0086 27.2 13.2 122 345-466 3-176 (303)
399 KOG1815 Predicted E3 ubiquitin 41.7 25 0.00053 37.9 3.5 36 43-78 68-104 (444)
400 cd08050 TAF6 TATA Binding Prot 41.4 1.4E+02 0.0031 30.9 8.9 102 229-340 180-298 (343)
401 PF10521 DUF2454: Protein of u 41.1 1.5E+02 0.0032 29.7 8.8 70 311-380 120-203 (282)
402 PF06012 DUF908: Domain of Unk 40.8 1.1E+02 0.0023 31.5 7.9 68 406-473 238-307 (329)
403 COG5098 Chromosome condensatio 40.7 1.3E+02 0.0029 33.9 8.6 111 394-509 301-420 (1128)
404 COG5656 SXM1 Importin, protein 40.6 6.2E+02 0.014 29.1 17.2 135 226-362 407-553 (970)
405 PF08389 Xpo1: Exportin 1-like 40.6 1.2E+02 0.0025 26.4 7.2 62 352-414 83-148 (148)
406 PF04821 TIMELESS: Timeless pr 40.2 3.8E+02 0.0083 26.6 11.9 144 262-425 33-194 (266)
407 PLN02915 cellulose synthase A 40.0 19 0.00041 42.3 2.3 46 46-91 16-68 (1044)
408 PF13894 zf-C2H2_4: C2H2-type 39.6 12 0.00025 21.5 0.4 13 46-58 1-13 (24)
409 PLN03205 ATR interacting prote 39.0 60 0.0013 34.0 5.4 108 270-378 324-444 (652)
410 KOG2930 SCF ubiquitin ligase, 38.6 23 0.00049 29.6 2.0 26 62-88 80-105 (114)
411 COG3809 Uncharacterized protei 38.3 5.8 0.00013 31.2 -1.4 11 46-56 2-12 (88)
412 PF12830 Nipped-B_C: Sister ch 37.7 3.4E+02 0.0074 25.2 12.5 141 270-420 9-168 (187)
413 KOG1941 Acetylcholine receptor 37.6 15 0.00033 37.8 1.0 44 44-87 364-412 (518)
414 PF14353 CpXC: CpXC protein 37.5 27 0.00058 30.5 2.4 46 45-90 1-48 (128)
415 PF06012 DUF908: Domain of Unk 36.8 99 0.0021 31.8 6.9 64 325-388 237-305 (329)
416 PF04064 DUF384: Domain of unk 36.2 1.2E+02 0.0026 22.7 5.4 50 458-508 2-52 (58)
417 PF14663 RasGEF_N_2: Rapamycin 35.9 2.1E+02 0.0045 24.5 7.7 40 352-391 9-48 (115)
418 PHA03096 p28-like protein; Pro 35.2 23 0.0005 35.6 1.8 43 46-88 179-231 (284)
419 cd00350 rubredoxin_like Rubred 34.5 36 0.00078 22.1 2.1 9 81-89 18-26 (33)
420 PLN03076 ARF guanine nucleotid 34.2 1.1E+03 0.025 30.3 18.2 272 238-518 1148-1502(1780)
421 PHA02825 LAP/PHD finger-like p 33.2 57 0.0012 29.6 3.8 47 44-91 7-59 (162)
422 KOG4231 Intracellular membrane 32.9 70 0.0015 34.6 4.9 70 269-338 328-398 (763)
423 cd08050 TAF6 TATA Binding Prot 32.9 3E+02 0.0065 28.5 9.7 107 311-417 211-338 (343)
424 cd03565 VHS_Tom1 VHS domain fa 32.6 2.8E+02 0.006 24.7 8.2 72 432-505 39-115 (141)
425 COG3492 Uncharacterized protei 32.5 23 0.00049 28.7 1.0 13 66-78 42-54 (104)
426 KOG2038 CAATT-binding transcri 32.3 7.8E+02 0.017 28.5 12.8 162 288-462 230-408 (988)
427 KOG4718 Non-SMC (structural ma 32.0 27 0.00058 33.1 1.6 41 47-88 183-224 (235)
428 COG1592 Rubrerythrin [Energy p 31.9 33 0.00071 31.5 2.1 25 45-89 134-158 (166)
429 COG5236 Uncharacterized conser 31.7 42 0.00092 34.1 3.0 47 43-89 59-106 (493)
430 PLN02400 cellulose synthase 31.3 25 0.00055 41.4 1.6 46 46-91 37-89 (1085)
431 KOG2549 Transcription initiati 31.1 5.8E+02 0.013 28.2 11.4 137 274-419 212-370 (576)
432 PF13811 DUF4186: Domain of un 31.0 33 0.00073 29.0 1.8 45 57-110 64-110 (111)
433 PF10571 UPF0547: Uncharacteri 30.8 27 0.00058 21.5 0.9 8 48-55 3-10 (26)
434 COG3813 Uncharacterized protei 30.1 51 0.0011 25.6 2.5 36 62-100 26-61 (84)
435 KOG2462 C2H2-type Zn-finger pr 30.0 60 0.0013 32.2 3.6 62 40-106 156-236 (279)
436 PF11864 DUF3384: Domain of un 29.6 7.4E+02 0.016 26.7 16.0 91 284-380 230-330 (464)
437 KOG0392 SNF2 family DNA-depend 29.6 7.4E+02 0.016 30.4 12.6 228 226-463 76-325 (1549)
438 COG2176 PolC DNA polymerase II 29.5 52 0.0011 39.2 3.6 59 21-91 890-950 (1444)
439 PF11791 Aconitase_B_N: Aconit 29.5 88 0.0019 28.3 4.3 25 478-502 96-120 (154)
440 PF12231 Rif1_N: Rap1-interact 29.5 3.6E+02 0.0079 28.2 9.8 139 364-505 59-204 (372)
441 KOG2549 Transcription initiati 29.4 6.2E+02 0.013 28.0 11.3 141 312-462 209-369 (576)
442 KOG2199 Signal transducing ada 29.2 2.4E+02 0.0052 29.6 7.8 73 226-298 44-118 (462)
443 PF12830 Nipped-B_C: Sister ch 29.1 1.9E+02 0.0042 26.9 7.0 67 433-507 10-76 (187)
444 PF03130 HEAT_PBS: PBS lyase H 29.1 38 0.00082 20.8 1.4 26 326-361 1-26 (27)
445 PF14663 RasGEF_N_2: Rapamycin 29.0 1.4E+02 0.0031 25.5 5.5 39 270-308 9-47 (115)
446 PF04388 Hamartin: Hamartin pr 28.9 7.1E+02 0.015 28.4 12.6 134 227-380 4-140 (668)
447 cd03572 ENTH_epsin_related ENT 28.6 2.1E+02 0.0045 24.9 6.4 52 226-277 37-90 (122)
448 KOG2011 Sister chromatid cohes 28.5 4.5E+02 0.0098 31.4 10.9 133 237-377 297-432 (1048)
449 PF12906 RINGv: RING-variant d 28.3 33 0.00072 24.3 1.2 39 48-86 1-47 (47)
450 PF14631 FancD2: Fanconi anaem 28.3 2.8E+02 0.0061 34.6 9.7 135 277-416 443-578 (1426)
451 KOG1566 Conserved protein Mo25 28.2 6.7E+02 0.014 25.7 21.0 197 264-464 74-287 (342)
452 COG5116 RPN2 26S proteasome re 27.6 2.5E+02 0.0054 31.1 8.0 30 269-298 551-581 (926)
453 PRK04023 DNA polymerase II lar 27.2 55 0.0012 38.3 3.3 68 40-113 620-695 (1121)
454 COG5116 RPN2 26S proteasome re 27.1 1.8E+02 0.004 32.1 6.9 65 271-341 518-583 (926)
455 PF12231 Rif1_N: Rap1-interact 26.9 6.8E+02 0.015 26.1 11.3 172 280-462 4-203 (372)
456 PLN03076 ARF guanine nucleotid 26.4 4.3E+02 0.0093 33.8 10.9 151 225-380 1083-1253(1780)
457 smart00734 ZnF_Rad18 Rad18-lik 25.7 29 0.00063 21.3 0.5 9 47-55 3-11 (26)
458 KOG2842 Interferon-related pro 25.5 8.2E+02 0.018 25.8 13.3 66 312-377 105-174 (427)
459 PF07800 DUF1644: Protein of u 25.4 31 0.00066 31.3 0.7 20 44-63 1-20 (162)
460 PF12463 DUF3689: Protein of u 25.2 7.4E+02 0.016 25.2 13.1 121 263-383 3-176 (303)
461 KOG1087 Cytosolic sorting prot 25.2 1.7E+02 0.0037 31.7 6.4 71 226-296 37-110 (470)
462 PF08216 CTNNBL: Catenin-beta- 24.8 93 0.002 26.4 3.5 41 287-327 64-104 (108)
463 PF06416 DUF1076: Protein of u 24.4 67 0.0014 27.3 2.5 53 39-92 33-92 (113)
464 PF12874 zf-met: Zinc-finger o 24.3 28 0.0006 20.5 0.2 15 46-60 1-15 (25)
465 PF04499 SAPS: SIT4 phosphatas 23.9 3.9E+02 0.0086 29.1 9.0 39 467-505 337-377 (475)
466 KOG0006 E3 ubiquitin-protein l 23.8 48 0.001 33.4 1.8 13 63-75 342-354 (446)
467 KOG3579 Predicted E3 ubiquitin 23.3 1.4E+02 0.0031 29.7 4.8 64 44-108 267-339 (352)
468 PF12171 zf-C2H2_jaz: Zinc-fin 23.3 45 0.00096 20.3 1.0 15 45-59 1-15 (27)
469 KOG3899 Uncharacterized conser 23.1 40 0.00088 33.5 1.1 27 66-92 328-366 (381)
470 PF01365 RYDR_ITPR: RIH domain 23.0 1.6E+02 0.0034 27.9 5.2 117 302-421 35-171 (207)
471 KOG4231 Intracellular membrane 22.9 72 0.0016 34.5 3.0 69 434-504 330-398 (763)
472 COG4530 Uncharacterized protei 22.8 61 0.0013 27.3 1.9 33 42-74 6-43 (129)
473 PF00412 LIM: LIM domain; Int 22.6 69 0.0015 23.1 2.1 32 43-74 24-56 (58)
474 PRK14559 putative protein seri 22.6 48 0.001 37.5 1.7 37 47-92 3-39 (645)
475 COG5537 IRR1 Cohesin [Cell div 22.3 5.2E+02 0.011 28.9 9.2 101 235-338 283-385 (740)
476 PF07191 zinc-ribbons_6: zinc- 22.3 8.6 0.00019 29.8 -2.9 40 45-90 1-40 (70)
477 KOG2676 Uncharacterized conser 22.0 93 0.002 32.2 3.4 65 288-352 375-443 (478)
478 PF08216 CTNNBL: Catenin-beta- 21.5 84 0.0018 26.7 2.6 40 329-368 65-104 (108)
479 COG5242 TFB4 RNA polymerase II 21.4 42 0.00091 32.1 0.8 17 45-61 260-276 (296)
480 PF12726 SEN1_N: SEN1 N termin 21.3 8.7E+02 0.019 28.0 11.7 162 224-403 438-601 (727)
481 PF12074 DUF3554: Domain of un 21.3 7.8E+02 0.017 25.1 10.4 187 310-508 22-238 (339)
482 PF14631 FancD2: Fanconi anaem 21.1 1.4E+03 0.029 28.9 13.6 105 310-419 431-542 (1426)
483 PF08389 Xpo1: Exportin 1-like 20.8 3.4E+02 0.0074 23.3 6.7 104 227-334 26-148 (148)
484 KOG1609 Protein involved in mR 20.8 74 0.0016 32.2 2.6 52 40-91 72-134 (323)
485 PF09162 Tap-RNA_bind: Tap, RN 20.8 68 0.0015 26.2 1.8 20 59-78 10-29 (88)
486 COG4049 Uncharacterized protei 20.6 30 0.00064 25.4 -0.3 16 43-58 15-30 (65)
487 PHA02862 5L protein; Provision 20.5 74 0.0016 28.4 2.1 45 47-92 4-54 (156)
488 KOG0314 Predicted E3 ubiquitin 20.5 43 0.00094 35.7 0.8 76 37-112 298-377 (448)
489 PF07923 N1221: N1221-like pro 20.4 2E+02 0.0042 29.1 5.5 54 350-403 59-127 (293)
490 KOG1525 Sister chromatid cohes 20.2 5E+02 0.011 32.0 9.5 143 226-378 258-403 (1266)
491 PRK00420 hypothetical protein; 20.1 33 0.00072 29.3 -0.1 10 46-55 24-33 (112)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=3e-26 Score=269.75 Aligned_cols=280 Identities=25% Similarity=0.304 Sum_probs=249.9
Q ss_pred chhHHHHHHhcCCC--CHHHHHHHHHHHHHHhccChhhhHHhhc-CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCch
Q 009036 226 NEQEDYFVQKLKSP--QVHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKIN 302 (546)
Q Consensus 226 ~~~i~~lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~l~~-~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~n 302 (546)
...+.++++.|+++ +.+.|+.|+..|+.++++++++|..+.+ .|+||.|+.+|.+++..++++|+.+|.+|+.++++
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~n 91 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDL 91 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH
Confidence 46788999999866 7899999999999999999999999996 99999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc---chhhHH-hhcCChHHHHHhhccCC---HHHHHHHHHHH
Q 009036 303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD---QNKTAI-GVLGALPPLLHLLKSDS---ERTQHDSALAL 375 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~---~~k~~i-~~~g~l~~Lv~lL~~~~---~~~~~~A~~aL 375 (546)
+..|+..|++++|+++|++++.+.|++|+++|++|+.+. +++..| ...|+++.|+.+|++++ .-++..|+.+|
T Consensus 92 k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL 171 (2102)
T PLN03200 92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL 171 (2102)
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999873 445454 46999999999999863 23556778999
Q ss_pred HHhhcCchhHH-HHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHH
Q 009036 376 YHLSLVKSNRT-KLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQ 451 (546)
Q Consensus 376 ~~Ls~~~~n~~-~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~ 451 (546)
+|||.+.+++. .+++.|+|+.|+.+|.+++ .++.|+.+|.+++.. ++++..+++.|+|+.|+++|.++ .+..++
T Consensus 172 ~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg--~~~~VR 249 (2102)
T PLN03200 172 RNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG--NEVSVR 249 (2102)
T ss_pred HHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccC--CChHHH
Confidence 99999988875 5689999999999998764 889999999888865 77999999999999999999875 346899
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCC---------HHHHHHHHHHHHHhhcCC
Q 009036 452 ESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGS---------EHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 452 e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s---------~~~k~~A~~lL~~L~~~~ 507 (546)
++|+++|.+||.++.+.+..+.+.|+++.|+.++...+ ...++.|.++|.+|++..
T Consensus 250 E~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 250 AEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 99999999999998899999999999999999988654 345999999999999853
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.94 E-value=3.8e-25 Score=260.48 Aligned_cols=282 Identities=20% Similarity=0.194 Sum_probs=246.2
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM 304 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~ 304 (546)
+.++++.|+++|++++.+.|..|++.|++++..+++++..+++.|+||.|+.+|.+++..++++|+++|.||+.++.+..
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred HHH-hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchh--------------------------------------h
Q 009036 305 LIV-RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNK--------------------------------------T 345 (546)
Q Consensus 305 ~i~-~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k--------------------------------------~ 345 (546)
.++ +.|++++|+++|++++.+++..|+++|.+|+...+.. .
T Consensus 524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 544 7899999999999999999999999999996322110 0
Q ss_pred HHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC--C
Q 009036 346 AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS--C 420 (546)
Q Consensus 346 ~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~--~ 420 (546)
.....|+++.|+++|++++.+.++.|+++|.+++.. .+++..++..|+|+.|+.+|..++ ++..++.+|.||.. .
T Consensus 604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence 111358999999999999999999999999999984 567888999999999999998765 88899999999995 3
Q ss_pred cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 009036 421 SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRML 500 (546)
Q Consensus 421 ~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL 500 (546)
.+++..+++.|+|++|+++|.. .+.+.++.|+.+|.+++.+.+ .+..+...|+++.|++++++|+++.|+.|.++|
T Consensus 684 ~~q~~~~v~~GaV~pL~~LL~~---~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 684 ENRKVSYAAEDAIKPLIKLAKS---SSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARAL 759 (2102)
T ss_pred HHHHHHHHHcCCHHHHHHHHhC---CChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Confidence 4456678899999999999988 468999999999999999874 455566778899999999999999999999999
Q ss_pred HHhhcCCccc
Q 009036 501 ELMKGRAEEE 510 (546)
Q Consensus 501 ~~L~~~~~~~ 510 (546)
..|++....+
T Consensus 760 ~~L~~~~~~~ 769 (2102)
T PLN03200 760 AQLLKHFPVD 769 (2102)
T ss_pred HHHHhCCChh
Confidence 9998766533
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.6e-25 Score=217.53 Aligned_cols=294 Identities=22% Similarity=0.300 Sum_probs=266.0
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
-..++.|+..+.+...++|+.++..|.+|+.. +.+|..+...|++.+|..+-++.|..+|.++..+|.||....+||..
T Consensus 125 l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~ 203 (550)
T KOG4224|consen 125 LLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRV 203 (550)
T ss_pred ccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhh
Confidence 35567788888788899999999999999988 68999999999999999988899999999999999999999999999
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcC--ChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLG--ALPPLLHLLKSDSERTQHDSALALYHLSLVKS 383 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g--~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~ 383 (546)
++..|++|.|+.++++++..++.+++.++.+++.+...+..+.+.+ .++.|++++++++++++-.|..+|.||++..+
T Consensus 204 LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~ 283 (550)
T KOG4224|consen 204 LVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE 283 (550)
T ss_pred hhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch
Confidence 9999999999999999999999999999999999998888888765 99999999999999999999999999999999
Q ss_pred hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 009036 384 NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYAL 461 (546)
Q Consensus 384 n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L 461 (546)
.+..++++|.+|.++++|.++. ..-..+.++.|++..+-+.-.|++.|.+.+||++|+-+ +++++|-+|+.+|++|
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~--dnEeiqchAvstLrnL 361 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAG--DNEEIQCHAVSTLRNL 361 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcC--CchhhhhhHHHHHHHH
Confidence 9999999999999999998754 55667889999999999888899999999999999997 5688999999999999
Q ss_pred hcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036 462 SHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS 528 (546)
Q Consensus 462 ~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (546)
+..++..+.++.+.|+++.|.+++.++.-.++.....++..|+=...+. ..++++|+.+-+
T Consensus 362 Aasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k------~~lld~gi~~iL 422 (550)
T KOG4224|consen 362 AASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK------EALLDSGIIPIL 422 (550)
T ss_pred hhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH------HHHhhcCCccee
Confidence 9988888999999999999999999999999999999999987543222 335566666544
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.2e-24 Score=208.40 Aligned_cols=280 Identities=23% Similarity=0.283 Sum_probs=253.7
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM 304 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~ 304 (546)
..+++..+.+.-++.+..+|..+...|.++.. ..++|+.++.+|++|+|+.++.++|..+|..+..+|.|++-+..+|+
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 35677788886688899999999999999987 46899999999999999999999999999999999999999999999
Q ss_pred HHHhcC--ChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc
Q 009036 305 LIVRSG--LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK 382 (546)
Q Consensus 305 ~i~~~g--~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~ 382 (546)
.+++.+ .++.|+.++.+++++++-.|..+|.+|+.+.++...|.+.|.+|.++++|+++........+.++.|++..+
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence 999887 999999999999999999999999999999999999999999999999999987777788888999999999
Q ss_pred hhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036 383 SNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL 458 (546)
Q Consensus 383 ~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L 458 (546)
-|-.-|+++|.+..|+.+|..++ ++-.|..+|+||+. .+.++..|.+.|+|+.+..++..+ .-.+++..-+++
T Consensus 324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~---pvsvqseisac~ 400 (550)
T KOG4224|consen 324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG---PVSVQSEISACI 400 (550)
T ss_pred CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC---ChhHHHHHHHHH
Confidence 99999999999999999998654 78899999999997 777899999999999999999985 356777777777
Q ss_pred HHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcc
Q 009036 459 YALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE 509 (546)
Q Consensus 459 ~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~ 509 (546)
..|+-.+ ..+..+.+.|+++.|+.+..+.+.+++.+|+.+|-+|++..+.
T Consensus 401 a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 401 AQLALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred HHHHhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence 7776544 5677888999999999999999999999999999999876543
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3e-23 Score=216.32 Aligned_cols=282 Identities=18% Similarity=0.233 Sum_probs=249.3
Q ss_pred CchhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cch
Q 009036 225 SNEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KIN 302 (546)
Q Consensus 225 ~~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~n 302 (546)
..+.++.+|..|. ..++..|.+|+++|.+++..+.+.-+.++++|++|.++.++.+++..+++.|+++|.|++.+ +..
T Consensus 107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence 3578899999996 55699999999999999999999999999999999999999999999999999999999997 677
Q ss_pred HHHHHhcCChHHHHHHHccCCH-HHHHHHHHHHhhcccccchhhHHh-hcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036 303 KMLIVRSGLVPPIVDVLMAGSA-EAQEHACGAIFSLALDDQNKTAIG-VLGALPPLLHLLKSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~~~-~~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~ 380 (546)
|..+.+.|++++|+.++..... ....++.++|.||+...+....+. ...+++.|..+|.+.+.++..+|+|+|.+|+.
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 8888899999999999998754 788899999999998875444433 35789999999999999999999999999997
Q ss_pred -CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHH-HHhCCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036 381 -VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVA-VLDSGGVECLVGMLRKGTELSESTQESCVS 456 (546)
Q Consensus 381 -~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~-i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~ 456 (546)
.++.-..+++.|+++.|+++|...+ ++-.|++++.|++...+...+ +++.|+++.|..+|... .....+..|++
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s--~~~~ikkEAcW 344 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS--PKESIKKEACW 344 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC--cchhHHHHHHH
Confidence 4556677778899999999998765 777899999999987666555 56899999999999964 23457889999
Q ss_pred HHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 457 VLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 457 ~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
++.|++.++....+.+.++|+++.|+.+++.+.-++|+.|++++.+++..+.
T Consensus 345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 9999999998888888999999999999999999999999999999998775
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=8.4e-21 Score=198.08 Aligned_cols=306 Identities=17% Similarity=0.165 Sum_probs=259.2
Q ss_pred CCCCCchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCH-HHHHHHHHHHHHhhcC
Q 009036 221 NHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYT-NVQVNAVAALVNLSLE 299 (546)
Q Consensus 221 ~~~~~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~-~v~~~A~~~L~nLs~~ 299 (546)
+.+++.++++.++..|.+++.+++++|+++|.+++.+++..|..+.+.|+++.|+.++...+. ....++.++|.||+.+
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 345678999999999999999999999999999999999999999999999999999988766 6788999999999986
Q ss_pred CchHHHH-HhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 009036 300 KINKMLI-VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYH 377 (546)
Q Consensus 300 ~~nk~~i-~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~ 377 (546)
..-...+ .-..++|.|..+|++.+.++...|+++|.+|+... +.-..+.+.|+++.|+++|.+.+..++..|++++.|
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 4211111 12357999999999999999999999999999765 455566779999999999999999999999999999
Q ss_pred hhcCchh-HHHHHhcCcHHHHHHHHhC-c--hHHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHH
Q 009036 378 LSLVKSN-RTKLVKLGSVNALLGMVNS-G--HMTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQE 452 (546)
Q Consensus 378 Ls~~~~n-~~~iv~~Gav~~Lv~lL~~-~--~~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e 452 (546)
+....+. .+.++..|+++.|..++.. + .+++.|+++|.|++. +.+..++++++|.+|.|+.+|..+ ..+.+.
T Consensus 306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~---ef~~rK 382 (514)
T KOG0166|consen 306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA---EFDIRK 382 (514)
T ss_pred eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc---chHHHH
Confidence 9885555 5566777999999999984 2 288999999999986 456788889999999999999995 478999
Q ss_pred HHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccc---cCChHHHHhcCCcccc
Q 009036 453 SCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEE---GVDWDELLDSGLVSRS 528 (546)
Q Consensus 453 ~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~---~~~~~~~~~~~~~~~~ 528 (546)
.|++++.|++.+ +.+.-..+.+.|+++.|..++.-.+.++-..+...|.++...++...+ .-.-.-+.+.||+..-
T Consensus 383 EAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldki 462 (514)
T KOG0166|consen 383 EAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKI 462 (514)
T ss_pred HHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHH
Confidence 999999999985 445556788999999999999888999999999999999988776664 2223557888888876
Q ss_pred c
Q 009036 529 R 529 (546)
Q Consensus 529 ~ 529 (546)
.
T Consensus 463 E 463 (514)
T KOG0166|consen 463 E 463 (514)
T ss_pred H
Confidence 4
No 7
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.87 E-value=1e-22 Score=161.37 Aligned_cols=73 Identities=40% Similarity=0.666 Sum_probs=63.9
Q ss_pred CCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009036 42 PPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSL 114 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 114 (546)
+|++|+||||+++|+|||++++||||||.+|++|++.++..||.|++++...+|+||..||+.|++|+.+|.+
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~ 73 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK 73 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence 6999999999999999999999999999999999998788999999999999999999999999999999863
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.85 E-value=2.2e-20 Score=181.75 Aligned_cols=281 Identities=15% Similarity=0.188 Sum_probs=240.4
Q ss_pred CCchhHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cc
Q 009036 224 NSNEQEDYFVQKL-KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KI 301 (546)
Q Consensus 224 ~~~~~i~~lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~ 301 (546)
++.+.++.+|..| ......-|.+|++.|.+++......-+.+++.|++|.++.+|.+.+.++++.++++|.|++-+ +.
T Consensus 111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence 3577889999999 444556789999999999998777777788999999999999999999999999999999997 56
Q ss_pred hHHHHHhcCChHHHHHHHccCC--HHHHHHHHHHHhhcccccchhhHHh-hcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036 302 NKMLIVRSGLVPPIVDVLMAGS--AEAQEHACGAIFSLALDDQNKTAIG-VLGALPPLLHLLKSDSERTQHDSALALYHL 378 (546)
Q Consensus 302 nk~~i~~~g~l~~Lv~lL~~~~--~~~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L 378 (546)
.|..+.+.|++++|+.+|.+.. ..+..++.++|.||+........-. -..++|.|.+++.+.++++...|+|+|.+|
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYl 270 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYL 270 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 7888889999999999998774 5788999999999998753321111 135799999999999999999999999999
Q ss_pred hcCc-hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHH-HHhCCcHHHHHHHHccCCCCCHHHHHHH
Q 009036 379 SLVK-SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVA-VLDSGGVECLVGMLRKGTELSESTQESC 454 (546)
Q Consensus 379 s~~~-~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~-i~~~g~i~~Lv~lL~~~~~~s~~~~e~A 454 (546)
+..+ +....+++.|..+.|+++|.+++ ++.-+++.+.|+....+.... +++.|+++.+-.+|.+. .+.++..|
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~---ke~irKEa 347 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP---KENIRKEA 347 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh---hhhhhhhh
Confidence 9855 44566678899999999999876 777899999999987666555 45899999999999883 35788899
Q ss_pred HHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 455 VSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 455 v~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
++.+.++..++.+..+.+.+++.+|.|+.++..-.-.+|+.|.+++.+....+
T Consensus 348 CWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg 400 (526)
T COG5064 348 CWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400 (526)
T ss_pred heeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999998888888899999999999999999999999999999887654
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.82 E-value=2e-19 Score=175.11 Aligned_cols=291 Identities=18% Similarity=0.213 Sum_probs=241.0
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHH-hccChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKL-TRSREETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~L-a~~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
.++.+.+.|-+.+.+.|..|+...+.+ +++..--...+.++|++|.++.++.+ ...-.+-+|+++|.|++....++.+
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 457888889999999999999999874 55544556677899999999999954 5666788999999999998777666
Q ss_pred HH-hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-hhhHHhhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcC
Q 009036 306 IV-RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-NKTAIGVLGALPPLLHLLKSD--SERTQHDSALALYHLSLV 381 (546)
Q Consensus 306 i~-~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~~Ls~~ 381 (546)
++ +.|++|.++.+|.+++.++++.+.++|.|++.+.+ .+..+.+.|++++|+.+|.+. +....+++.|+|.|||..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 54 88999999999999999999999999999999874 588889999999999999875 457889999999999983
Q ss_pred c---hhHHHHHhcCcHHHHHHHHhC--chHHHHHHHHHHHhhCCcc-cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036 382 K---SNRTKLVKLGSVNALLGMVNS--GHMTGRVLLILGNLASCSD-GRVAVLDSGGVECLVGMLRKGTELSESTQESCV 455 (546)
Q Consensus 382 ~---~n~~~iv~~Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e-~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av 455 (546)
. .+-..|- .+++.|.+++.. .++...|++++..|+..+. ...++++.|+...|+++|.+ .+..++.-|+
T Consensus 232 knP~P~w~~is--qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~---~sa~iqtPal 306 (526)
T COG5064 232 KNPPPDWSNIS--QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH---ESAKIQTPAL 306 (526)
T ss_pred CCCCCchHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC---ccccccCHHH
Confidence 2 2222222 368999999865 4588899999999998664 45566799999999999998 4577899999
Q ss_pred HHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036 456 SVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS 528 (546)
Q Consensus 456 ~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (546)
....++..++....+++...|+++.+..++.+..+++|+.|.+.+.++.... ..+.+-++++-+.+.+
T Consensus 307 R~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn-----teqiqavid~nliPpL 374 (526)
T COG5064 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGN-----TEQIQAVIDANLIPPL 374 (526)
T ss_pred HhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCC-----HHHHHHHHhcccchHH
Confidence 9999999988788889999999999999999999999999999999987643 2234555555555544
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.77 E-value=1.4e-16 Score=175.23 Aligned_cols=298 Identities=19% Similarity=0.257 Sum_probs=246.2
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
.+.+..|++.|.+++.+....++..|.+|+-. .+|+..|.+.|+|+.|+.++.+++.+++..++.+|.||+.++++|..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 56788999999999999999999999999986 46999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchh
Q 009036 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSN 384 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n 384 (546)
|++.|++|.|+.+|.++ ..+..+..+|.+||.++++|..+...++++.|+++|-. .+.++..+++.++.||+.+..|
T Consensus 368 mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN 445 (708)
T ss_pred HHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence 99999999999999865 45567999999999999999999988999999998765 4566667788889999999999
Q ss_pred HHHHHhcCcHHHHHHHHhC----------------------------------------chHHHHHHHHHHHhhCC----
Q 009036 385 RTKLVKLGSVNALLGMVNS----------------------------------------GHMTGRVLLILGNLASC---- 420 (546)
Q Consensus 385 ~~~iv~~Gav~~Lv~lL~~----------------------------------------~~~~e~al~~L~nLa~~---- 420 (546)
.+.|.+.|+++.|++.... .+..-.++++|.||...
T Consensus 446 aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~ 525 (708)
T PF05804_consen 446 AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDW 525 (708)
T ss_pred HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCH
Confidence 9888888778877653211 01344577777776532
Q ss_pred ----------------------------------------cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036 421 ----------------------------------------SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYA 460 (546)
Q Consensus 421 ----------------------------------------~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~ 460 (546)
++....+.+.|.++.|+.+|.... .+++..-+.+.+++.
T Consensus 526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kq-eDdE~VlQil~~f~~ 604 (708)
T PF05804_consen 526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQ-EDDEIVLQILYVFYQ 604 (708)
T ss_pred HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhC-chHHHHHHHHHHHHH
Confidence 233444557888888888887754 467788888888888
Q ss_pred HhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcccc----------ccCChHHHHhcCCccc
Q 009036 461 LSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEE----------EGVDWDELLDSGLVSR 527 (546)
Q Consensus 461 L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~----------~~~~~~~~~~~~~~~~ 527 (546)
+..+.+.+..++.+.+++..|+.++++.|+.+|+.|-.+|-.+.++..+=. ...+|=++.+.-...-
T Consensus 605 ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~~~~~~~ 681 (708)
T PF05804_consen 605 LLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVESQQLDD 681 (708)
T ss_pred HHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHhcccccc
Confidence 888876677777888999999999999999999999999999998775332 4667888877544433
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.77 E-value=3.4e-17 Score=179.89 Aligned_cols=215 Identities=21% Similarity=0.244 Sum_probs=187.1
Q ss_pred HHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHH
Q 009036 287 VNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSER 366 (546)
Q Consensus 287 ~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~ 366 (546)
..++.+|.||+.+..++.++.+.|+++.|+.+|.+++.++...+..+|..|+...++|..+.+.|+++.|++++.+++.+
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~ 346 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENED 346 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCC
Q 009036 367 TQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTEL 446 (546)
Q Consensus 367 ~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~ 446 (546)
++..++++|+|||.+.++|..|++.|+||.|+.+|.+++.+..++++|.+|+..+++|..+...++++.|+++|..+ .
T Consensus 347 l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~--~ 424 (708)
T PF05804_consen 347 LVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN--S 424 (708)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC--C
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999998875 2
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 447 SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 447 s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
.+.....++.++.||+... ...+++.+.|+++.|++......+.. ...++++++.+.
T Consensus 425 ~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~ 481 (708)
T PF05804_consen 425 EEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHD 481 (708)
T ss_pred CccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcC
Confidence 3555566788888888776 44456667778888888755443322 345666666655
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.71 E-value=2.6e-16 Score=169.41 Aligned_cols=280 Identities=21% Similarity=0.182 Sum_probs=228.9
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC---Cc
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE---KI 301 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~---~~ 301 (546)
++..+++.+.+|.+.++.+|-.|...|..+++.+...|..+.+.|+|+.|+.+|.+...++|..|+.+|.||... ++
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 467789999999999999999999999999999999999999999999999999999999999999999999984 36
Q ss_pred hHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC--------------CHH
Q 009036 302 NKMLIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD--------------SER 366 (546)
Q Consensus 302 nk~~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~--------------~~~ 366 (546)
||..|.+.++|+.++++|+. .+.++++....+|+||+..|..|..|... ++..|..-+-.. ...
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence 99999999999999999997 69999999999999999998888877654 566665444221 245
Q ss_pred HHHHHHHHHHHhhc-CchhHHHHHhc-CcHHHHHHHHhC--------chHHHHHHHHHHHhhCCcc-----c-H------
Q 009036 367 TQHDSALALYHLSL-VKSNRTKLVKL-GSVNALLGMVNS--------GHMTGRVLLILGNLASCSD-----G-R------ 424 (546)
Q Consensus 367 ~~~~A~~aL~~Ls~-~~~n~~~iv~~-Gav~~Lv~lL~~--------~~~~e~al~~L~nLa~~~e-----~-r------ 424 (546)
+..++..+|.|+++ ..+.|++|-+. |.|..|+..+.. ....|+|+.+|.||+..-+ . +
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 77899999999998 67889999988 999999999873 1278999999999975211 0 0
Q ss_pred --------------------HH----------------------HHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 425 --------------------VA----------------------VLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 425 --------------------~~----------------------i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
.. +.+..+|..-+.+|... .++.+.|.++++|-+|+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s--~n~~TlEasaGaLQNlt 547 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALS--KNDNTLEASAGALQNLT 547 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHh--cchHHHHHhhhhHhhhh
Confidence 00 01111333333444432 45788999999999998
Q ss_pred cCC----hhhHH-HHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 463 HGG----LRFKG-LAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 463 ~~~----~~~~~-~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
.+. ...+. ++..+.+++.|++|++.+++++.+.+..+|++|+.+.
T Consensus 548 A~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 548 AGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred ccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 753 23444 4488889999999999999999999999999999865
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.70 E-value=2.7e-16 Score=174.98 Aligned_cols=261 Identities=20% Similarity=0.227 Sum_probs=224.9
Q ss_pred HH-HHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc---------C---CHHHHHHHHHHHHHhhcC-CchHHHHH-h
Q 009036 244 VE-EALISLRKLTRSREETRVSLCTPRLLLALRSLIIS---------R---YTNVQVNAVAALVNLSLE-KINKMLIV-R 308 (546)
Q Consensus 244 ~~-~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s---------~---~~~v~~~A~~~L~nLs~~-~~nk~~i~-~ 308 (546)
|. .|+..|..++. ++++|..+.+.|++..+.+||.- + +..++..|.++|.||... ..||..+. .
T Consensus 314 ~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~ 392 (2195)
T KOG2122|consen 314 QLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ 392 (2195)
T ss_pred hhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 44 67777777776 57999999999999999998752 1 346889999999999995 57888887 5
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHhhccccc--chhhHHhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhc-Cchh
Q 009036 309 SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD--QNKTAIGVLGALPPLLHLL-KSDSERTQHDSALALYHLSL-VKSN 384 (546)
Q Consensus 309 ~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~-~~~n 384 (546)
.|++..||..|.+...++.+..+.+|.||++.. ..|..+.+.|-+..|+..- +.......+..+.|||||+. ..+|
T Consensus 393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN 472 (2195)
T KOG2122|consen 393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN 472 (2195)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence 699999999999999999999999999999875 3488888889998888764 44555677899999999998 5689
Q ss_pred HHHHHhc-CcHHHHHHHHhCc------hHHHHHHHHHHHhh----CCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHH
Q 009036 385 RTKLVKL-GSVNALLGMVNSG------HMTGRVLLILGNLA----SCSDGRVAVLDSGGVECLVGMLRKGTELSESTQES 453 (546)
Q Consensus 385 ~~~iv~~-Gav~~Lv~lL~~~------~~~e~al~~L~nLa----~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~ 453 (546)
+..|... |++..||.+|.-. .+.|.+-+||.|.+ .+++.|+-+.+++++..|+..|++ .+-.+.-+
T Consensus 473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS---~SLTiVSN 549 (2195)
T KOG2122|consen 473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKS---HSLTIVSN 549 (2195)
T ss_pred chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhh---cceEEeec
Confidence 9999998 9999999999753 17888999999965 477888888899999999999999 45678899
Q ss_pred HHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 454 CVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 454 Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
++++||||...+.+.++++++.|+++.|..|+++.+.-+-+-++..|++|..+..
T Consensus 550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 9999999999888999999999999999999999999999999999999987763
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.70 E-value=1.3e-17 Score=128.66 Aligned_cols=63 Identities=43% Similarity=0.711 Sum_probs=59.5
Q ss_pred ceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009036 45 EFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNW 108 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 108 (546)
+|.||||+++|+|||+++|||+|||.||.+|+.. +..||.|+++++..+++||..|++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5889999999999999999999999999999986 56899999999888999999999999998
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.4e-14 Score=141.43 Aligned_cols=279 Identities=16% Similarity=0.205 Sum_probs=236.1
Q ss_pred CchhHHHHHHhc--CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCc
Q 009036 225 SNEQEDYFVQKL--KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKI 301 (546)
Q Consensus 225 ~~~~i~~lv~~L--~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~ 301 (546)
+..+..-+++.| +..+.+.....+..++.-+-.++.+|+.+.+.++++.+...|.. +...+...+.+++..|..+++
T Consensus 143 da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDD 222 (461)
T KOG4199|consen 143 DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDD 222 (461)
T ss_pred ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCc
Confidence 345566677776 56677888899999999999999999999999999999976654 445677888899988877654
Q ss_pred ----------hHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC----CHH
Q 009036 302 ----------NKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD----SER 366 (546)
Q Consensus 302 ----------nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~----~~~ 366 (546)
..+.|++.|++..|++.|+.+ ++.+...++.+|..|+..++....|.+.|++..|++++.+. +..
T Consensus 223 iRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~ 302 (461)
T KOG4199|consen 223 IRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRT 302 (461)
T ss_pred eeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHH
Confidence 345567888999999999988 88999999999999999999999999999999999999873 334
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC----chHHHHHHHHHHHhh-CCcccHHHHHhCCcHHHHHHHHc
Q 009036 367 TQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS----GHMTGRVLLILGNLA-SCSDGRVAVLDSGGVECLVGMLR 441 (546)
Q Consensus 367 ~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~----~~~~e~al~~L~nLa-~~~e~r~~i~~~g~i~~Lv~lL~ 441 (546)
+.+.++.+|..|+-.++++..||+.|+.+.++.++.. +.+.+.++.++.-|| +.++....+++.|+-...++.|+
T Consensus 303 l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmk 382 (461)
T KOG4199|consen 303 LAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMK 382 (461)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHH
Confidence 5578889999999999999999999999999988753 448899999999999 68889999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 442 KGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 442 ~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
... ....+|.+|+..+.|+...+...+..+...| ++.|+.......+.+...|..+|+-|--
T Consensus 383 ahP-~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 383 AHP-VAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred hCc-HHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 853 4467899999999999988877888777766 7888888888889999999999998743
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=7.8e-13 Score=129.39 Aligned_cols=267 Identities=17% Similarity=0.266 Sum_probs=220.6
Q ss_pred CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc--cCCHHHHHHHHHHHHHhhc-CCchHHHHHhcCChH
Q 009036 237 KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII--SRYTNVQVNAVAALVNLSL-EKINKMLIVRSGLVP 313 (546)
Q Consensus 237 ~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~--s~~~~v~~~A~~~L~nLs~-~~~nk~~i~~~g~l~ 313 (546)
.+++...-.+++..|..+....+. +..+.++..++.+|. .++.++-...+..+..-+. ++.||..+++.++++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 455667778899999888876544 456678899999886 3566666666777766555 688999999999999
Q ss_pred HHHHHHc-cCCHHHHHHHHHHHhhcccccch----------hhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcC
Q 009036 314 PIVDVLM-AGSAEAQEHACGAIFSLALDDQN----------KTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSLV 381 (546)
Q Consensus 314 ~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~----------k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~ 381 (546)
.+...|. .+...+...+.+++..|..+++. ...|...|++..|++.|+.. ++.....+..+|..|+..
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9997665 55557888899999998877643 44556678899999999874 688888999999999999
Q ss_pred chhHHHHHhcCcHHHHHHHHhCch------HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036 382 KSNRTKLVKLGSVNALLGMVNSGH------MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCV 455 (546)
Q Consensus 382 ~~n~~~iv~~Gav~~Lv~lL~~~~------~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av 455 (546)
++.++.+++.|++..|++++.+.+ ....++.+|..|+..+..+..|++.|+.+.++.++.... +++.+.+.++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~-~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS-DDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC-CChHHHHHHH
Confidence 999999999999999999998732 556799999999999999999999999999999987754 5788999999
Q ss_pred HHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhhcCCc
Q 009036 456 SVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG--SEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 456 ~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~--s~~~k~~A~~lL~~L~~~~~ 508 (546)
.++.-||-..++....+.+.|+-...++-++.. ...++++|.+++++|.....
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 999999998888888888999888888876655 45578999999999976543
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.54 E-value=6.5e-13 Score=130.49 Aligned_cols=193 Identities=20% Similarity=0.233 Sum_probs=168.8
Q ss_pred hhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch
Q 009036 265 LCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN 343 (546)
Q Consensus 265 l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~ 343 (546)
+.+++-+..|+.+|.. .|+.+++.|+.++.|.+..+.++..|.+.|+++.+..+|.++++.++..|+.+|.+|+...++
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 3566778999999985 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036 344 KTAIGVLGALPPLLHLLKSD--SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS 419 (546)
Q Consensus 344 k~~i~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~ 419 (546)
+..|.. .++.+++.+.+. +..++..++.+|.||+..++++..+.. .++.|+.+|..++ ++..++++|.||+.
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 888754 477777765543 678889999999999988877776654 6999999998866 88899999999999
Q ss_pred CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 420 CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 420 ~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
++.....++.+.+...++.++... .+.+....++.+..++..
T Consensus 164 np~~~~~Ll~~q~~~~~~~Lf~~~--~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 164 NPDMTRELLSAQVLSSFLSLFNSS--ESKENLLRVLTFFENINE 205 (254)
T ss_pred CHHHHHHHHhccchhHHHHHHccC--CccHHHHHHHHHHHHHHH
Confidence 999999999999999999999885 346777888888888865
No 18
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.53 E-value=1.7e-13 Score=153.13 Aligned_cols=286 Identities=22% Similarity=0.258 Sum_probs=221.7
Q ss_pred hhHHHHHHhcCCC---CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHH---HHH-------ccC------C-HHHH
Q 009036 227 EQEDYFVQKLKSP---QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALR---SLI-------ISR------Y-TNVQ 286 (546)
Q Consensus 227 ~~i~~lv~~L~s~---~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv---~lL-------~s~------~-~~v~ 286 (546)
+-++.|++.|... +.+.+..|-..|.++....++.+..=.+..++++|- ..+ ... + .+=+
T Consensus 235 gCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~ 314 (2195)
T KOG2122|consen 235 GCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQ 314 (2195)
T ss_pred cchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchh
Confidence 4457788888544 456788889999998887664433333333333332 222 111 1 1223
Q ss_pred H-HHHHHHHHhhcCCchHHHHHhcCChHHHHHHHcc-----C-------CHHHHHHHHHHHhhccccc-chhhHHh-hcC
Q 009036 287 V-NAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMA-----G-------SAEAQEHACGAIFSLALDD-QNKTAIG-VLG 351 (546)
Q Consensus 287 ~-~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~-----~-------~~~~~~~Aa~~L~~Ls~~~-~~k~~i~-~~g 351 (546)
. .|+.+|..++.+++.|..+.+.|++..|.++|+. + ...+|.+|..+|.||.+.+ .||..+. ..|
T Consensus 315 lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 315 LCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 3 5777889999999999999999999999998752 1 3468999999999999987 5677774 589
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHhhc-CchhHHHHH-hcCcHHHHHHHHhC---chHHHHHHHHHHHhhC-CcccHH
Q 009036 352 ALPPLLHLLKSDSERTQHDSALALYHLSL-VKSNRTKLV-KLGSVNALLGMVNS---GHMTGRVLLILGNLAS-CSDGRV 425 (546)
Q Consensus 352 ~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~~n~~~iv-~~Gav~~Lv~lL~~---~~~~e~al~~L~nLa~-~~e~r~ 425 (546)
.++.||..|.+...++....+.+|.||+. .+.|-++++ +.|-|..|+..-.. .......|.+||||+. |.+|+.
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 99999999999888998999999999997 344555554 55999999887543 2377889999999985 789999
Q ss_pred HHHh-CCcHHHHHHHHccC-CCCCHHHHHHHHHHHHHHhc---CChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 009036 426 AVLD-SGGVECLVGMLRKG-TELSESTQESCVSVLYALSH---GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRML 500 (546)
Q Consensus 426 ~i~~-~g~i~~Lv~lL~~~-~~~s~~~~e~Av~~L~~L~~---~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL 500 (546)
.|.. .|++..||.+|.-. ......+.|.|-+||.++.. ..+.++++.++.+++..|+..+++.+-.+.-++.+.|
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 9998 78999999999763 22346788999999999976 4678999999999999999999999999999999999
Q ss_pred HHhhcCCccccc
Q 009036 501 ELMKGRAEEEEE 512 (546)
Q Consensus 501 ~~L~~~~~~~~~ 512 (546)
|+|......+++
T Consensus 555 WNLSAR~p~DQq 566 (2195)
T KOG2122|consen 555 WNLSARSPEDQQ 566 (2195)
T ss_pred hhhhcCCHHHHH
Confidence 999977766553
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.49 E-value=4.6e-12 Score=124.47 Aligned_cols=192 Identities=21% Similarity=0.227 Sum_probs=169.8
Q ss_pred CchhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchH
Q 009036 225 SNEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINK 303 (546)
Q Consensus 225 ~~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk 303 (546)
+...++.|+..|+ +.++.+|+.++..+.+.+.. +.++..+.+.|+++.+..+|..+++.+++.|+.+|.|++.+.+|+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 4577899999997 55899999999999998764 689999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036 304 MLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 381 (546)
..|.. .++.+++.+.+. +.+++..+.++|.+|+..+++...+. +.++.|+.+|..++..++..++++|.||+.+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88753 588888765554 78999999999999999888877775 4799999999999999999999999999999
Q ss_pred chhHHHHHhcCcHHHHHHHHhCc---hHHHHHHHHHHHhhCCc
Q 009036 382 KSNRTKLVKLGSVNALLGMVNSG---HMTGRVLLILGNLASCS 421 (546)
Q Consensus 382 ~~n~~~iv~~Gav~~Lv~lL~~~---~~~e~al~~L~nLa~~~ 421 (546)
+.+...++.++++..++.++... ++...++..+.||..+-
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999764 37778899999987643
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.44 E-value=7.9e-11 Score=127.92 Aligned_cols=278 Identities=19% Similarity=0.172 Sum_probs=223.7
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
...+.+...|.++++.++.-+++.|.+++.+++.....+.+.++++.++.++.++|..+...|+.+|.+|+..+.....+
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 45678888999999999999999999999988877788889999999999999999999999999999999988888888
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR 385 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~ 385 (546)
...+.+..|..++...+..+|..+..++.+++... +....+...|.++.++..|+++|.-++.+|+.+|..|+..+.+.
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~ 236 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGL 236 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHH
Confidence 88888999999999888889999999999998665 55666777899999999999999999999999999999988999
Q ss_pred HHHHhcCcHHHHHHHHhCch--------HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036 386 TKLVKLGSVNALLGMVNSGH--------MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQESCV 455 (546)
Q Consensus 386 ~~iv~~Gav~~Lv~lL~~~~--------~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~e~Av 455 (546)
..+.+.|+++.|+.++.+.. ..-..+....+++.... ..+.+ ...+..|..++.+ .+...+..|+
T Consensus 237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~--~~v~~~~p~~~~~l~~~~~s---~d~~~~~~A~ 311 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSP--QEVLELYPAFLERLFSMLES---QDPTIREVAF 311 (503)
T ss_pred HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHhCC---CChhHHHHHH
Confidence 99999999999999997532 22334567777776411 12221 2344455555555 4678899999
Q ss_pred HHHHHHhcCChhhHHH-HHHCCc----HHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcc
Q 009036 456 SVLYALSHGGLRFKGL-AAAAGM----AEVLMRMERVGSEHVKEKAKRMLELMKGRAEE 509 (546)
Q Consensus 456 ~~L~~L~~~~~~~~~~-~~~~g~----v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~ 509 (546)
.+|..+|...++...+ ....+. +..+.....++..++|.++...|..+-....+
T Consensus 312 dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 312 DTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred HHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC
Confidence 9999999766555545 333333 44455557778899999999999999655443
No 21
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.37 E-value=7.5e-11 Score=127.66 Aligned_cols=281 Identities=18% Similarity=0.116 Sum_probs=213.4
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh--hhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCch
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREE--TRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKIN 302 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~n 302 (546)
-+.|..||.+|.+.+.++|..|+.+|++|...+.. |+..+.+.++|+.|+.+|.. .|.++++.+..+|.||+..+..
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l 353 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL 353 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence 46788999999999999999999999999987665 99999999999999999986 7889999888888888765433
Q ss_pred HHH-------------------------------------------------------HHh-cCChHHHHHHHcc-----
Q 009036 303 KML-------------------------------------------------------IVR-SGLVPPIVDVLMA----- 321 (546)
Q Consensus 303 k~~-------------------------------------------------------i~~-~g~l~~Lv~lL~~----- 321 (546)
|.. +.+ .|.|..|+..++.
T Consensus 354 K~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 354 KMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 332 222 3778888887762
Q ss_pred -CCHHHHHHHHHHHhhcccccc------h--------------------------hhH---------Hh-----------
Q 009036 322 -GSAEAQEHACGAIFSLALDDQ------N--------------------------KTA---------IG----------- 348 (546)
Q Consensus 322 -~~~~~~~~Aa~~L~~Ls~~~~------~--------------------------k~~---------i~----------- 348 (546)
-+....+++..+|.||+.--+ . +.. |-
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence 267788999999999964311 0 000 00
Q ss_pred --hcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhcCc-----hhHHHH-HhcCcHHHHHHHHhCch--HHHHHHHHHHHh
Q 009036 349 --VLGALPPLLHLLK-SDSERTQHDSALALYHLSLVK-----SNRTKL-VKLGSVNALLGMVNSGH--MTGRVLLILGNL 417 (546)
Q Consensus 349 --~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~~Ls~~~-----~n~~~i-v~~Gav~~Lv~lL~~~~--~~e~al~~L~nL 417 (546)
...++..-+.+|. +.+..+.+.++.+|-||+... ..+..+ ....+.+.|+++|..++ +...+..+|.||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 0001112123333 246778889999999998632 245555 56689999999998754 899999999999
Q ss_pred hCCcccHHHHHhCCcHHHHHHHHccCCC---CCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC-CHHHH
Q 009036 418 ASCSDGRVAVLDSGGVECLVGMLRKGTE---LSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG-SEHVK 493 (546)
Q Consensus 418 a~~~e~r~~i~~~g~i~~Lv~lL~~~~~---~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~-s~~~k 493 (546)
+....+++.|. ..+++.|++.|..+.. .+++..-.++.+|+++...+.....-+.+.++++.|+.+..+. +++.-
T Consensus 594 s~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~ 672 (717)
T KOG1048|consen 594 SRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEF 672 (717)
T ss_pred ccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHH
Confidence 99999999887 7899999999988643 3577888889999999877766666677778899999886654 67888
Q ss_pred HHHHHHHHHhhcCC
Q 009036 494 EKAKRMLELMKGRA 507 (546)
Q Consensus 494 ~~A~~lL~~L~~~~ 507 (546)
+.|..+|..|=...
T Consensus 673 kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 673 KAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887775443
No 22
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.33 E-value=8e-13 Score=92.36 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=30.5
Q ss_pred CcccccccCCCeecCCCccccHHHHHHHHhcCC---CCCCCC
Q 009036 48 CPVSGSLMADPVVVSSGHTFERACAHVCKTLGF---TPTLVD 86 (546)
Q Consensus 48 CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~---~~cp~~ 86 (546)
||||+++|+|||+++|||+||+.||++|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999887532 368865
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.30 E-value=6.6e-10 Score=120.76 Aligned_cols=274 Identities=17% Similarity=0.138 Sum_probs=215.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH-HHHhcC
Q 009036 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM-LIVRSG 310 (546)
Q Consensus 232 lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~-~i~~~g 310 (546)
+...|.+.+.+....++..|..+..... .... ..+..+.|...|.++++.++..++..|.++..+.+... .+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~-~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALS-PDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccC-HHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 7777877777777888888888776432 1111 45778999999999999999999999999988766544 445779
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-chhHHHHH
Q 009036 311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLV 389 (546)
Q Consensus 311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-~~n~~~iv 389 (546)
.++.++..|.+++.++...|+.+|..|+.....-..+...+.+..|..++...+..++..+..++.+++.. ++....+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999998887766777777899999999887888888899999999875 45566666
Q ss_pred hcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCH-H---HHHHHHHHHHHHhc
Q 009036 390 KLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSE-S---TQESCVSVLYALSH 463 (546)
Q Consensus 390 ~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~-~---~~e~Av~~L~~L~~ 463 (546)
..|+++.++..|.+.+ ++..|+.+|..|+..+.|...+.+.|+++.|+.++.... .++ - .--..+....+++.
T Consensus 200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~-~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE-EDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc-cCCcccchhhhhHHHHHHHHHh
Confidence 6799999999999877 788999999999999999999999999999999998853 223 1 11122234444544
Q ss_pred C-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcccc
Q 009036 464 G-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEE 511 (546)
Q Consensus 464 ~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~ 511 (546)
. ...+.. .-+..+..|..++.+.++..+..|...|-.+....++..
T Consensus 279 ~~~~~v~~--~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~ 325 (503)
T PF10508_consen 279 VSPQEVLE--LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQ 325 (503)
T ss_pred cChHHHHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHH
Confidence 2 222222 223356677788889999999999999999987765544
No 24
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.21 E-value=8.2e-12 Score=114.94 Aligned_cols=63 Identities=24% Similarity=0.335 Sum_probs=54.0
Q ss_pred CCCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhc---------------CCCCCCCCCCCCCCCCCcccHHH
Q 009036 39 TAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL---------------GFTPTLVDGTTPDFSTVIPNLAL 101 (546)
Q Consensus 39 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~---------------~~~~cp~~~~~~~~~~l~pn~~l 101 (546)
..+..++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+..+....++|.+.-
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr 89 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR 89 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence 3466688999999999999999999999999999999842 12379999999998899998643
No 25
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.5e-09 Score=110.90 Aligned_cols=293 Identities=16% Similarity=0.225 Sum_probs=212.3
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
.+.+..||+.|.-++.+.-.-.+.-|..|+-. .+|+.-+.+.|.|+.|+++....+++++...+..|.||+.+..++.+
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 35567788888777777777777788887765 47899999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcCchh
Q 009036 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSLVKSN 384 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~~n 384 (546)
++..|.+|.|+.+|.+... ...|...|..++.++..|..+.-...++.|.+.+-.+ +.++-...+....|||.+..|
T Consensus 382 Mv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 9999999999999987643 3458889999999999999998888999998877654 444544444455678777776
Q ss_pred HHHHHhcCcHHHHHHH------------HhC-----c-----------------------hHHHHHHHHHHHhhCC----
Q 009036 385 RTKLVKLGSVNALLGM------------VNS-----G-----------------------HMTGRVLLILGNLASC---- 420 (546)
Q Consensus 385 ~~~iv~~Gav~~Lv~l------------L~~-----~-----------------------~~~e~al~~L~nLa~~---- 420 (546)
.+.+++..++..|++. +.. + ...-.|+++|.||...
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw 539 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW 539 (791)
T ss_pred ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence 6666655444444331 111 0 1344588888887652
Q ss_pred ---------------------------------------cccHHHHH-hCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036 421 ---------------------------------------SDGRVAVL-DSGGVECLVGMLRKGTELSESTQESCVSVLYA 460 (546)
Q Consensus 421 ---------------------------------------~e~r~~i~-~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~ 460 (546)
.+....+. .++.|+.++++|.... .+++..-..+.+...
T Consensus 540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~Q-eDDEfV~QiiyVF~Q 618 (791)
T KOG1222|consen 540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQ-EDDEFVVQIIYVFLQ 618 (791)
T ss_pred HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhc-ccchHHHHHHHHHHH
Confidence 11122333 4678888888887754 334444455555555
Q ss_pred HhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcc-------cc---ccCChHHHHhc
Q 009036 461 LSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE-------EE---EGVDWDELLDS 522 (546)
Q Consensus 461 L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~-------~~---~~~~~~~~~~~ 522 (546)
+..+....+-++.+...-.-|+.++++.+..+|+.+--+|-.+.....+ +. ...+|-+|.++
T Consensus 619 ~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~~EkFrwHNsQWLeMVEs 690 (791)
T KOG1222|consen 619 FLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIAGEKFRWHNSQWLEMVES 690 (791)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhHHHHHHHH
Confidence 5555434444556666667899999999999999999888888765432 11 45567666663
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.17 E-value=5.4e-10 Score=96.73 Aligned_cols=117 Identities=33% Similarity=0.336 Sum_probs=106.8
Q ss_pred HhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc
Q 009036 264 SLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ 342 (546)
Q Consensus 264 ~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~ 342 (546)
.+++.|+++.|+.+|.+.+..++..++.+|.+++.. ++....+.+.|+++.|+.+|.+.+++++..|+++|.+|+....
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356789999999999999999999999999999997 7888888899999999999999999999999999999998764
Q ss_pred -hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036 343 -NKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 343 -~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~ 380 (546)
....+...|+++.|+++|.+++.++++.++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 46666778999999999999999999999999999873
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=3.8e-11 Score=123.62 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=63.9
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQ 112 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~ 112 (546)
..+...|.||||.++|++||+++|||+||..||.+|+... ..||.|+..+....+.+|..|.++|+.|....
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 3566889999999999999999999999999999998753 47999999988778999999999999996543
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.15 E-value=7.5e-10 Score=95.82 Aligned_cols=115 Identities=28% Similarity=0.415 Sum_probs=103.4
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc-
Q 009036 305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK- 382 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~- 382 (546)
.+.+.|+++.|+.+|++++.+++..++.+|.+++.. ++....+.+.|+++.|+++|.+++++++..|+++|.+|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356789999999999999999999999999999988 567777778899999999999999999999999999999866
Q ss_pred hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036 383 SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS 419 (546)
Q Consensus 383 ~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~ 419 (546)
..+..++..|+++.|++++.+.+ +++.++.+|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 56777888899999999998754 89999999999974
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.13 E-value=4.8e-09 Score=106.10 Aligned_cols=283 Identities=17% Similarity=0.145 Sum_probs=209.0
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc----CC---HHHHHHHHHHHHHhh
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS----RY---TNVQVNAVAALVNLS 297 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s----~~---~~v~~~A~~~L~nLs 297 (546)
+.+.++.|.+...|++.++.++..+.|.+++..+.++|..+.+.|+-..++.+|+. ++ .+....+...|.|-.
T Consensus 85 ~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 85 DAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 35667777777788889999999999999999999999999999997777776652 33 345556677888877
Q ss_pred cC-CchHHHHHhcCChHHHHHHHccC----------------------------------------------CHHHHHHH
Q 009036 298 LE-KINKMLIVRSGLVPPIVDVLMAG----------------------------------------------SAEAQEHA 330 (546)
Q Consensus 298 ~~-~~nk~~i~~~g~l~~Lv~lL~~~----------------------------------------------~~~~~~~A 330 (546)
.+ ++-+.++++.|+++.|..++.-+ .+.+.+..
T Consensus 165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~ 244 (604)
T KOG4500|consen 165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI 244 (604)
T ss_pred CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence 75 56788888899988776443211 11223333
Q ss_pred HHHHhhcccccchhhHHhhcCChHHHHHhhcc-CCH-------HHHHHHHHHHHHhhcCchhHHHHHhcC-cHHHHHHHH
Q 009036 331 CGAIFSLALDDQNKTAIGVLGALPPLLHLLKS-DSE-------RTQHDSALALYHLSLVKSNRTKLVKLG-SVNALLGMV 401 (546)
Q Consensus 331 a~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~-~~~-------~~~~~A~~aL~~Ls~~~~n~~~iv~~G-av~~Lv~lL 401 (546)
..+|...+.++..|-.+.+.|.++.++++++. .+. ...+.++....-|...++.-.++...+ .++.++.-+
T Consensus 245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence 34455555666667777788889999998876 211 222333333333444455556666665 788888888
Q ss_pred hCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccC--CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCc
Q 009036 402 NSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG--TELSESTQESCVSVLYALSHGGLRFKGLAAAAGM 477 (546)
Q Consensus 402 ~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~--~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~ 477 (546)
.+.+ ..-...-+|.|+++.++....+++.+.+..|+..|... ..++-+.+..++++|.++.--- ..+..+..+|+
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGv 403 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGV 403 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhccccch
Confidence 7654 56666778899999999999999999999999988762 2345677888999999997632 34667788999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 478 AEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 478 v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
.+.++.+++...|++.-+-...|+++....+
T Consensus 404 teaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 404 TEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 9999999999999999999999999887665
No 30
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.2e-09 Score=111.62 Aligned_cols=176 Identities=20% Similarity=0.236 Sum_probs=152.6
Q ss_pred HHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHH
Q 009036 287 VNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSER 366 (546)
Q Consensus 287 ~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~ 366 (546)
..|+-.|.||+.+-....++.+...+..||..|...+.++.......|..|+...++|..+.+.|.++.|++++...+++
T Consensus 281 rva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~d 360 (791)
T KOG1222|consen 281 RVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPD 360 (791)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHH
Confidence 45667789999988888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCC
Q 009036 367 TQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTEL 446 (546)
Q Consensus 367 ~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~ 446 (546)
.++..+..|+||+....++.+||..|.+|.|+.+|.+..-..-|+.+|..++-....+..+....+|+.+++.+..+.
T Consensus 361 L~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~-- 438 (791)
T KOG1222|consen 361 LRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGT-- 438 (791)
T ss_pred HHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 999999999999999999999999999999999998877677799999999998888888889999999999988763
Q ss_pred CHHHHHHHHHHHHHHhcC
Q 009036 447 SESTQESCVSVLYALSHG 464 (546)
Q Consensus 447 s~~~~e~Av~~L~~L~~~ 464 (546)
+.++....++.-.+||..
T Consensus 439 ~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 439 GSEVDLALIALCINLCLN 456 (791)
T ss_pred CceecHHHHHHHHHHHhc
Confidence 223322223333566653
No 31
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.09 E-value=1.6e-08 Score=105.95 Aligned_cols=275 Identities=14% Similarity=0.095 Sum_probs=203.9
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR-YTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
....++..|...+.-++..|+..|..+...+..+.......-.+..|...|.+. +...+..++.+|..|...+..|..+
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f 181 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF 181 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence 356677788888899999999999988765432211111111344566666654 5777888889999999999999999
Q ss_pred HhcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcCc-
Q 009036 307 VRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSLVK- 382 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~- 382 (546)
.+.++++.|+.+|+.. +.+++-+++-+++-|+..++........+.|+.|+++++.. ..++.+.++.+|.||....
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 9888999999999864 57889999999999999988766666689999999999874 6778899999999998743
Q ss_pred ------hhHHHHHhcCcHHHHHHHHhC----chH-------HHHHHHHHHHhhCC------------------------c
Q 009036 383 ------SNRTKLVKLGSVNALLGMVNS----GHM-------TGRVLLILGNLASC------------------------S 421 (546)
Q Consensus 383 ------~n~~~iv~~Gav~~Lv~lL~~----~~~-------~e~al~~L~nLa~~------------------------~ 421 (546)
.....|+..|+.+.+-.+... +++ .+.--..+..|++. .
T Consensus 262 ~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 262 DREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred ccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 245677887877766555443 222 12222222333321 2
Q ss_pred ccHHHHHhCC--cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHH
Q 009036 422 DGRVAVLDSG--GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRM 499 (546)
Q Consensus 422 e~r~~i~~~g--~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~l 499 (546)
||...+-+.+ .+..|+++|..+ .++....-|+.=+..++...+..+.++.+.|+=..+++++.+.++++|..|..+
T Consensus 342 EN~~kf~~~~~~llk~L~~iL~~s--~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~a 419 (429)
T cd00256 342 ENADRLNEKNYELLKILIHLLETS--VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLA 419 (429)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcC--CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 4556666544 678999999654 345666667777788888777888999999999999999999999999999999
Q ss_pred HHHhh
Q 009036 500 LELMK 504 (546)
Q Consensus 500 L~~L~ 504 (546)
++.|-
T Consensus 420 vQklm 424 (429)
T cd00256 420 VQKLM 424 (429)
T ss_pred HHHHH
Confidence 98764
No 32
>PRK09687 putative lyase; Provisional
Probab=99.07 E-value=9.9e-09 Score=103.00 Aligned_cols=221 Identities=15% Similarity=0.102 Sum_probs=128.6
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHH-HccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSL-IISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~l-L~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
.++.+.+.+++.++.+|..|++.|..+...... ....++.|..+ +.++++.++..|+.+|.++.......
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--- 125 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--- 125 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---
Confidence 344455555566666666666666655432110 11245555554 44556666666666666654321110
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT 386 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~ 386 (546)
...++..+...+.+.+..+|..|+.+|..+ ....+++.|+.+|.+.+..++..|+.+|.++....
T Consensus 126 -~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---- 190 (280)
T PRK09687 126 -SPKIVEQSQITAFDKSTNVRFAVAFALSVI----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---- 190 (280)
T ss_pred -chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC----
Confidence 011234444555555666666666666544 22346677777777777777777777777662211
Q ss_pred HHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036 387 KLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG 464 (546)
Q Consensus 387 ~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~ 464 (546)
..+++.|+.+|.+.+ ++..|+..|..+-. ..+++.|++.|..+ + .+..|+.+|..+-..
T Consensus 191 ----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 191 ----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred ----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 135666777776544 66666666655321 25678888888773 1 345566666655321
Q ss_pred ChhhHHHHHHCCcHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 009036 465 GLRFKGLAAAAGMAEVLMRMER-VGSEHVKEKAKRMLEL 502 (546)
Q Consensus 465 ~~~~~~~~~~~g~v~~L~~ll~-~~s~~~k~~A~~lL~~ 502 (546)
.+++.|..++. +.+++++.+|.+.|..
T Consensus 252 -----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -----------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred -----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 26788888886 7899999999888764
No 33
>PRK09687 putative lyase; Provisional
Probab=99.06 E-value=1.7e-08 Score=101.33 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=167.4
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
-.+++|+..|.+.+..++..|+..|..+-. ..+++.+..++.+.++.++..|+.+|..|......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 456889999999999999999999976653 35688889999999999999999999998643222
Q ss_pred HhcCChHHHHHH-HccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036 307 VRSGLVPPIVDV-LMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR 385 (546)
Q Consensus 307 ~~~g~l~~Lv~l-L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~ 385 (546)
....++.|..+ +++.++.+|..|+.+|.++....... ...+++.|...+.+++..++..|+.+|..+..
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----- 157 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND----- 157 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----
Confidence 12357788877 56779999999999999985432211 12245667777888899999999999976532
Q ss_pred HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 386 TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 386 ~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
..+++.|+.+|.+.+ ++..|+..|..+.... ..+++.|+.+|.+ .+..++..|+..|..+-.
T Consensus 158 -----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 158 -----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQD---KNEEIRIEAIIGLALRKD 221 (280)
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcC---CChHHHHHHHHHHHccCC
Confidence 237999999998765 8889999998883321 1466788999977 568899999999876532
Q ss_pred CChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 464 GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 464 ~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
. .+++.|+..++++. ++..|...|-.+-
T Consensus 222 ~-----------~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 222 K-----------RVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred h-----------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 1 26788888888776 4445555555543
No 34
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.01 E-value=2.4e-08 Score=102.27 Aligned_cols=246 Identities=19% Similarity=0.176 Sum_probs=163.4
Q ss_pred HHHHhccChhhhHHhhcC---ChHHHHHHHHc--cCCHHHHHHHHHHHHHhhcCC-chHHHHHh------cCChHHHHHH
Q 009036 251 LRKLTRSREETRVSLCTP---RLLLALRSLII--SRYTNVQVNAVAALVNLSLEK-INKMLIVR------SGLVPPIVDV 318 (546)
Q Consensus 251 L~~La~~~~~~r~~l~~~---g~i~~Lv~lL~--s~~~~v~~~A~~~L~nLs~~~-~nk~~i~~------~g~l~~Lv~l 318 (546)
|+.+-+.....|..+.+. +....++.+|. +.+.++....+..+..|..++ .....+.. .....+++.+
T Consensus 34 ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~l 113 (312)
T PF03224_consen 34 IKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKL 113 (312)
T ss_dssp HHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHH
Confidence 333333333444444442 23556666665 368888899999998887754 44444433 1367888888
Q ss_pred HccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhcc----CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcH
Q 009036 319 LMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKS----DSERTQHDSALALYHLSLVKSNRTKLVKLGSV 394 (546)
Q Consensus 319 L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~----~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav 394 (546)
+.+++..++..|+.+|..|......+..-...+.++.++..|.+ ++.+.+..|+.+|.+|...++.|..+.+.|++
T Consensus 114 l~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v 193 (312)
T PF03224_consen 114 LDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGV 193 (312)
T ss_dssp -S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcH
Confidence 99999999999999999998776544333235677888888875 34456688999999999999999999999999
Q ss_pred HHHHHHH------hCch---HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC
Q 009036 395 NALLGMV------NSGH---MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG 465 (546)
Q Consensus 395 ~~Lv~lL------~~~~---~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~ 465 (546)
+.|+.+| .... +..+++-++|.|+-+++....+.+.+.|+.|+++++.. ..+++..-++++|.|++...
T Consensus 194 ~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~--~KEKvvRv~la~l~Nl~~~~ 271 (312)
T PF03224_consen 194 SPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDS--IKEKVVRVSLAILRNLLSKA 271 (312)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhc--ccchHHHHHHHHHHHHHhcc
Confidence 9999999 2221 78899999999999999999999988999999999986 45888899999999999854
Q ss_pred h-hhHHHHHHCCcHHHHHHHHhcC--CHHHHHHHHH
Q 009036 466 L-RFKGLAAAAGMAEVLMRMERVG--SEHVKEKAKR 498 (546)
Q Consensus 466 ~-~~~~~~~~~g~v~~L~~ll~~~--s~~~k~~A~~ 498 (546)
. .....+...|+++.|-.|.... ++++.+--..
T Consensus 272 ~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 272 PKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEF 307 (312)
T ss_dssp STTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3 3666677777666666664433 5555554433
No 35
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.5e-07 Score=101.49 Aligned_cols=279 Identities=13% Similarity=0.142 Sum_probs=208.1
Q ss_pred CchhHHHHHHhcCCCC-HHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhhcCCc
Q 009036 225 SNEQEDYFVQKLKSPQ-VHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS--RYTNVQVNAVAALVNLSLEKI 301 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~ 301 (546)
.+++++.|+.++.+.. .++|+.|+..|..+++ ..|..+... ++++|+..|.. .|+++...++.++.++..+++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 3688999999996554 6899999999999997 456555544 57788888865 489999999999999887542
Q ss_pred ------h-H----------HHHH-hcCChHHHHHHHccCCHHHHHHHHHHHhhccccc--chhhHHhh-cCChHHHHHhh
Q 009036 302 ------N-K----------MLIV-RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD--QNKTAIGV-LGALPPLLHLL 360 (546)
Q Consensus 302 ------n-k----------~~i~-~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~-~g~l~~Lv~lL 360 (546)
+ + +.+. ..+.|..|+..+...+..+|.++..+|.+|.... +.+..+.. +-+|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 1 2 1122 4578999999999999999999999999986654 45666654 78999999999
Q ss_pred ccCCHHHHHHHHHHHHHhhcCchhHHHHHhc-CcHHHHHHHHhCc------hHHHHHHHHHHHhhC-CcccHHHHHhCCc
Q 009036 361 KSDSERTQHDSALALYHLSLVKSNRTKLVKL-GSVNALLGMVNSG------HMTGRVLLILGNLAS-CSDGRVAVLDSGG 432 (546)
Q Consensus 361 ~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~-Gav~~Lv~lL~~~------~~~e~al~~L~nLa~-~~e~r~~i~~~g~ 432 (546)
.+....+|.+|+..|..|.....+.+++|.. +++..|..++... -+.+.|+..|-||-. +..+...|.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 9988888899999999999988888888888 9999999999752 289999999999996 4567777888999
Q ss_pred HHHHHHHHccCCCCC-------HHHHH---HHHHHHHHHhc-CC-----hhhHHHHHHCCcHHHHHHHHhcC--CHHHHH
Q 009036 433 VECLVGMLRKGTELS-------ESTQE---SCVSVLYALSH-GG-----LRFKGLAAAAGMAEVLMRMERVG--SEHVKE 494 (546)
Q Consensus 433 i~~Lv~lL~~~~~~s-------~~~~e---~Av~~L~~L~~-~~-----~~~~~~~~~~g~v~~L~~ll~~~--s~~~k~ 494 (546)
||.|.++|......+ +.-.. .++.++..+.. ++ ..++.++.+.+++..|..++.+. ..+++.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 999999986532222 22222 23333444433 22 13445778888999999886655 344555
Q ss_pred HHHHHHHHhhcCC
Q 009036 495 KAKRMLELMKGRA 507 (546)
Q Consensus 495 ~A~~lL~~L~~~~ 507 (546)
.+.-.+..+-+..
T Consensus 336 esiitvAevVRgn 348 (970)
T KOG0946|consen 336 ESIITVAEVVRGN 348 (970)
T ss_pred HHHHHHHHHHHhc
Confidence 5544444444433
No 36
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.96 E-value=3.6e-10 Score=77.93 Aligned_cols=38 Identities=29% Similarity=0.497 Sum_probs=32.6
Q ss_pred CcccccccCCC-eecCCCccccHHHHHHHHhcCCCCCCCC
Q 009036 48 CPVSGSLMADP-VVVSSGHTFERACAHVCKTLGFTPTLVD 86 (546)
Q Consensus 48 CpI~~~~m~dP-V~~~~G~ty~r~~i~~~~~~~~~~cp~~ 86 (546)
||||.+.++|| |+++|||+||+.||++|++. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999987 5678865
No 37
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=5.9e-10 Score=105.00 Aligned_cols=78 Identities=26% Similarity=0.246 Sum_probs=71.7
Q ss_pred CCCCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009036 38 QTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLN 115 (546)
Q Consensus 38 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~ 115 (546)
.+.++|+.++|.|+.++|+|||++|+|.||+|.-|+..+..-..-.|+++.++....++||++|+..|..|...|.|.
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 357899999999999999999999999999999999999876666778899999999999999999999999999874
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.87 E-value=4.1e-07 Score=105.82 Aligned_cols=228 Identities=15% Similarity=0.092 Sum_probs=142.0
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM 304 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~ 304 (546)
+...++.|+..|++.++.+|..|+..|..+.. .++++.|+.+|.+++..++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence 46677899999999999999999999987643 357899999999999999999998887763211
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-----------ch--h----hHHhhcCChHHHHHhhccCCHHH
Q 009036 305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-----------QN--K----TAIGVLGALPPLLHLLKSDSERT 367 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-----------~~--k----~~i~~~g~l~~Lv~lL~~~~~~~ 367 (546)
...+.|...|.+.++.+|..|+.+|..+...+ +. + ..++..+..+.|..++.+++..+
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V 758 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV 758 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence 12245556666666777777766665542110 00 0 00000112233444444444555
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCC
Q 009036 368 QHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTE 445 (546)
Q Consensus 368 ~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~ 445 (546)
+..++.+|..+... ....++.|..++.+++ ++..|+..|..+...+ ..+..|+..|.+
T Consensus 759 R~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d--- 818 (897)
T PRK13800 759 RIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAAATAALRA--- 818 (897)
T ss_pred HHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcC---
Confidence 55555554444221 1123566777776544 6666776666653321 122446666665
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009036 446 LSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELM 503 (546)
Q Consensus 446 ~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L 503 (546)
.+..++..|+.+|..+... ..++.|+.++.+.+..+|..|...|..+
T Consensus 819 ~d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 819 SAWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred CChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 3466777777777665322 2457888888888888888888888776
No 39
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.84 E-value=1.4e-09 Score=75.87 Aligned_cols=31 Identities=26% Similarity=0.697 Sum_probs=21.9
Q ss_pred CcccccccCC----CeecCCCccccHHHHHHHHhcC
Q 009036 48 CPVSGSLMAD----PVVVSSGHTFERACAHVCKTLG 79 (546)
Q Consensus 48 CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~ 79 (546)
||||.+ |.+ |++|+|||+||+.||+++++.+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 999999 999 9999999999999999998754
No 40
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.83 E-value=2.8e-07 Score=93.59 Aligned_cols=279 Identities=15% Similarity=0.056 Sum_probs=199.6
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-C-------CHHHHHHHHHHHHHh
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-R-------YTNVQVNAVAALVNL 296 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-~-------~~~v~~~A~~~L~nL 296 (546)
+.+....+++.|.+.-.+...+-+-.+..-+.+++..+-.++++|.+.-++.++.. . ....-..++..+.-|
T Consensus 221 d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vll 300 (604)
T KOG4500|consen 221 DCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLL 300 (604)
T ss_pred cchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhh
Confidence 34556677777755543334444444444555678899999999999999999874 1 123334555666666
Q ss_pred hcCCchHHHHHhcC-ChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhcc-----CCHHHHHH
Q 009036 297 SLEKINKMLIVRSG-LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKS-----DSERTQHD 370 (546)
Q Consensus 297 s~~~~nk~~i~~~g-~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~-----~~~~~~~~ 370 (546)
...++...++...+ +++.++..+.+.+......++-+|.|++..+++...+.+.+.+..|+.+|.. ++.+.+..
T Consensus 301 ltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA 380 (604)
T KOG4500|consen 301 LTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHA 380 (604)
T ss_pred hcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHH
Confidence 77777777777666 8999999999999999999999999999999999999999999999999854 47788889
Q ss_pred HHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC--chHHHHHHHHHHHhhCCcc-cHHHHHhC-CcHHHHHHHHccCCCC
Q 009036 371 SALALYHLSLVKSNRTKLVKLGSVNALLGMVNS--GHMTGRVLLILGNLASCSD-GRVAVLDS-GGVECLVGMLRKGTEL 446 (546)
Q Consensus 371 A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e-~r~~i~~~-g~i~~Lv~lL~~~~~~ 446 (546)
++.+|+||...-.|+..+..+|++..++.++.. +.++-+-++.|..+-...+ ...++..+ ..+..|++--++. +
T Consensus 381 ~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~--D 458 (604)
T KOG4500|consen 381 CLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSP--D 458 (604)
T ss_pred HHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCC--c
Confidence 999999999999999999999999999999875 4477777777776654333 22223322 2444555444442 1
Q ss_pred CHHHHHHHHHHHHHHhcCC--hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 447 SESTQESCVSVLYALSHGG--LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 447 s~~~~e~Av~~L~~L~~~~--~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
-..+.-...+.|..+-.++ .++...+-+.|+++.++.++....-..+..|.-+|..+..
T Consensus 459 ~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 459 FAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred cchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 1223334455555555543 2333445567889999999888877777777777776654
No 41
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.79 E-value=3.9e-09 Score=73.65 Aligned_cols=39 Identities=28% Similarity=0.536 Sum_probs=35.4
Q ss_pred CcccccccCCCe-ecCCCccccHHHHHHHHh-cCCCCCCCC
Q 009036 48 CPVSGSLMADPV-VVSSGHTFERACAHVCKT-LGFTPTLVD 86 (546)
Q Consensus 48 CpI~~~~m~dPV-~~~~G~ty~r~~i~~~~~-~~~~~cp~~ 86 (546)
||||.+.+.+|+ +++|||+||+.||.+|++ .+..+||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 556689875
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=6.4e-07 Score=97.48 Aligned_cols=258 Identities=17% Similarity=0.147 Sum_probs=194.7
Q ss_pred hhHHHHHHhcCCC-CHHHHHHHHHHHHHHh-ccChhhhHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhhcC-Cch
Q 009036 227 EQEDYFVQKLKSP-QVHEVEEALISLRKLT-RSREETRVSLCTPRLLLALRSLIISR-YTNVQVNAVAALVNLSLE-KIN 302 (546)
Q Consensus 227 ~~i~~lv~~L~s~-~~~~~~~Al~~L~~La-~~~~~~r~~l~~~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~-~~n 302 (546)
..+..|+..|... ++-.|.+|+..|.++. ..+++.-..+--.-++|.|+.+|... +.+++-.|+++|.+|+.. +..
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 4678889988655 8889999999999754 34443333333456899999999864 789999999999999985 788
Q ss_pred HHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036 303 KMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 381 (546)
...+++.++||.|+.-|..- -.++-+.++.+|..++.... ..|.+.|+|...+..|.--+..+++.|+.+-.|.|..
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888999999999977654 67889999999999987543 3466789999999998877788999999999999972
Q ss_pred --chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC----CcccHHHHHhCCcHHHHHHHHccCCC-CCHHHHH
Q 009036 382 --KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS----CSDGRVAVLDSGGVECLVGMLRKGTE-LSESTQE 452 (546)
Q Consensus 382 --~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~----~~e~r~~i~~~g~i~~Lv~lL~~~~~-~s~~~~e 452 (546)
.+.-.-+++ ++|.|..+|...+ ..|.++-++..++. .++--+++..+|.|..+.++|....+ -+.....
T Consensus 325 i~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 325 IRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred CCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 222223333 6999999998644 66777777776664 44556677789999999999876421 1334556
Q ss_pred HHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC
Q 009036 453 SCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG 488 (546)
Q Consensus 453 ~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~ 488 (546)
-.+..|..+|.+.+-........++...|..++..-
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 677778888888665566666677788888877654
No 43
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.77 E-value=3e-09 Score=79.27 Aligned_cols=43 Identities=28% Similarity=0.395 Sum_probs=30.6
Q ss_pred CceeCcccccccCCCeec-CCCccccHHHHHHHHhc-CCCCCCCC
Q 009036 44 GEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTL-GFTPTLVD 86 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~-~~~~cp~~ 86 (546)
..|.||||+..|+|||+. .|||+|+|++|.+|+.. +...||..
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 468999999999999995 99999999999999954 34478874
No 44
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.76 E-value=3.5e-07 Score=93.69 Aligned_cols=222 Identities=18% Similarity=0.150 Sum_probs=161.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc------CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchH
Q 009036 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT------PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINK 303 (546)
Q Consensus 230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~------~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk 303 (546)
-.+++.+ +.+.+...-.+..|..+..+++.....+.+ .....+++.++.++|..++..|+.+|..|......+
T Consensus 61 l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~ 139 (312)
T PF03224_consen 61 LNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKR 139 (312)
T ss_dssp -HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT-
T ss_pred HHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 3555555 567888888999999998888766666654 125777888999999999999999999988754333
Q ss_pred HHHHhcCChHHHHHHHcc----CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc-----c--CCHHHHHHHH
Q 009036 304 MLIVRSGLVPPIVDVLMA----GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK-----S--DSERTQHDSA 372 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL~~----~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~-----~--~~~~~~~~A~ 372 (546)
..-...+.++.++..|.+ .+.+.+..++.+|.+|...+++|..+.+.++++.|+.+|. + .+.+..-.++
T Consensus 140 ~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~l 219 (312)
T PF03224_consen 140 SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQAL 219 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHH
Confidence 322224567888888775 3456778999999999999999999999999999999992 2 2556777899
Q ss_pred HHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc---hHHHHHHHHHHHhhCCcc--cHHHHHhCCcHHHHHHHHccCCCCC
Q 009036 373 LALYHLSLVKSNRTKLVKLGSVNALLGMVNSG---HMTGRVLLILGNLASCSD--GRVAVLDSGGVECLVGMLRKGTELS 447 (546)
Q Consensus 373 ~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~---~~~e~al~~L~nLa~~~e--~r~~i~~~g~i~~Lv~lL~~~~~~s 447 (546)
.++|-|+.+++....+...+.|+.|++++... .+..-++++|.||..... ....++..|+++.+-.+..+. ..+
T Consensus 220 l~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk-~~D 298 (312)
T PF03224_consen 220 LCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK-WSD 298 (312)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS---SS
T ss_pred HHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC-CCC
Confidence 99999999999999999999999999999763 277889999999998776 778888877776665555542 345
Q ss_pred HHHHHH
Q 009036 448 ESTQES 453 (546)
Q Consensus 448 ~~~~e~ 453 (546)
++..+-
T Consensus 299 edl~ed 304 (312)
T PF03224_consen 299 EDLTED 304 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.76 E-value=1.9e-09 Score=80.31 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=33.3
Q ss_pred CceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 009036 44 GEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTI 105 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i 105 (546)
+-++|++|.++|++||.+ .|.|.||+.||.+.+.. -||+|..+-...++.-|..|.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 346899999999999975 99999999999775442 499999998888999999998886
No 46
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.71 E-value=6.1e-09 Score=101.65 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=61.1
Q ss_pred CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009036 41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCH 110 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~ 110 (546)
.+..-++|-||.++|+-||++|||||||.-||.+++. ....||.|..+..+..|+-|+.|..+|+.+-.
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 4557789999999999999999999999999999886 44568889888899999999999999998843
No 47
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.67 E-value=3.4e-06 Score=98.20 Aligned_cols=227 Identities=17% Similarity=0.088 Sum_probs=150.2
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC-----
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK----- 300 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~----- 300 (546)
...++.|+..|++.++.++..|+..|..+.... ...+.|..+|.++++.++..|+.+|..+....
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~ 720 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA 720 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence 456788999999999999999999998774321 11245556666666667666666665442110
Q ss_pred ------c--hHHH----HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHH
Q 009036 301 ------I--NKML----IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQ 368 (546)
Q Consensus 301 ------~--nk~~----i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~ 368 (546)
+ .|.. +.+.+..+.|...|.+.++++|..++.+|..+... ....++.|..+++++++.++
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVR 792 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHH
Confidence 0 0000 00011223344445555555555555555544221 12247889999999999999
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCC
Q 009036 369 HDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTEL 446 (546)
Q Consensus 369 ~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~ 446 (546)
..|+.+|.++.... .++..|+..|.+.+ ++..|+.+|..+.. ...++.|+.+|.+ .
T Consensus 793 ~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D---~ 850 (897)
T PRK13800 793 AAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTD---P 850 (897)
T ss_pred HHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcC---C
Confidence 99999998874321 12356778887765 88889999876542 3466899999988 5
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009036 447 SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLEL 502 (546)
Q Consensus 447 s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~ 502 (546)
+..++..|+.+|..+- .++ ...+.|...+.+.++.+|..|...|..
T Consensus 851 ~~~VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 851 HLDVRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred CHHHHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 6899999999998762 111 145678889999999999999998863
No 48
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.61 E-value=4.2e-06 Score=85.28 Aligned_cols=270 Identities=13% Similarity=0.061 Sum_probs=200.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCC----hHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchH
Q 009036 229 EDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPR----LLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINK 303 (546)
Q Consensus 229 i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g----~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk 303 (546)
....++.|...++-.+..+.+.|..++..+... .+.+ ....|..++.+ .+.+....|+.+|-.+...++.|
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR 191 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYR 191 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchh
Confidence 467788888888877877888888877654311 1111 23344555655 56677777888999999999999
Q ss_pred HHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhc
Q 009036 304 MLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSL 380 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~ 380 (546)
..++...++..++.+|.++ +..++-+.+-.++-|+.++...+.+...+.|+.|.+++++. ..++.+..+.++.|++.
T Consensus 192 ~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 192 YAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred heeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998433 78999999999999999988888887789999999999875 66788899999999988
Q ss_pred Cc-------hhHHHHHhcCcHHHHHHHHhC----ch-------HHHHHHHHHHHhhCC----------------------
Q 009036 381 VK-------SNRTKLVKLGSVNALLGMVNS----GH-------MTGRVLLILGNLASC---------------------- 420 (546)
Q Consensus 381 ~~-------~n~~~iv~~Gav~~Lv~lL~~----~~-------~~e~al~~L~nLa~~---------------------- 420 (546)
.. ..+..|+..++.+.+-.+... .+ +++.--.-...|++.
T Consensus 272 k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred cCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence 65 344566776766666555543 22 222222222233331
Q ss_pred --cccHHHHHhCC--cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHH
Q 009036 421 --SDGRVAVLDSG--GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKA 496 (546)
Q Consensus 421 --~e~r~~i~~~g--~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A 496 (546)
.+|...+-+.+ .+..|+++|... .++..-.-|+.=+....+..++.+.++.+-|+-+.++.++.+.++++|-+|
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~s--~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~A 429 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLETS--NDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHA 429 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhcC--CCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHH
Confidence 23455565544 788999999885 345555666666677777777889999999999999999999999999999
Q ss_pred HHHHHHhh
Q 009036 497 KRMLELMK 504 (546)
Q Consensus 497 ~~lL~~L~ 504 (546)
..+++.|-
T Consensus 430 LlavQ~lm 437 (442)
T KOG2759|consen 430 LLAVQKLM 437 (442)
T ss_pred HHHHHHHH
Confidence 99998764
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.2e-06 Score=84.97 Aligned_cols=182 Identities=19% Similarity=0.177 Sum_probs=148.4
Q ss_pred CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHH
Q 009036 237 KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPI 315 (546)
Q Consensus 237 ~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~L 315 (546)
.+.+.+.++.|+..|..+... -.|-..+...|++..|+..+.+.+.++++.|+++|...+.+ +..+..+.+.|+++.|
T Consensus 93 ~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 456789999999999999874 56778889999999999999999999999999999998885 8899999999999999
Q ss_pred HHHHccC-CHHHHHHHHHHHhhcccccc-hhhHHhhcCChHHHHHhhcc--CCHHHHHHHHHHHHHhhcC-chhHHHHHh
Q 009036 316 VDVLMAG-SAEAQEHACGAIFSLALDDQ-NKTAIGVLGALPPLLHLLKS--DSERTQHDSALALYHLSLV-KSNRTKLVK 390 (546)
Q Consensus 316 v~lL~~~-~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~l~~Lv~lL~~--~~~~~~~~A~~aL~~Ls~~-~~n~~~iv~ 390 (546)
+.+|.+. +..++..|..++.+|..+.. ....+...++...|..+|.+ .+...+..++..|..|... ...+..+-.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999866 66788999999999988764 46666667789999999998 5788889999999998763 344554445
Q ss_pred cCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036 391 LGSVNALLGMVNSGH--MTGRVLLILGNLAS 419 (546)
Q Consensus 391 ~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~ 419 (546)
.|....+..+....+ ..+.++..+..+..
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 577777777776543 67777766655543
No 50
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.8e-08 Score=101.14 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=61.5
Q ss_pred CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009036 41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLN 115 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~ 115 (546)
...+++.||||++.|++|++++|||+||+.||..++. ....||.|+. ... .+.+|..+.++++.....+...
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~~ 80 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLSR 80 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCcc
Confidence 4568899999999999999999999999999999887 5568999986 333 7889999999999988766543
No 51
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=9.5e-06 Score=81.66 Aligned_cols=181 Identities=21% Similarity=0.261 Sum_probs=148.4
Q ss_pred cCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHH
Q 009036 280 SRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLH 358 (546)
Q Consensus 280 s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~ 358 (546)
+.+.+-++.|+.-|..+..+-+|...+...|++.+++..|.+.+.++|..|+++|...+.++ ..+..+.+.|+++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 45778888899989988888899999999999999999999999999999999999988765 56888889999999999
Q ss_pred hhccC-CHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHHhCch----HHHHHHHHHHHhhCCcccHHHHHh-CC
Q 009036 359 LLKSD-SERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGH----MTGRVLLILGNLASCSDGRVAVLD-SG 431 (546)
Q Consensus 359 lL~~~-~~~~~~~A~~aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa~~~e~r~~i~~-~g 431 (546)
+|.++ +..++..|+.|+++|-.+ ......+...++...|...+.+++ ++.+++..+..|.........++. .+
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 99875 566779999999999884 456788888888999999998843 788899999999865444333554 56
Q ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 432 GVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
.-..++.+... .+.+..+.++.++..+..
T Consensus 254 f~~~~~~l~~~---l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 254 FQRVLENLISS---LDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhHHHHHHhhc---cchhhhHHHHHHHHHHHH
Confidence 66666666666 457888999888877654
No 52
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1.5e-05 Score=78.21 Aligned_cols=272 Identities=19% Similarity=0.174 Sum_probs=189.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
...+++..|.+.++.++..|+..+..++.. ..+.... +.-.++.|..++...++ -+.|+.+|.|++.++.-++.+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 346789999999999999999999888875 2222222 34567888888876666 667999999999999888888
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--c----CChHHHHHh-hccC-CHH-HHHHHHHHHHH
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--L----GALPPLLHL-LKSD-SER-TQHDSALALYH 377 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~----g~l~~Lv~l-L~~~-~~~-~~~~A~~aL~~ 377 (546)
... .+..+++++.+.....-...+.+|.||+.++.....+.. . .++..|+.. ...+ +.. -....+-.+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 877 888888988887555666788999999998865444422 1 344444444 4333 311 22455668889
Q ss_pred hhcCchhHHHHHhcCcHH--HHHHHHhCch-H-HHHHHHHHHHhhCCcccHHHHHhC--CcHHHHHHH------------
Q 009036 378 LSLVKSNRTKLVKLGSVN--ALLGMVNSGH-M-TGRVLLILGNLASCSDGRVAVLDS--GGVECLVGM------------ 439 (546)
Q Consensus 378 Ls~~~~n~~~iv~~Gav~--~Lv~lL~~~~-~-~e~al~~L~nLa~~~e~r~~i~~~--g~i~~Lv~l------------ 439 (546)
|+.....|.-+.....++ .|..+-..++ + +...+++|.|.|-.......++.. ..++.|+-=
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 999888888777765222 2222222122 3 345889999998877777777752 234444322
Q ss_pred ---------Hc--cCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhhc
Q 009036 440 ---------LR--KGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMER-VGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 440 ---------L~--~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~-~~s~~~k~~A~~lL~~L~~ 505 (546)
|. .....++.++..-+.+|..||... ..++.++.-|+.+.|.++-. ..++.+++.+-.+...|-+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 21 111146788889999999999754 56788888898888888844 4588899998888888876
No 53
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.8e-08 Score=92.41 Aligned_cols=58 Identities=28% Similarity=0.338 Sum_probs=51.8
Q ss_pred CCceeCcccccccCCCeecCCCccccHHHHHHHHhc--CCCCCCCCCCCCCCCCCcccHH
Q 009036 43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL--GFTPTLVDGTTPDFSTVIPNLA 100 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~~~~~~~~~l~pn~~ 100 (546)
-..|-|-||++.=+|||++.|||=||=.||-+|+.. +...||+|+...+.+.++|=+.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 478999999999999999999999999999999974 4457899999899889999764
No 54
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=5.7e-06 Score=93.50 Aligned_cols=243 Identities=14% Similarity=0.169 Sum_probs=168.1
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC--CchH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE--KINK 303 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~nk 303 (546)
...++.+-.+|.+.+|..|..|+.+|..++..+.+.-.... ..+++.++..|.++++.||..|+.+|..++.+ ++..
T Consensus 347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence 34566777888999999999999999999987654332211 45788888899999999999999999999987 4444
Q ss_pred HHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHh--hcCChHHHHH-hhccCCHHHHHHHHHHHHHhh
Q 009036 304 MLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIG--VLGALPPLLH-LLKSDSERTQHDSALALYHLS 379 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~l~~Lv~-lL~~~~~~~~~~A~~aL~~Ls 379 (546)
++. ..-.++.|+..+.+. +++++.+|+.+|.+++..... ..|. -.+.++.++. ++.++.+.++..++.+|...+
T Consensus 426 k~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 426 KKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 443 344788999999876 899999999999999775433 2222 2456663444 446678999999999999998
Q ss_pred cCchhHHHHHhcCcHHHHHHHHhCc---h---HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHH
Q 009036 380 LVKSNRTKLVKLGSVNALLGMVNSG---H---MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQ 451 (546)
Q Consensus 380 ~~~~n~~~iv~~Gav~~Lv~lL~~~---~---~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~ 451 (546)
...+....-.-.-.++.|.++|... + ++.+++.++..++ ..-||+.|.. ...+..+..+-.+....+....
T Consensus 504 ~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~-~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~ 582 (1075)
T KOG2171|consen 504 DAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA-RAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLR 582 (1075)
T ss_pred HHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH-HHhhhhhhhHhHHHHHHHHHhhcccchhhccccH
Confidence 7654443333335788888888753 3 3344444443333 3557788775 3466666655422222345677
Q ss_pred HHHHHHHHHHhc-CChhhHHHH
Q 009036 452 ESCVSVLYALSH-GGLRFKGLA 472 (546)
Q Consensus 452 e~Av~~L~~L~~-~~~~~~~~~ 472 (546)
++.+....++|. -.+.+....
T Consensus 583 sy~~~~warmc~ilg~~F~p~L 604 (1075)
T KOG2171|consen 583 SYMIAFWARMCRILGDDFAPFL 604 (1075)
T ss_pred HHHHHHHHHHHHHhchhhHhHH
Confidence 888888899997 233454443
No 55
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.50 E-value=6.8e-08 Score=70.47 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=40.0
Q ss_pred CceeCcccccccCCCeecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 44 GEFLCPVSGSLMADPVVVSSGHT-FERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
+++.|+||++-++|+++++|||. ||..|+.+|++ ....||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46789999999999999999999 99999999988 6668999987653
No 56
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.9e-06 Score=90.21 Aligned_cols=253 Identities=21% Similarity=0.206 Sum_probs=179.3
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHH-hhc-CCchHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccc-cchhhHH
Q 009036 273 ALRSLIIS-RYTNVQVNAVAALVN-LSL-EKINKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALD-DQNKTAI 347 (546)
Q Consensus 273 ~Lv~lL~s-~~~~v~~~A~~~L~n-Ls~-~~~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~-~~~k~~i 347 (546)
.|+.=|.. .|+..|-.|+.-|.. |+. +++.-..+.-..++|.|+.+|+.. +.++...|+++|.+|+.. +.....+
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 33333333 377777777766654 333 233333343456899999999976 899999999999999876 5566667
Q ss_pred hhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC--chHHHHHHHHHHHhhCC--cc
Q 009036 348 GVLGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS--GHMTGRVLLILGNLASC--SD 422 (546)
Q Consensus 348 ~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~--~e 422 (546)
.+.++||.|+.-|.. +-.++-+.++.+|-.|+..+ -..+.++|++...+.+|.- -..+..|+.+..|.|.. ++
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 788999999987765 56678899999999998743 3567899999999988864 44899999999999973 44
Q ss_pred cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc---CChhhHHHHHHCCcHHHHHHHHhcC----CHHHHHH
Q 009036 423 GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH---GGLRFKGLAAAAGMAEVLMRMERVG----SEHVKEK 495 (546)
Q Consensus 423 ~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~---~~~~~~~~~~~~g~v~~L~~ll~~~----s~~~k~~ 495 (546)
.-..++ .++|.|-.+|.. .+.+..|.++..+..++. +.+..-+.+...|.+.....|+... +..+...
T Consensus 329 ~f~~v~--ealPlL~~lLs~---~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 329 EFHFVM--EALPLLTPLLSY---QDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cchHHH--HHHHHHHHHHhh---ccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 444444 567888888877 356778888888888865 3444555566778888888886644 4455666
Q ss_pred HHHHHHHhhcCCccccccCChHHHHhcCCcccc-ccccCCCCC
Q 009036 496 AKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS-RFRLGYGRG 537 (546)
Q Consensus 496 A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 537 (546)
...+|..|+.... .-+.-+++-++...+ |..++|+-+
T Consensus 404 vIrmls~msS~~p-----l~~~tl~k~~I~~~L~~il~g~s~s 441 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSP-----LLFRTLLKLDIADTLKRILQGYSKS 441 (1051)
T ss_pred HHHHHHHHccCCh-----HHHHHHHHhhHHHHHHHHHhccCcC
Confidence 6677777776532 234445566666665 667887543
No 57
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.48 E-value=1.1e-07 Score=91.82 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=40.6
Q ss_pred CCCceeCcccccccCCC--------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 42 PPGEFLCPVSGSLMADP--------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dP--------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
...+..||||++.+.|| |+++|||+||+.||.+|++ ...+||.|+..+.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEee
Confidence 45678999999987764 5679999999999999987 4558999987654
No 58
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.44 E-value=1.1e-07 Score=91.16 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=60.9
Q ss_pred CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009036 41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQ 112 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~ 112 (546)
.+..-++|-||.+.++-|++++||||||.-||.+++. .+.-||.|+...++..++-+..++..++.+....
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r 91 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRGSSGSREINESHARNR 91 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhcccchhHHHHHHhhhhcc
Confidence 3456689999999999999999999999999999876 3446999999988888999998999988885443
No 59
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.9e-07 Score=83.87 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=43.0
Q ss_pred CceeCcccccccCC--CeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 009036 44 GEFLCPVSGSLMAD--PVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIP 97 (546)
Q Consensus 44 ~~~~CpI~~~~m~d--PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 97 (546)
.-|.||||++-++. ||.+.|||.||+.||.+.++ ...+||.|++.+....+.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK-NTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHH-hCCCCCCcccccchhhhee
Confidence 44899999999876 55689999999999998877 3448999998777766554
No 60
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.38 E-value=3.2e-07 Score=64.71 Aligned_cols=43 Identities=28% Similarity=0.454 Sum_probs=38.0
Q ss_pred eCcccccccCCCeecC-CCccccHHHHHHHHhcCCCCCCCCCCC
Q 009036 47 LCPVSGSLMADPVVVS-SGHTFERACAHVCKTLGFTPTLVDGTT 89 (546)
Q Consensus 47 ~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~ 89 (546)
.||||.+.+.+|+.+. |||.||..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999999999886 999999999999998767789998754
No 61
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.38 E-value=1.3e-07 Score=66.94 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=33.1
Q ss_pred eCcccccccC---CCeecCCCccccHHHHHHHHhcCCCCCCCCC
Q 009036 47 LCPVSGSLMA---DPVVVSSGHTFERACAHVCKTLGFTPTLVDG 87 (546)
Q Consensus 47 ~CpI~~~~m~---dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~ 87 (546)
.||||++-|. +++.++|||.|++.||.+|++.. ..||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 4999999994 56668999999999999999864 4898874
No 62
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.37 E-value=3.3e-07 Score=62.34 Aligned_cols=39 Identities=33% Similarity=0.596 Sum_probs=35.1
Q ss_pred CcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCC
Q 009036 48 CPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVD 86 (546)
Q Consensus 48 CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~ 86 (546)
||||++..++|++++|||.||..|+.+|++.+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998555678865
No 63
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.35 E-value=3.4e-05 Score=84.69 Aligned_cols=255 Identities=15% Similarity=0.171 Sum_probs=175.4
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
...++.+.+.|.++++.+|.+|+..+..+.+.+++.- ... .++.|..+|.+.++.++..|+.++..+...+.....
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~ 188 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKS 188 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTT
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhh
Confidence 3456778888899999999999999999998765432 222 689999999999999999999999988111111001
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR 385 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~ 385 (546)
+. ...+..|..++...++-.+...+.+|..++........- ...++.+..+|.+.++.+.-.++.++..+.....
T Consensus 189 ~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 189 LI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp HH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred hH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence 11 124555556667789999999999999887654332200 3467788888888888888899999998876554
Q ss_pred HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 386 TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 386 ~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
.-..+++.|+.++.+.+ ++..++..|..|+... ...+. .....+..+... .+..++..++.+|..++.
T Consensus 264 ---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~--~~~~~~~~l~~~--~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 264 ---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVF--NQSLILFFLLYD--DDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp ---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHG--THHHHHHHHHCS--SSHHHHHHHHHHHHHH--
T ss_pred ---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhh--hhhhhhheecCC--CChhHHHHHHHHHhhccc
Confidence 33457888999998654 7888999999988754 22233 223334455532 458889999999998885
Q ss_pred CChhhHHHHHHCCcHHHHHHHH-hcCCHHHHHHHHHHHHHhhcC
Q 009036 464 GGLRFKGLAAAAGMAEVLMRME-RVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 464 ~~~~~~~~~~~~g~v~~L~~ll-~~~s~~~k~~A~~lL~~L~~~ 506 (546)
.. .... +++.|...+ ...++..++.+...+..++..
T Consensus 334 ~~-n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~ 370 (526)
T PF01602_consen 334 ES-NVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEK 370 (526)
T ss_dssp HH-HHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred cc-chhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 32 1222 456667776 444777888888877777643
No 64
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.35 E-value=3.6e-05 Score=79.15 Aligned_cols=262 Identities=16% Similarity=0.163 Sum_probs=185.1
Q ss_pred CchhHHHHHHhcCCCCHHH--HHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC-C
Q 009036 225 SNEQEDYFVQKLKSPQVHE--VEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE-K 300 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~--~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~-~ 300 (546)
.++.++.|++++.+++.+. +.+|.+.|..+.- .+|+..++..| +..++.+-+ ...++.+...+.+|.+|.++ +
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 4677889999999888765 8889999988764 46788888766 445555444 34678888899999999997 5
Q ss_pred chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc--chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036 301 INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD--QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHL 378 (546)
Q Consensus 301 ~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L 378 (546)
+....+++.|+++.++-..+..++.+..+++.+|.|.+.+. +.+..|.+..+-+=|+.+-.+.+.-.+-.|+.+.+-|
T Consensus 255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence 67888899999999999999999999999999999988764 5677777777777777776666777888999999999
Q ss_pred hcCchhHHHHHhcCcHH---HHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036 379 SLVKSNRTKLVKLGSVN---ALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCV 455 (546)
Q Consensus 379 s~~~~n~~~iv~~Gav~---~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av 455 (546)
+.+.+.-..+-+.|.+. .|+..+.-+.....+-. ...|+ ..+-++.|+.+|.+. .....++
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd-------~aQG~----~~d~LqRLvPlLdS~-----R~EAq~i 398 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHD-------YAQGR----GPDDLQRLVPLLDSN-----RLEAQCI 398 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhh-------hhccC----ChHHHHHhhhhhhcc-----hhhhhhh
Confidence 88777655555555443 34433333332221110 01111 123678888888862 2233344
Q ss_pred HHHHHHhcC----C-hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 456 SVLYALSHG----G-LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 456 ~~L~~L~~~----~-~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
++.+ +|.. + .....++.+-|++..|-++..+.+.-...-|.++|+.+-+.
T Consensus 399 ~AF~-l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 399 GAFY-LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 4433 2321 1 12344677789999999999988888888899999988653
No 65
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.33 E-value=3.5e-05 Score=84.54 Aligned_cols=251 Identities=15% Similarity=0.148 Sum_probs=177.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLI 306 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i 306 (546)
.+..+.+.|.++++..+.-|++.|.++.. ++... -+++.+..++.++++.++..|+.++..+... ++.-
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~--- 149 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV--- 149 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---
Confidence 45677778899999999999999998883 22221 3578888999999999999999999988764 3321
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhc-ccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSL-ALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR 385 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~L-s~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~ 385 (546)
... .++.+..+|.+.++.++..|+.++..+ ...+..... ....+..|.+++...++-.+..++.+|..++......
T Consensus 150 ~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~--~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 150 EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSL--IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTH--HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhh--HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence 122 588899999999999999999999998 111111111 1234555556666778889889999999887744332
Q ss_pred HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 386 TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 386 ~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
..- ...++.+..++.+.. +.-.|+.++..+..... .-..+++.|+++|.+ .++..+..++..|..++.
T Consensus 227 ~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s---~~~nvr~~~L~~L~~l~~ 296 (526)
T PF01602_consen 227 ADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSS---SDPNVRYIALDSLSQLAQ 296 (526)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTS---SSHHHHHHHHHHHHHHCC
T ss_pred hhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhc---ccchhehhHHHHHHHhhc
Confidence 210 446777777777543 77788888888877655 334577899999986 468899999999999987
Q ss_pred CChhhHHHHHHCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhhcCC
Q 009036 464 GGLRFKGLAAAAGMAEVLMRMER-VGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 464 ~~~~~~~~~~~~g~v~~L~~ll~-~~s~~~k~~A~~lL~~L~~~~ 507 (546)
.. ...+. . ....+..+. +.+..+|..+..+|..++...
T Consensus 297 ~~---~~~v~--~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 297 SN---PPAVF--N-QSLILFFLLYDDDPSIRKKALDLLYKLANES 335 (526)
T ss_dssp HC---HHHHG--T-HHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred cc---chhhh--h-hhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence 54 12221 1 223333444 888999999999999998643
No 66
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.31 E-value=5.1e-06 Score=71.98 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=127.8
Q ss_pred hhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccH
Q 009036 348 GVLGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGR 424 (546)
Q Consensus 348 ~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r 424 (546)
...+.+..||.-.+. .+.+.++....-|.|.+.++.|=..+.+..++...++.|...+ +.+-+++.|+|||-.+.+.
T Consensus 13 ~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 13 DRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence 344567777777665 5889999988889999999999999999999999999998766 8899999999999999999
Q ss_pred HHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 425 VAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 425 ~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
..|+++++++.++..+.+ ........|+.+|..||.++...+.++...-++..+.+.-.+.+.+.+--|...|....
T Consensus 93 ~~I~ea~g~plii~~lss---p~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSS---PPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred HHHHHhcCCceEEeecCC---ChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 999999999999998887 45778889999999999987777888877777777777766666666666666665543
No 67
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.26 E-value=7.4e-05 Score=80.11 Aligned_cols=141 Identities=18% Similarity=0.160 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHH
Q 009036 363 DSERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVG 438 (546)
Q Consensus 363 ~~~~~~~~A~~aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~ 438 (546)
.+...+..|+.++.+++.. ..-+..+-+..++..|+.++.+++ +...++++|+||.. ...-+..++..|+|..|..
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 4667777777777777653 223334445578999999998876 78889999999985 5667999999999999999
Q ss_pred HHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCC-cHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 439 MLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAG-MAEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 439 lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g-~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
++.+ .+...+..++++|..+..+..+..+...-.. ....|..+..+.+..+++.+..+||+|.-.
T Consensus 469 ~~~~---~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 469 MLTD---PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhcC---CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 9998 4577889999999999876544333222222 245778889999999999999999999754
No 68
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.25 E-value=0.00044 Score=72.90 Aligned_cols=233 Identities=12% Similarity=0.077 Sum_probs=164.7
Q ss_pred ChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchHH-HHHhc-----CChHHHHHHHccCCHHHHHHHHHHHhhccccc
Q 009036 269 RLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINKM-LIVRS-----GLVPPIVDVLMAGSAEAQEHACGAIFSLALDD 341 (546)
Q Consensus 269 g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk~-~i~~~-----g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~ 341 (546)
..+..++.+|.. .+.++....+..+..|..+...+. .+.+. ....+++.+|...+.-+...|+.+|..|....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 467777787764 467777777777777776544433 33332 46778888998888899999999998886543
Q ss_pred chh-hHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc----hHHHHHHHHHH
Q 009036 342 QNK-TAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG----HMTGRVLLILG 415 (546)
Q Consensus 342 ~~k-~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~----~~~e~al~~L~ 415 (546)
... ......-.+.-|...|+.. +...+..|+.+|..|...++.|..+.+.++++.|+.+|... .+..+++-+++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 211 1000011223344455543 46677788899999999999999999999999999999752 37889999999
Q ss_pred HhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC------hhhHHHHHHCCcHHHHHHHHhcC-
Q 009036 416 NLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG------LRFKGLAAAAGMAEVLMRMERVG- 488 (546)
Q Consensus 416 nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~------~~~~~~~~~~g~v~~L~~ll~~~- 488 (546)
.|+-.+++...+.+.+.|+.|+++++.. .-+++..-++.+|.||...+ ......+.+.|+++.+-.|....
T Consensus 213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s--~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 213 LLTFNPHAAEVLKRLSLIQDLSDILKES--TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHhccHHHHHhhccccHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 9999888777777789999999999986 34678888999999998732 12344667777776665554443
Q ss_pred -CHHHHHHHHHHHHHh
Q 009036 489 -SEHVKEKAKRMLELM 503 (546)
Q Consensus 489 -s~~~k~~A~~lL~~L 503 (546)
++++.+--..+-..|
T Consensus 291 ~DedL~edl~~L~e~L 306 (429)
T cd00256 291 DDEDLTDDLKFLTEEL 306 (429)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 566655544444444
No 69
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.24 E-value=9.4e-06 Score=70.36 Aligned_cols=130 Identities=24% Similarity=0.269 Sum_probs=110.8
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh
Q 009036 271 LLALRSLI-ISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV 349 (546)
Q Consensus 271 i~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~ 349 (546)
+..|+.-. ...+.+.++....-|.|++.++.|-..+.+..+++..++.|...+..+++.+.+.|+|++.+..++..|.+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~e 97 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIRE 97 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHH
Confidence 34444433 34688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHH
Q 009036 350 LGALPPLLHLLKSDSERTQHDSALALYHLSLVK-SNRTKLVKLGSVNALLGM 400 (546)
Q Consensus 350 ~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~-~n~~~iv~~Gav~~Lv~l 400 (546)
.++++.++..+.+....+...|+.+|..|+... ..+..+....++..+.+.
T Consensus 98 a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 98 ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 999999999999988888899999999999854 456676665555554444
No 70
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00062 Score=70.03 Aligned_cols=272 Identities=17% Similarity=0.147 Sum_probs=191.5
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh---------hhhHHhhcCChHHHHHHHHccC------CHHHHHHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE---------ETRVSLCTPRLLLALRSLIISR------YTNVQVNAV 290 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~---------~~r~~l~~~g~i~~Lv~lL~s~------~~~v~~~A~ 290 (546)
-++++.++..|.+.+.++....+..|+.|+..+. .....+++.++++.|+.-+..= +.....+++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 4678899999999999999999999999987532 2345677788999998876532 233456677
Q ss_pred HHHHHhhc-CCchHHHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhcc----
Q 009036 291 AALVNLSL-EKINKMLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKS---- 362 (546)
Q Consensus 291 ~~L~nLs~-~~~nk~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~---- 362 (546)
.++.|+.. .+.....+++.|.+.-|+.-+... -...+.+|..+|.-+..+. +++...+...++..|++-+.-
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 88888876 466677777777666655544332 3456789999998877765 578888888888888876632
Q ss_pred C-----CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch-HHHHHHHHHHHhhCCccc---HHHHHhCCcH
Q 009036 363 D-----SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH-MTGRVLLILGNLASCSDG---RVAVLDSGGV 433 (546)
Q Consensus 363 ~-----~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~-~~e~al~~L~nLa~~~e~---r~~i~~~g~i 433 (546)
+ ..+...+...+|+.+...+.|+..++...++..+.-++..+. .+..++++|..+...+++ +..+++..++
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGL 363 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGL 363 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhH
Confidence 1 345667777888888889999999999988888877777655 677799999999887764 6667888888
Q ss_pred HHHHHHHccCCC-------CCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 434 ECLVGMLRKGTE-------LSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 434 ~~Lv~lL~~~~~-------~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
..+..+...... .-.+..|+.+.+|+.+-....... -...|.++..+..+++.+--.--|+...
T Consensus 364 rtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~~~~-------r~R~l~KF~End~EKvdRl~el~lky~~ 434 (536)
T KOG2734|consen 364 RTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLDGVH-------RQRLLRKFVENDFEKVDRLMELYLKYLI 434 (536)
T ss_pred HHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhccccH-------HHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 888877652110 124567889999998865321111 1234555566666666554444444443
No 71
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.23 E-value=0.00019 Score=75.70 Aligned_cols=211 Identities=15% Similarity=0.024 Sum_probs=146.6
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV 307 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~ 307 (546)
.++.++..|.+.+..++..+++.|..+ ...+..+.|+.+|.+.++.++..++.++...
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i-----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r----------- 144 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL-----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH----------- 144 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC-----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------
Confidence 377888888877777888887777543 2346788888888888888888777666641
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHH
Q 009036 308 RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTK 387 (546)
Q Consensus 308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~ 387 (546)
.....+.+..+|++.++.++..|+.+|..+ .....++.|...+.+.++.++..|+.+|..+-.
T Consensus 145 ~~~~~~~L~~~L~d~d~~Vra~A~raLG~l----------~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~------- 207 (410)
T TIGR02270 145 RHDPGPALEAALTHEDALVRAAALRALGEL----------PRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS------- 207 (410)
T ss_pred ccChHHHHHHHhcCCCHHHHHHHHHHHHhh----------ccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-------
Confidence 123467888888888999999999999887 334567778888888899999999888865522
Q ss_pred HHhcCcHHHHHHHHhC-chHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh
Q 009036 388 LVKLGSVNALLGMVNS-GHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL 466 (546)
Q Consensus 388 iv~~Gav~~Lv~lL~~-~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~ 466 (546)
..++..++.+... +..+...+.++..+... ..++..|..++.. +.++..++.+|..+-.
T Consensus 208 ---~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~---------~~a~~~L~~ll~d-----~~vr~~a~~AlG~lg~--- 267 (410)
T TIGR02270 208 ---RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG---------PDAQAWLRELLQA-----AATRREALRAVGLVGD--- 267 (410)
T ss_pred ---HhHHHHHHHHHhccCccHHHHHHHHHHhCCc---------hhHHHHHHHHhcC-----hhhHHHHHHHHHHcCC---
Confidence 1345566654433 33333333333333311 1466777788877 3478888888876643
Q ss_pred hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 467 RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 467 ~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
...++.|+..+.+. .+++.|.+.++.+++-+
T Consensus 268 --------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 268 --------VEAAPWCLEAMREP--PWARLAGEAFSLITGMD 298 (410)
T ss_pred --------cchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence 23678888887654 39999999999998743
No 72
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.21 E-value=0.00014 Score=78.04 Aligned_cols=161 Identities=18% Similarity=0.206 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHH
Q 009036 280 SRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLL 357 (546)
Q Consensus 280 s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv 357 (546)
..|......|+..+.+++.. ..-+..+....+..+|+.+|..++..++..+.++|.||... .+.|..+.+.|+|..|.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 45777777777777777653 22222244567899999999999999999999999999886 46799999999999999
Q ss_pred HhhccCCHHHHHHHHHHHHHhhcCchhHHH--HHhcCcHHHHHHHHhCch--HHHHHHHHHHHhh-CCcccHHHHHhC--
Q 009036 358 HLLKSDSERTQHDSALALYHLSLVKSNRTK--LVKLGSVNALLGMVNSGH--MTGRVLLILGNLA-SCSDGRVAVLDS-- 430 (546)
Q Consensus 358 ~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~--iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa-~~~e~r~~i~~~-- 430 (546)
.++.+.+..++..++|+|+++....++..+ ..+.=....++.++.+++ ++|.|+.+|.||. .+.+..+.+++.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~ 547 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK 547 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence 999999999999999999999986554333 233333445666777766 9999999999996 455666666652
Q ss_pred CcHHHHHHHH
Q 009036 431 GGVECLVGML 440 (546)
Q Consensus 431 g~i~~Lv~lL 440 (546)
..+..+...+
T Consensus 548 ~~ld~i~l~l 557 (678)
T KOG1293|consen 548 DVLDKIDLQL 557 (678)
T ss_pred HHHHHHHHHH
Confidence 2444444444
No 73
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.2e-06 Score=84.96 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=45.9
Q ss_pred CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 009036 41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTV 95 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l 95 (546)
..+..+.|-||++-++||--+||||-||=+||..|..... -||.|+....+..+
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-CCCcccccCCCcce
Confidence 4457799999999999999999999999999999987433 49999988776554
No 74
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.19 E-value=2.2e-06 Score=85.20 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=41.1
Q ss_pred CceeCcccccc-cCCCe----ecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 009036 44 GEFLCPVSGSL-MADPV----VVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVI 96 (546)
Q Consensus 44 ~~~~CpI~~~~-m~dPV----~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~ 96 (546)
++..||+|+.- +..|= +.+|||+||++||.+.|..+..+||.|+.++....+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 45689999983 34452 2379999999999998777778999999888766643
No 75
>PHA02926 zinc finger-like protein; Provisional
Probab=98.11 E-value=1.8e-06 Score=80.66 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=42.9
Q ss_pred CCCCceeCcccccccCC---------CeecCCCccccHHHHHHHHhcC-----CCCCCCCCCCCCCCCCccc
Q 009036 41 EPPGEFLCPVSGSLMAD---------PVVVSSGHTFERACAHVCKTLG-----FTPTLVDGTTPDFSTVIPN 98 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~d---------PV~~~~G~ty~r~~i~~~~~~~-----~~~cp~~~~~~~~~~l~pn 98 (546)
....+..|+||++...+ +|+.+|+|+||..||.+|.+.. ...||.|+..+. .++|+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 34567889999998754 4777999999999999998742 236999988653 44554
No 76
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00015 Score=78.95 Aligned_cols=213 Identities=15% Similarity=0.167 Sum_probs=164.7
Q ss_pred HHHHHHHHc-cCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccc-----
Q 009036 271 LLALRSLII-SRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQ----- 342 (546)
Q Consensus 271 i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~----- 342 (546)
|+.|+.-+. +.-.+-+..|+..|..++.. .|.. +...++++|+.+|+.. ++++..+++.++.++...++
T Consensus 24 I~kLcDRvessTL~eDRR~A~rgLKa~srk--YR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~ 100 (970)
T KOG0946|consen 24 IEKLCDRVESSTLLEDRRDAVRGLKAFSRK--YREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVM 100 (970)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHH--HHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhc
Confidence 344444333 23455677888888877642 3333 3356899999999976 89999999999999876552
Q ss_pred --hh----------h-HHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC--chhHHHHHhc-CcHHHHHHHHhCch-
Q 009036 343 --NK----------T-AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV--KSNRTKLVKL-GSVNALLGMVNSGH- 405 (546)
Q Consensus 343 --~k----------~-~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~--~~n~~~iv~~-Gav~~Lv~lL~~~~- 405 (546)
.+ + .|...+.|..|+..+...+-.+|..++..|.+|-.. .+.+..+... -+|..|+.+|.+..
T Consensus 101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE 180 (970)
T KOG0946|consen 101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE 180 (970)
T ss_pred ccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh
Confidence 12 1 222367888999999988999999999999998764 4566666666 89999999998754
Q ss_pred -HHHHHHHHHHHhhCCcccHHHHHh-CCcHHHHHHHHccCC-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHH
Q 009036 406 -MTGRVLLILGNLASCSDGRVAVLD-SGGVECLVGMLRKGT-ELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLM 482 (546)
Q Consensus 406 -~~e~al~~L~nLa~~~e~r~~i~~-~g~i~~Lv~lL~~~~-~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~ 482 (546)
++..++-.|..|.........++. .++...|+.++.... .+.--+.+-|+..|.+|-..+...+..+++.+-++.|.
T Consensus 181 ~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~ 260 (970)
T KOG0946|consen 181 PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLL 260 (970)
T ss_pred hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHH
Confidence 888999999999998888888887 789999999998743 22335789999999999998888999999999999998
Q ss_pred HHHh
Q 009036 483 RMER 486 (546)
Q Consensus 483 ~ll~ 486 (546)
.++.
T Consensus 261 klL~ 264 (970)
T KOG0946|consen 261 KLLS 264 (970)
T ss_pred hhcC
Confidence 6644
No 77
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=7.5e-07 Score=88.23 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=56.6
Q ss_pred CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCC-CCCCcccHHHHHHHHHH
Q 009036 41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPD-FSTVIPNLALKSTILNW 108 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~-~~~l~pn~~l~~~i~~~ 108 (546)
.+..+|.||||+.+++--.++ .|+|.||+.||-+-+..++..||.|++.+. ...|.++-..-.+|.+.
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 456789999999999999988 899999999999989999999999998764 45677666666666554
No 78
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.9e-06 Score=94.07 Aligned_cols=72 Identities=29% Similarity=0.392 Sum_probs=63.6
Q ss_pred CCCCCceeCcccccccCCCeecC-CCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVS-SGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQ 112 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~ 112 (546)
.++|++|..||...+|+|||++| +|+|.||+-|++++-. .++-|.|+.++....+.||..|+.-|+.|...+
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 36999999999999999999998 9999999999998652 335567899999999999999999999996654
No 79
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.07 E-value=2.9e-06 Score=59.99 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=34.5
Q ss_pred eCccccccc---CCCeecCCCccccHHHHHHHHhcCCCCCCCCCC
Q 009036 47 LCPVSGSLM---ADPVVVSSGHTFERACAHVCKTLGFTPTLVDGT 88 (546)
Q Consensus 47 ~CpI~~~~m---~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~ 88 (546)
.||||.+.+ +.|++++|||+||..||.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 399999999 468889999999999999987 44558999864
No 80
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.06 E-value=0.00061 Score=71.10 Aligned_cols=256 Identities=13% Similarity=0.100 Sum_probs=179.8
Q ss_pred HHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC--CHHH
Q 009036 249 ISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG--SAEA 326 (546)
Q Consensus 249 ~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~--~~~~ 326 (546)
..|..+.+..+..|..+.-.-..+.+..++-+++.+++..+..++..+..++..-..+.+.+.--.++.-|... ...-
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~E 84 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVE 84 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHH
Confidence 34455555556555555544556666656656669999999999999999998888888888777777877754 5677
Q ss_pred HHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch-
Q 009036 327 QEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH- 405 (546)
Q Consensus 327 ~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~- 405 (546)
|++|...+..+......... .-.|.+..|+.+..+.+...+..|+.+|+.|+..+ -..++..|++..|++.+.++.
T Consensus 85 R~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 85 REQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccH
Confidence 88999999888665433222 23578889999998888999999999999998753 234567799999999998754
Q ss_pred -HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccC----CCCCH--HHHHHHHHHHHHHhcCChhhHHHHHHC-Cc
Q 009036 406 -MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG----TELSE--STQESCVSVLYALSHGGLRFKGLAAAA-GM 477 (546)
Q Consensus 406 -~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~----~~~s~--~~~e~Av~~L~~L~~~~~~~~~~~~~~-g~ 477 (546)
..+.++.++..+-..+..|..+...--+..++.-+.+. ...+. +.-..+..++..+-+.=.+.-...... .+
T Consensus 162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~ 241 (371)
T PF14664_consen 162 SISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRG 241 (371)
T ss_pred hHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchH
Confidence 77889999999999999998887544445554444332 11122 122334444444433211222222222 46
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 478 AEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 478 v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
++.|+..+..+++++|+....+|-.+-+-.
T Consensus 242 lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 242 LKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 888999999999999999999998887654
No 81
>PTZ00429 beta-adaptin; Provisional
Probab=98.05 E-value=0.00094 Score=75.48 Aligned_cols=252 Identities=12% Similarity=0.078 Sum_probs=171.5
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV 307 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~ 307 (546)
.+.+|-+.|.+.+...+.++++.|-.+...+... ..+.+-+++++.++|.+++.-....|.+.+........+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL- 105 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL- 105 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-
Confidence 4567888888888888888888776544333222 124666777888999999998888888877632221111
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHH
Q 009036 308 RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTK 387 (546)
Q Consensus 308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~ 387 (546)
.+..|..=+.+.++.+|..|+++|.++-... +. .-.+..+.+.|.+.++.+|+.|+.++..|-.... ..
T Consensus 106 ---aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--el 174 (746)
T PTZ00429 106 ---AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VL-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QL 174 (746)
T ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--cc
Confidence 3566777778889999999999999874311 11 1245667778888899999999999999865332 23
Q ss_pred HHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC
Q 009036 388 LVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG 465 (546)
Q Consensus 388 iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~ 465 (546)
+.+.|.++.|.++|.+.+ +...|+.+|..++.....+- -...+.+..|+..|.. .++..+-..+.+|......+
T Consensus 175 v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e---~~EW~Qi~IL~lL~~y~P~~ 250 (746)
T PTZ00429 175 FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPE---CNEWGQLYILELLAAQRPSD 250 (746)
T ss_pred ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhc---CChHHHHHHHHHHHhcCCCC
Confidence 345688999999998765 89999999999986433221 1234556677777766 34777777777764433222
Q ss_pred hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 466 LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 466 ~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
. ..+. .++..+...+++.|+.+.-.|..++-.+...
T Consensus 251 ~---~e~~--~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 251 K---ESAE--TLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred c---HHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 1 1111 2556677777788888877777777666543
No 82
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3.1e-06 Score=87.65 Aligned_cols=73 Identities=22% Similarity=0.200 Sum_probs=59.5
Q ss_pred CCCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC-----CCCcccHHHHHHHHHHHHHc
Q 009036 39 TAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF-----STVIPNLALKSTILNWCHKQ 112 (546)
Q Consensus 39 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-----~~l~pn~~l~~~i~~~~~~~ 112 (546)
+..++.+|.|-||..++.+||+++|||+||..||.+.++ ...+||.|+..+.. ....+|+.+.++|..|+..-
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345689999999999999999999999999999999666 56689999877653 12346778889998887654
No 83
>PF05536 Neurochondrin: Neurochondrin
Probab=97.98 E-value=0.00033 Score=76.81 Aligned_cols=211 Identities=18% Similarity=0.117 Sum_probs=148.7
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHhhcccccc----hhhHHhhcCChHHHHHhhccC-------CHHHHHHHHHHHHHhh
Q 009036 311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ----NKTAIGVLGALPPLLHLLKSD-------SERTQHDSALALYHLS 379 (546)
Q Consensus 311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~l~~Lv~lL~~~-------~~~~~~~A~~aL~~Ls 379 (546)
.++..+.+|+..+++-|-.++..+..+...++ .+..|.+.=+.+-|-++|+.+ ....+..|+.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 35667788888887777777777788876543 244566655578888898872 3456677888999999
Q ss_pred cCchhH--HHHHhcCcHHHHHHHHhCc---hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHH
Q 009036 380 LVKSNR--TKLVKLGSVNALLGMVNSG---HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESC 454 (546)
Q Consensus 380 ~~~~n~--~~iv~~Gav~~Lv~lL~~~---~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~A 454 (546)
..++.. .+|+. -||.|++++... .+...|+.+|..++..++|+.++++.|+++.|+.++.+. ....+.|
T Consensus 86 ~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~----~~~~E~A 159 (543)
T PF05536_consen 86 RDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ----SFQMEIA 159 (543)
T ss_pred CChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC----cchHHHH
Confidence 976653 55554 599999999764 378999999999999999999999999999999999883 5678999
Q ss_pred HHHHHHHhcCCh-----hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcc---c-cccCChHHHHhcCCc
Q 009036 455 VSVLYALSHGGL-----RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE---E-EEGVDWDELLDSGLV 525 (546)
Q Consensus 455 v~~L~~L~~~~~-----~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~---~-~~~~~~~~~~~~~~~ 525 (546)
+.+|.+++.... +....+. .++..|-..........|-.+..+|..+-...+. . -....|-.=+-.|+-
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~--~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~ 237 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLH--SILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLR 237 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHH--HHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHH
Confidence 999999987432 1111111 2445555555555555566666666666554431 1 145578666655655
Q ss_pred cccc
Q 009036 526 SRSR 529 (546)
Q Consensus 526 ~~~~ 529 (546)
.-.+
T Consensus 238 ~iL~ 241 (543)
T PF05536_consen 238 DILQ 241 (543)
T ss_pred HHHh
Confidence 5444
No 84
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0002 Score=76.74 Aligned_cols=284 Identities=14% Similarity=0.113 Sum_probs=181.8
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh-c---CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLC-T---PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKI 301 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~-~---~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~ 301 (546)
...++.|...|.+.+...++-|..+|..++.++.+.-..=+ . .-.||.++.+.+++++.++..|+.++-.......
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 36688999999999989999999999999987653222111 1 2368889999999999999999988876544322
Q ss_pred hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036 302 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 302 nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 381 (546)
-.-...-..+++.|..+-...++++|.+.+++|..|......|-.-.-.+.++-++..-++.+.++--+|+.....++..
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 11111123466667776667799999999999999876654443323356778888888888888989999999999887
Q ss_pred chhHHHHHhc--CcHHHHHHHHhCch--------------------------HHHH--HH-------------------H
Q 009036 382 KSNRTKLVKL--GSVNALLGMVNSGH--------------------------MTGR--VL-------------------L 412 (546)
Q Consensus 382 ~~n~~~iv~~--Gav~~Lv~lL~~~~--------------------------~~e~--al-------------------~ 412 (546)
+-.+..+... ..||.|+.-+.-.+ .+.+ .. .
T Consensus 287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~ 366 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF 366 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence 7444444333 67777765221000 0000 00 0
Q ss_pred HHHHhhCCcccHHH----HHhCCcHHHHHHHHccCC-CCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHCCcHHHHHHHHh
Q 009036 413 ILGNLASCSDGRVA----VLDSGGVECLVGMLRKGT-ELSESTQESCVSVLYALSHGGL-RFKGLAAAAGMAEVLMRMER 486 (546)
Q Consensus 413 ~L~nLa~~~e~r~~----i~~~g~i~~Lv~lL~~~~-~~s~~~~e~Av~~L~~L~~~~~-~~~~~~~~~g~v~~L~~ll~ 486 (546)
.=+||=.|....-. +.....++.++-+|+..- ...=.++|.++-+|..++.+.- ..-...- ..++.|+.++.
T Consensus 367 ~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--eLip~l~~~L~ 444 (885)
T KOG2023|consen 367 SDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP--ELIPFLLSLLD 444 (885)
T ss_pred ccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH--HHHHHHHHHhc
Confidence 00222222211111 223345566666655421 1234588999999998886421 1111111 26789999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCcccc
Q 009036 487 VGSEHVKEKAKRMLELMKGRAEEEE 511 (546)
Q Consensus 487 ~~s~~~k~~A~~lL~~L~~~~~~~~ 511 (546)
+..+-+|....+.|...+..--.+.
T Consensus 445 DKkplVRsITCWTLsRys~wv~~~~ 469 (885)
T KOG2023|consen 445 DKKPLVRSITCWTLSRYSKWVVQDS 469 (885)
T ss_pred cCccceeeeeeeeHhhhhhhHhcCC
Confidence 9999999999998888876544444
No 85
>PF05536 Neurochondrin: Neurochondrin
Probab=97.92 E-value=0.00068 Score=74.36 Aligned_cols=231 Identities=17% Similarity=0.145 Sum_probs=159.1
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh---hhHHhhcCChHHHHHHHHcc-------CCHHHHHHHHHHHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREE---TRVSLCTPRLLLALRSLIIS-------RYTNVQVNAVAALVN 295 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~---~r~~l~~~g~i~~Lv~lL~s-------~~~~v~~~A~~~L~n 295 (546)
...+++.++.|++.+.+.+-.++-.+.++.+.++. .++.+.++=+..+|-.+|.+ +....+.-|+.+|..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999977888899999999987763 34567777778999999986 335667888999999
Q ss_pred hhcCCchH--HHHHhcCChHHHHHHHccCCH-HHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHH
Q 009036 296 LSLEKINK--MLIVRSGLVPPIVDVLMAGSA-EAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSA 372 (546)
Q Consensus 296 Ls~~~~nk--~~i~~~g~l~~Lv~lL~~~~~-~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~ 372 (546)
++.+++.. ..++ +.||.|++++.+.+. ++...+..+|..++..++.+..+.+.|+++.|++.+.+ .+.....|+
T Consensus 84 f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 84 FCRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred HcCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 99876543 3333 469999999988866 99999999999999999999999999999999999988 456678899
Q ss_pred HHHHHhhcCchhHHHHHhc-----CcHHHHHHHHhC--chHHHHHHHHHHHhhCCccc--HHHHHhCCc----HHHHHHH
Q 009036 373 LALYHLSLVKSNRTKLVKL-----GSVNALLGMVNS--GHMTGRVLLILGNLASCSDG--RVAVLDSGG----VECLVGM 439 (546)
Q Consensus 373 ~aL~~Ls~~~~n~~~iv~~-----Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e~--r~~i~~~g~----i~~Lv~l 439 (546)
.+|.+++...... .+-+. ..+..|...+.. +..+-..+..|.++-...+. ......... ...|..+
T Consensus 161 ~lL~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 161 NLLLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 9999987643311 11011 233444444432 22455567777776544321 111122233 3344455
Q ss_pred HccCCCCCHHHHHHHHHHHHHHh
Q 009036 440 LRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 440 L~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
|.+. ..+..+..|+.....|.
T Consensus 240 L~sr--~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 240 LQSR--LTPSQRDPALNLAASLL 260 (543)
T ss_pred HhcC--CCHHHHHHHHHHHHHHH
Confidence 5553 34566666655555553
No 86
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0005 Score=67.83 Aligned_cols=234 Identities=16% Similarity=0.124 Sum_probs=154.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh
Q 009036 271 LLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV-RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV 349 (546)
Q Consensus 271 i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~-~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~ 349 (546)
+.-|+.+|.+.++.++..|+..+..+... ..+.... +...++.|.+++....+ -+.|+.+|.|++.....+..+.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 44578899999999999999999888766 3332222 23467888888887655 66889999999999888777766
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhc------CcHHHHHHHHhCch-----HHHHHHHHHHHhh
Q 009036 350 LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKL------GSVNALLGMVNSGH-----MTGRVLLILGNLA 418 (546)
Q Consensus 350 ~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~------Gav~~Lv~lL~~~~-----~~e~al~~L~nLa 418 (546)
. .++.++.++.+.....-..++.+|.||+..+.....+... ..+..|+..+.+++ --.+..-++.||+
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 6 8888888888764445577888999999876543333221 23344444444332 3456788999999
Q ss_pred CCcccHHHHHhCCcH--HHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-HCCcHHHHHHHHh---------
Q 009036 419 SCSDGRVAVLDSGGV--ECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAA-AAGMAEVLMRMER--------- 486 (546)
Q Consensus 419 ~~~e~r~~i~~~g~i--~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~-~~g~v~~L~~ll~--------- 486 (546)
..+.||..+.+...+ +.++.+ .. .++..-+...+++|.|.|.+..-...++. +...++.|+.-+.
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~f-t~--~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEd 237 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPF-TS--EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEED 237 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcc-cc--cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence 999999999876522 222221 22 13455667888999998886543333332 1223333322111
Q ss_pred -----------------cCCHHHHHHHHHHHHHhhcCCcccc
Q 009036 487 -----------------VGSEHVKEKAKRMLELMKGRAEEEE 511 (546)
Q Consensus 487 -----------------~~s~~~k~~A~~lL~~L~~~~~~~~ 511 (546)
..++.++.+-.++|-+|+....+.+
T Consensus 238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe 279 (353)
T KOG2973|consen 238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGRE 279 (353)
T ss_pred HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHH
Confidence 1267888888888888877665544
No 87
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.00013 Score=76.47 Aligned_cols=261 Identities=15% Similarity=0.162 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCch-HHHHHhcCChHHHHHHHccC
Q 009036 244 VEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKIN-KMLIVRSGLVPPIVDVLMAG 322 (546)
Q Consensus 244 ~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~n-k~~i~~~g~l~~Lv~lL~~~ 322 (546)
-..++..|..+++.-...|.-+..+.+.++|+.+|..++..+...+...+.|+.....| +..+.+.|++..|+.++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 33456667778887777888999999999999999988887777888889988876544 77778999999999999999
Q ss_pred CHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-Cchh---HHHHHhcC----
Q 009036 323 SAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-VKSN---RTKLVKLG---- 392 (546)
Q Consensus 323 ~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~~n---~~~iv~~G---- 392 (546)
+..+|.+..++|..+...... |-.....-++..++.+..++.-.++...+..|.|+.- ...| +.-.+..-
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 999999999999999887644 4344556688999999998888899999999999854 2222 11111111
Q ss_pred cHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCC---------C--------------
Q 009036 393 SVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGT---------E-------------- 445 (546)
Q Consensus 393 av~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~---------~-------------- 445 (546)
..+.|++.+...+ ..+..+.+|.+++.+.++...++. ...+..+..+|.... .
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 3344455544433 455568888888888887777663 455555555543210 0
Q ss_pred ---------------------------CCHHHHHHHHHHHHHHhc---CC------hhhHHHHHHCCcHHHHHHHHhcCC
Q 009036 446 ---------------------------LSESTQESCVSVLYALSH---GG------LRFKGLAAAAGMAEVLMRMERVGS 489 (546)
Q Consensus 446 ---------------------------~s~~~~e~Av~~L~~L~~---~~------~~~~~~~~~~g~v~~L~~ll~~~s 489 (546)
.+.+.....+++..++.- +. .++.++....|.-+.|..+....+
T Consensus 646 l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S 725 (743)
T COG5369 646 LSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS 725 (743)
T ss_pred ccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence 011121222222222211 11 145556667787788888888889
Q ss_pred HHHHHHHHHHHHHhh
Q 009036 490 EHVKEKAKRMLELMK 504 (546)
Q Consensus 490 ~~~k~~A~~lL~~L~ 504 (546)
+.+|+++..+|.+|.
T Consensus 726 l~vrek~~taL~~l~ 740 (743)
T COG5369 726 LIVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999998875
No 88
>PTZ00429 beta-adaptin; Provisional
Probab=97.89 E-value=0.0032 Score=71.26 Aligned_cols=183 Identities=14% Similarity=0.033 Sum_probs=121.1
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
..+..+.+.|.+.++-+|..|+-.+.++.+.+++ .+.+.|+++.|..+|.+.|+.++.+|+.+|..+.........
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~- 215 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE- 215 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-
Confidence 4456677788899999999999999998876552 344678999999999999999999999999998764322222
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc--hh
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK--SN 384 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~--~n 384 (546)
...+.+..|+..|...++-.+...+.+|....-.+ ... ....+..+...|++.++.+.-.|+.++.++.... +.
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~-~~e---~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~ 291 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD-KES---AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQEL 291 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC-cHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHH
Confidence 22345667777777767667766666664422111 111 1246777888888889999999999999887642 11
Q ss_pred HHHHHhcCcHHHHHHHHhC-chHHHHHHHHHHHhh
Q 009036 385 RTKLVKLGSVNALLGMVNS-GHMTGRVLLILGNLA 418 (546)
Q Consensus 385 ~~~iv~~Gav~~Lv~lL~~-~~~~e~al~~L~nLa 418 (546)
...+. ......|+.++.. .+++.-++..|..|.
T Consensus 292 ~~~~~-~rl~~pLv~L~ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 292 IERCT-VRVNTALLTLSRRDAETQYIVCKNIHALL 325 (746)
T ss_pred HHHHH-HHHHHHHHHhhCCCccHHHHHHHHHHHHH
Confidence 11111 1123455555543 235555555554443
No 89
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=7.1e-06 Score=85.47 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=47.8
Q ss_pred CceeCcccccccCCCeecCCCccccHHHHHHHHhc----CCCCCCCCCCCCCCCCCcccH
Q 009036 44 GEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL----GFTPTLVDGTTPDFSTVIPNL 99 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~----~~~~cp~~~~~~~~~~l~pn~ 99 (546)
.+..||||++-..=|+.+.|||.||=.||.++|.. +.+.||.|+..+...+|.|-+
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 37899999999999999999999999999996653 455899999888877777754
No 90
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0018 Score=73.88 Aligned_cols=259 Identities=17% Similarity=0.123 Sum_probs=162.4
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhhHHhhc--CChHHHHHHHHcc--CC--------------HHHHHHHHHHHHHhhcC
Q 009036 238 SPQVHEVEEALISLRKLTRSREETRVSLCT--PRLLLALRSLIIS--RY--------------TNVQVNAVAALVNLSLE 299 (546)
Q Consensus 238 s~~~~~~~~Al~~L~~La~~~~~~r~~l~~--~g~i~~Lv~lL~s--~~--------------~~v~~~A~~~L~nLs~~ 299 (546)
.-+...|..|+..|..+++.-+..++.... .-+++.++.++.. .| ......|..+|-.++.+
T Consensus 260 ~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~ 339 (1075)
T KOG2171|consen 260 ELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALH 339 (1075)
T ss_pred cccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhc
Confidence 335677888999998888775444443333 2245555555432 11 01234466667666665
Q ss_pred CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036 300 KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHL 378 (546)
Q Consensus 300 ~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L 378 (546)
=..+..+ .-.++.+-.+|++.+..-|..|+.+|..++.... +..++. ...++.++..|.+.++++|-.|+.+|..+
T Consensus 340 L~g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~ 416 (1075)
T KOG2171|consen 340 LGGKQVL--PPLFEALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQM 416 (1075)
T ss_pred CChhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 3322211 1245666677889999999888888888765421 222233 45777888889999999999999999999
Q ss_pred hcC-chhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHHH
Q 009036 379 SLV-KSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQE 452 (546)
Q Consensus 379 s~~-~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~e 452 (546)
+.+ ...-.+-...-+++.|+..+.+.. ++..|+.+|.|+...-.+ ..+.. .+.+..++..|... ..+.++|
T Consensus 417 stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~--~~~~v~e 493 (1075)
T KOG2171|consen 417 STDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQS--SKPYVQE 493 (1075)
T ss_pred hhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcC--CchhHHH
Confidence 873 333344444457888999988743 778888888887753221 11211 34445455555553 4689999
Q ss_pred HHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCC----HHHHHHHHHHHHHhh
Q 009036 453 SCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGS----EHVKEKAKRMLELMK 504 (546)
Q Consensus 453 ~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s----~~~k~~A~~lL~~L~ 504 (546)
.++.+|..++.. ...+...... .++.|..++++.+ ...|.+..+.+..+.
T Consensus 494 ~vvtaIasvA~AA~~~F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 494 QAVTAIASVADAAQEKFIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 999999999863 2244444433 6788888888775 223444444444443
No 91
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.76 E-value=1.6e-05 Score=83.38 Aligned_cols=67 Identities=24% Similarity=0.377 Sum_probs=55.2
Q ss_pred CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHH
Q 009036 41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIP-NLALKSTILNW 108 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p-n~~l~~~i~~~ 108 (546)
.+.+++.||||..+++||+.+ .|||.||+.||..|... +..||.|+.........| -..+++.+..|
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 367889999999999999995 99999999999999987 667888877766555555 45577887777
No 92
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=2.4e-05 Score=74.98 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=43.7
Q ss_pred CCceeCcccccccCCCeecCCCccccHHHHHH-HHhcCCCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHV-CKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~-~~~~~~~~cp~~~~~~~~ 92 (546)
-.+|.|+||++.+.+|+-++|||.||-.||-. |-.+...-||.|+....+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 47999999999999999999999999999988 877666679999876544
No 93
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.70 E-value=5e-05 Score=73.46 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=54.0
Q ss_pred eeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCC-CCCCCCcccHHHHHHHHHHHHHc
Q 009036 46 FLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTT-PDFSTVIPNLALKSTILNWCHKQ 112 (546)
Q Consensus 46 ~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~-~~~~~l~pn~~l~~~i~~~~~~~ 112 (546)
+.||+|..|++.|+-+ +|||+||..||+.-+-....-||.|... +--..|.|+.-.+.-|+.+...+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 8999999999999999 8899999999998665444568777542 22347899999888888887644
No 94
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.68 E-value=7.4e-05 Score=51.86 Aligned_cols=40 Identities=28% Similarity=0.223 Sum_probs=37.8
Q ss_pred ChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 009036 258 REETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLS 297 (546)
Q Consensus 258 ~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs 297 (546)
+++++..+++.|+||.|+.+|.+.+.++++.|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999986
No 95
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.67 E-value=0.018 Score=60.23 Aligned_cols=269 Identities=16% Similarity=0.099 Sum_probs=178.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 229 EDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR--YTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 229 i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
.+.+...+-+.+.+++..+.+.+|.+... ...-..+.+.++--.++..|..+ +..-++.|+..+..+.....+...
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~- 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE- 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-
Confidence 34455444455588899999999888775 45556666666655666666543 455677898888776654333222
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT 386 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~ 386 (546)
.-.|++..|+.+..+.++..+..+..+|..++..+. +.+...|++..|++.+.++..+.....+.++.++...+..|.
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 234788999999999999999999999999987543 345678999999999988766777778889999988888887
Q ss_pred HHHhcCcHHHHHHHHhCc-----------hHHHHHHHHHHHhhCCcccHHHHHhC--CcHHHHHHHHccCCCCCHHHHHH
Q 009036 387 KLVKLGSVNALLGMVNSG-----------HMTGRVLLILGNLASCSDGRVAVLDS--GGVECLVGMLRKGTELSESTQES 453 (546)
Q Consensus 387 ~iv~~Gav~~Lv~lL~~~-----------~~~e~al~~L~nLa~~~e~r~~i~~~--g~i~~Lv~lL~~~~~~s~~~~e~ 453 (546)
.+...--+..++.-+.+. +.-..+..++..+-+.=.|--.+... .++..|+..|.. .++++++.
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~---p~~~ir~~ 259 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL---PNPEIRKA 259 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC---CCHHHHHH
Confidence 666544455555554432 11122333443333333343333322 366777777766 34566666
Q ss_pred HHHHHHHHhcC-----------------Chh-----------------------------------hHHHHHHCCcHHHH
Q 009036 454 CVSVLYALSHG-----------------GLR-----------------------------------FKGLAAAAGMAEVL 481 (546)
Q Consensus 454 Av~~L~~L~~~-----------------~~~-----------------------------------~~~~~~~~g~v~~L 481 (546)
.+.+|..+-.- ... .-.++.+.|.++.|
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L 339 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL 339 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence 66666655210 000 01235688999999
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHhh
Q 009036 482 MRMERVG-SEHVKEKAKRMLELMK 504 (546)
Q Consensus 482 ~~ll~~~-s~~~k~~A~~lL~~L~ 504 (546)
+++..+. ++.+..+|.-+|..+-
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHH
Confidence 9998877 8899999999887664
No 96
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.63 E-value=0.003 Score=67.83 Aligned_cols=259 Identities=17% Similarity=0.139 Sum_probs=167.8
Q ss_pred HHHHHHHhccChhhhHHhhcCChHHHHHHHH----------ccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHH
Q 009036 248 LISLRKLTRSREETRVSLCTPRLLLALRSLI----------ISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIV 316 (546)
Q Consensus 248 l~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL----------~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv 316 (546)
+..|+.++++ ..+-..+....++..|..+- ...+..+..+|+.+|.|+... +..|..+++.|+.+.++
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4556666664 34555555555666666654 245788999999999998775 77888888999999999
Q ss_pred HHHccC-----CHHHHHHHHHHHhhccccc-chhhHHh-hcCChHHHHHhhcc-----------------CCHHHHHHHH
Q 009036 317 DVLMAG-----SAEAQEHACGAIFSLALDD-QNKTAIG-VLGALPPLLHLLKS-----------------DSERTQHDSA 372 (546)
Q Consensus 317 ~lL~~~-----~~~~~~~Aa~~L~~Ls~~~-~~k~~i~-~~g~l~~Lv~lL~~-----------------~~~~~~~~A~ 372 (546)
..|+.. +.++.....++|+-++... +.+..+. +.+++..|+..|.. .+..+..+++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999976 7899999999999888654 4554444 45777777766542 0234567888
Q ss_pred HHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc-----------hHHHHHHHHHHHhhCC-ccc-------HHHH----Hh
Q 009036 373 LALYHLSLVKSNRTKLVKLGSVNALLGMVNSG-----------HMTGRVLLILGNLASC-SDG-------RVAV----LD 429 (546)
Q Consensus 373 ~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~-----------~~~e~al~~L~nLa~~-~e~-------r~~i----~~ 429 (546)
++|+|+.........--..+.++.|+.+|..- .....++.+|.|+-.. .+. ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 99999976433222112224555555554321 1556677777776321 111 1111 11
Q ss_pred CCcHHHHHHHHccCCC--C---CHHHHHHHHHHHHHHhcCChhhHHHHHH----------------CCcHHHHHHHHhcC
Q 009036 430 SGGVECLVGMLRKGTE--L---SESTQESCVSVLYALSHGGLRFKGLAAA----------------AGMAEVLMRMERVG 488 (546)
Q Consensus 430 ~g~i~~Lv~lL~~~~~--~---s~~~~e~Av~~L~~L~~~~~~~~~~~~~----------------~g~v~~L~~ll~~~ 488 (546)
...+..|+++|...-. . -.+.-.-.+.+|..++..+...+..++. ...-..|++++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2367778887765210 1 1133444566667777765555555443 23557899999988
Q ss_pred CHHHHHHHHHHHHHhhcCC
Q 009036 489 SEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 489 s~~~k~~A~~lL~~L~~~~ 507 (546)
.+.+|+.+.++|..||+.+
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 8999999999999998654
No 97
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.63 E-value=0.00064 Score=70.25 Aligned_cols=112 Identities=18% Similarity=0.106 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC--CchHHHHHhcCChHHHHH
Q 009036 240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE--KINKMLIVRSGLVPPIVD 317 (546)
Q Consensus 240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~nk~~i~~~g~l~~Lv~ 317 (546)
.++.+...+..|.++.+++++.+..+++.|++..++--+...++.+..+++.+|.|++.+ ...+.+|++..+-+-|.-
T Consensus 235 ~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~ 314 (832)
T KOG3678|consen 235 PVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFP 314 (832)
T ss_pred cHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhh
Confidence 567778888999999999999999999999999999988889999999999999999986 577888888776666666
Q ss_pred HHccCCHHHHHHHHHHHhhcccccchhhHHhhcC
Q 009036 318 VLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLG 351 (546)
Q Consensus 318 lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g 351 (546)
+-.+.+.-++.+|+-++..|+.+.+....+...|
T Consensus 315 LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~ 348 (832)
T KOG3678|consen 315 LAFSKDELLRLHACLAVAVLATNKEVEREVRKSG 348 (832)
T ss_pred hhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhcc
Confidence 6666788889999999998887766555444443
No 98
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.63 E-value=0.0069 Score=62.54 Aligned_cols=182 Identities=24% Similarity=0.267 Sum_probs=127.0
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
..++.+++.|.+.++.++..|...+..+... -+++.|..+|.+.+..++..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 4678899999888888999988886554432 46899999999999999999999888653
Q ss_pred HhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHH------------HHHHHHH
Q 009036 307 VRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSER------------TQHDSAL 373 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~------------~~~~A~~ 373 (546)
....++.|+..|. +.+..+|..++.+|..+ ....++..|+..+.+.... ++..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~----------~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKL----------GDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc----------CchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 2357899999999 58999999999999988 3345588888888876532 2333333
Q ss_pred HHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHH
Q 009036 374 ALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQ 451 (546)
Q Consensus 374 aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~ 451 (546)
+|..+ ...-+++.|..++.+.. ++..+...|..+.... ..+...+...+.. .+..++
T Consensus 172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~---~~~~vr 230 (335)
T COG1413 172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSD---ESLEVR 230 (335)
T ss_pred HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcC---CCHHHH
Confidence 33332 23347788888888765 7888888888776643 2233444555544 234555
Q ss_pred HHHHHHHHH
Q 009036 452 ESCVSVLYA 460 (546)
Q Consensus 452 e~Av~~L~~ 460 (546)
..++..|..
T Consensus 231 ~~~~~~l~~ 239 (335)
T COG1413 231 KAALLALGE 239 (335)
T ss_pred HHHHHHhcc
Confidence 555444433
No 99
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.62 E-value=5.6e-05 Score=59.72 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=31.8
Q ss_pred CcccccccCCC-------------eecCCCccccHHHHHHHHhcCCCCCCCCC
Q 009036 48 CPVSGSLMADP-------------VVVSSGHTFERACAHVCKTLGFTPTLVDG 87 (546)
Q Consensus 48 CpI~~~~m~dP-------------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~ 87 (546)
|+||++-|.|| +..+|||.|-..||.+|++... +||.|+
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 99999999555 3448999999999999997554 899885
No 100
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.62 E-value=3.1e-05 Score=76.62 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=53.4
Q ss_pred CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHH
Q 009036 41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFS----TVIPNLALKSTILNW 108 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~----~l~pn~~l~~~i~~~ 108 (546)
++-....|++|..+|.|+-|+ .|=|||||+||-+++.. ...||.|...+..+ .+.++++|+.++...
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 455778899999999999886 89999999999999886 55777777654433 577778888887554
No 101
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=7.7e-05 Score=79.08 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=60.4
Q ss_pred CCCCCceeCcccccccCCCeecC-CCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVS-SGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQS 113 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~ 113 (546)
.++|++|+.|+...+|+|||+++ +|.|.||+.|..++-.+. +.|-.+.|+...+++||-.||+.|..|....+
T Consensus 849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~-tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDG-TDPFNRMPLTLDDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCC-CCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence 47999999999999999999995 589999999988764332 34446678888899999999999999955443
No 102
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.56 E-value=0.00036 Score=67.87 Aligned_cols=178 Identities=21% Similarity=0.149 Sum_probs=109.4
Q ss_pred CCCCHHHHHHHHHHHHHHhccC--hhhhHHhhc--CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC-chHHHHHhcCC
Q 009036 237 KSPQVHEVEEALISLRKLTRSR--EETRVSLCT--PRLLLALRSLIISRYTNVQVNAVAALVNLSLEK-INKMLIVRSGL 311 (546)
Q Consensus 237 ~s~~~~~~~~Al~~L~~La~~~--~~~r~~l~~--~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~nk~~i~~~g~ 311 (546)
.+.+|+.|.+|+..|+.+.+.+ ......+.+ ..++..+...+.+....+...|+.++..|+..- ..-..+. ...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHH
Confidence 6789999999999999999877 233333332 145566777777777788899999998888742 2222222 347
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch-hHHHHHh
Q 009036 312 VPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS-NRTKLVK 390 (546)
Q Consensus 312 l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~-n~~~iv~ 390 (546)
++.|+..+.++...++..|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+..... ....+-.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 899999999999999999999999887654311111 14556666778899999999998888765322 1111111
Q ss_pred ----cCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036 391 ----LGSVNALLGMVNSGH--MTGRVLLILGNLAS 419 (546)
Q Consensus 391 ----~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~ 419 (546)
...++.+..++.+++ +++.|-.++..+..
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 246777888888765 88888888887754
No 103
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=3.3e-05 Score=84.50 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=49.1
Q ss_pred CCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 009036 43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIP 97 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 97 (546)
-.-+.||.|..=.+|-|++.|||-||-.||+.-++.....||.|...+..-++.|
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 3557899999999999999999999999999988888889999999887767665
No 104
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.49 E-value=0.00014 Score=50.49 Aligned_cols=40 Identities=43% Similarity=0.578 Sum_probs=36.9
Q ss_pred cchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036 341 DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 341 ~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~ 380 (546)
++++..+.+.|+++.|+++|++.+.++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4678888999999999999999999999999999999974
No 105
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.47 E-value=0.03 Score=57.79 Aligned_cols=218 Identities=12% Similarity=0.082 Sum_probs=153.7
Q ss_pred ChHHHHHHHHccC-CHHHHHHHHHHHHHhhcCCchHHHHHh-------cCChHHHHHHHccCCHHHHHHHHHHHhhcccc
Q 009036 269 RLLLALRSLIISR-YTNVQVNAVAALVNLSLEKINKMLIVR-------SGLVPPIVDVLMAGSAEAQEHACGAIFSLALD 340 (546)
Q Consensus 269 g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~nk~~i~~-------~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~ 340 (546)
..+..++.++... ..+...-++..+..+-..+..+..+.. .-.-...+.+|...+.-+...+.++|..++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 3566677777653 344445555555555444443333321 23467788899999888888888999888765
Q ss_pred cchhhHHhhcCC-hHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc----hHHHHHHHHH
Q 009036 341 DQNKTAIGVLGA-LPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG----HMTGRVLLIL 414 (546)
Q Consensus 341 ~~~k~~i~~~g~-l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~----~~~e~al~~L 414 (546)
...+....+... ...|-..+.+ .+.+....|+.+|-.+...++.|..++.+.++..|+..+.+. .++...+-++
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 433222212111 2233344444 567777889999999999999999999999999999999432 2888999999
Q ss_pred HHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh------hhHHHHHHCCcHHHHHHHHhcC
Q 009036 415 GNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL------RFKGLAAAAGMAEVLMRMERVG 488 (546)
Q Consensus 415 ~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~------~~~~~~~~~g~v~~L~~ll~~~ 488 (546)
+.|.-++...+.+...+.|+.|+++++.. .-+++..-+++++.|++..++ .....+...++.+.+..|.+..
T Consensus 225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~--~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk 302 (442)
T KOG2759|consen 225 WLLTFNPHAAEKLKRFDLIQDLSDIVKES--TKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK 302 (442)
T ss_pred HHhhcCHHHHHHHhhccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence 99999888887776788999999999985 346777888899999988552 3334567778778777776655
No 106
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.45 E-value=0.0008 Score=54.71 Aligned_cols=86 Identities=27% Similarity=0.353 Sum_probs=70.3
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh
Q 009036 271 LLALRSLI-ISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV 349 (546)
Q Consensus 271 i~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~ 349 (546)
|+.|+..| .++++.++..++.+|.++. ....++.|+.++++.++.+|..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 67899988 7889999999999999542 124689999999999999999999999988 34
Q ss_pred cCChHHHHHhhccC-CHHHHHHHHHHHH
Q 009036 350 LGALPPLLHLLKSD-SERTQHDSALALY 376 (546)
Q Consensus 350 ~g~l~~Lv~lL~~~-~~~~~~~A~~aL~ 376 (546)
..+++.|.+++.++ +..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 56899999999875 5556788887763
No 107
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.39 E-value=0.011 Score=61.08 Aligned_cols=191 Identities=23% Similarity=0.240 Sum_probs=133.1
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG 348 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~ 348 (546)
..++.++.++.+.+..++..|...+..+. ....++.|..+|.+.++.+|..|+.+|..+ +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence 56888899999999999998888866542 235789999999999999999999977766 4
Q ss_pred hcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHH-
Q 009036 349 VLGALPPLLHLLK-SDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVA- 426 (546)
Q Consensus 349 ~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~- 426 (546)
....++.|+.+|. +.+..++..|+.+|..+-.. .++..|+.++.+..... +...+... ....|..
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~-a~~~~~~~--~~~~r~~a 169 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGS-AAAALDAA--LLDVRAAA 169 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhh-hhhhccch--HHHHHHHH
Confidence 4668899999998 58899999999999987432 24777888887654211 11111000 0011111
Q ss_pred ------HHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 009036 427 ------VLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRML 500 (546)
Q Consensus 427 ------i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL 500 (546)
+.....++.+...+.. ....++..|+.+|..+.... ..+...+..++.+.+..++..+...|
T Consensus 170 ~~~l~~~~~~~~~~~l~~~l~~---~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 170 AEALGELGDPEAIPLLIELLED---EDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred HHHHHHcCChhhhHHHHHHHhC---chHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 1123477888888888 34688999999988877553 22446677777777777777776666
Q ss_pred HHhh
Q 009036 501 ELMK 504 (546)
Q Consensus 501 ~~L~ 504 (546)
..+-
T Consensus 238 ~~~~ 241 (335)
T COG1413 238 GEIG 241 (335)
T ss_pred cccC
Confidence 5554
No 108
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0076 Score=64.87 Aligned_cols=219 Identities=17% Similarity=0.183 Sum_probs=146.4
Q ss_pred hcCChHHHHHHHHcc---CCHHHHHHHHHHHHHhhcC---CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccc
Q 009036 266 CTPRLLLALRSLIIS---RYTNVQVNAVAALVNLSLE---KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL 339 (546)
Q Consensus 266 ~~~g~i~~Lv~lL~s---~~~~v~~~A~~~L~nLs~~---~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~ 339 (546)
.++.+++.+..+|.+ ....+++.|..+...+-.. ...+ -.++.++.-+.......+..++.+|..|+.
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK------~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK------LLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh------HhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456777777777653 4566776665554433221 1111 245555555544467788899999998877
Q ss_pred ccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch-HHHHHHHHHHHhh
Q 009036 340 DDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH-MTGRVLLILGNLA 418 (546)
Q Consensus 340 ~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~-~~e~al~~L~nLa 418 (546)
....+-......++|.|.+.|-+..+++++.+..+|..++..-+|.. |.. .+|.|++.+.++. ....++..|.
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~--~ip~Lld~l~dp~~~~~e~~~~L~--- 357 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQK--IIPTLLDALADPSCYTPECLDSLG--- 357 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHH--HHHHHHHHhcCcccchHHHHHhhc---
Confidence 76666666678899999999999999999999999999998766655 222 5888999998876 5555555543
Q ss_pred CCcccHHHHH---hCCcHHHHHHHHccCC-CCCHHHHHHHHHHHHHHhcCC--h-hhHHHHHHCCcHHHHHHHHhcCCHH
Q 009036 419 SCSDGRVAVL---DSGGVECLVGMLRKGT-ELSESTQESCVSVLYALSHGG--L-RFKGLAAAAGMAEVLMRMERVGSEH 491 (546)
Q Consensus 419 ~~~e~r~~i~---~~g~i~~Lv~lL~~~~-~~s~~~~e~Av~~L~~L~~~~--~-~~~~~~~~~g~v~~L~~ll~~~s~~ 491 (546)
+..++ +.-.+..++.+|.++. ..+...+..++.+.+|+|.-- + .....+-. .++-|-..+.+.-|+
T Consensus 358 -----~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~--Llp~lk~~~~d~~PE 430 (569)
T KOG1242|consen 358 -----ATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS--LLPGLKENLDDAVPE 430 (569)
T ss_pred -----ceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH--HhhHHHHHhcCCChh
Confidence 22232 3345556666665531 134567788999999999832 2 22222222 556677777777899
Q ss_pred HHHHHHHHHHHh
Q 009036 492 VKEKAKRMLELM 503 (546)
Q Consensus 492 ~k~~A~~lL~~L 503 (546)
+|.-|..+|..+
T Consensus 431 vR~vaarAL~~l 442 (569)
T KOG1242|consen 431 VRAVAARALGAL 442 (569)
T ss_pred HHHHHHHHHHHH
Confidence 999999888444
No 109
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.021 Score=57.04 Aligned_cols=236 Identities=14% Similarity=0.116 Sum_probs=166.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhcCCc-h----HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchh
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSLEKI-N----KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNK 344 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~-n----k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k 344 (546)
..+.|-.-|..++..++.-++..++.+..+.+ | -..+++.+.++.++..+...+.++-..|...|..++..+..-
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHH
Confidence 34444444556788888888888887776532 2 223357899999999999999999999999999999888877
Q ss_pred hHHhhcCChHHH--HHhhccCCHHHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhC-ch--HHHHHHHHHHHhh
Q 009036 345 TAIGVLGALPPL--LHLLKSDSERTQHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNS-GH--MTGRVLLILGNLA 418 (546)
Q Consensus 345 ~~i~~~g~l~~L--v~lL~~~~~~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~-~~--~~e~al~~L~nLa 418 (546)
+.|.....+..+ ..+-..-+.-++...+..+..+.+ .++.....-..|.+..|..-+.. .+ +...++.....|+
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 777766555433 222223344555666677777765 55555666667999888887776 33 7788999999999
Q ss_pred CCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC------C-hhhH-HHHHHCCcHHHHHHHHhcCCH
Q 009036 419 SCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG------G-LRFK-GLAAAAGMAEVLMRMERVGSE 490 (546)
Q Consensus 419 ~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~------~-~~~~-~~~~~~g~v~~L~~ll~~~s~ 490 (546)
....+|+.+.+.|.|..+..++.... .++-.+-.++.....+... . +..+ ..+. .++..++++...++
T Consensus 243 eteHgreflaQeglIdlicnIIsGad-sdPfekfralmgfgkffgkeaimdvseeaicealii---aidgsfEmiEmnDp 318 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGAD-SDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII---AIDGSFEMIEMNDP 318 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCC-CCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH---HHHhhHHhhhcCCc
Confidence 99999999999999999999997753 3454555455444443321 1 1111 1221 45667888899999
Q ss_pred HHHHHHHHHHHHhhcCCcc
Q 009036 491 HVKEKAKRMLELMKGRAEE 509 (546)
Q Consensus 491 ~~k~~A~~lL~~L~~~~~~ 509 (546)
...+.|...|-.|-...++
T Consensus 319 daieaAiDalGilGSnteG 337 (524)
T KOG4413|consen 319 DAIEAAIDALGILGSNTEG 337 (524)
T ss_pred hHHHHHHHHHHhccCCcch
Confidence 9999999999999776543
No 110
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.04 Score=55.07 Aligned_cols=244 Identities=13% Similarity=0.077 Sum_probs=164.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChhh----hHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036 229 EDYFVQKLKSPQVHEVEEALISLRKLTRSREET----RVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM 304 (546)
Q Consensus 229 i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~----r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~ 304 (546)
.+.|-..|..++..++.-++..+..+..+++.| ...++.+|.++.++..+-..|.++-..|...|..++..+....
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence 345566677777777788888888877776633 2344578999999999999999999999999999999888888
Q ss_pred HHHhcCChHHHHH--HHccCCHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhc
Q 009036 305 LIVRSGLVPPIVD--VLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLLKS-DSERTQHDSALALYHLSL 380 (546)
Q Consensus 305 ~i~~~g~l~~Lv~--lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~ 380 (546)
.|.+...++.+-. +-...+.-+|.....++..+... ++........|.+..|..-|+. ++.-++.+++.....|..
T Consensus 164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 8887766554432 22233445555566666555443 3445555567888888877776 566677888889999988
Q ss_pred CchhHHHHHhcCcHHHHHHHHhCch----HHHHHHHHHHHhh----CCcccHHHHHhC--CcHHHHHHHHccCCCCCHHH
Q 009036 381 VKSNRTKLVKLGSVNALLGMVNSGH----MTGRVLLILGNLA----SCSDGRVAVLDS--GGVECLVGMLRKGTELSEST 450 (546)
Q Consensus 381 ~~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa----~~~e~r~~i~~~--g~i~~Lv~lL~~~~~~s~~~ 450 (546)
.+-.++-+-..|+|..+..++...+ -+-.++.....+- ...-.-+++.+. -+|...+.++.. .++..
T Consensus 244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEm---nDpda 320 (524)
T KOG4413|consen 244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEM---NDPDA 320 (524)
T ss_pred HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhc---CCchH
Confidence 7777877788899999999997533 2333454444333 222222333332 234444555555 46889
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHCC
Q 009036 451 QESCVSVLYALSHGGLRFKGLAAAAG 476 (546)
Q Consensus 451 ~e~Av~~L~~L~~~~~~~~~~~~~~g 476 (546)
++.|+.+|..|.... +..+++...|
T Consensus 321 ieaAiDalGilGSnt-eGadlllkTg 345 (524)
T KOG4413|consen 321 IEAAIDALGILGSNT-EGADLLLKTG 345 (524)
T ss_pred HHHHHHHHHhccCCc-chhHHHhccC
Confidence 999999999887665 3444444444
No 111
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.053 Score=56.27 Aligned_cols=255 Identities=17% Similarity=0.117 Sum_probs=169.5
Q ss_pred HHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC------ch----HHHHHhcCChHHHH
Q 009036 247 ALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK------IN----KMLIVRSGLVPPIV 316 (546)
Q Consensus 247 Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~------~n----k~~i~~~g~l~~Lv 316 (546)
.+..+..+|. -+.....+++..+++.|+.+|.+.+.++....+..|..|...+ +. -..+++.++++.|+
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 3444555554 3677788999999999999999999999988888888887532 22 23445678899998
Q ss_pred HHHccCCHH------HHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCc-hhHH
Q 009036 317 DVLMAGSAE------AQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSD--SERTQHDSALALYHLSLVK-SNRT 386 (546)
Q Consensus 317 ~lL~~~~~~------~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~~Ls~~~-~n~~ 386 (546)
.-+..-+.. -..++..++.|+.... +....+.+.|.+.-|+.-+... -..-+..|..+|.-+..+. +|+.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 877644333 3445667777876654 5566666677777766655432 2234567777777776644 4888
Q ss_pred HHHhcCcHHHHHHHHhC-----c------hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036 387 KLVKLGSVNALLGMVNS-----G------HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCV 455 (546)
Q Consensus 387 ~iv~~Gav~~Lv~lL~~-----~------~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av 455 (546)
......+|..|++-+.- + ..-++...+|+.+...+++|..++...+++-..-+++.. ...+..++
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K----k~sr~Sal 338 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK----KVSRGSAL 338 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH----HHhhhhHH
Confidence 88888999999887742 1 145556666776777899999999877776555555541 45678888
Q ss_pred HHHHHHhcCCh--hhHHHHHHCCcHHHHHHH-HhcCC---------HHHHHHHHHHHHHhhcC
Q 009036 456 SVLYALSHGGL--RFKGLAAAAGMAEVLMRM-ERVGS---------EHVKEKAKRMLELMKGR 506 (546)
Q Consensus 456 ~~L~~L~~~~~--~~~~~~~~~g~v~~L~~l-l~~~s---------~~~k~~A~~lL~~L~~~ 506 (546)
.+|-....+.+ ..+.-..+.+++..++-+ ++.+. ...-+....+|+.|...
T Consensus 339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 99977766543 444455555666666555 43332 23345555666555543
No 112
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.018 Score=61.22 Aligned_cols=257 Identities=14% Similarity=0.081 Sum_probs=169.7
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhhHHhh--cCChHHHHHHHHccCCHHHHHHHHHHHHHhh----cCCchHHHHHhcCC
Q 009036 238 SPQVHEVEEALISLRKLTRSREETRVSLC--TPRLLLALRSLIISRYTNVQVNAVAALVNLS----LEKINKMLIVRSGL 311 (546)
Q Consensus 238 s~~~~~~~~Al~~L~~La~~~~~~r~~l~--~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs----~~~~nk~~i~~~g~ 311 (546)
.-++..|.--+..|..|-...+ . .++ -..+++-|..+|..++.+++..+-.+|.++- ..+... --...
T Consensus 178 ~~n~~tR~flv~Wl~~Lds~P~--~-~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~ 251 (675)
T KOG0212|consen 178 VINPMTRQFLVSWLYVLDSVPD--L-EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDM 251 (675)
T ss_pred cCCchHHHHHHHHHHHHhcCCc--H-HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---Ccccc
Confidence 3355566666666665543322 1 111 2346777788888888998876666555443 333332 11356
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCH-HHHHHHHH---HHHHhhcCchhHHH
Q 009036 312 VPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSE-RTQHDSAL---ALYHLSLVKSNRTK 387 (546)
Q Consensus 312 l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~-~~~~~A~~---aL~~Ls~~~~n~~~ 387 (546)
++.++.-+++..++++..|..-|..+...........-.|.+..++..+.+... ..+..+.. .|..++........
T Consensus 252 i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~ 331 (675)
T KOG0212|consen 252 INVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE 331 (675)
T ss_pred hhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc
Confidence 788888899999999999988888776665555555557888888888876543 23333332 35555554444433
Q ss_pred HHhc-CcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036 388 LVKL-GSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG 464 (546)
Q Consensus 388 iv~~-Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~ 464 (546)
++. ..+..|...+.+.. ++-.++.-+..|-....|.-........+.|++-|.+ .++++...++..|.++|.+
T Consensus 332 -id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd---~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 332 -IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSD---RSDEVVLLALSLLASICSS 407 (675)
T ss_pred -cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcC---chhHHHHHHHHHHHHHhcC
Confidence 444 46777888887654 6666777777666655555544556788999999988 5689999999999999986
Q ss_pred ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 465 GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 465 ~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
.... ... ..+..|+++....+.-.+..+.-+++.||-.-+
T Consensus 408 ~~~~-~~~---~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~ 447 (675)
T KOG0212|consen 408 SNSP-NLR---KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLN 447 (675)
T ss_pred cccc-cHH---HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhC
Confidence 5332 111 145567777778778888999999999986543
No 113
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.29 E-value=0.0015 Score=53.16 Aligned_cols=86 Identities=23% Similarity=0.261 Sum_probs=69.7
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 009036 229 EDYFVQKL-KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV 307 (546)
Q Consensus 229 i~~lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~ 307 (546)
++.|++.| ++.++.+|..++..|..+.. ..+++.|+.++.++++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 46788988 88899999999999884322 256999999999999999999999999873
Q ss_pred hcCChHHHHHHHccC-CHHHHHHHHHHHh
Q 009036 308 RSGLVPPIVDVLMAG-SAEAQEHACGAIF 335 (546)
Q Consensus 308 ~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~ 335 (546)
....++.|.+++.+. +..++..|+.+|.
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 345899999999876 5667888887763
No 114
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.011 Score=63.80 Aligned_cols=172 Identities=16% Similarity=0.124 Sum_probs=126.3
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH--HHh---cCChHHHHHHHccCCHHHHHHHHHHHhhcccccc
Q 009036 268 PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML--IVR---SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ 342 (546)
Q Consensus 268 ~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~--i~~---~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~ 342 (546)
+.++|.|..+|.+++...++.|..+|..++.+....-. ... .-.+|.++.++++.++.+|..|...+........
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 45899999999999999999999999999875321110 001 1368999999999999999999999987655443
Q ss_pred hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC
Q 009036 343 NKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC 420 (546)
Q Consensus 343 ~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~ 420 (546)
..-...-...++.|+.+-.+++++++++.+.+|..|......+-.-.-.++|+.++....+.+ +.-.|+.-...+|..
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 322223356788888888888999999999999999776544332223367777777776644 777888888889988
Q ss_pred cccHHHHHh--CCcHHHHHHH
Q 009036 421 SDGRVAVLD--SGGVECLVGM 439 (546)
Q Consensus 421 ~e~r~~i~~--~g~i~~Lv~l 439 (546)
+-.+..+.. ...||.|+.-
T Consensus 287 pi~~~~L~p~l~kliPvLl~~ 307 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSG 307 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHcc
Confidence 866666654 3567777654
No 115
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.033 Score=60.09 Aligned_cols=221 Identities=14% Similarity=0.135 Sum_probs=143.0
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
..++.++..+.+....+|..|....+.+...-+.... .-++|.++.-+..........++..|..++.....+...
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~ 291 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL 291 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH
Confidence 4455566666666777888877777665542111110 123444444444446677788889999888876666666
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT 386 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~ 386 (546)
.-..++|.|.++|.+..+++|..+..+|..+...-+|... ...++.|++.+.+.+..+ ..++..|..-.....
T Consensus 292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~--- 364 (569)
T KOG1242|consen 292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYT-PECLDSLGATTFVAE--- 364 (569)
T ss_pred HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccch-HHHHHhhcceeeeee---
Confidence 6678999999999999999999999999999877666552 236777888887654333 444444443322221
Q ss_pred HHHhcCcHHHHHHHHhC------chHHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036 387 KLVKLGSVNALLGMVNS------GHMTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQESCVSVL 458 (546)
Q Consensus 387 ~iv~~Gav~~Lv~lL~~------~~~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L 458 (546)
|+.-.+..++.+|.. ..+...++.++.|+|..-+....+.. ...+|.|-..+.. ..+++++-+..+|
T Consensus 365 --V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d---~~PEvR~vaarAL 439 (569)
T KOG1242|consen 365 --VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD---AVPEVRAVAARAL 439 (569)
T ss_pred --ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC---CChhHHHHHHHHH
Confidence 333455556666643 23788899999999986655555543 2234444444444 3588999999999
Q ss_pred HHHhc
Q 009036 459 YALSH 463 (546)
Q Consensus 459 ~~L~~ 463 (546)
..+-.
T Consensus 440 ~~l~e 444 (569)
T KOG1242|consen 440 GALLE 444 (569)
T ss_pred HHHHH
Confidence 77654
No 116
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.25 E-value=0.022 Score=60.34 Aligned_cols=181 Identities=14% Similarity=0.043 Sum_probs=123.1
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
......|+..|++.++.++..++..+...- ....+.|..+|.+.++.++..|+.+|..+-
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~-------- 175 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELP-------- 175 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhc--------
Confidence 456778889998889988888776554411 234678999999999999999999999764
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR 385 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~ 385 (546)
....++.|...+.+.++.+|..|+..|..+ +...++..+..+.......... ++.++..+...+
T Consensus 176 --~~~a~~~L~~al~d~~~~VR~aA~~al~~l----------G~~~A~~~l~~~~~~~g~~~~~-~l~~~lal~~~~--- 239 (410)
T TIGR02270 176 --RRLSESTLRLYLRDSDPEVRFAALEAGLLA----------GSRLAWGVCRRFQVLEGGPHRQ-RLLVLLAVAGGP--- 239 (410)
T ss_pred --cccchHHHHHHHcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHhccCccHHH-HHHHHHHhCCch---
Confidence 345778888889999999999999999666 2233455555544333222222 222222222111
Q ss_pred HHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 386 TKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 386 ~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
.++..|..++.++.++..++.+|..+- ....++.|+..+.. +.....|..++..|+-
T Consensus 240 ------~a~~~L~~ll~d~~vr~~a~~AlG~lg----------~p~av~~L~~~l~d-----~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 240 ------DAQAWLRELLQAAATRREALRAVGLVG----------DVEAAPWCLEAMRE-----PPWARLAGEAFSLITG 296 (410)
T ss_pred ------hHHHHHHHHhcChhhHHHHHHHHHHcC----------CcchHHHHHHHhcC-----cHHHHHHHHHHHHhhC
Confidence 467778888887777777777776533 23577788887766 3466777777766654
No 117
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0097 Score=63.19 Aligned_cols=278 Identities=15% Similarity=0.079 Sum_probs=176.7
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhH-HhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRV-SLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~-~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
.+-..+.++..++......+++.|-.+-++-..-+. .+--.++||.|-.-+...++..+...+..|..|-..+.-.-.=
T Consensus 125 ~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~ 204 (675)
T KOG0212|consen 125 EIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMIS 204 (675)
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHh
Confidence 333444455444444444555555555543222222 3333567788877777788999988888887765544332111
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR 385 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~ 385 (546)
.-...++.|..+|.+.+.+++..+-.+|.++...=.++....+ ...++.|+.-+.+.++..+..|+.-|..+..-....
T Consensus 205 yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~ 284 (675)
T KOG0212|consen 205 YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD 284 (675)
T ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc
Confidence 1234677888888899999998777777655332122222222 457888899999999999988888887776655444
Q ss_pred HHHHhcCcHHHHHHHHhCch---HHHHHH---HHHHHhhCCcccHHHHHhC-CcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036 386 TKLVKLGSVNALLGMVNSGH---MTGRVL---LILGNLASCSDGRVAVLDS-GGVECLVGMLRKGTELSESTQESCVSVL 458 (546)
Q Consensus 386 ~~iv~~Gav~~Lv~lL~~~~---~~e~al---~~L~nLa~~~e~r~~i~~~-g~i~~Lv~lL~~~~~~s~~~~e~Av~~L 458 (546)
.-..-.|.+..++.++.+.+ .++.+. ..|..+++.+..... ++- ..+..+.+.+.. +..+.+-.++..+
T Consensus 285 ~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~---~~~~tri~~L~Wi 360 (675)
T KOG0212|consen 285 LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSD---DREETRIAVLNWI 360 (675)
T ss_pred hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhc---chHHHHHHHHHHH
Confidence 44444577777777776643 333322 235556665555544 443 467777788877 4577888888887
Q ss_pred HHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccc
Q 009036 459 YALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEE 510 (546)
Q Consensus 459 ~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~ 510 (546)
..|-...+ .+-..-.......|+.-+.+.++.+-..+..+|..++....+.
T Consensus 361 ~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~ 411 (675)
T KOG0212|consen 361 ILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP 411 (675)
T ss_pred HHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc
Confidence 77755321 2222223346789999999999999999999999999877653
No 118
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00016 Score=70.50 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=43.4
Q ss_pred eeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHH
Q 009036 46 FLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKST 104 (546)
Q Consensus 46 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~ 104 (546)
|.|-||.+.|.+||++.|||+||..|-.+.+. ...+|.+|.+... ....+...|...
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~-g~~~~akeL~~~ 298 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTH-GSFNVAKELLVS 298 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccc-cCCcceecccccc-cccchHHHHHHH
Confidence 78999999999999999999999999876554 3458999987643 244454444443
No 119
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.0061 Score=64.33 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=138.5
Q ss_pred HHHHHHHhhcC-CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHHHhhccCCHH
Q 009036 289 AVAALVNLSLE-KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLLKSDSER 366 (546)
Q Consensus 289 A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~ 366 (546)
++..|..++.. ..-|.-+.+..+.++|+++|..++..+..-+...++++..- ...++.+.+.|.|..|+.++.+.+..
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 34445555554 34466667778899999999997777777788888887665 34578888899999999999988889
Q ss_pred HHHHHHHHHHHhhcCc--hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC----cccHHHHHhCC----cHH
Q 009036 367 TQHDSALALYHLSLVK--SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC----SDGRVAVLDSG----GVE 434 (546)
Q Consensus 367 ~~~~A~~aL~~Ls~~~--~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~----~e~r~~i~~~g----~i~ 434 (546)
.+++..|.|++|-.+. +.+.+.+..-++..++++..++. +++.++.+|.|+.-. ++.++.++... ...
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 9999999999998743 34667788888999999998877 899999999999642 23344444322 345
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHH-HHHCCcHHHHHHHH
Q 009036 435 CLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGL-AAAAGMAEVLMRME 485 (546)
Q Consensus 435 ~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~-~~~~g~v~~L~~ll 485 (546)
.|++.++.. ++-..+..+.+|.+++..++..+.. ..+...+..+.+++
T Consensus 569 ~l~~k~e~~---np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 569 RLIDKYEEN---NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHhc---CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 666667663 3455556678888887655455553 44445555554443
No 120
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.14 Score=58.27 Aligned_cols=252 Identities=15% Similarity=0.120 Sum_probs=157.1
Q ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhc
Q 009036 231 YFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRS 309 (546)
Q Consensus 231 ~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~ 309 (546)
-++..|. ..+.++|.-|+..+..+.. +...-..+++.|.+-.|+.+|.+ -+..++.++.+|..|+...+....-.+.
T Consensus 1775 l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~h 1852 (2235)
T KOG1789|consen 1775 LLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEH 1852 (2235)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhc
Confidence 3444442 3456778888887766554 45667778888888888888864 5667888999999999987766666778
Q ss_pred CChHHHHHHHccC-CHHHHHHHHHHHhhccccc--chhhHHhh------------cCChHHHHHhhcc--CCHHH-----
Q 009036 310 GLVPPIVDVLMAG-SAEAQEHACGAIFSLALDD--QNKTAIGV------------LGALPPLLHLLKS--DSERT----- 367 (546)
Q Consensus 310 g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~------------~g~l~~Lv~lL~~--~~~~~----- 367 (546)
|++.-+..+|-.. ++..|..|+.+|..|..+. ..|..|-- ...-++.|+++.. +++++
T Consensus 1853 g~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~ 1932 (2235)
T KOG1789|consen 1853 GGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEV 1932 (2235)
T ss_pred CchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHh
Confidence 8888888888754 7899999999999886654 11222211 1112444444433 12211
Q ss_pred -HHHHHHHHHH---------------------------------------------------------------------
Q 009036 368 -QHDSALALYH--------------------------------------------------------------------- 377 (546)
Q Consensus 368 -~~~A~~aL~~--------------------------------------------------------------------- 377 (546)
+...-..+..
T Consensus 1933 ~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm 2012 (2235)
T KOG1789|consen 1933 TRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELM 2012 (2235)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHh
Confidence 0000001111
Q ss_pred -------------------hhcC-chhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCCcccHHHHHhCCcHHH
Q 009036 378 -------------------LSLV-KSNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNLASCSDGRVAVLDSGGVEC 435 (546)
Q Consensus 378 -------------------Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~ 435 (546)
|... +.-...+-..|-+|.++..+... .+-..|+++|..|+.+.-..+++....++..
T Consensus 2013 ~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~ 2092 (2235)
T KOG1789|consen 2013 SRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDG 2092 (2235)
T ss_pred cCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchh
Confidence 1110 11111222223333333332211 1345688899999988888888988888888
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcC
Q 009036 436 LVGMLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVG 488 (546)
Q Consensus 436 Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~ 488 (546)
+++.|+.. ....-.|+.+|-.+... ..+....+...|.++.|+.++...
T Consensus 2093 ~m~~mkK~----~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2093 IMKSMKKQ----PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred hHHHHHhc----chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 99888774 33445788888877663 335555677889999999998754
No 121
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.02 E-value=0.011 Score=57.46 Aligned_cols=183 Identities=13% Similarity=0.054 Sum_probs=109.7
Q ss_pred ccCCHHHHHHHHHHHhhccccc---chhhHHhh--cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcH
Q 009036 320 MAGSAEAQEHACGAIFSLALDD---QNKTAIGV--LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSV 394 (546)
Q Consensus 320 ~~~~~~~~~~Aa~~L~~Ls~~~---~~k~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav 394 (546)
.+.+-+.|..|+.-|..+.... .....+.. ...+..+...+.+....+.+.|+.+|..|+..-.....-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4457888888888888876554 22233322 245667777777767778899999999988743333332333578
Q ss_pred HHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCc-HHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh----h
Q 009036 395 NALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGG-VECLVGMLRKGTELSESTQESCVSVLYALSHGGL----R 467 (546)
Q Consensus 395 ~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~-i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~----~ 467 (546)
+.|++.+.++. +++.|..+|..++..-..-. .. +..+...+.+ .++..+..++..|..+..... .
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~-----~~~~~~l~~~~~~---Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSP-----KILLEILSQGLKS---KNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT----S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH-----HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHccchHhh
Confidence 88888888754 78888899888886443111 11 2333334444 678999999999988866322 2
Q ss_pred hHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccc
Q 009036 468 FKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEE 510 (546)
Q Consensus 468 ~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~ 510 (546)
......-..+++.+..++.+.++.+|+.|..++..|....++.
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 2221111236789999999999999999999999997654443
No 122
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.02 E-value=0.08 Score=56.94 Aligned_cols=238 Identities=16% Similarity=0.167 Sum_probs=154.8
Q ss_pred CchhHHHHHHhc----------CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC-----CHHHHHHH
Q 009036 225 SNEQEDYFVQKL----------KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR-----YTNVQVNA 289 (546)
Q Consensus 225 ~~~~i~~lv~~L----------~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~-----~~~v~~~A 289 (546)
+.+.+..|++.= ...++++..+|++.|.|+...++..|..+++.|..+.++..|+.. +.++.--.
T Consensus 20 ~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~ 99 (446)
T PF10165_consen 20 TEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLD 99 (446)
T ss_pred cHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHH
Confidence 455565555532 345788999999999999999999999999999999999999865 67777778
Q ss_pred HHHHHHhhc-CCchHHHHHhc-CChHHHHHHHcc-----------------CCHHHHHHHHHHHhhcccccchhhHHhhc
Q 009036 290 VAALVNLSL-EKINKMLIVRS-GLVPPIVDVLMA-----------------GSAEAQEHACGAIFSLALDDQNKTAIGVL 350 (546)
Q Consensus 290 ~~~L~nLs~-~~~nk~~i~~~-g~l~~Lv~lL~~-----------------~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~ 350 (546)
.++|.-++. ..+.+..+++. +++..|+..|.. ...+....++.+|+|+.........-...
T Consensus 100 ~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~ 179 (446)
T PF10165_consen 100 SRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFS 179 (446)
T ss_pred HHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhh
Confidence 888776665 45667666644 788888776631 03345667888999987664332211123
Q ss_pred CChHHHHHhhcc---------CCHHHHHHHHHHHHHhhcCc-hh-------H----HHHHhcCcHHHHHHHHhCc-----
Q 009036 351 GALPPLLHLLKS---------DSERTQHDSALALYHLSLVK-SN-------R----TKLVKLGSVNALLGMVNSG----- 404 (546)
Q Consensus 351 g~l~~Lv~lL~~---------~~~~~~~~A~~aL~~Ls~~~-~n-------~----~~iv~~Gav~~Lv~lL~~~----- 404 (546)
..++.|+.+|.. ........++.+|.|+-... .. . .......++..|+++|...
T Consensus 180 ~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~ 259 (446)
T PF10165_consen 180 PSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYE 259 (446)
T ss_pred HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcC
Confidence 455555555431 13456677778888772110 00 0 0112225677777777531
Q ss_pred --h---HHHHHHHHHHHhhCCcc-cHHHHHh---------------C-CcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 405 --H---MTGRVLLILGNLASCSD-GRVAVLD---------------S-GGVECLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 405 --~---~~e~al~~L~nLa~~~e-~r~~i~~---------------~-g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
. ...-.+.+|.+++...+ .|..+.. . ..-..|++++.+. ....+..+...|+.||
T Consensus 260 ~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~---~~~~k~~vaellf~Lc 336 (446)
T PF10165_consen 260 ALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP---DPQLKDAVAELLFVLC 336 (446)
T ss_pred cccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC---CchHHHHHHHHHHHHH
Confidence 1 23346677777776533 3333222 2 2457788888773 3789999999999999
Q ss_pred cCC
Q 009036 463 HGG 465 (546)
Q Consensus 463 ~~~ 465 (546)
..+
T Consensus 337 ~~d 339 (446)
T PF10165_consen 337 KED 339 (446)
T ss_pred hhh
Confidence 764
No 123
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.95 E-value=0.00032 Score=64.09 Aligned_cols=43 Identities=30% Similarity=0.392 Sum_probs=35.8
Q ss_pred eeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCC
Q 009036 46 FLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTT 89 (546)
Q Consensus 46 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~ 89 (546)
|.|-||.+-++.||++.|||.||-.|..+-.+. ...|-+|+..
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKA 239 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchh
Confidence 999999999999999999999999998775543 3467677654
No 124
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.90 E-value=0.00032 Score=71.28 Aligned_cols=32 Identities=34% Similarity=0.788 Sum_probs=29.3
Q ss_pred CCceeCcccccccCCCeecCCCccccHHHHHH
Q 009036 43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHV 74 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~ 74 (546)
.+++.||||...|+||+|++|||+.||.|-..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~ 33 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARN 33 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHh
Confidence 46889999999999999999999999999753
No 125
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.027 Score=63.65 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=112.5
Q ss_pred HHHHHHHHhhcccc-cchhhHHhh----cCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHH
Q 009036 327 QEHACGAIFSLALD-DQNKTAIGV----LGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGM 400 (546)
Q Consensus 327 ~~~Aa~~L~~Ls~~-~~~k~~i~~----~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~l 400 (546)
...++.+|.|+... ++....++. .|.++.++..|+. +++++.+.|+.++.-+..+.+.-..|++.|.+..|+.+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence 45677888887654 444444432 4788888888875 57889999999999999999999999999999999999
Q ss_pred HhC-chHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036 401 VNS-GHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG 464 (546)
Q Consensus 401 L~~-~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~ 464 (546)
|.+ ++.++.++.+|..|++.++-..+.+++|++..+..++... .++..+..|+..|..|..+
T Consensus 1822 LHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~--~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1822 LHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLT--NSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhcc--CcHHHHHHHHHHHHHhhhc
Confidence 987 5699999999999999999888888999999999999875 4578888899999998763
No 126
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.87 E-value=0.039 Score=54.99 Aligned_cols=232 Identities=15% Similarity=0.125 Sum_probs=158.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH-hcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccchhhHHh
Q 009036 272 LALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV-RSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQNKTAIG 348 (546)
Q Consensus 272 ~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~-~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~ 348 (546)
..|-++++.-+.-.+--|+.+|.++...++.|..+- +...-..+++++++. ..+++-+..-+++.|+...+..+.|-
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~ 231 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDID 231 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHH
Confidence 334445555566677778899999988877766654 555678889999864 78999999999999999887776664
Q ss_pred h-cCChHHHHHhhccC-CHHHHHHHHHHHHHhhcC--chhHHHHHhcCcHHHHHHHHhCc-----h-------HHHH---
Q 009036 349 V-LGALPPLLHLLKSD-SERTQHDSALALYHLSLV--KSNRTKLVKLGSVNALLGMVNSG-----H-------MTGR--- 409 (546)
Q Consensus 349 ~-~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~--~~n~~~iv~~Gav~~Lv~lL~~~-----~-------~~e~--- 409 (546)
. ...+..|+.+++.. ..++-+.++..+.|++.- ......+.-.|-+..-++.|..+ + +++.
T Consensus 232 K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~ 311 (432)
T COG5231 232 KMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ 311 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence 4 46788888888764 556778888999999872 24555666666555555555432 1 1111
Q ss_pred ---HHHHHHH----h-----hCC---------cccHHHHHhCC--cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh
Q 009036 410 ---VLLILGN----L-----ASC---------SDGRVAVLDSG--GVECLVGMLRKGTELSESTQESCVSVLYALSHGGL 466 (546)
Q Consensus 410 ---al~~L~n----L-----a~~---------~e~r~~i~~~g--~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~ 466 (546)
-+.+..+ | +-. ..+...+.+.+ .+..|.++|....+ + ..-.-|+.-+..+....+
T Consensus 312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~-n-t~i~vAc~Di~~~Vr~~P 389 (432)
T COG5231 312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNP-N-TWICVACSDIFQLVRASP 389 (432)
T ss_pred hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCC-C-ceEeeeHhhHHHHHHhCc
Confidence 1112211 1 111 23455565543 67888888887532 2 122345555666666667
Q ss_pred hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 467 RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 467 ~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
+...++..-|+-..++.++.+.++++|-.|..+++.+-.
T Consensus 390 E~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 390 EINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 888888888999999999999999999999999987753
No 127
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.15 Score=55.92 Aligned_cols=139 Identities=13% Similarity=0.194 Sum_probs=73.5
Q ss_pred ChHHHHHHHccCC-HHHHHHHHHHHh--hcccc-cchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036 311 LVPPIVDVLMAGS-AEAQEHACGAIF--SLALD-DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT 386 (546)
Q Consensus 311 ~l~~Lv~lL~~~~-~~~~~~Aa~~L~--~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~ 386 (546)
.+++|..++.+.. ..+.-....++. +++.. ++.-+.+. =+++.|-.++.+.++.++-.++.++..+...+.
T Consensus 257 Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp--- 331 (877)
T KOG1059|consen 257 LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP--- 331 (877)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH---
Confidence 5667777776652 222223333322 22222 12222221 156677777888889998888888888876432
Q ss_pred HHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 387 KLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 387 ~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
..|.+ --..++.+|.+.+ ++-+|+..|.-+..- +|-.+ ++..|+..+...+ ....+...+.-+..+|.
T Consensus 332 ~~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-kNl~e-----IVk~LM~~~~~ae--~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 332 KAVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSK-KNLME-----IVKTLMKHVEKAE--GTNYRDELLTRIISICS 401 (877)
T ss_pred HHHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhh-hhHHH-----HHHHHHHHHHhcc--chhHHHHHHHHHHHHhh
Confidence 22322 2334567777654 888899888776642 22222 2345555544422 12333344444445555
No 128
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.82 E-value=0.19 Score=57.27 Aligned_cols=236 Identities=22% Similarity=0.165 Sum_probs=149.5
Q ss_pred HhhcCChHHHHHHHHcc-----CCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHc----cCC----HHHHHHH
Q 009036 264 SLCTPRLLLALRSLIIS-----RYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLM----AGS----AEAQEHA 330 (546)
Q Consensus 264 ~l~~~g~i~~Lv~lL~s-----~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~----~~~----~~~~~~A 330 (546)
.+.+.|++..|+.++.+ .+.......+.+|...++-..||..+.+.++++.|++.|. ... .++-+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 44567999999999875 2334555566666666777899999999999999999885 323 5666777
Q ss_pred HHHHhhcccccchhhH---Hh--h--------cCChHHHHHhhccC----CHHHHHHHHHHHHHhhcCchhHHHHHhcCc
Q 009036 331 CGAIFSLALDDQNKTA---IG--V--------LGALPPLLHLLKSD----SERTQHDSALALYHLSLVKSNRTKLVKLGS 393 (546)
Q Consensus 331 a~~L~~Ls~~~~~k~~---i~--~--------~g~l~~Lv~lL~~~----~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Ga 393 (546)
..++..|......... .. . ..-+..|++.+.+. ++.+....+++|-+|+......
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~-------- 263 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK-------- 263 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH--------
Confidence 7777666443221100 00 1 11255555555543 6778888888999988755443
Q ss_pred HHHHHHHHhC---------c--hHHHHHHHHHHHhhC----Cc---ccHHHHHhCCcHHHHHHHHccCCC-----CCHHH
Q 009036 394 VNALLGMVNS---------G--HMTGRVLLILGNLAS----CS---DGRVAVLDSGGVECLVGMLRKGTE-----LSEST 450 (546)
Q Consensus 394 v~~Lv~lL~~---------~--~~~e~al~~L~nLa~----~~---e~r~~i~~~g~i~~Lv~lL~~~~~-----~s~~~ 450 (546)
+..|++.+.. . .--...+..++.++. +. .-|+.+++.|++...+++|....+ .+++-
T Consensus 264 m~~Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eW 343 (802)
T PF13764_consen 264 MDALVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEW 343 (802)
T ss_pred HHHHHHHHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHH
Confidence 2233333321 0 011223555555543 22 237889999999988888866432 22332
Q ss_pred --------HHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhhcCCc
Q 009036 451 --------QESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG-SEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 451 --------~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~-s~~~k~~A~~lL~~L~~~~~ 508 (546)
...++..|.-||.+....+.+ ...++++.|..|-+.. +..+-..|-.+|..|+....
T Consensus 344 k~~l~~psLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~ 409 (802)
T PF13764_consen 344 KEFLSRPSLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED 409 (802)
T ss_pred HHHhcCCcHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence 346888999999876555544 4456788888885544 56677778888888877443
No 129
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.00072 Score=64.02 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=31.2
Q ss_pred CCCceeCcccccccCCCeecCCCccccHHHHHHHH
Q 009036 42 PPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCK 76 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~ 76 (546)
+-+.=+|.+|++.++|||+++.||-|||+||.+++
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 44455899999999999999999999999998876
No 130
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0008 Score=65.82 Aligned_cols=47 Identities=17% Similarity=0.042 Sum_probs=40.8
Q ss_pred eCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 009036 47 LCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFS 93 (546)
Q Consensus 47 ~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 93 (546)
.|+||..-|--||.+.|+|.||.-||+--...+...|++|+.+++++
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 49999999999999999999999999775445566899999998763
No 131
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.77 E-value=0.0029 Score=43.34 Aligned_cols=38 Identities=34% Similarity=0.261 Sum_probs=35.5
Q ss_pred hhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 009036 260 ETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLS 297 (546)
Q Consensus 260 ~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs 297 (546)
.++..+.+.|+++.|+.+|.+++.+++..++++|.||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 47888999999999999999999999999999999986
No 132
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=0.061 Score=61.10 Aligned_cols=177 Identities=13% Similarity=0.030 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHH-HhhcCCchHHHHHhcCChHHHHHHHcc
Q 009036 243 EVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALV-NLSLEKINKMLIVRSGLVPPIVDVLMA 321 (546)
Q Consensus 243 ~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~-nLs~~~~nk~~i~~~g~l~~Lv~lL~~ 321 (546)
-|..|+..|..+..-.+-....-..-|..|.+++||+++-.+++.--+-+=. -|+.++..+..+++.++-.-.+.+|..
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 3666777777777666666666668899999999999998888765544433 356688888889988777777788876
Q ss_pred C---CHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhc-CchhHHHHHhcCcHH
Q 009036 322 G---SAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSL-VKSNRTKLVKLGSVN 395 (546)
Q Consensus 322 ~---~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~ 395 (546)
+ ++|-|..|+-+|..+...- -.+....+.+.+..=+..|.++ .+-.+.-++.+|..|-. +.++|-.=++.++..
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 3 6788999999999887764 3455556667777666777775 46677777778888865 566777777889999
Q ss_pred HHHHHHhCc--hHHHHHHHHHHHhhC
Q 009036 396 ALLGMVNSG--HMTGRVLLILGNLAS 419 (546)
Q Consensus 396 ~Lv~lL~~~--~~~e~al~~L~nLa~ 419 (546)
.|+.+|.+. +++..|+-+|..+-.
T Consensus 646 kL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 646 KLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 999999975 488888888888776
No 133
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.019 Score=62.05 Aligned_cols=252 Identities=16% Similarity=0.144 Sum_probs=157.6
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHH---Hhhc---C-C
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALV---NLSL---E-K 300 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~---nLs~---~-~ 300 (546)
+...++....+.+..++..|++.|..|.....-. +-.....++++...+..++..|+.++. |... . +
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~------~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS------KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccccccc------HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 3444777778888888999999888777532111 123556778888889999998876654 4431 1 1
Q ss_pred chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036 301 INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 301 ~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~ 380 (546)
.+..++. ..++..+++.+.+.+..+|..|+.+|..+-...+ +.|.+ -.=+.+..-|+.. +........|+.=-.
T Consensus 273 ~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe--e~i~Q-TLdKKlms~lRRk--r~ahkrpk~l~s~Ge 346 (823)
T KOG2259|consen 273 SEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE--EIIQQ-TLDKKLMSRLRRK--RTAHKRPKALYSSGE 346 (823)
T ss_pred hhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH--HHHHH-HHHHHHhhhhhhh--hhcccchHHHHhcCC
Confidence 2233333 3478899999999999999999999987743221 11111 1111222211110 111112222222110
Q ss_pred ---------------CchhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccC
Q 009036 381 ---------------VKSNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG 443 (546)
Q Consensus 381 ---------------~~~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~ 443 (546)
.++.-..++..|+--.++.-|.+. +++..|+..|+.|+....+-. ..++..|++++.+
T Consensus 347 wSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfND- 421 (823)
T KOG2259|consen 347 WSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFND- 421 (823)
T ss_pred cccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhcc-
Confidence 122345577888888899888774 489999999999986433211 1356788999887
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 444 TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 444 ~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
....++..|+.+|..++.. +..++.-++.++.-+.+-++++|+....+|+...
T Consensus 422 --E~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 422 --EIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred --HHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4578999999999888754 2222234567777777777888877777776654
No 134
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.12 Score=57.25 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=41.3
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh-cCCc
Q 009036 434 ECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK-GRAE 508 (546)
Q Consensus 434 ~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~-~~~~ 508 (546)
..+++.|++ .+..++..|+..+..|...+ .++. .++-|++++...++..|...+.-+-.+. ++.+
T Consensus 353 ~tIleCL~D---pD~SIkrralELs~~lvn~~-Nv~~------mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 353 STILECLKD---PDVSIKRRALELSYALVNES-NVRV------MVKELLEFLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred HHHHHHhcC---CcHHHHHHHHHHHHHHhccc-cHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 356666777 46788888888888887654 3333 3456777777777777755554444443 3444
No 135
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.69 E-value=0.00078 Score=70.20 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=43.2
Q ss_pred CCceeCcccccccCCCeecCCCccccHHHHHHHHhc----CCCCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL----GFTPTLVDGTTPDFS 93 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~----~~~~cp~~~~~~~~~ 93 (546)
-.+..|-+|.+.-.||+..+|.|+|||-||..+... .+-+||.|..+++-.
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 366789999999999999999999999999888753 234999998877653
No 136
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.67 E-value=0.0038 Score=42.70 Aligned_cols=39 Identities=41% Similarity=0.547 Sum_probs=35.3
Q ss_pred chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036 342 QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 342 ~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~ 380 (546)
+++..+.+.|+++.|+++|.+++.++++.|+++|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467778889999999999999899999999999999973
No 137
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0019 Score=62.39 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=37.9
Q ss_pred CceeCcccccccCCCeec-CCCccccHHHHHHHHhcC-CCCCCCCCCCCC
Q 009036 44 GEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLG-FTPTLVDGTTPD 91 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~ 91 (546)
.+-.||+|++-=.-|-++ +|||.||.-||..-+... .-+||.|+....
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 445699999999999887 599999999998755433 448999987543
No 138
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.22 Score=55.09 Aligned_cols=272 Identities=14% Similarity=0.051 Sum_probs=170.2
Q ss_pred hHHHHHHhcCCCC-HHHHHHHHHHHHHHhccChhhhHHhh--cCChHHHHHHHHc--cCCHHHHHHHHHHHHHhhcC-Cc
Q 009036 228 QEDYFVQKLKSPQ-VHEVEEALISLRKLTRSREETRVSLC--TPRLLLALRSLII--SRYTNVQVNAVAALVNLSLE-KI 301 (546)
Q Consensus 228 ~i~~lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~l~--~~g~i~~Lv~lL~--s~~~~v~~~A~~~L~nLs~~-~~ 301 (546)
.+..+++...... ...+..++..|..++.+-+.. .+. .+.++-.++.-.. .++..++-.|+.+|.|--.. ..
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGyice~i~pe--vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE--VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH--HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 3444555543333 347788899999988763322 222 2445555555443 35778999999999874321 11
Q ss_pred hHHHHHhcC-ChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 009036 302 NKMLIVRSG-LVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLS 379 (546)
Q Consensus 302 nk~~i~~~g-~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls 379 (546)
|-..=.+.. ++...++.-++.+.+++..|...|..+.... +.-........+..-+.-++++++++...++..=.++|
T Consensus 208 nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstic 287 (859)
T KOG1241|consen 208 NFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTIC 287 (859)
T ss_pred hhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 111111222 4566777778889999999999998775542 33222222334555556677889999888887777676
Q ss_pred cCch-----------------hHHHHHhc--CcHHHHHHHHhCc------h---HHHHHHHHHHHhhCCcccHHHHHhCC
Q 009036 380 LVKS-----------------NRTKLVKL--GSVNALLGMVNSG------H---MTGRVLLILGNLASCSDGRVAVLDSG 431 (546)
Q Consensus 380 ~~~~-----------------n~~~iv~~--Gav~~Lv~lL~~~------~---~~e~al~~L~nLa~~~e~r~~i~~~g 431 (546)
...- +..-+..+ +++|.|+++|... + ....|-.+|..++.+ +...
T Consensus 288 eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~ 360 (859)
T KOG1241|consen 288 EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDD 360 (859)
T ss_pred HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hccc
Confidence 4210 11111111 6778888888641 1 445555555555432 2234
Q ss_pred cHHHHHHHHccC-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 432 GVECLVGMLRKG-TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 432 ~i~~Lv~lL~~~-~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
+++.++..+... ...+-+-++.|+.++..+-.+.+..+..-...++++.++.++.+.+--+|+-+.+.|-.+++.-.
T Consensus 361 Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 361 IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 555665555531 22456778999999998888766555555556789999999999999999999999998887665
No 139
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0011 Score=73.06 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=40.5
Q ss_pred CCCceeCcccccccCC-----CeecCCCccccHHHHHHHHhcCCCCCCCCCC
Q 009036 42 PPGEFLCPVSGSLMAD-----PVVVSSGHTFERACAHVCKTLGFTPTLVDGT 88 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~d-----PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~ 88 (546)
...+-.|+||.|.|.. |=.++|||.|+..|+..|++. ..+||.|+.
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~ 338 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRT 338 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchh
Confidence 3457789999999999 788999999999999999996 558998876
No 140
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.50 E-value=0.0027 Score=50.94 Aligned_cols=49 Identities=18% Similarity=0.141 Sum_probs=37.0
Q ss_pred CCceeCcccccccCC-Ceec-CCCccccHHHHHHHHhcC--CCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMAD-PVVV-SSGHTFERACAHVCKTLG--FTPTLVDGTTPD 91 (546)
Q Consensus 43 p~~~~CpI~~~~m~d-PV~~-~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~ 91 (546)
+-+-.||.|...=.| |+++ .|||.|-..||.+|++.. ...||.|+++..
T Consensus 30 ~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 30 PFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 334456666666555 7666 999999999999999863 458999988643
No 141
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.41 E-value=0.0027 Score=65.06 Aligned_cols=52 Identities=21% Similarity=0.381 Sum_probs=45.3
Q ss_pred eeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036 46 FLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN 98 (546)
Q Consensus 46 ~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 98 (546)
+.|.|++++=++||+- .+||.|+|+-|++++.. +..||+++++++..+|+|-
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~I 53 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVEI 53 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeeec
Confidence 5799999999999997 78999999999999874 4468889999988888874
No 142
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.35 E-value=0.13 Score=57.77 Aligned_cols=166 Identities=17% Similarity=0.164 Sum_probs=94.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHH
Q 009036 236 LKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPI 315 (546)
Q Consensus 236 L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~L 315 (546)
|.+++...+..|++.+-.....++..- -..+-+++...+.|.+++.-.--=|.+.+........+ ++..+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 444555566666665543222222211 12444555555667776665544455555432222111 34555
Q ss_pred HHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHH
Q 009036 316 VDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVN 395 (546)
Q Consensus 316 v~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~ 395 (546)
..=|++.++.+|..|+++|..|-. ++.+ ...++++.+++.++++.+|+.|+.++.++=. -.+....+.|.+.
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~----~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~ 169 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRV----KELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLID 169 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcCh----HHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHH
Confidence 666667777787777777776621 1111 2356677777777777787777777777633 2344455567777
Q ss_pred HHHHHHhCch--HHHHHHHHHHHhhC
Q 009036 396 ALLGMVNSGH--MTGRVLLILGNLAS 419 (546)
Q Consensus 396 ~Lv~lL~~~~--~~e~al~~L~nLa~ 419 (546)
.+..++.+.+ +...|+.+|..+..
T Consensus 170 ~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 170 ILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHhch
Confidence 7777776543 66677777776654
No 143
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.34 E-value=0.26 Score=54.30 Aligned_cols=260 Identities=13% Similarity=0.108 Sum_probs=154.6
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh--hhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCch
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREE--TRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKIN 302 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~n 302 (546)
....+..++..|++.++.++.+|+..+..++.--.. --+.+...|. .|.+-|...++++.-..+.+|..+...- .
T Consensus 797 lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvi-g 873 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVI-G 873 (1172)
T ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhc-c
Confidence 346677888899999999999999999988863110 1112333333 3566777888888765555554433211 0
Q ss_pred HHHHH--hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 009036 303 KMLIV--RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHLS 379 (546)
Q Consensus 303 k~~i~--~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls 379 (546)
..++. -.+.+|.|.-+|++...+++++...++..++..........+ ...--.|+++|+..+.+.+++|..++..++
T Consensus 874 m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 874 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 00111 237899999999999999999999999998875422211111 234457888999888899999998887765
Q ss_pred cCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHH-h-CC---cHHHHHHHHccCCCCCHHHHHHH
Q 009036 380 LVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVL-D-SG---GVECLVGMLRKGTELSESTQESC 454 (546)
Q Consensus 380 ~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~-~-~g---~i~~Lv~lL~~~~~~s~~~~e~A 454 (546)
.. -|--..|.-+|.+-.+++.=..+=. .-..+|+ + .| ++|.|+.--+. ....+|.-.
T Consensus 954 ka---------IGPqdVLatLlnnLkvqeRq~RvcT------tvaIaIVaE~c~pFtVLPalmneYrt---Pe~nVQnGV 1015 (1172)
T KOG0213|consen 954 KA---------IGPQDVLATLLNNLKVQERQNRVCT------TVAIAIVAETCGPFTVLPALMNEYRT---PEANVQNGV 1015 (1172)
T ss_pred Hh---------cCHHHHHHHHHhcchHHHHHhchhh------hhhhhhhhhhcCchhhhHHHHhhccC---chhHHHHhH
Confidence 42 1333445555544333332111100 0011222 2 22 44555444444 334556555
Q ss_pred HHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 455 VSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 455 v~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
+.+|.-+... .+..+..+-. +.+.|...+.+.+.--|.-|..+++.|+=..
T Consensus 1016 Lkalsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1016 LKALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred HHHHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 5555444431 1122222222 4567777788888888999999999987443
No 144
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.33 E-value=0.081 Score=48.06 Aligned_cols=124 Identities=12% Similarity=0.200 Sum_probs=96.1
Q ss_pred HHHHHhcCcHHHHHHHHhCch--------HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036 385 RTKLVKLGSVNALLGMVNSGH--------MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVS 456 (546)
Q Consensus 385 ~~~iv~~Gav~~Lv~lL~~~~--------~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~ 456 (546)
..+++..|++..|++++.++. ....+|.++..|-...---=..++...|..++.++.... .+..+.+.|++
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~-~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSA-MDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcccc-ccchHHHHHHH
Confidence 456788899999999998743 445577777777664321223445567888888887643 36788999999
Q ss_pred HHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcc
Q 009036 457 VLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE 509 (546)
Q Consensus 457 ~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~ 509 (546)
+|-+++..+...-..+.++=-++.|+..++..++.++.+|..++-.|-...++
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999998877677777777789999999999999999999999888866643
No 145
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.32 E-value=0.2 Score=56.62 Aligned_cols=265 Identities=16% Similarity=0.133 Sum_probs=137.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhc
Q 009036 231 YFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRS 309 (546)
Q Consensus 231 ~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~ 309 (546)
.|++++.+++.+.|-=|...|..-...+..+-..=-+..++..|+.+|...+.++|..|+.+|+-|+.. .+.+..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le---- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE---- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----
Confidence 677788888888887777666543322211111111356899999999999999999999999988743 222211
Q ss_pred CChHHHHHHHccCCHHHHHHH-HHHHhhcccccchhhHHhhcCChHHHHHhhcc------CCHHHHHHHHHHHHHhhc-C
Q 009036 310 GLVPPIVDVLMAGSAEAQEHA-CGAIFSLALDDQNKTAIGVLGALPPLLHLLKS------DSERTQHDSALALYHLSL-V 381 (546)
Q Consensus 310 g~l~~Lv~lL~~~~~~~~~~A-a~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~------~~~~~~~~A~~aL~~Ls~-~ 381 (546)
..++.|+.-+-++....+-.+ ..+....+..+..........+.+.+...|.. +...++-.++..|..+-+ .
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 133444444344444444322 22222233222211111223344444444433 222355555555444322 1
Q ss_pred chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 009036 382 KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLY 459 (546)
Q Consensus 382 ~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~ 459 (546)
...-.. ...+....++.-+.... ++.+++.+|..|+..- ++..+. +.+..|++-|... .......--+..|.
T Consensus 165 g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly~--~li~~Ll~~L~~~--~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 165 GTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLYV--ELIEHLLKGLSNR--TQMSATRTYIQCLA 238 (1233)
T ss_pred cccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHHH--HHHHHHHhccCCC--CchHHHHHHHHHHH
Confidence 111111 12234444554454443 8899999999998632 222222 3445555555443 23344444456666
Q ss_pred HHhcCCh-hhHHHHHHCCcHHHHHHHH---hcCCHHHHHHHHHHHHHhhcCC
Q 009036 460 ALSHGGL-RFKGLAAAAGMAEVLMRME---RVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 460 ~L~~~~~-~~~~~~~~~g~v~~L~~ll---~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
.+|.... +...-. ...++.+.... +...++.|+...+.|..+-...
T Consensus 239 ~i~r~ag~r~~~h~--~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rc 288 (1233)
T KOG1824|consen 239 AICRQAGHRFGSHL--DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRC 288 (1233)
T ss_pred HHHHHhcchhhccc--chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhC
Confidence 6665321 111111 12566777776 6667788888877776665433
No 146
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.29 E-value=0.023 Score=47.63 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhh-CCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 009036 407 TGRVLLILGNLA-SCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAA 474 (546)
Q Consensus 407 ~e~al~~L~nLa-~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~ 474 (546)
+...+.+|.||| .++..++.+.+.|+|+.++..-.-. ..+|-.+|+|+.++.+||.++++.+..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-DHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-cccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 556889999999 4778889999999999999886443 257999999999999999999888886654
No 147
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0033 Score=63.90 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=39.4
Q ss_pred eeCcccccccCCC---eecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 46 FLCPVSGSLMADP---VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 46 ~~CpI~~~~m~dP---V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
+.|-||+|-|++= ++|||+|.|=..||..|+-+.++.||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 7999999998753 457999999999999999888778999987543
No 148
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.028 Score=60.91 Aligned_cols=239 Identities=17% Similarity=0.087 Sum_probs=151.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc------chh
Q 009036 271 LLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD------QNK 344 (546)
Q Consensus 271 i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~------~~k 344 (546)
+.-|..+..+.|..++..|+..|+.|+....-- .-.....++.|++....+|..|..+++...... ++-
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 333666677788889999999988876522111 123567788889888999999988877553321 111
Q ss_pred hHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHHhCchHH-HHHHHHHHHh-----
Q 009036 345 TAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK-SNRTKLVKLGSVNALLGMVNSGHMT-GRVLLILGNL----- 417 (546)
Q Consensus 345 ~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~-~n~~~iv~~Gav~~Lv~lL~~~~~~-e~al~~L~nL----- 417 (546)
..=....++..+.+.+.+.+..++..|+.+|..+-... +.-.+..+. .++.-+...... +..-....+.
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK----Klms~lRRkr~ahkrpk~l~s~GewSsG 350 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK----KLMSRLRRKRTAHKRPKALYSSGEWSSG 350 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH----HHhhhhhhhhhcccchHHHHhcCCcccC
Confidence 11112347778888888888888888888888765422 222222221 222212111111 1111222222
Q ss_pred ----h-----CCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC
Q 009036 418 ----A-----SCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG 488 (546)
Q Consensus 418 ----a-----~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~ 488 (546)
+ ..+++-..|+.+|+-.++|.=|.+ .--+++..|+..|+.|+..++.+... .+..|+.|+.+.
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlED---Ef~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE 422 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLED---EFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDE 422 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechH---HHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccH
Confidence 0 023345667888888888888877 33689999999999999876655543 468999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCcccccc-CChHHHHhcCCcc
Q 009036 489 SEHVKEKAKRMLELMKGRAEEEEEG-VDWDELLDSGLVS 526 (546)
Q Consensus 489 s~~~k~~A~~lL~~L~~~~~~~~~~-~~~~~~~~~~~~~ 526 (546)
-..+|.+|...|+.++..-...++. ..+-+.+++..+.
T Consensus 423 ~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~d 461 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVD 461 (823)
T ss_pred HHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHH
Confidence 9999999999999999876655532 2334444444443
No 149
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.18 E-value=0.056 Score=51.07 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhc----------------CcHHHHHHHHhCc--------hHHHHHHHHHHHhhCCc
Q 009036 366 RTQHDSALALYHLSLVKSNRTKLVKL----------------GSVNALLGMVNSG--------HMTGRVLLILGNLASCS 421 (546)
Q Consensus 366 ~~~~~A~~aL~~Ls~~~~n~~~iv~~----------------Gav~~Lv~lL~~~--------~~~e~al~~L~nLa~~~ 421 (546)
.....++.+|.||+...+.+..++.. ..+..|++++..+ +.......+|.||+..+
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 34467788999999888777766544 2677788887652 15677999999999999
Q ss_pred ccHHHHHhC--Cc--HHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH--CCcHHHHHHHHh
Q 009036 422 DGRVAVLDS--GG--VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAA--AGMAEVLMRMER 486 (546)
Q Consensus 422 e~r~~i~~~--g~--i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~--~g~v~~L~~ll~ 486 (546)
+||..+++. +. +..|+..+.. .+..-+.-++++|.|+|.+......++.. .++++.|+.-+.
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft~~---~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFTEH---KSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHhcc---CcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999999963 34 5666666665 46788899999999999877656555543 356666666655
No 150
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=96.16 E-value=0.0048 Score=59.34 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=36.3
Q ss_pred CceeCcccccccCCCeec-CCCccccHHHHHHHHhcC-CCCCCCCC
Q 009036 44 GEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLG-FTPTLVDG 87 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~~~ 87 (546)
-.++|||+......||+- .|||.|+|..|...+... ..-||+-+
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 457899999999999996 999999999999887642 33677643
No 151
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.15 E-value=0.0099 Score=43.84 Aligned_cols=55 Identities=25% Similarity=0.215 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036 324 AEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHL 378 (546)
Q Consensus 324 ~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L 378 (546)
+.+|..|+.+|.+++........-....+++.|+.+|++++..++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999876654433334567899999999999999999999999865
No 152
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=1.5 Score=48.57 Aligned_cols=213 Identities=16% Similarity=0.167 Sum_probs=137.8
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINKM 304 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk~ 304 (546)
...+.++.+|.+..+-++.+|+-.|..+.-.-+ ..|. .+|.|++=|..+|+.++..|+.++..|+. ++.|-.
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 445788999999999999999999887654433 3443 47899999999999999999999999998 577763
Q ss_pred HHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCC-HHHHHHHHHHHH--Hhhc
Q 009036 305 LIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDS-ERTQHDSALALY--HLSL 380 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~-~~~~~~A~~aL~--~Ls~ 380 (546)
. .-|.+.++|... +-=+......+..+|+-.. ..++ ...+++|..++.+.. ..+.-+++.++. +++.
T Consensus 218 ~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplE---PRLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 Q-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE---PRLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred c-----ccHHHHHHHhccCCCeehHHHHHHHhhccccC---chhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 3 457777777644 2222233344444454322 1122 247888888887732 122223333222 3333
Q ss_pred CchhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHH
Q 009036 381 VKSNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSV 457 (546)
Q Consensus 381 ~~~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~ 457 (546)
...+....+.. ++..|-.++.+. +++...+-++..+... +.. +..+. ..+++.|.+ .++.++-.|+..
T Consensus 289 g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~---Vqa~k--dlIlrcL~D---kD~SIRlrALdL 359 (877)
T KOG1059|consen 289 GMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA---VQAHK--DLILRCLDD---KDESIRLRALDL 359 (877)
T ss_pred CCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH---HHHhH--HHHHHHhcc---CCchhHHHHHHH
Confidence 33344444444 677777777664 4888888888777753 222 11222 456777777 567899999999
Q ss_pred HHHHhc
Q 009036 458 LYALSH 463 (546)
Q Consensus 458 L~~L~~ 463 (546)
|..+..
T Consensus 360 l~gmVs 365 (877)
T KOG1059|consen 360 LYGMVS 365 (877)
T ss_pred HHHHhh
Confidence 988875
No 153
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.03 E-value=0.18 Score=45.87 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=90.7
Q ss_pred HHhhcCChHHHHHhhccCC------HHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC----chHHHHHHHHHH
Q 009036 346 AIGVLGALPPLLHLLKSDS------ERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS----GHMTGRVLLILG 415 (546)
Q Consensus 346 ~i~~~g~l~~Lv~lL~~~~------~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~----~~~~e~al~~L~ 415 (546)
.+...+++..|++++.++. .+....++.++.+|-...-.--..++...|...+.++.. .++...|+.+|.
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 3456789999999999875 366677888888887665545556666677777777764 348889999999
Q ss_pred HhhCCcccHHHHHhC-CcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036 416 NLASCSDGRVAVLDS-GGVECLVGMLRKGTELSESTQESCVSVLYALSHG 464 (546)
Q Consensus 416 nLa~~~e~r~~i~~~-g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~ 464 (546)
++..+.......++. =.++.|+..|.. .+++.+.+|+..+-.|...
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~---~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQV---SNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHc---CCHHHHHHHHHHHHHHHhc
Confidence 999888776666654 478999999998 4689999999999888763
No 154
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.99 E-value=0.74 Score=49.56 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=49.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 009036 229 EDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE 299 (546)
Q Consensus 229 i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 299 (546)
.++|-..|++.-..++.++++.+..++.++- -..++ ...+..|-.+|.+.....|-.|+++|-.|+..
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~ 333 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMK 333 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 3455556666668899999999999887651 11111 13577788888999999999999999988864
No 155
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.99 E-value=0.006 Score=60.68 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=42.4
Q ss_pred CCCceeCcccccccCC--Ce-ec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 009036 42 PPGEFLCPVSGSLMAD--PV-VV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIP 97 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~d--PV-~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 97 (546)
-...|.|||++..|.. +. .+ +|||.|+..+|.+- . ....||.|+.++...+++|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccccCCEEE
Confidence 4578999999999954 33 34 99999999999775 2 2446999999998777654
No 156
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.93 E-value=0.62 Score=50.50 Aligned_cols=263 Identities=11% Similarity=0.087 Sum_probs=150.7
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh--hhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC---
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREE--TRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE--- 299 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--- 299 (546)
....+..+++.|++..++++..|+.....|++--.. --..+...|. .|.+-|...++++.-..+.++..+...
T Consensus 602 l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 602 LSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcc
Confidence 356778899999999999999999988887753110 0112222222 345566677888876666666554332
Q ss_pred CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036 300 KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHL 378 (546)
Q Consensus 300 ~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L 378 (546)
...+.. -.|.+|.|.-+|++...++..+...++..++..........+ ...--.|+++|++-+.+.+++|...+..+
T Consensus 680 ~~mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 680 RSMQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cccCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 111111 247999999999999999999999999988876533222222 23445788999999999999999888776
Q ss_pred hcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHH-h-CCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036 379 SLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVL-D-SGGVECLVGMLRKGTELSESTQESCVS 456 (546)
Q Consensus 379 s~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~-~-~g~i~~Lv~lL~~~~~~s~~~~e~Av~ 456 (546)
+..- |--..|.-+|.+-.+++.-..+=..+ ...++ + .|-...|-.+|..-......+|.-.+.
T Consensus 758 s~ai---------GPqdvL~~LlnnLkvqeRq~Rvctsv------aI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLk 822 (975)
T COG5181 758 SRAI---------GPQDVLDILLNNLKVQERQQRVCTSV------AISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLK 822 (975)
T ss_pred Hhhc---------CHHHHHHHHHhcchHHHHHhhhhhhh------hhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHH
Confidence 5421 33333444444333333211111000 01122 2 232222222333322233445554444
Q ss_pred HHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 457 VLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 457 ~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
+++-+... ....+..+-. ..+.|-..+.+.++--|.-|..+++.|.=.+.
T Consensus 823 am~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 823 AMCFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 44433321 1112222221 34566666777788888889999988874443
No 157
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.1 Score=57.70 Aligned_cols=71 Identities=23% Similarity=0.150 Sum_probs=60.7
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE 299 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 299 (546)
+..+..+.+.+++.++.+|..|+-.+.++-.. ........|+++.|..++.+.++.+..+|+.+|..+...
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 45678899999999999999998888777654 456667899999999999999999999999999988764
No 158
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.54 Score=52.41 Aligned_cols=257 Identities=14% Similarity=0.155 Sum_probs=133.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cch------
Q 009036 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KIN------ 302 (546)
Q Consensus 230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~n------ 302 (546)
..+.+-|++++.-++.-|+..|.+++.. +.. ..+.|-+.++|.+.++.++..|+.+...+-.. ++-
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~--Ema-----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~ 182 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSP--EMA-----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI 182 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCH--HHh-----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH
Confidence 3455567888888888999999888753 222 24567788899999999999998887765543 332
Q ss_pred --HHHHHhc--C----ChHHHHHHHccCCH------HHHHHHHHHHhhcccccch----hhHHhhc---CChHHHHHhhc
Q 009036 303 --KMLIVRS--G----LVPPIVDVLMAGSA------EAQEHACGAIFSLALDDQN----KTAIGVL---GALPPLLHLLK 361 (546)
Q Consensus 303 --k~~i~~~--g----~l~~Lv~lL~~~~~------~~~~~Aa~~L~~Ls~~~~~----k~~i~~~---g~l~~Lv~lL~ 361 (546)
+..+.+. | ++..+.+++..+.. .+...-..+|.++....-. -.-|-++ =-+-.|+++|.
T Consensus 183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 2223221 2 23444444443211 1223334445444332110 0000000 01113344455
Q ss_pred cCCHHHHHHHHHHHHHhhcC---chhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHH
Q 009036 362 SDSERTQHDSALALYHLSLV---KSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVG 438 (546)
Q Consensus 362 ~~~~~~~~~A~~aL~~Ls~~---~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~ 438 (546)
.++++....--.+|..++.. ..|....+-...|..+..+..+..+++.|+.+|...-.+.++-...+ ++..|.+
T Consensus 263 q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYv---aLn~L~r 339 (866)
T KOG1062|consen 263 QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYV---ALNMLLR 339 (866)
T ss_pred CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeee---ehhhHHh
Confidence 55555555555566666552 23444444445666666666666677777777766655443222111 3445555
Q ss_pred HHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 439 MLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 439 lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
.+.. +...++.+=..++..|-.-+...+.- +++.+..++.. ..++....++|..|...
T Consensus 340 ~V~~---d~~avqrHr~tIleCL~DpD~SIkrr-----alELs~~lvn~--~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 340 VVQQ---DPTAVQRHRSTILECLKDPDVSIKRR-----ALELSYALVNE--SNVRVMVKELLEFLESS 397 (866)
T ss_pred hhcC---CcHHHHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHHhcc--ccHHHHHHHHHHHHHhc
Confidence 5544 23455555555555443222222222 23444444433 44556666777776665
No 159
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=1 Score=49.69 Aligned_cols=244 Identities=15% Similarity=0.143 Sum_probs=143.1
Q ss_pred HHHHhcCCCC--HHHHHHHHHHHHHHhccChhhhHHhhc-CChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-C-chHHH
Q 009036 231 YFVQKLKSPQ--VHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIISRYTNVQVNAVAALVNLSLE-K-INKML 305 (546)
Q Consensus 231 ~lv~~L~s~~--~~~~~~Al~~L~~La~~~~~~r~~l~~-~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~-~nk~~ 305 (546)
.+-+.|-+++ .-++.+|+-.|..|.+.+++ ++. .+-...++.+|...+-.+.-.+...+..|++. + +.+..
T Consensus 150 DI~KlLvS~~~~~~vkqkaALclL~L~r~spD----l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~ 225 (938)
T KOG1077|consen 150 DIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD----LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTC 225 (938)
T ss_pred hhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc----ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhh
Confidence 3445554443 23455555555556655443 222 24577888899888877777777777777764 2 23322
Q ss_pred HHhcCChHHHHHHHcc-------------CCHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhcc----CCH-
Q 009036 306 IVRSGLVPPIVDVLMA-------------GSAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKS----DSE- 365 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~-------------~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~----~~~- 365 (546)
+-. .+..|..+... ..|=++...+++|.++-..++. +..+. ..++.++...++ .+.
T Consensus 226 ~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq 301 (938)
T KOG1077|consen 226 LPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQ 301 (938)
T ss_pred HHH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchH
Confidence 211 12222222111 2455777888888887443333 33332 345555555542 111
Q ss_pred --HHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHH
Q 009036 366 --RTQHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGML 440 (546)
Q Consensus 366 --~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL 440 (546)
.++...+.-..+|.. .++....+++ ++..|-.+|.+.+ ++..++..++.||++....+++..+ ...++..|
T Consensus 302 ~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sL 377 (938)
T KOG1077|consen 302 HSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSL 377 (938)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHh
Confidence 122222222333433 3344444554 5888999998754 8999999999999998777777766 67788888
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHH
Q 009036 441 RKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEK 495 (546)
Q Consensus 441 ~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~ 495 (546)
+.. .+-.++..|+..|+.+|..+ ..+. ++.-|+..+.+-+..+|+.
T Consensus 378 kte--rDvSirrravDLLY~mcD~~-Nak~------IV~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 378 KTE--RDVSIRRRAVDLLYAMCDVS-NAKQ------IVAELLQYLETADYSIREE 423 (938)
T ss_pred ccc--cchHHHHHHHHHHHHHhchh-hHHH------HHHHHHHHHhhcchHHHHH
Confidence 854 45678999999999999643 2333 2345556666666655543
No 160
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.31 Score=56.41 Aligned_cols=217 Identities=16% Similarity=0.126 Sum_probs=129.0
Q ss_pred cCCHHHHHHHHHHHHHhhcCCchHHHHHhc--CChHHHHHHHccCCHHHHHHHHHHHhhccccc--chhhHHhhcCChHH
Q 009036 280 SRYTNVQVNAVAALVNLSLEKINKMLIVRS--GLVPPIVDVLMAGSAEAQEHACGAIFSLALDD--QNKTAIGVLGALPP 355 (546)
Q Consensus 280 s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~--g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~l~~ 355 (546)
+.+..+|..+..+|..++..+.......+. .+...|...+++.....+..++.+|..|-... +....+ ...|+.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHH
Confidence 457889999999999988775444333221 23344555555556666777777776654332 333333 235555
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcC------cHHHHHHHHhCc---h-HHHHHHHHHHHhhCCcccHH
Q 009036 356 LLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLG------SVNALLGMVNSG---H-MTGRVLLILGNLASCSDGRV 425 (546)
Q Consensus 356 Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~G------av~~Lv~lL~~~---~-~~e~al~~L~nLa~~~e~r~ 425 (546)
++-.++..+...++.|..+|..|+. .....+.| .|...+.+|..+ + ....+.. |..+...-..-.
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFK 817 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHh
Confidence 5555677788999999999999873 11222222 455555555443 2 2222221 222211111112
Q ss_pred HHHhCCcHHHH----HHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 009036 426 AVLDSGGVECL----VGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLE 501 (546)
Q Consensus 426 ~i~~~g~i~~L----v~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~ 501 (546)
.+++.+.+..+ ...|.+ .++++...|++.+..++..-+...-.--.+-+++.++.+.++.+-.+|.+...+|.
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s---~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLAS---NSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 23333333444 334444 46899999999999888754333222222236789999999999999999999998
Q ss_pred HhhcC
Q 009036 502 LMKGR 506 (546)
Q Consensus 502 ~L~~~ 506 (546)
.|.+.
T Consensus 895 kLirk 899 (1176)
T KOG1248|consen 895 KLIRK 899 (1176)
T ss_pred HHHHH
Confidence 88653
No 161
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.81 E-value=0.36 Score=55.20 Aligned_cols=194 Identities=14% Similarity=0.121 Sum_probs=137.8
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHhh-cccccchhhHHhhcCChHHHHHhhcc-C--CHHHHHHHHHHHHHhhc-Cc
Q 009036 308 RSGLVPPIVDVLMAGSAEAQEHACGAIFS-LALDDQNKTAIGVLGALPPLLHLLKS-D--SERTQHDSALALYHLSL-VK 382 (546)
Q Consensus 308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~-Ls~~~~~k~~i~~~g~l~~Lv~lL~~-~--~~~~~~~A~~aL~~Ls~-~~ 382 (546)
.-|++|-++++|++...|+|..-+-+=.. |+.++..+..+...++-.-++..|.. . +++-+..|+-+|..++. +.
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 45899999999999999988655544443 55666667777777777777888876 2 56778888889999887 45
Q ss_pred hhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036 383 SNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL 458 (546)
Q Consensus 383 ~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L 458 (546)
-.++...+.+.+..-++.|.++. ++.=++-+|..|=. .+++|-.-++.++...|..+|.+ ..++++..|+.+|
T Consensus 590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD---~vpEVRaAAVFAL 666 (1387)
T KOG1517|consen 590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSD---PVPEVRAAAVFAL 666 (1387)
T ss_pred hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcC---ccHHHHHHHHHHH
Confidence 56777788899998889998752 44445555665543 45555555678899999999988 4589999999999
Q ss_pred HHHhcC----ChhhHHHH-----------HHCCcHH----HHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 459 YALSHG----GLRFKGLA-----------AAAGMAE----VLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 459 ~~L~~~----~~~~~~~~-----------~~~g~v~----~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
..+-.. .++....+ .-+..+. .|+.+++.+++-++......|..+.
T Consensus 667 gtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 667 GTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 888663 11111111 1122232 6677788999999887777776664
No 162
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.80 E-value=0.043 Score=46.08 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHH--HhcCCHHHHHHHHHHHHHhhcCCcccc
Q 009036 451 QESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRM--ERVGSEHVKEKAKRMLELMKGRAEEEE 511 (546)
Q Consensus 451 ~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~l--l~~~s~~~k~~A~~lL~~L~~~~~~~~ 511 (546)
+...+.+|.+||..+...+..+++.|+++.++.. ....+|-+|+.|..++++|+...++.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ 65 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQ 65 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHH
Confidence 5668899999999999999999999999999997 445589999999999999999887666
No 163
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0065 Score=59.46 Aligned_cols=47 Identities=19% Similarity=0.136 Sum_probs=38.1
Q ss_pred eeCcccccccC--CCe-ecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 46 FLCPVSGSLMA--DPV-VVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 46 ~~CpI~~~~m~--dPV-~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
..|-||+.=|. |-+ ++||.|.|-+.||++|+..-...||+|+..+++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 56999987653 444 579999999999999998666689999877654
No 164
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.69 E-value=0.54 Score=45.49 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-----cCCHHHHHHHHHHHHHhhcCC--chHHHHHhcCChHHH
Q 009036 243 EVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-----SRYTNVQVNAVAALVNLSLEK--INKMLIVRSGLVPPI 315 (546)
Q Consensus 243 ~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-----s~~~~v~~~A~~~L~nLs~~~--~nk~~i~~~g~l~~L 315 (546)
-...|+..|+-++.+ ++.|..+..+.+=-.|-.+|. .+....+-.++.+|..|.+.+ +.-..+...++||..
T Consensus 95 RVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 355677777777765 578888887776555666665 246678889999999998853 344555678999999
Q ss_pred HHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--------cCChHHHH-HhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036 316 VDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--------LGALPPLL-HLLKSDSERTQHDSALALYHLSLVKSNRT 386 (546)
Q Consensus 316 v~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--------~g~l~~Lv-~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~ 386 (546)
+.++..|+...+..|..++..+..++..-..|.+ .-.+..++ ++.+.++.++.++++++..+|+.++..|.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999988887754443322 12333333 33445789999999999999998887665
Q ss_pred HHHh
Q 009036 387 KLVK 390 (546)
Q Consensus 387 ~iv~ 390 (546)
.+..
T Consensus 254 aL~~ 257 (293)
T KOG3036|consen 254 ALRS 257 (293)
T ss_pred HHHh
Confidence 5543
No 165
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.64 E-value=0.02 Score=42.12 Aligned_cols=55 Identities=20% Similarity=0.145 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhc
Q 009036 283 TNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSL 337 (546)
Q Consensus 283 ~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~L 337 (546)
+.++..|+.+|.+++........-....+++.|+.+|++.++.+|..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999887644443334456899999999999999999999999875
No 166
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.01 Score=58.88 Aligned_cols=50 Identities=26% Similarity=0.435 Sum_probs=41.5
Q ss_pred CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
..|+.-.||+|++--.+|-++ -+|..||..||-.+.. ....||+|+.+..
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 456788899999998888777 4599999999999887 5668999877654
No 167
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.61 E-value=0.062 Score=50.76 Aligned_cols=110 Identities=12% Similarity=0.051 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHhhcCCchHHHHHhc----------------CChHHHHHHHccC------CHHHHHHHHHHHhhccc
Q 009036 282 YTNVQVNAVAALVNLSLEKINKMLIVRS----------------GLVPPIVDVLMAG------SAEAQEHACGAIFSLAL 339 (546)
Q Consensus 282 ~~~v~~~A~~~L~nLs~~~~nk~~i~~~----------------g~l~~Lv~lL~~~------~~~~~~~Aa~~L~~Ls~ 339 (546)
+......++++|.||+..+.....+.+. ..+..|+..+..| ...-..+.+.+|.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3344566788888888877766654322 2577788877662 33456788999999999
Q ss_pred ccchhhHHhh--cCC--hHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 009036 340 DDQNKTAIGV--LGA--LPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKL 391 (546)
Q Consensus 340 ~~~~k~~i~~--~g~--l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~ 391 (546)
..+.|..+.+ .+. +..|+.++.+.+..-+.-++.+|.|.|...+....+...
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~ 143 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD 143 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence 9999999976 345 788888888887777778889999999988888888774
No 168
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=1.4 Score=49.12 Aligned_cols=206 Identities=14% Similarity=0.130 Sum_probs=132.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhc
Q 009036 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRS 309 (546)
Q Consensus 230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~ 309 (546)
..|..+|.+.....+.+|.+.|..+...+... ....|.+++-..+.+.+++.-.---|+.-+.+..+-..
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL---- 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL---- 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----
Confidence 67888999998888999998887655444332 23578889999999999987766666655543332211
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh-HHHH
Q 009036 310 GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN-RTKL 388 (546)
Q Consensus 310 g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n-~~~i 388 (546)
=-|..+-+-|++.++.+|..|+++|..+= ..+...=++-++-+...+.++.+|+.|+.||-.|=+-+.+ +.++
T Consensus 108 LSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 108 LSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred eeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 13566777889999999999999998762 2222222223333445566899999999999888654433 3332
Q ss_pred HhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 389 VKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 389 v~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
+..+=.+|.+.+ +.-.|+.+...+|- +. -.++ ++--..|.++|.. .++..|-..+..|..-|+
T Consensus 182 -----~e~I~~LLaD~splVvgsAv~AF~evCP--er-ldLI-HknyrklC~ll~d---vdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 182 -----EEVIKKLLADRSPLVVGSAVMAFEEVCP--ER-LDLI-HKNYRKLCRLLPD---VDEWGQVVLINMLTRYAR 246 (968)
T ss_pred -----HHHHHHHhcCCCCcchhHHHHHHHHhch--hH-HHHh-hHHHHHHHhhccc---hhhhhHHHHHHHHHHHHH
Confidence 334445566654 66677777776653 22 2222 2334566666666 345667777777766665
No 169
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.49 E-value=1 Score=45.94 Aligned_cols=190 Identities=16% Similarity=0.138 Sum_probs=108.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--cCChHHHHHhhccCCHHHHHHHHHHHHHhhcC---chhHHHH
Q 009036 314 PIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--LGALPPLLHLLKSDSERTQHDSALALYHLSLV---KSNRTKL 388 (546)
Q Consensus 314 ~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~---~~n~~~i 388 (546)
..+..|...+.+.|+.++..|..+.........+.. ...+..+.+.++.+..+-+..|+.++.-|+.. ......+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 334445555677777777777766544333333322 34677888888887766666677766666553 3455555
Q ss_pred HhcCcHHHHHHHHhCch----HHHHHHHHHHHhh---CCc-ccHHHHHhCCcHHHHH--HHHccCC-------CCCHHHH
Q 009036 389 VKLGSVNALLGMVNSGH----MTGRVLLILGNLA---SCS-DGRVAVLDSGGVECLV--GMLRKGT-------ELSESTQ 451 (546)
Q Consensus 389 v~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa---~~~-e~r~~i~~~g~i~~Lv--~lL~~~~-------~~s~~~~ 451 (546)
.+. +.+.|..++.++. .+..|+.+|..++ ... +.....+ ..+..+. .++.... ..++.+.
T Consensus 127 ~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 127 FEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 554 7888888888754 3344444444443 221 1122111 1222111 1122211 1124566
Q ss_pred HHHHHHHHHHhcC-Ch-hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 452 ESCVSVLYALSHG-GL-RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 452 e~Av~~L~~L~~~-~~-~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
-.|+....-|... +. .....+.. .++.|..++.+.+..+|..|-+.|-.|-+...
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~--~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEE--ALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 6666665555432 21 23333333 68999999999999999999999999876544
No 170
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=0.92 Score=50.39 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=101.0
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
..++++-..+++++|..+..|+.....+....+..+..=...+++|.++.++..+..-++..+.+.|..++..-. ..+
T Consensus 364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~ 441 (859)
T KOG1241|consen 364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAI 441 (859)
T ss_pred hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhc
Confidence 345566668999999999999999999888766666655567889999999998888888999999998887522 222
Q ss_pred HhcCChHHHHHHHccC---CHHHHHHHHHHHhhccccc-----ch-hhHHhhcCChHHHHHhhc----c--C-CHHHHHH
Q 009036 307 VRSGLVPPIVDVLMAG---SAEAQEHACGAIFSLALDD-----QN-KTAIGVLGALPPLLHLLK----S--D-SERTQHD 370 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~---~~~~~~~Aa~~L~~Ls~~~-----~~-k~~i~~~g~l~~Lv~lL~----~--~-~~~~~~~ 370 (546)
.....++.++..|-.+ .|.+-.++++++.+|+..- .+ ...... ...+.++.-|- . + ...+|..
T Consensus 442 ~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~A 520 (859)
T KOG1241|consen 442 INQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSA 520 (859)
T ss_pred ccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHH
Confidence 2222344444444333 6888899999999997431 11 111111 23334443332 1 1 3357778
Q ss_pred HHHHHHHhhcC
Q 009036 371 SALALYHLSLV 381 (546)
Q Consensus 371 A~~aL~~Ls~~ 381 (546)
|-.+|..|-.+
T Consensus 521 AYeALmElIk~ 531 (859)
T KOG1241|consen 521 AYEALMELIKN 531 (859)
T ss_pred HHHHHHHHHHc
Confidence 88899888663
No 171
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=0.85 Score=50.81 Aligned_cols=260 Identities=15% Similarity=0.140 Sum_probs=148.2
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cc---
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KI--- 301 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~--- 301 (546)
....+++-..|++....+..+|++.+..+...+. +.+.. ++..|-.+|.++...+|-.|.++|..++.. +.
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc
Confidence 3556777788888899999999999998886543 22222 788888899999999999999999988763 21
Q ss_pred --hH--HHHH-hc---CChHHHHHHHccCCHHHHHHHHHHHhhcccc--cchhhHHh-------------hcCChHHHHH
Q 009036 302 --NK--MLIV-RS---GLVPPIVDVLMAGSAEAQEHACGAIFSLALD--DQNKTAIG-------------VLGALPPLLH 358 (546)
Q Consensus 302 --nk--~~i~-~~---g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~-------------~~g~l~~Lv~ 358 (546)
|+ +.++ .. =....+..+|+.|+.+....-..-+.++..+ +++|..+. ..+.+..|..
T Consensus 319 ~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~ 398 (865)
T KOG1078|consen 319 VCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSN 398 (865)
T ss_pred ccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHH
Confidence 11 1111 11 1234555666766544443333333333221 22222111 1223334444
Q ss_pred hhcc-CCHHHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHHH
Q 009036 359 LLKS-DSERTQHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECL 436 (546)
Q Consensus 359 lL~~-~~~~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~L 436 (546)
+|+. +.-+-++....++..+.. .++.|.. +...|.+.+.+......+..+|..|-. ||-........|..+
T Consensus 399 ~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~~i~~rILhlLG~--EgP~a~~Pskyir~i 471 (865)
T KOG1078|consen 399 MLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFTQIAVRILHLLGK--EGPKAPNPSKYIRFI 471 (865)
T ss_pred HHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccchHHHHHHHHHHhc--cCCCCCCcchhhHHH
Confidence 4443 233444555555444433 2222222 344556666665555566666655542 111111112234444
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 437 VGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 437 v~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
.+.+.- .+..++..|+.+|.++..+.+..+. .+.-.|.+.+.+.++.+|+.|...|+.+.+
T Consensus 472 yNRviL---En~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 472 YNRVIL---ENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhhh---hhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 443322 2356788888888888744332222 234466667888899999999999999984
No 172
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.16 E-value=1.1 Score=50.05 Aligned_cols=235 Identities=14% Similarity=0.124 Sum_probs=141.4
Q ss_pred ChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHH-HhhcCCchHHHHHhcCChHHHHHHHccCCH-HHHHHHHHHHh
Q 009036 258 REETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALV-NLSLEKINKMLIVRSGLVPPIVDVLMAGSA-EAQEHACGAIF 335 (546)
Q Consensus 258 ~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~-nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~-~~~~~Aa~~L~ 335 (546)
....|...++.|+...|+.+...........+..+|. .+.. +..+. ...++++...+++... --.-.++.+|.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGERS----YEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 3455667778999999999988777777777777776 2221 11221 2356666666655421 12246677888
Q ss_pred hcccccc-hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH-HHHHhc-CcHHHHHHHHhCch--HHHHH
Q 009036 336 SLALDDQ-NKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR-TKLVKL-GSVNALLGMVNSGH--MTGRV 410 (546)
Q Consensus 336 ~Ls~~~~-~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~-~~iv~~-Gav~~Lv~lL~~~~--~~e~a 410 (546)
||+..++ .|..|...-+++.+-.++-.+++..+..++..+.||...+..- ..+++. ...+.....+.... ..-.+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 8887764 4666776666666666677788999999999999998866543 334443 34444444444322 33344
Q ss_pred HHHHHHhhCCcccHHH-HHh-CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC
Q 009036 411 LLILGNLASCSDGRVA-VLD-SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG 488 (546)
Q Consensus 411 l~~L~nLa~~~e~r~~-i~~-~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~ 488 (546)
.+++..+....++.-. +.+ ......++.++.+ .+..+|...+.+..++.....+....+.+...+..+..+....
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~---~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~ 724 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQD---EDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLN 724 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcC---chhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 4555544443333222 333 4566777788877 4578888888888887665545555444444555555554333
Q ss_pred CHHHHHHHHHHH
Q 009036 489 SEHVKEKAKRML 500 (546)
Q Consensus 489 s~~~k~~A~~lL 500 (546)
-...++.|...|
T Consensus 725 ~a~~~~~~~~~l 736 (748)
T KOG4151|consen 725 RAPKREDAAPCL 736 (748)
T ss_pred hhhhhhhhhhHH
Confidence 333344444433
No 173
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.12 E-value=0.38 Score=51.46 Aligned_cols=158 Identities=15% Similarity=0.209 Sum_probs=112.0
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch------HHHHHHHHHHHhhCCcccHHH
Q 009036 353 LPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH------MTGRVLLILGNLASCSDGRVA 426 (546)
Q Consensus 353 l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~------~~e~al~~L~nLa~~~e~r~~ 426 (546)
...+.+++.+++...+..|+.-|..|+........++....+..|..++.++. +...++.++..|-...--.=.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 34566778888888888999999999999999999999999999999998865 233344444443322110000
Q ss_pred HHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 427 VLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 427 i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
.+...+|...+.+..-. ..+..+-..|+.+|-++..++....+.+.++--+..|+..++..+.++..+|..++..|...
T Consensus 165 ~~~~~fV~~~a~~V~~~-~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAK-REDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred ecccHHHHHHHHHHhhh-hhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 11222344444443211 01234568899999888887777778888888899999999999999999999999988776
Q ss_pred Ccccc
Q 009036 507 AEEEE 511 (546)
Q Consensus 507 ~~~~~ 511 (546)
.+++.
T Consensus 244 a~~~~ 248 (713)
T KOG2999|consen 244 APDDK 248 (713)
T ss_pred CChHH
Confidence 65543
No 174
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.09 E-value=0.014 Score=60.23 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=35.8
Q ss_pred eeCcccccccCCCe----ecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 46 FLCPVSGSLMADPV----VVSSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 46 ~~CpI~~~~m~dPV----~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
-.||+|++=|-+-| ++.|-|+|--.|+.+| +..+||+|+....
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w---~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW---WDSSCPVCRYCQS 222 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhc---ccCcChhhhhhcC
Confidence 37999999998887 4699999999999999 4557888876543
No 175
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.06 E-value=0.26 Score=55.47 Aligned_cols=141 Identities=14% Similarity=0.138 Sum_probs=103.9
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
..++.+++...+.+.+.++-.-..|...++..++- ..+ +++.+.+=+.++++.+|..|++.+..|-.. .+
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~-~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~~-----el 124 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL-ALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRVK-----EL 124 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH-HHH----HHHHHHhhccCCCHHHHHHHHHHHHhcChH-----HH
Confidence 34566677666667776666666666677665521 111 367777788899999999999988865321 11
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~ 380 (546)
. ..+++++.+.+.++++.+|..|+-++..+-.. .+..+.+.|.+..+..++.+.++.++.+|+.+|..+..
T Consensus 125 ~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 125 L-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred H-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 1 23688899999999999999999999988533 24445667888888899999999999999999998854
No 176
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.02 Score=54.52 Aligned_cols=53 Identities=17% Similarity=0.327 Sum_probs=44.1
Q ss_pred CceeCcccccccCCCe----ecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 009036 44 GEFLCPVSGSLMADPV----VVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIP 97 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV----~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 97 (546)
..|.||+|.+.+.+-+ .-+|||.|+..|.++.+. +..-||+|..++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence 5689999999988753 349999999999999876 3347888999999888877
No 177
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.86 E-value=0.069 Score=46.05 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=60.8
Q ss_pred chhHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHh
Q 009036 226 NEQEDYFVQKL-KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNL 296 (546)
Q Consensus 226 ~~~i~~lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nL 296 (546)
-..+..|++.| ++.++....-|+..|..+.+..+..|..+.+.|+-..++.++.++|++++.+|+.++..|
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45678888888 555777788899999999999999999998999999999999999999999999988765
No 178
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.016 Score=59.18 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=50.8
Q ss_pred eeCcccccccCCC-----eecCCCccccHHHHHHHHhcCC-CCCCCCCCCCCCCCCcccHHHHHHH---HHHHHHc
Q 009036 46 FLCPVSGSLMADP-----VVVSSGHTFERACAHVCKTLGF-TPTLVDGTTPDFSTVIPNLALKSTI---LNWCHKQ 112 (546)
Q Consensus 46 ~~CpI~~~~m~dP-----V~~~~G~ty~r~~i~~~~~~~~-~~cp~~~~~~~~~~l~pn~~l~~~i---~~~~~~~ 112 (546)
-.||||++-..-| |++.|||-|-..||++|+-+.. .-||.|.-.-....++|-+++|... +.||...
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~dt~~~~rle 80 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAMDTENEQRLE 80 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4699999988877 5679999999999999995322 2688887666667888888877654 4555443
No 179
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.77 E-value=1 Score=45.67 Aligned_cols=188 Identities=20% Similarity=0.134 Sum_probs=118.2
Q ss_pred ChHHHHH-HHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch--hh
Q 009036 269 RLLLALR-SLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN--KT 345 (546)
Q Consensus 269 g~i~~Lv-~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~ 345 (546)
+.+.-|+ ..+.+.++.+++.|+.+|+-.+.-+.. ++ ...++.+...+..++.+++..|+.+|+-+...... -.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 4444444 677889999999999999988774431 11 13577888888888999999999999987554321 11
Q ss_pred -------HHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch-----HHHHHHHH
Q 009036 346 -------AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH-----MTGRVLLI 413 (546)
Q Consensus 346 -------~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~-----~~e~al~~ 413 (546)
.......+..+.+.|.+.+++++..|+..++.|-..+.... ...++..|+-+--++. --.+++..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 11224567788888888899999999999999876543322 1234445554444432 22334433
Q ss_pred -HHHhhCCcccHHHHHhCCcHHHHHHHHccCCCC-CHH---HHHHHHHHHHHHhc
Q 009036 414 -LGNLASCSDGRVAVLDSGGVECLVGMLRKGTEL-SES---TQESCVSVLYALSH 463 (546)
Q Consensus 414 -L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~-s~~---~~e~Av~~L~~L~~ 463 (546)
+-..|......+..+....++.+-.+....... ++. .-.+.+..+..++.
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~ 233 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD 233 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence 445566555556666677777777766653210 111 12355566666654
No 180
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.77 E-value=0.2 Score=54.16 Aligned_cols=227 Identities=11% Similarity=0.106 Sum_probs=126.4
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhc---CCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhH
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSL---EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTA 346 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~---~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~ 346 (546)
.+..++.+|++..+.+++.|+.....|+. ....-+.+...|.| |-+-|....+++.-..+.+++.+......+..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 45556668888999999999877766654 22222233333322 44455566788877777777766544332211
Q ss_pred H-hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhc-CcHHHHHHHHhC--chHHHHHHHHHHHhhCCcc
Q 009036 347 I-GVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKL-GSVNALLGMVNS--GHMTGRVLLILGNLASCSD 422 (546)
Q Consensus 347 i-~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~-Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e 422 (546)
- -..|.+|.|..+|++..+++..+.+..+..+|.......-.-+. ..--.|+++|.+ ++++..|...+..++.--
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai- 761 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI- 761 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc-
Confidence 1 12589999999999999999999988888888754432111121 233446666665 348888888887776421
Q ss_pred cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC---------hhhHHHHHHCCcHHHHHHHHhcCCHHHH
Q 009036 423 GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG---------LRFKGLAAAAGMAEVLMRMERVGSEHVK 493 (546)
Q Consensus 423 ~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~---------~~~~~~~~~~g~v~~L~~ll~~~s~~~k 493 (546)
.-.+++..|++-|+..+.........|+++....|.-- -..-....+.|+++.+..+.+.-....+
T Consensus 762 -----GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~ 836 (975)
T COG5181 762 -----GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL 836 (975)
T ss_pred -----CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 11223334444343311001112234455555544311 1112234456666666666555444445
Q ss_pred HHHHHHHHHhh
Q 009036 494 EKAKRMLELMK 504 (546)
Q Consensus 494 ~~A~~lL~~L~ 504 (546)
...-.++-+|.
T Consensus 837 dYvy~itPlle 847 (975)
T COG5181 837 DYVYSITPLLE 847 (975)
T ss_pred HHHHHhhHHHH
Confidence 55555444444
No 181
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.77 E-value=0.26 Score=54.27 Aligned_cols=145 Identities=14% Similarity=0.213 Sum_probs=99.4
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH---HHHhcCcHHHHHHHHhC--chHHHHHHHHHHHhhCCcccHHHH
Q 009036 353 LPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT---KLVKLGSVNALLGMVNS--GHMTGRVLLILGNLASCSDGRVAV 427 (546)
Q Consensus 353 l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~---~iv~~Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e~r~~i 427 (546)
+..++..|++.++.++..|+.++..|+..-.+|. .|...|.| |.+.|.. +++.-..+++|..++..-. -..+
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvig-m~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIG-MTKM 877 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcc-cccc
Confidence 4456677888899999999999998876544442 33333544 6677754 3355555555555553211 1111
Q ss_pred H--hCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChh---hHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009036 428 L--DSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLR---FKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLEL 502 (546)
Q Consensus 428 ~--~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~---~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~ 502 (546)
. -.+.+|.|.-+|++ ...+++++++..+..+|..+++ .++-++ +---|++++...+..+|+.|...+-.
T Consensus 878 ~pPi~dllPrltPILkn---rheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKN---RHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGY 951 (1172)
T ss_pred CCChhhhcccchHhhhh---hHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 1 14688999999999 4589999999999999985432 333332 23467888999999999999999988
Q ss_pred hhcC
Q 009036 503 MKGR 506 (546)
Q Consensus 503 L~~~ 506 (546)
+++.
T Consensus 952 Iaka 955 (1172)
T KOG0213|consen 952 IAKA 955 (1172)
T ss_pred HHHh
Confidence 8863
No 182
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.74 E-value=2.1 Score=41.58 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=99.2
Q ss_pred HHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHh
Q 009036 287 VNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG-----SAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHL 359 (546)
Q Consensus 287 ~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~l 359 (546)
-+|+..|--++.+++.|..+.++.+---|-.+|..+ ..-+|..+.+++..|...++. -..+...+.++..++.
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 467777778889999999999886544444455432 356889999999999877654 3333568999999999
Q ss_pred hccCCHHHHHHHHHHHHHhhcCchh----HHHHHhcCcH----HHHHHHH-hCch--HHHHHHHHHHHhhCCcccHHHHH
Q 009036 360 LKSDSERTQHDSALALYHLSLVKSN----RTKLVKLGSV----NALLGMV-NSGH--MTGRVLLILGNLASCSDGRVAVL 428 (546)
Q Consensus 360 L~~~~~~~~~~A~~aL~~Ls~~~~n----~~~iv~~Gav----~~Lv~lL-~~~~--~~e~al~~L~nLa~~~e~r~~i~ 428 (546)
+..++...+..|..++-.+-.++.. |+..-+.-+| ..++.-+ ..++ +...++.+..+|+.++..|.++.
T Consensus 177 me~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~ 256 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALR 256 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999998888888777766554432 2222121222 2222222 2233 77889999999999998888876
Q ss_pred h
Q 009036 429 D 429 (546)
Q Consensus 429 ~ 429 (546)
.
T Consensus 257 ~ 257 (293)
T KOG3036|consen 257 S 257 (293)
T ss_pred h
Confidence 4
No 183
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.61 E-value=2 Score=43.29 Aligned_cols=218 Identities=14% Similarity=0.127 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhhcCCchHHHHHhc-CChHHHH
Q 009036 240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS--RYTNVQVNAVAALVNLSLEKINKMLIVRS-GLVPPIV 316 (546)
Q Consensus 240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~nk~~i~~~-g~l~~Lv 316 (546)
+.-.+.-|+..|.++....+.......+...-..++..++. ++.++|-+.+-++..|..++.....|-+. ..+..|+
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 44567778888888877543333333456566667777765 46788999999988888876665444332 4677777
Q ss_pred HHHccC-CHHHHHHHHHHHhhcccccchhhHHhh---cCChHHHHHhhccC---CHHHHHHHHH----------------
Q 009036 317 DVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGV---LGALPPLLHLLKSD---SERTQHDSAL---------------- 373 (546)
Q Consensus 317 ~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~---~g~l~~Lv~lL~~~---~~~~~~~A~~---------------- 373 (546)
.+.+.. ...+-.-.++++.++.. ...|..|.. .|-+.+-+++|... +.+.+...-.
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 777765 56677778888888865 223344433 34444555555432 3333221110
Q ss_pred -HHHHh-----h---------cCchhHHHHHhc--CcHHHHHHHHhCch----HHHHHHHHHHHhhCCcccHHHHHhCCc
Q 009036 374 -ALYHL-----S---------LVKSNRTKLVKL--GSVNALLGMVNSGH----MTGRVLLILGNLASCSDGRVAVLDSGG 432 (546)
Q Consensus 374 -aL~~L-----s---------~~~~n~~~iv~~--Gav~~Lv~lL~~~~----~~e~al~~L~nLa~~~e~r~~i~~~g~ 432 (546)
-+..| + .+..|..++.+. ..++.|.+++.... ++-.+-.+...+-..||++..+...|+
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~ 400 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV 400 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence 11111 1 123466666665 67888899887632 233333333333457899999999999
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 009036 433 VECLVGMLRKGTELSESTQESCVSVLYAL 461 (546)
Q Consensus 433 i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L 461 (546)
-..+++++.+ ++++++-.|+.++..+
T Consensus 401 k~~im~L~nh---~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 401 KEIIMNLINH---DDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHhcC---CCchhhHHHHHHHHHH
Confidence 9999999998 5688999999887654
No 184
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.57 E-value=1.6 Score=42.78 Aligned_cols=232 Identities=19% Similarity=0.205 Sum_probs=121.4
Q ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 009036 230 DYFVQKL--KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV 307 (546)
Q Consensus 230 ~~lv~~L--~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~ 307 (546)
+.+.+.| ++.....+-+|+..|+++... +.+..+.+...+++.....+.+-.|..+ .
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~----------~ 64 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQM----------Q 64 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhh----------c
Confidence 3444444 333455666777777766543 2244444444333333333333333332 2
Q ss_pred hcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch--
Q 009036 308 RSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS-- 383 (546)
Q Consensus 308 ~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~-- 383 (546)
....++.|+.+|... .+-+|..|+.+|..+. + ...++.|-+..++....++..+..||..+-..+.
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 345677788777654 4566777777777663 2 2233333333333334444444444444421100
Q ss_pred ----------hHHHH-HhcCcHHHHHHHHhCch----HHHHHHHHHHHhhCC------------cc--cHHH----HH--
Q 009036 384 ----------NRTKL-VKLGSVNALLGMVNSGH----MTGRVLLILGNLASC------------SD--GRVA----VL-- 428 (546)
Q Consensus 384 ----------n~~~i-v~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa~~------------~e--~r~~----i~-- 428 (546)
+-.+. ...+-|..|-..|.+.. -+..|+-.|.|+-.. +. -|.. +.
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl 214 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQL 214 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhc
Confidence 00000 11122444444444322 233455555544210 00 0111 11
Q ss_pred -hCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 429 -DSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 429 -~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
..-.|+.|.+.|.... ..+-++..|+.+|..++... +++.|.+.+.+..+-+++.+.-.|..+-
T Consensus 215 ~s~~ai~~L~k~L~d~~-E~pMVRhEaAeALGaIa~e~-----------~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 215 QSPAAIPSLIKVLLDET-EHPMVRHEAAEALGAIADED-----------CVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred cchhhhHHHHHHHHhhh-cchHHHHHHHHHHHhhcCHH-----------HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 1236888888887753 46788889999998776432 6788889999988888888888887664
No 185
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.47 E-value=4.5 Score=46.49 Aligned_cols=214 Identities=14% Similarity=0.088 Sum_probs=124.2
Q ss_pred chhHHHHHHhcCCC-----CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc----cCC----HHHHHHHHHH
Q 009036 226 NEQEDYFVQKLKSP-----QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII----SRY----TNVQVNAVAA 292 (546)
Q Consensus 226 ~~~i~~lv~~L~s~-----~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~----s~~----~~v~~~A~~~ 292 (546)
.++++.++..|.+. ..+.-...++.|+..++- ..||+.+.+.|+++.|+..|. .+. ..+-+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 46677777777432 222233345555555554 789999999999999998774 333 5666666666
Q ss_pred HHHhhcCCchHHH-H----Hhc--------CChHHHHHHHccC----CHHHHHHHHHHHhhcccccchhhHHhhcCChHH
Q 009036 293 LVNLSLEKINKML-I----VRS--------GLVPPIVDVLMAG----SAEAQEHACGAIFSLALDDQNKTAIGVLGALPP 355 (546)
Q Consensus 293 L~nLs~~~~nk~~-i----~~~--------g~l~~Lv~lL~~~----~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~ 355 (546)
+..|..+...... . ... .-+..|+..+.+. ++.+....+++|-+|+..++.+...... -+.+
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~F~p 273 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-HFKP 273 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-HHHH
Confidence 6554432111000 0 011 1256666666543 6888899999999998876443222110 1122
Q ss_pred HHHhhccC---CHHHHHHHHHHHHHhhcC-------chhHHHHHhcCcHHHHHHHHhCc----------h--------HH
Q 009036 356 LLHLLKSD---SERTQHDSALALYHLSLV-------KSNRTKLVKLGSVNALLGMVNSG----------H--------MT 407 (546)
Q Consensus 356 Lv~lL~~~---~~~~~~~A~~aL~~Ls~~-------~~n~~~iv~~Gav~~Lv~lL~~~----------~--------~~ 407 (546)
.+++=+-+ ..+- ...+..++.++.. ..-|..+++.|++...+++|... + ..
T Consensus 274 ~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 274 YLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred hcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 11211111 1111 2224455555431 23488999999999999988641 1 23
Q ss_pred HHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccC
Q 009036 408 GRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG 443 (546)
Q Consensus 408 e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~ 443 (546)
..++.+|.-||.....-+.++..++| .++..|...
T Consensus 353 p~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqv 387 (802)
T PF13764_consen 353 PYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQV 387 (802)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcC
Confidence 45888888888877666666666666 666666654
No 186
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.37 E-value=0.15 Score=42.56 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=51.4
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036 310 GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHL 378 (546)
Q Consensus 310 g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L 378 (546)
..+++++..+.+.+..+|.+|+.+|.+++........-.-...+..|.+++.+.++.+ +.++..|-+|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~V-r~~a~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENV-RSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHH
Confidence 4789999999999999999999999999865433222222567888888888888887 4555666655
No 187
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=94.36 E-value=0.14 Score=49.45 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhhCCcccHHHHHhCC-------cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhh-HHHHHHCCc
Q 009036 406 MTGRVLLILGNLASCSDGRVAVLDSG-------GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRF-KGLAAAAGM 477 (546)
Q Consensus 406 ~~e~al~~L~nLa~~~e~r~~i~~~g-------~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~-~~~~~~~g~ 477 (546)
.+..|+.+|+.||..+.|.+.++.++ .+..|+++|... .+...+|.|+.+|.+||.++... +.++.+.+.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~--e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMR--EDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccc--cchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 68889999999999888888888765 334444445443 56889999999999999976654 467889999
Q ss_pred HHHHHHHHhcCCHHHHH
Q 009036 478 AEVLMRMERVGSEHVKE 494 (546)
Q Consensus 478 v~~L~~ll~~~s~~~k~ 494 (546)
+..|+.++......+..
T Consensus 218 i~~Li~FiE~a~~~~~~ 234 (257)
T PF12031_consen 218 ISHLIAFIEDAEQNAHQ 234 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999877555443
No 188
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.037 Score=55.73 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=38.9
Q ss_pred CCceeCcccccccCCC-------------eecCCCccccHHHHHHHHhcCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMADP-------------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTP 90 (546)
Q Consensus 43 p~~~~CpI~~~~m~dP-------------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 90 (546)
-.|-.|-||++-|-.| =-++|||.+--.|+..|.+. ..+||.|+.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 3677899999885444 57999999999999999984 45899999874
No 189
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.27 E-value=0.93 Score=51.89 Aligned_cols=263 Identities=16% Similarity=0.170 Sum_probs=159.3
Q ss_pred HHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC-----
Q 009036 248 LISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG----- 322 (546)
Q Consensus 248 l~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~----- 322 (546)
-..|..+.+.+.+|...+.++.++..++.++-+ .+-+...+.++..|...+..+ +....+-.++..|++|
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence 356777888899999999998888887777733 333444455555544432211 1122355677777764
Q ss_pred ---CH----HHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhcc----------CCHHHHHHHHHHHHH-----hh
Q 009036 323 ---SA----EAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKS----------DSERTQHDSALALYH-----LS 379 (546)
Q Consensus 323 ---~~----~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~----------~~~~~~~~A~~aL~~-----Ls 379 (546)
.. .+....+.+|+.....+ ..+..+++.+++..|...|.. ++.-+-..-...|+. +|
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 11 23334456666655443 345666778888887766642 122222222333332 24
Q ss_pred cCchhHHHHHhcCcHHHHHHHHhCc--------------------------hHH--HHHHHHHHHhhC------Cc----
Q 009036 380 LVKSNRTKLVKLGSVNALLGMVNSG--------------------------HMT--GRVLLILGNLAS------CS---- 421 (546)
Q Consensus 380 ~~~~n~~~iv~~Gav~~Lv~lL~~~--------------------------~~~--e~al~~L~nLa~------~~---- 421 (546)
.+..|+.++...=....+..+|... .+. ..|+..+..+-. .+
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 4566666554433333333333221 111 112223333222 11
Q ss_pred -ccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHH---hcCCHHHHHHHH
Q 009036 422 -DGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRME---RVGSEHVKEKAK 497 (546)
Q Consensus 422 -e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll---~~~s~~~k~~A~ 497 (546)
..++.|...|++..|++.+... .++.+-.-+..|-.+++.++.........|+++.|++++ .+|+...-..|.
T Consensus 898 npdk~~iynagavRvlirslLln---ypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshal 974 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLN---YPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHAL 974 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhh---ChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccH
Confidence 1267788899999999987763 478888888888888888877888889999999999874 477778888899
Q ss_pred HHHHHhhcCCcccc-ccCChHH
Q 009036 498 RMLELMKGRAEEEE-EGVDWDE 518 (546)
Q Consensus 498 ~lL~~L~~~~~~~~-~~~~~~~ 518 (546)
.++..|+-..-... ...-|.-
T Consensus 975 kIvemLgayrlspselsMlwry 996 (2799)
T KOG1788|consen 975 KIVEMLGAYRLSPSELSMLWRY 996 (2799)
T ss_pred HHHHHHhhccCCcHHHHHHHHH
Confidence 99999987776653 4445643
No 190
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.24 E-value=1.2 Score=47.74 Aligned_cols=149 Identities=21% Similarity=0.166 Sum_probs=106.4
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCH----HHHHHHHHHHHHhhcCchhHHH
Q 009036 312 VPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSE----RTQHDSALALYHLSLVKSNRTK 387 (546)
Q Consensus 312 l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~----~~~~~A~~aL~~Ls~~~~n~~~ 387 (546)
...+.+++.+++...+..|..-|.+|+.+......+....++..|..++.++.. +.....+.++..|-...-.--.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 456778899999999988999999999998888888888899999999998643 4555555665555332211112
Q ss_pred HHhcCcHHHHHHHHhC----chHHHHHHHHHHHhhCCcc-cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 388 LVKLGSVNALLGMVNS----GHMTGRVLLILGNLASCSD-GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 388 iv~~Gav~~Lv~lL~~----~~~~e~al~~L~nLa~~~e-~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
.+....|...+.+... .++-..|+.+|.++..+.. -+..+.+.--+..|+..|.. .+...+..|++.|-.+.
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~---~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV---SNQRIQTCAIALLNALF 241 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh---cchHHHHHHHHHHHHHH
Confidence 2222334444444422 2377889999999998776 45555677789999999988 45777778888887775
Q ss_pred c
Q 009036 463 H 463 (546)
Q Consensus 463 ~ 463 (546)
.
T Consensus 242 ~ 242 (713)
T KOG2999|consen 242 R 242 (713)
T ss_pred h
Confidence 5
No 191
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.026 Score=60.61 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=45.3
Q ss_pred CCCceeCccccccc----CCCeecCCCccccHHHHHHHHhcCCCCCCCCCCC--CCCCCCcccHHHHHHHHH
Q 009036 42 PPGEFLCPVSGSLM----ADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTT--PDFSTVIPNLALKSTILN 107 (546)
Q Consensus 42 ~p~~~~CpI~~~~m----~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~--~~~~~l~pn~~l~~~i~~ 107 (546)
.-+-++|+||...| ..||.+-||||.|+.|.+.-.+ ..|||+...-. ....+..-|++|-+.+..
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn-~scp~~~De~~~~~~~~e~p~n~alL~~~~d 78 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN-ASCPTKRDEDSSLMQLKEEPRNYALLRREHD 78 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh-ccCCCCccccchhcChhhcchhHHHHHhhcc
Confidence 34567899997776 5899999999999999988544 45566543221 234456677877666543
No 192
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=6 Score=43.92 Aligned_cols=222 Identities=13% Similarity=0.114 Sum_probs=123.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhhHHhh
Q 009036 271 LLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGV 349 (546)
Q Consensus 271 i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~ 349 (546)
+..|-.+|.+....++--|+..+..|+........+... .+.++..|+ ..+..+|..|+.+|..++...+.|..+
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV-- 406 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIV-- 406 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHH--
Confidence 555555666666666666666666666654444444333 777888888 558999999999999998765555433
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHHHhhc-C-------c-------hhHHHHHhcCcHHHHHHHHhC-chHHHHHHHH
Q 009036 350 LGALPPLLHLLKSDSERTQHDSALALYHLSL-V-------K-------SNRTKLVKLGSVNALLGMVNS-GHMTGRVLLI 413 (546)
Q Consensus 350 ~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~-------~-------~n~~~iv~~Gav~~Lv~lL~~-~~~~e~al~~ 413 (546)
..|++.|...+...+++.+.=..-|+. + - ......++.+++..++++..+ ++++..|+..
T Consensus 407 ----~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~ 482 (938)
T KOG1077|consen 407 ----AELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKR 482 (938)
T ss_pred ----HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHH
Confidence 345666665555554443322222211 0 0 012244566777888887765 4578877777
Q ss_pred HHHhhCCcccHHHHHhCC--cHHHHHHHHccCCC----------------CCHHHHHHHHHHHHHHhcCChhhHHHHHHC
Q 009036 414 LGNLASCSDGRVAVLDSG--GVECLVGMLRKGTE----------------LSESTQESCVSVLYALSHGGLRFKGLAAAA 475 (546)
Q Consensus 414 L~nLa~~~e~r~~i~~~g--~i~~Lv~lL~~~~~----------------~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~ 475 (546)
+...-..+...+.++..| .+...-.++..... .++..+-.-+.++..++...++.+.-+
T Consensus 483 ~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PEi~~~v--- 559 (938)
T KOG1077|consen 483 LFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPEIKSNV--- 559 (938)
T ss_pred HHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChhhhHHH---
Confidence 666555555666666543 12222333322110 233344444444455554333333321
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 476 GMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 476 g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
...+..-...-+.+++..|.+-|....-
T Consensus 560 --~~vFq~~~n~~D~ElQqRa~EYLql~k~ 587 (938)
T KOG1077|consen 560 --QKVFQLYSNLIDVELQQRAVEYLQLSKL 587 (938)
T ss_pred --HHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 2233333334578888888887776543
No 193
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.13 E-value=2.6 Score=41.50 Aligned_cols=190 Identities=16% Similarity=0.130 Sum_probs=120.2
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHH-------ccCC--H---HHHHHHHHHHHHhhcCCchHHHH
Q 009036 240 QVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLI-------ISRY--T---NVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 240 ~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL-------~s~~--~---~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
+++.++.|+..|..--...+..-..+. ..|.+..|+.=+ ..+. . .-.-+|+..|--++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 567788887777654443333333344 478777776522 2221 2 12234566667788899999999
Q ss_pred HhcCChHHHHHHHccC-----CHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 009036 307 VRSGLVPPIVDVLMAG-----SAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLS 379 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls 379 (546)
.++...--|.-+|+.. -..+|....+++..|...++. -..+...+.+|..++.+..++.-.|..|...+..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9988765666666543 245788899999999875533 334456789999999999998888888887777765
Q ss_pred cCchh-------HHHHHhc-CcHHHHHHHH-hCc--hHHHHHHHHHHHhhCCcccHHHHHh
Q 009036 380 LVKSN-------RTKLVKL-GSVNALLGMV-NSG--HMTGRVLLILGNLASCSDGRVAVLD 429 (546)
Q Consensus 380 ~~~~n-------~~~iv~~-Gav~~Lv~lL-~~~--~~~e~al~~L~nLa~~~e~r~~i~~ 429 (546)
.++.. .+++... .++..++.-+ .++ .+-+..+.+-..|+.++.+|.++.+
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 54432 1222211 1333334333 233 3778899999999999999888774
No 194
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.12 E-value=1.9 Score=49.13 Aligned_cols=224 Identities=14% Similarity=0.099 Sum_probs=122.2
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHH-HH---HHHHhhcCCch
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNA-VA---ALVNLSLEKIN 302 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A-~~---~L~nLs~~~~n 302 (546)
..+..+++.|...+.++|-.|++.|.-++..-.+.+-. -.++.|..-+-++....+.-+ +. .+.|+.- .
T Consensus 47 kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P---~ 119 (1233)
T KOG1824|consen 47 KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP---S 119 (1233)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC---c
Confidence 56788999999999999999999999888543332211 123333333223333333222 22 2334432 1
Q ss_pred HHHHHhcCChHHHHHHHccC------CHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHH
Q 009036 303 KMLIVRSGLVPPIVDVLMAG------SAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALAL 375 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~------~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL 375 (546)
........+++.+...|... ...++-.++.+|..+-.. ...-.- ...+.+..++.-|.+....+++.|+.+|
T Consensus 120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITAL 198 (1233)
T ss_pred cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 11111223444444444322 334666666666543221 111000 2345566666667777778999999999
Q ss_pred HHhhcCchhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHH
Q 009036 376 YHLSLVKSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSEST 450 (546)
Q Consensus 376 ~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~ 450 (546)
.+|+..-. ...-.+++..|++=|.... ...--+.+|..+|..... .+.. ...++.+.++....+..+++.
T Consensus 199 ~~la~~~~---~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~--r~~~h~~~ivp~v~~y~~~~e~~dDEL 273 (1233)
T KOG1824|consen 199 GHLASSCN---RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH--RFGSHLDKIVPLVADYCNKIEEDDDEL 273 (1233)
T ss_pred HHHHHhcC---HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc--hhhcccchhhHHHHHHhcccccCcHHH
Confidence 99987432 1122345666666665432 222233444444433222 2332 347788888884433357899
Q ss_pred HHHHHHHHHHHhc
Q 009036 451 QESCVSVLYALSH 463 (546)
Q Consensus 451 ~e~Av~~L~~L~~ 463 (546)
+|.++.+|-.+..
T Consensus 274 rE~~lQale~fl~ 286 (1233)
T KOG1824|consen 274 REYCLQALESFLR 286 (1233)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877764
No 195
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.94 E-value=3 Score=38.83 Aligned_cols=93 Identities=22% Similarity=0.188 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHH
Q 009036 240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVL 319 (546)
Q Consensus 240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL 319 (546)
++.+|..++..+..|+...+. +++ ..++.+...|.++++.++..|+.+|..|...+--|.+ ...+..++..|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 356777888888888875432 221 3478888999999999999999999998876443321 22447788888
Q ss_pred ccCCHHHHHHHHHHHhhcccc
Q 009036 320 MAGSAEAQEHACGAIFSLALD 340 (546)
Q Consensus 320 ~~~~~~~~~~Aa~~L~~Ls~~ 340 (546)
.+.+++++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999999988665
No 196
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.86 E-value=3.2 Score=43.44 Aligned_cols=240 Identities=16% Similarity=0.168 Sum_probs=132.4
Q ss_pred chhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-CCHHHH-HHHHHHHHHhhcCCch
Q 009036 226 NEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-RYTNVQ-VNAVAALVNLSLEKIN 302 (546)
Q Consensus 226 ~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~-~~A~~~L~nLs~~~~n 302 (546)
...++.++..|. +.+...|+.++-.|..-+. ++..|..+...|.+..+.+.+.. ++..+- -.++.++.-++.+..+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~ 98 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN 98 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence 356788888886 3355678888888777666 46899999999999999999843 333233 3344445556666555
Q ss_pred HHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhh--cCChHHHHHhhc---------cCCHHHHHH
Q 009036 303 KMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGV--LGALPPLLHLLK---------SDSERTQHD 370 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~l~~Lv~lL~---------~~~~~~~~~ 370 (546)
...+.....+..++.+|... ......... ...+..+.. ...+..+...+. .....-+..
T Consensus 99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~---------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~l 169 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSD---------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTL 169 (361)
T ss_pred hhhhhchhHHHHHHHHhccccccccccchh---------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccH
Confidence 55555556667767777611 000000000 000000000 001111111110 011223334
Q ss_pred HHHHHHHhh--------------cC-chhHHHHHhcCcHHHHHHHHhC----c------------h--HHHHHHHHHHHh
Q 009036 371 SALALYHLS--------------LV-KSNRTKLVKLGSVNALLGMVNS----G------------H--MTGRVLLILGNL 417 (546)
Q Consensus 371 A~~aL~~Ls--------------~~-~~n~~~iv~~Gav~~Lv~lL~~----~------------~--~~e~al~~L~nL 417 (546)
|+.+|-.++ .. +.-++++...|++..+++++.+ . + ..+.++.+|.+.
T Consensus 170 all~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~ 249 (361)
T PF07814_consen 170 ALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESV 249 (361)
T ss_pred HHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence 444554443 01 1236777788999999999862 1 0 456799999998
Q ss_pred hC-CcccHHHHHh--CCcHHHHHH-HHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHC
Q 009036 418 AS-CSDGRVAVLD--SGGVECLVG-MLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAA 475 (546)
Q Consensus 418 a~-~~e~r~~i~~--~g~i~~Lv~-lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~ 475 (546)
+. ..++...+.. .+.+..+.. ++.............++.+|.|++.+++..+..+...
T Consensus 250 T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~ 311 (361)
T PF07814_consen 250 TFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASP 311 (361)
T ss_pred HhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhh
Confidence 74 4556666664 233333333 3333110123345788999999999875555544433
No 197
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.83 E-value=2.3 Score=43.93 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=137.1
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhH-----Hhh-c-CChHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRV-----SLC-T-PRLLLALRSLIISRYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~-----~l~-~-~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 298 (546)
.+.+..|+..|..-+.+.+..+......+.+.....+. .+. . ..++..|+.--.. +++--.+-..|.....
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~--~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN--PDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS--TTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC--ccccchHHHHHHHHHh
Confidence 45667888889889999999999988888877554432 333 2 4556666665553 4444556677788777
Q ss_pred CCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-ch-hhHHhh--cCChHHHHHhhccCCHHHHHHHHHH
Q 009036 299 EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QN-KTAIGV--LGALPPLLHLLKSDSERTQHDSALA 374 (546)
Q Consensus 299 ~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~-k~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~a 374 (546)
++.-...|.....+..+......++-++...|..++..|-..+ .. .+.+.. ...+.....+|.+++--+++.++..
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 7776777777778888999999999999999999998865443 22 222322 3456677788999999999999999
Q ss_pred HHHhhcCchhHHHHHhc----CcHHHHHHHHhCch--HHHHHHHHHHHhhCCc
Q 009036 375 LYHLSLVKSNRTKLVKL----GSVNALLGMVNSGH--MTGRVLLILGNLASCS 421 (546)
Q Consensus 375 L~~Ls~~~~n~~~iv~~----Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~ 421 (546)
|..|-..+.|-.-|... .-+..++.+|.+.+ ++-.|.-++.-...+|
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 99999988886655433 56777888888754 8888888887665544
No 198
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.79 E-value=1.7 Score=42.81 Aligned_cols=148 Identities=19% Similarity=0.147 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHhhc-CchhHHHHHhc-CcHHHHHHHHhC-------ch-------HHHHHHHHHHHhhCCcccHHHH
Q 009036 364 SERTQHDSALALYHLSL-VKSNRTKLVKL-GSVNALLGMVNS-------GH-------MTGRVLLILGNLASCSDGRVAV 427 (546)
Q Consensus 364 ~~~~~~~A~~aL~~Ls~-~~~n~~~iv~~-Gav~~Lv~lL~~-------~~-------~~e~al~~L~nLa~~~e~r~~i 427 (546)
+++.++.|+.-|..--. .++-...+-.. |.+..|++=+-+ +. -...|+++|-.+|++++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 45566655554443322 22233334344 888887754432 11 3346889999999999999999
Q ss_pred HhCCcHHHHHHHHccCCCC--CHHHHHHHHHHHHHHhc-CChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 428 LDSGGVECLVGMLRKGTEL--SESTQESCVSVLYALSH-GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 428 ~~~g~i~~Lv~lL~~~~~~--s~~~~e~Av~~L~~L~~-~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
+++...-.|...|...... -+-.+-..++++..|.+ ++.+......+..+++..++.++.|++-.|..|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999777777777664211 13466778888888887 45567777888899999999999999999999999998887
Q ss_pred cCCcccc
Q 009036 505 GRAEEEE 511 (546)
Q Consensus 505 ~~~~~~~ 511 (546)
.++.+-+
T Consensus 168 ~dd~GL~ 174 (262)
T PF04078_consen 168 LDDVGLN 174 (262)
T ss_dssp HSHHHHH
T ss_pred cchhHHH
Confidence 6554433
No 199
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.75 E-value=0.013 Score=65.42 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=38.6
Q ss_pred eeCcccccccCCCeecCCCccccHHHHHHHHhc-CCCCCCCCCCCCCC
Q 009036 46 FLCPVSGSLMADPVVVSSGHTFERACAHVCKTL-GFTPTLVDGTTPDF 92 (546)
Q Consensus 46 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-~~~~cp~~~~~~~~ 92 (546)
+.|+||.+ -.+||++.|||.||++|+.+.++. ...|||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 899999999999999999886653 44599999765543
No 200
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.62 E-value=0.32 Score=38.22 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHHhCC
Q 009036 368 QHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVLDSG 431 (546)
Q Consensus 368 ~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~~~g 431 (546)
.+.|++++.++++.+....-+-+.++|+.++++....+ ++--|..+|..++...+|.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 47899999999998777777777799999999998654 78889999999999999999887766
No 201
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.62 E-value=0.67 Score=45.68 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhc-CCchHHHHHhcCChHHHHHHHcc
Q 009036 244 VEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSL-EKINKMLIVRSGLVPPIVDVLMA 321 (546)
Q Consensus 244 ~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~-~~~nk~~i~~~g~l~~Lv~lL~~ 321 (546)
...|+..|.-++--++..|..+.+...+..|+.+|. ...+.++..++.+|..+.. ++.|...+.+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 455778888888888899999999999999999995 4678999999988876555 58999999999999999999997
Q ss_pred C--CHHHHHHHHHHHhhc
Q 009036 322 G--SAEAQEHACGAIFSL 337 (546)
Q Consensus 322 ~--~~~~~~~Aa~~L~~L 337 (546)
. +.+++......|.-.
T Consensus 188 ~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFY 205 (257)
T ss_pred ccccHHHhHHHHHHHHHH
Confidence 6 678888888877543
No 202
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.57 E-value=2.3 Score=49.70 Aligned_cols=253 Identities=15% Similarity=0.134 Sum_probs=140.6
Q ss_pred CHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc---C--CchHHHHHhcCChH
Q 009036 240 QVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL---E--KINKMLIVRSGLVP 313 (546)
Q Consensus 240 ~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~---~--~~nk~~i~~~g~l~ 313 (546)
..+.+.+|+..|+.++..- ++.+- ..++|.++.++..+...+|..|+.+|..+.. + +.+...+.+. .+|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP 510 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFP 510 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhh
Confidence 3456889999999998753 23332 3579999999999999999999888765432 2 2333333333 778
Q ss_pred HHHHHHccC-CHHHHHHHHHHHhhcccc------------------c-chhhHHhh--c-------CChH-HHHHhhccC
Q 009036 314 PIVDVLMAG-SAEAQEHACGAIFSLALD------------------D-QNKTAIGV--L-------GALP-PLLHLLKSD 363 (546)
Q Consensus 314 ~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~------------------~-~~k~~i~~--~-------g~l~-~Lv~lL~~~ 363 (546)
.|-.++.+. ...+|..-|..|..|+.. + ++...... . ..++ ..+.+|.+.
T Consensus 511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~ 590 (1431)
T KOG1240|consen 511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS 590 (1431)
T ss_pred hhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC
Confidence 888888773 333333333333322211 1 11000000 0 1122 222334444
Q ss_pred CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhh---CCcccHHHHHhCCcHHHHHHHH
Q 009036 364 SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLA---SCSDGRVAVLDSGGVECLVGML 440 (546)
Q Consensus 364 ~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa---~~~e~r~~i~~~g~i~~Lv~lL 440 (546)
.+-+++.-+..|.-||..-. |.+ -..=.++.|+.+|.+++..-++ +.+..+. ..-.-| -++...+|.|.+-|
T Consensus 591 ~~~Vkr~Lle~i~~LC~FFG-k~k-sND~iLshLiTfLNDkDw~LR~-aFfdsI~gvsi~VG~r--s~seyllPLl~Q~l 665 (1431)
T KOG1240|consen 591 PPIVKRALLESIIPLCVFFG-KEK-SNDVILSHLITFLNDKDWRLRG-AFFDSIVGVSIFVGWR--SVSEYLLPLLQQGL 665 (1431)
T ss_pred chHHHHHHHHHHHHHHHHhh-hcc-cccchHHHHHHHhcCccHHHHH-HHHhhccceEEEEeee--eHHHHHHHHHHHhc
Confidence 44566666667777765210 000 0112456677777776522221 2223333 211111 12334556666666
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 441 RKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 441 ~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
.++ .+-+...|++.|..||..+--.+..+.+ .++...-++-+.|.=+|+.+..++-...+.-
T Consensus 666 tD~---EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 666 TDG---EEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred cCc---chhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 663 3678889999999998854323333333 4556666788889999999998887776543
No 203
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=1.5 Score=48.93 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=99.5
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG 348 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~ 348 (546)
++.+-+++.....|.+.+.-.-.-|.|-+....... .+++..++.=..+.++.+|.-|.+.+..+-...-.
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~----- 119 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT----- 119 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH----HhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH-----
Confidence 456777777777887777665555666555322111 23455555555667899998888888777432111
Q ss_pred hcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCc
Q 009036 349 VLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCS 421 (546)
Q Consensus 349 ~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~ 421 (546)
.-...+|...++++++.+++.|+....++ +..+.......|.++.|-.++.+.+ +...|+.+|..+....
T Consensus 120 -ey~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 120 -EYLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred -HHHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 12567888999999999999988877776 4455666677799999999998654 8899999999988644
No 204
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.40 E-value=6.8 Score=41.63 Aligned_cols=207 Identities=18% Similarity=0.179 Sum_probs=128.4
Q ss_pred HHHHHccCCHHHHHHHHHHHhhccccc----chhhHHhhcCChHHHHHhhccC-------CHHHHHHHHHHHHHhhcCch
Q 009036 315 IVDVLMAGSAEAQEHACGAIFSLALDD----QNKTAIGVLGALPPLLHLLKSD-------SERTQHDSALALYHLSLVKS 383 (546)
Q Consensus 315 Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~----~~k~~i~~~g~l~~Lv~lL~~~-------~~~~~~~A~~aL~~Ls~~~~ 383 (546)
+..++...+.+-|..|.-....+...+ .+|..+.+.=+++.+-++|..+ +.-.+..++..|...|+.++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 444455556666666655556666554 3577777776778888888753 33456667788888999876
Q ss_pred h--HHHHHhcCcHHHHHHHHhCc---h------HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHH
Q 009036 384 N--RTKLVKLGSVNALLGMVNSG---H------MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQE 452 (546)
Q Consensus 384 n--~~~iv~~Gav~~Lv~lL~~~---~------~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e 452 (546)
. .+.|++ .||.|.+++..+ + +.+.+-.+|..++..+.|...++..|+++.+.++-.-.. .+. -.+
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~-~~~-d~a 171 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD-GSH-DMA 171 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC-Cch-hHH
Confidence 4 566666 599999999742 2 678889999999999999999999999999998765421 112 234
Q ss_pred HHHHHHHHHhcC----ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcc-----ccccCChHHHHhcC
Q 009036 453 SCVSVLYALSHG----GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE-----EEEGVDWDELLDSG 523 (546)
Q Consensus 453 ~Av~~L~~L~~~----~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~-----~~~~~~~~~~~~~~ 523 (546)
.|+.+|.-+... ++....... ++..+.+=++......|-.+..+|..+-..... ...+..|-+-+..|
T Consensus 172 lal~Vlll~~~~~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G 248 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG 248 (698)
T ss_pred HHHHHHHHHHHhcccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH
Confidence 555555444331 111111110 123333333344555566666666633322221 12566888888777
Q ss_pred Ccccc
Q 009036 524 LVSRS 528 (546)
Q Consensus 524 ~~~~~ 528 (546)
.+.-+
T Consensus 249 ~~~IL 253 (698)
T KOG2611|consen 249 VVAIL 253 (698)
T ss_pred HHHHH
Confidence 76544
No 205
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.39 E-value=8.9 Score=41.68 Aligned_cols=268 Identities=11% Similarity=0.045 Sum_probs=153.9
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHhccChhhhHHhhcCC--hHHHHHHHHcc-CCHHHHHHHHHHHHHhhc-CCchH
Q 009036 229 EDYFVQKLKSP-QVHEVEEALISLRKLTRSREETRVSLCTPR--LLLALRSLIIS-RYTNVQVNAVAALVNLSL-EKINK 303 (546)
Q Consensus 229 i~~lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~l~~~g--~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~-~~~nk 303 (546)
.+.+++..-.. ....+++++..+...+....- ...+...+ ++......++. .+..++-.|+.+|.+-.. -..|-
T Consensus 135 m~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf 213 (858)
T COG5215 135 MEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNF 213 (858)
T ss_pred HHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444333 345677888888877654221 22222222 23333334443 577888888888876221 11111
Q ss_pred HHHHh-cCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036 304 MLIVR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 304 ~~i~~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 381 (546)
..-.+ .=++...++.-+..+.+++..|...|..+.... ..-..+.+.-......+.+++.+.++...|+..-..+|..
T Consensus 214 ~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeE 293 (858)
T COG5215 214 CYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEE 293 (858)
T ss_pred cchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 10011 114566677777889999999999988765432 3323444444445556778888999888888655455531
Q ss_pred c---------------hhHH--HHHhcCcHHHHHHHHhCc------h---HHHH---HHHHHHHhhCCcccHHHHHhCCc
Q 009036 382 K---------------SNRT--KLVKLGSVNALLGMVNSG------H---MTGR---VLLILGNLASCSDGRVAVLDSGG 432 (546)
Q Consensus 382 ~---------------~n~~--~iv~~Gav~~Lv~lL~~~------~---~~e~---al~~L~nLa~~~e~r~~i~~~g~ 432 (546)
. .|.. ...-..++|.|+.+|... + +... |+.....++.. . .
T Consensus 294 eid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-----~-----i 363 (858)
T COG5215 294 EIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-----K-----I 363 (858)
T ss_pred HhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-----H-----h
Confidence 1 0111 111225789999999751 1 3333 44444444331 2 2
Q ss_pred HHHHHHHHccC-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 433 VECLVGMLRKG-TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 433 i~~Lv~lL~~~-~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
+.+++..+... ...+-.-+|.|+-++..+-.+....+..-.-+.+++.+..++.+..--+|+.+++++-.++.+-
T Consensus 364 ~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v 439 (858)
T COG5215 364 MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV 439 (858)
T ss_pred HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence 33344443331 1134567899999999988765444333233447888888888888889999999998887643
No 206
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.31 E-value=7.5 Score=40.13 Aligned_cols=200 Identities=12% Similarity=0.082 Sum_probs=135.9
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhh--HH-hhcCC-hHHHHHhhcc-CCHHHHHHHHHHHHHhh
Q 009036 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKT--AI-GVLGA-LPPLLHLLKS-DSERTQHDSALALYHLS 379 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~--~i-~~~g~-l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls 379 (546)
+...+.+..|+..|..-+.+.|..++.+..++.... +.+. .+ .-..- -+.|..++.. ++++.--.+...|...+
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~ 151 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECI 151 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 345688999999999999999999999998886653 2221 11 11122 2222223322 35666667777888888
Q ss_pred cCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHh-hCCcccHHHHHhCC---cHHHHHHHHccCCCCCHHHHHH
Q 009036 380 LVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNL-ASCSDGRVAVLDSG---GVECLVGMLRKGTELSESTQES 453 (546)
Q Consensus 380 ~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nL-a~~~e~r~~i~~~g---~i~~Lv~lL~~~~~~s~~~~e~ 453 (546)
.++.....+.....+..+.+.+..+. +...|..++..| ..+..-...++... .....-++|.+ .+-.++.+
T Consensus 152 k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s---~NYvtkrq 228 (335)
T PF08569_consen 152 KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES---SNYVTKRQ 228 (335)
T ss_dssp TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT----SSHHHHHH
T ss_pred hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC---CCeEeehh
Confidence 88877888888888888999888765 788888888875 45666666666543 55666777777 46889999
Q ss_pred HHHHHHHHhcCChhhH---HHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 454 CVSVLYALSHGGLRFK---GLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 454 Av~~L~~L~~~~~~~~---~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
++..|..|-.+..... ..+.+..-+..++.++++.+..++-.|-.+++.+...+.
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 9999999987543322 334444567888889999999999888888888766543
No 207
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.24 E-value=1.9 Score=46.62 Aligned_cols=166 Identities=17% Similarity=0.113 Sum_probs=98.5
Q ss_pred cCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhcc-cccch-hhHHhh--cC--
Q 009036 280 SRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLA-LDDQN-KTAIGV--LG-- 351 (546)
Q Consensus 280 s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls-~~~~~-k~~i~~--~g-- 351 (546)
++|+.++..|-.-|.+++..+-.+ ++..++++|-+. .+++|..|.-+|.|-. ..++. +..... .|
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~q-------f~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~ 88 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFEQ-------FISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMR 88 (858)
T ss_pred CCCCCccccHHHHHHHhccccHHH-------HHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCC
Confidence 567777777777788776543322 456677777543 6888988888887743 33322 222211 11
Q ss_pred -----ChH-HHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHh----Cc---hHHHHHHHHHHHhh
Q 009036 352 -----ALP-PLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVN----SG---HMTGRVLLILGNLA 418 (546)
Q Consensus 352 -----~l~-~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~----~~---~~~e~al~~L~nLa 418 (546)
-++ ..++.|++..++....|+.+|..++..+ +-.|..|-|++.+. ++ ..+..++.++.+.|
T Consensus 89 ~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 89 HESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 111 1234455556666677777777665532 22255555555543 22 27888999999999
Q ss_pred CCcccHHHHHhCC-cHHHHHH-HHccCCCCCHHHHHHHHHHHHH
Q 009036 419 SCSDGRVAVLDSG-GVECLVG-MLRKGTELSESTQESCVSVLYA 460 (546)
Q Consensus 419 ~~~e~r~~i~~~g-~i~~Lv~-lL~~~~~~s~~~~e~Av~~L~~ 460 (546)
....-...+...+ ++-.++. .++.+ .+..++-.|+.+|..
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~e--t~~avRLaaL~aL~d 204 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKNE--TTSAVRLAALKALMD 204 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhcccC--chHHHHHHHHHHHHH
Confidence 8765533333344 4444444 45554 457788889998887
No 208
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.21 E-value=4.5 Score=41.03 Aligned_cols=167 Identities=17% Similarity=0.106 Sum_probs=106.6
Q ss_pred HHHHH-HhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC--CchHHH
Q 009036 229 EDYFV-QKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE--KINKML 305 (546)
Q Consensus 229 i~~lv-~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~nk~~ 305 (546)
++.+| ..+++.+..+|+.|++.|...+--+.+. . ...++.+...+..++..++..|+.+|..+... ......
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----A-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----H-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 44444 5678999999999999999877644321 1 12367777777778999999999999877642 111111
Q ss_pred -------HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhcc----CCHHHHHHHHHH
Q 009036 306 -------IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKS----DSERTQHDSALA 374 (546)
Q Consensus 306 -------i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~----~~~~~~~~A~~a 374 (546)
......+..+...|.+.+++++..|+..+..|........ ....+..|+-+.-+ ++++.+..-...
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 1123567788888888899999999999988765543211 12344444433322 355665444445
Q ss_pred HHHhhcCchhHHHHHhcCcHHHHHHHHhC
Q 009036 375 LYHLSLVKSNRTKLVKLGSVNALLGMVNS 403 (546)
Q Consensus 375 L~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~ 403 (546)
+-..+......+..+....++.+..+...
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 65666655544555555577776666654
No 209
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.98 E-value=5.9 Score=42.10 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=98.0
Q ss_pred HHHccCCHHHHHHHHHHHHHhhcC----CchHHHHHhcCChHHHHHHHccC-------CHHHHHHHHHHHhhcccccchh
Q 009036 276 SLIISRYTNVQVNAVAALVNLSLE----KINKMLIVRSGLVPPIVDVLMAG-------SAEAQEHACGAIFSLALDDQNK 344 (546)
Q Consensus 276 ~lL~s~~~~v~~~A~~~L~nLs~~----~~nk~~i~~~g~l~~Lv~lL~~~-------~~~~~~~Aa~~L~~Ls~~~~~k 344 (546)
.++...+.+-+-.|+-....+.++ ..||+.+.++=+.+.+=++|.++ +.-.+..+..+|.-++.+++..
T Consensus 18 ~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElA 97 (698)
T KOG2611|consen 18 KLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELA 97 (698)
T ss_pred HHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhc
Confidence 344444444455555555666664 25788888888888888888754 2345677788888888887643
Q ss_pred hHHhhcCChHHHHHhhccC-CH------HHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHH
Q 009036 345 TAIGVLGALPPLLHLLKSD-SE------RTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLIL 414 (546)
Q Consensus 345 ~~i~~~g~l~~Lv~lL~~~-~~------~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L 414 (546)
..-.....||.|..++..+ ++ -...++-.+|+.++..+.....++..|+++.+.++-..++ -.+.++.++
T Consensus 98 sh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vl 177 (698)
T KOG2611|consen 98 SHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVL 177 (698)
T ss_pred cCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHH
Confidence 2222235789999998652 22 3667888899999999999999999999999998765433 344455555
Q ss_pred HHhh
Q 009036 415 GNLA 418 (546)
Q Consensus 415 ~nLa 418 (546)
..+.
T Consensus 178 ll~~ 181 (698)
T KOG2611|consen 178 LLLV 181 (698)
T ss_pred HHHH
Confidence 5444
No 210
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.88 E-value=0.82 Score=45.53 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=100.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcC--ChHHHHHHHcc----CCHHHHHHHHHHHhhcccccchh
Q 009036 271 LLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSG--LVPPIVDVLMA----GSAEAQEHACGAIFSLALDDQNK 344 (546)
Q Consensus 271 i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g--~l~~Lv~lL~~----~~~~~~~~Aa~~L~~Ls~~~~~k 344 (546)
+..+...+.....+-+--++..++-+..++..-..+...+ ....+..++.. ..+..+..+++++.|+-.....+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 4555556666655556667777877777776666665443 34555555543 36788899999999998888777
Q ss_pred hHHhh-cC-ChHHHHHhhccC----CHHHHHHHHHHHHHhhcCc-hhH-HHHHhcCcHHHHHHHHh----CchHHHHHHH
Q 009036 345 TAIGV-LG-ALPPLLHLLKSD----SERTQHDSALALYHLSLVK-SNR-TKLVKLGSVNALLGMVN----SGHMTGRVLL 412 (546)
Q Consensus 345 ~~i~~-~g-~l~~Lv~lL~~~----~~~~~~~A~~aL~~Ls~~~-~n~-~~iv~~Gav~~Lv~lL~----~~~~~e~al~ 412 (546)
..+.. .+ .+...+..+... +..++..++.+++|++..- .++ ..-.....+..+++.+. +.+...+++.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 77765 33 444444444443 6778888899999997632 111 11111123445555332 3458889999
Q ss_pred HHHHhhCCcccHHHHHhC
Q 009036 413 ILGNLASCSDGRVAVLDS 430 (546)
Q Consensus 413 ~L~nLa~~~e~r~~i~~~ 430 (546)
+|.+|...+.........
T Consensus 225 AlGtL~~~~~~~~~~~~~ 242 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKS 242 (268)
T ss_dssp HHHHHHCCSHHHHHHCCC
T ss_pred HHHHHhccChhHHHHHHH
Confidence 999999777666666653
No 211
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.85 E-value=6.5 Score=38.68 Aligned_cols=193 Identities=20% Similarity=0.191 Sum_probs=115.4
Q ss_pred chhHHHHHHhcC--CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC---
Q 009036 226 NEQEDYFVQKLK--SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK--- 300 (546)
Q Consensus 226 ~~~i~~lv~~L~--s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~--- 300 (546)
..+++.++..|. +..+.+|.+|...|..+.. ...++.|-+..+.+...+.+.+..+|..+--..
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 467788888884 4567788899999887663 255677777776666666665555554432100
Q ss_pred --chHHHH--------HhcCChHHHHHHHccC-CHHHHH-HHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHH
Q 009036 301 --INKMLI--------VRSGLVPPIVDVLMAG-SAEAQE-HACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQ 368 (546)
Q Consensus 301 --~nk~~i--------~~~g~l~~Lv~lL~~~-~~~~~~-~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~ 368 (546)
.+.... ...+-+..|-..|... .+.... .|.-.|.++ +...+|..|++-|..++.-.+
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccchHHHH
Confidence 000000 0112233343333332 232222 222233332 223466677777777777788
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch----HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCC
Q 009036 369 HDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH----MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGT 444 (546)
Q Consensus 369 ~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~ 444 (546)
..++.++..|-+ .-+|+.|.+.|.+.. ++-.|+.+|..++. ..++..|.+.+..
T Consensus 205 hEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D-- 262 (289)
T KOG0567|consen 205 HEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGD-- 262 (289)
T ss_pred HHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCC--
Confidence 888888877633 247888888887633 77788888877664 3467777777777
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 009036 445 ELSESTQESCVSVLYALS 462 (546)
Q Consensus 445 ~~s~~~~e~Av~~L~~L~ 462 (546)
.++.+++.|..+|-.+-
T Consensus 263 -~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 263 -EERVVRESCEVALDMLE 279 (289)
T ss_pred -cHHHHHHHHHHHHHHHH
Confidence 45677788777775543
No 212
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.79 E-value=0.62 Score=43.47 Aligned_cols=93 Identities=20% Similarity=0.167 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc
Q 009036 282 YTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK 361 (546)
Q Consensus 282 ~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~ 361 (546)
|+.++.+++.++..|+....+- + ...++.+...|++.++.+|..|+.+|..|...+-.|. ....+..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~---v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL---V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH---H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHHc
Confidence 5678889999999887643332 2 2368899999999999999999999999976543322 1223477888888
Q ss_pred cCCHHHHHHHHHHHHHhhcC
Q 009036 362 SDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 362 ~~~~~~~~~A~~aL~~Ls~~ 381 (546)
+++++++..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 213
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.73 E-value=0.095 Score=50.24 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=41.5
Q ss_pred CCceeCcccccccCCC----eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 009036 43 PGEFLCPVSGSLMADP----VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVI 96 (546)
Q Consensus 43 p~~~~CpI~~~~m~dP----V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~ 96 (546)
-..|+|||++-.|.+= ++-+|||.|.-.++.+. +...|++|+..+..++.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCcccccCeE
Confidence 4679999999999886 34599999999998664 456899999998877644
No 214
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.61 E-value=11 Score=39.70 Aligned_cols=98 Identities=17% Similarity=0.279 Sum_probs=77.6
Q ss_pred hhc-CChHHHHHHHHccC---CHHHHHHHHHHHHHhhc-CCchHHHHHhcCChHHHHHHHc-cC---CHHHHHHHHHHHh
Q 009036 265 LCT-PRLLLALRSLIISR---YTNVQVNAVAALVNLSL-EKINKMLIVRSGLVPPIVDVLM-AG---SAEAQEHACGAIF 335 (546)
Q Consensus 265 l~~-~g~i~~Lv~lL~s~---~~~v~~~A~~~L~nLs~-~~~nk~~i~~~g~l~~Lv~lL~-~~---~~~~~~~Aa~~L~ 335 (546)
+.+ ..++..|...+.+. .+.+-..|+.++..+.. +|..-..|.+.|.++.+++.+. .+ +.++...--.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444 44555666666654 35677778888887766 4778888889999999999888 54 6778777888899
Q ss_pred hcccccchhhHHhhcCChHHHHHhhcc
Q 009036 336 SLALDDQNKTAIGVLGALPPLLHLLKS 362 (546)
Q Consensus 336 ~Ls~~~~~k~~i~~~g~l~~Lv~lL~~ 362 (546)
.|+.+....+.+.+.+.++.+++++.+
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 999999999999989999999999876
No 215
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.54 E-value=0.97 Score=42.17 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=80.4
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc---------CCHHHHHHHHHHHHHh
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS---------RYTNVQVNAVAALVNL 296 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s---------~~~~v~~~A~~~L~nL 296 (546)
...+.++..|++..... +.+..|+...+.++ .--..|++.||+..|+.+|.. .+...+..++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 45677888887665543 55666665555544 345677788999999998862 4567888899999988
Q ss_pred hcCCchHHHHHh-cCChHHHHHHHccCCHHHHHHHHHHHhhcc
Q 009036 297 SLEKINKMLIVR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLA 338 (546)
Q Consensus 297 s~~~~nk~~i~~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls 338 (546)
.....+...+.. .+++..|+..|.+.+..++..++.+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 887777777765 588999999999999999999999998765
No 216
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.20 E-value=7.4 Score=43.80 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=88.2
Q ss_pred HhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch-HHHHHHHHHHHhhCCccc-------------
Q 009036 358 HLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH-MTGRVLLILGNLASCSDG------------- 423 (546)
Q Consensus 358 ~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~-~~e~al~~L~nLa~~~e~------------- 423 (546)
.+|.+.++.+...++.+.++|+...++. +.++.|+.+|.+.. ++.-.|..+..++.-..+
T Consensus 294 pLl~S~n~sVVmA~aql~y~lAP~~~~~------~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~s 367 (968)
T KOG1060|consen 294 PLLQSRNPSVVMAVAQLFYHLAPKNQVT------KIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRS 367 (968)
T ss_pred HHHhcCCcHHHHHHHhHHHhhCCHHHHH------HHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeec
Confidence 3455567888888999999997744221 34778888887643 555555555554431110
Q ss_pred ---------HHH----HHhCCcHHHHHH----HHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHh
Q 009036 424 ---------RVA----VLDSGGVECLVG----MLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMER 486 (546)
Q Consensus 424 ---------r~~----i~~~g~i~~Lv~----lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~ 486 (546)
+-. ++++.-|..+++ ++.+ .+......|+.+|...+..... ...-++.-|+.++.
T Consensus 368 sDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s---~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Lls 439 (968)
T KOG1060|consen 368 SDPTQVKILKLEILSNLANESNISEILRELQTYIKS---SDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLS 439 (968)
T ss_pred CCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHh
Confidence 111 222232333332 3333 1223444445554443322111 22336788999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCccccc--cCChHHHHhcCCccccc
Q 009036 487 VGSEHVKEKAKRMLELMKGRAEEEEE--GVDWDELLDSGLVSRSR 529 (546)
Q Consensus 487 ~~s~~~k~~A~~lL~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~ 529 (546)
+.+..+-..|...++.|-...+-+.. -....+.++...|.+-|
T Consensus 440 shde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~AR 484 (968)
T KOG1060|consen 440 SHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAAR 484 (968)
T ss_pred cccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhh
Confidence 99999999999999988876654441 11234455555555544
No 217
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.18 E-value=1.2 Score=37.26 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=51.8
Q ss_pred CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 430 SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG-LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 430 ~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~-~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
...+++++..+.+ .+.+++..|+.+|.+++... ...-..+ ..++..|.+++.+.++.+|..|..+-+.|.
T Consensus 26 ~~Il~pVL~~~~D---~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 26 DEILPPVLKCFDD---QDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 3467888888877 56899999999999998742 1222222 337789999999999999988866666553
No 218
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.12 E-value=7.3 Score=39.77 Aligned_cols=180 Identities=17% Similarity=0.206 Sum_probs=98.4
Q ss_pred cCCHHHHHHHHHHHHHhhcCCchHHHHH--hcCChHHHHHHHccCCHHHHHHHHHHHhhcccc---cchhhHHhhcCChH
Q 009036 280 SRYTNVQVNAVAALVNLSLEKINKMLIV--RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD---DQNKTAIGVLGALP 354 (546)
Q Consensus 280 s~~~~v~~~A~~~L~nLs~~~~nk~~i~--~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~---~~~k~~i~~~g~l~ 354 (546)
......++.++..|.++.....-...+. ....+..+...++.|..+-+..|+.++.-|+.. ......+.+ ...+
T Consensus 54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~ 132 (309)
T PF05004_consen 54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKP 132 (309)
T ss_pred hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHH
Confidence 3345566677777666554322222222 124678888889988777777888888777655 122333333 3667
Q ss_pred HHHHhhccC--CHHHHHHHHHHHHHhhcCch-hHHHHHhc-CcHHHHH--HHHh-C-----------chHHHHHHHHHHH
Q 009036 355 PLLHLLKSD--SERTQHDSALALYHLSLVKS-NRTKLVKL-GSVNALL--GMVN-S-----------GHMTGRVLLILGN 416 (546)
Q Consensus 355 ~Lv~lL~~~--~~~~~~~A~~aL~~Ls~~~~-n~~~iv~~-Gav~~Lv--~lL~-~-----------~~~~e~al~~L~n 416 (546)
.|...+.++ ...++..++.+|.-++.... .-..+.+. ..+..+. ..+. + +.+...|+..-..
T Consensus 133 ~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~l 212 (309)
T PF05004_consen 133 VLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWAL 212 (309)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHH
Confidence 788888765 44565666666665544211 11111100 1222111 1111 1 1255566666555
Q ss_pred hhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 417 LASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 417 La~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
|... +...-.-.-...++.|+.+|.+ .+..++..|-.+|+-|..
T Consensus 213 Llt~~~~~~~~~~~~~~~~~l~~lL~s---~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 213 LLTTLPDSKLEDLLEEALPALSELLDS---DDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 5543 3322221124568999999998 467888888777766643
No 219
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.93 E-value=0.36 Score=41.72 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=56.1
Q ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 432 GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
.+..|+++|... .++....-|+.=|..++..-+..+.++.+.|+-..+++|+.+.++++|..|..+++.|-
T Consensus 44 llk~L~~lL~~s--~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKS--DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SH--HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC--CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 678899999653 24555666667777778766788999999999999999999999999999999998764
No 220
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.83 E-value=2.2 Score=47.87 Aligned_cols=198 Identities=13% Similarity=0.098 Sum_probs=126.8
Q ss_pred CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHh-hcccccchhhHHhhcCChHHHHHhhccCC-HHHHHHHHHHHHH
Q 009036 300 KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIF-SLALDDQNKTAIGVLGALPPLLHLLKSDS-ERTQHDSALALYH 377 (546)
Q Consensus 300 ~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~-~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~-~~~~~~A~~aL~~ 377 (546)
..-+...++.|+...|+.+......+.+..+..+|. .+....+- ....++.+...+..+. .--.-+++.+|.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 344455567899999999999888899988888888 22221110 1234445555544321 1233478889999
Q ss_pred hhc-CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHH-Hh-CCcHHHHHHHHccCCCCCHHHHH
Q 009036 378 LSL-VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAV-LD-SGGVECLVGMLRKGTELSESTQE 452 (546)
Q Consensus 378 Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i-~~-~g~i~~Lv~lL~~~~~~s~~~~e 452 (546)
|++ +...|.+++..-+++.+-.++.+.+ .+..++..+.||.-++.--+.. ++ ....+.....+.. ..+...-
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~---~~E~~~l 645 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV---ADEKFEL 645 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh---hhhHHhh
Confidence 987 4456888888866666555555444 7888999999999877654443 44 4466666655555 2345555
Q ss_pred HHHHHHHHHhcCChhhHH-HHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 453 SCVSVLYALSHGGLRFKG-LAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 453 ~Av~~L~~L~~~~~~~~~-~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
.+++++..+....+.++. ...-......++.++.++++.++..-..+..++..
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 556666655554333333 33333467888999999999998777666655543
No 221
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.43 E-value=8.2 Score=45.31 Aligned_cols=122 Identities=17% Similarity=0.136 Sum_probs=90.0
Q ss_pred hHHHHHHHHc----cCCHHHHHHHHHHHHHhhc-CCchHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccch
Q 009036 270 LLLALRSLII----SRYTNVQVNAVAALVNLSL-EKINKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQN 343 (546)
Q Consensus 270 ~i~~Lv~lL~----s~~~~v~~~A~~~L~nLs~-~~~nk~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~ 343 (546)
+.|.+++.++ ..++++|..|.-+|..+.. ..+.. ...++.|+.++. ++++.+|.++..++.-|+.--.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 5777888884 4689999999888887543 22211 236889999998 66899999999999888654333
Q ss_pred hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhc-CcHHHHHHHHhCch
Q 009036 344 KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKL-GSVNALLGMVNSGH 405 (546)
Q Consensus 344 k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~-Gav~~Lv~lL~~~~ 405 (546)
- -...-+.|...|.+.++.+++.|+.+|.+|-..+ |++. |-+..+..+|.+++
T Consensus 995 l----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~ 1048 (1251)
T KOG0414|consen 995 L----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPN 1048 (1251)
T ss_pred c----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCc
Confidence 1 1224566778888899999999999999997754 3444 88888888888865
No 222
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.32 E-value=0.56 Score=43.83 Aligned_cols=75 Identities=24% Similarity=0.291 Sum_probs=61.2
Q ss_pred HHHHHhcCcHHHHHHHHhCc-----------hHHHHHHHHHHHhhCCcccHHHHHh-CCcHHHHHHHHccCCCCCHHHHH
Q 009036 385 RTKLVKLGSVNALLGMVNSG-----------HMTGRVLLILGNLASCSDGRVAVLD-SGGVECLVGMLRKGTELSESTQE 452 (546)
Q Consensus 385 ~~~iv~~Gav~~Lv~lL~~~-----------~~~e~al~~L~nLa~~~e~r~~i~~-~g~i~~Lv~lL~~~~~~s~~~~e 452 (546)
...+++.|++..|+++|..- .....++.+|..|.....|+..+++ .+++..|+..|.+ .+..++.
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s---~~~~~r~ 176 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS---PNIKTRK 176 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T---TSHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC---CCHHHHH
Confidence 56777888999999888631 2567799999999999999999997 6799999999987 5689999
Q ss_pred HHHHHHHHHh
Q 009036 453 SCVSVLYALS 462 (546)
Q Consensus 453 ~Av~~L~~L~ 462 (546)
.|+.+|..+|
T Consensus 177 ~~leiL~~lc 186 (187)
T PF06371_consen 177 LALEILAALC 186 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999988
No 223
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=91.30 E-value=0.18 Score=36.48 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=25.2
Q ss_pred eeCcccccccCCCeec-CCCcc--ccHHHHHHHHh-cCCCCCCCCCC
Q 009036 46 FLCPVSGSLMADPVVV-SSGHT--FERACAHVCKT-LGFTPTLVDGT 88 (546)
Q Consensus 46 ~~CpI~~~~m~dPV~~-~~G~t--y~r~~i~~~~~-~~~~~cp~~~~ 88 (546)
+.|||+...|+-||-- .|-|. ||-...-+... .+.-.||.|.+
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcC
Confidence 6899999999999985 78775 88766544333 33448999875
No 224
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=91.23 E-value=0.22 Score=35.92 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=31.9
Q ss_pred eCccccc--ccCCCeecCCC-----ccccHHHHHHHHhcC-CCCCCCCC
Q 009036 47 LCPVSGS--LMADPVVVSSG-----HTFERACAHVCKTLG-FTPTLVDG 87 (546)
Q Consensus 47 ~CpI~~~--~m~dPV~~~~G-----~ty~r~~i~~~~~~~-~~~cp~~~ 87 (546)
.|-||++ --.+|.+.||. |-|=+.|+.+|+... ...||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3788885 45778888985 679999999999754 55888873
No 225
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=91.07 E-value=18 Score=39.49 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=44.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc
Q 009036 272 LALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD 341 (546)
Q Consensus 272 ~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~ 341 (546)
|+|-.-|.+.-..++-+++.++..++...-.- .+.+ ..+..|-.+|++.....|-.|+++|..|+...
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~-~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVGS-QFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccCH-HHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 33333344445667777888887776543111 1111 25666777778888999999999999998764
No 226
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=0.15 Score=51.90 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=34.9
Q ss_pred CCceeCcccccccCC---Ceec-CCCccccHHHHHHHHhcC--CCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMAD---PVVV-SSGHTFERACAHVCKTLG--FTPTLVDGTTPDF 92 (546)
Q Consensus 43 p~~~~CpI~~~~m~d---PV~~-~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~~ 92 (546)
|--..|-||-+.+-. =--+ .|||+|.-.|+.+||+.. +..||.|+..+..
T Consensus 2 pi~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 2 PIMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred CccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 344579999665421 1123 599999999999999864 3589999844444
No 227
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=0.16 Score=49.83 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=35.7
Q ss_pred eCccccc-ccCCCee----cCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 47 LCPVSGS-LMADPVV----VSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 47 ~CpI~~~-~m~dPV~----~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
.||+|.. .+..|-+ -+|||+.|-+|.-+-|..|..+||.|+..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 3888863 3444422 28999999999999999999999999877653
No 228
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=90.67 E-value=12 Score=39.42 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=79.2
Q ss_pred cCChHHHHHHHccC---CHHHHHHHHHHHhhcccccch-hhHHhhcCChHHHHHhhc-cC---CHHHHHHHHHHHHHhhc
Q 009036 309 SGLVPPIVDVLMAG---SAEAQEHACGAIFSLALDDQN-KTAIGVLGALPPLLHLLK-SD---SERTQHDSALALYHLSL 380 (546)
Q Consensus 309 ~g~l~~Lv~lL~~~---~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~l~~Lv~lL~-~~---~~~~~~~A~~aL~~Ls~ 380 (546)
...+..|-.+|++. .+.+-..|+.++..+..++.. -..|.+.|.++.+++.+. .+ +.++....-.+|..||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 44566777778765 577888999999988877654 666677999999999998 53 66776777788999999
Q ss_pred CchhHHHHHhcCcHHHHHHHHhCch
Q 009036 381 VKSNRTKLVKLGSVNALLGMVNSGH 405 (546)
Q Consensus 381 ~~~n~~~iv~~Gav~~Lv~lL~~~~ 405 (546)
+....+++.+.++++.+++++.+++
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCHH
Confidence 9999999999999999999998754
No 229
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.53 E-value=3.3 Score=40.88 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhh-CCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHH
Q 009036 407 TGRVLLILGNLA-SCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRME 485 (546)
Q Consensus 407 ~e~al~~L~nLa-~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll 485 (546)
...|+.+|.-+| -++..|..+.+...+..++++|... .++.++-.++.+|..+..+++.....+++.+++..+..++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~--~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS--NPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC--CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 445777887777 4777888888899999999999553 3478889999999888888888888999999999999998
Q ss_pred hcC--CHHHHHHHHHHHHHhhc
Q 009036 486 RVG--SEHVKEKAKRMLELMKG 505 (546)
Q Consensus 486 ~~~--s~~~k~~A~~lL~~L~~ 505 (546)
++. +.++|-|..+.|..+..
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 866 67888899998877754
No 230
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=0.17 Score=51.81 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=39.5
Q ss_pred CCceeCcccccccCCCe-----e---cCCCccccHHHHHHHHhcC------CCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMADPV-----V---VSSGHTFERACAHVCKTLG------FTPTLVDGTTP 90 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV-----~---~~~G~ty~r~~i~~~~~~~------~~~cp~~~~~~ 90 (546)
-.+..|-||++.-.+++ . .+|-|+||-.||.+|-... ...||.|+...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 47899999999999998 3 4699999999999997432 35799998654
No 231
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.33 E-value=1.5 Score=43.91 Aligned_cols=141 Identities=17% Similarity=0.180 Sum_probs=96.1
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
+..+...+..|.+.+|+....++..|+.|+....+....+. .-+|-.+++-+++....+-..|+.++..+...-.+...
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999876554333222 23566777777888888889999998887764333322
Q ss_pred HHhcCChHHHHH-HHccC---CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 009036 306 IVRSGLVPPIVD-VLMAG---SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYH 377 (546)
Q Consensus 306 i~~~g~l~~Lv~-lL~~~---~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~ 377 (546)
- .+..++. +|..+ +..+++.|-.+|..+...-.. .-+++.|+..+++.++.++..++....+
T Consensus 166 ~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 166 Q----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred H----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 1 2333443 34333 567889999999887554222 1256677777888888887776655443
No 232
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.09 E-value=0.55 Score=30.07 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=25.4
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 298 (546)
++|.+++++.+++++++..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999998864
No 233
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=89.96 E-value=0.14 Score=52.19 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=38.4
Q ss_pred eCcccccccCCCeecCCCccccHHHHHHHHhc-CCCCCCCCCCCCC
Q 009036 47 LCPVSGSLMADPVVVSSGHTFERACAHVCKTL-GFTPTLVDGTTPD 91 (546)
Q Consensus 47 ~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-~~~~cp~~~~~~~ 91 (546)
+|-||-+-=+|=-|-+|||-.|-.|+..|..+ +...||.|+..+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 49999999999888899999999999999865 4668998886543
No 234
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=0.25 Score=50.71 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=35.5
Q ss_pred CceeCcccccccCC---CeecCCCccccHHHHHHHHhcCC--CCCCCC
Q 009036 44 GEFLCPVSGSLMAD---PVVVSSGHTFERACAHVCKTLGF--TPTLVD 86 (546)
Q Consensus 44 ~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~--~~cp~~ 86 (546)
.-|.|||..+--.| |+.+.|||..++.+|.+-.+.|. --||=|
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 44799999998777 99999999999999999877665 256555
No 235
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=89.85 E-value=13 Score=42.55 Aligned_cols=264 Identities=12% Similarity=0.040 Sum_probs=134.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHh
Q 009036 230 DYFVQKLKSPQVHEVEEALISLRKLTRS-REETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVR 308 (546)
Q Consensus 230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~ 308 (546)
......++...++.+.+++.....++.. +...+..+...-.+|.+..+..+.+..++...+..+.+++.--. +..-+
T Consensus 358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti- 435 (759)
T KOG0211|consen 358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI- 435 (759)
T ss_pred hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc-
Confidence 4444555555555555555555555443 22233444445557777777777777777766666665543211 11111
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHH
Q 009036 309 SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-NKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTK 387 (546)
Q Consensus 309 ~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~ 387 (546)
.-.++.++..++...+.++.+-...+..+-...+ .-........++.++.+-....-+++.+.+..+..++.... ..
T Consensus 436 ~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~ 513 (759)
T KOG0211|consen 436 SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VE 513 (759)
T ss_pred cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hH
Confidence 2356777777888888888887766655433322 22233344566777776666567777777777777665322 12
Q ss_pred HHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC
Q 009036 388 LVKLGSVNALLGMVNSG--HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG 465 (546)
Q Consensus 388 iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~ 465 (546)
+......+.+..-+.+. .+++.|...|..++..-. ... .....++.++.+............-.++..|..++...
T Consensus 514 ~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e 591 (759)
T KOG0211|consen 514 FFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEW-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE 591 (759)
T ss_pred HhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cch-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH
Confidence 22222222222222222 366777777666664211 111 11223344444443321111222233333333333211
Q ss_pred hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 466 LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 466 ~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
+.....++.+..+..+..+.+|-+++..|..+-.
T Consensus 592 ------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 592 ------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred ------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 1111245667777777777777777666655543
No 236
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=89.63 E-value=0.09 Score=57.84 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=21.5
Q ss_pred CCCCceeCcccccccCCCee----cC---CCccccHHHHHHHHh
Q 009036 41 EPPGEFLCPVSGSLMADPVV----VS---SGHTFERACAHVCKT 77 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~----~~---~G~ty~r~~i~~~~~ 77 (546)
..++.-.|++|..-+.+||- .+ |+|.||..||..|.+
T Consensus 92 K~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~D 135 (1134)
T KOG0825|consen 92 KTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCND 135 (1134)
T ss_pred ccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHH
Confidence 44455566666666666442 23 566666666666654
No 237
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.51 E-value=5.2 Score=46.85 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=98.5
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-----CCchHHHHHh
Q 009036 235 KLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-----EKINKMLIVR 308 (546)
Q Consensus 235 ~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-----~~~nk~~i~~ 308 (546)
-+++.+.-.|...+..|..+.+..+ ++...+. . .|+-++-.++..|...+..|..+|..|.. ++.+-. .
T Consensus 705 s~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~ 779 (1176)
T KOG1248|consen 705 SFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP---A 779 (1176)
T ss_pred HHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc---h
Confidence 3345555667777777777766554 2322222 2 23333333366788888999888887762 221111 1
Q ss_pred cCChHHHHHHHccC--CHHHHHHHHH--HHhhcccccchhhHHhh---cCChHHHHHhhccCCHHHHHHHHHHHHHhhc-
Q 009036 309 SGLVPPIVDVLMAG--SAEAQEHACG--AIFSLALDDQNKTAIGV---LGALPPLLHLLKSDSERTQHDSALALYHLSL- 380 (546)
Q Consensus 309 ~g~l~~Lv~lL~~~--~~~~~~~Aa~--~L~~Ls~~~~~k~~i~~---~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~- 380 (546)
...|...+.++..+ ..+.+..+.. ++..+.. +.+..+.. .+.+..+...|.+.++++++.|+..+.-++.
T Consensus 780 ~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~--e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ--EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Confidence 12455556666555 3333333332 2222221 22222221 3455555566777899999999999888876
Q ss_pred CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036 381 VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS 419 (546)
Q Consensus 381 ~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~ 419 (546)
.++.+..-...-+++.+..++.+.. ++.++-.+|..|+.
T Consensus 858 ~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 858 FPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred CCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4444444444446777777776643 55566666666653
No 238
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.45 E-value=19 Score=40.47 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=54.9
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHH
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAI 347 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i 347 (546)
..|..+..+|.+.++.+.-+|+..|.+|+.++..-+. +...+++++-.. +-.++.-...-|..+.. .++. |
T Consensus 243 ~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~-i 314 (948)
T KOG1058|consen 243 RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEK-I 314 (948)
T ss_pred HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHH-H
Confidence 3567777788777777777777777777766543322 122333333221 22222222222222221 1111 1
Q ss_pred hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036 348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 348 ~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 381 (546)
. .|.+-.++++|...+.++++.++.....|...
T Consensus 315 l-~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 315 L-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred H-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 1 23455556677777777888777777776553
No 239
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.30 E-value=8.3 Score=42.91 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=75.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG 348 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~ 348 (546)
|.+..|+....+++..++...+.+|..+.........-+-.+....|..-|.+..+.+|..|..+|..+-.++.. -
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d----e 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD----E 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----C
Confidence 556666666778899999999999988876322222222234566666667777899999999999998654322 1
Q ss_pred hcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 009036 349 VLGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVK 390 (546)
Q Consensus 349 ~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~ 390 (546)
+..+...++.+++. .++++++.|+ .+++.++.....+++
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDNSTLPCIVE 200 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCcccchhHHH
Confidence 12355667777776 4888888654 455555554444443
No 240
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=89.06 E-value=1.3 Score=40.37 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=75.9
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHHc--cCCHHHHHHHHHHHHHhhcCCchHHHHHhcC
Q 009036 234 QKLKSPQVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLII--SRYTNVQVNAVAALVNLSLEKINKMLIVRSG 310 (546)
Q Consensus 234 ~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL~--s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g 310 (546)
..+..++.+....++..|..+....++....+. ..|+++.++.+.. +.+..++..++.+|..-+.+...|..|.+.
T Consensus 50 ~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~- 128 (157)
T PF11701_consen 50 SLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN- 128 (157)
T ss_dssp HHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-
T ss_pred HHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-
Confidence 344555556778888888888877776555555 6899999999998 778888888888887766676667666655
Q ss_pred ChHHHHHHHccC-CHH-HHHHHHHHHhhc
Q 009036 311 LVPPIVDVLMAG-SAE-AQEHACGAIFSL 337 (546)
Q Consensus 311 ~l~~Lv~lL~~~-~~~-~~~~Aa~~L~~L 337 (546)
+++.|-++++.. +.. +|..|+-.|..|
T Consensus 129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 129 YVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp CHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 799999999654 555 788888877643
No 241
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=88.95 E-value=16 Score=40.43 Aligned_cols=162 Identities=15% Similarity=0.211 Sum_probs=100.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHh----cCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhc
Q 009036 275 RSLIISRYTNVQVNAVAALVNLSLEKINKMLIVR----SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVL 350 (546)
Q Consensus 275 v~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~----~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~ 350 (546)
+..+.....+.+--|+.+|.-+..+...-..+.. ..++..++..+. +++..+..++++|.|+-.++.++..+...
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR 628 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3444456777788888888877776543333332 124555555555 67888889999999998887666666542
Q ss_pred CChHHHHHhh---cc-CCHHHHHHHHHHHHHhhc--CchhHHHHHhcCcHHHHHHHHhC-----c--hHHHHHHHHHHHh
Q 009036 351 GALPPLLHLL---KS-DSERTQHDSALALYHLSL--VKSNRTKLVKLGSVNALLGMVNS-----G--HMTGRVLLILGNL 417 (546)
Q Consensus 351 g~l~~Lv~lL---~~-~~~~~~~~A~~aL~~Ls~--~~~n~~~iv~~Gav~~Lv~lL~~-----~--~~~e~al~~L~nL 417 (546)
+..+...+ +. .+..+....+....|++. ...+-+ .|..+.|..++.. . +...+.+.+|.+|
T Consensus 629 --~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 629 --LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred --HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 22222222 22 344554544445555443 222211 4555655555543 1 2456788999999
Q ss_pred hCCcccHHHHHhCCcHHHHHHHHccC
Q 009036 418 ASCSDGRVAVLDSGGVECLVGMLRKG 443 (546)
Q Consensus 418 a~~~e~r~~i~~~g~i~~Lv~lL~~~ 443 (546)
+..+.+..++.+.--+..+++.++..
T Consensus 703 ~t~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 703 MTVDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred ccccHHHHHHHHhcCHHHHHHHHHHh
Confidence 99888888888877888888888774
No 242
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=88.79 E-value=0.77 Score=29.39 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036 353 LPPLLHLLKSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 353 l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~ 380 (546)
+|.+++++.++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999998864
No 243
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.32 E-value=0.34 Score=48.66 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=32.7
Q ss_pred CCCC--CceeCcccccccCCCeecCCCccccHHHHHHHHh
Q 009036 40 AEPP--GEFLCPVSGSLMADPVVVSSGHTFERACAHVCKT 77 (546)
Q Consensus 40 ~~~p--~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~ 77 (546)
.++| ++=.||||..-=-..|..||||.-|..||.+++-
T Consensus 415 ~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm 454 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM 454 (489)
T ss_pred CCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHh
Confidence 3455 7889999998888889999999999999999764
No 244
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=88.17 E-value=0.44 Score=34.02 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=21.6
Q ss_pred Cccccccc--CCCeec--CCCccccHHHHHHHHhcCCCCCCCCCCCC
Q 009036 48 CPVSGSLM--ADPVVV--SSGHTFERACAHVCKTLGFTPTLVDGTTP 90 (546)
Q Consensus 48 CpI~~~~m--~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 90 (546)
||+|.+-| +|=-.. +||+..||-|..+-.+.+...||-|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78898887 332233 78999999998777665667899998754
No 245
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.81 E-value=39 Score=39.28 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=82.4
Q ss_pred CChHHHHHHHHc------c--CCHHHHHHHHHHHHHhhc---CCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhh
Q 009036 268 PRLLLALRSLII------S--RYTNVQVNAVAALVNLSL---EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFS 336 (546)
Q Consensus 268 ~g~i~~Lv~lL~------s--~~~~v~~~A~~~L~nLs~---~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~ 336 (546)
++.++.++..|. . .++.-.+.|+.++.+|+. ...--+-.++.=.+..+.-.+++...-+|..||+++..
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 367888888776 2 355666778888888763 12221222333344555556678888899999999999
Q ss_pred ccccc-chhhHHhhcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhcCchhH-HHHHhc--CcHHHHHHHHh
Q 009036 337 LALDD-QNKTAIGVLGALPPLLHLLK-SDSERTQHDSALALYHLSLVKSNR-TKLVKL--GSVNALLGMVN 402 (546)
Q Consensus 337 Ls~~~-~~k~~i~~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~~Ls~~~~n~-~~iv~~--Gav~~Lv~lL~ 402 (546)
++..+ ..... -..+++.....|. +.+..++..|+.||..+-.+.+.. .++-.. +.++.|+.+..
T Consensus 489 ~~~~df~d~~~--l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n 557 (1010)
T KOG1991|consen 489 FSSIDFKDPNN--LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN 557 (1010)
T ss_pred HHhccCCChHH--HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence 88443 22221 1345666677777 567789999999999987765433 333332 34444444443
No 246
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.80 E-value=11 Score=43.50 Aligned_cols=177 Identities=15% Similarity=0.098 Sum_probs=107.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc---CChHHHHHHHH-ccCCHHHHHHHHHHHHHhhcC-CchHH
Q 009036 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT---PRLLLALRSLI-ISRYTNVQVNAVAALVNLSLE-KINKM 304 (546)
Q Consensus 230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~---~g~i~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~-~~nk~ 304 (546)
+.+-..+.+.+|..+.+|++.+.....+.. ...+ .|.+..++... ...+..+...|+..|..|+.. ...-.
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 344455678899999999999998876532 2222 23444444433 345667777788888877764 22222
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-Cc-
Q 009036 305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-VK- 382 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~- 382 (546)
.+ ..+.++.|++-+......++..+..++....... .....++.+..+++++++..+......+-.... ..
T Consensus 332 ~~-~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 332 KY-AKNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HH-HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 22 2357888999998887777777766665543311 123466777888899999998887665554433 22
Q ss_pred hhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHh
Q 009036 383 SNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNL 417 (546)
Q Consensus 383 ~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nL 417 (546)
.+...-.-.++++.++....+. +++..++.++.-+
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 2222212224666666666553 3666655555444
No 247
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.66 E-value=7.3 Score=42.77 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=67.7
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKM 304 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~ 304 (546)
...+..++..-+ ++.++..-|...|..+.+.-+.... .+|..++.|+...|..++..|+..|-.++.+ ++...
T Consensus 22 ~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 22 EEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp HHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 356677777765 5677888888999988887665543 3688999999999999999999999999986 45554
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhc
Q 009036 305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSL 337 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~L 337 (546)
+ ++..|+.+|.+.++.....+-.+|..|
T Consensus 96 k-----vaDvL~QlL~tdd~~E~~~v~~sL~~l 123 (556)
T PF05918_consen 96 K-----VADVLVQLLQTDDPVELDAVKNSLMSL 123 (556)
T ss_dssp H-----HHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4 356788889887655544444444443
No 248
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.48 E-value=11 Score=42.99 Aligned_cols=220 Identities=11% Similarity=0.067 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhhHH-hhcCChHHHH
Q 009036 281 RYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAI-GVLGALPPLL 357 (546)
Q Consensus 281 ~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i-~~~g~l~~Lv 357 (546)
..+...-.+..++...+.. ..+...+ . ..+...+..+. +..+-++..|+++++.-+... ... ..++.+..|.
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~---vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLL-Q-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVK---VLLSLQPMILDGLL 536 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHH-H-HHHHHHHHhhccCCCCchhHHHHHHHHhccCce---eccccchHHHHHHH
Confidence 3444444566666544432 2222211 1 12333444444 335667778888887766211 111 1256778888
Q ss_pred HhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC----chHHHHHHHHHHHhhCCcccHHHHHhCCcH
Q 009036 358 HLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS----GHMTGRVLLILGNLASCSDGRVAVLDSGGV 433 (546)
Q Consensus 358 ~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~----~~~~e~al~~L~nLa~~~e~r~~i~~~g~i 433 (546)
++....+.++......+|+..+..+.-.....+....|.++.++.. +-+...+-.++..|+...++- .=+..-.|
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g~m~e~~i 615 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-GPMQERLI 615 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-cchHHHHH
Confidence 8887777888778888999999877666666677788887777643 337777777777777522211 11223578
Q ss_pred HHHHHHHccCCC-CCHHHHHHHHHHHHHHhcCC-hhhHHHHHHCCcHHHHHHH-HhcCCHHHHHHHHHHHHHhhcCC
Q 009036 434 ECLVGMLRKGTE-LSESTQESCVSVLYALSHGG-LRFKGLAAAAGMAEVLMRM-ERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 434 ~~Lv~lL~~~~~-~s~~~~e~Av~~L~~L~~~~-~~~~~~~~~~g~v~~L~~l-l~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
|.++..|..... .......-|+.+|..+.+.. +...+.+.. -+++.+.+. +++++..+-..+.++|+.+-...
T Consensus 616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 999999987421 12445566777777666642 233333222 156666665 78888999999999999987653
No 249
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.37 E-value=13 Score=42.22 Aligned_cols=218 Identities=16% Similarity=0.079 Sum_probs=125.1
Q ss_pred HHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHH
Q 009036 277 LIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPL 356 (546)
Q Consensus 277 lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~L 356 (546)
.+.++-+.++..++..|..+....+....+...+++......|++.++-+--+|...+..|+.. .....++.|
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL 807 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDL 807 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence 3444556677788888888887666666677788999999999999888888888877777653 223455555
Q ss_pred HHhhccC---C-HHHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHh
Q 009036 357 LHLLKSD---S-ERTQHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLD 429 (546)
Q Consensus 357 v~lL~~~---~-~~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~ 429 (546)
.+.-.+. . .+.+.....++.++.. -.+...+..+ -.+...+..+.+++ .+..+++.|.+||.-...+-.=.=
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 5532221 1 2333333356665544 2222222221 23344444445544 688899999999863321111011
Q ss_pred CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHC---CcHHHHHHHHhcC-CHHHHHHHHHHHHHhh
Q 009036 430 SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAA---GMAEVLMRMERVG-SEHVKEKAKRMLELMK 504 (546)
Q Consensus 430 ~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~---g~v~~L~~ll~~~-s~~~k~~A~~lL~~L~ 504 (546)
+.+...++.+...+ ++...+..|+..+..+-.+...-.-.+.++ .....+...+... .+.+|-+|...|..+-
T Consensus 887 ~ev~~~Il~l~~~d--~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 887 HEVLQLILSLETTD--GSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHccC--CchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 23455566666554 567889999999888776532111111111 1334444444433 4556666666665553
No 250
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.35 E-value=3.9 Score=40.62 Aligned_cols=186 Identities=19% Similarity=0.133 Sum_probs=109.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhc--CChHHHHHhhcc----CCHHHHHHHHHHHHHhhcCchhHH
Q 009036 313 PPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVL--GALPPLLHLLKS----DSERTQHDSALALYHLSLVKSNRT 386 (546)
Q Consensus 313 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~l~~Lv~lL~~----~~~~~~~~A~~aL~~Ls~~~~n~~ 386 (546)
..+..++.....+.+--+..+++-+..+......+... +....+..++.. ..+..+..++++|+|+-.+...+.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~ 145 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ 145 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence 33444444444444555556666555555443333322 124444444433 367788889999999998888888
Q ss_pred HHHhc-C-cHHHHHHHHhC------chHHHHHHHHHHHhhCCc-ccH-HHHHhCCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036 387 KLVKL-G-SVNALLGMVNS------GHMTGRVLLILGNLASCS-DGR-VAVLDSGGVECLVGMLRKGTELSESTQESCVS 456 (546)
Q Consensus 387 ~iv~~-G-av~~Lv~lL~~------~~~~e~al~~L~nLa~~~-e~r-~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~ 456 (546)
.+.+. + .+...+..+.. ..++-.+..++.|++..- ..+ ..=.....+..+++.+.... .++++...++.
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~-~d~Ea~~R~Lv 224 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREE-SDEEALYRLLV 224 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCH-TSHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcccc-CCHHHHHHHHH
Confidence 88776 3 34433333322 237777888899987521 011 00000113445555333321 46888999999
Q ss_pred HHHHHhcCChhhHHHHHHCCcHHHHHHHH-hcCCHHHHHHHHHH
Q 009036 457 VLYALSHGGLRFKGLAAAAGMAEVLMRME-RVGSEHVKEKAKRM 499 (546)
Q Consensus 457 ~L~~L~~~~~~~~~~~~~~g~v~~L~~ll-~~~s~~~k~~A~~l 499 (546)
+|.+|+..+......+...|+...+.... ....+++++.+.++
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 99999977766666666666666666664 45578899888764
No 251
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.33 E-value=0.18 Score=48.91 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=39.6
Q ss_pred CceeCcccccccCCCe----------ecCCCccccHHHHHHHHhc-CCCCCCCCCCCCCC
Q 009036 44 GEFLCPVSGSLMADPV----------VVSSGHTFERACAHVCKTL-GFTPTLVDGTTPDF 92 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV----------~~~~G~ty~r~~i~~~~~~-~~~~cp~~~~~~~~ 92 (546)
++=.|-+|++=+-+-| .++|+|.|---||.-|--- ...+||-|.+..+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 6668999999888777 6899999999999999654 45589988776543
No 252
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.09 E-value=12 Score=41.92 Aligned_cols=96 Identities=19% Similarity=0.212 Sum_probs=56.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcC
Q 009036 231 YFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSG 310 (546)
Q Consensus 231 ~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g 310 (546)
.+-+.|++++.-+|-..++-|..|-. ..++ ..++|.+...|.+.+..++.+|.-++..+-... ..+. ..
T Consensus 103 a~RkDLQHPNEyiRG~TLRFLckLkE------~ELl-epl~p~IracleHrhsYVRrNAilaifsIyk~~---~~L~-pD 171 (948)
T KOG1058|consen 103 AYRKDLQHPNEYIRGSTLRFLCKLKE------PELL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---EHLI-PD 171 (948)
T ss_pred HHhhhccCchHhhcchhhhhhhhcCc------HHHh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---hhhc-CC
Confidence 44455667776666666665554322 1111 135677777788999999999998888765431 1111 12
Q ss_pred ChHHHHHHHc-cCCHHHHHHHHHHHhhc
Q 009036 311 LVPPIVDVLM-AGSAEAQEHACGAIFSL 337 (546)
Q Consensus 311 ~l~~Lv~lL~-~~~~~~~~~Aa~~L~~L 337 (546)
+-+.+-+.|. ..++..+.+|--.|...
T Consensus 172 apeLi~~fL~~e~DpsCkRNAFi~L~~~ 199 (948)
T KOG1058|consen 172 APELIESFLLTEQDPSCKRNAFLMLFTT 199 (948)
T ss_pred hHHHHHHHHHhccCchhHHHHHHHHHhc
Confidence 3344444554 34777777776555543
No 253
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=87.09 E-value=46 Score=39.04 Aligned_cols=245 Identities=15% Similarity=0.082 Sum_probs=135.3
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
..++.|+..|++.+..++..|++-+..++...+ ..++ ..+|...++++.- ++...-..|+.+|..|+..---...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 455677777888999999999999999998876 2222 2356666664443 3455566888889888753211111
Q ss_pred HHhcCChHHHHHHHcc--------CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHH-----HhhccCCHHHHHHHH
Q 009036 306 IVRSGLVPPIVDVLMA--------GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLL-----HLLKSDSERTQHDSA 372 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~--------~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv-----~lL~~~~~~~~~~A~ 372 (546)
..+ .++|.++.-|.- ....+|..|+-+++.++...+.... .+.+..|. ..+-+.....++.|.
T Consensus 417 ~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l---~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 417 LLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL---KPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred HHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh---hHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 111 245555555531 1356888899999988765433210 11222222 223334566777777
Q ss_pred HHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcc-cHHHHHh-CCcHHHHHHHHccC--CCCCH
Q 009036 373 LALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSD-GRVAVLD-SGGVECLVGMLRKG--TELSE 448 (546)
Q Consensus 373 ~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e-~r~~i~~-~g~i~~Lv~lL~~~--~~~s~ 448 (546)
.|+...-. +.|-+|.=++++..-+. -++ .+.+.|-. -...+.+ .|....+++-|... ..-+.
T Consensus 493 AAlqE~VG---------R~~n~p~Gi~Lis~~dy--~sV---~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~ 558 (1133)
T KOG1943|consen 493 AALQENVG---------RQGNFPHGISLISTIDY--FSV---TNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDV 558 (1133)
T ss_pred HHHHHHhc---------cCCCCCCchhhhhhcch--hhh---hhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccH
Confidence 77765432 22333333333332220 011 11111111 1122333 45555555544332 12468
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHH
Q 009036 449 STQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAK 497 (546)
Q Consensus 449 ~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~ 497 (546)
..+|.+..+|..|....+ .....+.++.|+......+...+..+.
T Consensus 559 ~irelaa~aL~~Ls~~~p----k~~a~~~L~~lld~~ls~~~~~r~g~~ 603 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEP----KYLADYVLPPLLDSTLSKDASMRHGVF 603 (1133)
T ss_pred HHHHHHHHHHHHHHHhhH----HhhcccchhhhhhhhcCCChHHhhhhH
Confidence 999999999999875332 222335677888877777777665443
No 254
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.88 E-value=0.19 Score=36.43 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=36.1
Q ss_pred eCcccccccCCCeecCCCc-cccHHHHHHHHhcCCCCCCCCCCCC
Q 009036 47 LCPVSGSLMADPVVVSSGH-TFERACAHVCKTLGFTPTLVDGTTP 90 (546)
Q Consensus 47 ~CpI~~~~m~dPV~~~~G~-ty~r~~i~~~~~~~~~~cp~~~~~~ 90 (546)
.|-||.+-=-|-|+--||| -.|..|=.+.+...+..||.|+.++
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 4999999999999999999 6788887775555777999997653
No 255
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=86.78 E-value=1.7 Score=39.62 Aligned_cols=141 Identities=19% Similarity=0.103 Sum_probs=83.3
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-ch-hhH
Q 009036 271 LLALRSLII--SRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QN-KTA 346 (546)
Q Consensus 271 i~~Lv~lL~--s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~-k~~ 346 (546)
+..++..|. ....+++..+.-++..+- +..+....+. +-+.+-..+..++.+....+..+|..|--.. +. ...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 344555444 345667777777776652 2223222211 2233333444443445556666666654332 33 444
Q ss_pred HhhcCChHHHHHhhc--cCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch----HHHHHHHHHH
Q 009036 347 IGVLGALPPLLHLLK--SDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH----MTGRVLLILG 415 (546)
Q Consensus 347 i~~~g~l~~Lv~lL~--~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al~~L~ 415 (546)
+...|.++.++.++. .++......++.+|..-|.....|..+. ..+++.|-+++.... ++..|+-+|.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 456889999999998 6788888888888888777655555544 457899999985432 4566655554
No 256
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.66 E-value=9.3 Score=40.74 Aligned_cols=110 Identities=19% Similarity=0.124 Sum_probs=74.4
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cc--------h-----HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHh
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSLE-KI--------N-----KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIF 335 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~--------n-----k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~ 335 (546)
.+..|+.+|.+ +++...|+..+.-|..+ ++ + |.++.. ..+|.|++-.+..+.+.+.+-..+|.
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 45666666655 55566677776666554 21 1 222222 35778888888777778888888888
Q ss_pred hcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc
Q 009036 336 SLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHLSLVK 382 (546)
Q Consensus 336 ~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~ 382 (546)
++..+-.....+.+ ...+|.|++-|..++.+++..++.+|..+....
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 87664443333333 468888999998889999999999999887654
No 257
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.46 E-value=2.8 Score=34.55 Aligned_cols=71 Identities=24% Similarity=0.266 Sum_probs=57.5
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE 299 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 299 (546)
.+++..+..|.++.+-+|-.++..|+.+..... .......+++..+...|.++|+-+--+|+..|..|+..
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 467788889999999999999999999988765 22222356788888889999999999999999888753
No 258
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.19 E-value=3.7 Score=36.82 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=63.9
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE 299 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~ 299 (546)
.+++..|.++|+++++.+|..|+..|..+.+.+ ......+.+.+++..|+.++. ..+..++..++..+...+..
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999984 457778888999999999987 46889999999998877653
No 259
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=86.01 E-value=49 Score=34.79 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC-----CHHHHHHHHHHHHHhhc-CCchHHHH-HhcCCh
Q 009036 240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR-----YTNVQVNAVAALVNLSL-EKINKMLI-VRSGLV 312 (546)
Q Consensus 240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~-----~~~v~~~A~~~L~nLs~-~~~nk~~i-~~~g~l 312 (546)
+..+..+|++.|.++...+...|....++.....+...+... -..++..=+..|.-|.. +...|.++ ++.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 457788999999999999999999999888777777765421 11222222333333332 34555555 477999
Q ss_pred HHHHHHHccC---------C---HH---HHHHHHHHHhhccccc
Q 009036 313 PPIVDVLMAG---------S---AE---AQEHACGAIFSLALDD 341 (546)
Q Consensus 313 ~~Lv~lL~~~---------~---~~---~~~~Aa~~L~~Ls~~~ 341 (546)
+.+..+|.+. . ++ .-..++.+++|+..+.
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 9999998642 1 12 2345566677776654
No 260
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=85.73 E-value=0.55 Score=44.68 Aligned_cols=56 Identities=9% Similarity=-0.017 Sum_probs=41.2
Q ss_pred ceeCcccccccCCCeec-CCCccccHHHHHHHHhc-CCCCCCC--CCCCCCCCCCcccHH
Q 009036 45 EFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTL-GFTPTLV--DGTTPDFSTVIPNLA 100 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~-~~~~cp~--~~~~~~~~~l~pn~~ 100 (546)
+.+|||+++...-|++- .|.|.|++..|...++. -.+-||+ |.+......+.-.+-
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~I 248 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHI 248 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHH
Confidence 45799999999999885 99999999999998773 2345664 655555545554433
No 261
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=85.37 E-value=0.15 Score=39.74 Aligned_cols=46 Identities=24% Similarity=0.218 Sum_probs=21.8
Q ss_pred ceeCcccccccC-C---Ceec----CCCccccHHHHHHHHhc---CC---C----CCCCCCCCC
Q 009036 45 EFLCPVSGSLMA-D---PVVV----SSGHTFERACAHVCKTL---GF---T----PTLVDGTTP 90 (546)
Q Consensus 45 ~~~CpI~~~~m~-d---PV~~----~~G~ty~r~~i~~~~~~---~~---~----~cp~~~~~~ 90 (546)
+..|+||...+. + |+++ .||++|=..|+.+||.. .+ . .||.|..++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 467999998754 2 5554 68999999999999963 11 1 499987654
No 262
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=85.35 E-value=38 Score=32.98 Aligned_cols=134 Identities=21% Similarity=0.143 Sum_probs=81.7
Q ss_pred HHHHHH-HHccCCHHHHHHHHHHHHHhhcCC-chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh
Q 009036 271 LLALRS-LIISRYTNVQVNAVAALVNLSLEK-INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG 348 (546)
Q Consensus 271 i~~Lv~-lL~s~~~~v~~~A~~~L~nLs~~~-~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~ 348 (546)
++.|+. +-+..+++.+...+..|-.++.+. .+... ++..|..+...+..+.+..+.+.+..+...++- ..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDR-HF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HH--
Confidence 344444 445678899999999999998876 44433 345566666677777766677777766543321 10
Q ss_pred hcCChHHHHHhh--------ccC--CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHH-hCch--HHHHHHHHHH
Q 009036 349 VLGALPPLLHLL--------KSD--SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMV-NSGH--MTGRVLLILG 415 (546)
Q Consensus 349 ~~g~l~~Lv~lL--------~~~--~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL-~~~~--~~e~al~~L~ 415 (546)
+.++.++..+ .++ .-+.....+.++..+|...++ .-...++.+..+| .+.+ .+..++..|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3344444331 111 223334445678888886655 2224577788888 4432 7788899999
Q ss_pred Hhh
Q 009036 416 NLA 418 (546)
Q Consensus 416 nLa 418 (546)
.||
T Consensus 148 ~Lc 150 (234)
T PF12530_consen 148 PLC 150 (234)
T ss_pred HHH
Confidence 998
No 263
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=84.95 E-value=22 Score=42.11 Aligned_cols=222 Identities=17% Similarity=0.127 Sum_probs=123.0
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHhhcC--CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccc-cc---ch
Q 009036 271 LLALRSLIIS-RYTNVQVNAVAALVNLSLE--KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL-DD---QN 343 (546)
Q Consensus 271 i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~--~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~---~~ 343 (546)
+..|...+++ ...+.+.+|+..|..|+.. ++++. .-++|-++.++.+....+|..|+.+|..+.. .. ..
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 4445555544 3556778899999999874 44442 2489999999999999999999999876533 22 22
Q ss_pred hhHHhhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcC------------------chh------------HHHHHhcC
Q 009036 344 KTAIGVLGALPPLLHLLKS-DSERTQHDSALALYHLSLV------------------KSN------------RTKLVKLG 392 (546)
Q Consensus 344 k~~i~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~------------------~~n------------~~~iv~~G 392 (546)
-+.|.-.=.+|.|-.++.+ ....++..=+..|..|+.. ..| ...++. +
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~-~ 578 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH-T 578 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH-H
Confidence 2333333467777778776 3333433333334333321 000 001110 1
Q ss_pred cHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHh---CC-cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc--C
Q 009036 393 SVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLD---SG-GVECLVGMLRKGTELSESTQESCVSVLYALSH--G 464 (546)
Q Consensus 393 av~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~---~g-~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~--~ 464 (546)
+-...+.+|.+.. ++..-+..|.-||. .+.+ .+ .+..|+..|.. .+...+-.=..-+..+|. +
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLND---kDw~LR~aFfdsI~gvsi~VG 649 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLND---KDWRLRGAFFDSIVGVSIFVG 649 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcC---ccHHHHHHHHhhccceEEEEe
Confidence 1122233444433 34434444555553 2222 12 45666666665 223333222222222222 1
Q ss_pred ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcccc
Q 009036 465 GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEE 511 (546)
Q Consensus 465 ~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~ 511 (546)
. .-.+++.+|.|.+-+.++.+.+-.+|.+.|..|.+..--++
T Consensus 650 ~-----rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K 691 (1431)
T KOG1240|consen 650 W-----RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK 691 (1431)
T ss_pred e-----eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch
Confidence 1 11234567888888999999999999999999998765444
No 264
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=84.74 E-value=0.6 Score=34.19 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=34.1
Q ss_pred eeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 009036 46 FLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFS 93 (546)
Q Consensus 46 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 93 (546)
..|=.|...=...++++|||-.|+.|..- +...-||.|+.++...
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCC
Confidence 34677777778899999999999999522 2344799999887653
No 265
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=0.57 Score=47.60 Aligned_cols=47 Identities=23% Similarity=0.209 Sum_probs=36.1
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCC
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTP 90 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 90 (546)
.+.|..-.|-||.+=..+-|.+||||+.| |+.-. +....||.|++.+
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs--~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS--KHLPQCPVCRQRI 346 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHH--hhCCCCchhHHHH
Confidence 34566667999999999999999999998 76443 2344599998754
No 266
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=84.49 E-value=2.8 Score=40.09 Aligned_cols=105 Identities=19% Similarity=0.159 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCC--CCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHH
Q 009036 407 TGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGT--ELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMR 483 (546)
Q Consensus 407 ~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~--~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ 483 (546)
...|+.+|-.+++.++.+..++++..--.|...|...+ ..-+-.+-.+++++..|..+ +..+-.......+++.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 45688889999999999999998764444444443321 12344677889999999884 5566666777789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhhcCCcccc
Q 009036 484 MERVGSEHVKEKAKRMLELMKGRAEEEE 511 (546)
Q Consensus 484 ll~~~s~~~k~~A~~lL~~L~~~~~~~~ 511 (546)
++..|++.-|..|..++..+-.++.+-+
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLq 224 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQ 224 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHH
Confidence 9999999999999999998877655444
No 267
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.47 E-value=0.68 Score=47.29 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=44.3
Q ss_pred ceeCcccccccCCCeecCCCccccHHHHHHHHhc-CCCCCCCCCCCCCCCCCccc
Q 009036 45 EFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL-GFTPTLVDGTTPDFSTVIPN 98 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-~~~~cp~~~~~~~~~~l~pn 98 (546)
...|.+++..|.|||-+..|..||-..|--|++. |..|| +++++...+|++=
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g~nP~--tG~kl~~~dLIkL 92 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHGTNPI--TGQKLDGKDLIKL 92 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHHcCCCCC--CCCccccccceee
Confidence 4579999999999999999999999999999985 45566 6788888787763
No 268
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.39 E-value=5.7 Score=35.09 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=62.9
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh-hhHHhhcCChHHHHHHHHcc---CCHHHHHHHHHHHHHhhcC
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREE-TRVSLCTPRLLLALRSLIIS---RYTNVQVNAVAALVNLSLE 299 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~l~~~g~i~~Lv~lL~s---~~~~v~~~A~~~L~nLs~~ 299 (546)
..++..|.++|+++++.+|..|+..|-.+.+.+.. ....+....++.-|+.++.. .+..++..++..|.+.+..
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999998765 66777777888889999875 4889999999999887653
No 269
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.16 E-value=5.2 Score=35.94 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=64.4
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcC
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLE 299 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~ 299 (546)
..++..|.++|.+.++.+|..|+..|..+.+.+. .....+.+..++..|+.++.. .+..++..++..|...+..
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999866 466678889999999999987 7899999999998887653
No 270
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.13 E-value=65 Score=34.66 Aligned_cols=160 Identities=16% Similarity=0.022 Sum_probs=100.6
Q ss_pred CCCchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHH-HHHccCCHHHHHHHHHHHHHhhcCCc
Q 009036 223 PNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALR-SLIISRYTNVQVNAVAALVNLSLEKI 301 (546)
Q Consensus 223 ~~~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv-~lL~s~~~~v~~~A~~~L~nLs~~~~ 301 (546)
++-.+.+..+.++.++++...+.-|++.|.+.+...+.-....... .+..++ .+.+..+.+|+-.++..|..+...-.
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 3445667777778888888889999999999988755443333332 234444 45556678899888888877655433
Q ss_pred hHHHHHhcCCh---HHHHHHHccCCHHHHHHHHHHHhhcccccc--hhhHHhh--cCChHHHHHhhccCCHHHHHHHHHH
Q 009036 302 NKMLIVRSGLV---PPIVDVLMAGSAEAQEHACGAIFSLALDDQ--NKTAIGV--LGALPPLLHLLKSDSERTQHDSALA 374 (546)
Q Consensus 302 nk~~i~~~g~l---~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~a 374 (546)
+... +.+.+ -.+..++.+.++++|..|..++..|+.... .+..+.+ .+...+|+-.|.+.++.+ ..|+..
T Consensus 333 ~~~l--~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~ 409 (533)
T KOG2032|consen 333 NDDL--ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRS 409 (533)
T ss_pred hcch--hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHH
Confidence 3322 12223 344456677899999999888888776542 2333332 344555666666677766 556666
Q ss_pred HHHhhcCchhHH
Q 009036 375 LYHLSLVKSNRT 386 (546)
Q Consensus 375 L~~Ls~~~~n~~ 386 (546)
....|.-.-.++
T Consensus 410 ~~~~c~p~l~rk 421 (533)
T KOG2032|consen 410 ELRTCYPNLVRK 421 (533)
T ss_pred HHHhcCchhHHH
Confidence 666665443343
No 271
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=83.84 E-value=4.7 Score=38.68 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-----cCCHHHHHHHHHHHHHhhcCC--chHHHHHhcCChHH
Q 009036 242 HEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-----SRYTNVQVNAVAALVNLSLEK--INKMLIVRSGLVPP 314 (546)
Q Consensus 242 ~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-----s~~~~v~~~A~~~L~nLs~~~--~nk~~i~~~g~l~~ 314 (546)
.-...|+..|.-++.+ ++.|..+.++.+--.|..+|. +.....+..++.++..|..++ ..-..+....++|.
T Consensus 115 nRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 3345677777777765 678888887765444445553 234567788999999988864 33444556789999
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcccccchhhHH
Q 009036 315 IVDVLMAGSAEAQEHACGAIFSLALDDQNKTAI 347 (546)
Q Consensus 315 Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i 347 (546)
.++++..|+.-.+..|+.++..+..++..-..|
T Consensus 194 cLrIme~gSElSktvaifI~qkil~dDvGLqYi 226 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQYI 226 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHH
Confidence 999999998888888888887776666543333
No 272
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=83.75 E-value=7.8 Score=44.32 Aligned_cols=189 Identities=15% Similarity=0.152 Sum_probs=111.2
Q ss_pred CCCCchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh--hhH------Hhhc----CChHHHHHHHHccCCHHHHHHH
Q 009036 222 HPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREE--TRV------SLCT----PRLLLALRSLIISRYTNVQVNA 289 (546)
Q Consensus 222 ~~~~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~------~l~~----~g~i~~Lv~lL~s~~~~v~~~A 289 (546)
++.+.+....++..|+.++.. -.+.+.+.-+..+++. .|. .+.+ ...+|.|+..........+.+-
T Consensus 810 ~~~s~~ia~klld~Ls~~~~g--~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~y 887 (1030)
T KOG1967|consen 810 HPESSEIAEKLLDLLSGPSTG--SPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNY 887 (1030)
T ss_pred CcccchHHHHHHHhcCCcccc--chHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHH
Confidence 333456667778877653321 1233333333333221 111 1222 2468888887775555566666
Q ss_pred HHHHHHhhcCCchHHHHH-h-cCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCC---
Q 009036 290 VAALVNLSLEKINKMLIV-R-SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDS--- 364 (546)
Q Consensus 290 ~~~L~nLs~~~~nk~~i~-~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~--- 364 (546)
+.+|.+.-.+-.. ..+. + ...+|.|++.|.-.+..+|..+..+|.-+....+.-..-.....+|.++.+=.+.+
T Consensus 888 l~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~ 966 (1030)
T KOG1967|consen 888 LEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNM 966 (1030)
T ss_pred HHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcch
Confidence 6666665543222 2222 1 24788899999999999998888888766443332111112345666666655533
Q ss_pred HHHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHH
Q 009036 365 ERTQHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLI 413 (546)
Q Consensus 365 ~~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~ 413 (546)
..++..|+.+|..|.. .+.+.-.-.+..++..|+..|.++. +++.|..+
T Consensus 967 ~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 967 MVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 6788899999999987 4443333344467888999998865 77777654
No 273
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.47 E-value=12 Score=43.51 Aligned_cols=241 Identities=16% Similarity=0.075 Sum_probs=145.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc---CCchHHHHHhcCCh
Q 009036 236 LKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL---EKINKMLIVRSGLV 312 (546)
Q Consensus 236 L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~---~~~nk~~i~~~g~l 312 (546)
|++.+.+.|.+.+..+..+....++|.....+.--+|.++.-+..-...+|...+.+|.--.. +-..++ +
T Consensus 476 LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqE-------L 548 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQE-------L 548 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHH-------H
Confidence 477788889999999999988889998888888889999888876666666665555432111 111121 2
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHhhc-ccccchhhHHhhcCChHHHHHhhccC---------------------CHH---
Q 009036 313 PPIVDVLMAG-SAEAQEHACGAIFSL-ALDDQNKTAIGVLGALPPLLHLLKSD---------------------SER--- 366 (546)
Q Consensus 313 ~~Lv~lL~~~-~~~~~~~Aa~~L~~L-s~~~~~k~~i~~~g~l~~Lv~lL~~~---------------------~~~--- 366 (546)
-.|+-+|+.. +..++.........| +.+...|..+.+-|.++.|...|+.. ++.
T Consensus 549 lSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~ 628 (2799)
T KOG1788|consen 549 LSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQ 628 (2799)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhh
Confidence 3455566655 334443333333333 44556677777888888877665430 100
Q ss_pred -----------------------HHHH------HHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHH
Q 009036 367 -----------------------TQHD------SALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGN 416 (546)
Q Consensus 367 -----------------------~~~~------A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~n 416 (546)
+... ...+|..|.. +.+|+..+.++.++..++.++-+...+...+.++..
T Consensus 629 ~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflindehRSslLrivsc 708 (2799)
T KOG1788|consen 629 HLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLINDEHRSSLLRIVSC 708 (2799)
T ss_pred ccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeechHHHHHHHHHHHH
Confidence 0000 1123444433 456777777777777777777666667777777777
Q ss_pred hhCCcccHHHHHhCCcHHHHHHHHccCCCC---------CHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHh
Q 009036 417 LASCSDGRVAVLDSGGVECLVGMLRKGTEL---------SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMER 486 (546)
Q Consensus 417 La~~~e~r~~i~~~g~i~~Lv~lL~~~~~~---------s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~ 486 (546)
|-..+.. -+.+.-+-.+|+.|.++... ........+++||.+..-+...+..+.+++++..|...+.
T Consensus 709 Litvdpk---qvhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 709 LITVDPK---QVHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLH 784 (2799)
T ss_pred HhccCcc---cccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHH
Confidence 6643221 11223445667777664211 1223445567778777655567777888888877766543
No 274
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=83.09 E-value=0.77 Score=45.94 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=34.2
Q ss_pred CCceeCcccccccC--CCee--cCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMA--DPVV--VSSGHTFERACAHVCKTLGFTPTLVDGTTPDFST 94 (546)
Q Consensus 43 p~~~~CpI~~~~m~--dPV~--~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~ 94 (546)
.+++ ||+|.+-|. |--. -+||...||-|...--+.-+.-||-|+......+
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 4455 999999874 3333 3789999999964433333457888887766544
No 275
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=83.04 E-value=21 Score=38.05 Aligned_cols=187 Identities=13% Similarity=0.129 Sum_probs=108.5
Q ss_pred ChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhh-ccCCHHHHHHHH----HHHHHhhc-Cch
Q 009036 311 LVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLL-KSDSERTQHDSA----LALYHLSL-VKS 383 (546)
Q Consensus 311 ~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL-~~~~~~~~~~A~----~aL~~Ls~-~~~ 383 (546)
.+..++.+..+. +...+..++..|..|..--.... .-...+..+...+ .......+..++ |....|.. .+.
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 556666665444 57777777777776643210000 0012233333333 222333333333 44444433 221
Q ss_pred hHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCC-cc--------cHHHHHh----CCcHHHHHHHHccCCCCCHHH
Q 009036 384 NRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASC-SD--------GRVAVLD----SGGVECLVGMLRKGTELSEST 450 (546)
Q Consensus 384 n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~-~e--------~r~~i~~----~g~i~~Lv~lL~~~~~~s~~~ 450 (546)
.....+..|+++|.++.+...+...+.-|... ++ +..-+.. ...+|.|++..+.. +...
T Consensus 268 -----~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~---~~~~ 339 (415)
T PF12460_consen 268 -----LATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA---DDEI 339 (415)
T ss_pred -----hHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc---Chhh
Confidence 12235677888998877777788888777765 21 1111222 23566676666663 3457
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 451 QESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 451 ~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
+.+.+.+|..+..+-+.-.-.-.-...+|.|++-+...++.++..+..+|..+....
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 888888888888754321111111237889999999999999999999999988765
No 276
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=82.80 E-value=46 Score=39.07 Aligned_cols=242 Identities=14% Similarity=0.093 Sum_probs=131.0
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHH
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAI 347 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i 347 (546)
+++..|+..|.+.|..++.-|+.-+..+..... ..+++ .+|..+++++.-. ++..-..|+-+|..|+...-.....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 467777777888899999999999988877533 22332 4677778866544 3566668888888886543111110
Q ss_pred hhcCChHHHHHhhccC--------CHHHHHHHHHHHHHhhcCch-h-HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHH
Q 009036 348 GVLGALPPLLHLLKSD--------SERTQHDSALALYHLSLVKS-N-RTKLVKLGSVNALLGMVNSGH--MTGRVLLILG 415 (546)
Q Consensus 348 ~~~g~l~~Lv~lL~~~--------~~~~~~~A~~aL~~Ls~~~~-n-~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~ 415 (546)
. ..+++.+++-|.-+ ...++..|+-++|.++...+ + -+.++..=+-..|+..+-+.+ .+..|.++|-
T Consensus 418 l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 418 L-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred H-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 0 12344444444221 34578888889999876322 2 122222212223334445555 5555555554
Q ss_pred HhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHH-HhcCCHHHHH
Q 009036 416 NLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRM-ERVGSEHVKE 494 (546)
Q Consensus 416 nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~l-l~~~s~~~k~ 494 (546)
.... ..|-.|.=+.++...+--+-..+.++-..|..--...+..+.- ++..|+.. +.+-+..+|+
T Consensus 497 E~VG---------R~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~-----~f~~L~t~Kv~HWd~~ire 562 (1133)
T KOG1943|consen 497 ENVG---------RQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREP-----VFNHLLTKKVCHWDVKIRE 562 (1133)
T ss_pred HHhc---------cCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHH-----HHHHHHhcccccccHHHHH
Confidence 3221 1121111111221110001122344433332222222222222 22333333 6677999999
Q ss_pred HHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036 495 KAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS 528 (546)
Q Consensus 495 ~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (546)
-|+..|..|+...++.-.+...-.++++....-.
T Consensus 563 laa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~ 596 (1133)
T KOG1943|consen 563 LAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDA 596 (1133)
T ss_pred HHHHHHHHHHHhhHHhhcccchhhhhhhhcCCCh
Confidence 9999999999877776666677777777776655
No 277
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.65 E-value=0.73 Score=48.46 Aligned_cols=51 Identities=12% Similarity=0.000 Sum_probs=37.0
Q ss_pred CCCceeCccccccc-----------------CCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 42 PPGEFLCPVSGSLM-----------------ADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 42 ~p~~~~CpI~~~~m-----------------~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
+-..--|+||+.-. ++=.++||.|.|-|.|+++|.+.-.--||+|+.++++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34445699997531 1234569999999999999988444479999887754
No 278
>PRK14707 hypothetical protein; Provisional
Probab=82.62 E-value=1.2e+02 Score=38.75 Aligned_cols=243 Identities=18% Similarity=0.067 Sum_probs=117.9
Q ss_pred CCCchhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHH-hhcCC
Q 009036 223 PNSNEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVN-LSLEK 300 (546)
Q Consensus 223 ~~~~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~n-Ls~~~ 300 (546)
.++...+-.+++.+. =++......|+..|.......+..+..|-..|+-..|-.+.+-++..+...|+..|.. +..+.
T Consensus 201 ~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~ 280 (2710)
T PRK14707 201 AMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDP 280 (2710)
T ss_pred ccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH
Confidence 445566667777662 2233334455555554433334555555555555555555555677677777766653 44443
Q ss_pred chHHHHHhcCChHHHHHHHccC-CHHHHHHHHH-HHhhcccccchhhHHhhcCChHHHHHhhcc-CCHHHHHHHHHHHH-
Q 009036 301 INKMLIVRSGLVPPIVDVLMAG-SAEAQEHACG-AIFSLALDDQNKTAIGVLGALPPLLHLLKS-DSERTQHDSALALY- 376 (546)
Q Consensus 301 ~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~-~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~- 376 (546)
.-+..+ ....+...+.-|+.- +..+-..|+. +-..|..+.+.+..+-.. .+..++.-|.+ .+..+...|+.+|.
T Consensus 281 ~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~ 358 (2710)
T PRK14707 281 GLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAE 358 (2710)
T ss_pred HHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHH
Confidence 333332 233444455555543 4444444444 444565554444333222 33333444443 34444455555444
Q ss_pred HhhcCchhHHHHHhcCcHHHHHHHHhC-c--hHHHHHHHHHH-HhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHH
Q 009036 377 HLSLVKSNRTKLVKLGSVNALLGMVNS-G--HMTGRVLLILG-NLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQE 452 (546)
Q Consensus 377 ~Ls~~~~n~~~iv~~Gav~~Lv~lL~~-~--~~~e~al~~L~-nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e 452 (546)
.|+...+-++.+--. .+...++.|+. + ..+..+...|. .|...++-+..+ +...+..+++-|.+- .+..+..
T Consensus 359 rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~-~~Q~van~lnalsKW--Pd~~~C~ 434 (2710)
T PRK14707 359 RLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGL-DPQGVSNALNALAKW--PDLPICG 434 (2710)
T ss_pred HhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhc-chhhHHHHHHHhhcC--CcchhHH
Confidence 466665555554433 34444444443 2 24444444443 344444444443 334556666666664 2344555
Q ss_pred HHHHHHHHHhcCChhhHHH
Q 009036 453 SCVSVLYALSHGGLRFKGL 471 (546)
Q Consensus 453 ~Av~~L~~L~~~~~~~~~~ 471 (546)
.++..|..-..++.+.++.
T Consensus 435 ~aa~~lA~~la~d~~l~~~ 453 (2710)
T PRK14707 435 QAVSALAGRLAHDTELCKA 453 (2710)
T ss_pred HHHHHHHHHHhccHHHHhh
Confidence 5555554443344344443
No 279
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.46 E-value=73 Score=38.95 Aligned_cols=261 Identities=16% Similarity=0.117 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchH---HHHHhcCChHH
Q 009036 238 SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINK---MLIVRSGLVPP 314 (546)
Q Consensus 238 s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk---~~i~~~g~l~~ 314 (546)
+++..+|..-......|..++..... -.-...+.-|+.-|.+....+++.++.+|..|.....+- +.+- .....
T Consensus 1009 DP~~~Vq~aM~sIW~~Li~D~k~~vd-~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~ 1085 (1702)
T KOG0915|consen 1009 DPDKKVQDAMTSIWNALITDSKKVVD-EYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEA 1085 (1702)
T ss_pred CCcHHHHHHHHHHHHHhccChHHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHH
Confidence 45666666555555445543221111 111345556666677888999999999999988754332 2221 23333
Q ss_pred HHHHHccCCHHHHH---HHHHHHhhcccc----cc---hhhHHhhcCChHHHH--HhhccCCHHHHHHHHHHHHHhhcCc
Q 009036 315 IVDVLMAGSAEAQE---HACGAIFSLALD----DQ---NKTAIGVLGALPPLL--HLLKSDSERTQHDSALALYHLSLVK 382 (546)
Q Consensus 315 Lv~lL~~~~~~~~~---~Aa~~L~~Ls~~----~~---~k~~i~~~g~l~~Lv--~lL~~~~~~~~~~A~~aL~~Ls~~~ 382 (546)
+.++..+-...+|+ .++.+|..|+.- .+ .++.+ ..++|.|+ .++ +.-.++++.++.+|..|+...
T Consensus 1086 ~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l--~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1086 AFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL--DIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH--HHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhc
Confidence 44444333344444 445555554321 11 12221 23455554 223 456789999999999998754
Q ss_pred hhHHHHHhcCcHHHHHHHHhCch-------------HHHHHHHHHHH-hhCCc---ccHHHHHh-------CCcHHHHHH
Q 009036 383 SNRTKLVKLGSVNALLGMVNSGH-------------MTGRVLLILGN-LASCS---DGRVAVLD-------SGGVECLVG 438 (546)
Q Consensus 383 ~n~~~iv~~Gav~~Lv~lL~~~~-------------~~e~al~~L~n-La~~~---e~r~~i~~-------~g~i~~Lv~ 438 (546)
.-.-+-.-...|+.|++....-+ ....|+..+.. .+... +.....++ ...+|.+.+
T Consensus 1163 g~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~e 1242 (1702)
T KOG0915|consen 1163 GKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTE 1242 (1702)
T ss_pred hhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 43222233356777877776421 11122222221 11111 11111111 236677777
Q ss_pred HHccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 439 MLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 439 lL~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
+++.+ ..-..+-.++.++..|... ..+..... ...+..++..+.+-++.+++.-+.+.-.|.+..-
T Consensus 1243 l~R~s--Vgl~Tkvg~A~fI~~L~~r~~~emtP~s--gKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1243 LVRGS--VGLGTKVGCASFISLLVQRLGSEMTPYS--GKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred HHhcc--CCCCcchhHHHHHHHHHHHhccccCcch--hHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence 77775 2233344444555444431 11111111 1134555556666677777776666666665543
No 280
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.15 E-value=9.2 Score=43.48 Aligned_cols=174 Identities=13% Similarity=0.061 Sum_probs=102.9
Q ss_pred HHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHH
Q 009036 318 VLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNAL 397 (546)
Q Consensus 318 lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~L 397 (546)
.+.+.-+.+|.++...|..+....+.+..+...+++...++.|++++.-+--+|+..+..||.. .....++.|
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL 807 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDL 807 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence 3445556788899999999988777777777789999999999999888878888877777652 222355666
Q ss_pred HH-HHhCc-----hHHHHHHHHHHHhhCCcccHHHHHh---CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh-h
Q 009036 398 LG-MVNSG-----HMTGRVLLILGNLASCSDGRVAVLD---SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL-R 467 (546)
Q Consensus 398 v~-lL~~~-----~~~e~al~~L~nLa~~~e~r~~i~~---~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~-~ 467 (546)
.+ ..... +.+-.+=.++.++.. .+-.++. +-.+...+..+++ .+..-+..++++|..+|.... .
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~q---a~Gel~~~y~~~Li~tfl~gvre---pd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQ---ALGELVFKYKAVLINTFLSGVRE---PDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHH---HhccHHHHHHHHHHHHHHHhcCC---chHHHHHhHHHHHHHHHHHHhhh
Confidence 65 33221 111111122333221 0011110 1223344444443 345568888888888887321 2
Q ss_pred hHHHHHHCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhhcC
Q 009036 468 FKGLAAAAGMAEVLMRMER-VGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 468 ~~~~~~~~g~v~~L~~ll~-~~s~~~k~~A~~lL~~L~~~ 506 (546)
....+.+ ++..++.+.+ +|+.-+|+.|..+|..+-..
T Consensus 882 vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 882 VSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred hhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 2222222 4455555533 56788888888888777653
No 281
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=82.03 E-value=0.58 Score=51.76 Aligned_cols=65 Identities=11% Similarity=0.148 Sum_probs=46.8
Q ss_pred CceeCcccccccCCCeecCCCccccHHHHHHHHhc--CCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009036 44 GEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL--GFTPTLVDGTTPDFSTVIPNLALKSTILNW 108 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 108 (546)
.++.||||.....+|+.+.|-|.||+.|+...|.. +..-||.|..........--..-.+++++.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 56779999999999999999999999999885543 334788887544333333334456666655
No 282
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=82.00 E-value=11 Score=31.35 Aligned_cols=94 Identities=14% Similarity=-0.016 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHc
Q 009036 242 HEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLM 320 (546)
Q Consensus 242 ~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~ 320 (546)
++|..|+..|..=..++-..-..++ +..++..|+.-...+....++.++..|..+..++.....+.+-|++..|.++=.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 4566777766543333222223333 345566666655666667888999999999999999999999999988666655
Q ss_pred cCCHHHHHHHHHHHh
Q 009036 321 AGSAEAQEHACGAIF 335 (546)
Q Consensus 321 ~~~~~~~~~Aa~~L~ 335 (546)
.-++..+...-.++.
T Consensus 82 ~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 82 NVEPNLQAEIDEILD 96 (98)
T ss_pred cCCHHHHHHHHHHHh
Confidence 556666655555543
No 283
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=81.72 E-value=60 Score=34.72 Aligned_cols=183 Identities=13% Similarity=0.094 Sum_probs=97.3
Q ss_pred hhHHHHHHhcCCC-CHHHHHHHHHHHHHHhccChhh-hHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchH
Q 009036 227 EQEDYFVQKLKSP-QVHEVEEALISLRKLTRSREET-RVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINK 303 (546)
Q Consensus 227 ~~i~~lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~-r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk 303 (546)
..+..+++.++.. ..+.+..|+..|..+..++... +.+.. .-++..+++.|.. .+...+..|+.+|..++.+...+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 3455666677555 5678889999898887766322 11111 1345667777766 68888899999999988653322
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHH-HhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc
Q 009036 304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGA-IFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK 382 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~-L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~ 382 (546)
-.=-..-+|..+++.-.+...++...|... +..++.....+ .|..+..++...+...-..++..+-.|+..-
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l 437 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERL 437 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhc
Confidence 110001133444444445556665555543 34444433322 2233334444443333234444444444311
Q ss_pred hhHHHHHhc--CcHHHHHHHHhCch--HHHHHHHHHHHhh
Q 009036 383 SNRTKLVKL--GSVNALLGMVNSGH--MTGRVLLILGNLA 418 (546)
Q Consensus 383 ~n~~~iv~~--Gav~~Lv~lL~~~~--~~e~al~~L~nLa 418 (546)
-++.+... ...|.+++...+.+ ++..|+.+|..+.
T Consensus 438 -~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 438 -SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred -CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 12222221 46677777766543 6777776665543
No 284
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.67 E-value=8.2 Score=34.46 Aligned_cols=73 Identities=22% Similarity=0.253 Sum_probs=61.7
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHcc------CCHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLIIS------RYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~s------~~~~v~~~A~~~L~nLs~ 298 (546)
..++..+.++|+++++.++..|+..|-.+.+.+ ......+.+.+++.-|++++.. .+..++..++..|...+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999875 4567788889999999999853 478899999888877654
No 285
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=81.60 E-value=7.3 Score=30.62 Aligned_cols=65 Identities=20% Similarity=0.164 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 009036 407 TGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAA 474 (546)
Q Consensus 407 ~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~ 474 (546)
.+.|+.++.++++.+.|...+.+.+.++.++++.... ....++--|..+|.-++... +..+++.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s--~v~siRGT~fy~Lglis~T~-~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENS--PVLSIRGTCFYVLGLISSTE-EGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhC--CccchHHHHHHHHHHHhCCH-HHHHHHHH
Confidence 4569999999999999999888899999999999886 34667788888888777644 33444433
No 286
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=81.29 E-value=36 Score=39.03 Aligned_cols=169 Identities=17% Similarity=0.115 Sum_probs=106.6
Q ss_pred HHHHhc-CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhc
Q 009036 231 YFVQKL-KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRS 309 (546)
Q Consensus 231 ~lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~ 309 (546)
.+...| +...+.++..+...+.++++.-. ......+.++.+..+...+...+++.|...+.++...-....- ...
T Consensus 240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d-~~~ 315 (759)
T KOG0211|consen 240 PIVQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDD-VVK 315 (759)
T ss_pred HHHHhhccccchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchh-hhh
Confidence 344444 55677888888888888887533 2666778899999999888888898888887766542111101 123
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc--CchhHHH
Q 009036 310 GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL--VKSNRTK 387 (546)
Q Consensus 310 g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~--~~~n~~~ 387 (546)
.+.+.++.....++..++...+.....|...=.. .......+++...++++...+++..++.-...++. +.+....
T Consensus 316 ~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~ 393 (759)
T KOG0211|consen 316 SLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPN 393 (759)
T ss_pred hhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccc
Confidence 4678888888888888887777776666432111 22333456677777776555555555544444443 3334445
Q ss_pred HHhcCcHHHHHHHHhCch
Q 009036 388 LVKLGSVNALLGMVNSGH 405 (546)
Q Consensus 388 iv~~Gav~~Lv~lL~~~~ 405 (546)
+...-.++.+..+..+..
T Consensus 394 i~~~~ilp~~~~lv~d~~ 411 (759)
T KOG0211|consen 394 IPDSSILPEVQVLVLDNA 411 (759)
T ss_pred cchhhhhHHHHHHHhccc
Confidence 555555777777776654
No 287
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.17 E-value=92 Score=35.49 Aligned_cols=68 Identities=19% Similarity=0.128 Sum_probs=46.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD 341 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~ 341 (546)
+.++|-..|.+....+.-+|+.++.+|... +-..+. -.+..|--+|.+...-+|-.|.++|..++...
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~ 313 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKH 313 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC
Confidence 344455556667778888888888876532 111111 15666666778888999999999999987754
No 288
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=80.95 E-value=71 Score=33.37 Aligned_cols=230 Identities=20% Similarity=0.175 Sum_probs=120.1
Q ss_pred hHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhh-cccccchhhH
Q 009036 270 LLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFS-LALDDQNKTA 346 (546)
Q Consensus 270 ~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~-Ls~~~~~k~~ 346 (546)
-|..+++-+.+ ....++..++.-|..-+.++..+..+...|.++.+++.+.. ++..+...++.++.. |+.+...-..
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 35666666653 35567777777788878889999999999999999999954 444355555555544 4444444444
Q ss_pred HhhcCChHHHHHhhccCCH-HHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC-----------chHHHHHHHHH
Q 009036 347 IGVLGALPPLLHLLKSDSE-RTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS-----------GHMTGRVLLIL 414 (546)
Q Consensus 347 i~~~g~l~~Lv~lL~~~~~-~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~-----------~~~~e~al~~L 414 (546)
+.....+..++.++.-+.. ......- .....+-.++.+ +.+..+-+++.. .+.+-.++.+|
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~l 174 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLAL 174 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHHH
Confidence 4445566666777771100 0000000 000011111111 112212222210 11344456666
Q ss_pred HHhhC------------Ccc---cHHHHHhCCcHHHHHHHHcc----CC----C-----CCHHHHHHHHHHHHHHhcCCh
Q 009036 415 GNLAS------------CSD---GRVAVLDSGGVECLVGMLRK----GT----E-----LSESTQESCVSVLYALSHGGL 466 (546)
Q Consensus 415 ~nLa~------------~~e---~r~~i~~~g~i~~Lv~lL~~----~~----~-----~s~~~~e~Av~~L~~L~~~~~ 466 (546)
..++. ... =++.+.+.|++..|+.++.. .. . .+-..-+.++.+|-+.+..+.
T Consensus 175 e~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~ 254 (361)
T PF07814_consen 175 ESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSE 254 (361)
T ss_pred HHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCc
Confidence 66641 111 26667778899999999862 10 0 012244678888888776544
Q ss_pred hhHHHHH--HCCc-HHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 467 RFKGLAA--AAGM-AEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 467 ~~~~~~~--~~g~-v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
..+.... ..+. +..+..++....+.+.+.-..+|+.+-.-
T Consensus 255 ~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNl 297 (361)
T PF07814_consen 255 ENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNL 297 (361)
T ss_pred cchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeC
Confidence 4444222 2223 34444445555555555444555555443
No 289
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=80.83 E-value=3.1 Score=44.11 Aligned_cols=176 Identities=14% Similarity=0.062 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhhcCCchHHHH-HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc--c---c---hhhHHhhcCChHH
Q 009036 285 VQVNAVAALVNLSLEKINKMLI-VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD--D---Q---NKTAIGVLGALPP 355 (546)
Q Consensus 285 v~~~A~~~L~nLs~~~~nk~~i-~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~---~---~k~~i~~~g~l~~ 355 (546)
++..|..++..+..++..+... .-......+...|.+..-..|+.+++++.+++.. + . ....+. .-.+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHH
Confidence 4456667777666776544332 2334566667777777778888999999887532 1 1 111111 112233
Q ss_pred HHHhhc---cCCHHHHHHHHHHHHHhhcCch----hHHHHHhcCcHHHHHHHHhC-c--hHHHHHHHHHHHhhCCcccHH
Q 009036 356 LLHLLK---SDSERTQHDSALALYHLSLVKS----NRTKLVKLGSVNALLGMVNS-G--HMTGRVLLILGNLASCSDGRV 425 (546)
Q Consensus 356 Lv~lL~---~~~~~~~~~A~~aL~~Ls~~~~----n~~~iv~~Gav~~Lv~lL~~-~--~~~e~al~~L~nLa~~~e~r~ 425 (546)
++..-. .++.+++.+|..+|.|+...-. ........|.+..++....- + .++-+++.++.||-+++.-.-
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 332221 2467888999999999876321 11111222333333322211 1 278899999999998765322
Q ss_pred HHHh-CC-cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 426 AVLD-SG-GVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 426 ~i~~-~g-~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
+-.. ++ +.+.|..++... .+-+++.+|+++|.....
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~--~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSC--KNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cCCCchHHHHHHHHHHHHHh--ccceEeehhhhhhcCCCC
Confidence 2222 23 456777777765 467888999999876654
No 290
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=80.77 E-value=21 Score=40.74 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=64.6
Q ss_pred HHHHhhc-CchhHHHHHhcCcHHHHHHHHhC---chHHHHHHHHHHHhhCCcccHHHHHhCCcHH--HHHHHHccCCCCC
Q 009036 374 ALYHLSL-VKSNRTKLVKLGSVNALLGMVNS---GHMTGRVLLILGNLASCSDGRVAVLDSGGVE--CLVGMLRKGTELS 447 (546)
Q Consensus 374 aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~---~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~--~Lv~lL~~~~~~s 447 (546)
+|+++.. +++++..+++.|++..+.+.+.. .+....++++|.|++...+.+..+.-...+. .+-.++... .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w--~~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW--DS 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--ch
Confidence 7888877 67899999999999999999974 4588899999999998776665554322222 222234442 33
Q ss_pred HHHHHHHHHHHHHHhcC
Q 009036 448 ESTQESCVSVLYALSHG 464 (546)
Q Consensus 448 ~~~~e~Av~~L~~L~~~ 464 (546)
.+...+|+++|+.+..+
T Consensus 572 ~ersY~~~siLa~ll~~ 588 (699)
T KOG3665|consen 572 IERSYNAASILALLLSD 588 (699)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 46678888888888664
No 291
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=80.47 E-value=1.3 Score=44.13 Aligned_cols=43 Identities=28% Similarity=0.484 Sum_probs=34.6
Q ss_pred CceeCcccccccCC---CeecCCCccccHHHHHHHHhcCCC--CCCCC
Q 009036 44 GEFLCPVSGSLMAD---PVVVSSGHTFERACAHVCKTLGFT--PTLVD 86 (546)
Q Consensus 44 ~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~--~cp~~ 86 (546)
.-|.||+..+.-.| ||.++|||..-+.++.+--+.|.- .||-|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 55899999998776 999999999999999776555532 56666
No 292
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.05 E-value=1.5 Score=44.34 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=46.5
Q ss_pred eeCcccccccC------CCeecCCCccccHHHHHHHHhcCCCCCCCCCCCC--C---CCCCcccHHHHHHHHHH
Q 009036 46 FLCPVSGSLMA------DPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTP--D---FSTVIPNLALKSTILNW 108 (546)
Q Consensus 46 ~~CpI~~~~m~------dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~--~---~~~l~pn~~l~~~i~~~ 108 (546)
+.|-||.+-++ -|-++.||||+|..|+.+-+..+.--||.|+.+. . ...|..|+.+-+.|+..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 34777766654 4778889999999999876655555678888772 2 34678888888888876
No 293
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.03 E-value=14 Score=33.84 Aligned_cols=108 Identities=16% Similarity=0.080 Sum_probs=70.3
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--cCChHHHHHhhccC-CHHHHHHHHHHHHHhhc----Cch
Q 009036 311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--LGALPPLLHLLKSD-SERTQHDSALALYHLSL----VKS 383 (546)
Q Consensus 311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~----~~~ 383 (546)
.+..+..+|++.+++.|-.++.++..++..... +.+.+ ..-+..|+.+|+.. ...+++.++.+|..|.. .++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 456677888888899898888888877665433 33322 34678888999874 56677777777777654 334
Q ss_pred hHHHHHhc---CcHHHHHHHHhCchHHHHHHHHHHHhhC
Q 009036 384 NRTKLVKL---GSVNALLGMVNSGHMTGRVLLILGNLAS 419 (546)
Q Consensus 384 n~~~iv~~---Gav~~Lv~lL~~~~~~e~al~~L~nLa~ 419 (546)
...++... +.+..++.++.+....+.++.+|..|-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33343332 5566666666654566667777666543
No 294
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=79.62 E-value=9.6 Score=33.66 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=60.7
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLIISR--YTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~ 298 (546)
..++..|.++|+++++.+|..|+..|-.+.+.+ ......+....++..|+.++... .+.++..++..+...+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999984 45677788889999999988764 33488888888877654
No 295
>PRK14707 hypothetical protein; Provisional
Probab=79.51 E-value=1.9e+02 Score=36.98 Aligned_cols=218 Identities=17% Similarity=0.028 Sum_probs=106.2
Q ss_pred CCchhHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHH-hhcCCc
Q 009036 224 NSNEQEDYFVQKL-KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVN-LSLEKI 301 (546)
Q Consensus 224 ~~~~~i~~lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~n-Ls~~~~ 301 (546)
++...+..+++.| |=++......|+..|..-.-.+.+.+..+-..|+-..|-.+-+-++..+...++..|.. ++.+.+
T Consensus 370 l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~ 449 (2710)
T PRK14707 370 LEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTE 449 (2710)
T ss_pred cchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHH
Confidence 3445556666666 33445556666677766555667788887777776666666677788887777777754 444444
Q ss_pred hHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHH-hhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHH-HHHHh
Q 009036 302 NKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAI-FSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSAL-ALYHL 378 (546)
Q Consensus 302 nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L-~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~-aL~~L 378 (546)
-++.+- ...|...+..|+.- +..+-..|+..| ..|+.+.+.+..+--.++...|-.+=+-.+......|+. +-..+
T Consensus 450 l~~~~~-p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl 528 (2710)
T PRK14707 450 LCKALD-PINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERV 528 (2710)
T ss_pred HHhhcC-hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHh
Confidence 444332 22244445555543 333333344433 456555444333322222222222222233222222222 22222
Q ss_pred hcCchhHHHHHhcCcHHHHHHHHhC-c--hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccC
Q 009036 379 SLVKSNRTKLVKLGSVNALLGMVNS-G--HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG 443 (546)
Q Consensus 379 s~~~~n~~~iv~~Gav~~Lv~lL~~-~--~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~ 443 (546)
.... ........--+..+++-|+. + ..++.+...|..+.........-.+.-.|..+++.|.+-
T Consensus 529 ~~~~-~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKW 595 (2710)
T PRK14707 529 VDEL-QLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKW 595 (2710)
T ss_pred ccch-hhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccC
Confidence 2211 11111111122233333332 2 255555555555554444444444455677777877775
No 296
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=79.13 E-value=14 Score=40.53 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=59.4
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
+.+++.++......+..+|..|++.|-.+++++++.... ++..|+.+|.++++.....+-.+|..|...+
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d----- 127 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQLLQTDDPVELDAVKNSLMSLLKQD----- 127 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHHHTT---HHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-----
Confidence 678889999999999999999999999999987655444 3577888998888765544444444433211
Q ss_pred HHhcCChHHHHHHHc---cCCHHHHHHHHHHHh
Q 009036 306 IVRSGLVPPIVDVLM---AGSAEAQEHACGAIF 335 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~---~~~~~~~~~Aa~~L~ 335 (546)
-.+.+..|..-+. +++..+|+.+...|.
T Consensus 128 --~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 128 --PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 1133444555443 567777887777663
No 297
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=78.51 E-value=44 Score=34.37 Aligned_cols=155 Identities=15% Similarity=0.075 Sum_probs=103.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhc-cChhhhHHhhc-CC-hHHHHHHHHccC-----C--------HHHHHHHHHH
Q 009036 229 EDYFVQKLKSPQVHEVEEALISLRKLTR-SREETRVSLCT-PR-LLLALRSLIISR-----Y--------TNVQVNAVAA 292 (546)
Q Consensus 229 i~~lv~~L~s~~~~~~~~Al~~L~~La~-~~~~~r~~l~~-~g-~i~~Lv~lL~s~-----~--------~~v~~~A~~~ 292 (546)
...+-+.|.+.....+..+++.|..+.. .+....+.+.. -+ -.+.|..++... + +.++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5677778888888888899999999988 55455444443 22 244555555311 1 2777777777
Q ss_pred HHHhhc--CCchHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHhh-ccccc----chhhHHhhcCChHHHHHhhccCC
Q 009036 293 LVNLSL--EKINKMLIV-RSGLVPPIVDVLMAGSAEAQEHACGAIFS-LALDD----QNKTAIGVLGALPPLLHLLKSDS 364 (546)
Q Consensus 293 L~nLs~--~~~nk~~i~-~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~-Ls~~~----~~k~~i~~~g~l~~Lv~lL~~~~ 364 (546)
+..+.. ++..+..+. +.+.+..+..-|...++++......+|.. +..+. ..|..+.....+..|+.+...++
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666555 345555555 45678888888888889999999988874 43333 33566666678888888766655
Q ss_pred H----HHHHHHHHHHHHhhcCch
Q 009036 365 E----RTQHDSALALYHLSLVKS 383 (546)
Q Consensus 365 ~----~~~~~A~~aL~~Ls~~~~ 383 (546)
+ .+...+-..|..+|.++.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC
Confidence 5 565666667777776543
No 298
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=78.48 E-value=5.5 Score=38.73 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhcccccchhhHHhhcCC---h----HHHHHhhcc-CCHHHHHHHHHHHHHhhcCchh--HHHHHhcCcH
Q 009036 325 EAQEHACGAIFSLALDDQNKTAIGVLGA---L----PPLLHLLKS-DSERTQHDSALALYHLSLVKSN--RTKLVKLGSV 394 (546)
Q Consensus 325 ~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~---l----~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n--~~~iv~~Gav 394 (546)
.-|..|..+|..|+..+.|...|...+- + ..|+++|.. +++-.++.|+.+|.+|+..++. +....+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4578999999999999988888765442 3 334444433 6888999999999999986654 3344455999
Q ss_pred HHHHHHHhCch
Q 009036 395 NALLGMVNSGH 405 (546)
Q Consensus 395 ~~Lv~lL~~~~ 405 (546)
..|+.++.+..
T Consensus 219 ~~Li~FiE~a~ 229 (257)
T PF12031_consen 219 SHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999997643
No 299
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=77.88 E-value=46 Score=37.02 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhc---CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhc--CChHH
Q 009036 240 QVHEVEEALISLRKLTRSREETRVSLCT---PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRS--GLVPP 314 (546)
Q Consensus 240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~---~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~--g~l~~ 314 (546)
+++.+--|+..||.+.++...+-..+-. +.++..++..+. .++..+-.++++|.|+..++.+++.+... ..+..
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~ 635 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDP 635 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh
Confidence 4555667888888887765544333221 234555555554 56777888999999999998888877644 12222
Q ss_pred HHHHHccCCHHHHHHHHHHHhhccc--ccchhhHHhhcCChHHHHHhhcc-----CCHHHHHHHHHHHHHhhcCchhHHH
Q 009036 315 IVDVLMAGSAEAQEHACGAIFSLAL--DDQNKTAIGVLGALPPLLHLLKS-----DSERTQHDSALALYHLSLVKSNRTK 387 (546)
Q Consensus 315 Lv~lL~~~~~~~~~~Aa~~L~~Ls~--~~~~k~~i~~~g~l~~Lv~lL~~-----~~~~~~~~A~~aL~~Ls~~~~n~~~ 387 (546)
++..=...+..++...+.+..|++. ...+- +.+..+.|...+.. ++-++.--++.||.+|+..+.+..+
T Consensus 636 ~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~ 711 (745)
T KOG0301|consen 636 VIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ 711 (745)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH
Confidence 2222112234444433333334332 22221 13455555444432 2334555667788899888877777
Q ss_pred HHhcCcHHHHHHHHhC
Q 009036 388 LVKLGSVNALLGMVNS 403 (546)
Q Consensus 388 iv~~Gav~~Lv~lL~~ 403 (546)
+...--|..+++-+.+
T Consensus 712 ~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 712 LAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHhcCHHHHHHHHHH
Confidence 7776667777776654
No 300
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=77.47 E-value=0.9 Score=35.42 Aligned_cols=49 Identities=20% Similarity=0.098 Sum_probs=35.5
Q ss_pred CCCceeCcccccccCC-Ceec-CCCccccHHHHHHHHhcC--CCCCCCCCCCC
Q 009036 42 PPGEFLCPVSGSLMAD-PVVV-SSGHTFERACAHVCKTLG--FTPTLVDGTTP 90 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~d-PV~~-~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~ 90 (546)
.|-+-.||-|.-.=.| |.++ -|-|.|-+-||.+|++.. ...||.|++..
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 4555667777655444 5555 899999999999999753 34899998754
No 301
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.25 E-value=43 Score=37.63 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=72.6
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 009036 310 GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLV 389 (546)
Q Consensus 310 g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv 389 (546)
|.+..|++-..+.+..+|...+.+|..++........-.-.+.++.|..-|.+..+.++..|+.+|..+-..+.+ -
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d----e 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD----E 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----C
Confidence 445555555566788999999999998876322222222345677777777777889999999999998642211 1
Q ss_pred hcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHH
Q 009036 390 KLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVL 428 (546)
Q Consensus 390 ~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~ 428 (546)
+..++..+..++.... ++. .+|.|++..+..+..|+
T Consensus 161 e~~v~n~l~~liqnDpS~EVRR---aaLsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRR---AALSNISVDNSTLPCIV 199 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHH---HHHHhhccCcccchhHH
Confidence 1246677888887543 555 44556666655555555
No 302
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=76.41 E-value=9.8 Score=33.89 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=60.9
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHccC-CHH---HHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLIISR-YTN---VQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~s~-~~~---v~~~A~~~L~nLs~ 298 (546)
..++..|.++|+++++.+|..|+..|-.+.+.+ +.....+....++..|..++... ... +++.++..|.....
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999987 56778888889999999988753 333 88888888876654
No 303
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=75.88 E-value=38 Score=38.71 Aligned_cols=195 Identities=15% Similarity=0.071 Sum_probs=115.6
Q ss_pred HHHHhhcC-CchHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChH--HHHHhhccC-CHH
Q 009036 292 ALVNLSLE-KINKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALP--PLLHLLKSD-SER 366 (546)
Q Consensus 292 ~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~--~Lv~lL~~~-~~~ 366 (546)
+|.++..+ +++.+.+.+.+++..+...++.. ..+.+..+..+|.+++...+.+........+. .+-.++..- ..+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 55566664 78888999999999999999976 67889999999999988765544443211111 222233332 324
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHH-HHHHHccCCC
Q 009036 367 TQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVEC-LVGMLRKGTE 445 (546)
Q Consensus 367 ~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~-Lv~lL~~~~~ 445 (546)
.--.|+..|..+....+. ....+.-+. +.+....++... ......+.....+.. +.+++...
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~~---------~~~~l~e~i~~~---~~~~~~~~~~~~f~~~~~~il~~s-- 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRNS---------VNELLVEAISRW---LTSEIRVINDRSFFPRILRILRLS-- 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchHH---------HHHHHHHHhhcc---CccceeehhhhhcchhHHHHhccc--
Confidence 445666677776554332 111111111 222222222222 222222222222222 55555554
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHH-HhcCCHHHHHHHHHHHHHh
Q 009036 446 LSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRM-ERVGSEHVKEKAKRMLELM 503 (546)
Q Consensus 446 ~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~l-l~~~s~~~k~~A~~lL~~L 503 (546)
..+..+-+|+.++.+++.........+...|++..+..+ .......+++.+..++-..
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 346778999999999999777788888888888888776 3333666677776665443
No 304
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.45 E-value=3.1 Score=43.13 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=27.5
Q ss_pred CceeCcccccccCC---CeecCCCccccHHHHHHHHh
Q 009036 44 GEFLCPVSGSLMAD---PVVVSSGHTFERACAHVCKT 77 (546)
Q Consensus 44 ~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~ 77 (546)
.-|.|-||.+-..- =+.+||+|.||+.|...++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 45789999987543 45679999999999988874
No 305
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=74.71 E-value=82 Score=33.89 Aligned_cols=269 Identities=15% Similarity=0.093 Sum_probs=132.5
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC------CchHHHHHhcCChH
Q 009036 240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE------KINKMLIVRSGLVP 313 (546)
Q Consensus 240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~------~~nk~~i~~~g~l~ 313 (546)
...++.+++..|..++..-.-.|..++ .+...+..-+...++.++..+...|..+... ++.-+.=...|.+-
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw 345 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFW 345 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHH
Confidence 345788999999988876433333322 2333444445567888998888877665321 22111111111111
Q ss_pred ------HHHHHHc-cCCHHHHHHHHHHHhhccccc-----ch---hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036 314 ------PIVDVLM-AGSAEAQEHACGAIFSLALDD-----QN---KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHL 378 (546)
Q Consensus 314 ------~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~-----~~---k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L 378 (546)
++-..+. +..+..+..++-++.++.... +. ...+...|.- .+++.-++.+|.+++.-+
T Consensus 346 ~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~-------d~~~~lv~~aA~Ra~~Vy 418 (728)
T KOG4535|consen 346 TMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCN-------DSKNRLVKAAASRALGVY 418 (728)
T ss_pred HHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhccc-------chHHHHHHHHHHhhceeE
Confidence 1111111 112334556666676664332 11 1111111110 112233444555555444
Q ss_pred hcCchhHHHHH-hcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-----CcccHHHHHh-CC-cHHHHHHHHccCCCCCH
Q 009036 379 SLVKSNRTKLV-KLGSVNALLGMVNSGH--MTGRVLLILGNLAS-----CSDGRVAVLD-SG-GVECLVGMLRKGTELSE 448 (546)
Q Consensus 379 s~~~~n~~~iv-~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-----~~e~r~~i~~-~g-~i~~Lv~lL~~~~~~s~ 448 (546)
..++.-+.... -..+...+...|.+.. .++++...+.|+.. .+.-+.+--. .| .+..++..-........
T Consensus 419 VLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~d 498 (728)
T KOG4535|consen 419 VLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKD 498 (728)
T ss_pred EeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44444333222 2245555555665543 78889999998864 2221111111 12 23333333222222457
Q ss_pred HHHHHHHHHHHHHhcCC-----hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHH
Q 009036 449 STQESCVSVLYALSHGG-----LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDE 518 (546)
Q Consensus 449 ~~~e~Av~~L~~L~~~~-----~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~ 518 (546)
+++.+|+.+|.++..-- ..... +.+......+-...-.+.-.+|=+|.-++.+|.++..-.=...+|..
T Consensus 499 kV~~navraLgnllQvlq~i~~~~~~e-~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~ 572 (728)
T KOG4535|consen 499 KVKSNAVRALGNLLQFLQPIEKPTFAE-IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWAS 572 (728)
T ss_pred hhhhHHHHHHhhHHHHHHHhhhccHHH-HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchH
Confidence 88999999999886411 01111 11111122222233445778899999999999887765445556754
No 306
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=74.45 E-value=11 Score=43.19 Aligned_cols=146 Identities=16% Similarity=0.111 Sum_probs=96.2
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc--CChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cch
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT--PRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KIN 302 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~--~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~n 302 (546)
...++.+++.+.+.+..++.-=+..|.+...+-+. ..+.. +.++|.|+..|.-+|..+|-.++.+|-.+... +.-
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 34567777777644444555556666665554332 22322 56788899999999999988888887665443 222
Q ss_pred HHHHHhcCChHHHHHHHccCC---HHHHHHHHHHHhhccc-ccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHH
Q 009036 303 KMLIVRSGLVPPIVDVLMAGS---AEAQEHACGAIFSLAL-DDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALA 374 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~~---~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~a 374 (546)
...-+ ...+|.++.+=++.+ ..+|+.|...|..|.. .+...-.-....++.+|.+.|.+...-+|++|+.+
T Consensus 944 ~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred chHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 21111 235666666555443 6789999999999988 44444344556788999999988877888888865
No 307
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.41 E-value=1.5 Score=44.80 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=42.1
Q ss_pred CceeCcccccccCC---CeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 009036 44 GEFLCPVSGSLMAD---PVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFST 94 (546)
Q Consensus 44 ~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~ 94 (546)
..+.|.|++++|.| |++.|.|++|-...|+.|-...+-.||.++..++...
T Consensus 329 S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 329 SRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE 382 (389)
T ss_pred hHHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence 44679999999987 9999999999999999997655468998877766533
No 308
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=74.33 E-value=2.2 Score=44.17 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=26.4
Q ss_pred CeecCCCccccH-----HHHHHHHhc------------CCCCCCCCCCCCCCCC
Q 009036 58 PVVVSSGHTFER-----ACAHVCKTL------------GFTPTLVDGTTPDFST 94 (546)
Q Consensus 58 PV~~~~G~ty~r-----~~i~~~~~~------------~~~~cp~~~~~~~~~~ 94 (546)
|..-+|++-||| +|+.+||.. +.+|||.|+..++-.+
T Consensus 301 ~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 334578888876 789999953 3459999998765433
No 309
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.25 E-value=35 Score=40.34 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=95.7
Q ss_pred hHHHHHhhcc----CCHHHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhC-ch--HHHHHHHHHHHhhCCcccH
Q 009036 353 LPPLLHLLKS----DSERTQHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNS-GH--MTGRVLLILGNLASCSDGR 424 (546)
Q Consensus 353 l~~Lv~lL~~----~~~~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~-~~--~~e~al~~L~nLa~~~e~r 424 (546)
.|.++..++. .+++++..|..+|..|.. ..+.+.. ..+.|+.++.. +. ++.+++..+.-|+.+-.+
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn- 994 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN- 994 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc-
Confidence 4445555543 478888888888888754 3333322 46778887763 32 677777777777643221
Q ss_pred HHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 425 VAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 425 ~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
++ ...-+.|...|.+ .+..++..|+-+|..|- ...+++--|.+.-+...+.+++++++..|....+.|+
T Consensus 995 --li-e~~T~~Ly~rL~D---~~~~vRkta~lvlshLI-----LndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 --LI-EPWTEHLYRRLRD---ESPSVRKTALLVLSHLI-----LNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred --cc-chhhHHHHHHhcC---ccHHHHHHHHHHHHHHH-----HhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 11 1234667777777 57899999999999884 4456777788999999999999999999997666666
Q ss_pred cCC
Q 009036 505 GRA 507 (546)
Q Consensus 505 ~~~ 507 (546)
..+
T Consensus 1064 ~k~ 1066 (1251)
T KOG0414|consen 1064 SKG 1066 (1251)
T ss_pred hcc
Confidence 544
No 310
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.99 E-value=1.7 Score=49.38 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=34.1
Q ss_pred eeCcccccccC--C---Ceec--CCCccccHHHHHHHHhc-CCCCCCCCCCCC
Q 009036 46 FLCPVSGSLMA--D---PVVV--SSGHTFERACAHVCKTL-GFTPTLVDGTTP 90 (546)
Q Consensus 46 ~~CpI~~~~m~--d---PV~~--~~G~ty~r~~i~~~~~~-~~~~cp~~~~~~ 90 (546)
-.|+||.-++. | |=-. .|.|.|--+|+-+|++. ++..||.|+..+
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 35999999864 3 3222 46799999999999986 566999998544
No 311
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=73.95 E-value=2.7 Score=30.80 Aligned_cols=32 Identities=34% Similarity=0.713 Sum_probs=26.5
Q ss_pred eeCccccccc--CCCeec--CCCccccHHHHHHHHhcCC
Q 009036 46 FLCPVSGSLM--ADPVVV--SSGHTFERACAHVCKTLGF 80 (546)
Q Consensus 46 ~~CpI~~~~m--~dPV~~--~~G~ty~r~~i~~~~~~~~ 80 (546)
-.|++|++-| .|.+++ .||-.|=|.| |...|.
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C---~~~~g~ 41 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDC---WEKAGG 41 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHH---HhhCCc
Confidence 4699999999 889887 8999999999 544444
No 312
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=73.44 E-value=43 Score=30.60 Aligned_cols=145 Identities=16% Similarity=0.173 Sum_probs=83.8
Q ss_pred cCChHHHHHhhccC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHH
Q 009036 350 LGALPPLLHLLKSD-SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVL 428 (546)
Q Consensus 350 ~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~ 428 (546)
...+..|+.+|+.+ +..++++++++|..|-.-+..+.+.+..+.-..- ..-.........+ .+... ...-+...
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~-~~~~~~~~~~~~l---~~~~~-~~~~ee~y 83 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS-SENSNDESTDISL---PMMGI-SPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc-cccccccchhhHH---hhccC-CCchHHHH
Confidence 34677888888876 6889999999999997766666664433111000 0000000111111 11111 11334455
Q ss_pred hCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009036 429 DSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELM 503 (546)
Q Consensus 429 ~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L 503 (546)
-.-++..|+++|++.+ -..-...++.++..+... +..+...+.+ +++.++..+++.++..++.-..-|..|
T Consensus 84 ~~vvi~~L~~iL~D~s--Ls~~h~~vv~ai~~If~~l~~~cv~~L~~--viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPS--LSSHHTAVVQAIMYIFKSLGLKCVPYLPQ--VIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHhcCcCchhHHHH--HhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5567888999888842 123344666776666642 2234444443 789999999988888887755555444
No 313
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=72.77 E-value=4.6 Score=45.13 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=38.1
Q ss_pred eeCcccccccCCCeec---CCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 46 FLCPVSGSLMADPVVV---SSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 46 ~~CpI~~~~m~dPV~~---~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
-.||+|+.-+.|-.+. +|||-||..||..|-+ ...+||.|+..+..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence 4699999999999874 8999999999999965 34589998876543
No 314
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=72.67 E-value=1.1 Score=37.62 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=29.2
Q ss_pred CCCCCCceeCcccccccCCCeec--CCCccccHHHHH
Q 009036 39 TAEPPGEFLCPVSGSLMADPVVV--SSGHTFERACAH 73 (546)
Q Consensus 39 ~~~~p~~~~CpI~~~~m~dPV~~--~~G~ty~r~~i~ 73 (546)
.+.+.++-.|++|++-+.++++. ||||.|-..|+.
T Consensus 72 ~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 72 SVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred eEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 35667777899999999988775 999999999975
No 315
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=72.59 E-value=1.1e+02 Score=30.54 Aligned_cols=213 Identities=19% Similarity=0.145 Sum_probs=119.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhcc----ChhhhHHhhc-----------CChHHHHHHHHccCCHHHHHHHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRS----REETRVSLCT-----------PRLLLALRSLIISRYTNVQVNAVAA 292 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~----~~~~r~~l~~-----------~g~i~~Lv~lL~s~~~~v~~~A~~~ 292 (546)
.+..-+..|.+..+.+=..|+..|..+... ++..+..+.+ .|+-+.+++-|.+.. ..+.++.+
T Consensus 8 lFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~--t~e~tl~l 85 (262)
T PF14225_consen 8 LFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS--TYELTLRL 85 (262)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC--cHHHHHHH
Confidence 345566667666666666777777665443 2223333321 233344444444433 34456666
Q ss_pred HHHhhcCC--------chHHHHHhcCChHHHHHHHccCC----HHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhh
Q 009036 293 LVNLSLEK--------INKMLIVRSGLVPPIVDVLMAGS----AEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLL 360 (546)
Q Consensus 293 L~nLs~~~--------~nk~~i~~~g~l~~Lv~lL~~~~----~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL 360 (546)
|..|...+ +++-.+.=.+.+|.++.-+.+++ .......|..|..++.... ...+..++...
T Consensus 86 L~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~y 158 (262)
T PF14225_consen 86 LSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSY 158 (262)
T ss_pred HHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHH
Confidence 66655432 23333333345666666666666 1334466677777763211 22333444333
Q ss_pred ccC----CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHH
Q 009036 361 KSD----SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVE 434 (546)
Q Consensus 361 ~~~----~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~ 434 (546)
..+ ..+-...++..|+.-.. ++ .+...+..|+.+|.++. ++..++.+|..|-...+-+.. ...+.+.
T Consensus 159 a~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlis 231 (262)
T PF14225_consen 159 AKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLIS 231 (262)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHH
Confidence 332 33444555555554322 11 23345677899998764 899999999999876655544 4456899
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 435 CLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 435 ~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
+|+++|... .-..|+.+|-.+-
T Consensus 232 pllrlL~t~------~~~eAL~VLd~~v 253 (262)
T PF14225_consen 232 PLLRLLQTD------LWMEALEVLDEIV 253 (262)
T ss_pred HHHHHhCCc------cHHHHHHHHHHHH
Confidence 999999873 2466777776554
No 316
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.57 E-value=1.8e+02 Score=33.14 Aligned_cols=123 Identities=12% Similarity=0.136 Sum_probs=70.0
Q ss_pred HHHHHccCCHHHHHHHHHHHhhc-ccccchhhHHhhcCChHHHHHh-hccCCHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 009036 315 IVDVLMAGSAEAQEHACGAIFSL-ALDDQNKTAIGVLGALPPLLHL-LKSDSERTQHDSALALYHLSLVKSNRTKLVKLG 392 (546)
Q Consensus 315 Lv~lL~~~~~~~~~~Aa~~L~~L-s~~~~~k~~i~~~g~l~~Lv~l-L~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~G 392 (546)
+-+++.+.++-+|...+-++..- +.. +..++|..|++. +.+.+.++++.|+.+|.-++..+..
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-------- 588 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-------- 588 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------
Confidence 33455555666655444333211 111 234577777777 4556889999999998877664332
Q ss_pred cHHHHHHHHhC---chHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 009036 393 SVNALLGMVNS---GHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYAL 461 (546)
Q Consensus 393 av~~Lv~lL~~---~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L 461 (546)
..+..+++|.+ +.++.-++.+|.--|.....+.++ ..|-.++.+ ...-+++-|+-++.-+
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D---~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSD---PVDFVRQGALIALAMI 651 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcC---hHHHHHHHHHHHHHHH
Confidence 35566677764 348888888888777655444433 122222222 2244666666655443
No 317
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=72.50 E-value=2.7 Score=41.81 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=34.0
Q ss_pred ceeCcccccc----cCCCeecCCCccccHHHHHHHHhcCCCCCCCCCC
Q 009036 45 EFLCPVSGSL----MADPVVVSSGHTFERACAHVCKTLGFTPTLVDGT 88 (546)
Q Consensus 45 ~~~CpI~~~~----m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~ 88 (546)
++-||||.+. +.+|..++|||+-=..|.+.....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 3449999987 5678889999998877777666656 89999954
No 318
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.03 E-value=0.9 Score=44.70 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=30.3
Q ss_pred ceeCcccccccCCCeecCCCcc-ccHHHHHHHHhcCCC--CCCCCCCC
Q 009036 45 EFLCPVSGSLMADPVVVSSGHT-FERACAHVCKTLGFT--PTLVDGTT 89 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~--~cp~~~~~ 89 (546)
+.+|-||.+.=+|=|.|+|||. -|-.| |.. .||+|++.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQY 340 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHH
Confidence 7889999999999999999995 45555 332 68888764
No 319
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.82 E-value=34 Score=36.69 Aligned_cols=153 Identities=12% Similarity=0.016 Sum_probs=88.9
Q ss_pred cCChHHHHHHHH----ccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccc
Q 009036 267 TPRLLLALRSLI----ISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALD 340 (546)
Q Consensus 267 ~~g~i~~Lv~lL----~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~ 340 (546)
+.|.+.-++..+ .+++..++..|+..|.|.+.. ++..... ..-.+..++.-|.++ +.++.-.++..|.-+..-
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 345555554444 346778889999999999886 4333332 233566777766655 678888888887766543
Q ss_pred cchhhHH-hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC--chhHHHHHhc--CcHHHHHHHHhCch-HHHHHHHHH
Q 009036 341 DQNKTAI-GVLGALPPLLHLLKSDSERTQHDSALALYHLSLV--KSNRTKLVKL--GSVNALLGMVNSGH-MTGRVLLIL 414 (546)
Q Consensus 341 ~~~k~~i-~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~--~~n~~~iv~~--Gav~~Lv~lL~~~~-~~e~al~~L 414 (546)
-.+.... +-..+.-.+..++.+++++.+.+|..+...|+.. ..-+.-+.+. +-...|+-.|.++. ....|++..
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~ 410 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSE 410 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHH
Confidence 3332211 1123445667788889999999888887777763 2233333331 22223333344443 344555555
Q ss_pred HHhhCC
Q 009036 415 GNLASC 420 (546)
Q Consensus 415 ~nLa~~ 420 (546)
...|.-
T Consensus 411 ~~~c~p 416 (533)
T KOG2032|consen 411 LRTCYP 416 (533)
T ss_pred HHhcCc
Confidence 555543
No 320
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=71.72 E-value=20 Score=32.01 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=58.2
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC--chHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhhccc
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEK--INKMLIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLAL 339 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~--~nk~~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~ 339 (546)
.++..|.+-|.+.++.++..|+.+|-.+..+. .....+...+++..|+.++.. .++.++..++.++..-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 56888888899999999999999999888863 456667778899999999974 478899999888877653
No 321
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=71.36 E-value=1.4e+02 Score=32.16 Aligned_cols=171 Identities=12% Similarity=0.089 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHHHHhhcCC-chHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHh
Q 009036 282 YTNVQVNAVAALVNLSLEK-INKMLIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHL 359 (546)
Q Consensus 282 ~~~v~~~A~~~L~nLs~~~-~nk~~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~l 359 (546)
..+-++.|+.-|..+..+. ...-.-.-...+..++++|.. .+...+..|.++|..++.....+-.=...-++..+++.
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 3444566666555544332 111110112357788899987 57888999999999988765332211123356666666
Q ss_pred hccCCHHHHHHHHHH-HHHhhcCchhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCCcccHHHHHh--CCcHH
Q 009036 360 LKSDSERTQHDSALA-LYHLSLVKSNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNLASCSDGRVAVLD--SGGVE 434 (546)
Q Consensus 360 L~~~~~~~~~~A~~a-L~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~~e~r~~i~~--~g~i~ 434 (546)
-.+.+.++...|... +.-|++....+. |..+..++... ...-.++..+..|+..- ..+.+.. .+..|
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l-~~EeL~~ll~diaP 451 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERL-SAEELLNLLPDIAP 451 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhc-CHHHHHHhhhhhhh
Confidence 666667776766664 444455433221 22223333222 23334444555555422 2333433 56788
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 435 CLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 435 ~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
.+++...+. +-.++..|+..|..+..
T Consensus 452 ~~iqay~S~---SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 452 CVIQAYDST---SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHhcCc---hHHhhhhHHHhHHHHHH
Confidence 888888883 46778888888877754
No 322
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=71.10 E-value=1.4 Score=51.90 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=36.7
Q ss_pred CCCceeCcccccccC-CCeecCCCccccHHHHHHHHhcCCCCCCCCC
Q 009036 42 PPGEFLCPVSGSLMA-DPVVVSSGHTFERACAHVCKTLGFTPTLVDG 87 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~-dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~ 87 (546)
+-..+.|+||+++|+ -=-+.-|||-||..|++-|+.. ..-||.|.
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 446679999999999 7778899999999999999874 33466664
No 323
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=71.04 E-value=4.4 Score=41.00 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=46.4
Q ss_pred CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009036 41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNW 108 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 108 (546)
...+-|-||||.+.|.-|+.= .-||.-|-.|=.+ -..-||.|+.++.+ +.++++.+.++.-
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc---HHHHHHHHHHHhc
Confidence 455778899999999999654 4599999999542 34479999887764 5777777777665
No 324
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=69.39 E-value=1.6e+02 Score=31.20 Aligned_cols=278 Identities=14% Similarity=0.154 Sum_probs=144.6
Q ss_pred hhHHHHHHhcCCCC-HHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc----------cCCHHHHHHHHHHHHH
Q 009036 227 EQEDYFVQKLKSPQ-VHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII----------SRYTNVQVNAVAALVN 295 (546)
Q Consensus 227 ~~i~~lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~----------s~~~~v~~~A~~~L~n 295 (546)
...+.++.-|..+- ..-+...+..++.|+++.... .-+.....+..|+.+-. ..|..+.-.++.+|.|
T Consensus 45 eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L-~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcN 123 (532)
T KOG4464|consen 45 ELGERIFEVLENGEPLTHRVVCLETVRILSRDKDGL-EPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCN 123 (532)
T ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHhcccccc-ccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHH
Confidence 34455666664443 455667788888888764311 11111122333333321 1345778889999999
Q ss_pred hhcCC-chHHHHHhcCChHHHHHHHcc-----CCHHHHHHHHHHHhhccccc-chhh-HHhhcCChHHHHHhhccC----
Q 009036 296 LSLEK-INKMLIVRSGLVPPIVDVLMA-----GSAEAQEHACGAIFSLALDD-QNKT-AIGVLGALPPLLHLLKSD---- 363 (546)
Q Consensus 296 Ls~~~-~nk~~i~~~g~l~~Lv~lL~~-----~~~~~~~~Aa~~L~~Ls~~~-~~k~-~i~~~g~l~~Lv~lL~~~---- 363 (546)
+..+. ..+....+...+..++..+.. ..-.+..+-+++|+-|.... +.+. .+...++++.+.+.|.+.
T Consensus 124 lvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgid 203 (532)
T KOG4464|consen 124 LVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGID 203 (532)
T ss_pred HHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCC
Confidence 99875 455555666666666655432 23345667778888776543 3344 445688999999988752
Q ss_pred C--------HH---HHHHHHHHHHHhhcCc--hhH-HHHHhc----CcHHHHHHHHhCc---------------hHHHHH
Q 009036 364 S--------ER---TQHDSALALYHLSLVK--SNR-TKLVKL----GSVNALLGMVNSG---------------HMTGRV 410 (546)
Q Consensus 364 ~--------~~---~~~~A~~aL~~Ls~~~--~n~-~~iv~~----Gav~~Lv~lL~~~---------------~~~e~a 410 (546)
+ ++ ....++.+++|+.... ..+ ...... ++....+..+... .+.+.+
T Consensus 204 se~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~ 283 (532)
T KOG4464|consen 204 SEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKC 283 (532)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhh
Confidence 1 12 3346777888886532 111 111111 1112222222111 133344
Q ss_pred HHHHHHhhCCcccHHHHH-hCC-cHHHHHHHHccC------CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHH
Q 009036 411 LLILGNLASCSDGRVAVL-DSG-GVECLVGMLRKG------TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLM 482 (546)
Q Consensus 411 l~~L~nLa~~~e~r~~i~-~~g-~i~~Lv~lL~~~------~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~ 482 (546)
+.++.-.-..+..-+.+- -.| -...+..+|... .+...+...-.+.+|..+|......+..++.. ++|.|.
T Consensus 284 ~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~Rkylr~q-VLPPLr 362 (532)
T KOG4464|consen 284 LDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVMRKYLRQQ-VLPPLR 362 (532)
T ss_pred hhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHHh-cCCchh
Confidence 444322211222222222 223 233333333321 01123344455677777777665555554432 566665
Q ss_pred HHHhcC-----------------CHHHHHHHHHHHHHhhcC
Q 009036 483 RMERVG-----------------SEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 483 ~ll~~~-----------------s~~~k~~A~~lL~~L~~~ 506 (546)
...+.+ ...+|..|++.|-.|++.
T Consensus 363 DV~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKe 403 (532)
T KOG4464|consen 363 DVSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKE 403 (532)
T ss_pred hhhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhhc
Confidence 554433 567788888888888764
No 325
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=69.21 E-value=42 Score=37.62 Aligned_cols=155 Identities=21% Similarity=0.172 Sum_probs=81.6
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc----CCHHHHHHHHHHHHHhhcC-C
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS----RYTNVQVNAVAALVNLSLE-K 300 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s----~~~~v~~~A~~~L~nLs~~-~ 300 (546)
.+++..+...+.+.... ..+|...|..+......- ....+..+..++.+ .+..+...|+.++..|... .
T Consensus 394 ~~av~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 394 NPAVKFIKDLIKSKKLT-DDEAAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHHHTT-S--HHHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 35556666666543322 122334444433321000 12345555566653 3556777777666666542 1
Q ss_pred ch---------HHHHHhcCChHHHHHHHc----cCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC---C
Q 009036 301 IN---------KMLIVRSGLVPPIVDVLM----AGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD---S 364 (546)
Q Consensus 301 ~n---------k~~i~~~g~l~~Lv~lL~----~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~---~ 364 (546)
.+ ........+++.|...|. .++.+-+..++.+|.|+ +....++.|...+... +
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~----------g~~~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL----------GHPESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----------T-GGGHHHHHTTSTTSS-S-
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc----------CCchhhHHHHhHhhhccccc
Confidence 11 111122346677776665 34677888889999988 3345778888888765 6
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC
Q 009036 365 ERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS 403 (546)
Q Consensus 365 ~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~ 403 (546)
..++..|+++|..+...... .+.+.|..++.+
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n 569 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPE-------KVREILLPIFMN 569 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcC
Confidence 77888888898877443221 134556666665
No 326
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=68.61 E-value=2e+02 Score=32.01 Aligned_cols=205 Identities=17% Similarity=0.101 Sum_probs=100.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCch----HHHHHhcC---ChHHHHHHHccCCHHHHHHHHHHHhhcccc-
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKIN----KMLIVRSG---LVPPIVDVLMAGSAEAQEHACGAIFSLALD- 340 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~n----k~~i~~~g---~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~- 340 (546)
..+-.|+.+|+.-+.+..+....-+.. .. ... ...+...| .+..+.+.+.++...- ..|+.++..+...
T Consensus 311 ~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~ 387 (574)
T smart00638 311 AKFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTA 387 (574)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhh
Confidence 345566667765554444333333322 10 111 22233333 5666777777763222 1223333332211
Q ss_pred cchhhHHhhcCChHHHHHhhccC----CHHHHHHHHHHHHHhh----cCchhHHHHHhcCcHHHHHHHHhCc----h--H
Q 009036 341 DQNKTAIGVLGALPPLLHLLKSD----SERTQHDSALALYHLS----LVKSNRTKLVKLGSVNALLGMVNSG----H--M 406 (546)
Q Consensus 341 ~~~k~~i~~~g~l~~Lv~lL~~~----~~~~~~~A~~aL~~Ls----~~~~n~~~iv~~Gav~~Lv~lL~~~----~--~ 406 (546)
... ....+..+..+++++ ...++..|+.++.+|. ...+.+...+....++.|.+.|... + -
T Consensus 388 ~~P-----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 388 RYP-----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred hcC-----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 111 123566677777653 4556666666666553 3333222222233566666665431 1 2
Q ss_pred HHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHH
Q 009036 407 TGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRME 485 (546)
Q Consensus 407 ~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll 485 (546)
+-..+.+|.|+... ..+..+..++......+...+-.|+.+|..++.. ... +-+.|+.+.
T Consensus 463 ~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~---------v~~~l~~i~ 523 (574)
T smart00638 463 IQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK---------VQEVLLPIY 523 (574)
T ss_pred eeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH---------HHHHHHHHH
Confidence 33356666665431 3455666666532224577889999999877642 211 235666665
Q ss_pred hcC--CHHHHHHHHHHH
Q 009036 486 RVG--SEHVKEKAKRML 500 (546)
Q Consensus 486 ~~~--s~~~k~~A~~lL 500 (546)
.+. ++++|-.|..+|
T Consensus 524 ~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 524 LNRAEPPEVRMAAVLVL 540 (574)
T ss_pred cCCCCChHHHHHHHHHH
Confidence 554 455555544433
No 327
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=67.85 E-value=79 Score=36.69 Aligned_cols=176 Identities=15% Similarity=0.139 Sum_probs=101.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcC---ChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhhHHhh
Q 009036 274 LRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSG---LVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGV 349 (546)
Q Consensus 274 Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g---~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~ 349 (546)
+-..+.+.+..-+..|+..+........ + ....+ .+-.++.+.. +.+..+...|+..|..++..-.....=..
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~--~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK-K--EIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc-c--ccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 3344556777778888887776655433 1 11223 3344444333 44788888888888888654221111123
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHH
Q 009036 350 LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAV 427 (546)
Q Consensus 350 ~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i 427 (546)
.+.++.|++-+......++..++.++-..+-.. .-...++.+..++.+++ .+..+...|......... ..
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~--~~ 406 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP--KT 406 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC--cC
Confidence 568888998888876666665555554443310 11134556666777655 666666666555433222 12
Q ss_pred Hh----CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 428 LD----SGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 428 ~~----~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
.. .+.++.++....+ .+.+++..|..++..+-.
T Consensus 407 ~~~~t~~~l~p~~~~~~~D---~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHIND---TDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cchhhHHHHhHHHhhhccC---CcHHHHHHHHHHHHHHHH
Confidence 22 2455666666655 568889988888876643
No 328
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.77 E-value=2.5e+02 Score=32.97 Aligned_cols=232 Identities=13% Similarity=0.103 Sum_probs=121.6
Q ss_pred hhHHHHHHhcC------C--CCHHHHHHHHHHHHHHhcc---ChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHH
Q 009036 227 EQEDYFVQKLK------S--PQVHEVEEALISLRKLTRS---REETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVN 295 (546)
Q Consensus 227 ~~i~~lv~~L~------s--~~~~~~~~Al~~L~~La~~---~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~n 295 (546)
+.+.+++.-|. . .++....-|+..+..++.. ....+ ...+.=+++.+...+.++---.+..|++++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 44555555553 1 1344455566666665521 11111 11222234455556667777889999999999
Q ss_pred hhc-CCchHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccc-hhhHHhh--cCChHHHHHhhccCCHHHHHH
Q 009036 296 LSL-EKINKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQ-NKTAIGV--LGALPPLLHLLKSDSERTQHD 370 (546)
Q Consensus 296 Ls~-~~~nk~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~--~g~l~~Lv~lL~~~~~~~~~~ 370 (546)
++. +-.+...+. .++......|. +....++..|+-+|..+..+.+ .+..+.. .+.++.|+.+.+.-..+....
T Consensus 489 ~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 884 434333332 24666667676 6678899999999998877654 3454543 567777888777643333333
Q ss_pred HHHHH-HHhhc-CchhHHHHHhcCcHHHHHHHHhC----c-h---HHHHHHHHHHHhhC---CcccHHHHH-h-CC-cHH
Q 009036 371 SALAL-YHLSL-VKSNRTKLVKLGSVNALLGMVNS----G-H---MTGRVLLILGNLAS---CSDGRVAVL-D-SG-GVE 434 (546)
Q Consensus 371 A~~aL-~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~----~-~---~~e~al~~L~nLa~---~~e~r~~i~-~-~g-~i~ 434 (546)
.+..+ +..+. -.+....+.. .......+++.. . . -+-.|+++|..+.+ .-+++..+. + .. +++
T Consensus 567 vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~ 645 (1010)
T KOG1991|consen 567 VMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33322 22211 0111111111 234444455542 1 1 22234444444332 334444444 3 33 445
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHhcCC
Q 009036 435 CLVGMLRKGTELSESTQESCVSVLYALSHGG 465 (546)
Q Consensus 435 ~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~ 465 (546)
.+-.+|.+. -.+.-+.+..++..+....
T Consensus 646 vi~~iL~~~---i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 646 VIGFILKND---ITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHHHHHh---hHHHHHHHHHHHhhhhhhh
Confidence 555556552 2566677777777765543
No 329
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=67.37 E-value=53 Score=36.81 Aligned_cols=250 Identities=12% Similarity=0.084 Sum_probs=129.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHH
Q 009036 236 LKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPI 315 (546)
Q Consensus 236 L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~L 315 (546)
|...+.+++.+=...|.. ..+..-..++..-+++.|+..+.-++ .....+..+..+...-+... .+.++++.|
T Consensus 263 l~lks~~eK~~Ff~~L~~---~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p~l 335 (690)
T KOG1243|consen 263 LRLKSVEEKQKFFSGLID---RLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIPVL 335 (690)
T ss_pred cccCcHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhhhH
Confidence 344444444443333333 22223334444456677777665555 22223333443333211111 345789999
Q ss_pred HHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHH
Q 009036 316 VDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVN 395 (546)
Q Consensus 316 v~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~ 395 (546)
+.+++..+..+|..-+.-+.... +.....+.+...++.+..-+.+.++-++...+..+..|+.--.-+ -+......
T Consensus 336 ~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr 411 (690)
T KOG1243|consen 336 LKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLR 411 (690)
T ss_pred HHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHH
Confidence 99999999888855443333221 122334455678899999999999999999998888776511101 11112222
Q ss_pred HHHHHHhC--chHHHHHHHHHHHhhCCcccHHHHHhCC-cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009036 396 ALLGMVNS--GHMTGRVLLILGNLASCSDGRVAVLDSG-GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472 (546)
Q Consensus 396 ~Lv~lL~~--~~~~e~al~~L~nLa~~~e~r~~i~~~g-~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~ 472 (546)
.|..+-.+ +.++-+..-+|..++..- ...+..+ .+.+..+-+++. -...+..++.+|+..+..- ....++
T Consensus 412 ~~ar~q~d~~~~irtntticlgki~~~l---~~~~R~~vL~~aftralkdp---f~paR~a~v~~l~at~~~~-~~~~va 484 (690)
T KOG1243|consen 412 YLARLQPDEHGGIRTNTTICLGKIAPHL---AASVRKRVLASAFTRALKDP---FVPARKAGVLALAATQEYF-DQSEVA 484 (690)
T ss_pred HHHhhCccccCcccccceeeeccccccc---chhhhccccchhhhhhhcCC---CCCchhhhhHHHhhccccc-chhhhh
Confidence 23322222 124444444444333321 1111222 223333445442 2345677777777666532 222222
Q ss_pred HHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 473 AAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 473 ~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
.+ +++.|.-+.-+.+.-++..|-..++..-.
T Consensus 485 ~k--Ilp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 485 NK--ILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred hh--ccccccccccCcccchhhHHHHHHHHHHh
Confidence 22 56777777777777777777777766543
No 330
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.36 E-value=2.2e+02 Score=35.10 Aligned_cols=261 Identities=11% Similarity=0.052 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhc--CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHH
Q 009036 240 QVHEVEEALISLRKLTRSREETRVSLCT--PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVD 317 (546)
Q Consensus 240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~--~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~ 317 (546)
.|..+.-|+--+..+++.. +..+.. .-+||.|...=.+++..+|..-..+=..|..+..+...-.-..+++-|+.
T Consensus 970 ~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~ 1046 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLV 1046 (1702)
T ss_pred hhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 4555556666666555432 222221 23577777777788998886544444445445333322222346777777
Q ss_pred HHccCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHH---HHHHHHhhc---C--chhHHHH
Q 009036 318 VLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDS---ALALYHLSL---V--KSNRTKL 388 (546)
Q Consensus 318 lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A---~~aL~~Ls~---~--~~n~~~i 388 (546)
-|.+....+|+.++.+|.-|....++-...-. ......+++.+.+-...+|+.| +.+|..||. + +..+.+-
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 77788899999999999999877655333322 3445555565555344455443 345555543 1 1112221
Q ss_pred HhcCcHHHHHH--HHhC-chHHHHHHHHHHHhhCCcccHHHHH--hCCcHHHHHHHHccCCC--------CCHHHHHHHH
Q 009036 389 VKLGSVNALLG--MVNS-GHMTGRVLLILGNLASCSDGRVAVL--DSGGVECLVGMLRKGTE--------LSESTQESCV 455 (546)
Q Consensus 389 v~~Gav~~Lv~--lL~~-~~~~e~al~~L~nLa~~~e~r~~i~--~~g~i~~Lv~lL~~~~~--------~s~~~~e~Av 455 (546)
+-.-++|.|++ +++. .+++.-++.+|..|+....+ ++. -...|+.|++.+..-++ ........|+
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~--~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~eal 1204 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK--ELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEAL 1204 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh--hhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHH
Confidence 21223444332 1211 23788899999999876543 222 13456666666554221 0011222333
Q ss_pred HHHH-HHhcCChhhHH---------HHHHCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhhc
Q 009036 456 SVLY-ALSHGGLRFKG---------LAAAAGMAEVLMRMERVG-SEHVKEKAKRMLELMKG 505 (546)
Q Consensus 456 ~~L~-~L~~~~~~~~~---------~~~~~g~v~~L~~ll~~~-s~~~k~~A~~lL~~L~~ 505 (546)
..+. +.+..++-... .-.-+..++.+.++++.+ +-.+|-.++..+..|..
T Consensus 1205 Dt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~ 1265 (1702)
T KOG0915|consen 1205 DTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQ 1265 (1702)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHH
Confidence 3332 12222221110 001122677888887766 45556566666665543
No 331
>PF04641 Rtf2: Rtf2 RING-finger
Probab=67.35 E-value=4.3 Score=40.36 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=31.4
Q ss_pred CCceeCcccccccCCCeec-CCCccccHHHHHHHHhc
Q 009036 43 PGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTL 78 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~ 78 (546)
-.-+.|+|+++.+++||+. .-|+-|.+..|..|+-.
T Consensus 32 ~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~ 68 (260)
T PF04641_consen 32 ARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD 68 (260)
T ss_pred CCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence 3567899999999999975 67999999999999854
No 332
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=67.23 E-value=4.5 Score=31.94 Aligned_cols=42 Identities=26% Similarity=0.278 Sum_probs=29.9
Q ss_pred eCcccccccC----CCeec-CCCccccHHHHHHHHhcCCCCCCCCCCC
Q 009036 47 LCPVSGSLMA----DPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTT 89 (546)
Q Consensus 47 ~CpI~~~~m~----dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~ 89 (546)
.||-|.-=|. =||+- -|.|.|---||.+|++. ..-||.+++.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~ 79 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQT 79 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCce
Confidence 4666665441 14444 78999999999999986 4478877765
No 333
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=67.15 E-value=1.6e+02 Score=30.33 Aligned_cols=151 Identities=15% Similarity=0.085 Sum_probs=106.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhc-CC-chHHHHHhc-C-ChHHHHHHHccC-----C--------HHHHHHHHHH
Q 009036 271 LLALRSLIISRYTNVQVNAVAALVNLSL-EK-INKMLIVRS-G-LVPPIVDVLMAG-----S--------AEAQEHACGA 333 (546)
Q Consensus 271 i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~-~nk~~i~~~-g-~l~~Lv~lL~~~-----~--------~~~~~~Aa~~ 333 (546)
+..+...|.+....+...++..|..+.. +. .....+.+. . -.+.+..++... . +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888888888889999998887 43 334444332 2 345666666421 1 2788888887
Q ss_pred Hhhccccc--chhhHH-hhcCChHHHHHhhccCCHHHHHHHHHHHHH-hhcC----chhHHHHHhcCcHHHHHHHHhC--
Q 009036 334 IFSLALDD--QNKTAI-GVLGALPPLLHLLKSDSERTQHDSALALYH-LSLV----KSNRTKLVKLGSVNALLGMVNS-- 403 (546)
Q Consensus 334 L~~Ls~~~--~~k~~i-~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~-Ls~~----~~n~~~iv~~Gav~~Lv~lL~~-- 403 (546)
+..+.... ..+..+ ...+.+..+++-|..++.++....+.+|.. +... ...|.++....++..|+.+...
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 77665543 344444 456789999999999999999999988885 4433 2356677777888888886653
Q ss_pred c----hHHHHHHHHHHHhhCCc
Q 009036 404 G----HMTGRVLLILGNLASCS 421 (546)
Q Consensus 404 ~----~~~e~al~~L~nLa~~~ 421 (546)
+ .+.+.+-..|..+|..+
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 3 37888999999999754
No 334
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=66.60 E-value=2.1e+02 Score=31.70 Aligned_cols=130 Identities=18% Similarity=0.103 Sum_probs=73.3
Q ss_pred ChHHHHHHHccC----CHHHHHHHHHHHhhccc----ccchhhHHhhcCChHHHHHhhcc----CCHHHHHHHHHHHHHh
Q 009036 311 LVPPIVDVLMAG----SAEAQEHACGAIFSLAL----DDQNKTAIGVLGALPPLLHLLKS----DSERTQHDSALALYHL 378 (546)
Q Consensus 311 ~l~~Lv~lL~~~----~~~~~~~Aa~~L~~Ls~----~~~~k~~i~~~g~l~~Lv~lL~~----~~~~~~~~A~~aL~~L 378 (546)
.+..+..++.+. .+.++..|..++.+|.. ..+..........++.|...|.. ++.+.+..++.+|.|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 456666777653 45566666666666543 11111111112355566655543 3455556777888887
Q ss_pred hcCchhHHHHHhcCcHHHHHHHHh-Cc----hHHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHH
Q 009036 379 SLVKSNRTKLVKLGSVNALLGMVN-SG----HMTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQE 452 (546)
Q Consensus 379 s~~~~n~~~iv~~Gav~~Lv~lL~-~~----~~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e 452 (546)
-.. ..++.|..++. +. .++-.|+.+|..++. +++ .+-+.++.++.+.. .+.+++-
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~-e~~EvRi 534 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRA-EPPEVRM 534 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCC-CChHHHH
Confidence 442 24555565655 22 278889999988764 332 23456777776643 4566776
Q ss_pred HHHHHHH
Q 009036 453 SCVSVLY 459 (546)
Q Consensus 453 ~Av~~L~ 459 (546)
.|+.+|.
T Consensus 535 aA~~~lm 541 (574)
T smart00638 535 AAVLVLM 541 (574)
T ss_pred HHHHHHH
Confidence 6666554
No 335
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=66.26 E-value=1.3e+02 Score=29.17 Aligned_cols=151 Identities=21% Similarity=0.173 Sum_probs=88.8
Q ss_pred HHHhc-CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcC
Q 009036 232 FVQKL-KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSG 310 (546)
Q Consensus 232 lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g 310 (546)
++..+ +..+++.+...++.|-.++.++.. ...-++..|..+...++...+..+...+..+.....--- +
T Consensus 5 L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~-----~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----~ 74 (234)
T PF12530_consen 5 LLYKLGKISDPELQLPLLEALPSLACHKNV-----CVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----P 74 (234)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHhccCcc-----chhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----H
Confidence 44433 566788899999999999987621 112235666666667777766566666666655322111 2
Q ss_pred ChHHHHHH--H------ccC--CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhh
Q 009036 311 LVPPIVDV--L------MAG--SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLL-KSDSERTQHDSALALYHLS 379 (546)
Q Consensus 311 ~l~~Lv~l--L------~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~~Ls 379 (546)
.+..++.. + ..+ ..+.....+..+..++....+ .-...++.|..+| ++.++.++..++.+|..||
T Consensus 75 ~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 75 FLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 33333333 1 111 334444445666666665444 1123677777888 6778888899999999998
Q ss_pred cCchhHHHHHhc-CcHHHHHHHH
Q 009036 380 LVKSNRTKLVKL-GSVNALLGMV 401 (546)
Q Consensus 380 ~~~~n~~~iv~~-Gav~~Lv~lL 401 (546)
. ..+++. .+...+..-|
T Consensus 151 ~-----~~vvd~~s~w~vl~~~l 168 (234)
T PF12530_consen 151 E-----AEVVDFYSAWKVLQKKL 168 (234)
T ss_pred H-----HhhccHHHHHHHHHHhc
Confidence 3 233333 3445555544
No 336
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=66.05 E-value=27 Score=32.04 Aligned_cols=108 Identities=16% Similarity=0.085 Sum_probs=66.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhc--CChHHHHHHHccC-CHHHHHHHHHHHhhcccc----cc
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRS--GLVPPIVDVLMAG-SAEAQEHACGAIFSLALD----DQ 342 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~--g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~----~~ 342 (546)
.+..+..+|.+.++..+..++..+..++.... .+.+.+. ..+..|+.+|+.. ...+++.++.+|..|... ++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34556677788888888777777766654322 3344333 3688899999876 567778888877766432 23
Q ss_pred hhhHHhh---cCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036 343 NKTAIGV---LGALPPLLHLLKSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 343 ~k~~i~~---~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~ 380 (546)
....+.. .+.++.++.++++ ......++.+|..|-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 3333332 3455566666654 3455666666666644
No 337
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=65.47 E-value=30 Score=31.02 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=57.5
Q ss_pred CcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhhc
Q 009036 431 GGVECLVGMLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERV-GSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 431 g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~-~s~~~k~~A~~lL~~L~~ 505 (546)
.++..|.+.|.+ .++.++..|+.+|-.+..+ +..+...+.....+..|..++.. ..+.+++++..+++..+.
T Consensus 37 ~a~ral~KRl~~---~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNH---KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 366777788877 4688999999998888764 44566666667788889999887 789999999999998874
No 338
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=65.24 E-value=55 Score=29.87 Aligned_cols=141 Identities=14% Similarity=0.123 Sum_probs=74.9
Q ss_pred CChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHH
Q 009036 310 GLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKL 388 (546)
Q Consensus 310 g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~i 388 (546)
..++.|+.+|+.+ +..+|..+.++|..|-..|..+....... ...-. -...+..... ..+.+... ...-...
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~~~~~--~~~~~~~~~~---~~l~~~~~-~~~~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-LDSKS--SENSNDESTD---ISLPMMGI-SPSSEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-CCccc--cccccccchh---hHHhhccC-CCchHHH
Confidence 3567788888876 78999999999999977776654422210 00000 0011111111 11221111 1123334
Q ss_pred HhcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHHh-CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 009036 389 VKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVLD-SGGVECLVGMLRKGTELSESTQESCVSVLYAL 461 (546)
Q Consensus 389 v~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~~-~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L 461 (546)
.-.-++..|+.+|.++. -...++.++.++... .+...+-- ...+|.++..++.. +...+|....-|..|
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~-l~~~cv~~L~~viP~~l~~i~~~---~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKS-LGLKCVPYLPQVIPIFLRVIRTC---PDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh-cCcCchhHHHHHhHHHHHHHHhC---CHHHHHHHHHHHHHH
Confidence 44457888999998865 233455565555533 22222211 34778888888864 245666655544443
No 339
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=64.92 E-value=1.1e+02 Score=34.42 Aligned_cols=167 Identities=18% Similarity=0.115 Sum_probs=85.9
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhcCC-chHHHHHhcCChHHHHHHHcc----CCHHHHHHHHHHHhhccccc--c
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSLEK-INKMLIVRSGLVPPIVDVLMA----GSAEAQEHACGAIFSLALDD--Q 342 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~nk~~i~~~g~l~~Lv~lL~~----~~~~~~~~Aa~~L~~Ls~~~--~ 342 (546)
.+..+..++.+...... .|...|..|.... .-- ...+..+..+++. .++.++..|+..+..|.... .
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 56666666665433222 2444444443321 111 1234555556653 35667777777766664321 0
Q ss_pred --------hhhHHhhcCChHHHHHhhc----cCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc-h----
Q 009036 343 --------NKTAIGVLGALPPLLHLLK----SDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG-H---- 405 (546)
Q Consensus 343 --------~k~~i~~~g~l~~Lv~lL~----~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~-~---- 405 (546)
..........++.|...|. .++...+..++.+|.|+-. ...++.|..++.+. .
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchH
Confidence 0111112345666666665 2466777888999999843 13677777777665 2
Q ss_pred HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036 406 MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYA 460 (546)
Q Consensus 406 ~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~ 460 (546)
++-.|+.+|..++.... ..+.+.++.++.+.. .+.+++-.|..+|..
T Consensus 540 ~R~~Ai~Alr~~~~~~~-------~~v~~~l~~I~~n~~-e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCP-------EKVREILLPIFMNTT-EDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHTTTTGGGT-H-------HHHHHHHHHHHH-TT-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCc-------HHHHHHHHHHhcCCC-CChhHHHHHHHHHHh
Confidence 66777777776643221 123467777777743 346677666655543
No 340
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=64.29 E-value=1.7e+02 Score=29.79 Aligned_cols=195 Identities=13% Similarity=0.117 Sum_probs=119.5
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc-----CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT-----PRLLLALRSLIISRYTNVQVNAVAALVNLSLEK 300 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~-----~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~ 300 (546)
.+....++..|...+.+.+..++....++-+..-..|...++ ...+..|+.--.. .+++--.+-..|.....++
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe 156 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHE 156 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhH
Confidence 455677888888888888888888877777655444443332 3334444433111 1333322333344444444
Q ss_pred chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch--hhHHhh--cCChHH-HHHhhccCCHHHHHHHHHHH
Q 009036 301 INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN--KTAIGV--LGALPP-LLHLLKSDSERTQHDSALAL 375 (546)
Q Consensus 301 ~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~--~g~l~~-Lv~lL~~~~~~~~~~A~~aL 375 (546)
.-.+.|....-+.......+.++-++...|..+...+...... .+.+.. ....+. --.++++++--.++.+..+|
T Consensus 157 ~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kll 236 (342)
T KOG1566|consen 157 FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLL 236 (342)
T ss_pred HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhH
Confidence 4444444555566666666666667777777776665443311 222211 112233 45677888989999999999
Q ss_pred HHhhcCchhHHHHHhc----CcHHHHHHHHhCch--HHHHHHHHHHHhhCCc
Q 009036 376 YHLSLVKSNRTKLVKL----GSVNALLGMVNSGH--MTGRVLLILGNLASCS 421 (546)
Q Consensus 376 ~~Ls~~~~n~~~iv~~----Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~ 421 (546)
..+-..+.|-..|... ...+.++.+|.++. ++-.|--+.+....++
T Consensus 237 g~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 237 GELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 9998877776555433 67888999998765 7888888887776654
No 341
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=64.23 E-value=26 Score=30.48 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=51.3
Q ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-CChhhHHHHHH-CCcHHHHHHHHh-----cC---CHHHHHHHHHHHH
Q 009036 432 GVECLVGMLRKGTELSESTQESCVSVLYALSH-GGLRFKGLAAA-AGMAEVLMRMER-----VG---SEHVKEKAKRMLE 501 (546)
Q Consensus 432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~-~~~~~~~~~~~-~g~v~~L~~ll~-----~~---s~~~k~~A~~lL~ 501 (546)
++..|.+.|.. .++-++..++.+|..||. +++.++..+.. ...|..+..+-. .| +..+|..|.+++.
T Consensus 39 i~d~L~kRL~~---~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 39 LLEYLLKRLKR---SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHhcC---CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 44666777776 457788999999999998 55566665543 445566666543 12 5789999999999
Q ss_pred HhhcC
Q 009036 502 LMKGR 506 (546)
Q Consensus 502 ~L~~~ 506 (546)
.|...
T Consensus 116 ~if~~ 120 (122)
T cd03572 116 AIFSY 120 (122)
T ss_pred HHhcc
Confidence 98754
No 342
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=64.06 E-value=28 Score=30.65 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=56.5
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC--chHHHHHhcCChHHHHHHHcc---CCHHHHHHHHHHHhhccc
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEK--INKMLIVRSGLVPPIVDVLMA---GSAEAQEHACGAIFSLAL 339 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~--~nk~~i~~~g~l~~Lv~lL~~---~~~~~~~~Aa~~L~~Ls~ 339 (546)
.++..|.+-|.++++.++..|+.+|-.+..+. .....+....++..|+.++.. .+.+++..+..+|...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 35677777888899999999999999988864 356666666788889999975 378999999998887654
No 343
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=63.66 E-value=2.2e+02 Score=30.81 Aligned_cols=277 Identities=15% Similarity=0.143 Sum_probs=129.5
Q ss_pred hhHHHHHHhc--CCCCHHHHHHHHHHHHHHhccChh----hhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC
Q 009036 227 EQEDYFVQKL--KSPQVHEVEEALISLRKLTRSREE----TRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE 299 (546)
Q Consensus 227 ~~i~~lv~~L--~s~~~~~~~~Al~~L~~La~~~~~----~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~ 299 (546)
..++...+-| ...+.+.|..+++.|..+.+..+. .|..+. ..+. ...++.-..-+.+|..|+.+
T Consensus 27 ~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF---------~~I~~~~~~~d~~~~l~aL~~LT~~ 97 (464)
T PF11864_consen 27 EEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFF---------RDISDPSNDDDFDLRLEALIALTDN 97 (464)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHH---------HHHhcCCCchhHHHHHHHHHHHHcC
Confidence 4566777766 333567888888888888776542 222221 1122 22333333445556666554
Q ss_pred CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHH-hhcCChHHHHHhh----ccC----CHHHHH
Q 009036 300 KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAI-GVLGALPPLLHLL----KSD----SERTQH 369 (546)
Q Consensus 300 ~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i-~~~g~l~~Lv~lL----~~~----~~~~~~ 369 (546)
-.+-.. .+.+..+.|...|..--..++ .+-.....-.... .+...+ .+.+.+..|+.++ +-. +.....
T Consensus 98 Grdi~~-~~~~i~~~L~~wl~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~ 175 (464)
T PF11864_consen 98 GRDIDF-FEYEIGPFLLSWLEPSYQAAR-SARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEIS 175 (464)
T ss_pred CcCchh-cccchHHHHHHHHHHHHHHHH-HHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 322222 456677888877753211010 0000000001111 001100 1223333444333 321 334444
Q ss_pred HHHHHHHHhhcCchhHH----------HHHhcCcHH-----HHHHHHhC----chHHHHHHHHHHHhhCCcccHHHHHhC
Q 009036 370 DSALALYHLSLVKSNRT----------KLVKLGSVN-----ALLGMVNS----GHMTGRVLLILGNLASCSDGRVAVLDS 430 (546)
Q Consensus 370 ~A~~aL~~Ls~~~~n~~----------~iv~~Gav~-----~Lv~lL~~----~~~~e~al~~L~nLa~~~e~r~~i~~~ 430 (546)
..+.-++.+|....+.. .++..|.|| .++..|.. .+....+-.++.||+...-|..
T Consensus 176 ~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~----- 250 (464)
T PF11864_consen 176 SLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHS----- 250 (464)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHH-----
Confidence 44555555554322211 222223222 34444432 2356667777778776554433
Q ss_pred CcHHHHHHHHccCCC---CCHHHHHHHHHHHHHHhcCC--hhhHHHHHHC--CcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009036 431 GGVECLVGMLRKGTE---LSESTQESCVSVLYALSHGG--LRFKGLAAAA--GMAEVLMRMERVGSEHVKEKAKRMLELM 503 (546)
Q Consensus 431 g~i~~Lv~lL~~~~~---~s~~~~e~Av~~L~~L~~~~--~~~~~~~~~~--g~v~~L~~ll~~~s~~~k~~A~~lL~~L 503 (546)
++..|..+|..... .+.....-|+.+|..+..+. .+... +.-. -+++.|...++.+++.+--....++..|
T Consensus 251 -~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~-l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~l 328 (464)
T PF11864_consen 251 -AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPS-LPFSPSSVLPSLLNALKSNSPRVDYEILLLINRL 328 (464)
T ss_pred -HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcce-ecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHH
Confidence 45677788843211 23344556777776665543 12211 1111 1567777778877777655555555555
Q ss_pred hcCCccc-cccCChHHHHh
Q 009036 504 KGRAEEE-EEGVDWDELLD 521 (546)
Q Consensus 504 ~~~~~~~-~~~~~~~~~~~ 521 (546)
-...... -...+|+.+++
T Consensus 329 l~~~~~~~l~~~~W~~~~~ 347 (464)
T PF11864_consen 329 LDGKYGRELSEEDWDIILD 347 (464)
T ss_pred HhHhhhhhhcccCchHHHH
Confidence 4211112 24557877654
No 344
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=63.47 E-value=7.6 Score=28.38 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=19.8
Q ss_pred CceeCcccccccCCCeecCCCccccHHHHHHHHhc------CCCCCCCCCC
Q 009036 44 GEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL------GFTPTLVDGT 88 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~------~~~~cp~~~~ 88 (546)
+.|.||.|++ .|+...+.+.+.. ..-.||.|..
T Consensus 1 ~~f~CP~C~~------------~~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGK------------GFSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCC------------ccCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 4688999876 3444555454322 2237999954
No 345
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=63.46 E-value=24 Score=29.02 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=50.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc
Q 009036 313 PPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK 382 (546)
Q Consensus 313 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~ 382 (546)
...+.-|.++.+-+|.++...|..|..... ...+...+.+..+...|+++++-+--+|+..|..|+...
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 344555677778899999999998877655 222223567777788888888888889999999888743
No 346
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=63.43 E-value=8.7 Score=33.60 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=39.8
Q ss_pred CCceeCcccccccCCCeec----CCCccccHHHHHH-HHhcC-CCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMADPVVV----SSGHTFERACAHV-CKTLG-FTPTLVDGTTPDF 92 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~----~~G~ty~r~~i~~-~~~~~-~~~cp~~~~~~~~ 92 (546)
|.-+.|-||.|.-.|+-.+ .||.+.|-.|-.. |--.. +..||.|...+..
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 4678899999999999887 6899999999988 54333 4469999776543
No 347
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=62.96 E-value=33 Score=38.52 Aligned_cols=132 Identities=14% Similarity=0.138 Sum_probs=76.3
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHH-ccCCHHHHHHHHHHHhhcccccchhhHH
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVL-MAGSAEAQEHACGAIFSLALDDQNKTAI 347 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL-~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i 347 (546)
.++|.|...+++.+..+|+.++.++-..+..-+ ...++.-++|.|-.+. +..+..++.+++.++..+. +..+..
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~~ 463 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDKA 463 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHHH
Confidence 456777777777888888888888877665322 2233444666666653 3447778888888887776 111111
Q ss_pred hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch
Q 009036 348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH 405 (546)
Q Consensus 348 ~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~ 405 (546)
.....+.++.+-.+..++.++...+.+..++.....+...+....++|.++-+...+.
T Consensus 464 ~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 464 AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 1112334444444455677655555555555544333344444467777777665543
No 348
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=62.91 E-value=81 Score=38.57 Aligned_cols=140 Identities=12% Similarity=0.101 Sum_probs=76.9
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-CchhHHHH
Q 009036 310 GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-VKSNRTKL 388 (546)
Q Consensus 310 g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~~n~~~i 388 (546)
+.+..++.+|....+.+|..|+.+|..+...+.. .+....+-..+-.-+.+.+..+|..|+.++...-. .++.-.+.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 3567777778877888888999998888765432 11112223333344455567788888877775432 33332222
Q ss_pred HhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 009036 389 VKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYAL 461 (546)
Q Consensus 389 v~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L 461 (546)
.+ .+.+-+.+.. ++.+++++|+-+|.....-.. .+..++++|++.++....+++.+..++..+
T Consensus 894 Y~-----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-----i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 894 YD-----QIIERILDTGVSVRKRVIKILRDICEETPDFSK-----IVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HH-----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-----HHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 22 2333333332 889999999999864332222 223444555443211112455555555544
No 349
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.53 E-value=38 Score=37.19 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=66.6
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG 348 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~ 348 (546)
|.+.-++..+.+.+..++...+.+|..++..-.--....-.|.+..|.+-+-...+-+|..|..+|..+-....+.+-
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-- 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-- 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH--
Confidence 566667777778999999999999988775432222223345666666666666788999999999877543322111
Q ss_pred hcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcC
Q 009036 349 VLGALPPLLHLLKSD-SERTQHDSALALYHLSLV 381 (546)
Q Consensus 349 ~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~ 381 (546)
.....|+.+++.+ +.++++.| |.|+.-.
T Consensus 169 --~~~n~l~~~vqnDPS~EVRr~a---llni~vd 197 (885)
T COG5218 169 --RIVNLLKDIVQNDPSDEVRRLA---LLNISVD 197 (885)
T ss_pred --HHHHHHHHHHhcCcHHHHHHHH---HHHeeeC
Confidence 1223556666654 56676654 4454433
No 350
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=61.67 E-value=3.2e+02 Score=31.96 Aligned_cols=151 Identities=12% Similarity=0.060 Sum_probs=98.2
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc--cCCHHHHHHHHHHHHHhhcCchhHHH
Q 009036 310 GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK--SDSERTQHDSALALYHLSLVKSNRTK 387 (546)
Q Consensus 310 g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~--~~~~~~~~~A~~aL~~Ls~~~~n~~~ 387 (546)
+++..|.++....+.++-...+.+|...+..+.-...-.+....|.++.++. ++++.+...+-.++..|+....|...
T Consensus 530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~ 609 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP 609 (1005)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc
Confidence 4566666666666788888888888887776655554455566777776653 36788878888888888886666555
Q ss_pred HHhcCcHHHHHHHHhCch------HHHHHHHHHHHhhCCccc-HHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036 388 LVKLGSVNALLGMVNSGH------MTGRVLLILGNLASCSDG-RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYA 460 (546)
Q Consensus 388 iv~~Gav~~Lv~lL~~~~------~~e~al~~L~nLa~~~e~-r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~ 460 (546)
+.+. .+|.|+..+.... .+.-++.+|..+.+.... -....-.-+.|++.++.-.. ++...-+++-.+|..
T Consensus 610 m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHs--dD~~tlQ~~~EcLra 686 (1005)
T KOG2274|consen 610 MQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHS--DDHETLQNATECLRA 686 (1005)
T ss_pred hHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeec--CChHHHHhHHHHHHH
Confidence 5554 8999999987532 556677777655543221 11111123567777776553 456777777777776
Q ss_pred Hhc
Q 009036 461 LSH 463 (546)
Q Consensus 461 L~~ 463 (546)
+-.
T Consensus 687 ~Is 689 (1005)
T KOG2274|consen 687 LIS 689 (1005)
T ss_pred HHh
Confidence 654
No 351
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=61.53 E-value=1.8e+02 Score=28.97 Aligned_cols=206 Identities=14% Similarity=0.016 Sum_probs=116.3
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhhcCCchHHHHHhcCC
Q 009036 234 QKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS--RYTNVQVNAVAALVNLSLEKINKMLIVRSGL 311 (546)
Q Consensus 234 ~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~ 311 (546)
..|.+.+...|.+|+..|......-+... ....-+..|+.+..+ .|......++..+..|........ +.
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~-----~~ 77 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP-----ES 77 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh-----hh
Confidence 34678889999999999988765533221 222235566655433 355555555666665553222111 11
Q ss_pred hHHHHH-HHcc-----CCHHHHHHHHHHHhhcccccchhhHHhh--cCChHHHHHhhccC-CHHHHHHHHHHHHHhhcCc
Q 009036 312 VPPIVD-VLMA-----GSAEAQEHACGAIFSLALDDQNKTAIGV--LGALPPLLHLLKSD-SERTQHDSALALYHLSLVK 382 (546)
Q Consensus 312 l~~Lv~-lL~~-----~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~ 382 (546)
...++. ++++ -....|.....+|..|... ....+.. ...+..+++.+..+ +|+-...+...+..+...-
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 222222 2222 2445677777777777544 2333332 35777888888764 8887777777766665432
Q ss_pred hhHHHHHhcCcHHHHHHHHhC---------c-h----HHH-HHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCC
Q 009036 383 SNRTKLVKLGSVNALLGMVNS---------G-H----MTG-RVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELS 447 (546)
Q Consensus 383 ~n~~~iv~~Gav~~Lv~lL~~---------~-~----~~e-~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s 447 (546)
+ . ...++.|.+.+.- + + .++ ...++...|+..+. ...-+++.|++.|.++ +
T Consensus 156 ~-----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~s~---~ 221 (262)
T PF14500_consen 156 D-----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLDST---S 221 (262)
T ss_pred c-----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHcCC---C
Confidence 2 1 2344555555532 1 1 222 23344444444332 2235789999999984 5
Q ss_pred HHHHHHHHHHHHHHhc
Q 009036 448 ESTQESCVSVLYALSH 463 (546)
Q Consensus 448 ~~~~e~Av~~L~~L~~ 463 (546)
..++..++.+|...+.
T Consensus 222 ~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 222 PSVKLDSLQTLKACIE 237 (262)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 6789999999887654
No 352
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=61.00 E-value=29 Score=30.97 Aligned_cols=70 Identities=10% Similarity=0.069 Sum_probs=56.1
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcC--CchHHHHHhcCChHHHHHHHcc------CCHHHHHHHHHHHhhcc
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLE--KINKMLIVRSGLVPPIVDVLMA------GSAEAQEHACGAIFSLA 338 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~nk~~i~~~g~l~~Lv~lL~~------~~~~~~~~Aa~~L~~Ls 338 (546)
.++..|.+-|.+.++.++-.|+.+|-.+..+ ......+...+++..|+.++.. .+..++...+.+|..-+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3577788888899999999999999988886 4566777788899999999963 36788888888877654
No 353
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=60.51 E-value=1.8e+02 Score=28.84 Aligned_cols=217 Identities=15% Similarity=0.065 Sum_probs=109.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccchhhHHhh
Q 009036 273 ALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQNKTAIGV 349 (546)
Q Consensus 273 ~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~ 349 (546)
.|-..|.++|..+|..|+..|..+... +... ....-+..|+..+.+. +......++..|..|.......... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-A 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence 345677889999999998888765543 2211 1112245555555432 4555555566665554322211100 0
Q ss_pred cCChHHHHHhhc--cCCHHHHHHHHHHHHHhhcCchhHHHHHh--cCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcc
Q 009036 350 LGALPPLLHLLK--SDSERTQHDSALALYHLSLVKSNRTKLVK--LGSVNALLGMVNSGH---MTGRVLLILGNLASCSD 422 (546)
Q Consensus 350 ~g~l~~Lv~lL~--~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~--~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e 422 (546)
...+..+++-.. +-.+..|..+...|..|.... ...+.. .+.+..+++++.... ..-.+..++..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 112223322211 124456677777777775542 233322 256777777776432 22334444444433221
Q ss_pred cHHHHHhCCcHHHHHHHHcc-------CCCCCH--HHHHHHHHHH-HHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHH
Q 009036 423 GRVAVLDSGGVECLVGMLRK-------GTELSE--STQESCVSVL-YALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHV 492 (546)
Q Consensus 423 ~r~~i~~~g~i~~Lv~lL~~-------~~~~s~--~~~e~Av~~L-~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~ 492 (546)
. ......+.+.+.. ..+.++ -.++.-...| ..++ .++.... -+++.|++-+.+.++.+
T Consensus 157 -----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~fa~-----~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 157 -----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLFAP-----FAFPLLLEKLDSTSPSV 224 (262)
T ss_pred -----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhhHH-----HHHHHHHHHHcCCCcHH
Confidence 1 2233444444321 111111 1223323333 3333 2222322 26799999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 009036 493 KEKAKRMLELMKGRA 507 (546)
Q Consensus 493 k~~A~~lL~~L~~~~ 507 (546)
|.-+...|..+...-
T Consensus 225 K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 225 KLDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999998877643
No 354
>PLN02189 cellulose synthase
Probab=60.24 E-value=6 Score=46.20 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=36.1
Q ss_pred eeCcccccc-----cCCCeec--CCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 46 FLCPVSGSL-----MADPVVV--SSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 46 ~~CpI~~~~-----m~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
-.|.||++- +-+|-+. .||--.||.|.|-=.++|+..||.|+....
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 379999984 4567664 688889999996656678999999987654
No 355
>PLN02195 cellulose synthase A
Probab=59.88 E-value=6.9 Score=45.44 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=36.9
Q ss_pred eCccccc-----ccCCCeec--CCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 47 LCPVSGS-----LMADPVVV--SSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 47 ~CpI~~~-----~m~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
.|.||++ .+-||-+. .||.-.||.|.+-=.++|+..||.|+....
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 5999998 46678775 889999999996555678999999998776
No 356
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.72 E-value=5.8 Score=41.78 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=24.5
Q ss_pred ceeCcccc-cccCC---CeecCCCccccHHHHHHHHh
Q 009036 45 EFLCPVSG-SLMAD---PVVVSSGHTFERACAHVCKT 77 (546)
Q Consensus 45 ~~~CpI~~-~~m~d---PV~~~~G~ty~r~~i~~~~~ 77 (546)
...|+||. +.+.. --+..|||.||..|..++++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 56799999 33222 12568999999999999886
No 357
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=58.62 E-value=4.4 Score=40.47 Aligned_cols=27 Identities=19% Similarity=0.507 Sum_probs=19.8
Q ss_pred ceeCcccccccC--CC-eecCCCccccHHH
Q 009036 45 EFLCPVSGSLMA--DP-VVVSSGHTFERAC 71 (546)
Q Consensus 45 ~~~CpI~~~~m~--dP-V~~~~G~ty~r~~ 71 (546)
.|.||+|..-|. +. ..=+.||+||..-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 389999999985 33 2236689998764
No 358
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=56.32 E-value=6.9 Score=29.74 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=9.2
Q ss_pred cccHHHHHHHHhc
Q 009036 66 TFERACAHVCKTL 78 (546)
Q Consensus 66 ty~r~~i~~~~~~ 78 (546)
-|||.|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999864
No 359
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=55.38 E-value=15 Score=33.02 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=21.4
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHhhcccc
Q 009036 312 VPPIVDVLMAGSAEAQEHACGAIFSLALD 340 (546)
Q Consensus 312 l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~ 340 (546)
|.+|+++|.+.+.++...|+.+|.+-...
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 89999999998999999999999875443
No 360
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=55.04 E-value=73 Score=26.97 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=51.8
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHc------cCCHHHHHHHHHHHHHh
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLII------SRYTNVQVNAVAALVNL 296 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~------s~~~~v~~~A~~~L~nL 296 (546)
......|.++|.+.++.++.+|+..|..+.+.+. .....+....++..++.+.. ..+..+++.+...+...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999864 45566666666666655311 23667777777666543
No 361
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=54.89 E-value=1.2e+02 Score=25.31 Aligned_cols=64 Identities=22% Similarity=0.179 Sum_probs=46.6
Q ss_pred CcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036 392 GSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL 458 (546)
Q Consensus 392 Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L 458 (546)
+.+..|++-+.... ..+.++..|..|...+.+...+.+-|++..|-++-.. .++..+...-.+|
T Consensus 30 ~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~---~~~~~~~~id~il 95 (98)
T PF14726_consen 30 LLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPN---VEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhc---CCHHHHHHHHHHH
Confidence 56666777666544 7888999999999999999999999999886555544 3355555544444
No 362
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=53.91 E-value=6.2 Score=28.54 Aligned_cols=15 Identities=33% Similarity=0.984 Sum_probs=12.6
Q ss_pred CCCCCCceeCccccc
Q 009036 39 TAEPPGEFLCPVSGS 53 (546)
Q Consensus 39 ~~~~p~~~~CpI~~~ 53 (546)
-.++|+++.||+|+.
T Consensus 28 f~~Lp~~w~CP~C~a 42 (50)
T cd00730 28 FEDLPDDWVCPVCGA 42 (50)
T ss_pred HhHCCCCCCCCCCCC
Confidence 347999999999975
No 363
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.83 E-value=8.4 Score=39.38 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=36.3
Q ss_pred ceeCcccccccCCCeecCCCc-cccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 45 EFLCPVSGSLMADPVVVSSGH-TFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV~~~~G~-ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
--.|=||+.=-+|=|++||-| -.|..|-+. +.=.+.-||.|++++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~-Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKS-LRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHH-HHHhhcCCCccccchHh
Confidence 356999999999999999999 579999754 22234469999987643
No 364
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=53.19 E-value=1.2e+02 Score=37.15 Aligned_cols=109 Identities=11% Similarity=0.059 Sum_probs=69.0
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccc-ccchhhHH
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL-DDQNKTAI 347 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i 347 (546)
+.+..++..|..+-..++..|+.+|.++...+..- +....+-..+-.-+.+.+..+|+.|..++..... .++.-..+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v--L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSV--LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh--hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 35667777788888899999999999987643211 0111222333344556678899999999875433 22221111
Q ss_pred hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh
Q 009036 348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN 384 (546)
Q Consensus 348 ~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n 384 (546)
...+..-+.+....+|+.++..|+.+|...++
T Consensus 894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 894 -----YDQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred -----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 22333334455778999999999999975443
No 365
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=52.96 E-value=2.3e+02 Score=27.56 Aligned_cols=128 Identities=14% Similarity=0.120 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc---------h-----------HHHHHHHHHHHhhCCccc
Q 009036 364 SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG---------H-----------MTGRVLLILGNLASCSDG 423 (546)
Q Consensus 364 ~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~---------~-----------~~e~al~~L~nLa~~~e~ 423 (546)
+......++..+..|...++....+...+.++.+.+.|..- + +...=...|..|+..+.|
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 35566677777788877777666666778888888877531 0 223345778889999999
Q ss_pred HHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcH-HHHHHHHhcCCHHHHHHHHHHHHH
Q 009036 424 RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMA-EVLMRMERVGSEHVKEKAKRMLEL 502 (546)
Q Consensus 424 r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v-~~L~~ll~~~s~~~k~~A~~lL~~ 502 (546)
...+-+.+....+.+++...+ . ......+|.+|=-.. .|-. ..|-+.+.+++..+|-.|...|+.
T Consensus 157 l~lLe~~~if~~l~~i~~~~~---~--~~l~klil~~LDY~~---------~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ 222 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSS---R--DDLLKLILSSLDYSV---------DGHPRIILSKALTSGSESIRLYATKHLRV 222 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCc---h--HHHHHHHHhhCCCCC---------ccHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 988888999999999998842 1 233333444441111 1222 245566889999999999999988
Q ss_pred hhc
Q 009036 503 MKG 505 (546)
Q Consensus 503 L~~ 505 (546)
+.+
T Consensus 223 llr 225 (226)
T PF14666_consen 223 LLR 225 (226)
T ss_pred Hhc
Confidence 754
No 366
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=52.39 E-value=45 Score=29.37 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=53.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC--chHHHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhcc
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEK--INKMLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLA 338 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~--~nk~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls 338 (546)
.++..|.+-|.++++.++..|+.+|-.+..+. .....+....++..|+.++... .+.++..++.++...+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 34666777788899999999999999888863 4566667778999999988865 3448888887776654
No 367
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.55 E-value=8.4 Score=43.65 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=34.2
Q ss_pred CceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCC
Q 009036 44 GEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGT 88 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~ 88 (546)
..-.|..|.-.+.=|++- .|||.|-+.|.+ .+..-||.|..
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 335799999999999985 999999999997 45668999954
No 368
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=51.21 E-value=3e+02 Score=30.64 Aligned_cols=112 Identities=15% Similarity=0.081 Sum_probs=68.7
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc---CchhHH
Q 009036 310 GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL---VKSNRT 386 (546)
Q Consensus 310 g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~---~~~n~~ 386 (546)
|.+..+++-+.+.+..+|...+.+|..++..-..-......|.+..|..-+-+..+.++..|+.+|..+-. +++|+
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~- 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR- 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH-
Confidence 45666666667788999999999998876432111122235677777777767778899999999988754 33333
Q ss_pred HHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHH
Q 009036 387 KLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVL 428 (546)
Q Consensus 387 ~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~ 428 (546)
.+..|+.++......|---.+|.|+...+..+..++
T Consensus 170 ------~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~Il 205 (885)
T COG5218 170 ------IVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCIL 205 (885)
T ss_pred ------HHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHH
Confidence 234566666653322222234556665554444443
No 369
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.06 E-value=7.4 Score=41.29 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=51.4
Q ss_pred CCCCCceeCccc-ccccCCCeec--CCCccccHHHHHHHHhcC-CCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009036 40 AEPPGEFLCPVS-GSLMADPVVV--SSGHTFERACAHVCKTLG-FTPTLVDGTTPDFSTVIPNLALKSTILNWCH 110 (546)
Q Consensus 40 ~~~p~~~~CpI~-~~~m~dPV~~--~~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~ 110 (546)
...+++..||+| .+.|.|-+++ .|..+||..||.+.+-.. .+-|..|... .-.+.|+..++..+..-..
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~~--~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNVL--ADDLLPPKTLRDTINRILA 286 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhccc--ccccCCchhhHHHHHHHHh
Confidence 357899999999 9999999998 789999999998866443 3345555432 3467788777777766533
No 370
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=50.34 E-value=6 Score=37.96 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=33.7
Q ss_pred CceeCccccc-ccCCC--eec--C-CCccccHHHHHHHHhcCCCCCC--CCCCC
Q 009036 44 GEFLCPVSGS-LMADP--VVV--S-SGHTFERACAHVCKTLGFTPTL--VDGTT 89 (546)
Q Consensus 44 ~~~~CpI~~~-~m~dP--V~~--~-~G~ty~r~~i~~~~~~~~~~cp--~~~~~ 89 (546)
.+-.||||.. .+-.| +++ | |=|..|-+|.-+-|..|..+|| .|++.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 4567999973 33344 222 4 9999999999999999988888 46543
No 371
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=50.04 E-value=4.5e+02 Score=30.19 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=79.7
Q ss_pred CChHHHHHHHHcc--------CCHHHHHHHHHHHHHhhc---CCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhh
Q 009036 268 PRLLLALRSLIIS--------RYTNVQVNAVAALVNLSL---EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFS 336 (546)
Q Consensus 268 ~g~i~~Lv~lL~s--------~~~~v~~~A~~~L~nLs~---~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~ 336 (546)
.|.++.++..|.. +++.-.+.|+..+.++.. .+.-...+++.=+++.++-.+++...-++..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 3889999998831 233444667777766654 23333334444455666667788888889999999988
Q ss_pred cccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 009036 337 LALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKL 391 (546)
Q Consensus 337 Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~ 391 (546)
+..+ .+..-....+.+.....|++.+..++..|+.||.-+-.+.....++-+.
T Consensus 487 ~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sah 539 (970)
T COG5656 487 IEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAH 539 (970)
T ss_pred HHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhh
Confidence 8443 2222223446677777888877888889998888877766555555444
No 372
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=50.03 E-value=1.4e+02 Score=29.82 Aligned_cols=68 Identities=21% Similarity=0.265 Sum_probs=44.6
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH--HHHhcCChHHHHHHHc------------cCCHHHHHHHHHHHh
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM--LIVRSGLVPPIVDVLM------------AGSAEAQEHACGAIF 335 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~--~i~~~g~l~~Lv~lL~------------~~~~~~~~~Aa~~L~ 335 (546)
++|.++.++++.++.++..++.+|..+..+..... .+.+.|..+.+-+.|. ..+..+...|..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 58999999999999999999999998877533322 3445565555444433 123445555555555
Q ss_pred hc
Q 009036 336 SL 337 (546)
Q Consensus 336 ~L 337 (546)
.|
T Consensus 200 ~L 201 (282)
T PF10521_consen 200 SL 201 (282)
T ss_pred HH
Confidence 55
No 373
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=49.75 E-value=2e+02 Score=28.52 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=46.5
Q ss_pred HHHHHhCCcHHHHHHHHccC--------CCCCHHHHHHHHHHHHHHhcCC----------------hhhHHHHHHCCcHH
Q 009036 424 RVAVLDSGGVECLVGMLRKG--------TELSESTQESCVSVLYALSHGG----------------LRFKGLAAAAGMAE 479 (546)
Q Consensus 424 r~~i~~~g~i~~Lv~lL~~~--------~~~s~~~~e~Av~~L~~L~~~~----------------~~~~~~~~~~g~v~ 479 (546)
+.+|.+.+++..++.++... +..+...-+.++..+.|+..-+ ...-..+.+.|+..
T Consensus 102 K~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~ 181 (266)
T PF04821_consen 102 KEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLD 181 (266)
T ss_pred HHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHH
Confidence 44555555556555554221 0012334556666666664410 01222455678888
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhhcCC
Q 009036 480 VLMRMERVG-SEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 480 ~L~~ll~~~-s~~~k~~A~~lL~~L~~~~ 507 (546)
.|+.+.++. .........+++..|-+..
T Consensus 182 lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 182 LLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred HHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 999988876 3445557777777775543
No 374
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=49.64 E-value=6 Score=22.99 Aligned_cols=14 Identities=21% Similarity=0.750 Sum_probs=10.9
Q ss_pred eeCcccccccCCCe
Q 009036 46 FLCPVSGSLMADPV 59 (546)
Q Consensus 46 ~~CpI~~~~m~dPV 59 (546)
|.||+|...|.++-
T Consensus 1 y~C~~C~~~f~~~~ 14 (23)
T PF00096_consen 1 YKCPICGKSFSSKS 14 (23)
T ss_dssp EEETTTTEEESSHH
T ss_pred CCCCCCCCccCCHH
Confidence 67888888887763
No 375
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=49.28 E-value=1e+02 Score=26.03 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=48.4
Q ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-CChhhHHHHHHCCcHHHHHHHHh------cCCHHHHHHHHHHHHHhh
Q 009036 432 GVECLVGMLRKGTELSESTQESCVSVLYALSH-GGLRFKGLAAAAGMAEVLMRMER------VGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~-~~~~~~~~~~~~g~v~~L~~ll~------~~s~~~k~~A~~lL~~L~ 504 (546)
++..|.+.|.+ .++..+..|+.+|-.+.. +++.+...+.....+..++.+.. ..+..+|+++..++...+
T Consensus 38 ~~~~l~kRl~~---~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINN---KNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 45666666766 468899999999999887 45567776666554444444211 227889999999987654
No 376
>PLN02436 cellulose synthase A
Probab=48.40 E-value=12 Score=43.87 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=36.1
Q ss_pred eeCcccccc-----cCCCeec--CCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 46 FLCPVSGSL-----MADPVVV--SSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 46 ~~CpI~~~~-----m~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
-.|.||++= .-||-+. .||.-.||.|.+-=.++|+..||.|+....
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 379999974 4567665 688899999996656678899999987654
No 377
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.25 E-value=2.2e+02 Score=29.01 Aligned_cols=140 Identities=15% Similarity=0.154 Sum_probs=77.6
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhhcCch-hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHh
Q 009036 353 LPPLLHLLKSDSERTQHDSALALYHLSLVKS-NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLD 429 (546)
Q Consensus 353 l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~-n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~ 429 (546)
+...+..|.+++=..+..++..|..|+.++. ....+.. .+|..+++-+.+.. +...|+.++.-|...-... +.+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--i~~ 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--IDQ 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3444555666666666777777777776442 2111111 24555666666543 6666666666665432211 111
Q ss_pred CCcHHHH-HHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 430 SGGVECL-VGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 430 ~g~i~~L-v~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
....+ ..+|.....++.-+++.|-.+|..+...-... -+++.|+-.+++.+++++.++....-.+-
T Consensus 167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 22233 33344433234557888888888777542111 13566666788888888888876655443
No 378
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=47.51 E-value=5.4 Score=38.58 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=28.5
Q ss_pred CCCee-cCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036 56 ADPVV-VSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN 98 (546)
Q Consensus 56 ~dPV~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 98 (546)
.||.- +.|+|.||-.|.... ...-||.|++++.-..+.+|
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~---~~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKAS---SPDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred CCceeeeechhhhhhhhcccC---Cccccccccceeeeeecccc
Confidence 55654 599999999996432 12279999998766666666
No 379
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=47.50 E-value=7.5 Score=27.71 Aligned_cols=14 Identities=36% Similarity=1.106 Sum_probs=9.3
Q ss_pred CCCCCceeCccccc
Q 009036 40 AEPPGEFLCPVSGS 53 (546)
Q Consensus 40 ~~~p~~~~CpI~~~ 53 (546)
.++|+++.||+|..
T Consensus 29 ~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 29 EDLPDDWVCPVCGA 42 (47)
T ss_dssp GGS-TT-B-TTTSS
T ss_pred HHCCCCCcCcCCCC
Confidence 47899999999974
No 380
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=47.48 E-value=98 Score=34.90 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=83.1
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHH-ccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLI-ISRYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
..++.|...+++.+..+|..++..+-..+..-+ ...+..-++|.|..+. .+.+..++.+++.++..+. +.
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q~ 459 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------QR 459 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------HH
Confidence 334556666788888888888888887776433 3444555677777764 4568889999999988877 22
Q ss_pred HHhcCChHHHHHHH---ccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC
Q 009036 306 IVRSGLVPPIVDVL---MAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD 363 (546)
Q Consensus 306 i~~~g~l~~Lv~lL---~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~ 363 (546)
+-...+++.+.-++ +..++.+......+...+.....+...+....++|.++.+...+
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 22233444444444 45578888777777777766554433333455777777766554
No 381
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=47.38 E-value=2.9e+02 Score=27.24 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=46.3
Q ss_pred hcCcHHHHHHHHhCch----------HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 009036 390 KLGSVNALLGMVNSGH----------MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLY 459 (546)
Q Consensus 390 ~~Gav~~Lv~lL~~~~----------~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~ 459 (546)
+.-+.+.|+++++.++ +.+..-.+|..++. |-+..|.+++.+.. .+.-++-.|+.+|.
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~-----------G~~~~L~~li~~~~-~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD-----------GDIEPLKELIEDPD-ADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC-----------CCHHHHHHHHhCCc-HHHHHHHHHHHHHH
Confidence 3357888999986432 44555555555543 56677777777743 34668888888888
Q ss_pred HHhcCChhhHHHH
Q 009036 460 ALSHGGLRFKGLA 472 (546)
Q Consensus 460 ~L~~~~~~~~~~~ 472 (546)
.+...++..+..+
T Consensus 139 ~l~~~~~~~Re~v 151 (249)
T PF06685_consen 139 FLVHEGPISREEV 151 (249)
T ss_pred HHHHcCCCCHHHH
Confidence 8887655545443
No 382
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=47.08 E-value=2.5e+02 Score=26.31 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=62.0
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHhhcccccchhh------------------HHhh--cCChHHHHHhhccC-CHHHHHH
Q 009036 312 VPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKT------------------AIGV--LGALPPLLHLLKSD-SERTQHD 370 (546)
Q Consensus 312 l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~------------------~i~~--~g~l~~Lv~lL~~~-~~~~~~~ 370 (546)
...+.-++.+.++.+|..|+.+|..|-.....-- .++. ...-..|+..|..+ +......
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 4445556778899999999999988754431100 0000 11223555666554 6667778
Q ss_pred HHHHHHHhhcCch-hHHHHHhcCcHHHHHH----HHhC--chHHHHHHHHHHHhhCC
Q 009036 371 SALALYHLSLVKS-NRTKLVKLGSVNALLG----MVNS--GHMTGRVLLILGNLASC 420 (546)
Q Consensus 371 A~~aL~~Ls~~~~-n~~~iv~~Gav~~Lv~----lL~~--~~~~e~al~~L~nLa~~ 420 (546)
.+++|..|...-. +|- ..|.++.++. ++.+ .+++..++.++..|...
T Consensus 122 ~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 122 LLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 8888888876322 221 2244444443 4433 34788888888877654
No 383
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=46.71 E-value=66 Score=36.16 Aligned_cols=110 Identities=13% Similarity=0.007 Sum_probs=72.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHh------cCChHHHHHHHccCCHHHHHHHHHHHhhcccccchh
Q 009036 271 LLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVR------SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNK 344 (546)
Q Consensus 271 i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~------~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k 344 (546)
...++.+|++.+-..+-..+.+..|+..+......+++ ...+..|++-|.+..+-+|..|..++..+...+..
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk- 379 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK- 379 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc-
Confidence 44566777777777777777777787664322223332 13566667777788999999999988877544310
Q ss_pred hHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036 345 TAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 345 ~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 381 (546)
..=.....+...++-|++.+.-++++|+..+..|...
T Consensus 380 ~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 380 TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 0001123455666778888888999999888877653
No 384
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=46.28 E-value=14 Score=43.51 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=35.7
Q ss_pred eeCcccccc-----cCCCeec--CCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 46 FLCPVSGSL-----MADPVVV--SSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 46 ~~CpI~~~~-----m~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
=.|.||++= .-||-+. .||--.||.|.|-=.++|+..||.|+....
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 379999974 4567664 788899999996555678999999987543
No 385
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=46.06 E-value=26 Score=24.37 Aligned_cols=39 Identities=5% Similarity=0.018 Sum_probs=20.9
Q ss_pred CcccccccCCCeec---CCCccccHHHHHHHHhcCCC-CCCCC
Q 009036 48 CPVSGSLMADPVVV---SSGHTFERACAHVCKTLGFT-PTLVD 86 (546)
Q Consensus 48 CpI~~~~m~dPV~~---~~G~ty~r~~i~~~~~~~~~-~cp~~ 86 (546)
|-+|.++..-=+.= .|+-.+=..|+.++|..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 45666665555553 38888999999999886555 48875
No 386
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.86 E-value=73 Score=36.07 Aligned_cols=70 Identities=19% Similarity=0.121 Sum_probs=34.0
Q ss_pred ChHHHHHHH-HccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhH
Q 009036 269 RLLLALRSL-IISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTA 346 (546)
Q Consensus 269 g~i~~Lv~l-L~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~ 346 (546)
++|..|+.. ....+.+++..|+.+|.-++..+. .-++..+.+|... ++.+|--|+.+|.-.+....+++.
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA 625 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA 625 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH
Confidence 344444444 334456666666666654443221 1244455555433 566665555555554444433333
No 387
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=45.56 E-value=1.9e+02 Score=27.12 Aligned_cols=137 Identities=18% Similarity=0.096 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcc-Ch----hhhHHhhcC------ChHHHHH-HHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhc-
Q 009036 243 EVEEALISLRKLTRS-RE----ETRVSLCTP------RLLLALR-SLIISRYTNVQVNAVAALVNLSLEKINKMLIVRS- 309 (546)
Q Consensus 243 ~~~~Al~~L~~La~~-~~----~~r~~l~~~------g~i~~Lv-~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~- 309 (546)
+|..|+..|..+++. +. .....+.-. ..-+.|+ -++.++++.++..|+.+|..|......--..+++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 466778888887776 22 122222211 1333344 4566789999999999998876553222222221
Q ss_pred ----CC---------------hHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHH----HhhccCCH
Q 009036 310 ----GL---------------VPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLL----HLLKSDSE 365 (546)
Q Consensus 310 ----g~---------------l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv----~lL~~~~~ 365 (546)
+. -..|+..|+.. +..+......+|..|...-.+.. ...|.++.++ .++.+.+.
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r--L~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR--LPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh--cCHhHHHHHHHHHHHHHhcCCC
Confidence 11 23344445544 56677777778877766543311 1234444444 55556778
Q ss_pred HHHHHHHHHHHHhhcC
Q 009036 366 RTQHDSALALYHLSLV 381 (546)
Q Consensus 366 ~~~~~A~~aL~~Ls~~ 381 (546)
.++..++.++..|...
T Consensus 160 ~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 160 NVRVAALSCLGALLSV 175 (182)
T ss_pred cHHHHHHHHHHHHHcC
Confidence 8888888888777653
No 388
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=45.36 E-value=1.2e+02 Score=26.94 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=58.5
Q ss_pred chhHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHH-HHHHHcc---CCHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKS-PQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLA-LRSLIIS---RYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s-~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~-Lv~lL~s---~~~~v~~~A~~~L~nLs~ 298 (546)
..++..|.++|.+ .++.++..|+..|-.+.+.+. .....+...+++.- |+.++.. .+..++..++..+...+.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 4678889999974 589999999999999998864 56677778899986 8999863 345888888888887764
No 389
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=45.01 E-value=3.3e+02 Score=27.11 Aligned_cols=173 Identities=18% Similarity=0.199 Sum_probs=98.2
Q ss_pred CChHHHHHHHccC--CHHHHHHHHHHHhhcccccc--------hhhHHhhcCChHHHHHhhccCC----HHHHHHHHHHH
Q 009036 310 GLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQ--------NKTAIGVLGALPPLLHLLKSDS----ERTQHDSALAL 375 (546)
Q Consensus 310 g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~--------~k~~i~~~g~l~~Lv~lL~~~~----~~~~~~A~~aL 375 (546)
|..+.|..++-.| +....+.+..+|..|....+ .+-.+.-.+.+|.++.-+.+++ .......+..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 6677777777666 55566667777776654431 2333333567777777777766 13446677788
Q ss_pred HHhhcCchhHHHHHhcCcHHHHHHHHhCch------HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHH
Q 009036 376 YHLSLVKSNRTKLVKLGSVNALLGMVNSGH------MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSES 449 (546)
Q Consensus 376 ~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~------~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~ 449 (546)
..+|... ....+..++.....+. ....++..|..-.- ++ .+...+..|+.+|.++ ...
T Consensus 140 a~~a~~~-------~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~---~~w 203 (262)
T PF14225_consen 140 AQVAEAQ-------GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENG---PPW 203 (262)
T ss_pred HHHHHhC-------CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCC---cHH
Confidence 8887421 1123333344333322 33334444332110 11 1234667889999884 478
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009036 450 TQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELM 503 (546)
Q Consensus 450 ~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L 503 (546)
.+...+.+|..+-..-+-.+. ..+..+..|.++++++-- ..|.++|...
T Consensus 204 ~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~~---~eAL~VLd~~ 252 (262)
T PF14225_consen 204 LRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDLW---MEALEVLDEI 252 (262)
T ss_pred HHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCccH---HHHHHHHHHH
Confidence 899999999888764221122 334478899999877632 2355555443
No 390
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=44.54 E-value=55 Score=29.00 Aligned_cols=71 Identities=21% Similarity=0.237 Sum_probs=53.0
Q ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHCCcHHHHHHHHhcC-CHH---HHHHHHHHHHHhhc
Q 009036 432 GVECLVGMLRKGTELSESTQESCVSVLYALSHGG-LRFKGLAAAAGMAEVLMRMERVG-SEH---VKEKAKRMLELMKG 505 (546)
Q Consensus 432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~-~~~~~~~~~~g~v~~L~~ll~~~-s~~---~k~~A~~lL~~L~~ 505 (546)
++..|.+.|.. .++.++..|+.+|-.+..+. ..+...+.....+..|..++.+. ... +|+++..+|.....
T Consensus 43 a~~~l~krl~~---~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKH---GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTT---SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 55677778887 46899999999998887743 46666665556778888876654 333 89999999987764
No 391
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=44.35 E-value=1.6e+02 Score=34.16 Aligned_cols=180 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHhccChhhhHHhhcCChHHHHHHHHc--------cCCHHHHHHHHHHHHHhhcCCchHHHHHhc-----
Q 009036 244 VEEALISLR-KLTRSREETRVSLCTPRLLLALRSLII--------SRYTNVQVNAVAALVNLSLEKINKMLIVRS----- 309 (546)
Q Consensus 244 ~~~Al~~L~-~La~~~~~~r~~l~~~g~i~~Lv~lL~--------s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~----- 309 (546)
|+++...+. .+++..=..-..+.+.+++..++.+.. ++..+....|+.+|..+..-+..+..++..
T Consensus 575 q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~ 654 (1516)
T KOG1832|consen 575 QLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNN 654 (1516)
T ss_pred HHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcc
Q ss_pred ---CChHHHHHHHccC----CHHHHHHHHHHHhhccccc-ch-hhHHhhcCC--hHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036 310 ---GLVPPIVDVLMAG----SAEAQEHACGAIFSLALDD-QN-KTAIGVLGA--LPPLLHLLKSDSERTQHDSALALYHL 378 (546)
Q Consensus 310 ---g~l~~Lv~lL~~~----~~~~~~~Aa~~L~~Ls~~~-~~-k~~i~~~g~--l~~Lv~lL~~~~~~~~~~A~~aL~~L 378 (546)
.++..|+..-.-. +++++..|+.+|-++...+ ++ +..|+.-|- =..=..+=+........+.+.-+|+-
T Consensus 655 ~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~ 734 (1516)
T KOG1832|consen 655 RAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEA 734 (1516)
T ss_pred cccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHH
Q ss_pred hcCchhHHHHHhc-CcHHHHHHHHhCch-------HHHHHHHHHHHhhCCcccHHHHHhCCcH
Q 009036 379 SLVKSNRTKLVKL-GSVNALLGMVNSGH-------MTGRVLLILGNLASCSDGRVAVLDSGGV 433 (546)
Q Consensus 379 s~~~~n~~~iv~~-Gav~~Lv~lL~~~~-------~~e~al~~L~nLa~~~e~r~~i~~~g~i 433 (546)
|+. .+|..|+++|.-.. ++..|+.+|.-|+..++-|+-+..-..+
T Consensus 735 ----------Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 735 ----------VRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLV 787 (1516)
T ss_pred ----------HhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccc
No 392
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=44.12 E-value=29 Score=27.41 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=21.9
Q ss_pred eeCccccccc-----CCCeec--CCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 46 FLCPVSGSLM-----ADPVVV--SSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 46 ~~CpI~~~~m-----~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
-.|.||++=. -||.+. .|+--.||.|.+-=.+.|+..||.|+.+..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 4689998642 355554 678888999998777789999999976543
No 393
>PLN03205 ATR interacting protein; Provisional
Probab=44.06 E-value=2.2e+02 Score=30.03 Aligned_cols=102 Identities=11% Similarity=0.053 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHhhc--C-CchHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccc----------c-----
Q 009036 281 RYTNVQVNAVAALVNLSL--E-KINKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALD----------D----- 341 (546)
Q Consensus 281 ~~~~v~~~A~~~L~nLs~--~-~~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~----------~----- 341 (546)
....++-.|+.++-.+.. + ...++++....+++.+..+|+.. ...++..|..+|+.|..= .
T Consensus 384 TEE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ 463 (652)
T PLN03205 384 TEEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNS 463 (652)
T ss_pred chhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccc
Confidence 344556667666544333 3 34577777777889999999865 677888888887755110 0
Q ss_pred ---c-hhhHH-hh----cCChHHHHHhhcc-----CCHHHHHHHHHHHHHhhcCc
Q 009036 342 ---Q-NKTAI-GV----LGALPPLLHLLKS-----DSERTQHDSALALYHLSLVK 382 (546)
Q Consensus 342 ---~-~k~~i-~~----~g~l~~Lv~lL~~-----~~~~~~~~A~~aL~~Ls~~~ 382 (546)
+ ++... .. ...++.|.+.+.. .+.++++.++..|..+++..
T Consensus 464 ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSG 518 (652)
T PLN03205 464 SDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSG 518 (652)
T ss_pred cccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcC
Confidence 1 11101 01 1233444444432 36788899999888887754
No 394
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=43.20 E-value=3.4e+02 Score=26.79 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=25.5
Q ss_pred cCcHHHHHHHHhCch----HHHHHHHHHHHhhC-CcccHHHHH
Q 009036 391 LGSVNALLGMVNSGH----MTGRVLLILGNLAS-CSDGRVAVL 428 (546)
Q Consensus 391 ~Gav~~Lv~lL~~~~----~~e~al~~L~nLa~-~~e~r~~i~ 428 (546)
.|-+..|-+++.++. ++..|+.+|..++. .+..|+.++
T Consensus 110 ~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 110 DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVI 152 (249)
T ss_pred CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 356777777777654 67778888877774 445566665
No 395
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=42.60 E-value=4.2e+02 Score=27.75 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=75.2
Q ss_pred hHHHHHHhcCCCCHH-HHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc------cCCHHHHHHHHHHHHHhhcCC
Q 009036 228 QEDYFVQKLKSPQVH-EVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII------SRYTNVQVNAVAALVNLSLEK 300 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~-~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~------s~~~~v~~~A~~~L~nLs~~~ 300 (546)
-.+.+-+.+...+.. -+..|...|+.+++.-...-..+ +...+-.+|. +.+...++.|+..+..|+...
T Consensus 211 P~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~ 286 (370)
T PF08506_consen 211 PEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKG 286 (370)
T ss_dssp HHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS
T ss_pred HHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhh
Confidence 345555666544444 35667777778886422211111 1222333333 346777888888888887653
Q ss_pred ch-------------HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHH
Q 009036 301 IN-------------KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERT 367 (546)
Q Consensus 301 ~n-------------k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~ 367 (546)
.. -..+...-++|-|. -=.+..+-++..|+..+...-.. -.+..+ .+.++.|+..|.+++.-+
T Consensus 287 ~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~-l~~~~l--~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 287 STTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ-LPKEQL--LQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp --BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG-S-HHHH--HHHHHHHHHHTTSS-HHH
T ss_pred ccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh-CCHHHH--HHHHHHHHHHhCCCCcch
Confidence 22 12222223333333 10123566787888777766433 223332 358999999999998888
Q ss_pred HHHHHHHH
Q 009036 368 QHDSALAL 375 (546)
Q Consensus 368 ~~~A~~aL 375 (546)
...|+.++
T Consensus 363 ~tyAA~~i 370 (370)
T PF08506_consen 363 HTYAAIAI 370 (370)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhC
Confidence 88888764
No 396
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=42.13 E-value=18 Score=31.89 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=26.4
Q ss_pred ceeCcccccccCC--Cee-cCCCc------cccHHHHHHHHh
Q 009036 45 EFLCPVSGSLMAD--PVV-VSSGH------TFERACAHVCKT 77 (546)
Q Consensus 45 ~~~CpI~~~~m~d--PV~-~~~G~------ty~r~~i~~~~~ 77 (546)
...|.||.+-..+ =|+ +++|- -||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 5679999998887 555 57774 589999999953
No 397
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=42.04 E-value=2.5e+02 Score=30.51 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=69.4
Q ss_pred CcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHH----HHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc---C
Q 009036 392 GSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVA----VLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH---G 464 (546)
Q Consensus 392 Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~----i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~---~ 464 (546)
+.|..+++.+..+.+.+--++++. +..++++.. +.+.+.|+.|+.+|... .+...+.+|..+|..+.. .
T Consensus 21 ~~v~~llkHI~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~--~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 21 NFVDNLLKHIDTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPS--YSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHhhc
Confidence 667777777766655555555554 232334333 34589999999999854 457889999988877743 1
Q ss_pred ----------ChhhHHHHHHCCcHHHHHHHHh--cCCHHHHHHHHHHHHHhhcC
Q 009036 465 ----------GLRFKGLAAAAGMAEVLMRMER--VGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 465 ----------~~~~~~~~~~~g~v~~L~~ll~--~~s~~~k~~A~~lL~~L~~~ 506 (546)
.......+.....+..|+..+- .++..+.....-++..+++.
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 1233344556667888888755 44455555555566666554
No 398
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=41.83 E-value=3.9e+02 Score=27.17 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=77.1
Q ss_pred hHHhhcCChHHHHHhhcc--------C-------------C--HHHHHHHHHHHHHhhcCchhHHHH-------------
Q 009036 345 TAIGVLGALPPLLHLLKS--------D-------------S--ERTQHDSALALYHLSLVKSNRTKL------------- 388 (546)
Q Consensus 345 ~~i~~~g~l~~Lv~lL~~--------~-------------~--~~~~~~A~~aL~~Ls~~~~n~~~i------------- 388 (546)
..+.+.|.++.|-+++.. + + ...|..-++++.++|....++..+
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 445667777777776653 0 1 136677788888888744332211
Q ss_pred ---------HhcCcHHHHHHHHhCch----HHHHHHHHHHHhhCCc---ccHHHHHhCCcHHHHHHHHccCCCCCHHHHH
Q 009036 389 ---------VKLGSVNALLGMVNSGH----MTGRVLLILGNLASCS---DGRVAVLDSGGVECLVGMLRKGTELSESTQE 452 (546)
Q Consensus 389 ---------v~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa~~~---e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e 452 (546)
.+.|.+..+++.+.... .+---..++....+.+ .-+..+.+.|.++.++..+.++...+....+
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 12377777887776532 2222334444444433 3444566899999999988775444567889
Q ss_pred HHHHHHHHHhcCCh
Q 009036 453 SCVSVLYALSHGGL 466 (546)
Q Consensus 453 ~Av~~L~~L~~~~~ 466 (546)
.+...|..|.+.+.
T Consensus 163 ~~FDLLGELiK~n~ 176 (303)
T PF12463_consen 163 SNFDLLGELIKFNR 176 (303)
T ss_pred HHHHHHHHHHCCCH
Confidence 99999999998764
No 399
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.65 E-value=25 Score=37.91 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=30.6
Q ss_pred CCceeCcccccccCC-CeecCCCccccHHHHHHHHhc
Q 009036 43 PGEFLCPVSGSLMAD-PVVVSSGHTFERACAHVCKTL 78 (546)
Q Consensus 43 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~~~~~ 78 (546)
..+..|.||.+-..+ .+.+.|||-||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 467889999998885 667799999999999888753
No 400
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=41.41 E-value=1.4e+02 Score=30.92 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=58.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC-------CHHHHHHHHHHHHHhhcCCc
Q 009036 229 EDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR-------YTNVQVNAVAALVNLSLEKI 301 (546)
Q Consensus 229 i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~-------~~~v~~~A~~~L~nLs~~~~ 301 (546)
+..+.+.+.+.+...+..|+..|+.-..- ..++|.++.++... +.......+..+..|..++.
T Consensus 180 f~~It~a~~~~~~~~r~~aL~sL~tD~gl----------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~ 249 (343)
T cd08050 180 FEEITEALVGSNEEKRREALQSLRTDPGL----------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN 249 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhccCCCc----------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC
Confidence 34556666666666677776665432211 13577777776532 34445555555555555543
Q ss_pred hHHHHHhcCChHHHHHHHcc----------CCHHHHHHHHHHHhhcccc
Q 009036 302 NKMLIVRSGLVPPIVDVLMA----------GSAEAQEHACGAIFSLALD 340 (546)
Q Consensus 302 nk~~i~~~g~l~~Lv~lL~~----------~~~~~~~~Aa~~L~~Ls~~ 340 (546)
-.....=...++.++..+-. ....+|..|+.+|..++..
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~ 298 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRK 298 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 32222222367777765521 2358999999999988753
No 401
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=41.06 E-value=1.5e+02 Score=29.70 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=45.7
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHhhcccccchhh--HHhhcCChHHHH----Hhhc--------cCCHHHHHHHHHHHH
Q 009036 311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKT--AIGVLGALPPLL----HLLK--------SDSERTQHDSALALY 376 (546)
Q Consensus 311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~--~i~~~g~l~~Lv----~lL~--------~~~~~~~~~A~~aL~ 376 (546)
++|.++.++.+.++++|..++.+|..+...-.... .+...|..+.+- ..|. .++..+...|.-+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999998866433222 234455444333 3333 234556666667777
Q ss_pred Hhhc
Q 009036 377 HLSL 380 (546)
Q Consensus 377 ~Ls~ 380 (546)
.|+.
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7643
No 402
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=40.77 E-value=1.1e+02 Score=31.52 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhCCcccHHHHHhCC--cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009036 406 MTGRVLLILGNLASCSDGRVAVLDSG--GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAA 473 (546)
Q Consensus 406 ~~e~al~~L~nLa~~~e~r~~i~~~g--~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~ 473 (546)
++-.|+.+|..+......-..+...+ .+..|++++.........++..|+.+|..++........++.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 35557777777777777778888765 999999999887656788999999999999986555555444
No 403
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=40.74 E-value=1.3e+02 Score=33.87 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=69.1
Q ss_pred HHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhC--CcHHHHHHHHccC-CCCCHHHHHHHHHHHHHHhcCCh--
Q 009036 394 VNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDS--GGVECLVGMLRKG-TELSESTQESCVSVLYALSHGGL-- 466 (546)
Q Consensus 394 v~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~--g~i~~Lv~lL~~~-~~~s~~~~e~Av~~L~~L~~~~~-- 466 (546)
...++++|.+.+ ++...+.+.+|+...-....+++++ .-+..|+.+|... .+.++-.+..|+.++..+|.-+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 455777777765 5555667777776533222344432 2344555544321 11468899999999999987432
Q ss_pred -hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHh-hcCCcc
Q 009036 467 -RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELM-KGRAEE 509 (546)
Q Consensus 467 -~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L-~~~~~~ 509 (546)
+.+.. ++....+-+++-+..+|++|..++..| .+++..
T Consensus 381 ~~~r~e-----v~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~ 420 (1128)
T COG5098 381 VGRRHE-----VIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFA 420 (1128)
T ss_pred cchHHH-----HHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChh
Confidence 22332 345666778899999999999998655 344433
No 404
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=40.62 E-value=6.2e+02 Score=29.13 Aligned_cols=135 Identities=11% Similarity=0.110 Sum_probs=77.7
Q ss_pred chhHHHHHHhc---C--CC---CHHHHHHHHHHHHHHhc--cChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHH
Q 009036 226 NEQEDYFVQKL---K--SP---QVHEVEEALISLRKLTR--SREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVN 295 (546)
Q Consensus 226 ~~~i~~lv~~L---~--s~---~~~~~~~Al~~L~~La~--~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~n 295 (546)
.+.+++++.-| + .+ +....+.|++.+.++.. ..+.--+.+.+.=+++.++..++++.--++..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 45667777766 1 11 22233445555554433 111122223333456666677788888888999999988
Q ss_pred hhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--cCChHHHHHhhcc
Q 009036 296 LSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--LGALPPLLHLLKS 362 (546)
Q Consensus 296 Ls~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~l~~Lv~lL~~ 362 (546)
+..+-.....+ ..+.+.....|++.+..++..|+.+|.-+..++.....+.+ .+.++.|+.+-..
T Consensus 487 ~eeDfkd~~il--l~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~ 553 (970)
T COG5656 487 IEEDFKDNGIL--LEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT 553 (970)
T ss_pred HHHhcccchHH--HHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc
Confidence 85542222111 23455566677777788888999998887776654444433 4555555555443
No 405
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=40.56 E-value=1.2e+02 Score=26.44 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=42.3
Q ss_pred ChHHHHHhhccCC----HHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHH
Q 009036 352 ALPPLLHLLKSDS----ERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLIL 414 (546)
Q Consensus 352 ~l~~Lv~lL~~~~----~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L 414 (546)
.+..+.+.|.... .+....++.++.+...+- .-..+.....++.+.++|..+++++.|+.+|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~-~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISWI-PIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC-CHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3444444444322 777888888888876643 3445566679999999998888888887765
No 406
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=40.20 E-value=3.8e+02 Score=26.56 Aligned_cols=144 Identities=18% Similarity=0.086 Sum_probs=69.8
Q ss_pred hHHhhcCChHH-HHHHHHcc--CCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcc
Q 009036 262 RVSLCTPRLLL-ALRSLIIS--RYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLA 338 (546)
Q Consensus 262 r~~l~~~g~i~-~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls 338 (546)
++++.+.+++. -|+.+|.+ .+..+-..++..|.+|...-+.- .+. . ..+...+.+.......+
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~---~~~--~--------~~~~~~~~~~~~l~~~l- 98 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELL---VES--Q--------PKDKNQRRNIPELLKYL- 98 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHh---ccC--C--------CCChHHHHHHHHHHHHH-
Confidence 44444444444 24444432 36788888999999887421110 000 0 00222222222222222
Q ss_pred cccchhhHHhhcCChHHHHHhhcc-----------CCHHHHHHHHHHHHHhhcCchhHHHHH----hcCcHHHHHHHHhC
Q 009036 339 LDDQNKTAIGVLGALPPLLHLLKS-----------DSERTQHDSALALYHLSLVKSNRTKLV----KLGSVNALLGMVNS 403 (546)
Q Consensus 339 ~~~~~k~~i~~~g~l~~Lv~lL~~-----------~~~~~~~~A~~aL~~Ls~~~~n~~~iv----~~Gav~~Lv~lL~~ 403 (546)
..+|..+...+++..++.++.. .+....+..+..+.|+..-++....-. ..-.-..++..|.
T Consensus 99 --~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~- 175 (266)
T PF04821_consen 99 --QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALF- 175 (266)
T ss_pred --HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHH-
Confidence 2456666666666766665532 133466778888999876433211111 1112223333332
Q ss_pred chHHHHHHHHHHHhhCCcccHH
Q 009036 404 GHMTGRVLLILGNLASCSDGRV 425 (546)
Q Consensus 404 ~~~~e~al~~L~nLa~~~e~r~ 425 (546)
....+.+|..|+.++.+..
T Consensus 176 ---~~~v~~lLL~l~s~~~~~~ 194 (266)
T PF04821_consen 176 ---ESGVLDLLLTLASSPQESD 194 (266)
T ss_pred ---HcCHHHHHHHHHhCccccc
Confidence 2335667777777765443
No 407
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=40.04 E-value=19 Score=42.31 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=36.1
Q ss_pred eeCcccccc-----cCCCeec--CCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 46 FLCPVSGSL-----MADPVVV--SSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 46 ~~CpI~~~~-----m~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
-.|.||++= .-||-+. .||--.||.|.+-=.+.|+..||.|+....
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 469999874 5567765 788899999996555678899999987654
No 408
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=39.59 E-value=12 Score=21.48 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=7.7
Q ss_pred eeCcccccccCCC
Q 009036 46 FLCPVSGSLMADP 58 (546)
Q Consensus 46 ~~CpI~~~~m~dP 58 (546)
|.||+|...|.++
T Consensus 1 ~~C~~C~~~~~~~ 13 (24)
T PF13894_consen 1 FQCPICGKSFRSK 13 (24)
T ss_dssp EE-SSTS-EESSH
T ss_pred CCCcCCCCcCCcH
Confidence 5788887777654
No 409
>PLN03205 ATR interacting protein; Provisional
Probab=39.02 E-value=60 Score=33.99 Aligned_cols=108 Identities=9% Similarity=0.102 Sum_probs=69.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHH---hcCChHHHHHHHc-----cCCHHHHHHHHHHHhhcccc
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIV---RSGLVPPIVDVLM-----AGSAEAQEHACGAIFSLALD 340 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~---~~g~l~~Lv~lL~-----~~~~~~~~~Aa~~L~~Ls~~ 340 (546)
++++|+.+..-++..+...++..|..+..+ -.++..+- +...+ .|.+++. +....++..|..++.-+...
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWv-sLfElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWH-SLFELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHH-HHHHHHHHHHhccchhheeeehhhhhHHhhhc
Confidence 577788888888888888888887765544 22232221 11222 3333332 23456777888877765544
Q ss_pred cc---hhhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHh
Q 009036 341 DQ---NKTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHL 378 (546)
Q Consensus 341 ~~---~k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~L 378 (546)
.+ .++.++...+++.+-++|+.+ -..++++|+..|+-|
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLL 444 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLL 444 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 32 377777778899999999875 567888888776644
No 410
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=38.64 E-value=23 Score=29.57 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=20.6
Q ss_pred CCCccccHHHHHHHHhcCCCCCCCCCC
Q 009036 62 SSGHTFERACAHVCKTLGFTPTLVDGT 88 (546)
Q Consensus 62 ~~G~ty~r~~i~~~~~~~~~~cp~~~~ 88 (546)
.|.|.|---||.+|++.. .-||.+.+
T Consensus 80 ~CNHaFH~hCisrWlktr-~vCPLdn~ 105 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR-NVCPLDNK 105 (114)
T ss_pred ecchHHHHHHHHHHHhhc-CcCCCcCc
Confidence 688999999999999843 35776654
No 411
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.33 E-value=5.8 Score=31.18 Aligned_cols=11 Identities=36% Similarity=1.029 Sum_probs=8.3
Q ss_pred eeCcccccccC
Q 009036 46 FLCPVSGSLMA 56 (546)
Q Consensus 46 ~~CpI~~~~m~ 56 (546)
+.||||.--|.
T Consensus 2 llCP~C~v~l~ 12 (88)
T COG3809 2 LLCPICGVELV 12 (88)
T ss_pred cccCcCCceee
Confidence 47999987654
No 412
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=37.74 E-value=3.4e+02 Score=25.25 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=80.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG 348 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~ 348 (546)
.++.++++..+.+..++..|+.+|.-+..- --|= ...+|.|+.+..+.++.++..|...+..+..-.+.-..-.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 356677777888999999998888754321 0110 0258899999999999999999999998855332210000
Q ss_pred hcCChHHHHHhhc---cCCHH-H---HHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCc----------hHHHHH
Q 009036 349 VLGALPPLLHLLK---SDSER-T---QHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSG----------HMTGRV 410 (546)
Q Consensus 349 ~~g~l~~Lv~lL~---~~~~~-~---~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~----------~~~e~a 410 (546)
-..++..-..+-+ .+... . ...-+..|+.+.. ...+|.+++. .|++.+... .-....
T Consensus 84 ~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~~~~~~~~~~~~~~~l~~~ 158 (187)
T PF12830_consen 84 YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFDFDLTKLSSESSPSDLDFL 158 (187)
T ss_pred HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHHhhccccccccchhHHHHH
Confidence 0123333332222 11111 1 3445556777666 4456666544 455555431 134446
Q ss_pred HHHHHHhhCC
Q 009036 411 LLILGNLASC 420 (546)
Q Consensus 411 l~~L~nLa~~ 420 (546)
+-+..||+.-
T Consensus 159 ~Fla~nLA~l 168 (187)
T PF12830_consen 159 LFLAENLATL 168 (187)
T ss_pred HHHHHHHhcC
Confidence 6666666653
No 413
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=37.59 E-value=15 Score=37.83 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=34.6
Q ss_pred CceeCccccccc--CCCe--ecCCCccccHHHHHHHHhc-CCCCCCCCC
Q 009036 44 GEFLCPVSGSLM--ADPV--VVSSGHTFERACAHVCKTL-GFTPTLVDG 87 (546)
Q Consensus 44 ~~~~CpI~~~~m--~dPV--~~~~G~ty~r~~i~~~~~~-~~~~cp~~~ 87 (546)
-++.|-.|++.+ +|-- -+||.|.|--.|+..++.. +..+||.|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 356799999985 3332 3799999999999998865 456999997
No 414
>PF14353 CpXC: CpXC protein
Probab=37.49 E-value=27 Score=30.49 Aligned_cols=46 Identities=15% Similarity=0.000 Sum_probs=34.4
Q ss_pred ceeCcccccccCCCeecCCCccccHHHHHHHHhcC--CCCCCCCCCCC
Q 009036 45 EFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLG--FTPTLVDGTTP 90 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~ 90 (546)
+..||-|+..|.=.|-..---+-+..-.++-++.. ...||.|+...
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 35799999998888777666667777777777543 33899998764
No 415
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=36.80 E-value=99 Score=31.81 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcccccchhhHHhh--cCChHHHHHhhccC---CHHHHHHHHHHHHHhhcCchhHHHH
Q 009036 325 EAQEHACGAIFSLALDDQNKTAIGV--LGALPPLLHLLKSD---SERTQHDSALALYHLSLVKSNRTKL 388 (546)
Q Consensus 325 ~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~l~~Lv~lL~~~---~~~~~~~A~~aL~~Ls~~~~n~~~i 388 (546)
.+|..|..+|..+.........+.. ...+..|+++++.+ ...++..|+.+|..|+....-...+
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V 305 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDV 305 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHH
Confidence 4566677777777666666666655 44999999999864 5678888999999888755433333
No 416
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=36.17 E-value=1.2e+02 Score=22.65 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=38.6
Q ss_pred HHHHhcCChhhHHHHHHCCcHHHHHHH-HhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 458 LYALSHGGLRFKGLAAAAGMAEVLMRM-ERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 458 L~~L~~~~~~~~~~~~~~g~v~~L~~l-l~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
|..||.. ...+..+++.|+.+.|-++ ....++.+++..-.+...|-+..+
T Consensus 2 LllL~~T-~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~ 52 (58)
T PF04064_consen 2 LLLLCAT-REGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEP 52 (58)
T ss_pred HhHHhcc-HHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 4455654 4678889999999999888 555689999999999998876543
No 417
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.86 E-value=2.1e+02 Score=24.50 Aligned_cols=40 Identities=20% Similarity=0.052 Sum_probs=32.8
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 009036 352 ALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKL 391 (546)
Q Consensus 352 ~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~ 391 (546)
+|+.|+.-|.+.++++...|+.+|...|..+.+...++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 5788889999889999999999999999877665555554
No 418
>PHA03096 p28-like protein; Provisional
Probab=35.19 E-value=23 Score=35.64 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=29.2
Q ss_pred eeCcccccccCC--------CeecCCCccccHHHHHHHHhcC--CCCCCCCCC
Q 009036 46 FLCPVSGSLMAD--------PVVVSSGHTFERACAHVCKTLG--FTPTLVDGT 88 (546)
Q Consensus 46 ~~CpI~~~~m~d--------PV~~~~G~ty~r~~i~~~~~~~--~~~cp~~~~ 88 (546)
-.|-||++.-.+ =.+-.|-|.||-.||..|.... ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 458888886332 2234789999999999998642 235666544
No 419
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=34.47 E-value=36 Score=22.08 Aligned_cols=9 Identities=22% Similarity=-0.020 Sum_probs=6.1
Q ss_pred CCCCCCCCC
Q 009036 81 TPTLVDGTT 89 (546)
Q Consensus 81 ~~cp~~~~~ 89 (546)
..||.|+..
T Consensus 18 ~~CP~Cg~~ 26 (33)
T cd00350 18 WVCPVCGAP 26 (33)
T ss_pred CcCcCCCCc
Confidence 378888653
No 420
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=34.21 E-value=1.1e+03 Score=30.28 Aligned_cols=272 Identities=11% Similarity=0.033 Sum_probs=136.8
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhhH---HhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChH
Q 009036 238 SPQVHEVEEALISLRKLTRSREETRV---SLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVP 313 (546)
Q Consensus 238 s~~~~~~~~Al~~L~~La~~~~~~r~---~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~ 313 (546)
+.+..+...|+..|+.++..--+... .=.+..++.++...+. +.+.++++..+.++.+|...... .| + .+.+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~--nI-k-SGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN--NV-K-SGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh--hh-h-cCcH
Confidence 34567788889988887764221111 1123456777777665 56789999999999887653221 11 2 3677
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHhhcccccchhhHHhh--cC----ChHHHHHhhccC-CHHHHHHHHHHHHHhhcC-
Q 009036 314 PIVDVLM----AGSAEAQEHACGAIFSLALDDQNKTAIGV--LG----ALPPLLHLLKSD-SERTQHDSALALYHLSLV- 381 (546)
Q Consensus 314 ~Lv~lL~----~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g----~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~- 381 (546)
.+..+|. .....+...|-.++..+..+. -..+.. .+ .+..|..+.... +.+.--.|+..|++++..
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~--f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY--FPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh--hhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 7777776 335667767766666543321 011110 12 344444444332 344555666666654210
Q ss_pred ---ch------------------------hHHHHH-----hcCcHHHHHHH---HhCc--hHHHHHHHHHHHhhCCcc--
Q 009036 382 ---KS------------------------NRTKLV-----KLGSVNALLGM---VNSG--HMTGRVLLILGNLASCSD-- 422 (546)
Q Consensus 382 ---~~------------------------n~~~iv-----~~Gav~~Lv~l---L~~~--~~~e~al~~L~nLa~~~e-- 422 (546)
.- .-..+. ...-++.|..+ ..+. +++..|+.+|..+-....
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 00 000000 01122222222 2232 378888888877653111
Q ss_pred ----cHHHHHhCCcHHHHHHHHccC----------------CC----CCHHHHHHHHHHHHHHhcC----ChhhHHHHHH
Q 009036 423 ----GRVAVLDSGGVECLVGMLRKG----------------TE----LSESTQESCVSVLYALSHG----GLRFKGLAAA 474 (546)
Q Consensus 423 ----~r~~i~~~g~i~~Lv~lL~~~----------------~~----~s~~~~e~Av~~L~~L~~~----~~~~~~~~~~ 474 (546)
.=..+. .+++.+++..++.. .. .+....+-+..+|..++.- -+....++.
T Consensus 1382 Fs~~~W~~if-~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076 1382 FSLPLWERVF-ESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 011111 24555555555321 00 0112345555666555531 112222222
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHH
Q 009036 475 AGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDE 518 (546)
Q Consensus 475 ~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~ 518 (546)
+.+..|...+...++.+.+....+|+.|-......=...+|+.
T Consensus 1460 -~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~ 1502 (1780)
T PLN03076 1460 -KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLE 1502 (1780)
T ss_pred -HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 2455666667777888888888888888654433333445643
No 421
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=33.23 E-value=57 Score=29.64 Aligned_cols=47 Identities=6% Similarity=-0.012 Sum_probs=32.9
Q ss_pred CceeCcccccccCCCeecCCCc-----cccHHHHHHHHhcC-CCCCCCCCCCCC
Q 009036 44 GEFLCPVSGSLMADPVVVSSGH-----TFERACAHVCKTLG-FTPTLVDGTTPD 91 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~~~G~-----ty~r~~i~~~~~~~-~~~cp~~~~~~~ 91 (546)
.+-.|-||.+--. +..-||.. -.=++|+++|++.. ...|+.|+.+..
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3446999988643 44556654 23689999999864 558999987654
No 422
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=32.92 E-value=70 Score=34.57 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=48.3
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHh-cCChHHHHHHHccCCHHHHHHHHHHHhhcc
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLA 338 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls 338 (546)
.....|-.+....++++++.|..++.+++.+.+||....- ...-..+++.+....+++-..++.+|..+.
T Consensus 328 ~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 328 DMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 3445555566678999999999999999999888775543 234455666666666666566666665554
No 423
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=32.90 E-value=3e+02 Score=28.50 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=59.9
Q ss_pred ChHHHHHHHccC-------CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhcc----------CCHHHHHHHHH
Q 009036 311 LVPPIVDVLMAG-------SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKS----------DSERTQHDSAL 373 (546)
Q Consensus 311 ~l~~Lv~lL~~~-------~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~----------~~~~~~~~A~~ 373 (546)
.+|.++.++..+ +.....+.++.+..|..++...-...-...++.++..+-. ++-.+|..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 466666666533 3555666777777777666443322223366777766532 12368899999
Q ss_pred HHHHhhcCchhHHHHHhcCcHHHHHHHHhCch----HHHHHHHHHHHh
Q 009036 374 ALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH----MTGRVLLILGNL 417 (546)
Q Consensus 374 aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al~~L~nL 417 (546)
+|..+|..-.+...-+..-++..|.+.|.++. ...-|+..|..|
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999863222211222234446666666543 344455555544
No 424
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=32.58 E-value=2.8e+02 Score=24.68 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=51.8
Q ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHH-HHHHHhc---CCHHHHHHHHHHHHHhhc
Q 009036 432 GVECLVGMLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEV-LMRMERV---GSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~-L~~ll~~---~s~~~k~~A~~lL~~L~~ 505 (546)
++..|-+.|..+ .++.++..|+.+|-.+..+ +..+...+..-..+.- |+.++.. ....++.+...+++..+.
T Consensus 39 a~ralkkRl~~~--~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGN--KNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccC--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 566777777542 3577888898888877764 4466666666667775 8888763 245899999999988874
No 425
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.54 E-value=23 Score=28.74 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=11.4
Q ss_pred cccHHHHHHHHhc
Q 009036 66 TFERACAHVCKTL 78 (546)
Q Consensus 66 ty~r~~i~~~~~~ 78 (546)
-|||.|+.+|...
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999975
No 426
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=32.26 E-value=7.8e+02 Score=28.47 Aligned_cols=162 Identities=13% Similarity=0.197 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC---CHHHHHHHHHHHhhcccccch-hhHH----------hhcCCh
Q 009036 288 NAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG---SAEAQEHACGAIFSLALDDQN-KTAI----------GVLGAL 353 (546)
Q Consensus 288 ~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~---~~~~~~~Aa~~L~~Ls~~~~~-k~~i----------~~~g~l 353 (546)
.++.+|++++....-+..+ .+|+.|-.+|-.+ +..++...-+.+..|...... +..+ .-...|
T Consensus 230 k~lEtLls~c~KKsk~~a~---~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfi 306 (988)
T KOG2038|consen 230 KSLETLLSSCKKKSKRDAL---QALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEHELKILYFRFI 306 (988)
T ss_pred HHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHHHHHHHHHHHH
Confidence 4556666666554222222 3466666665543 344444443433333211111 1111 001234
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhh-CCcccHHHHHhC
Q 009036 354 PPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLA-SCSDGRVAVLDS 430 (546)
Q Consensus 354 ~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa-~~~e~r~~i~~~ 430 (546)
+.|..+-.+.-+.++..++.+++.|..+.+-++. .++..||.-|.++. +...|-..|.+|. .+|.-+..
T Consensus 307 evLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V---- 378 (988)
T KOG2038|consen 307 EVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV---- 378 (988)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee----
Confidence 4444444455678999999999998776544332 34667788887765 6666777777664 55544433
Q ss_pred CcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 431 GGVECLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 431 g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
++..+..++.+.+ .+..++.+|+..|-.+.
T Consensus 379 -vi~EIer~~FRpn-~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 379 -VIDEIERLAFRPN-VSERAHYYAVIFLNQMK 408 (988)
T ss_pred -hHHHHHHHHcccC-ccccceeehhhhhhhhH
Confidence 3355566665543 34566677777775553
No 427
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=31.97 E-value=27 Score=33.13 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=33.0
Q ss_pred eCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCC
Q 009036 47 LCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGT 88 (546)
Q Consensus 47 ~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~ 88 (546)
.|.+|..+.-.=+-- +||..|-+.|+++++.+ ..-||.|+-
T Consensus 183 ~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d 224 (235)
T KOG4718|consen 183 NCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGD 224 (235)
T ss_pred HHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhc
Confidence 599999987766554 88899999999999876 556887743
No 428
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=31.92 E-value=33 Score=31.54 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=16.6
Q ss_pred ceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCC
Q 009036 45 EFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTT 89 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~ 89 (546)
.+.||+|+.++.|. ....||.|+.+
T Consensus 134 ~~vC~vCGy~~~ge--------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE--------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC--------------------CCCcCCCCCCh
Confidence 68899995544432 34479988765
No 429
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=31.73 E-value=42 Score=34.12 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=36.1
Q ss_pred CCceeCcccccccCCCeecCCCccccHHHHHHHHhc-CCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL-GFTPTLVDGTT 89 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-~~~~cp~~~~~ 89 (546)
.+.-.|-||-+-..=--++||||..|..|--+.-.. ....||.|+..
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 466789999998888888999999999998664332 34467777653
No 430
>PLN02400 cellulose synthase
Probab=31.34 E-value=25 Score=41.44 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=35.2
Q ss_pred eeCcccccc-----cCCCeec--CCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 46 FLCPVSGSL-----MADPVVV--SSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 46 ~~CpI~~~~-----m~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
=.|.||++= .-||-+. .||--.||.|.|-=.+.|+..||.|+....
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 379999874 4557664 788889999995544568889999987654
No 431
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=31.05 E-value=5.8e+02 Score=28.16 Aligned_cols=137 Identities=12% Similarity=0.005 Sum_probs=79.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHcc--------CCHHHHHHHHHHHhhcccccchhh
Q 009036 274 LRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMA--------GSAEAQEHACGAIFSLALDDQNKT 345 (546)
Q Consensus 274 Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~--------~~~~~~~~Aa~~L~~Ls~~~~~k~ 345 (546)
+.+.+.+.+...+..|+..|.. +..-. ..+|.++.++.. .+.+...+....+++|..+....-
T Consensus 212 It~a~~g~~~~~r~eAL~sL~T---DsGL~------~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~l 282 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLET---DSGLQ------QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFL 282 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhcc---CccHH------HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccch
Confidence 3344445666667767666552 11111 135555555543 256677788888888877664322
Q ss_pred HHhhcCChHHHHHhhccC----------CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch----HHHHHH
Q 009036 346 AIGVLGALPPLLHLLKSD----------SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH----MTGRVL 411 (546)
Q Consensus 346 ~i~~~g~l~~Lv~lL~~~----------~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al 411 (546)
.-.-...+|.++..+-+. +-.++.-|+.++..+|........-...-++..|.+.+.+.. ...-++
T Consensus 283 epYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai 362 (576)
T KOG2549|consen 283 EPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAI 362 (576)
T ss_pred hhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHH
Confidence 222234566666555431 224777888899988886555544455567777777777642 344455
Q ss_pred HHHHHhhC
Q 009036 412 LILGNLAS 419 (546)
Q Consensus 412 ~~L~nLa~ 419 (546)
..|..|..
T Consensus 363 ~gL~~lg~ 370 (576)
T KOG2549|consen 363 AGLSELGH 370 (576)
T ss_pred HHHHHhhh
Confidence 55555443
No 432
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=30.98 E-value=33 Score=29.02 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=26.2
Q ss_pred CCeec--CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009036 57 DPVVV--SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCH 110 (546)
Q Consensus 57 dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~ 110 (546)
.||.+ .---|.||.||++|=. -|. +..++..+. .-+-.+|..|..
T Consensus 64 HPVFiAQHATatCCRgCL~KWH~---Ip~---gr~Lt~~eq---~yiv~vi~~Wi~ 110 (111)
T PF13811_consen 64 HPVFIAQHATATCCRGCLEKWHG---IPK---GRELTEEEQ---AYIVDVIMRWIE 110 (111)
T ss_pred CCeeeecCCCccchHHHHHHHhC---CCC---CCCCCHHHH---HHHHHHHHHHHh
Confidence 68887 3345899999999932 122 233333221 224566777764
No 433
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=30.80 E-value=27 Score=21.53 Aligned_cols=8 Identities=38% Similarity=0.991 Sum_probs=3.8
Q ss_pred Cccccccc
Q 009036 48 CPVSGSLM 55 (546)
Q Consensus 48 CpI~~~~m 55 (546)
||-|....
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555443
No 434
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.08 E-value=51 Score=25.56 Aligned_cols=36 Identities=17% Similarity=0.026 Sum_probs=25.4
Q ss_pred CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHH
Q 009036 62 SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLA 100 (546)
Q Consensus 62 ~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~ 100 (546)
.=-+|||..|-+.-+ +..||.|+-.+.....+|--.
T Consensus 26 tfEcTFCadCae~~l---~g~CPnCGGelv~RP~RPaa~ 61 (84)
T COG3813 26 TFECTFCADCAENRL---HGLCPNCGGELVARPIRPAAK 61 (84)
T ss_pred EEeeehhHhHHHHhh---cCcCCCCCchhhcCcCChHHH
Confidence 346899999987653 346888887776666666543
No 435
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=30.03 E-value=60 Score=32.21 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=38.6
Q ss_pred CCCCCceeCcccccccCC-------------Cee-cCCCccccHHHHHH-HHhc--CCC--CCCCCCCCCCCCCCcccHH
Q 009036 40 AEPPGEFLCPVSGSLMAD-------------PVV-VSSGHTFERACAHV-CKTL--GFT--PTLVDGTTPDFSTVIPNLA 100 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~d-------------PV~-~~~G~ty~r~~i~~-~~~~--~~~--~cp~~~~~~~~~~l~pn~~ 100 (546)
.+-+..|.|++|...+.- |-. .-||--|.|.++.+ .++. |.. .||.|++.+.+ +-|
T Consensus 156 ~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD---RSN-- 230 (279)
T KOG2462|consen 156 LDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD---RSN-- 230 (279)
T ss_pred ccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc---hHH--
Confidence 344778889999887532 222 24677788877755 5553 333 59999887655 444
Q ss_pred HHHHHH
Q 009036 101 LKSTIL 106 (546)
Q Consensus 101 l~~~i~ 106 (546)
||.-++
T Consensus 231 LRAHmQ 236 (279)
T KOG2462|consen 231 LRAHMQ 236 (279)
T ss_pred HHHHHH
Confidence 454444
No 436
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=29.64 E-value=7.4e+02 Score=26.72 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC------CHHHHHHHHHHHhhccccc--chhhHHhhc--CCh
Q 009036 284 NVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG------SAEAQEHACGAIFSLALDD--QNKTAIGVL--GAL 353 (546)
Q Consensus 284 ~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~------~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~--g~l 353 (546)
.....+-.++.||+...... ..+..|..+|.+. +..+..-|..+|..+.... +....+.-. -.+
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl 303 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGH------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVL 303 (464)
T ss_pred ccchhHHHHHHHHHcCccHH------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHH
Confidence 45566667777777643332 2567788888322 4555667777777765554 222222222 277
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036 354 PPLLHLLKSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 354 ~~Lv~lL~~~~~~~~~~A~~aL~~Ls~ 380 (546)
+.|...++..+..+--+.+.++.+|-.
T Consensus 304 ~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 304 PSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 888888887766665666666666653
No 437
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=29.60 E-value=7.4e+02 Score=30.38 Aligned_cols=228 Identities=16% Similarity=0.098 Sum_probs=117.4
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh-hhHHhhcCChHHHHHHH-Hc------cC--CHHHHHHHHHHHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREE-TRVSLCTPRLLLALRSL-II------SR--YTNVQVNAVAALVN 295 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~l~~~g~i~~Lv~l-L~------s~--~~~v~~~A~~~L~n 295 (546)
..-+++|++.+-+..|++|.-+.-.|+.+.+.... .-....+.-++..|..+ |. ++ -..+++..+++|..
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 45678899999999999999999999988775331 11122222222222221 11 11 23567777788777
Q ss_pred hhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh--hcCChHHHHHhhccCCHHHHHHHHH
Q 009036 296 LSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG--VLGALPPLLHLLKSDSERTQHDSAL 373 (546)
Q Consensus 296 Ls~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~l~~Lv~lL~~~~~~~~~~A~~ 373 (546)
+..+-..... ...+..+..++.....+++.-.+..+.+... .....+. -.-++...+.-|.+.+..++..|+.
T Consensus 156 ~l~~~~~s~~---~~~~~il~q~~~q~~w~ir~Ggll~iky~~a--ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~ 230 (1549)
T KOG0392|consen 156 YLKHMDESLI---KETLDILLQMLRQPNWEIRHGGLLGIKYNVA--IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQ 230 (1549)
T ss_pred HHHhhhhHhh---HHHHHHHHHHHcCcchhheechHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 6654221111 1234555555555444444333333322111 0011111 1124455556666677888888888
Q ss_pred HHHHhhcCc--hhHHHHHhcCcHHHHHHHHhC----chHHHHHHHHHHHhhCCcccHHHHH----hCCcHHHHHHHHccC
Q 009036 374 ALYHLSLVK--SNRTKLVKLGSVNALLGMVNS----GHMTGRVLLILGNLASCSDGRVAVL----DSGGVECLVGMLRKG 443 (546)
Q Consensus 374 aL~~Ls~~~--~n~~~iv~~Gav~~Lv~lL~~----~~~~e~al~~L~nLa~~~e~r~~i~----~~g~i~~Lv~lL~~~ 443 (546)
.|.-..... .+..+|. .++..+...+.. ..-.......|..+|...+.-.... +.|.++.+.-.++..
T Consensus 231 ~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~ 308 (1549)
T KOG0392|consen 231 FLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHT 308 (1549)
T ss_pred HhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 877665432 1122222 123333333322 2244455566666666553322222 246778887777763
Q ss_pred CCCCHHHHHHHHHHHHHHhc
Q 009036 444 TELSESTQESCVSVLYALSH 463 (546)
Q Consensus 444 ~~~s~~~~e~Av~~L~~L~~ 463 (546)
=..+...++..+..+..
T Consensus 309 ---i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 309 ---ISSVRRAALETLAMLLE 325 (1549)
T ss_pred ---HHHHHHHHHHHHHHHHh
Confidence 13456666666666654
No 438
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=29.53 E-value=52 Score=39.21 Aligned_cols=59 Identities=27% Similarity=0.309 Sum_probs=36.2
Q ss_pred cCCCCccchhhhccCCCCCCCCCCceeCccccc--ccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 21 YRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGS--LMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~p~~~~CpI~~~--~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
+|.|-..|-=+++..-++.-++|.+++||-|.. ++.|+ .+-+| | +.....||.|+.++.
T Consensus 890 SRGSVGSSlVAtm~gITEVNPL~PHY~Cp~Cky~Ef~~d~-svgsG--f---------DLpdK~CPkCg~pl~ 950 (1444)
T COG2176 890 SRGSVGSSLVATMIGITEVNPLPPHYLCPECKYSEFIDDG-SVGSG--F---------DLPDKDCPKCGTPLK 950 (1444)
T ss_pred CCCcchHHHHHHhhcccccCCCCccccCCCCceeeeecCC-CcCCC--C---------CCCCCCCCcCCCccc
Confidence 344444444445555555557899999999974 45555 22223 2 234558999998764
No 439
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=29.47 E-value=88 Score=28.27 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 009036 478 AEVLMRMERVGSEHVKEKAKRMLEL 502 (546)
Q Consensus 478 v~~L~~ll~~~s~~~k~~A~~lL~~ 502 (546)
+..|+.++.+.++.+...|.+.|+.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKN 120 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4566666665566666666666554
No 440
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=29.47 E-value=3.6e+02 Score=28.16 Aligned_cols=139 Identities=14% Similarity=0.003 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHhhcCchhHHHHHhcC---cHHHHHHHHhCch-HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHH
Q 009036 364 SERTQHDSALALYHLSLVKSNRTKLVKLG---SVNALLGMVNSGH-MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGM 439 (546)
Q Consensus 364 ~~~~~~~A~~aL~~Ls~~~~n~~~iv~~G---av~~Lv~lL~~~~-~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~l 439 (546)
+.++...|+.+|..+..+++.-..+-+.- .+...+..+.++. .+.-+-..|..|+.+.=.. .++....+..++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-KIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-cccchhhHHHHHHH
Confidence 55777888888888776655443333331 3455555665544 3334444455555432221 24444444455554
Q ss_pred HccCC--CCCHHHHHHHHHHHHHHhcCChhhHHHHHHCC-cHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 440 LRKGT--ELSESTQESCVSVLYALSHGGLRFKGLAAAAG-MAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 440 L~~~~--~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g-~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
+.... -.+..+....+.++.+|....+.. ++.+.+ -++.|+..+-+....++.+|..++..+..
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~ 204 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKK 204 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 43321 134556677777777777543221 222222 45677776667778888888888777754
No 441
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=29.41 E-value=6.2e+02 Score=27.95 Aligned_cols=141 Identities=12% Similarity=-0.005 Sum_probs=81.1
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhcc--------CCHHHHHHHHHHHHHhhcCch
Q 009036 312 VPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKS--------DSERTQHDSALALYHLSLVKS 383 (546)
Q Consensus 312 l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~--------~~~~~~~~A~~aL~~Ls~~~~ 383 (546)
...+++.+..+++..+..|+..|..= ... .-.++.++.++.+ .+.+.....+..++.|..++.
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~TD---sGL------~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLETD---SGL------QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC---ccH------HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 44555555556666666665554421 111 1234555555544 245666677778888877665
Q ss_pred hHHHHHhcCcHHHHHHHHhCch------------HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHH
Q 009036 384 NRTKLVKLGSVNALLGMVNSGH------------MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQ 451 (546)
Q Consensus 384 n~~~iv~~Gav~~Lv~lL~~~~------------~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~ 451 (546)
..-.-.=.-++|.++.++-++. ++.-|+.+|..+|..-.....-++..++..+.+.+.+.. ......
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~-~~~st~ 358 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK-KPLSTH 358 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC-CCchhh
Confidence 5444443456777777664321 677788888888865443333355566777777776642 223445
Q ss_pred HHHHHHHHHHh
Q 009036 452 ESCVSVLYALS 462 (546)
Q Consensus 452 e~Av~~L~~L~ 462 (546)
.-|+..|..|.
T Consensus 359 YGai~gL~~lg 369 (576)
T KOG2549|consen 359 YGAIAGLSELG 369 (576)
T ss_pred hhHHHHHHHhh
Confidence 55555555554
No 442
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=29.18 E-value=2.4e+02 Score=29.65 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=61.0
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~ 298 (546)
...+..|.++|...++.+++.|+..|-.++..+. ..|..+....+..-|..++. +..+.+.+....++.+.+.
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999888754 56778888999999999998 6678888777666666664
No 443
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=29.14 E-value=1.9e+02 Score=26.91 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=48.4
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 433 i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
++.++++..+ .+...+..|+.+|..+-+.+-..-. -+++.|+-|..+.++.++..|..+++.+.+.-
T Consensus 10 l~~Il~~~~~---~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 10 LKNILELCLS---SDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHhC---CCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 3455555544 4578888898888877654311111 15789999999999999999999999998654
No 444
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=29.07 E-value=38 Score=20.76 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc
Q 009036 326 AQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK 361 (546)
Q Consensus 326 ~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~ 361 (546)
+|..|+.+|..+ +...+++.|++.|+
T Consensus 1 VR~~Aa~aLg~i----------gd~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQI----------GDPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-----------SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----------CCHHHHHHHHHHhc
Confidence 466777788777 33446677776664
No 445
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.98 E-value=1.4e+02 Score=25.47 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=32.6
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHh
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVR 308 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~ 308 (546)
+|+.|+..|.+.+.++...|+.+|...+.++.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 588999999999999999999999998887766655554
No 446
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=28.92 E-value=7.1e+02 Score=28.42 Aligned_cols=134 Identities=20% Similarity=0.142 Sum_probs=83.9
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHH-HccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSL-IISRYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~l-L~s~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
..+.+|+..|.+.+..+.+++-..|..+.....+. -++..|+.. +..++.. |+.+|..+ .++..|.
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~y~~~t~s~~----~~~il~~~-~~P~~K~- 70 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP-------WLVNGLVDYYLSTNSQR----ALEILVGV-QEPHDKH- 70 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-------HHHHHHHHHHhhcCcHH----HHHHHHhc-CCccHHH-
Confidence 45788999999999888888777777655432111 235555553 3333433 34444432 2232232
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhc
Q 009036 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSL 380 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~ 380 (546)
++..|=+.+. .+..|..++.+|..+.... .....|.+...+..|++.|..+ +..+...|+.+|.-|-.
T Consensus 71 -----~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 71 -----LFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred -----HHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 2333334444 3567778888998887654 4567778888999999999865 66666777777776654
No 447
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=28.57 E-value=2.1e+02 Score=24.94 Aligned_cols=52 Identities=15% Similarity=0.230 Sum_probs=37.3
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhc-CChHHHHHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCT-PRLLLALRSL 277 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~-~g~i~~Lv~l 277 (546)
....+.|.++|+..++-++.++++.|..++.... ..+..+.+ ...|..+..+
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f 90 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANY 90 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHc
Confidence 3667899999998889999999999999888755 44555554 2334444443
No 448
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.50 E-value=4.5e+02 Score=31.42 Aligned_cols=133 Identities=12% Similarity=0.070 Sum_probs=81.1
Q ss_pred CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH--hcCChHH
Q 009036 237 KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV--RSGLVPP 314 (546)
Q Consensus 237 ~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~--~~g~l~~ 314 (546)
+.-.+++|..++..|....+.-+ ..+.+.-.+..+-..|...+.+|+..++.+|..|...++.+..+. -.-+=..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 34455666666666655554332 234445566777777888899999999999999988755544332 2224455
Q ss_pred HHHHH-ccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 009036 315 IVDVL-MAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYH 377 (546)
Q Consensus 315 Lv~lL-~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~ 377 (546)
++++. +.-+..++.....++..+.... +....-+..+..++-+.++++...|...|+.
T Consensus 374 IVeMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 66666 3335666666655555442211 1112245566777888888888888776664
No 449
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=28.31 E-value=33 Score=24.31 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=20.8
Q ss_pred CcccccccC--CCeecCCCcc-----ccHHHHHHHHhc-CCCCCCCC
Q 009036 48 CPVSGSLMA--DPVVVSSGHT-----FERACAHVCKTL-GFTPTLVD 86 (546)
Q Consensus 48 CpI~~~~m~--dPV~~~~G~t-----y~r~~i~~~~~~-~~~~cp~~ 86 (546)
|-||++--. +|.+.||+-+ .=+.|+++|+.. +...|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 345555432 2677787633 357899999974 55567654
No 450
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=28.31 E-value=2.8e+02 Score=34.62 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=73.2
Q ss_pred HHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHH
Q 009036 277 LIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPP 355 (546)
Q Consensus 277 lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~ 355 (546)
+|.+.++.+++-+......+....+. +.+..++..|+..+.+|+..-...|+.+|..|+... ...+.. ...|..
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds---~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~--~~~l~~fa~~l~g 517 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDS---YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKN--PSELQPFATFLKG 517 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-H---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---HHHHHHTHHHHHG
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHH
Confidence 45678889998888888777765432 223347778888888887666678899999888542 222221 334455
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHH
Q 009036 356 LLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGN 416 (546)
Q Consensus 356 Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~n 416 (546)
+++.+..=+..=.+....+|+.|+........-+....--.+-+.|.+...+.+-.++|..
T Consensus 518 iLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGa 578 (1426)
T PF14631_consen 518 ILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGA 578 (1426)
T ss_dssp GGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHH
Confidence 5555555344444556777887776432211112222222233445555555554444433
No 451
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=28.16 E-value=6.7e+02 Score=25.72 Aligned_cols=197 Identities=11% Similarity=0.052 Sum_probs=124.3
Q ss_pred HhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHh-----cCChHHHHHHHccCCHHHHHHHHHHHhhc
Q 009036 264 SLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVR-----SGLVPPIVDVLMAGSAEAQEHACGAIFSL 337 (546)
Q Consensus 264 ~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~-----~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~L 337 (546)
.+..+|.+..|+..+..-+-+.+..++.+..|+-.- -..+...++ ...+..|+.--.. .+++-..+-..|...
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLREC 152 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHH
Confidence 445689999999999888888888888887777552 222222221 1223333332111 244444444444555
Q ss_pred ccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcC---cHHH-HHHHHhCch--HHHHH
Q 009036 338 ALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK-SNRTKLVKLG---SVNA-LLGMVNSGH--MTGRV 410 (546)
Q Consensus 338 s~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~-~n~~~iv~~G---av~~-Lv~lL~~~~--~~e~a 410 (546)
.........|....-+......++.++=++...|..+...|...+ ....++.... ..+. --.++.+++ ++..+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 455555566666777888888888776677778888777775533 2333333332 1222 344555666 78889
Q ss_pred HHHHHHhhCCcccHHHHH----hCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036 411 LLILGNLASCSDGRVAVL----DSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG 464 (546)
Q Consensus 411 l~~L~nLa~~~e~r~~i~----~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~ 464 (546)
+.+|..+-....+...+. +...+..++.+|++ .+...|-.|..+.+-....
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrd---kskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRD---KSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhC---ccccchHHHHHHHHHHhcC
Confidence 999999887666655544 24678888999988 4677888888888776653
No 452
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.59 E-value=2.5e+02 Score=31.07 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=15.0
Q ss_pred ChHHHHHHH-HccCCHHHHHHHHHHHHHhhc
Q 009036 269 RLLLALRSL-IISRYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 269 g~i~~Lv~l-L~s~~~~v~~~A~~~L~nLs~ 298 (546)
|+|..|+.. ....+.+++..|+-+|.-++.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~ 581 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCC 581 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEe
Confidence 344444443 334455566666655554443
No 453
>PRK04023 DNA polymerase II large subunit; Validated
Probab=27.23 E-value=55 Score=38.33 Aligned_cols=68 Identities=16% Similarity=0.049 Sum_probs=39.0
Q ss_pred CCCC-CceeCcccccccCCCeec--CCCc-----cccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 009036 40 AEPP-GEFLCPVSGSLMADPVVV--SSGH-----TFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHK 111 (546)
Q Consensus 40 ~~~p-~~~~CpI~~~~m~dPV~~--~~G~-----ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~ 111 (546)
..++ ....||=|+... +... .||. .||..| .+. .+..+||.|+..... .-.-...++.+...-.+.
T Consensus 620 ~eVEVg~RfCpsCG~~t--~~frCP~CG~~Te~i~fCP~C--G~~-~~~y~CPKCG~El~~-~s~~~i~l~~~~~~A~~~ 693 (1121)
T PRK04023 620 IEVEIGRRKCPSCGKET--FYRRCPFCGTHTEPVYRCPRC--GIE-VEEDECEKCGREPTP-YSKRKIDLKELYDRALEN 693 (1121)
T ss_pred eeecccCccCCCCCCcC--CcccCCCCCCCCCcceeCccc--cCc-CCCCcCCCCCCCCCc-cceEEecHHHHHHHHHHH
Confidence 3444 667788888875 2222 4773 589998 221 234689999887654 223334455555544444
Q ss_pred cC
Q 009036 112 QS 113 (546)
Q Consensus 112 ~~ 113 (546)
-+
T Consensus 694 lg 695 (1121)
T PRK04023 694 LG 695 (1121)
T ss_pred hC
Confidence 33
No 454
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.10 E-value=1.8e+02 Score=32.07 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=35.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHH-HccCCHHHHHHHHHHHhhccccc
Q 009036 271 LLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDV-LMAGSAEAQEHACGAIFSLALDD 341 (546)
Q Consensus 271 i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~l-L~~~~~~~~~~Aa~~L~~Ls~~~ 341 (546)
=..+-+++.+.++..+-..+-.+.. +..-.. +.|++..|+.. .+.++..+|..|.-+|..++..+
T Consensus 518 dd~I~ell~d~ds~lRy~G~fs~al-Ay~GTg-----n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D 583 (926)
T COG5116 518 DDYINELLYDKDSILRYNGVFSLAL-AYVGTG-----NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD 583 (926)
T ss_pred HHHHHHHhcCchHHhhhccHHHHHH-HHhcCC-----cchhHhhhheeecccCchHHHHHHHHheeeeEecC
Confidence 3355567777777777555444331 111111 12455555555 45556677777766666665543
No 455
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=26.93 E-value=6.8e+02 Score=26.13 Aligned_cols=172 Identities=10% Similarity=0.047 Sum_probs=93.0
Q ss_pred cCCHHHHHHHHHHHHHhhcCC---chHHHHHhcCChHHHHHHHc----c-------CCHHHHHHHHHHHhhcccccchhh
Q 009036 280 SRYTNVQVNAVAALVNLSLEK---INKMLIVRSGLVPPIVDVLM----A-------GSAEAQEHACGAIFSLALDDQNKT 345 (546)
Q Consensus 280 s~~~~v~~~A~~~L~nLs~~~---~nk~~i~~~g~l~~Lv~lL~----~-------~~~~~~~~Aa~~L~~Ls~~~~~k~ 345 (546)
+.+..-+..|-..|.+.-... .....+.+ -++.++..++ . .+.++...|..+|..+..+.+...
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 344555666666666544322 22333322 3444444432 2 256788899999998877765544
Q ss_pred HHhhcC---ChHHHHHhhccC--CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC-------chHHHHHHHH
Q 009036 346 AIGVLG---ALPPLLHLLKSD--SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS-------GHMTGRVLLI 413 (546)
Q Consensus 346 ~i~~~g---~l~~Lv~lL~~~--~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~-------~~~~e~al~~ 413 (546)
.+...- .+...+..|.++ +..+...++++|.. .....+++....+..|+..+.. ..+....+.+
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~----Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD----QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 443321 344555556443 33344444444442 1112223344455555555432 2377788888
Q ss_pred HHHhhCCcccHHHHHh-CC-cHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 414 LGNLASCSDGRVAVLD-SG-GVECLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 414 L~nLa~~~e~r~~i~~-~g-~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
+.+|... .+..+.+ .+ .++.++..+.+. ...++..|...+..+.
T Consensus 158 ~~~ll~q--~p~~M~~~~~~W~~~l~~~l~~~---~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 158 YKRLLSQ--FPQQMIKHADIWFPILFPDLLSS---AKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHH
Confidence 8888763 3344554 33 677887777663 3566666666665543
No 456
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=26.42 E-value=4.3e+02 Score=33.84 Aligned_cols=151 Identities=14% Similarity=0.178 Sum_probs=86.0
Q ss_pred CchhHHHHHHhcCCCCHHH-------HHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHH----ccCCHHHHHHHHHHH
Q 009036 225 SNEQEDYFVQKLKSPQVHE-------VEEALISLRKLTRSREETRVSLCTPRLLLALRSLI----ISRYTNVQVNAVAAL 293 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~-------~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL----~s~~~~v~~~A~~~L 293 (546)
+.+++..+++.|-.-+.++ +.-++..|..++..|. .|..+.=......+...+ -+.+..+...|+..|
T Consensus 1083 ~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm-~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsL 1161 (1780)
T PLN03076 1083 NSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNM-NRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSL 1161 (1780)
T ss_pred CHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcc-cchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 3455555555553222222 3445555555555543 243333234444444432 234667778888888
Q ss_pred HHhhcCCchHHHH----HhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc----cCC
Q 009036 294 VNLSLEKINKMLI----VRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK----SDS 364 (546)
Q Consensus 294 ~nLs~~~~nk~~i----~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~----~~~ 364 (546)
..|+...-.+..+ .+...+.++..++.+. +.++++..+..+.+|..... ..| ..+-+.++.+|. +.+
T Consensus 1162 rQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI--kSGWktIF~VLs~aa~d~~ 1237 (1780)
T PLN03076 1162 RQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV--KSGWKSMFMVFTTAAYDDH 1237 (1780)
T ss_pred HHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh--hcCcHHHHHHHHHHHhCcc
Confidence 8887643222222 2345788899888754 78999999999988754321 111 125555666654 346
Q ss_pred HHHHHHHHHHHHHhhc
Q 009036 365 ERTQHDSALALYHLSL 380 (546)
Q Consensus 365 ~~~~~~A~~aL~~Ls~ 380 (546)
+.+...|..++..+..
T Consensus 1238 e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1238 KNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777777766553
No 457
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=25.68 E-value=29 Score=21.30 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=6.1
Q ss_pred eCccccccc
Q 009036 47 LCPVSGSLM 55 (546)
Q Consensus 47 ~CpI~~~~m 55 (546)
.||||.+.|
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 477777665
No 458
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=25.48 E-value=8.2e+02 Score=25.83 Aligned_cols=66 Identities=18% Similarity=0.083 Sum_probs=33.1
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHhhccc----ccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 009036 312 VPPIVDVLMAGSAEAQEHACGAIFSLAL----DDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYH 377 (546)
Q Consensus 312 l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~----~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~ 377 (546)
-..+...+..++.+-+.-+..++.-++. ..+.-..+...|-+..++..-.+.....+..++.+|.-
T Consensus 105 ~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v 174 (427)
T KOG2842|consen 105 EDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGPFLALILDDESASIKARSICATSLGT 174 (427)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccchHHHHHhhccccchHHHHHHHHHHHH
Confidence 3456667777655544444433332222 12333334445555555555555566666666654443
No 459
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=25.36 E-value=31 Score=31.29 Aligned_cols=20 Identities=15% Similarity=0.369 Sum_probs=17.5
Q ss_pred CceeCcccccccCCCeecCC
Q 009036 44 GEFLCPVSGSLMADPVVVSS 63 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~~~ 63 (546)
++..||||++.=.+.|.|-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46789999999999999855
No 460
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=25.25 E-value=7.4e+02 Score=25.23 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=78.7
Q ss_pred HHhhcCChHHHHHHHHcc-------C----------------CHHHHHHHHHHHHHhhcCCchHHHH-------------
Q 009036 263 VSLCTPRLLLALRSLIIS-------R----------------YTNVQVNAVAALVNLSLEKINKMLI------------- 306 (546)
Q Consensus 263 ~~l~~~g~i~~Lv~lL~s-------~----------------~~~v~~~A~~~L~nLs~~~~nk~~i------------- 306 (546)
..+++.|+||.|-.+.+. . +..++..-+..+.+++....++..+
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 456677888888777651 1 1134455666777777644333211
Q ss_pred ---------HhcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccc---hhhHHhhcCChHHHHHhhccC---CHHHHH
Q 009036 307 ---------VRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQ---NKTAIGVLGALPPLLHLLKSD---SERTQH 369 (546)
Q Consensus 307 ---------~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~---~k~~i~~~g~l~~Lv~lL~~~---~~~~~~ 369 (546)
.+.|.+..+++.+... +...+---+.++.++..... .+..+.+.|.++.|+..+-++ +.++..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 1346788888877754 56667777778877766543 355567789999999887654 446777
Q ss_pred HHHHHHHHhhcCch
Q 009036 370 DSALALYHLSLVKS 383 (546)
Q Consensus 370 ~A~~aL~~Ls~~~~ 383 (546)
...-.|..|.....
T Consensus 163 ~~FDLLGELiK~n~ 176 (303)
T PF12463_consen 163 SNFDLLGELIKFNR 176 (303)
T ss_pred HHHHHHHHHHCCCH
Confidence 77788888877543
No 461
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.19 E-value=1.7e+02 Score=31.67 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=58.2
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhh-hHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHh
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREET-RVSLCTPRLLLALRSLIIS--RYTNVQVNAVAALVNL 296 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~-r~~l~~~g~i~~Lv~lL~s--~~~~v~~~A~~~L~nL 296 (546)
.+++..|.++|.+.+..+|.-|+..|.-+.+.+... ...+++.+++.-+|..... .+..+|+.++..|...
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 467888999998888899999999888888876654 4477889999998888764 4788999999888654
No 462
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=24.81 E-value=93 Score=26.45 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHH
Q 009036 287 VNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQ 327 (546)
Q Consensus 287 ~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~ 327 (546)
...+..+..|+..++--..+++.|+++.|+.+|.+.+..+.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 44667788888889888889999999999999998866553
No 463
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=24.38 E-value=67 Score=27.30 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=29.8
Q ss_pred CCCCC-CceeCcccccccCCCeecC-CC-----ccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 39 TAEPP-GEFLCPVSGSLMADPVVVS-SG-----HTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 39 ~~~~p-~~~~CpI~~~~m~dPV~~~-~G-----~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
...-| +.+.|||++++=..=|.+. ++ .-||..++.+-...+.. =|.++.++..
T Consensus 33 ~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~-HPLSREpit~ 92 (113)
T PF06416_consen 33 EFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAP-HPLSREPITP 92 (113)
T ss_dssp CCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----T
T ss_pred hccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCC-CCCccCCCCh
Confidence 34444 6788999999999988873 22 45999999998776542 2345666554
No 464
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=24.32 E-value=28 Score=20.55 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=11.5
Q ss_pred eeCcccccccCCCee
Q 009036 46 FLCPVSGSLMADPVV 60 (546)
Q Consensus 46 ~~CpI~~~~m~dPV~ 60 (546)
|.|.||...|.++..
T Consensus 1 ~~C~~C~~~f~s~~~ 15 (25)
T PF12874_consen 1 FYCDICNKSFSSENS 15 (25)
T ss_dssp EEETTTTEEESSHHH
T ss_pred CCCCCCCCCcCCHHH
Confidence 678888888887643
No 465
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=23.95 E-value=3.9e+02 Score=29.06 Aligned_cols=39 Identities=5% Similarity=0.080 Sum_probs=21.2
Q ss_pred hhHHHHHHCCcHHHHHHHHh-cC-CHHHHHHHHHHHHHhhc
Q 009036 467 RFKGLAAAAGMAEVLMRMER-VG-SEHVKEKAKRMLELMKG 505 (546)
Q Consensus 467 ~~~~~~~~~g~v~~L~~ll~-~~-s~~~k~~A~~lL~~L~~ 505 (546)
..+..+.+.|+++.++.|.. .. +.-.--..-.++..+..
T Consensus 337 ~~k~~L~~~~il~~iLdLFfkypwNNFLH~~V~diIqqiln 377 (475)
T PF04499_consen 337 YLKIELIELGILPTILDLFFKYPWNNFLHNVVEDIIQQILN 377 (475)
T ss_pred HHHHHHHHCCcHHHHHHHHhcCcchhHHHHHHHHHHHHHhC
Confidence 34556677788887777733 33 33333444444444443
No 466
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=23.84 E-value=48 Score=33.37 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=11.8
Q ss_pred CCccccHHHHHHH
Q 009036 63 SGHTFERACAHVC 75 (546)
Q Consensus 63 ~G~ty~r~~i~~~ 75 (546)
||..|||.|.+.+
T Consensus 342 Cgf~FCR~C~e~y 354 (446)
T KOG0006|consen 342 CGFAFCRECKEAY 354 (446)
T ss_pred chhHhHHHHHhhh
Confidence 8999999999875
No 467
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.28 E-value=1.4e+02 Score=29.68 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=41.2
Q ss_pred CceeCcccccccCCCeecCC----CccccHHHHHHHHhc----CCCCCCCC-CCCCCCCCCcccHHHHHHHHHH
Q 009036 44 GEFLCPVSGSLMADPVVVSS----GHTFERACAHVCKTL----GFTPTLVD-GTTPDFSTVIPNLALKSTILNW 108 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~~~----G~ty~r~~i~~~~~~----~~~~cp~~-~~~~~~~~l~pn~~l~~~i~~~ 108 (546)
.-++|-+|.|=+.|--.+.| +|.||--|=.+.++. +.-.||-- +.++-. .-+|.-.+.--|...
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvg-S~vPWAFMQGEIatI 339 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVG-SNVPWAFMQGEIATI 339 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccC-CcccHHHhhhhHHHH
Confidence 45999999999999988876 799997776655543 22257631 112322 346765555555443
No 468
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=23.26 E-value=45 Score=20.29 Aligned_cols=15 Identities=13% Similarity=0.454 Sum_probs=11.4
Q ss_pred ceeCcccccccCCCe
Q 009036 45 EFLCPVSGSLMADPV 59 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV 59 (546)
.|.|++|...|.+.-
T Consensus 1 q~~C~~C~k~f~~~~ 15 (27)
T PF12171_consen 1 QFYCDACDKYFSSEN 15 (27)
T ss_dssp -CBBTTTTBBBSSHH
T ss_pred CCCcccCCCCcCCHH
Confidence 378999999888763
No 469
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.06 E-value=40 Score=33.47 Aligned_cols=27 Identities=11% Similarity=-0.053 Sum_probs=19.8
Q ss_pred cccHHHHHHHHhc------------CCCCCCCCCCCCCC
Q 009036 66 TFERACAHVCKTL------------GFTPTLVDGTTPDF 92 (546)
Q Consensus 66 ty~r~~i~~~~~~------------~~~~cp~~~~~~~~ 92 (546)
-.||+|+.+||-. |.+.||.|++..+-
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 3578999999842 45689999887543
No 470
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=22.98 E-value=1.6e+02 Score=27.88 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=37.1
Q ss_pred hHHHHHhcCChHHHHHHHccC---C---------------HHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhcc
Q 009036 302 NKMLIVRSGLVPPIVDVLMAG---S---------------AEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKS 362 (546)
Q Consensus 302 nk~~i~~~g~l~~Lv~lL~~~---~---------------~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~ 362 (546)
.+..+.+.|++..++.+|+.. . .++...+..+|..++... +|+..+... ++.++..+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHH
Confidence 344445667777777777632 1 356677888888887764 566666542 2222222222
Q ss_pred CCHHHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCc
Q 009036 363 DSERTQHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCS 421 (546)
Q Consensus 363 ~~~~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~ 421 (546)
.....-..++.+|..+-. +.+....+.+. .|..+++++....-...-+..|..||.+.
T Consensus 113 ~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~gr~~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 113 LQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHGRQPRYLDFLSSLCVCN 171 (207)
T ss_dssp CCH-TTHHHHHHHHHHHTT-----------------------------------------
T ss_pred hhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcCCChHHHHHHhhhcccC
Confidence 111100233445555444 33334444433 48888888876445566777888887754
No 471
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=22.95 E-value=72 Score=34.46 Aligned_cols=69 Identities=17% Similarity=0.120 Sum_probs=48.0
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 434 ECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 434 ~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
..+++.+.-+ .+++.++.|..++.+++...+..+..+..+..-..+++++....+++-+.|..+|..+-
T Consensus 330 ~~~lk~~~a~--~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 330 LKALKSLCAH--KNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHhcc--cChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 3444444333 46889999999999998765545555555555567788888888888777777777665
No 472
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.75 E-value=61 Score=27.35 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=23.1
Q ss_pred CCCceeCcccccc----cCCCeec-CCCccccHHHHHH
Q 009036 42 PPGEFLCPVSGSL----MADPVVV-SSGHTFERACAHV 74 (546)
Q Consensus 42 ~p~~~~CpI~~~~----m~dPV~~-~~G~ty~r~~i~~ 74 (546)
+-..-+||-|+.- =|||++- -||.+|-|+.++.
T Consensus 6 LGtKridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 6 LGTKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred ccccccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 3445678888764 4788886 5788887777643
No 473
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=22.64 E-value=69 Score=23.11 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=27.3
Q ss_pred CCceeCcccccccCCC-eecCCCccccHHHHHH
Q 009036 43 PGEFLCPVSGSLMADP-VVVSSGHTFERACAHV 74 (546)
Q Consensus 43 p~~~~CpI~~~~m~dP-V~~~~G~ty~r~~i~~ 74 (546)
++-|.|-.|...+.+. ....-|.-||+.|..+
T Consensus 24 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 56 (58)
T PF00412_consen 24 PECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQK 56 (58)
T ss_dssp TTTSBETTTTCBTTTSSEEEETTEEEEHHHHHH
T ss_pred ccccccCCCCCccCCCeeEeECCEEECHHHHhh
Confidence 5779999999999888 5678889999999865
No 474
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.57 E-value=48 Score=37.47 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=24.4
Q ss_pred eCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 47 LCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 47 ~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
.||-|+. .++.|..||..|= .-+ ...+||.|+.....
T Consensus 3 ~Cp~Cg~------~n~~~akFC~~CG-~~l--~~~~Cp~CG~~~~~ 39 (645)
T PRK14559 3 ICPQCQF------ENPNNNRFCQKCG-TSL--THKPCPQCGTEVPV 39 (645)
T ss_pred cCCCCCC------cCCCCCccccccC-CCC--CCCcCCCCCCCCCc
Confidence 5888887 3678888888881 111 12468888876543
No 475
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=22.34 E-value=5.2e+02 Score=28.90 Aligned_cols=101 Identities=13% Similarity=-0.036 Sum_probs=65.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHh--cCCh
Q 009036 235 KLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVR--SGLV 312 (546)
Q Consensus 235 ~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~--~g~l 312 (546)
...+-+...+..+...|+...+.-+.. +.+-.++...-.+|...+..++.....+|..|+....+...+.+ .-.-
T Consensus 283 Ry~Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk 359 (740)
T COG5537 283 RYIDVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFK 359 (740)
T ss_pred hccchhHHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 344445556666666666555443321 22222455566677778889999999999999987666554432 2356
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcc
Q 009036 313 PPIVDVLMAGSAEAQEHACGAIFSLA 338 (546)
Q Consensus 313 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls 338 (546)
..+++++..+..-+|..+...+..|.
T Consensus 360 ~rILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 360 DRILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHH
Confidence 77888888774448888888877663
No 476
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=22.27 E-value=8.6 Score=29.81 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=20.2
Q ss_pred ceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCC
Q 009036 45 EFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTP 90 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 90 (546)
+..||.|... +.-..|+-+|-.|-..+.. ..-||.|++++
T Consensus 1 e~~CP~C~~~----L~~~~~~~~C~~C~~~~~~--~a~CPdC~~~L 40 (70)
T PF07191_consen 1 ENTCPKCQQE----LEWQGGHYHCEACQKDYKK--EAFCPDCGQPL 40 (70)
T ss_dssp --B-SSS-SB----EEEETTEEEETTT--EEEE--EEE-TTT-SB-
T ss_pred CCcCCCCCCc----cEEeCCEEECcccccccee--cccCCCcccHH
Confidence 4679999875 3444589999888543211 22588887765
No 477
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.99 E-value=93 Score=32.17 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHhhc-CCchHHHHHhcCChHHHHH--HHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCC
Q 009036 288 NAVAALVNLSL-EKINKMLIVRSGLVPPIVD--VLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGA 352 (546)
Q Consensus 288 ~A~~~L~nLs~-~~~nk~~i~~~g~l~~Lv~--lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~ 352 (546)
+....|.+|+. +++++..+.+-|+++.++. ...+.+|-+++....++.+|..++ +|+..|+....
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~kme~ 443 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKMEP 443 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcCCc
No 478
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=21.47 E-value=84 Score=26.70 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=31.8
Q ss_pred HHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHH
Q 009036 329 HACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQ 368 (546)
Q Consensus 329 ~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~ 368 (546)
.....|..|+..++.-..+.+.|+++.|+.+|.++|.++.
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 3455667788888777777889999999999999876653
No 479
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=21.39 E-value=42 Score=32.12 Aligned_cols=17 Identities=41% Similarity=0.733 Sum_probs=14.7
Q ss_pred ceeCcccccccCCCeec
Q 009036 45 EFLCPVSGSLMADPVVV 61 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV~~ 61 (546)
-|.||+|+-+|..|+..
T Consensus 260 GfvCsVCLsvfc~p~~~ 276 (296)
T COG5242 260 GFVCSVCLSVFCRPVPV 276 (296)
T ss_pred eeehhhhheeecCCcCc
Confidence 47899999999999765
No 480
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=21.32 E-value=8.7e+02 Score=27.96 Aligned_cols=162 Identities=15% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCch
Q 009036 224 NSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-EKIN 302 (546)
Q Consensus 224 ~~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~n 302 (546)
......+.+...+..++...-...+..+..+..-.....+. ...-++.-.......-..+......+|..++. +++.
T Consensus 438 ~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~ 515 (727)
T PF12726_consen 438 ISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSH 515 (727)
T ss_pred hhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q ss_pred HHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036 303 KMLIV-RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 303 k~~i~-~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 381 (546)
...+. +.+....++.++-+++.++.+.|..+|.... ...|-.+.+-.+|+..-.........+|..+...
T Consensus 516 L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~---------d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 516 LKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAF---------DVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred HHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHh---------cCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q ss_pred chhHHHHHhcCcHHHHHHHHhC
Q 009036 382 KSNRTKLVKLGSVNALLGMVNS 403 (546)
Q Consensus 382 ~~n~~~iv~~Gav~~Lv~lL~~ 403 (546)
.. .+-.+.+++.+.+
T Consensus 587 ~~-------~~p~pr~vr~~~D 601 (727)
T PF12726_consen 587 KF-------FEPCPRMVRCLMD 601 (727)
T ss_pred hh-------hcchHHHHHHHHH
No 481
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=21.27 E-value=7.8e+02 Score=25.07 Aligned_cols=187 Identities=17% Similarity=0.069 Sum_probs=86.5
Q ss_pred CChHHHHHHHcc-CCHHHHHHHHHHHhhcc-cc-cchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh--
Q 009036 310 GLVPPIVDVLMA-GSAEAQEHACGAIFSLA-LD-DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN-- 384 (546)
Q Consensus 310 g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls-~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n-- 384 (546)
.++..|+.++.. ++......++.+|..-. .. .+ .....+..+.+-|++..+.+|+.-+..+..+.....|
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~-----~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSE-----LPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcC-----CCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 355666666664 46666666666665321 11 11 0122444555555555666777777776666541112
Q ss_pred HHHHHhcCcHHHHHHHHhCc----h--HH-HHHHHHHHHhh--C--CcccH-----HH--HHhCC----cHHHHHHHHcc
Q 009036 385 RTKLVKLGSVNALLGMVNSG----H--MT-GRVLLILGNLA--S--CSDGR-----VA--VLDSG----GVECLVGMLRK 442 (546)
Q Consensus 385 ~~~iv~~Gav~~Lv~lL~~~----~--~~-e~al~~L~nLa--~--~~e~r-----~~--i~~~g----~i~~Lv~lL~~ 442 (546)
...++. ..++.|++.+... - .+ ....++...++ . .+... .. ..+.. .-+.+...+.
T Consensus 97 ~~~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~- 174 (339)
T PF12074_consen 97 SLKFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA- 174 (339)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC-
Confidence 222222 3677777777541 1 11 11111111122 1 00000 00 00100 0011222211
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhhcCCc
Q 009036 443 GTELSESTQESCVSVLYALSHGGL-RFKGLAAAAGMAEVLMRMERVG--SEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 443 ~~~~s~~~~e~Av~~L~~L~~~~~-~~~~~~~~~g~v~~L~~ll~~~--s~~~k~~A~~lL~~L~~~~~ 508 (546)
+++.....+.+|..+..+.. ...... ....-..++.++-+. ...+|+.|..+|+.+.....
T Consensus 175 ----~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~ 238 (339)
T PF12074_consen 175 ----SEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNP 238 (339)
T ss_pred ----CHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCh
Confidence 24455666777766654321 111111 111335666666666 78899999999987765443
No 482
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=21.07 E-value=1.4e+03 Score=28.89 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=59.6
Q ss_pred CChHHHHH----HHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036 310 GLVPPIVD----VLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR 385 (546)
Q Consensus 310 g~l~~Lv~----lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~ 385 (546)
..++.++. +|++.++.++..+......+-...+. ..+..++..|+..+-+++..-...|+.+|..|+.. +.
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds---~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~--~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS---YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK--NP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--cH
Confidence 34555554 34567888887777666655433221 22334677888888777776668999999999863 23
Q ss_pred HHHHhc-CcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036 386 TKLVKL-GSVNALLGMVNSGH--MTGRVLLILGNLAS 419 (546)
Q Consensus 386 ~~iv~~-Gav~~Lv~lL~~~~--~~e~al~~L~nLa~ 419 (546)
..+... -.+..+++.+.+-+ -......+|..|+.
T Consensus 506 ~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~ 542 (1426)
T PF14631_consen 506 SELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAF 542 (1426)
T ss_dssp HHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 333332 33444444444322 23445677777764
No 483
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=20.83 E-value=3.4e+02 Score=23.35 Aligned_cols=104 Identities=24% Similarity=0.259 Sum_probs=59.2
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh--------hhhH-H----hhc--CChHHHHHHHHccCC----HHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE--------ETRV-S----LCT--PRLLLALRSLIISRY----TNVQV 287 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~--------~~r~-~----l~~--~g~i~~Lv~lL~s~~----~~v~~ 287 (546)
..++.+++.+++ ++....-.+..|..+..+-. ..|+ . +.+ ..++..+...+.... .++..
T Consensus 26 ~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 104 (148)
T PF08389_consen 26 DFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVK 104 (148)
T ss_dssp THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHH
T ss_pred hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 456788888765 45555556666665544311 1122 1 222 234555555554332 67778
Q ss_pred HHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHH
Q 009036 288 NAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAI 334 (546)
Q Consensus 288 ~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L 334 (546)
.++.++..... --.-..+.+...++.+..+|.+. +++..|+.+|
T Consensus 105 ~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 105 AALKCLKSWIS-WIPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 88888887665 33344455667889999988554 3366665543
No 484
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=20.79 E-value=74 Score=32.16 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=36.1
Q ss_pred CCCCCc-eeCcccccccCC----CeecCCC-----ccccHHHHHHHHhc-CCCCCCCCCCCCC
Q 009036 40 AEPPGE-FLCPVSGSLMAD----PVVVSSG-----HTFERACAHVCKTL-GFTPTLVDGTTPD 91 (546)
Q Consensus 40 ~~~p~~-~~CpI~~~~m~d----PV~~~~G-----~ty~r~~i~~~~~~-~~~~cp~~~~~~~ 91 (546)
.+.|.+ ..|-||...+.. |.+.+|- +..-|.|+++|+.. +...|..|.....
T Consensus 72 ~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 72 EESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred ccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 445544 899999986533 6777664 23459999999974 5557888876543
No 485
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=20.75 E-value=68 Score=26.19 Aligned_cols=20 Identities=10% Similarity=0.203 Sum_probs=16.5
Q ss_pred eecCCCccccHHHHHHHHhc
Q 009036 59 VVVSSGHTFERACAHVCKTL 78 (546)
Q Consensus 59 V~~~~G~ty~r~~i~~~~~~ 78 (546)
|+++.|+.|++.+|.+-+..
T Consensus 10 VtIp~G~KYdK~wLl~~iq~ 29 (88)
T PF09162_consen 10 VTIPYGKKYDKDWLLNSIQS 29 (88)
T ss_dssp EEETTGGGS-HHHHHHHHHH
T ss_pred EEecCCcccCHHHHHHHHHH
Confidence 78999999999999887653
No 486
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=20.55 E-value=30 Score=25.45 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=13.2
Q ss_pred CCceeCcccccccCCC
Q 009036 43 PGEFLCPVSGSLMADP 58 (546)
Q Consensus 43 p~~~~CpI~~~~m~dP 58 (546)
..-|.||-|+.+|+|.
T Consensus 15 E~~lrCPRC~~~FR~~ 30 (65)
T COG4049 15 EEFLRCPRCGMVFRRR 30 (65)
T ss_pred ceeeeCCchhHHHHHh
Confidence 4568899999999875
No 487
>PHA02862 5L protein; Provisional
Probab=20.51 E-value=74 Score=28.40 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=30.9
Q ss_pred eCcccccccCCCeecCCCc-----cccHHHHHHHHhc-CCCCCCCCCCCCCC
Q 009036 47 LCPVSGSLMADPVVVSSGH-----TFERACAHVCKTL-GFTPTLVDGTTPDF 92 (546)
Q Consensus 47 ~CpI~~~~m~dPV~~~~G~-----ty~r~~i~~~~~~-~~~~cp~~~~~~~~ 92 (546)
.|=||.+-=.|. .-||.. -.-++|+++|++. +...|+.|+.++..
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 488888865444 356543 2347899999975 45589999877543
No 488
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.49 E-value=43 Score=35.69 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=52.8
Q ss_pred CCCCCCCCceeCcccccccCCCeecCCC-ccccHHHHHHHHhc-CCCCCC--CCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009036 37 PQTAEPPGEFLCPVSGSLMADPVVVSSG-HTFERACAHVCKTL-GFTPTL--VDGTTPDFSTVIPNLALKSTILNWCHKQ 112 (546)
Q Consensus 37 ~~~~~~p~~~~CpI~~~~m~dPV~~~~G-~ty~r~~i~~~~~~-~~~~cp--~~~~~~~~~~l~pn~~l~~~i~~~~~~~ 112 (546)
......|+...||++..+...||+.++| -+++..++..-... +..+|. .+.......-+.||-++....-.|-..-
T Consensus 298 ~~~~~~~~~~~~p~~k~v~~~~~~~s~~~~~~~~~~~~~~s~d~~~p~~~~~~~~~~~~~~g~~~~~~~~sa~~~~~~~~ 377 (448)
T KOG0314|consen 298 SQRTQDPESLRCPPPKALSPTTSVASPGEKKPLPSNNNPTSTDPQFPEGAEITSGYDVSPPGFVPKPVDASAPWQGSSAV 377 (448)
T ss_pred ccccCCCccccCCcccccCCcccccCCCCcccCCcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Confidence 3345789999999999999999998665 58999998663332 333443 2444455556788887777776665443
No 489
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=20.41 E-value=2e+02 Score=29.08 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=40.7
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHHHhhcC---------------chhHHHHHhcCcHHHHHHHHhC
Q 009036 350 LGALPPLLHLLKSDSERTQHDSALALYHLSLV---------------KSNRTKLVKLGSVNALLGMVNS 403 (546)
Q Consensus 350 ~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~---------------~~n~~~iv~~Gav~~Lv~lL~~ 403 (546)
...+..++.-|...+...+..|+.+|..++.. ..|...+.+.|+++.|+++|..
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34566777777777777888888888888752 2467778888999999999863
No 490
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.22 E-value=5e+02 Score=31.97 Aligned_cols=143 Identities=12% Similarity=0.003 Sum_probs=75.2
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc--CChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCch
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT--PRLLLALRSLIISRYTNVQVNAVAALVNLSL-EKIN 302 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~--~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~n 302 (546)
.+.+++|-..|.+.+.++|.+|+..+..+..... .++.+ .......+.-+...+.+++..++...-+... ++..
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~---~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD---SQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch---hhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh
Confidence 3567888889999999999999999998876432 22222 3344555555566677777777666554332 2222
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036 303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHL 378 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L 378 (546)
.+.. +....+- ....++.++.....++... .....+-.+... .+..+.+.+++....+|+.|+.-|..|
T Consensus 335 ~~~~---~~~~~l~--~~~~D~~~rir~~v~i~~~-~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~Laql 403 (1266)
T KOG1525|consen 335 AKAS---TILLALR--ERDLDEDVRVRTQVVIVAC-DVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQL 403 (1266)
T ss_pred hhHH---HHHHHHH--hhcCChhhhheeeEEEEEe-ehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1111 0111111 1122333332222211111 111122222223 555555666667778888887766554
No 491
>PRK00420 hypothetical protein; Validated
Probab=20.08 E-value=33 Score=29.32 Aligned_cols=10 Identities=40% Similarity=0.746 Sum_probs=7.1
Q ss_pred eeCccccccc
Q 009036 46 FLCPVSGSLM 55 (546)
Q Consensus 46 ~~CpI~~~~m 55 (546)
-.||.|+..+
T Consensus 24 ~~CP~Cg~pL 33 (112)
T PRK00420 24 KHCPVCGLPL 33 (112)
T ss_pred CCCCCCCCcc
Confidence 4599998644
Done!