Query 009036
Match_columns 546
No_of_seqs 344 out of 2671
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 17:22:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 1.9E-29 6.5E-34 260.3 24.4 266 242-511 47-340 (354)
2 3l6x_A Catenin delta-1; cateni 100.0 3.1E-29 1.1E-33 272.4 26.9 294 225-528 46-400 (584)
3 1xm9_A Plakophilin 1; armadill 100.0 2.6E-29 9E-34 269.0 23.9 291 228-528 3-376 (457)
4 3nmz_A APC variant protein; pr 100.0 3.9E-28 1.3E-32 257.9 24.3 261 244-508 165-453 (458)
5 3now_A UNC-45 protein, SD10334 99.9 2.3E-26 7.9E-31 257.7 26.9 297 225-529 419-756 (810)
6 3nmz_A APC variant protein; pr 99.9 1.3E-26 4.3E-31 246.3 22.0 299 226-529 69-427 (458)
7 1xm9_A Plakophilin 1; armadill 99.9 4.4E-26 1.5E-30 243.9 26.0 280 226-507 43-451 (457)
8 3l6x_A Catenin delta-1; cateni 99.9 1.4E-25 4.7E-30 243.7 29.4 298 226-532 89-496 (584)
9 3ul1_B Importin subunit alpha- 99.9 1.5E-25 5.1E-30 243.2 26.8 297 225-528 98-406 (510)
10 3tpo_A Importin subunit alpha- 99.9 4E-25 1.4E-29 240.8 28.7 297 225-528 117-425 (529)
11 3nmw_A APC variant protein; AR 99.9 1.6E-25 5.5E-30 230.9 20.5 238 226-466 72-337 (354)
12 3ul1_B Importin subunit alpha- 99.9 3.8E-25 1.3E-29 239.9 24.6 294 227-528 57-363 (510)
13 4hxt_A De novo protein OR329; 99.9 4.7E-24 1.6E-28 207.8 25.9 240 269-511 2-247 (252)
14 4b8j_A Importin subunit alpha- 99.9 1.1E-23 3.8E-28 228.9 31.1 279 226-506 116-401 (528)
15 4hxt_A De novo protein OR329; 99.9 4.2E-24 1.4E-28 208.1 24.9 236 227-465 2-243 (252)
16 3now_A UNC-45 protein, SD10334 99.9 1.2E-24 4E-29 243.9 23.7 282 226-511 494-788 (810)
17 4b8j_A Importin subunit alpha- 99.9 7.2E-24 2.5E-28 230.4 29.3 295 226-528 73-376 (528)
18 4db8_A Armadillo-repeat protei 99.9 2E-24 6.8E-29 211.4 20.4 235 226-463 11-251 (252)
19 3tpo_A Importin subunit alpha- 99.9 1.1E-23 3.9E-28 229.3 28.3 300 226-528 161-473 (529)
20 1jdh_A Beta-catenin; beta-cate 99.9 3.1E-23 1.1E-27 224.5 27.6 300 225-528 15-360 (529)
21 1wa5_B Importin alpha subunit; 99.9 1.1E-22 3.6E-27 221.4 31.4 279 226-507 129-414 (530)
22 1wa5_B Importin alpha subunit; 99.9 6.8E-23 2.3E-27 222.9 29.5 295 226-528 86-388 (530)
23 4db8_A Armadillo-repeat protei 99.9 1.6E-23 5.6E-28 204.8 21.3 234 269-505 12-251 (252)
24 2z6h_A Catenin beta-1, beta-ca 99.9 1.5E-22 5.1E-27 225.6 29.1 282 225-507 12-338 (644)
25 2jdq_A Importin alpha-1 subuni 99.9 4.7E-22 1.6E-26 210.5 31.1 276 227-506 64-348 (450)
26 2jdq_A Importin alpha-1 subuni 99.9 1.3E-21 4.5E-26 207.1 28.6 279 226-508 106-393 (450)
27 3tt9_A Plakophilin-2; cell adh 99.9 1.6E-22 5.6E-27 195.4 18.2 193 227-420 8-230 (233)
28 1jdh_A Beta-catenin; beta-cate 99.9 1.1E-21 3.8E-26 212.2 26.0 294 226-528 100-402 (529)
29 3tt9_A Plakophilin-2; cell adh 99.9 1.8E-22 6E-27 195.2 14.6 194 270-464 9-230 (233)
30 2z6h_A Catenin beta-1, beta-ca 99.9 3.8E-21 1.3E-25 214.3 26.7 294 226-528 97-399 (644)
31 2z6g_A B-catenin; FULL-length, 99.9 3.8E-21 1.3E-25 218.7 26.8 281 226-507 149-474 (780)
32 2z6g_A B-catenin; FULL-length, 99.9 5.3E-21 1.8E-25 217.5 27.7 276 226-508 359-666 (780)
33 1wgm_A Ubiquitin conjugation f 99.9 1.6E-22 5.5E-27 168.7 8.5 79 37-116 14-93 (98)
34 4db6_A Armadillo repeat protei 99.9 1E-20 3.6E-25 179.7 21.1 195 226-420 11-210 (210)
35 3opb_A SWI5-dependent HO expre 99.9 1.8E-20 6.1E-25 206.6 23.8 284 226-512 375-735 (778)
36 2kre_A Ubiquitin conjugation f 99.9 3.8E-22 1.3E-26 167.0 7.3 75 39-114 23-97 (100)
37 2kr4_A Ubiquitin conjugation f 99.9 2.8E-22 9.7E-27 163.0 6.2 73 40-113 9-81 (85)
38 4db6_A Armadillo repeat protei 99.9 4.6E-20 1.6E-24 175.3 21.5 195 308-505 10-209 (210)
39 2f42_A STIP1 homology and U-bo 99.8 1.7E-21 6E-26 178.8 7.1 77 39-115 100-176 (179)
40 1t1h_A Gspef-atpub14, armadill 99.8 2.1E-20 7.1E-25 149.7 6.4 76 40-115 3-78 (78)
41 1xqr_A HSPBP1 protein; armadil 99.8 5.6E-18 1.9E-22 170.2 21.6 221 283-506 54-288 (296)
42 3opb_A SWI5-dependent HO expre 99.8 3.6E-18 1.2E-22 188.4 20.7 275 227-505 334-683 (778)
43 2c2l_A CHIP, carboxy terminus 99.8 1E-19 3.5E-24 181.7 6.2 78 38-115 201-278 (281)
44 2yu4_A E3 SUMO-protein ligase 99.8 2E-19 6.7E-24 149.2 5.8 76 41-116 3-87 (94)
45 1xqr_A HSPBP1 protein; armadil 99.8 3.7E-17 1.3E-21 164.2 23.1 234 227-462 28-286 (296)
46 3ztg_A E3 ubiquitin-protein li 99.7 1.4E-16 4.9E-21 131.4 8.4 76 39-114 7-85 (92)
47 2bay_A PRE-mRNA splicing facto 99.6 1.1E-16 3.6E-21 121.0 1.5 55 45-100 3-58 (61)
48 3m62_A Ubiquitin conjugation f 99.6 7.2E-16 2.4E-20 171.8 6.1 74 40-114 886-960 (968)
49 3grl_A General vesicular trans 99.6 2.5E-13 8.4E-18 146.4 23.6 282 226-511 20-348 (651)
50 3fl2_A E3 ubiquitin-protein li 99.5 4.2E-15 1.4E-19 129.7 6.1 71 41-111 48-119 (124)
51 3htk_C E3 SUMO-protein ligase 99.5 2.8E-15 9.7E-20 143.7 4.0 70 42-111 178-251 (267)
52 1z6u_A NP95-like ring finger p 99.5 7.1E-15 2.4E-19 132.3 5.0 69 42-110 75-144 (150)
53 2y43_A E3 ubiquitin-protein li 99.4 6.2E-14 2.1E-18 117.2 5.1 71 41-112 18-89 (99)
54 2ecw_A Tripartite motif-contai 99.4 2E-14 6.9E-19 116.4 2.0 66 40-105 14-84 (85)
55 2egp_A Tripartite motif-contai 99.4 7.9E-15 2.7E-19 117.2 -1.2 66 40-105 7-78 (79)
56 3l11_A E3 ubiquitin-protein li 99.4 3.2E-14 1.1E-18 122.4 2.5 69 41-109 11-86 (115)
57 2ckl_A Polycomb group ring fin 99.4 9.4E-14 3.2E-18 118.0 4.5 68 41-109 11-83 (108)
58 2ecy_A TNF receptor-associated 99.4 3.8E-13 1.3E-17 103.5 6.9 56 40-95 10-65 (66)
59 2ecv_A Tripartite motif-contai 99.4 3.6E-14 1.2E-18 114.9 1.1 66 40-105 14-84 (85)
60 3grl_A General vesicular trans 99.4 3.1E-11 1E-15 130.2 23.9 281 226-507 59-396 (651)
61 3lrq_A E3 ubiquitin-protein li 99.4 9.2E-14 3.2E-18 116.3 3.4 72 41-112 18-90 (100)
62 2yur_A Retinoblastoma-binding 99.4 2.7E-13 9.4E-18 106.8 5.7 60 39-98 9-71 (74)
63 1jm7_B BARD1, BRCA1-associated 99.4 1.2E-13 4.1E-18 119.2 3.2 69 41-112 18-87 (117)
64 2csy_A Zinc finger protein 183 99.4 2E-13 6.7E-18 109.7 4.3 65 40-106 10-74 (81)
65 3hct_A TNF receptor-associated 99.4 1.5E-13 5.3E-18 118.6 3.7 69 40-108 13-81 (118)
66 2ckl_B Ubiquitin ligase protei 99.4 2.1E-13 7.2E-18 125.0 3.8 70 41-110 50-121 (165)
67 2djb_A Polycomb group ring fin 99.4 9.4E-13 3.2E-17 103.2 6.7 59 39-98 9-68 (72)
68 2ysl_A Tripartite motif-contai 99.3 1.3E-12 4.5E-17 102.5 6.6 56 40-95 15-72 (73)
69 1jm7_A BRCA1, breast cancer ty 99.3 4.7E-13 1.6E-17 114.4 3.6 69 42-110 18-88 (112)
70 2ysj_A Tripartite motif-contai 99.3 1.9E-12 6.5E-17 98.5 6.0 47 40-86 15-63 (63)
71 4ayc_A E3 ubiquitin-protein li 99.3 1.3E-12 4.3E-17 116.1 4.2 64 43-109 51-114 (138)
72 1rmd_A RAG1; V(D)J recombinati 99.3 9.3E-13 3.2E-17 113.3 2.8 68 41-108 19-87 (116)
73 3hcs_A TNF receptor-associated 99.2 2.1E-12 7.2E-17 118.9 3.7 68 41-108 14-81 (170)
74 3knv_A TNF receptor-associated 99.2 8.8E-13 3E-17 117.3 1.1 67 41-107 27-102 (141)
75 1g25_A CDK-activating kinase a 99.2 3.9E-12 1.3E-16 97.5 4.4 55 44-98 2-61 (65)
76 1oyz_A Hypothetical protein YI 99.2 8.9E-10 3E-14 109.0 21.0 226 226-505 22-250 (280)
77 3ltm_A Alpha-REP4; protein eng 99.2 6E-10 2E-14 105.4 18.7 188 267-508 17-206 (211)
78 3ltm_A Alpha-REP4; protein eng 99.2 7.2E-10 2.5E-14 104.8 19.1 185 226-464 18-204 (211)
79 2ecj_A Tripartite motif-contai 99.2 1.3E-11 4.4E-16 92.1 5.4 47 40-86 10-58 (58)
80 3ltj_A Alpharep-4; protein eng 99.2 1.2E-09 4E-14 102.5 19.2 184 225-462 12-197 (201)
81 2ct2_A Tripartite motif protei 99.2 3.2E-11 1.1E-15 98.1 6.3 54 39-92 9-68 (88)
82 3ltj_A Alpharep-4; protein eng 99.2 1.5E-09 5.2E-14 101.7 18.8 184 268-505 13-198 (201)
83 2d8t_A Dactylidin, ring finger 99.2 1.8E-11 6.1E-16 95.5 4.2 51 41-92 11-61 (71)
84 3ng2_A RNF4, snurf, ring finge 99.1 1.5E-11 5E-16 95.9 3.1 58 41-99 6-70 (71)
85 1oyz_A Hypothetical protein YI 99.1 5.3E-09 1.8E-13 103.3 19.9 222 226-501 53-278 (280)
86 2ea6_A Ring finger protein 4; 99.1 8.7E-11 3E-15 90.8 4.5 52 40-92 10-68 (69)
87 2xeu_A Ring finger protein 4; 99.0 3.9E-11 1.3E-15 91.3 1.8 54 44-98 2-62 (64)
88 2ect_A Ring finger protein 126 99.0 1.9E-10 6.4E-15 91.4 5.2 58 40-98 10-70 (78)
89 1e4u_A Transcriptional repress 99.0 2.9E-10 9.8E-15 90.1 6.0 55 41-95 7-65 (78)
90 4fdd_A Transportin-1; heat rep 99.0 6E-09 2.1E-13 119.4 16.1 271 226-506 127-430 (852)
91 4gmo_A Putative uncharacterize 98.9 8.1E-09 2.8E-13 115.4 15.3 193 311-504 35-257 (684)
92 2ecn_A Ring finger protein 141 98.9 5.1E-10 1.7E-14 86.8 2.4 53 40-94 10-62 (70)
93 4fdd_A Transportin-1; heat rep 98.9 6.9E-09 2.4E-13 118.8 12.4 269 227-507 174-473 (852)
94 2ep4_A Ring finger protein 24; 98.9 2.7E-09 9.4E-14 83.6 5.8 52 40-92 10-64 (74)
95 4ap4_A E3 ubiquitin ligase RNF 98.9 7.5E-10 2.6E-14 97.0 2.8 55 43-98 5-66 (133)
96 1bor_A Transcription factor PM 98.9 5.4E-10 1.8E-14 82.7 1.5 46 43-92 4-49 (56)
97 1chc_A Equine herpes virus-1 r 98.8 1.9E-09 6.7E-14 82.9 3.7 47 44-91 4-51 (68)
98 2ecm_A Ring finger and CHY zin 98.8 2E-09 6.8E-14 79.1 3.4 47 44-91 4-54 (55)
99 1b3u_A Protein (protein phosph 98.8 2E-07 6.9E-12 101.1 20.9 263 227-504 87-352 (588)
100 1ibr_B P95, importin beta-1 su 98.8 4.3E-08 1.5E-12 103.1 14.6 273 226-508 127-440 (462)
101 1b3u_A Protein (protein phosph 98.8 2.5E-07 8.6E-12 100.3 20.1 263 227-504 164-430 (588)
102 2kiz_A E3 ubiquitin-protein li 98.8 8.1E-09 2.8E-13 79.7 5.9 51 41-92 10-63 (69)
103 1v87_A Deltex protein 2; ring- 98.7 8.3E-09 2.8E-13 88.1 5.0 51 42-92 22-94 (114)
104 2l0b_A E3 ubiquitin-protein li 98.7 8.5E-09 2.9E-13 84.3 4.8 50 42-92 37-89 (91)
105 1iym_A EL5; ring-H2 finger, ub 98.7 6.6E-09 2.3E-13 76.3 3.6 47 43-90 3-53 (55)
106 4gmo_A Putative uncharacterize 98.7 2.6E-08 8.9E-13 111.3 9.7 188 271-462 36-257 (684)
107 4ic3_A E3 ubiquitin-protein li 98.7 3.3E-09 1.1E-13 83.2 1.3 46 42-92 21-67 (74)
108 1x4j_A Ring finger protein 38; 98.7 1.4E-08 4.9E-13 79.7 4.2 49 43-92 21-72 (75)
109 2y1n_A E3 ubiquitin-protein li 98.6 8.3E-09 2.8E-13 105.3 3.0 48 45-92 332-379 (389)
110 2vgl_B AP-2 complex subunit be 98.6 2.4E-07 8.2E-12 101.8 14.7 265 227-507 121-421 (591)
111 2vgl_B AP-2 complex subunit be 98.6 3.5E-07 1.2E-11 100.4 14.0 257 227-506 49-312 (591)
112 1wim_A KIAA0161 protein; ring 98.6 1E-08 3.6E-13 84.3 1.0 66 44-110 4-83 (94)
113 2ecg_A Baculoviral IAP repeat- 98.5 2.3E-08 7.9E-13 78.6 2.5 46 42-92 22-68 (75)
114 4ap4_A E3 ubiquitin ligase RNF 98.5 1.5E-08 5.2E-13 88.6 0.9 57 42-99 69-132 (133)
115 2bpt_A Importin beta-1 subunit 98.4 2.3E-06 7.8E-11 97.3 15.4 265 228-507 370-670 (861)
116 1w63_A Adapter-related protein 98.4 1.7E-05 5.7E-10 87.5 21.7 250 227-506 142-415 (618)
117 1qgr_A Protein (importin beta 98.4 1.1E-05 3.9E-10 91.8 19.9 272 226-508 127-440 (876)
118 1u6g_C TIP120 protein, CAND1; 98.4 1.1E-06 3.8E-11 104.5 11.9 269 227-506 6-285 (1230)
119 1w63_A Adapter-related protein 98.4 1.5E-05 5.1E-10 87.9 20.1 249 228-507 108-381 (618)
120 1qgr_A Protein (importin beta 98.3 1.2E-05 4E-10 91.6 19.3 270 227-506 172-480 (876)
121 2qk2_A LP04448P; mini spindles 98.3 3.1E-06 1E-10 81.6 12.1 178 231-419 19-205 (242)
122 2ecl_A Ring-box protein 2; RNF 98.3 3E-07 1E-11 73.2 3.7 48 44-92 14-76 (81)
123 2bpt_A Importin beta-1 subunit 98.3 2.1E-05 7.2E-10 89.3 20.2 271 226-506 133-441 (861)
124 2vje_B MDM4 protein; proto-onc 98.3 3.8E-07 1.3E-11 68.9 3.1 47 44-91 6-55 (63)
125 1ibr_B P95, importin beta-1 su 98.3 6.1E-06 2.1E-10 86.5 13.3 269 230-507 93-397 (462)
126 2vje_A E3 ubiquitin-protein li 98.3 4.6E-07 1.6E-11 68.7 3.4 48 43-91 6-56 (64)
127 2yho_A E3 ubiquitin-protein li 98.3 1.7E-07 5.9E-12 74.3 0.9 46 42-92 15-61 (79)
128 3t6p_A Baculoviral IAP repeat- 98.2 2.1E-07 7.2E-12 94.5 0.5 46 42-92 292-338 (345)
129 2ea5_A Cell growth regulator w 98.2 1.6E-06 5.6E-11 66.4 5.2 46 42-92 12-58 (68)
130 3dpl_R Ring-box protein 1; ubi 98.1 1.8E-06 6.1E-11 72.3 4.4 45 45-90 37-99 (106)
131 3b2a_A TON_1937, putative unch 98.1 3.6E-05 1.2E-09 72.4 13.6 185 226-421 32-220 (265)
132 2qk1_A Protein STU2; STU2P, XM 98.1 2.2E-05 7.5E-10 76.3 12.9 186 232-419 21-220 (249)
133 3b2a_A TON_1937, putative unch 98.1 3.3E-05 1.1E-09 72.7 12.7 219 269-503 33-259 (265)
134 2vgl_A Adaptor protein complex 98.1 0.0002 6.9E-09 78.8 20.6 253 227-505 146-433 (621)
135 1u6g_C TIP120 protein, CAND1; 98.0 2.9E-05 9.8E-10 92.4 14.3 223 227-464 48-285 (1230)
136 2vgl_A Adaptor protein complex 98.0 0.00068 2.3E-08 74.6 23.1 257 227-506 74-399 (621)
137 1te4_A Conserved protein MTH18 98.0 6.4E-07 2.2E-11 78.0 -1.5 119 227-377 12-130 (131)
138 2db0_A 253AA long hypothetical 97.9 0.0013 4.3E-08 59.6 19.3 213 225-463 30-246 (253)
139 1te4_A Conserved protein MTH18 97.9 1.4E-06 4.7E-11 75.8 -0.4 118 268-416 11-130 (131)
140 2qk2_A LP04448P; mini spindles 97.9 0.00023 7.7E-09 68.4 15.1 183 312-507 17-207 (242)
141 1ho8_A Vacuolar ATP synthase s 97.8 0.00044 1.5E-08 72.2 17.4 232 273-505 171-476 (480)
142 2d8s_A Cellular modulator of i 97.8 1.8E-05 6.1E-10 62.6 4.9 50 43-92 13-70 (80)
143 3dad_A FH1/FH2 domain-containi 97.8 0.00026 9E-09 70.5 14.4 151 356-509 123-290 (339)
144 3dad_A FH1/FH2 domain-containi 97.8 0.00042 1.5E-08 69.0 14.8 154 227-380 118-286 (339)
145 4a0k_B E3 ubiquitin-protein li 97.7 4.4E-06 1.5E-10 71.0 0.0 45 46-91 49-111 (117)
146 2db0_A 253AA long hypothetical 97.6 0.011 3.6E-07 53.7 19.5 213 268-504 31-245 (253)
147 3tjz_B Coatomer subunit gamma; 97.4 0.0041 1.4E-07 63.2 17.3 246 228-508 69-319 (355)
148 4ady_A RPN2, 26S proteasome re 97.4 0.01 3.5E-07 67.2 22.0 201 269-506 472-677 (963)
149 2iw3_A Elongation factor 3A; a 97.3 0.0034 1.2E-07 71.7 17.0 264 227-511 14-286 (986)
150 2qk1_A Protein STU2; STU2P, XM 97.3 0.0023 7.8E-08 61.9 12.8 189 315-508 21-223 (249)
151 1ho8_A Vacuolar ATP synthase s 97.2 0.0098 3.4E-07 62.1 17.3 226 232-462 172-475 (480)
152 3tjz_B Coatomer subunit gamma; 97.0 0.036 1.2E-06 56.2 19.2 208 270-505 69-279 (355)
153 4ffb_C Protein STU2; tubulin f 96.9 0.024 8.1E-07 55.3 15.8 183 232-420 14-213 (278)
154 2iw3_A Elongation factor 3A; a 96.9 0.071 2.4E-06 61.0 21.5 221 228-462 96-323 (986)
155 4ady_A RPN2, 26S proteasome re 96.8 0.13 4.5E-06 58.3 22.5 238 227-509 392-645 (963)
156 3oc3_A Helicase MOT1, MOT1; re 96.8 0.0037 1.3E-07 65.9 9.1 239 228-501 175-432 (800)
157 2ct0_A Non-SMC element 1 homol 96.5 0.0029 9.8E-08 48.9 5.0 47 45-91 15-63 (74)
158 1vyx_A ORF K3, K3RING; zinc-bi 96.1 0.0073 2.5E-07 44.6 5.1 48 44-91 5-58 (60)
159 2jun_A Midline-1; B-BOX, TRIM, 96.1 0.0019 6.4E-08 53.2 2.0 32 44-75 2-36 (101)
160 1wa5_C Importin alpha RE-expor 96.1 0.055 1.9E-06 62.4 15.0 255 242-507 376-672 (960)
161 2of3_A ZYG-9; multifunctional 96.1 0.096 3.3E-06 50.8 14.1 175 230-417 49-234 (266)
162 3ebb_A Phospholipase A2-activa 96.0 0.16 5.5E-06 50.3 15.5 137 363-503 160-304 (304)
163 3vk6_A E3 ubiquitin-protein li 95.9 0.0056 1.9E-07 49.4 3.7 46 47-92 3-49 (101)
164 3ebb_A Phospholipase A2-activa 95.5 0.29 9.9E-06 48.4 15.3 183 270-456 104-299 (304)
165 3k1l_B Fancl; UBC, ring, RWD, 95.3 0.0023 7.8E-08 63.6 -0.8 48 44-91 307-372 (381)
166 3i2d_A E3 SUMO-protein ligase 94.7 0.019 6.5E-07 57.8 4.0 64 44-107 248-315 (371)
167 4ffb_C Protein STU2; tubulin f 94.2 0.76 2.6E-05 44.4 14.2 186 311-507 11-214 (278)
168 1wa5_C Importin alpha RE-expor 94.1 0.76 2.6E-05 52.8 16.4 214 238-461 416-668 (960)
169 2fv2_A RCD1 required for cell 93.7 0.47 1.6E-05 45.2 11.0 147 242-389 71-233 (268)
170 4fo9_A E3 SUMO-protein ligase 93.7 0.042 1.4E-06 55.2 3.9 64 44-107 214-281 (360)
171 1upk_A MO25 protein; transfera 93.7 2.1 7.2E-05 42.5 16.0 194 226-421 77-285 (341)
172 2f31_A Diaphanous protein homo 93.6 1.5 5.2E-05 41.4 14.6 110 231-341 4-127 (233)
173 2fv2_A RCD1 required for cell 93.4 3.3 0.00011 39.4 16.2 200 228-429 4-234 (268)
174 3eg5_B Protein diaphanous homo 93.3 2.5 8.6E-05 43.1 16.7 170 230-400 69-273 (383)
175 2of3_A ZYG-9; multifunctional 92.9 0.53 1.8E-05 45.5 10.3 135 235-380 95-236 (266)
176 2x1g_F Cadmus; transport prote 92.8 4.6 0.00016 46.1 20.0 133 322-463 476-615 (971)
177 2x1g_F Cadmus; transport prote 92.7 4.1 0.00014 46.6 19.3 210 281-505 476-722 (971)
178 1upk_A MO25 protein; transfera 92.1 10 0.00034 37.6 20.1 193 265-463 74-283 (341)
179 2bnx_A Diaphanous protein homo 90.7 4.1 0.00014 41.5 14.7 171 230-401 7-212 (386)
180 4hat_C Exportin-1; heat repeat 89.3 11 0.00038 43.5 18.4 219 223-463 12-263 (1023)
181 2x19_B Importin-13; nuclear tr 88.3 4.9 0.00017 45.8 14.6 153 237-401 459-621 (963)
182 3u0r_A Apoptosis inhibitor 5; 87.9 6.8 0.00023 40.8 13.6 99 227-337 29-127 (507)
183 3ibv_A Exportin-T; karyopherin 87.8 12 0.00042 42.9 17.4 218 225-463 4-260 (980)
184 2x19_B Importin-13; nuclear tr 87.5 9.5 0.00033 43.3 16.4 136 321-464 460-600 (963)
185 3m1i_C Exportin-1; heat repeat 87.1 12 0.00039 43.4 16.9 218 225-463 14-263 (1049)
186 4hat_C Exportin-1; heat repeat 86.0 4.5 0.00015 46.8 12.5 140 239-381 465-619 (1023)
187 3gjx_A Exportin-1; transport, 85.3 16 0.00054 42.4 16.5 218 223-463 24-275 (1073)
188 3nw0_A Non-structural maintena 84.7 0.88 3E-05 43.2 4.8 47 45-91 180-228 (238)
189 1x5b_A Signal transducing adap 83.4 3.6 0.00012 36.5 8.0 73 226-298 51-125 (163)
190 3ibv_A Exportin-T; karyopherin 82.7 12 0.0004 43.1 14.0 188 227-419 40-260 (980)
191 3l9t_A Putative uncharacterize 82.7 17 0.00057 34.2 12.5 136 227-383 70-210 (240)
192 1mhq_A ADP-ribosylation factor 82.3 3.9 0.00013 35.6 7.7 73 226-298 37-116 (148)
193 3qml_C Protein SLS1, nucleotid 82.2 9.6 0.00033 37.2 10.9 148 226-378 21-187 (315)
194 3eg5_B Protein diaphanous homo 82.0 24 0.00083 35.7 14.6 127 240-366 133-280 (383)
195 2f31_A Diaphanous protein homo 81.4 18 0.0006 33.9 12.5 128 240-367 67-215 (233)
196 3ldz_A STAM-1, signal transduc 81.3 4.3 0.00015 35.0 7.5 73 226-298 41-114 (140)
197 3oc3_A Helicase MOT1, MOT1; re 81.1 1 3.4E-05 47.9 3.8 138 227-379 263-403 (800)
198 1juq_A ADP-ribosylation factor 80.4 4.2 0.00014 36.4 7.3 73 226-298 49-128 (171)
199 3g2s_A C-terminal fragment of 79.0 6.7 0.00023 34.2 8.0 73 226-298 47-126 (149)
200 1lrv_A LRV, leucine-rich repea 79.0 1.9 6.7E-05 41.0 4.9 57 235-291 58-120 (244)
201 3mjh_B Early endosome antigen 78.0 0.4 1.4E-05 30.7 -0.2 17 44-60 4-20 (34)
202 3a6p_A Exportin-5; exportin-5, 77.8 40 0.0014 39.6 16.6 125 240-380 26-162 (1204)
203 1lsh_A Lipovitellin (LV-1N, LV 77.8 26 0.00088 40.6 14.8 163 270-464 392-577 (1056)
204 3u0r_A Apoptosis inhibitor 5; 77.7 15 0.00052 38.2 11.2 118 362-501 39-159 (507)
205 1lsh_A Lipovitellin (LV-1N, LV 76.6 52 0.0018 38.0 16.9 128 311-460 392-540 (1056)
206 3a6p_A Exportin-5; exportin-5, 74.5 50 0.0017 38.7 16.3 178 237-420 57-277 (1204)
207 3m1i_C Exportin-1; heat repeat 73.9 10 0.00035 43.8 10.1 101 238-340 464-570 (1049)
208 2jvx_A NF-kappa-B essential mo 73.5 1.1 3.6E-05 27.4 0.8 17 43-59 1-17 (28)
209 1weo_A Cellulose synthase, cat 73.2 7.2 0.00025 30.5 5.7 48 44-91 15-69 (93)
210 2bnx_A Diaphanous protein homo 73.1 53 0.0018 33.1 14.1 128 240-367 71-219 (386)
211 3c2g_A SYS-1 protein; beta-cat 73.0 28 0.00095 34.7 11.1 118 243-362 259-378 (619)
212 3zyq_A Hepatocyte growth facto 72.7 8.8 0.0003 35.9 7.5 73 226-298 44-118 (226)
213 1dvp_A HRS, hepatocyte growth 68.6 12 0.00041 34.7 7.5 73 226-298 41-115 (220)
214 3c2g_A SYS-1 protein; beta-cat 68.0 64 0.0022 32.2 12.5 110 293-403 266-378 (619)
215 3gjx_A Exportin-1; transport, 65.8 1.8E+02 0.0062 33.5 18.0 216 270-507 29-277 (1073)
216 1lrv_A LRV, leucine-rich repea 65.6 3.2 0.00011 39.5 2.8 84 232-333 103-193 (244)
217 1elk_A Target of MYB1; superhe 64.2 20 0.0007 31.3 7.6 73 226-298 52-130 (157)
218 3l9t_A Putative uncharacterize 64.0 34 0.0012 32.1 9.4 141 270-428 72-217 (240)
219 6rxn_A Rubredoxin; electron tr 58.1 2.9 0.0001 28.6 0.7 14 40-53 25-38 (46)
220 3zyq_A Hepatocyte growth facto 56.7 16 0.00054 34.1 5.9 71 269-339 45-118 (226)
221 3ldz_A STAM-1, signal transduc 56.6 25 0.00084 30.1 6.7 71 432-505 43-114 (140)
222 1e8j_A Rubredoxin; iron-sulfur 55.9 5.4 0.00019 28.1 1.9 15 39-53 30-44 (52)
223 1x5b_A Signal transducing adap 55.1 29 0.00099 30.5 7.0 71 432-505 53-125 (163)
224 1dvp_A HRS, hepatocyte growth 55.1 13 0.00044 34.5 4.9 70 269-338 42-114 (220)
225 3qml_C Protein SLS1, nucleotid 51.4 1.8E+02 0.0062 28.3 14.3 148 352-505 23-189 (315)
226 1vdy_A Hypothetical protein (R 51.2 23 0.00079 30.4 5.5 74 432-508 50-133 (140)
227 2kn9_A Rubredoxin; metalloprot 51.1 7.1 0.00024 30.2 2.0 16 39-54 54-69 (81)
228 3o2t_A Symplekin; heat repeat, 50.9 1.6E+02 0.0053 29.7 12.5 128 242-378 40-181 (386)
229 4rxn_A Rubredoxin; electron tr 49.9 5.5 0.00019 28.3 1.1 14 40-53 31-44 (54)
230 2o35_A Hypothetical protein DU 49.5 6.6 0.00022 31.3 1.5 12 67-78 43-54 (105)
231 3gae_A Protein DOA1; UFD3, CDC 49.4 29 0.00099 32.9 6.5 134 362-499 101-252 (253)
232 3fyb_A Protein of unknown func 48.7 6.9 0.00023 31.2 1.5 12 67-78 42-53 (104)
233 3g2s_A C-terminal fragment of 48.5 45 0.0015 28.8 7.0 71 432-505 49-126 (149)
234 3pst_A Protein DOA1; protein d 48.4 71 0.0024 32.6 9.5 136 275-421 234-391 (425)
235 1juq_A ADP-ribosylation factor 47.3 23 0.00079 31.4 5.1 71 269-339 50-128 (171)
236 1yk4_A Rubredoxin, RD; electro 47.2 6.5 0.00022 27.7 1.1 14 40-53 30-43 (52)
237 3gae_A Protein DOA1; UFD3, CDC 46.6 32 0.0011 32.6 6.3 137 272-419 59-217 (253)
238 1mhq_A ADP-ribosylation factor 46.2 36 0.0012 29.4 6.0 71 432-505 39-116 (148)
239 2v3b_B Rubredoxin 2, rubredoxi 46.0 6.7 0.00023 27.9 1.0 14 40-53 31-44 (55)
240 1dx8_A Rubredoxin; electron tr 41.7 8.2 0.00028 29.0 1.0 15 40-54 35-49 (70)
241 1s24_A Rubredoxin 2; electron 38.5 10 0.00034 29.8 1.1 14 40-53 63-76 (87)
242 3vhs_A ATPase wrnip1; zinc fin 36.4 10 0.00035 22.1 0.6 13 45-57 6-18 (29)
243 3gs3_A Symplekin, LD45768P; he 35.2 2.9E+02 0.0098 26.0 15.4 139 231-378 19-171 (257)
244 3pwf_A Rubrerythrin; non heme 34.9 22 0.00077 31.5 2.9 16 41-56 134-149 (170)
245 3l3f_X Protein DOA1, DOA1/UFD3 34.7 60 0.0021 32.5 6.3 133 276-419 172-326 (362)
246 3pst_A Protein DOA1; protein d 32.0 1.5E+02 0.0052 30.2 8.9 102 278-382 271-391 (425)
247 2cs3_A Protein C14ORF4, MY039 31.6 32 0.0011 26.2 2.8 36 43-78 13-52 (93)
248 2d8x_A Protein pinch; LIM doma 31.3 38 0.0013 24.6 3.3 35 43-77 29-64 (70)
249 3vld_A DNA mismatch repair pro 29.8 2.6E+02 0.009 29.0 10.2 92 229-326 118-212 (500)
250 2kkx_A Uncharacterized protein 29.0 52 0.0018 26.3 3.7 50 42-92 24-79 (102)
251 1elk_A Target of MYB1; superhe 28.6 1.3E+02 0.0043 26.1 6.7 72 432-505 54-130 (157)
252 1vdy_A Hypothetical protein (R 28.5 1E+02 0.0036 26.2 5.9 41 227-267 49-90 (140)
253 2dar_A PDZ and LIM domain prot 28.3 41 0.0014 25.9 3.2 25 47-71 27-51 (90)
254 2xqn_T Testin, TESS; metal-bin 28.0 43 0.0015 27.6 3.4 47 43-92 28-75 (126)
255 1x61_A Thyroid receptor intera 27.4 62 0.0021 23.4 3.9 36 43-78 31-67 (72)
256 2l4z_A DNA endonuclease RBBP8, 27.0 39 0.0013 28.0 3.0 28 45-72 61-89 (123)
257 1wig_A KIAA1808 protein; LIM d 26.5 23 0.00078 26.3 1.3 34 43-76 29-64 (73)
258 2d8z_A Four and A half LIM dom 26.5 47 0.0016 24.0 3.0 34 43-76 29-63 (70)
259 3gs3_A Symplekin, LD45768P; he 26.2 1.5E+02 0.0053 27.9 7.4 64 310-377 53-116 (257)
260 3d00_A Tungsten formylmethanof 26.0 21 0.0007 32.4 1.1 25 44-73 162-186 (191)
261 3o2t_A Symplekin; heat repeat, 25.8 3.8E+02 0.013 26.8 10.6 107 226-337 62-181 (386)
262 2jtn_A LIM domain-binding prot 25.5 66 0.0022 28.5 4.4 47 43-92 85-131 (182)
263 1nyp_A Pinch protein; LIM doma 25.2 37 0.0013 24.3 2.2 33 43-75 29-62 (66)
264 1x6a_A LIMK-2, LIM domain kina 24.7 59 0.002 24.3 3.4 35 43-77 39-76 (81)
265 4atg_A TAF6; transcription, TF 23.9 1.6E+02 0.0055 26.6 6.7 108 311-418 41-161 (196)
266 1m3v_A FLIN4, fusion of the LI 23.8 47 0.0016 27.3 2.8 51 43-94 30-83 (122)
267 3rru_A TOM1L1 protein; structu 23.4 1.3E+02 0.0043 26.0 5.7 74 226-299 52-131 (152)
268 2cur_A Skeletal muscle LIM-pro 23.4 62 0.0021 23.2 3.2 35 43-77 29-64 (69)
269 1rut_X Flinc4, fusion protein 23.4 27 0.00093 31.3 1.4 48 43-92 30-81 (188)
270 3l3f_X Protein DOA1, DOA1/UFD3 22.9 1.2E+02 0.0041 30.2 6.1 100 279-381 209-327 (362)
271 2xjy_A Rhombotin-2; oncoprotei 22.6 65 0.0022 26.6 3.6 49 43-92 27-78 (131)
272 2ct7_A Ring finger protein 31; 22.5 25 0.00084 27.3 0.8 32 44-75 23-61 (86)
273 2cup_A Skeletal muscle LIM-pro 20.4 84 0.0029 24.5 3.6 47 43-92 31-78 (101)
274 2gvi_A Conserved hypothetical 20.2 42 0.0014 30.7 1.9 31 43-73 170-201 (204)
275 1x64_A Alpha-actinin-2 associa 20.1 51 0.0017 25.3 2.2 30 43-72 23-52 (89)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.9e-29 Score=260.28 Aligned_cols=266 Identities=20% Similarity=0.211 Sum_probs=237.3
Q ss_pred HHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhcCC-chHHHHHhc
Q 009036 242 HEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-----------RYTNVQVNAVAALVNLSLEK-INKMLIVRS 309 (546)
Q Consensus 242 ~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-----------~~~~v~~~A~~~L~nLs~~~-~nk~~i~~~ 309 (546)
..+..|++.|.+++.+ +++|..+++.|+++.|+.+|.. .++.+|..|+++|.||+.+. .++..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3466899999999986 7899999999999999999952 24679999999999999875 478777654
Q ss_pred -CChHHHHHHHccCCHHHHHHHHHHHhhcccc--cchhhHHhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhc-Cchh
Q 009036 310 -GLVPPIVDVLMAGSAEAQEHACGAIFSLALD--DQNKTAIGVLGALPPLLHLL-KSDSERTQHDSALALYHLSL-VKSN 384 (546)
Q Consensus 310 -g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~-~~~n 384 (546)
|+|+.|+.+|+++++++++.|+++|.+|+.. +++|..|.+.|+++.|+++| ++++.++++.|+.+|+||+. .+++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 5699999999999999999999999999985 46899999999999999975 56789999999999999998 6789
Q ss_pred HHHHH-hcCcHHHHHHHHhCc------hHHHHHHHHHHHhhC----CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHH
Q 009036 385 RTKLV-KLGSVNALLGMVNSG------HMTGRVLLILGNLAS----CSDGRVAVLDSGGVECLVGMLRKGTELSESTQES 453 (546)
Q Consensus 385 ~~~iv-~~Gav~~Lv~lL~~~------~~~e~al~~L~nLa~----~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~ 453 (546)
+..++ ..|+++.|+++|.++ .+++.|+++|.||+. +++++..+++.|+++.|+++|.+ .+..+++.
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~ 282 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS---HSLTIVSN 282 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC---SCHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC---CChHHHHH
Confidence 99998 679999999999863 378999999999995 88999999999999999999998 46889999
Q ss_pred HHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcccc
Q 009036 454 CVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEE 511 (546)
Q Consensus 454 Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~ 511 (546)
|+++|++|+.++.+.+..+.+.|+++.|+.+++++++++++.|.++|++|+...+...
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999998777888889999999999999999999999999999999998755443
No 2
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=3.1e-29 Score=272.35 Aligned_cols=294 Identities=19% Similarity=0.198 Sum_probs=252.3
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC--Cch
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE--KIN 302 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~n 302 (546)
.+..++.||++|.+++.+.|..|+..|.+++..++.+|..+++.|+||.|+.+|.+++..+|+.|+++|.||+.. ++|
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999984 799
Q ss_pred HHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc------------------cC
Q 009036 303 KMLIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK------------------SD 363 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~------------------~~ 363 (546)
|..|++.|+|+.|+.+|++ .+.+++++|+.+|++|+..+++|..|.. ++++.|+++|. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccc
Confidence 9999999999999999997 5889999999999999999999999985 57999999872 12
Q ss_pred CHHHHHHHHHHHHHhhcCch-hHHHHHhc-CcHHHHHHHHhC--------chHHHHHHHHHHHhhCCcc-----------
Q 009036 364 SERTQHDSALALYHLSLVKS-NRTKLVKL-GSVNALLGMVNS--------GHMTGRVLLILGNLASCSD----------- 422 (546)
Q Consensus 364 ~~~~~~~A~~aL~~Ls~~~~-n~~~iv~~-Gav~~Lv~lL~~--------~~~~e~al~~L~nLa~~~e----------- 422 (546)
+..++++|+++|.||+...+ +|..|++. |+|+.|+.+|.+ ...++.|+.+|.||+...+
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 57899999999999999765 59999987 888899999974 1388999999999996521
Q ss_pred ---------------cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC----hhhHHHHHHCCcHHHHHH
Q 009036 423 ---------------GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG----LRFKGLAAAAGMAEVLMR 483 (546)
Q Consensus 423 ---------------~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~----~~~~~~~~~~g~v~~L~~ 483 (546)
|.+.+.+.++++.|+.+|..+ .++.++|+|+++|++||.+. ...+..+.+.|+++.|+.
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s--~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES--KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 222233345677889999764 45899999999999999864 234456667789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036 484 MERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS 528 (546)
Q Consensus 484 ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (546)
|+.++++.+++.|.++|++|+.... .+.+++.|++.++
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~~-------~~~~I~~g~ip~L 400 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDAR-------NKELIGKHAIPNL 400 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCS-------CHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChh-------HHHHHHhCCHHHH
Confidence 9999999999999999999998642 2455577887777
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=2.6e-29 Score=268.95 Aligned_cols=291 Identities=19% Similarity=0.226 Sum_probs=250.9
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLI 306 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i 306 (546)
.++.+++.|++++++.|..|+..|++++..++.++..+++.|+||.|+.+|.++++.++..|+++|.||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 478999999999999999999999999998888898999999999999999999999999999999999997 8999999
Q ss_pred HhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc--------cC--------CHHHHH
Q 009036 307 VRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK--------SD--------SERTQH 369 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~--------~~--------~~~~~~ 369 (546)
++.|+++.|+.+|+ ++++++++.|+++|.+|+..+++|..|.+ |+++.|+++|. +. +..+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999889999998 99999999993 22 456777
Q ss_pred HHHHHHHHhhcCchhHHHHHhc-CcHHHHHHHHhC--------chHHHHHHHHHHHhhCC--------------------
Q 009036 370 DSALALYHLSLVKSNRTKLVKL-GSVNALLGMVNS--------GHMTGRVLLILGNLASC-------------------- 420 (546)
Q Consensus 370 ~A~~aL~~Ls~~~~n~~~iv~~-Gav~~Lv~lL~~--------~~~~e~al~~L~nLa~~-------------------- 420 (546)
.|+++|+|||..++++..+++. |+++.|+.+|.+ ....+.|+.+|.||+..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998899999998 999999999974 23788999999999732
Q ss_pred -------------------------------cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChh--
Q 009036 421 -------------------------------SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLR-- 467 (546)
Q Consensus 421 -------------------------------~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~-- 467 (546)
+++.+.+.+.|+++.|+.+|..+ .++..++.|+++|++||.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~--~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS--KKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhc--CCHHHHHHHHHHHHHhccCcCcch
Confidence 12333445667889999999885 4589999999999999986532
Q ss_pred --h-HHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036 468 --F-KGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS 528 (546)
Q Consensus 468 --~-~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (546)
. +..+.+.|+++.|+.++.+++.++++.|.++|++|+... +...++..|+++++
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~-------~~~~~i~~~~i~~L 376 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-------LLHRVMGNQVFPEV 376 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG-------GGHHHHHHHTHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH-------HHHHHHHHhhhHHH
Confidence 2 345567899999999999999999999999999998742 23445555666655
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=3.9e-28 Score=257.94 Aligned_cols=261 Identities=20% Similarity=0.214 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhcCCc-hHHHHHh-cC
Q 009036 244 VEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-----------RYTNVQVNAVAALVNLSLEKI-NKMLIVR-SG 310 (546)
Q Consensus 244 ~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-----------~~~~v~~~A~~~L~nLs~~~~-nk~~i~~-~g 310 (546)
+..|++.|.+++.. +++|..+.+.|++++|+.+|.. .++.++.+|+++|.||+.++. ++..+.. .|
T Consensus 165 ~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 45899999999775 8999999999999999999952 346789999999999999754 6777754 45
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHhhcccc--cchhhHHhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhc-CchhHH
Q 009036 311 LVPPIVDVLMAGSAEAQEHACGAIFSLALD--DQNKTAIGVLGALPPLLHLL-KSDSERTQHDSALALYHLSL-VKSNRT 386 (546)
Q Consensus 311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~-~~~n~~ 386 (546)
+|+.|+.+|++++++++..|+++|.+|+.. +++|..|.+.|+++.|+++| .+++..+++.|+.+|+||+. .++++.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 699999999999999999999999999984 46899999999999999975 55788999999999999999 778999
Q ss_pred HHH-hcCcHHHHHHHHhCc------hHHHHHHHHHHHhhC----CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036 387 KLV-KLGSVNALLGMVNSG------HMTGRVLLILGNLAS----CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCV 455 (546)
Q Consensus 387 ~iv-~~Gav~~Lv~lL~~~------~~~e~al~~L~nLa~----~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av 455 (546)
.++ ..|+++.|+++|..+ .+++.|+++|.||+. +++++..+++.|+++.|+.+|.+ .+..+++.|+
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~---~~~~v~~~A~ 400 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS---HSLTIVSNAC 400 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC---SCHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC---CChHHHHHHH
Confidence 998 679999999999863 278999999999994 88899999999999999999998 4588999999
Q ss_pred HHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 456 SVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 456 ~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
++|++|+.++.+.+..+.+.|+++.|+.++.++++++++.|.++|++|....+
T Consensus 401 ~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999998777888888999999999999999999999999999999997654
No 5
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=2.3e-26 Score=257.71 Aligned_cols=297 Identities=18% Similarity=0.186 Sum_probs=256.7
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-----------------------------hhh---HHhhcCChHH
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-----------------------------ETR---VSLCTPRLLL 272 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-----------------------------~~r---~~l~~~g~i~ 272 (546)
+.+.++.|+..|++.+...+..|++.|.+++...+ ..+ +.+++.|++|
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 35789999999999999999999999999998542 122 6788999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh---h
Q 009036 273 ALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG---V 349 (546)
Q Consensus 273 ~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~---~ 349 (546)
.|+.+|.++++.+|+.|+++|.||+.+++++..+++.|++++|+.+|.++++..+..|+++|.+|+...+....+. .
T Consensus 499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 9999999999999999999999999988899999999999999999999999999999999999987655443332 2
Q ss_pred cCChHHHHHhhccC-CHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHH
Q 009036 350 LGALPPLLHLLKSD-SERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRV 425 (546)
Q Consensus 350 ~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~ 425 (546)
.|++++|+.+|.++ +...+..|+++|.||+.. ++++..+++.|+++.|+.+|.+.+ +++.|+.+|.||+.+++.+.
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 46999999999875 445567899999999986 578999999999999999998754 99999999999999999999
Q ss_pred HHHh-CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH-CCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009036 426 AVLD-SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAA-AGMAEVLMRMERVGSEHVKEKAKRMLELM 503 (546)
Q Consensus 426 ~i~~-~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~-~g~v~~L~~ll~~~s~~~k~~A~~lL~~L 503 (546)
.+++ .|+++.|+.++.. .+..+++.|+++|++|+.+++...+.+.+ .|+++.|+.|+.+++.++++.|.++|.+|
T Consensus 659 ~~v~~~g~l~~Lv~LL~s---~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL 735 (810)
T 3now_A 659 MFEGNNDRVKFLALLCED---EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNM 735 (810)
T ss_dssp HHHSSSSHHHHHHHGGGC---SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHhcC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 9986 7899999999988 46899999999999999865555555555 89999999999999999999999999999
Q ss_pred hcCCccccccCChHHHHhcCCccccc
Q 009036 504 KGRAEEEEEGVDWDELLDSGLVSRSR 529 (546)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (546)
..... ..-..+.+.|++..+.
T Consensus 736 ~~~s~-----e~~~~l~e~G~i~~L~ 756 (810)
T 3now_A 736 INAGE-----EIAKKLFETDIMELLS 756 (810)
T ss_dssp HTTCH-----HHHHHHHTSTHHHHHT
T ss_pred HhCCH-----HHHHHHHHCCCHHHHH
Confidence 87432 1236677778777664
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=246.32 Aligned_cols=299 Identities=22% Similarity=0.232 Sum_probs=249.5
Q ss_pred chhHHHHHHhcCC------------CCHHHHHHHHHHHHHHhccChhhhHHhhcCChH----------HHHHHHHccCC-
Q 009036 226 NEQEDYFVQKLKS------------PQVHEVEEALISLRKLTRSREETRVSLCTPRLL----------LALRSLIISRY- 282 (546)
Q Consensus 226 ~~~i~~lv~~L~s------------~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i----------~~Lv~lL~s~~- 282 (546)
.+.++.||+.|+. ++.+.|.+|+++|.+++...++......+.|++ +.++.++.+..
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 4678899999975 337999999999999999888777777777777 56666666542
Q ss_pred -HH-----HHH-------HHHHHHHHhhcCCchHHHHHhcCChHHHHHHHcc-----------CCHHHHHHHHHHHhhcc
Q 009036 283 -TN-----VQV-------NAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMA-----------GSAEAQEHACGAIFSLA 338 (546)
Q Consensus 283 -~~-----v~~-------~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~-----------~~~~~~~~Aa~~L~~Ls 338 (546)
.+ +++ .|+++|.|++.++++|..|.+.|++++|+.+|.. .++.++.+|+++|.+|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 12 433 8999999999999999999999999999999952 24778999999999999
Q ss_pred cccc-hhhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCcHHHHHHHHhC-c--hHHHHHH
Q 009036 339 LDDQ-NKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHLSLV--KSNRTKLVKLGSVNALLGMVNS-G--HMTGRVL 411 (546)
Q Consensus 339 ~~~~-~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~--~~n~~~iv~~Gav~~Lv~lL~~-~--~~~e~al 411 (546)
..++ ++..+.. .|+|+.|+.+|++++++++..|+++|.||+.. .+++..+++.|+|+.|+++|.. + .+++.++
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 8765 6777754 56799999999999999999999999999984 5789999999999999998643 3 4889999
Q ss_pred HHHHHhhC-CcccHHHHH-hCCcHHHHHHHHccCCCC-CHHHHHHHHHHHHHHhc---CChhhHHHHHHCCcHHHHHHHH
Q 009036 412 LILGNLAS-CSDGRVAVL-DSGGVECLVGMLRKGTEL-SESTQESCVSVLYALSH---GGLRFKGLAAAAGMAEVLMRME 485 (546)
Q Consensus 412 ~~L~nLa~-~~e~r~~i~-~~g~i~~Lv~lL~~~~~~-s~~~~e~Av~~L~~L~~---~~~~~~~~~~~~g~v~~L~~ll 485 (546)
.+|+||+. +++++..++ ..|+++.|+++|...... ...+++.|+++|.+|+. .++..++.+.+.|+++.|+.++
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 99999998 888999998 699999999999875311 11589999999999997 6778888899999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCccccc
Q 009036 486 RVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRSR 529 (546)
Q Consensus 486 ~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (546)
.+++..+++.|.++|.+|+... ...-+.+.+.|++..+.
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~~~-----~~~~~~i~~~G~I~~Lv 427 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSARN-----PKDQEALWDMGAVSMLK 427 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHSSC-----HHHHHHHHHHTHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHcCC-----HHHHHHHHHCCCHHHHH
Confidence 9999999999999999998542 11235577888877764
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=4.4e-26 Score=243.92 Aligned_cols=280 Identities=18% Similarity=0.151 Sum_probs=240.5
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcCCchHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLEKINKM 304 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~nk~ 304 (546)
.+.++.|++.|++++.+.|..|++.|++|+..++++|..+++.|+||.|+.+|. +++.++++.|+++|.||+.++++|.
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~ 122 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence 478999999999999999999999999999988999999999999999999999 8899999999999999999999999
Q ss_pred HHHhcCChHHHHHHHc--------cC--------CHHHHHHHHHHHhhcccccchhhHHhhc-CChHHHHHhhcc-----
Q 009036 305 LIVRSGLVPPIVDVLM--------AG--------SAEAQEHACGAIFSLALDDQNKTAIGVL-GALPPLLHLLKS----- 362 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~--------~~--------~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~l~~Lv~lL~~----- 362 (546)
.+++ |+++.|+.+|. +. +.++..+|+++|.+|+..++++..+.+. |+++.|+.+|++
T Consensus 123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 201 (457)
T 1xm9_A 123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS 201 (457)
T ss_dssp HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHT
T ss_pred HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhcccc
Confidence 9999 99999999993 22 4566679999999999988888888886 999999988763
Q ss_pred --------------------------------------------------------------------------------
Q 009036 363 -------------------------------------------------------------------------------- 362 (546)
Q Consensus 363 -------------------------------------------------------------------------------- 362 (546)
T Consensus 202 ~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (457)
T 1xm9_A 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH 281 (457)
T ss_dssp CTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGS
T ss_pred CCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhC
Confidence
Q ss_pred --------------CCHHHHHHHHHHHHHhhcCch-----hHHHHH-hcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC
Q 009036 363 --------------DSERTQHDSALALYHLSLVKS-----NRTKLV-KLGSVNALLGMVNSGH--MTGRVLLILGNLASC 420 (546)
Q Consensus 363 --------------~~~~~~~~A~~aL~~Ls~~~~-----n~~~iv-~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~ 420 (546)
+++.+++.|+++|.||+.... +.+.++ +.|+++.|+++|.+++ ++..|+++|.||+.+
T Consensus 282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 124556678899999987432 213344 5799999999998865 899999999999998
Q ss_pred cccHHHHHhCCcHHHHHHHHccCCC---CCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC-CHHHHHHH
Q 009036 421 SDGRVAVLDSGGVECLVGMLRKGTE---LSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG-SEHVKEKA 496 (546)
Q Consensus 421 ~e~r~~i~~~g~i~~Lv~lL~~~~~---~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~-s~~~k~~A 496 (546)
++.+..+. .|+++.|+++|....+ .++++...++.+|.++..++......+.+.|+++.|+.++.++ +++++++|
T Consensus 362 ~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A 440 (457)
T 1xm9_A 362 PLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440 (457)
T ss_dssp GGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHH
Confidence 88877665 4799999999998532 1246778899999999987778888888999999999999999 99999999
Q ss_pred HHHHHHhhcCC
Q 009036 497 KRMLELMKGRA 507 (546)
Q Consensus 497 ~~lL~~L~~~~ 507 (546)
..+|..+..+.
T Consensus 441 ~~~L~~~~~~~ 451 (457)
T 1xm9_A 441 RLLLSDMWSSK 451 (457)
T ss_dssp HHHHHTTSSST
T ss_pred HHHHHHHHcch
Confidence 99999998654
No 8
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.94 E-value=1.4e-25 Score=243.72 Aligned_cols=298 Identities=18% Similarity=0.184 Sum_probs=243.7
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRS-REETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINK 303 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk 303 (546)
.++++.||+.|++++.++|..|+..|++|+.. ++++|..+++.|+|+.|+.+|.+ .+.++++.|+.+|.||+.++++|
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 47899999999999999999999999999985 68999999999999999999997 68899999999999999999999
Q ss_pred HHHHhcCChHHHHHHHc------------------cCCHHHHHHHHHHHhhcccccc-hhhHHhh-cCChHHHHHhhcc-
Q 009036 304 MLIVRSGLVPPIVDVLM------------------AGSAEAQEHACGAIFSLALDDQ-NKTAIGV-LGALPPLLHLLKS- 362 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL~------------------~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~-~g~l~~Lv~lL~~- 362 (546)
..|++ ++++.|+.+|. ..+.+++.+|+++|.||+..++ ++..|.+ .|+++.|+.+|++
T Consensus 169 ~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE 247 (584)
T ss_dssp HHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99996 57999999772 1257999999999999998764 4777766 4555666666542
Q ss_pred -------------------------------------------------------------------------CCHHHHH
Q 009036 363 -------------------------------------------------------------------------DSERTQH 369 (546)
Q Consensus 363 -------------------------------------------------------------------------~~~~~~~ 369 (546)
.++.+++
T Consensus 248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E 327 (584)
T 3l6x_A 248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327 (584)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence 2344556
Q ss_pred HHHHHHHHhhcCc-----hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHcc
Q 009036 370 DSALALYHLSLVK-----SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRK 442 (546)
Q Consensus 370 ~A~~aL~~Ls~~~-----~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~ 442 (546)
.|+++|.|||... .++..+.+.|+++.|+++|..++ +++.|+++|.||+.+..++..| ..|+++.||.+|..
T Consensus 328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~ 406 (584)
T 3l6x_A 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPG 406 (584)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcC
Confidence 6667777776532 22333344589999999998754 8999999999999999888766 67899999999988
Q ss_pred CCC-----CCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhhcCCccccccCC
Q 009036 443 GTE-----LSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG--SEHVKEKAKRMLELMKGRAEEEEEGVD 515 (546)
Q Consensus 443 ~~~-----~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~--s~~~k~~A~~lL~~L~~~~~~~~~~~~ 515 (546)
+.. .+.++...|+.+|.+|+..+....+.+.+.|+++.|+.++.++ ++.+++.|..+|..|..+. +
T Consensus 407 ~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~-------e 479 (584)
T 3l6x_A 407 GQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK-------E 479 (584)
T ss_dssp SSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH-------H
T ss_pred CcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH-------H
Confidence 521 1467889999999999998888888999999999999999987 8999999999999998765 3
Q ss_pred hHHHHhcCCcccccccc
Q 009036 516 WDELLDSGLVSRSRFRL 532 (546)
Q Consensus 516 ~~~~~~~~~~~~~~~~~ 532 (546)
....++.-+.....|-.
T Consensus 480 lr~~~kk~G~~~~~f~~ 496 (584)
T 3l6x_A 480 LRKPLEKEGWKKSDFQV 496 (584)
T ss_dssp HHHHHHTTTCCGGGGCC
T ss_pred HHHHHHHcCCCHHHhcc
Confidence 44555555666665543
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=1.5e-25 Score=243.16 Aligned_cols=297 Identities=17% Similarity=0.206 Sum_probs=254.0
Q ss_pred CchhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cch
Q 009036 225 SNEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KIN 302 (546)
Q Consensus 225 ~~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~n 302 (546)
..+.++.||+.|+ +++++.|..|++.|.+++..+++++..+++.|+||.|+.+|.+++.++++.|+++|.||+.+ +.+
T Consensus 98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3578999999996 45689999999999999999999999999999999999999999999999999999999986 677
Q ss_pred HHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHhhcccccchh-hHHhhcCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036 303 KMLIVRSGLVPPIVDVLMAG-----SAEAQEHACGAIFSLALDDQNK-TAIGVLGALPPLLHLLKSDSERTQHDSALALY 376 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~ 376 (546)
+..+.+.|+++.|+.+|... ...++..++++|.+++...... ......++++.|+.+|.+++.+++..|+++|.
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88899999999999999865 3567889999999999876543 33344689999999999999999999999999
Q ss_pred HhhcCchhH-HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHH
Q 009036 377 HLSLVKSNR-TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQE 452 (546)
Q Consensus 377 ~Ls~~~~n~-~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e 452 (546)
+|+....++ ..+++.|+++.|+.+|.+.+ ++..++.+|.||+.. ++.+..+++.|+++.|+.+|.+ .+..+++
T Consensus 258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~v~~ 334 (510)
T 3ul1_B 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQK 334 (510)
T ss_dssp HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC---SSHHHHH
T ss_pred HHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC---CCHHHHH
Confidence 999876554 55567799999999998755 889999999999865 4567778899999999999987 4689999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036 453 SCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS 528 (546)
Q Consensus 453 ~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (546)
.|+++|.+|+.++......+.+.|+++.|+.++.+++..+|+.|.++|.+|+.....+. ...+.+.|++..+
T Consensus 335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~----~~~L~~~g~i~~L 406 (510)
T 3ul1_B 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ----IVYLVHCGIIEPL 406 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHH----HHHHHHCCCHHHH
Confidence 99999999999888888889999999999999999999999999999999987543221 2334555555443
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=4e-25 Score=240.79 Aligned_cols=297 Identities=17% Similarity=0.192 Sum_probs=255.9
Q ss_pred CchhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cch
Q 009036 225 SNEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KIN 302 (546)
Q Consensus 225 ~~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~n 302 (546)
..+.++.||+.|+ +.+++.|..|++.|.+++..++.++..+++.|+||.|+.+|.+++.++++.|+++|.||+.+ +.+
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence 3578999999995 55689999999999999999999999999999999999999999999999999999999986 688
Q ss_pred HHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHhhcccccchh-hHHhhcCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036 303 KMLIVRSGLVPPIVDVLMAG-----SAEAQEHACGAIFSLALDDQNK-TAIGVLGALPPLLHLLKSDSERTQHDSALALY 376 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~ 376 (546)
+..+.+.|+++.|+.+|... ...+...++++|.+++...... ......++++.|+.+|.+++++++..|+++|.
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999865 3567889999999999876543 33344689999999999999999999999999
Q ss_pred HhhcCchh-HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHH
Q 009036 377 HLSLVKSN-RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQE 452 (546)
Q Consensus 377 ~Ls~~~~n-~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e 452 (546)
+|+....+ ...++..|+++.|+.+|.+.+ ++..++.+|.||+.. ++.+..+++.|+++.|+.+|.+ .++.++.
T Consensus 277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~i~~ 353 (529)
T 3tpo_A 277 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQK 353 (529)
T ss_dssp HHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC---SSHHHHH
T ss_pred HhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC---CCHHHHH
Confidence 99986655 455667799999999998765 889999999999864 5567778899999999999987 4688999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036 453 SCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS 528 (546)
Q Consensus 453 ~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (546)
.|+++|.+|+.++......+.+.|+++.|+.++.+++..+++.|.++|.+|+.....+ ....+.+.|++..+
T Consensus 354 ~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~----~~~~l~~~g~i~~L 425 (529)
T 3tpo_A 354 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVE----QIVYLVHCGIIEPL 425 (529)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH----HHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHH----HHHHHHHCcCHHHH
Confidence 9999999999988888888899999999999999999999999999999998654222 12335556655544
No 11
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.93 E-value=1.6e-25 Score=230.94 Aligned_cols=238 Identities=20% Similarity=0.176 Sum_probs=211.5
Q ss_pred chhHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhccChhhhHHhhc-CChHHHHHHHHccCCHHHHHHHHHHH
Q 009036 226 NEQEDYFVQKLKS-----------PQVHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIISRYTNVQVNAVAAL 293 (546)
Q Consensus 226 ~~~i~~lv~~L~s-----------~~~~~~~~Al~~L~~La~~~~~~r~~l~~-~g~i~~Lv~lL~s~~~~v~~~A~~~L 293 (546)
.++++.|+..|.+ .+.+.|..|++.|.+|+..++.+|..+.. .|+||.|+.+|.+++.++++.|+++|
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 151 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence 5778889988842 24678999999999999988889988865 56699999999999999999999999
Q ss_pred HHhhcC--CchHHHHHhcCChHHHHHHH-ccCCHHHHHHHHHHHhhccc-ccchhhHHh-hcCChHHHHHhhccCCH---
Q 009036 294 VNLSLE--KINKMLIVRSGLVPPIVDVL-MAGSAEAQEHACGAIFSLAL-DDQNKTAIG-VLGALPPLLHLLKSDSE--- 365 (546)
Q Consensus 294 ~nLs~~--~~nk~~i~~~g~l~~Lv~lL-~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~-~~g~l~~Lv~lL~~~~~--- 365 (546)
.||+.. +++|..|++.|+|+.|+.+| ++++.++++.|+.+|++|+. .+++|..|. ..|+++.|+++|.+++.
T Consensus 152 ~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~ 231 (354)
T 3nmw_A 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231 (354)
T ss_dssp HHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC
T ss_pred HHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc
Confidence 999984 57899999999999999975 56789999999999999998 557888887 68999999999987644
Q ss_pred -HHHHHHHHHHHHhhc----CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhh-CCcccHHHHHhCCcHHHHH
Q 009036 366 -RTQHDSALALYHLSL----VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLA-SCSDGRVAVLDSGGVECLV 437 (546)
Q Consensus 366 -~~~~~A~~aL~~Ls~----~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa-~~~e~r~~i~~~g~i~~Lv 437 (546)
++++.|+++|.||+. .++++..+++.|+++.|+++|.+++ +++.|+++|.||+ .+++++..+++.|+|+.|+
T Consensus 232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv 311 (354)
T 3nmw_A 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 311 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence 589999999999996 7889999999999999999998765 8999999999999 5788999999999999999
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHHhcCCh
Q 009036 438 GMLRKGTELSESTQESCVSVLYALSHGGL 466 (546)
Q Consensus 438 ~lL~~~~~~s~~~~e~Av~~L~~L~~~~~ 466 (546)
++|.+ .+..+++.|+.+|.+|+.+.+
T Consensus 312 ~LL~s---~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 312 NLIHS---KHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp TTTTC---SSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhC---CCHHHHHHHHHHHHHHHcCCH
Confidence 99988 468999999999999998653
No 12
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.93 E-value=3.8e-25 Score=239.93 Aligned_cols=294 Identities=17% Similarity=0.193 Sum_probs=249.4
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcC-CchH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLT-RSREETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLE-KINK 303 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La-~~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~-~~nk 303 (546)
..++.+|+.|++++.+.|.+|+..++.+. ++...-...+++.|+||.|+.+|.. +++.+|..|+++|.||+.. ++++
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 45899999999999999999999999854 4443456788999999999999975 5689999999999999875 6788
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccC-----CHHHHHHHHHHHHH
Q 009036 304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSD-----SERTQHDSALALYH 377 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~-----~~~~~~~A~~aL~~ 377 (546)
..+++.|+|+.|+.+|++++.++++.|+++|.+|+.+. +.+..+.+.|+++.|+.+|... ....++.++++|.+
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999875 5688888999999999999864 34577899999999
Q ss_pred hhcCchhHHHHHh-cCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccH-HHHHhCCcHHHHHHHHccCCCCCHHHHHH
Q 009036 378 LSLVKSNRTKLVK-LGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGR-VAVLDSGGVECLVGMLRKGTELSESTQES 453 (546)
Q Consensus 378 Ls~~~~n~~~iv~-~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r-~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~ 453 (546)
++........+.. .|+++.|+.+|.+.+ ++..++.+|.+|+.....+ ..+.+.|+++.|+.+|.+ .+..++..
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~ 293 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA---TELPIVTP 293 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC---SCHHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC---CChhhhhH
Confidence 9987655444443 489999999998754 8899999999999876655 455689999999999998 46899999
Q ss_pred HHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036 454 CVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS 528 (546)
Q Consensus 454 Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (546)
|+.+|.+++.+++.....+.+.|+++.|+.++.++++.+++.|.++|.+|+....+ ..+.+.+.|++...
T Consensus 294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~-----~~~~v~~~g~i~~L 363 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD-----QIQQVVNHGLVPFL 363 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH-----HHHHHHHTTHHHHH
T ss_pred HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH-----HHHHHHhcCCHHHH
Confidence 99999999998888888889999999999999999999999999999999875432 22345555555443
No 13
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=4.7e-24 Score=207.76 Aligned_cols=240 Identities=26% Similarity=0.298 Sum_probs=220.3
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC-chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhhH
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEK-INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTA 346 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~ 346 (546)
|.|+.|+.+|.+++++++..|+.+|.+++... +++..+.+.|+++.|+.+|++++.+++..|+.+|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67999999999999999999999999999865 5899999999999999999999999999999999999988 677888
Q ss_pred HhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh-cCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCc-c
Q 009036 347 IGVLGALPPLLHLLKSDSERTQHDSALALYHLS-LVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCS-D 422 (546)
Q Consensus 347 i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls-~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~-e 422 (546)
+.+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+++.|+++.|++++.+.+ ++..++.+|.||+... +
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 899999999999999999999999999999999 46788999999999999999998754 8999999999999854 4
Q ss_pred cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009036 423 GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLEL 502 (546)
Q Consensus 423 ~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~ 502 (546)
.+..+.+.|+++.|+.+|.+ .++.++..|+.+|.+++..++.....+.+.|+++.|+.+++++++.+++.|.++|.+
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTS---TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 55778899999999999997 468999999999999999887888888899999999999999999999999999999
Q ss_pred hhcCCcccc
Q 009036 503 MKGRAEEEE 511 (546)
Q Consensus 503 L~~~~~~~~ 511 (546)
|........
T Consensus 239 l~~~~~~~~ 247 (252)
T 4hxt_A 239 IKSGGWLEH 247 (252)
T ss_dssp HHHTCBCCC
T ss_pred HHcCCCccc
Confidence 998765544
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=1.1e-23 Score=228.89 Aligned_cols=279 Identities=18% Similarity=0.203 Sum_probs=250.5
Q ss_pred chhHHHHHHhcCCCC-HHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchH
Q 009036 226 NEQEDYFVQKLKSPQ-VHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINK 303 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk 303 (546)
.+.++.|+..|++++ +++|..|++.|.+++..++.++..+++.|+++.|+.+|.+++..+++.|+++|.+|+.+ +.++
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 467899999998886 99999999999999998899999999999999999999999999999999999999986 5678
Q ss_pred HHHHhcCChHHHHHHH-ccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc
Q 009036 304 MLIVRSGLVPPIVDVL-MAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK 382 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL-~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~ 382 (546)
..+.+.|+++.|+.+| .+.+..++..|+++|.+|+............++++.|+.+|.+.+..++..|+++|.+|+...
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 8888999999999999 566899999999999999987655444556899999999999999999999999999999866
Q ss_pred hhH-HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036 383 SNR-TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL 458 (546)
Q Consensus 383 ~n~-~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L 458 (546)
..+ ..+++.|+++.|+.+|.+.+ ++..|+.+|.||+. .+..+..+++.|+++.|+.+|.+. .++.++..|+.+|
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~v~~~A~~~L 353 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN--LKKSIKKEACWTI 353 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC--CcHHHHHHHHHHH
Confidence 554 57778899999999998754 89999999999997 455677788999999999999983 2689999999999
Q ss_pred HHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 459 YALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 459 ~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
.+|+.++......+...|+++.|+.++.++++.+++.|.++|..|+..
T Consensus 354 ~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 354 SNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999988777777778889999999999999999999999999999876
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=4.2e-24 Score=208.11 Aligned_cols=236 Identities=25% Similarity=0.301 Sum_probs=217.1
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKML 305 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~ 305 (546)
+.++.|++.|+++++++|..|+..|.+++..++.++..+.+.|+++.|+.+|.+++..++..|+.+|.+|+.+ ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 4578999999999999999999999999999888999999999999999999999999999999999999997 889999
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHhhccc-ccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-ch
Q 009036 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL-DDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KS 383 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-~~ 383 (546)
+.+.|+++.|+.+|++++++++..|+.+|.+|+. .++++..+.+.|+++.|+++|.++++.++..|+++|.+|+.. +.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999994 567788888899999999999999999999999999999984 45
Q ss_pred hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036 384 NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYA 460 (546)
Q Consensus 384 n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~ 460 (546)
++..+++.|+++.|+.++.+++ ++..|+.+|.+|+. .++.+..+.+.|+++.|++++.+ .++.+++.|+.+|.+
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS---TDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC---CcHHHHHHHHHHHHH
Confidence 5688889999999999998754 89999999999997 55667788899999999999987 468999999999999
Q ss_pred HhcCC
Q 009036 461 LSHGG 465 (546)
Q Consensus 461 L~~~~ 465 (546)
|+...
T Consensus 239 l~~~~ 243 (252)
T 4hxt_A 239 IKSGG 243 (252)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 98743
No 16
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.93 E-value=1.2e-24 Score=243.92 Aligned_cols=282 Identities=13% Similarity=0.085 Sum_probs=248.3
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
.++++.|+..|+++++.+|+.|++.|.+++. ++.+|..+++.|++++|+.+|.+++...++.|+++|.||+........
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 4688999999999999999999999999996 467999999999999999999999999999999999999875433322
Q ss_pred H---HhcCChHHHHHHHccC-CHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036 306 I---VRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 306 i---~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~ 380 (546)
+ ...|++++|+.+|.++ +...+..|+.+|.||+..+ +++..|.+.|+++.|+.+|.++++.+++.|+++|.||+.
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 2 1136999999999876 5566679999999999875 678888889999999999999999999999999999999
Q ss_pred CchhHHHHHh-cCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHh-CCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036 381 VKSNRTKLVK-LGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLD-SGGVECLVGMLRKGTELSESTQESCV 455 (546)
Q Consensus 381 ~~~n~~~iv~-~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~-~g~i~~Lv~lL~~~~~~s~~~~e~Av 455 (546)
.++++..++. .|+++.|+.++...+ +++.|+++|.||+. .++....+++ .|+++.|+.+|.+ .+.+.+..|+
T Consensus 653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s---~d~~vq~~A~ 729 (810)
T 3now_A 653 SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN---PSPAVQHRGI 729 (810)
T ss_dssp SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC---SSHHHHHHHH
T ss_pred ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC---CCHHHHHHHH
Confidence 9999999996 699999999998754 89999999999998 6788888998 8999999999998 5699999999
Q ss_pred HHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC---CHHHHHHHHHHHHHhhcCCcccc
Q 009036 456 SVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG---SEHVKEKAKRMLELMKGRAEEEE 511 (546)
Q Consensus 456 ~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~---s~~~k~~A~~lL~~L~~~~~~~~ 511 (546)
.+|.+++.++.+....+.+.|+++.|..+++.. +.++.+.|.++|..+-+.+..+.
T Consensus 730 ~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~ 788 (810)
T 3now_A 730 VIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER 788 (810)
T ss_dssp HHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence 999999987777888899999999999998654 79999999999999987655444
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=7.2e-24 Score=230.36 Aligned_cols=295 Identities=17% Similarity=0.183 Sum_probs=255.1
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHccCC-HHHHHHHHHHHHHhhcC-Cch
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIISRY-TNVQVNAVAALVNLSLE-KIN 302 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s~~-~~v~~~A~~~L~nLs~~-~~n 302 (546)
...++.++..|.+++++.|..|+..|+.++.... ..+..+.+.|+++.|+.+|.+++ +.++..|+++|.+++.+ +++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 4568999999999999999999999999976544 67888899999999999999886 99999999999999996 788
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhc
Q 009036 303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLL-KSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~ 380 (546)
+..+++.|+++.|+.+|.+++++++..|+++|.+|+.+. ..+..+...|+++.|+.+| .+.+..++..|+++|.+|+.
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 889999999999999999999999999999999999774 5688888899999999999 56789999999999999998
Q ss_pred CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccH-HHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHH
Q 009036 381 VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGR-VAVLDSGGVECLVGMLRKGTELSESTQESCVSV 457 (546)
Q Consensus 381 ~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r-~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~ 457 (546)
...+....+..|+++.|+.+|.+.+ ++..++.+|.+|+...+.+ ..+++.|+++.|+.+|.. .+..+++.|+.+
T Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~---~~~~v~~~a~~~ 309 (528)
T 4b8j_A 233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH---PSPSVLIPALRT 309 (528)
T ss_dssp SSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC---SCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC---CChhHHHHHHHH
Confidence 7655555666899999999998754 8999999999999876665 566789999999999988 458999999999
Q ss_pred HHHHhcCChhhHHHHHHCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036 458 LYALSHGGLRFKGLAAAAGMAEVLMRMERVG-SEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS 528 (546)
Q Consensus 458 L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~-s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (546)
|.+|+.++......+.+.|+++.|+.++.++ ++.+++.|.++|.+|+..... ..+.+++.|++...
T Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~-----~~~~~~~~~~i~~L 376 (528)
T 4b8j_A 310 VGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD-----QIQAVINAGIIGPL 376 (528)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH-----HHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH-----HHHHHHHCCCHHHH
Confidence 9999998877788888899999999999999 999999999999999874321 23344555555443
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=2e-24 Score=211.37 Aligned_cols=235 Identities=22% Similarity=0.282 Sum_probs=214.2
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINKM 304 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk~ 304 (546)
...++.++..|++++.++|..|+..|+++...++.++..+.+.|+++.|+.+|.+++..++..|+.+|.+|+. +++++.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3457899999999999999999999987666677889999999999999999999999999999999999998 578999
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchh-hHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-c
Q 009036 305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNK-TAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-K 382 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-~ 382 (546)
.+.+.|+++.|+.+|++++++++..|+.+|.+|+..++.+ ..+.+.|+++.|+++|.+++..++..|+++|.+|+.. +
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999999999999999999999999999998887 7888899999999999999999999999999999984 5
Q ss_pred hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 009036 383 SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLY 459 (546)
Q Consensus 383 ~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~ 459 (546)
+++..+++.|+++.|+++|.+++ +++.|+.+|.||+. .++.+..+.+.|+++.|++++.+ .++.+++.|+.+|.
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH---ENEKIQKEAQEALE 247 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC---SSSHHHHTHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC---CCHHHHHHHHHHHH
Confidence 67778888999999999998754 89999999999995 56678888899999999999988 45799999999999
Q ss_pred HHhc
Q 009036 460 ALSH 463 (546)
Q Consensus 460 ~L~~ 463 (546)
+|+.
T Consensus 248 ~l~~ 251 (252)
T 4db8_A 248 KLQS 251 (252)
T ss_dssp TTC-
T ss_pred HHhc
Confidence 9874
No 19
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.92 E-value=1.1e-23 Score=229.30 Aligned_cols=300 Identities=18% Similarity=0.186 Sum_probs=254.5
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCC-----HHHHHHHHHHHHHhhcCC
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRY-----TNVQVNAVAALVNLSLEK 300 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~-----~~v~~~A~~~L~nLs~~~ 300 (546)
.++++.|+..|.+++.++++.|++.|.+++.+++.+|..+.+.|+++.|+.+|...+ ..+...++++|.+++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999999999999999999997643 457788999999999875
Q ss_pred chHHH-HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch-hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036 301 INKML-IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN-KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHL 378 (546)
Q Consensus 301 ~nk~~-i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L 378 (546)
..... ....++++.|+.+|.+++++++..|+++|.+|+...+. ...+...|+++.|+.+|.+.+..++..|+.+|.||
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 43332 33457899999999999999999999999999987644 56667789999999999999999999999999999
Q ss_pred hc-CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHH
Q 009036 379 SL-VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESC 454 (546)
Q Consensus 379 s~-~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~A 454 (546)
+. .+.++..+++.|+++.|+.+|.+++ +++.|+++|.||+.. ++.+..+.+.|+++.|+.+|.+ .+.+++..|
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~v~~~A 397 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK---ADFKTQKAA 397 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS---SCHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC---CCHHHHHHH
Confidence 87 4567788889999999999998754 899999999999974 4556777899999999999998 468999999
Q ss_pred HHHHHHHhc-CChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCCh-HHHHhcCCcccc
Q 009036 455 VSVLYALSH-GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDW-DELLDSGLVSRS 528 (546)
Q Consensus 455 v~~L~~L~~-~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~-~~~~~~~~~~~~ 528 (546)
+++|.+++. .+.+....+.+.|+++.|+.++...++++...+..+|.++....+...+...+ ..+.+.|++...
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i 473 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 473 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHH
Confidence 999999987 45566677889999999999999999999999999999987654332222122 235567776655
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=3.1e-23 Score=224.45 Aligned_cols=300 Identities=18% Similarity=0.216 Sum_probs=253.7
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHHccC-CHHHHHHHHHHHHHhhcCCch
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLIISR-YTNVQVNAVAALVNLSLEKIN 302 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~n 302 (546)
..+.++.|+..|++.++.+|..|+..|.+++... .++..+. ..|+++.|+.+|.+. +.+++..|+.+|.+|+.++++
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~ 93 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence 3578999999999999999999999999999864 4665555 459999999999754 899999999999999999889
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-
Q 009036 303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL- 380 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~- 380 (546)
+..+.+.|+++.|+.+|++++++++..|+.+|.+|+..+ +.+..+.+.|+++.|+.+|.+++.+++..++.+|.+|+.
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999874 567788889999999999999999999999999999997
Q ss_pred CchhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccC--------------
Q 009036 381 VKSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG-------------- 443 (546)
Q Consensus 381 ~~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~-------------- 443 (546)
+++++..+++.|+++.|+.+|.+++ ..+.++.+|.+|+.+++++..+++.|+++.|+.++.+.
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 4688999999999999999998643 67789999999999999999999888887777666542
Q ss_pred ----------------------CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC--CHHHHHHHHHH
Q 009036 444 ----------------------TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG--SEHVKEKAKRM 499 (546)
Q Consensus 444 ----------------------~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~--s~~~k~~A~~l 499 (546)
...++.+++.|+.+|.+|+.++...+..+.+.|+++.|+.++.+. ++.+++.|..+
T Consensus 254 l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~ 333 (529)
T 1jdh_A 254 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333 (529)
T ss_dssp HHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence 114577888899999999887777888888999999999998763 47999999999
Q ss_pred HHHhhcCCccccccCCh-HHHHhcCCcccc
Q 009036 500 LELMKGRAEEEEEGVDW-DELLDSGLVSRS 528 (546)
Q Consensus 500 L~~L~~~~~~~~~~~~~-~~~~~~~~~~~~ 528 (546)
|.+|+......+ .| ..+.+.|+++..
T Consensus 334 L~nl~~~~~~~~---~~~~~i~~~~~i~~L 360 (529)
T 1jdh_A 334 LRHLTSRHQEAE---MAQNAVRLHYGLPVV 360 (529)
T ss_dssp HHHHTSSSTTHH---HHHHHHHHTTCHHHH
T ss_pred HHHHHcCCchHH---HHHHHHHHcCChhHH
Confidence 999986533211 12 346666766554
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=1.1e-22 Score=221.42 Aligned_cols=279 Identities=15% Similarity=0.137 Sum_probs=249.8
Q ss_pred chhHHHHHHhcCCC-CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchH
Q 009036 226 NEQEDYFVQKLKSP-QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINK 303 (546)
Q Consensus 226 ~~~i~~lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk 303 (546)
.+.++.|+..|.+. ++++|..|++.|.+++..++..+..+++.|+++.|+.+|.+++..+++.|+++|.+|+.+ +.++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 46789999999887 899999999999999998888999999999999999999999999999999999999986 5788
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-
Q 009036 304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV- 381 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~- 381 (546)
..+...|+++.|+.+|.+.+.+++..|+++|.+|+... .........++++.|+.+|.+++..++..|+++|.+|+..
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 88889999999999999999999999999999999775 4444555678999999999999999999999999999975
Q ss_pred chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036 382 KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL 458 (546)
Q Consensus 382 ~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L 458 (546)
++....+++.|+++.|+.+|.+.+ ++..|+.+|.+|+.. ++....+++.|+++.|+.+|.+ .+..++..|+.+|
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~vr~~A~~aL 365 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKEACWTI 365 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 456777888899999999998754 889999999999965 4556677789999999999988 4589999999999
Q ss_pred HHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 459 YALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 459 ~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
.+++.++......+.+.|+++.|+.++.++++.++..|.++|..|+...
T Consensus 366 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 9999877666666778899999999999999999999999999998653
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=6.8e-23 Score=222.93 Aligned_cols=295 Identities=18% Similarity=0.193 Sum_probs=254.5
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhhcC-Cch
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRS-REETRVSLCTPRLLLALRSLIISR-YTNVQVNAVAALVNLSLE-KIN 302 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~l~~~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~-~~n 302 (546)
...++.++..|++++++.|..|+..|+.+... ....+..+.+.|+++.|+.+|.++ ++.++..|+++|.+++.. +++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 35689999999999999999999999998654 345667788999999999999987 899999999999999986 567
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036 303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 381 (546)
+..+++.|+++.|+.+|.+++++++..|+++|.+|+... +.+..+...|+++.|+.+|.+.+..++..|+++|.+|+..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 888889999999999999999999999999999999874 6788888899999999999999999999999999999986
Q ss_pred c-hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHH
Q 009036 382 K-SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSV 457 (546)
Q Consensus 382 ~-~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~ 457 (546)
. .........|+++.|+.+|.+.+ ++..++.+|.+|+.. ++.+..+++.|+++.|+.+|.+ .+..+++.|+.+
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~---~~~~v~~~a~~~ 322 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH---ESTLVQTPALRA 322 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC---CChhhHHHHHHH
Confidence 5 55556667899999999998754 889999999999975 4567778889999999999987 468999999999
Q ss_pred HHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036 458 LYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS 528 (546)
Q Consensus 458 L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (546)
|.+++.++......+.+.|+++.|+.++.++++.+++.|.++|..|+..... ..+.+++.|+++..
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~-----~~~~~~~~~~l~~L 388 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE-----QIQAVIDANLIPPL 388 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-----HHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-----HHHHHHHCCCHHHH
Confidence 9999998777777788889999999999999999999999999999975321 12344455555443
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=1.6e-23 Score=204.84 Aligned_cols=234 Identities=22% Similarity=0.316 Sum_probs=213.7
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccc-ccchhhH
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL-DDQNKTA 346 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~ 346 (546)
...+.++.+|.+++++++..|+.+|.++.. +++++..+.+.|+++.|+.+|++++++++..|+.+|.+|+. .++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 468999999999999999999999976544 67788889999999999999999999999999999999998 4678888
Q ss_pred HhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH-HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cc
Q 009036 347 IGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR-TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SD 422 (546)
Q Consensus 347 i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~-~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e 422 (546)
+.+.|+++.|+.+|+++++.++..|+++|.+|+...+++ ..+++.|+++.|+++|.+++ +++.|+.+|.||+.. ++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 899999999999999999999999999999999998888 88899999999999998765 899999999999974 46
Q ss_pred cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009036 423 GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLEL 502 (546)
Q Consensus 423 ~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~ 502 (546)
.+..+.+.|+++.|+++|.+ .++.+++.|+.+|.+|+..++..+..+.+.|+++.|+.++.++++.+++.|..+|.+
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGC---SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 67777889999999999998 468999999999999998887888888899999999999999999999999999999
Q ss_pred hhc
Q 009036 503 MKG 505 (546)
Q Consensus 503 L~~ 505 (546)
|+.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 875
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.5e-22 Score=225.65 Aligned_cols=282 Identities=18% Similarity=0.239 Sum_probs=247.2
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc-CChHHHHHHHHccC-CHHHHHHHHHHHHHhhcCCch
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIISR-YTNVQVNAVAALVNLSLEKIN 302 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~-~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~n 302 (546)
..+.++.|+..|++.++.+|..|+..|.+++.... ++..+.. .|+++.|+.+|.+. +.+++..|+.+|.+|+.++++
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 35779999999999999999999999999998764 6666665 59999999999865 899999999999999999889
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-
Q 009036 303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL- 380 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~- 380 (546)
+..+.+.|+++.|+.+|+++++.++..|+.+|.+|+... ..+..+.+.|+++.|+.+|++++.+++..++.+|.+|+.
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999875 567777889999999999999999998889999999997
Q ss_pred CchhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccC--------------
Q 009036 381 VKSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG-------------- 443 (546)
Q Consensus 381 ~~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~-------------- 443 (546)
..+++..+++.|+++.|+.+|.+.+ .++.++.+|.||+.+++++..+++.|+++.|+.++...
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7789999999999999999998753 77889999999999999999999999888877665431
Q ss_pred ----------------------CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC-C-HHHHHHHHHH
Q 009036 444 ----------------------TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG-S-EHVKEKAKRM 499 (546)
Q Consensus 444 ----------------------~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~-s-~~~k~~A~~l 499 (546)
...+..+++.|+.+|.+|+..+...+..+.+.|+++.|+.++.+. + +.+++.|..+
T Consensus 251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 013577888888888888887777788888899999999998864 3 7999999999
Q ss_pred HHHhhcCC
Q 009036 500 LELMKGRA 507 (546)
Q Consensus 500 L~~L~~~~ 507 (546)
|.+|+...
T Consensus 331 L~nL~~~~ 338 (644)
T 2z6h_A 331 LRHLTSRH 338 (644)
T ss_dssp HHHHTSSS
T ss_pred HHHHhcCC
Confidence 99998643
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=4.7e-22 Score=210.52 Aligned_cols=276 Identities=17% Similarity=0.188 Sum_probs=244.8
Q ss_pred hhHHHHHHhcCCC-CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHH
Q 009036 227 EQEDYFVQKLKSP-QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKM 304 (546)
Q Consensus 227 ~~i~~lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~ 304 (546)
+.++.|++.|++. ++++|..|++.|.+++..+.+++..+.+.|+++.|+.+|.++++.+++.|+.+|.+|+.+ +.++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6789999999888 899999999999999998888888888999999999999999999999999999999987 46788
Q ss_pred HHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhhccccc--chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036 305 LIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDD--QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 381 (546)
.+.+.|+++.|+.+|.+ .+.+++..|+++|.+|+... ..+..+ ..++++.|+.+|.+++..++..++++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88899999999999996 68999999999999999764 222222 278999999999999999999999999999985
Q ss_pred -chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcc-cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHH
Q 009036 382 -KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSD-GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSV 457 (546)
Q Consensus 382 -~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e-~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~ 457 (546)
.+++..++..|+++.|+.+|.+.+ ++..|+.+|.+|+...+ .+..+++.|+++.|+.+|.+ .+..++..|+.+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~vr~~a~~~ 299 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS---PKESIKKEACWT 299 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC---SSHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC---CCHHHHHHHHHH
Confidence 466778888899999999998654 89999999999997654 45567788999999999988 468999999999
Q ss_pred HHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 458 LYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 458 L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
|.+++.++......+.+.|+++.|+.++.++++.+|..|.++|..|+..
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999987766777777789999999999999999999999999999864
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.90 E-value=1.3e-21 Score=207.09 Aligned_cols=279 Identities=17% Similarity=0.150 Sum_probs=244.3
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCC--ch
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEK--IN 302 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~--~n 302 (546)
.+.++.|+..|+++++++|..|++.|.+++..++..+..+.+.|+++.|+.++.+ .+..++..|+++|.+|+.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 4678999999999999999999999999999988899999999999999999995 78999999999999999753 33
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036 303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 381 (546)
+..+. .++++.|+.+|.+++.+++..++++|.+|+... +.+..+...|+++.|+.+|.+.+..++..|+++|.+|+..
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 33333 689999999999999999999999999999864 5566677789999999999999999999999999999986
Q ss_pred ch-hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHH
Q 009036 382 KS-NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSV 457 (546)
Q Consensus 382 ~~-n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~ 457 (546)
.+ .+..+++.|+++.|+.+|.+++ ++..|+.+|.||+. +++....+++.|+++.|+.+|.+ .++.++..|+.+
T Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~---~~~~v~~~a~~~ 341 (450)
T 2jdq_A 265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT---AEFRTRKEAAWA 341 (450)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH---SCHHHHHHHHHH
T ss_pred ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc---CCHHHHHHHHHH
Confidence 54 4556778899999999998754 89999999999996 56677788889999999999998 468999999999
Q ss_pred HHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 458 LYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 458 L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
|.+++.+ +......+.+.|+++.|+.++.++++++++.|..+|..|....+
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 9999974 54555556678999999999999999999999999999987544
No 27
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=1.6e-22 Score=195.44 Aligned_cols=193 Identities=21% Similarity=0.221 Sum_probs=175.0
Q ss_pred hhHHHHHHhcCCCCH--HHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchH
Q 009036 227 EQEDYFVQKLKSPQV--HEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINK 303 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~--~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk 303 (546)
-+++.+|+.|.++++ +.|..|+..|++++..++.+|..+.+.|+||.|+.+|.+++.++|+.|+++|.||+. +++||
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 468999999999988 889999999999999999999999999999999999999999999999999999998 47999
Q ss_pred HHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc----------------cCCHH
Q 009036 304 MLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK----------------SDSER 366 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~----------------~~~~~ 366 (546)
..|++.|+|+.|+.+|+ +++.+++++|+.+|++|+..+++|..|.+. ++++|+.++. ..+.+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998 479999999999999999999999999874 6999998763 12668
Q ss_pred HHHHHHHHHHHhhcC-chhHHHHHhc-CcHHHHHHHHhCc--------hHHHHHHHHHHHhhCC
Q 009036 367 TQHDSALALYHLSLV-KSNRTKLVKL-GSVNALLGMVNSG--------HMTGRVLLILGNLASC 420 (546)
Q Consensus 367 ~~~~A~~aL~~Ls~~-~~n~~~iv~~-Gav~~Lv~lL~~~--------~~~e~al~~L~nLa~~ 420 (546)
++.+|..+|+||+.. .++|..|.+. |+|+.|+.++... ..+|.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999984 5899999987 8899999999752 2789999999999864
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=1.1e-21 Score=212.21 Aligned_cols=294 Identities=18% Similarity=0.166 Sum_probs=252.6
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKM 304 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~ 304 (546)
.+.++.|++.|++++++.+..|+..|.+++..++..+..+.+.|+++.|+.+|.+++.+++..++.+|.+++.. ++++.
T Consensus 100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~ 179 (529)
T 1jdh_A 100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46789999999999999999999999999998888899999999999999999999999999999999999985 78899
Q ss_pred HHHhcCChHHHHHHHccCC-HHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036 305 LIVRSGLVPPIVDVLMAGS-AEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS 383 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~~~-~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~ 383 (546)
.+.+.|+++.|+.+|++++ ...+..++.+|.+|+..++++..+.+.|+++.|+.++.+++++++..++++|.+|+....
T Consensus 180 ~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence 9999999999999999874 566778899999999988999999999999999999999999999999999999998653
Q ss_pred hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036 384 NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYA 460 (546)
Q Consensus 384 n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~ 460 (546)
... ...|+++.|+++|.+.+ +++.++.+|.+|+.. ++++..+.+.|+++.|+++|.... .++.+++.|+.+|.+
T Consensus 260 ~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~-~~~~v~~~a~~~L~n 336 (529)
T 1jdh_A 260 KQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG-DREDITEPAICALRH 336 (529)
T ss_dssp TCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred hhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 321 22388999999998654 899999999999985 468999999999999999998632 247899999999999
Q ss_pred HhcCCh---hhHHHHHHCCcHHHHHHHHhcCC-HHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036 461 LSHGGL---RFKGLAAAAGMAEVLMRMERVGS-EHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS 528 (546)
Q Consensus 461 L~~~~~---~~~~~~~~~g~v~~L~~ll~~~s-~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (546)
|+.++. ..+..+...|+++.|+.++.+++ +.+++.|.++|.+++..... .+.+.+.|+++..
T Consensus 337 l~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~------~~~~~~~~~i~~L 402 (529)
T 1jdh_A 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN------HAPLREQGAIPRL 402 (529)
T ss_dssp HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG------HHHHHHTTHHHHH
T ss_pred HHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh------hHHHHHcCCHHHH
Confidence 988543 25667888899999999999886 59999999999999964321 2456666666544
No 29
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=195.20 Aligned_cols=194 Identities=21% Similarity=0.261 Sum_probs=172.6
Q ss_pred hHHHHHHHHccCCH--HHHHHHHHHHHHhhc-CCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhh
Q 009036 270 LLLALRSLIISRYT--NVQVNAVAALVNLSL-EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKT 345 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~--~v~~~A~~~L~nLs~-~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~ 345 (546)
.++.|+.+|.++++ ++|..|+..|.+|+. ++.++..|++.|+||.|+.+|++++++++..|+++|.+|+.. +++|.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999887 899999999999997 578999999999999999999999999999999999999985 68999
Q ss_pred HHhhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHh------------------CchH
Q 009036 346 AIGVLGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVN------------------SGHM 406 (546)
Q Consensus 346 ~i~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~------------------~~~~ 406 (546)
.|.+.|+|+.|+++|++ ++.++++.|+.+|+||+..+++|..+++. +++.|++++. +..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 99999999999999984 78999999999999999999999999975 7999998663 1248
Q ss_pred HHHHHHHHHHhhC-CcccHHHHHhC-CcHHHHHHHHccC---CCCCHHHHHHHHHHHHHHhcC
Q 009036 407 TGRVLLILGNLAS-CSDGRVAVLDS-GGVECLVGMLRKG---TELSESTQESCVSVLYALSHG 464 (546)
Q Consensus 407 ~e~al~~L~nLa~-~~e~r~~i~~~-g~i~~Lv~lL~~~---~~~s~~~~e~Av~~L~~L~~~ 464 (546)
.++|.++|.||+. ++++|..|.+. |+|+.|+.+++.+ ...+.+.+|+|+.+|++||..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 8999999999987 56999999985 6789999999873 223568899999999999864
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=3.8e-21 Score=214.27 Aligned_cols=294 Identities=18% Similarity=0.161 Sum_probs=253.1
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINKM 304 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk~ 304 (546)
.+.++.|++.|++++.++|..|+..|.+++...+..+..+.+.|+++.|+.+|.+++..++..++.+|.+|+. +++++.
T Consensus 97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~ 176 (644)
T 2z6h_A 97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176 (644)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4688999999999999999999999999999888888899999999999999999999999999999999997 678999
Q ss_pred HHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036 305 LIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS 383 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~ 383 (546)
.+.+.|+++.|+.+|++. ...++..++.+|.+|+...+++..+.+.|+++.|+.++.+++..++..++++|.+|+....
T Consensus 177 ~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 256 (644)
T 2z6h_A 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 256 (644)
T ss_dssp HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence 999999999999999987 4678889999999999988999999999999999999999999999999999999997543
Q ss_pred hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036 384 NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYA 460 (546)
Q Consensus 384 n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~ 460 (546)
.. ....|+++.|+.+|.+.+ +++.++.+|.+|+.. ++++..+.+.|+++.|+.+|.... ..+.+++.|+.+|.+
T Consensus 257 ~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~-~~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 257 KQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG-DREDITEPAICALRH 333 (644)
T ss_dssp TC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred hh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccC-CcHHHHHHHHHHHHH
Confidence 22 122378999999998654 899999999999985 467888899999999999998731 236899999999999
Q ss_pred HhcCCh---hhHHHHHHCCcHHHHHHHHhcCC-HHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036 461 LSHGGL---RFKGLAAAAGMAEVLMRMERVGS-EHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS 528 (546)
Q Consensus 461 L~~~~~---~~~~~~~~~g~v~~L~~ll~~~s-~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (546)
|+.... ..+..+...|+++.|+.++.+.+ +.+++.|.++|.+|+..... .+.+.+.|++...
T Consensus 334 L~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~------~~~i~~~~~i~~L 399 (644)
T 2z6h_A 334 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN------HAPLREQGAIPRL 399 (644)
T ss_dssp HTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG------HHHHHHTTHHHHH
T ss_pred HhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH------HHHHHHcCCHHHH
Confidence 987432 34556778899999999999875 69999999999999875321 2556677766654
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=3.8e-21 Score=218.67 Aligned_cols=281 Identities=19% Similarity=0.259 Sum_probs=243.5
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc-CChHHHHHHHHccC-CHHHHHHHHHHHHHhhcCCchH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIISR-YTNVQVNAVAALVNLSLEKINK 303 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~-~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~nk 303 (546)
.+.++.|+..|.+.+..+|..|+..|.+++... .++..+.+ .|+++.|+.+|.+. +.+++..|+.+|.+|+.+++++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 467899999999999999999999999999864 46666664 58999999999865 9999999999999999998899
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-C
Q 009036 304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-V 381 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~ 381 (546)
..+.+.|+++.|+.+|+++++.++..|+.+|.+|+... +.+..+.+.|+++.|+.+|.+++.+++..++.+|.+|+. +
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999874 567777789999999999999999999999999999997 5
Q ss_pred chhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCC--------------
Q 009036 382 KSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGT-------------- 444 (546)
Q Consensus 382 ~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~-------------- 444 (546)
.+++..+++.|+++.|+.+|.+++ ..+.++.+|.+|+.+++++..+++.|+++.|+.+|.+..
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 788999999999999999998754 667899999999999999999988887777766554310
Q ss_pred ----------------------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhc-CC-HHHHHHHHHHH
Q 009036 445 ----------------------ELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERV-GS-EHVKEKAKRML 500 (546)
Q Consensus 445 ----------------------~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~-~s-~~~k~~A~~lL 500 (546)
..+..+++.|+.+|.+|+.++...+..+.+.|+++.|+.++.+ ++ +.+++.|..+|
T Consensus 388 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 388 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 1457788888889999988777778888889999999999876 33 48999999999
Q ss_pred HHhhcCC
Q 009036 501 ELMKGRA 507 (546)
Q Consensus 501 ~~L~~~~ 507 (546)
.+|+...
T Consensus 468 ~nL~~~~ 474 (780)
T 2z6g_A 468 RHLTSRH 474 (780)
T ss_dssp HHTTSSS
T ss_pred HHHHhcC
Confidence 9998643
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=5.3e-21 Score=217.48 Aligned_cols=276 Identities=22% Similarity=0.224 Sum_probs=241.7
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKM 304 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~ 304 (546)
.+.++.|+..|.+.+.+.+..|+..|.+++..... .....++++.|+.+|.+.+..++..|+.+|.+|+.. ++++.
T Consensus 359 ~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~ 435 (780)
T 2z6g_A 359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 435 (780)
T ss_dssp TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 35678889999988999999999999999976532 223457999999999999999999999999999986 47888
Q ss_pred HHHhcCChHHHHHHHcc-C-CHHHHHHHHHHHhhccccc-c---hhhHHhhcCChHHHHHhhccCC-HHHHHHHHHHHHH
Q 009036 305 LIVRSGLVPPIVDVLMA-G-SAEAQEHACGAIFSLALDD-Q---NKTAIGVLGALPPLLHLLKSDS-ERTQHDSALALYH 377 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~-~-~~~~~~~Aa~~L~~Ls~~~-~---~k~~i~~~g~l~~Lv~lL~~~~-~~~~~~A~~aL~~ 377 (546)
.+.+.|+++.|+.+|.+ + ..+++..|+.+|.+|+... + .+..+...|+++.|+.+|.+++ ..+++.|+++|.|
T Consensus 436 ~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~n 515 (780)
T 2z6g_A 436 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 515 (780)
T ss_dssp HHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 88999999999999986 3 3599999999999998754 2 2557777899999999999875 4899999999999
Q ss_pred hhcCchhHHHHHhcCcHHHHHHHHhCch------------------------HHHHHHHHHHHhhCCcccHHHHHhCCcH
Q 009036 378 LSLVKSNRTKLVKLGSVNALLGMVNSGH------------------------MTGRVLLILGNLASCSDGRVAVLDSGGV 433 (546)
Q Consensus 378 Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~------------------------~~e~al~~L~nLa~~~e~r~~i~~~g~i 433 (546)
|+....++..+++.|+++.|+++|.+++ +++.++.+|.+|+..++++..+.+.|++
T Consensus 516 La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i 595 (780)
T 2z6g_A 516 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTI 595 (780)
T ss_dssp HHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCH
T ss_pred HhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcH
Confidence 9999999999999999999999996532 5678999999999999999999999999
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 434 ECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 434 ~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
+.|+.+|.+ .++.++..|+.+|.+|+.. ...+..+.+.|+++.|+.++.+.++.+++.|..+|..|....+
T Consensus 596 ~~Lv~lL~~---~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 596 PLFVQLLYS---PIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHGGGC---SCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 999999998 4689999999999999854 5678888999999999999999999999999999999997654
No 33
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.87 E-value=1.6e-22 Score=168.68 Aligned_cols=79 Identities=25% Similarity=0.359 Sum_probs=72.0
Q ss_pred CCCCCCCCceeCcccccccCCCeecCCC-ccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009036 37 PQTAEPPGEFLCPVSGSLMADPVVVSSG-HTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLN 115 (546)
Q Consensus 37 ~~~~~~p~~~~CpI~~~~m~dPV~~~~G-~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~ 115 (546)
.....+|++|.||||+++|+|||+++|| |||||.||++|+.. +..||.|++++...+|+||+.|+++|+.|+.+|++.
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 3345789999999999999999999999 99999999999985 568999999999999999999999999999999865
Q ss_pred C
Q 009036 116 P 116 (546)
Q Consensus 116 ~ 116 (546)
.
T Consensus 93 ~ 93 (98)
T 1wgm_A 93 S 93 (98)
T ss_dssp S
T ss_pred h
Confidence 4
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=1e-20 Score=179.73 Aligned_cols=195 Identities=22% Similarity=0.286 Sum_probs=178.5
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINKM 304 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk~ 304 (546)
.+..+.|+..|++.+++++..|++.|.+++..++.++..+.+.|+++.|+.+|.++++.++..|+.+|.||+. ++.++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 4567889999999999999999999999999899999999999999999999999999999999999999996 568889
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-c
Q 009036 305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-K 382 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-~ 382 (546)
.+.+.|+++.|+.+|+++++.++..|+++|.+|+... +.+..+.+.|+++.|+++|++++.+++..|+++|.+|+.. +
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999999999765 4566777899999999999999999999999999999986 7
Q ss_pred hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC
Q 009036 383 SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC 420 (546)
Q Consensus 383 ~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~ 420 (546)
+++..+++.|+++.|++++.+++ +++.|+.+|.+|+.+
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 78888999999999999998754 899999999999863
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.8e-20 Score=206.61 Aligned_cols=284 Identities=13% Similarity=0.121 Sum_probs=229.6
Q ss_pred chhHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCh--------------------------------------hhhHHhh
Q 009036 226 NEQEDYFVQKLKS-PQVHEVEEALISLRKLTRSRE--------------------------------------ETRVSLC 266 (546)
Q Consensus 226 ~~~i~~lv~~L~s-~~~~~~~~Al~~L~~La~~~~--------------------------------------~~r~~l~ 266 (546)
.+.++.|+..++. .+....-.++..|.+++...+ .++..+.
T Consensus 375 ~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ 454 (778)
T 3opb_A 375 ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL 454 (778)
T ss_dssp HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH
Confidence 3456777777763 555566667777777665211 1677888
Q ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHH---HHHHHHHHHhhcccccch
Q 009036 267 TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAE---AQEHACGAIFSLALDDQN 343 (546)
Q Consensus 267 ~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~---~~~~Aa~~L~~Ls~~~~~ 343 (546)
++|+|+.|+.++.++++.+++.|+++|.||+.++++|..+++.|+++.|+.+|.++... .+..|+.+|.+|....+.
T Consensus 455 eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp TTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999988654 899999999999877666
Q ss_pred hhHHhh---cCChHHHHHhhcc--CCH------------HHHHHHHHHHHHhhcCc-----hhHHHHHhc-CcHHHHHHH
Q 009036 344 KTAIGV---LGALPPLLHLLKS--DSE------------RTQHDSALALYHLSLVK-----SNRTKLVKL-GSVNALLGM 400 (546)
Q Consensus 344 k~~i~~---~g~l~~Lv~lL~~--~~~------------~~~~~A~~aL~~Ls~~~-----~n~~~iv~~-Gav~~Lv~l 400 (546)
...+.. .|++++|+.+|.. +.. --+.+|+.||.||+..+ +.|.++++. |+++.|.++
T Consensus 535 ~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L 614 (778)
T 3opb_A 535 GLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL 614 (778)
T ss_dssp HHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG
T ss_pred HHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH
Confidence 655532 4899999999983 211 23679999999999976 348889996 999999999
Q ss_pred HhCch--HHHHHHHHHHHhhCCcccH-HHHHhCC------cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009036 401 VNSGH--MTGRVLLILGNLASCSDGR-VAVLDSG------GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGL 471 (546)
Q Consensus 401 L~~~~--~~e~al~~L~nLa~~~e~r-~~i~~~g------~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~ 471 (546)
|.+.+ ++..|+.+|+||+.+++++ ..+.+.+ .++.||.++.. .+.+.+..|.++|.+++...+.....
T Consensus 615 L~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s---~D~~~r~AAagALAnLts~~~~ia~~ 691 (778)
T 3opb_A 615 MLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL---SDVESQRAVAAIFANIATTIPLIAKE 691 (778)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCChHHHHH
Confidence 98754 8999999999999999886 3554322 37889999977 57999999999999998766555554
Q ss_pred HHH-CCcHHHHHHHHhc--CCHHHHHHHHHHHHHhhcCCccccc
Q 009036 472 AAA-AGMAEVLMRMERV--GSEHVKEKAKRMLELMKGRAEEEEE 512 (546)
Q Consensus 472 ~~~-~g~v~~L~~ll~~--~s~~~k~~A~~lL~~L~~~~~~~~~ 512 (546)
+.+ .++++.|+.++++ .++.++..+..+|.+|.....++.+
T Consensus 692 ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~ 735 (778)
T 3opb_A 692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGT 735 (778)
T ss_dssp HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTT
T ss_pred HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCC
Confidence 444 4799999999999 8999999999999999986554443
No 36
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.86 E-value=3.8e-22 Score=167.03 Aligned_cols=75 Identities=25% Similarity=0.344 Sum_probs=69.9
Q ss_pred CCCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009036 39 TAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSL 114 (546)
Q Consensus 39 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 114 (546)
...+|++|.||||+++|+|||+++|||||||.||++|+. ++..||.|++++...+|+||+.|+++|+.|+.+|+.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 357899999999999999999999999999999999998 456899999999999999999999999999998864
No 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.86 E-value=2.8e-22 Score=162.97 Aligned_cols=73 Identities=25% Similarity=0.349 Sum_probs=68.5
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQS 113 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~ 113 (546)
..+|++|.||||+++|+|||+++|||||||.||++|+.. +..||.|++++...+|+||+.|+++|+.|+.+|+
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999999999999999984 5689999999998899999999999999998875
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.85 E-value=4.6e-20 Score=175.26 Aligned_cols=195 Identities=24% Similarity=0.344 Sum_probs=176.5
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-CchhH
Q 009036 308 RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-VKSNR 385 (546)
Q Consensus 308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~~n~ 385 (546)
..+..+.|+.+|++.+++++..|+++|.+|+.. ++.+..+.+.|+++.|+.+|.++++.++..|+++|.+|+. .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 357899999999999999999999999999954 5678888889999999999999999999999999999996 66788
Q ss_pred HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 386 TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 386 ~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
..+++.|+++.|+.+|.+++ +++.|+.+|.||+. .++.+..+++.|+++.|+++|.+ .+..+++.|+.+|.+++
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHH
Confidence 99999999999999998765 89999999999996 45566778899999999999998 46899999999999999
Q ss_pred cCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 463 HGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 463 ~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
..++..+..+.+.|+++.|+.++.++++.+++.|..+|..|++
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9878888889999999999999999999999999999999875
No 39
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.84 E-value=1.7e-21 Score=178.77 Aligned_cols=77 Identities=23% Similarity=0.229 Sum_probs=71.7
Q ss_pred CCCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009036 39 TAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLN 115 (546)
Q Consensus 39 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~ 115 (546)
...+|++|.||||+++|+|||+++|||||||.||++|+..+..+||.|+.++...+|+||+.|+++|+.|+..|++.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 45789999999999999999999999999999999999865447999999999889999999999999999999975
No 40
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.81 E-value=2.1e-20 Score=149.67 Aligned_cols=76 Identities=36% Similarity=0.578 Sum_probs=71.5
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLN 115 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~ 115 (546)
..+|++|.||||+++|+|||+++|||+||+.||.+|++.+...||.|+..+...++.||+.|+++|+.|..+|+++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999999999999999877789999999998889999999999999999999863
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.79 E-value=5.6e-18 Score=170.21 Aligned_cols=221 Identities=18% Similarity=0.179 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHH-HHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhh
Q 009036 283 TNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVD-VLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLL 360 (546)
Q Consensus 283 ~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL 360 (546)
.+.+..|+..|.++..+.+|...+.+.|+++.|+. +|.+++++++..|+++|.+++.++ ..+..+.+.|+++.|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 45677889999999998889999999999999999 999999999999999999999865 5688888899999999999
Q ss_pred ccC-CHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHH
Q 009036 361 KSD-SERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVEC 435 (546)
Q Consensus 361 ~~~-~~~~~~~A~~aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~ 435 (546)
+++ +..+++.|+++|.||+.. +.....+++.|+++.|+.+|.+++ ++..|+++|.+|+. .++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 964 889999999999999985 455678888999999999998765 89999999999986 5778899999999999
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHC--CcHHHH---HHHHh-cC-CHHHHHHHHHHHHHhhcC
Q 009036 436 LVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAA--GMAEVL---MRMER-VG-SEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 436 Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~--g~v~~L---~~ll~-~~-s~~~k~~A~~lL~~L~~~ 506 (546)
|+.+|.. .+..+++.|+.+|.+|+.+.......+... .....| .+-++ .. +.++.++|..+|..+...
T Consensus 214 Lv~LL~~---~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 214 LVALVRT---EHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHTS---CCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcC---CChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 9999998 457899999999999998754433333321 122222 22344 22 578899999999988854
No 42
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.6e-18 Score=188.37 Aligned_cols=275 Identities=14% Similarity=0.170 Sum_probs=225.0
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc-CChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCc---
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKI--- 301 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~-~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~--- 301 (546)
...+.+++.|..++.+.+..|++.|..++.. +..|..+++ .|++..|+.++.. .+..+...++.+|.||+...+
T Consensus 334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 334 QLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence 4567788888887888899999999999885 466777775 6779999999985 788899999999999987321
Q ss_pred ------------------------------------hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhh
Q 009036 302 ------------------------------------NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKT 345 (546)
Q Consensus 302 ------------------------------------nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~ 345 (546)
++..+.+.|+++.|+.+++++++.+++.|+++|.+|+.+.++|.
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~ 492 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIP 492 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 45566788999999999999999999999999999999999999
Q ss_pred HHhhcCChHHHHHhhccCCHH---HHHHHHHHHHHhhcCchhHHHHH--h-cCcHHHHHHHHhC-ch-------------
Q 009036 346 AIGVLGALPPLLHLLKSDSER---TQHDSALALYHLSLVKSNRTKLV--K-LGSVNALLGMVNS-GH------------- 405 (546)
Q Consensus 346 ~i~~~g~l~~Lv~lL~~~~~~---~~~~A~~aL~~Ls~~~~n~~~iv--~-~Gav~~Lv~lL~~-~~------------- 405 (546)
.+.+.|+++.|+.+|.+++.. ++..|+.+|.+|+...+....+- . .|+|+.|+++|.. +.
T Consensus 493 ~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~ 572 (778)
T 3opb_A 493 QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIK 572 (778)
T ss_dssp HHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCC
T ss_pred HHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccccc
Confidence 999999999999999987544 88999999999986544333221 1 3999999999982 11
Q ss_pred --HHHHHHHHHHHhhCCc-----ccHHHHHhC-CcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhh-HHHHH---
Q 009036 406 --MTGRVLLILGNLASCS-----DGRVAVLDS-GGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRF-KGLAA--- 473 (546)
Q Consensus 406 --~~e~al~~L~nLa~~~-----e~r~~i~~~-g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~-~~~~~--- 473 (546)
-+..|+.+|.|||..+ +.|..++++ |+++.|..+|.+ .+..++..|+.++++|+...... ...+.
T Consensus 573 ~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s---~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~ 649 (778)
T 3opb_A 573 LTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD---ENVPLQRSTLELISNMMSHPLTIAAKFFNLEN 649 (778)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC---SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS
T ss_pred HHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC---CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC
Confidence 1668999999999986 347888886 999999999998 46899999999999999865432 23321
Q ss_pred --HCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 474 --AAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 474 --~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
..+.++.|+.|+..++.++|+.|.++|.+++.
T Consensus 650 ~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 650 PQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 11247899999999999999999999999964
No 43
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.78 E-value=1e-19 Score=181.68 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCCCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009036 38 QTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLN 115 (546)
Q Consensus 38 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~ 115 (546)
...++|++|.||||+++|+|||+++|||||||.||++|+..+..+||.|+.++...+++||+.|+++|+.||..|++.
T Consensus 201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 346789999999999999999999999999999999999876666999999999889999999999999999999875
No 44
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2e-19 Score=149.17 Aligned_cols=76 Identities=24% Similarity=0.248 Sum_probs=65.7
Q ss_pred CCCCceeCcccccccCCCeecC-CCccccHHHHHHHHhcC-----CCCCCC--CCCC-CCCCCCcccHHHHHHHHHHHHH
Q 009036 41 EPPGEFLCPVSGSLMADPVVVS-SGHTFERACAHVCKTLG-----FTPTLV--DGTT-PDFSTVIPNLALKSTILNWCHK 111 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~-----~~~cp~--~~~~-~~~~~l~pn~~l~~~i~~~~~~ 111 (546)
..+++|.||||+++|+|||+++ |||+|||.||++||..+ ...||. |+.. +...+|+||+.|+++|+.|+..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3578999999999999999996 99999999999999753 348999 5544 7788999999999999999998
Q ss_pred cCCCC
Q 009036 112 QSLNP 116 (546)
Q Consensus 112 ~~~~~ 116 (546)
++...
T Consensus 83 ~~r~~ 87 (94)
T 2yu4_A 83 RHRHS 87 (94)
T ss_dssp CCSCC
T ss_pred hcccc
Confidence 87433
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.77 E-value=3.7e-17 Score=164.22 Aligned_cols=234 Identities=19% Similarity=0.210 Sum_probs=186.0
Q ss_pred hhHHHHHHhcCCC------------CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHH-HHccCCHHHHHHHHHHH
Q 009036 227 EQEDYFVQKLKSP------------QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRS-LIISRYTNVQVNAVAAL 293 (546)
Q Consensus 227 ~~i~~lv~~L~s~------------~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~-lL~s~~~~v~~~A~~~L 293 (546)
..++..+..|.+. +.+.+..|+..|..+... ..+...+.+.|+++.|+. +|.++++.+++.|+++|
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~L 106 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLI 106 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3456677777654 346788899999999984 458888899999999999 99999999999999999
Q ss_pred HHhhcC-CchHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHH
Q 009036 294 VNLSLE-KINKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHD 370 (546)
Q Consensus 294 ~nLs~~-~~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~ 370 (546)
.+++.+ +..+..+++.|+++.|+.+|++. +..++..|+++|.+|+... .....+...|+++.|+.+|++++..+++.
T Consensus 107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~ 186 (296)
T 1xqr_A 107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVK 186 (296)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 999986 67888999999999999999965 8999999999999998765 45667777899999999999999999999
Q ss_pred HHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCc-ccHHHHHhC-CcHHHH----HHHHc
Q 009036 371 SALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCS-DGRVAVLDS-GGVECL----VGMLR 441 (546)
Q Consensus 371 A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~-e~r~~i~~~-g~i~~L----v~lL~ 441 (546)
|+++|.+|+. .++.+..+++.|+++.|+.+|.+++ +++.++.+|.||+... ..+..+... ..+..+ .+.+.
T Consensus 187 A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq 266 (296)
T 1xqr_A 187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ 266 (296)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHcc
Confidence 9999999987 5678999999999999999998755 9999999999999863 222222221 112222 22233
Q ss_pred cCCCCCHHHHHHHHHHHHHHh
Q 009036 442 KGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 442 ~~~~~s~~~~e~Av~~L~~L~ 462 (546)
..+ .+.+..+.|..+|-.+.
T Consensus 267 ~~e-~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 267 QHE-EYQEELEFCEKLLQTCF 286 (296)
T ss_dssp TCG-GGHHHHHHHHHHHHHHC
T ss_pred chH-HHHHHHHHHHHHHHHHc
Confidence 211 13566677766666554
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=131.42 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=68.0
Q ss_pred CCCCCCceeCcccccccCCCeecC-CCccccHHHHHHHHhc-CCCCCCCCCCCC-CCCCCcccHHHHHHHHHHHHHcCC
Q 009036 39 TAEPPGEFLCPVSGSLMADPVVVS-SGHTFERACAHVCKTL-GFTPTLVDGTTP-DFSTVIPNLALKSTILNWCHKQSL 114 (546)
Q Consensus 39 ~~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~-~~~~cp~~~~~~-~~~~l~pn~~l~~~i~~~~~~~~~ 114 (546)
...++++|.||||+++|.|||+++ |||+||+.||.+|+.. +...||.|+..+ ....+.||..++++|+.|...++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 356789999999999999999999 9999999999999975 456899999986 566899999999999999988765
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.60 E-value=1.1e-16 Score=120.96 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=49.8
Q ss_pred ceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHH
Q 009036 45 EFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLA 100 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~ 100 (546)
.|.||||+++|+|||++ +|||+|||.||++|++.+ ..||.|++++...+|+||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECcc
Confidence 58999999999999999 999999999999999854 35999999999999999864
No 48
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.58 E-value=7.2e-16 Score=171.76 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=69.4
Q ss_pred CCCCCceeCcccccccCCCeecCCC-ccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSG-HTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSL 114 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G-~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 114 (546)
.++|++|+|||++++|+|||++++| +||||++|++|+.. +.+||.|++++...+++||++||+.|++||..+..
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999998 79999999999986 55899999999999999999999999999998874
No 49
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.56 E-value=2.5e-13 Score=146.42 Aligned_cols=282 Identities=14% Similarity=0.147 Sum_probs=221.6
Q ss_pred chhHHHHHHhcCCC-CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhhcCC-c
Q 009036 226 NEQEDYFVQKLKSP-QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS--RYTNVQVNAVAALVNLSLEK-I 301 (546)
Q Consensus 226 ~~~i~~lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~-~ 301 (546)
.++++.|..+|.+. -.++|+.|+..|+.+++.. +.. +-.++++.|+..|.. .|.++...++.+|.++.... +
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y---~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY---RLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT---TTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh---HHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 67899999999544 5799999999999999753 333 335679999999975 48899999999998876532 1
Q ss_pred -----------------hHHHH-HhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc--chhhHHhh-cCChHHHHHhh
Q 009036 302 -----------------NKMLI-VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD--QNKTAIGV-LGALPPLLHLL 360 (546)
Q Consensus 302 -----------------nk~~i-~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~-~g~l~~Lv~lL 360 (546)
+.+.+ .+.+.++.|+.+|.+.+..+|.+++.+|..|+... ..+..|.. .++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 11222 34578999999999999999999999999998765 35777774 79999999999
Q ss_pred ccCCHHHHHHHHHHHHHhhcCchhHHHHHhc-CcHHHHHHHHhCc------hHHHHHHHHHHHhhCCc-ccHHHHHhCCc
Q 009036 361 KSDSERTQHDSALALYHLSLVKSNRTKLVKL-GSVNALLGMVNSG------HMTGRVLLILGNLASCS-DGRVAVLDSGG 432 (546)
Q Consensus 361 ~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~-Gav~~Lv~lL~~~------~~~e~al~~L~nLa~~~-e~r~~i~~~g~ 432 (546)
.+....+|.+|+.+|.+|+..+.+.++++.. |+++.|+.++... .+.+.|+.+|.||.... .++..|.+.|+
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 9999999999999999999988888888888 9999999999752 27899999999999754 58888999999
Q ss_pred HHHHHHHHccCCC---CCHHHHHH---HHHHHHHHhcCC------hhhHHHHHHCCcHHHHHHHHhcC--CHHHHHHHHH
Q 009036 433 VECLVGMLRKGTE---LSESTQES---CVSVLYALSHGG------LRFKGLAAAAGMAEVLMRMERVG--SEHVKEKAKR 498 (546)
Q Consensus 433 i~~Lv~lL~~~~~---~s~~~~e~---Av~~L~~L~~~~------~~~~~~~~~~g~v~~L~~ll~~~--s~~~k~~A~~ 498 (546)
++.|..+|..... .++....+ ++.++..|+..+ ...+..+.+.|++..|++++... ...++..|..
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 9999999875321 11223334 555555566542 24567889999999999997765 6778888888
Q ss_pred HHHHhhcCCcccc
Q 009036 499 MLELMKGRAEEEE 511 (546)
Q Consensus 499 lL~~L~~~~~~~~ 511 (546)
++-.+.+.....+
T Consensus 336 tla~~irgN~~~Q 348 (651)
T 3grl_A 336 TVSEVIRGCQVNQ 348 (651)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHhCCHHHH
Confidence 8877766554433
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.54 E-value=4.2e-15 Score=129.69 Aligned_cols=71 Identities=11% Similarity=0.094 Sum_probs=63.9
Q ss_pred CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHHH
Q 009036 41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF-STVIPNLALKSTILNWCHK 111 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-~~l~pn~~l~~~i~~~~~~ 111 (546)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+..+.. ..+.||..|+++++.|...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 3467899999999999999999999999999999998666799999999876 6899999999999998643
No 51
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.8e-15 Score=143.71 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=63.3
Q ss_pred CCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcC-CCCCCC--CCCCCCCCCCcccHHHHHHHHHHHHH
Q 009036 42 PPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLG-FTPTLV--DGTTPDFSTVIPNLALKSTILNWCHK 111 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~--~~~~~~~~~l~pn~~l~~~i~~~~~~ 111 (546)
...+|.||||+++|+|||++ .|||+|||.||.+||..+ ..+||+ |++.+...+|+||..|+++|+.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 46889999999999999985 999999999999999764 458999 98999888999999999999999664
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.51 E-value=7.1e-15 Score=132.32 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=63.2
Q ss_pred CCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCC-CCcccHHHHHHHHHHHH
Q 009036 42 PPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFS-TVIPNLALKSTILNWCH 110 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~-~l~pn~~l~~~i~~~~~ 110 (546)
++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+..+... .+.+|..|+++++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999999999999999999997666899999998877 89999999999999863
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.44 E-value=6.2e-14 Score=117.19 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=63.9
Q ss_pred CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009036 41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQ 112 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~ 112 (546)
.+++++.||||++.|.|||++ +|||+||+.||.+|+.. ...||.|+..+...++.||..++++|+.|....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 356789999999999999998 99999999999999984 458999999988778999999999999997764
No 54
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=2e-14 Score=116.38 Aligned_cols=66 Identities=24% Similarity=0.376 Sum_probs=57.7
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcC-----CCCCCCCCCCCCCCCCcccHHHHHHH
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLG-----FTPTLVDGTTPDFSTVIPNLALKSTI 105 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~-----~~~cp~~~~~~~~~~l~pn~~l~~~i 105 (546)
..+.+++.||||++.|.|||+++|||+||+.||.+|+... ...||.|+..+...++.||+.++++|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 4577899999999999999999999999999999999763 55899999999888899998766543
No 55
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.42 E-value=7.9e-15 Score=117.23 Aligned_cols=66 Identities=24% Similarity=0.451 Sum_probs=57.5
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcC------CCCCCCCCCCCCCCCCcccHHHHHHH
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLG------FTPTLVDGTTPDFSTVIPNLALKSTI 105 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~------~~~cp~~~~~~~~~~l~pn~~l~~~i 105 (546)
..+.+++.||||++.|.|||+++|||+||+.||.+|++.. ...||.|+..+...++.||+.|++++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 3567899999999999999999999999999999999753 45899999999888899998776543
No 56
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.42 E-value=3.2e-14 Score=122.38 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=61.6
Q ss_pred CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC-------CCCcccHHHHHHHHHHH
Q 009036 41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF-------STVIPNLALKSTILNWC 109 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-------~~l~pn~~l~~~i~~~~ 109 (546)
...++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+..+.. .++.+|..|..+|+.|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 4558899999999999999999999999999999998777789999998753 57788999999999985
No 57
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.41 E-value=9.4e-14 Score=118.04 Aligned_cols=68 Identities=12% Similarity=0.233 Sum_probs=60.9
Q ss_pred CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHH
Q 009036 41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFS----TVIPNLALKSTILNWC 109 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~----~l~pn~~l~~~i~~~~ 109 (546)
.+++++.||||+++|.|||++ +|||+||+.||.+|+..+ ..||.|+..+... .+.+|..+.++++.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 467899999999999999998 999999999999999854 6899999987765 6889999999999874
No 58
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.8e-13 Score=103.48 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=49.6
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTV 95 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l 95 (546)
..+++++.||||++.|+|||+++|||+||+.||.+|++.+...||.|+..+...++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 45678999999999999999999999999999999998666789999988776543
No 59
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.6e-14 Score=114.86 Aligned_cols=66 Identities=21% Similarity=0.389 Sum_probs=57.6
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL-----GFTPTLVDGTTPDFSTVIPNLALKSTI 105 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-----~~~~cp~~~~~~~~~~l~pn~~l~~~i 105 (546)
..+.+++.||||++.|+|||+++|||+||+.||.+|+.. +...||.|+..+...++.||+.|+++|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 457789999999999999999999999999999999875 355899999999888899998766543
No 60
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.40 E-value=3.1e-11 Score=130.22 Aligned_cols=281 Identities=15% Similarity=0.125 Sum_probs=220.9
Q ss_pred chhHHHHHHhcCC--CCHHHHHHHHHHHHHHhccChh-----------------hh-HHhhcCChHHHHHHHHccCCHHH
Q 009036 226 NEQEDYFVQKLKS--PQVHEVEEALISLRKLTRSREE-----------------TR-VSLCTPRLLLALRSLIISRYTNV 285 (546)
Q Consensus 226 ~~~i~~lv~~L~s--~~~~~~~~Al~~L~~La~~~~~-----------------~r-~~l~~~g~i~~Lv~lL~s~~~~v 285 (546)
..+++.|+..|+. .|.+....+++.|.++...++. +. ..+.+.+.|+.|+.+|.+.+-.+
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 4568889998854 4778888899999876654332 11 12346889999999999999999
Q ss_pred HHHHHHHHHHhhcC-C-chHHHHHhc-CChHHHHHHHccCCHHHHHHHHHHHhhcccccch-hhHHhhcCChHHHHHhhc
Q 009036 286 QVNAVAALVNLSLE-K-INKMLIVRS-GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN-KTAIGVLGALPPLLHLLK 361 (546)
Q Consensus 286 ~~~A~~~L~nLs~~-~-~nk~~i~~~-g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~l~~Lv~lL~ 361 (546)
+..++..|..|+.. + .+++.|... ++++.|+.+|++....+|..|+.+|.+|+.++.. +..+.-.|+++.|+.+++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999875 3 378888854 9999999999999999999999999999988755 666666899999999998
Q ss_pred cCC----HHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHHhCch--------HHH---HHHHHHHHhhCC-----
Q 009036 362 SDS----ERTQHDSALALYHLSLVK-SNRTKLVKLGSVNALLGMVNSGH--------MTG---RVLLILGNLASC----- 420 (546)
Q Consensus 362 ~~~----~~~~~~A~~aL~~Ls~~~-~n~~~iv~~Gav~~Lv~lL~~~~--------~~e---~al~~L~nLa~~----- 420 (546)
.+. ..+...++.+|.||...+ .|+..+.+.|.++.|..+|..+. ... .++.++..|+..
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 743 367899999999999854 59999999999999999997431 122 377777777763
Q ss_pred --cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCC---------cHHHHHHHHhc-C
Q 009036 421 --SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAG---------MAEVLMRMERV-G 488 (546)
Q Consensus 421 --~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g---------~v~~L~~ll~~-~ 488 (546)
..++.++.+.|++..|++++.... ....++..|+.++..+..++...+..+.... ++..|+.++.+ .
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~-~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~ 377 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATG-VPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ 377 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSS-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCC-CCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence 235778889999999999998743 3578999999999999999988888766532 33444444433 3
Q ss_pred CHHHHHHHHHHHHHhhcCC
Q 009036 489 SEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 489 s~~~k~~A~~lL~~L~~~~ 507 (546)
...+|-.|..+++.+....
T Consensus 378 ~~~lR~Aa~~cl~ay~~~N 396 (651)
T 3grl_A 378 PFVLRCAVLYCFQCFLYKN 396 (651)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHhCC
Confidence 5788889999998888655
No 61
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.39 E-value=9.2e-14 Score=116.32 Aligned_cols=72 Identities=8% Similarity=-0.044 Sum_probs=63.9
Q ss_pred CCCCceeCcccccccCCCee-cCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009036 41 EPPGEFLCPVSGSLMADPVV-VSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQ 112 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~ 112 (546)
.+.+++.||||+++|.|||+ ++|||+||+.||.+|+......||.|+..+...++++|..+..+++..-...
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 35588999999999999999 9999999999999999876678999999998889999999988887765543
No 62
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.39 E-value=2.7e-13 Score=106.84 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=50.2
Q ss_pred CCCCCCceeCcccccccCCCeecC-CCccccHHHHHHHHhcC-CCCCCCCCCCC-CCCCCccc
Q 009036 39 TAEPPGEFLCPVSGSLMADPVVVS-SGHTFERACAHVCKTLG-FTPTLVDGTTP-DFSTVIPN 98 (546)
Q Consensus 39 ~~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~-~~~cp~~~~~~-~~~~l~pn 98 (546)
...+++++.||||+++|.|||+++ |||+||+.||.+|+... ...||.|+... ....+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 346789999999999999999999 99999999999999753 45899999874 34445565
No 63
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.38 E-value=1.2e-13 Score=119.16 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=62.6
Q ss_pred CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009036 41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQ 112 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~ 112 (546)
.+.++|.||||+++|.|||++ +|||+||+.||.+|+. ..||.|+..+...++.||+.|+++++.|....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 356789999999999999999 9999999999999987 67999999998889999999999999986544
No 64
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2e-13 Score=109.67 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=54.7
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTIL 106 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~ 106 (546)
.+...++.||||++.|.|||+++|||+||+.||.+|++. ...||.|+..+. ..+.||..+...++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKLQ 74 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHHS
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHHH
Confidence 345678999999999999999999999999999999974 558999999886 57889966554443
No 65
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.38 E-value=1.5e-13 Score=118.64 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=62.9
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNW 108 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 108 (546)
..++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+..+....+.||..+++.|..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 357789999999999999999999999999999999987666899999999888899999999998875
No 66
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.36 E-value=2.1e-13 Score=125.02 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=61.9
Q ss_pred CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCC-CCCCcccHHHHHHHHHHHH
Q 009036 41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPD-FSTVIPNLALKSTILNWCH 110 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~-~~~l~pn~~l~~~i~~~~~ 110 (546)
.+.+++.||||++.|.|||++ +|||+||+.||.+|+..+...||.|+..+. ...+.||..+.++|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 455788999999999999998 999999999999999977788999999874 4569999999999999843
No 67
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9.4e-13 Score=103.15 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=52.3
Q ss_pred CCCCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036 39 TAEPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN 98 (546)
Q Consensus 39 ~~~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 98 (546)
...+.+++.||||++.|.|||++ +|||+||+.||.+|++. ...||.|+..+...++.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 34678899999999999999998 99999999999999975 4689999999888777776
No 68
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=102.52 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=48.8
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhc--CCCCCCCCCCCCCCCCC
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL--GFTPTLVDGTTPDFSTV 95 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~~~~~~~~~l 95 (546)
..+.+++.||||++.|.|||+++|||+||+.||.+|++. +...||.|+..+...++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 467889999999999999999999999999999999974 45589999998776543
No 69
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=4.7e-13 Score=114.36 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=60.5
Q ss_pred CCCceeCcccccccCCCeecCCCccccHHHHHHHHhcC--CCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009036 42 PPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLG--FTPTLVDGTTPDFSTVIPNLALKSTILNWCH 110 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~ 110 (546)
+.+.+.||||++.|+|||+++|||+||+.||.+|+... ...||.|+..+....+.+|..+.++++.+..
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999853 3589999999998899999888888877754
No 70
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=98.54 Aligned_cols=47 Identities=23% Similarity=0.494 Sum_probs=41.8
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhc--CCCCCCCC
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL--GFTPTLVD 86 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~ 86 (546)
..+.+++.||||++.|.|||+++|||+||+.||.+|++. +...||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 457789999999999999999999999999999999975 44578876
No 71
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.29 E-value=1.3e-12 Score=116.09 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=53.1
Q ss_pred CCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 009036 43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWC 109 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~ 109 (546)
.++|.||||++.|.|||+++|||+||+.||.+|+.. ...||.|+.++... .+|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 467899999999999999999999999999999874 45799999887542 35666777777765
No 72
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.28 E-value=9.3e-13 Score=113.34 Aligned_cols=68 Identities=18% Similarity=0.167 Sum_probs=57.3
Q ss_pred CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCc-ccHHHHHHHHHH
Q 009036 41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVI-PNLALKSTILNW 108 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~-pn~~l~~~i~~~ 108 (546)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+..+...++. ++..+.+++..+
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 45678999999999999999999999999999999987667899999998876765 556666666544
No 73
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.25 E-value=2.1e-12 Score=118.92 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=62.4
Q ss_pred CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009036 41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNW 108 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 108 (546)
.++++|.||||+++|.|||+++|||+||+.||.+|++.+...||.|+..+...++.||..+.+.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 57899999999999999999999999999999999987666899999999888899999999988765
No 74
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.25 E-value=8.8e-13 Score=117.26 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=56.6
Q ss_pred CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCC---------CCCCcccHHHHHHHHH
Q 009036 41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPD---------FSTVIPNLALKSTILN 107 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~---------~~~l~pn~~l~~~i~~ 107 (546)
.++++|.||||+++|+|||+++|||+||+.||.+|+..+...||.|+..+. ...+.|+..+++.|..
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 567899999999999999999999999999999999877668999987542 2246688888888764
No 75
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=3.9e-12 Score=97.46 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=49.4
Q ss_pred CceeCccccc-ccCCC----eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036 44 GEFLCPVSGS-LMADP----VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN 98 (546)
Q Consensus 44 ~~~~CpI~~~-~m~dP----V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 98 (546)
+++.||||++ +|.+| |+++|||+||+.||.+|+..+...||.|+..+...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5788999999 99999 5789999999999999988777789999999988888776
No 76
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.21 E-value=8.9e-10 Score=108.95 Aligned_cols=226 Identities=10% Similarity=0.005 Sum_probs=170.2
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
...++.|+..|.++++.++..|+..|..+.. .+.++.|+.+|.++++.++..|+.+|..+...+.....
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~ 90 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN 90 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH
Confidence 3468899999999999999999999988762 35789999999999999999999999988643322111
Q ss_pred HHhcCChHHHHH-HHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh
Q 009036 306 IVRSGLVPPIVD-VLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN 384 (546)
Q Consensus 306 i~~~g~l~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n 384 (546)
.++.|.. ++.+.++.+|..|+.+|..+...... ....+++.|+.+|.++++.++..|+.+|.++..
T Consensus 91 -----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 91 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 2334442 45677999999999999988632211 123467889999999999999999999987643
Q ss_pred HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 385 RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 385 ~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
.++++.|+.++.+++ ++..++.+|..+.... ..+++.|+.+|.+ .+..++..|+.+|..+.
T Consensus 158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQD---KNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTC---SCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcC---CCHHHHHHHHHHHHHhC
Confidence 358999999998765 8888999998875321 1356788888876 46889999999998875
Q ss_pred cCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 463 HGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 463 ~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
. ..+++.|+.++.+++ ++..|..+|..+..
T Consensus 221 ~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 221 D-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp C-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred C-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 2 236778888887654 77788887777643
No 77
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.21 E-value=6e-10 Score=105.37 Aligned_cols=188 Identities=18% Similarity=0.208 Sum_probs=155.0
Q ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhH
Q 009036 267 TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTA 346 (546)
Q Consensus 267 ~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~ 346 (546)
..+.++.|+.+|.+++..++..|+..|..+.. ...++.|+..|.+.++.++..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 35789999999999999999999999987642 367899999999999999999999998873
Q ss_pred HhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccH
Q 009036 347 IGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGR 424 (546)
Q Consensus 347 i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r 424 (546)
..+.++.|+.+|.+.++.++..|+.+|..+.. .++++.|+.+|.+++ ++..++.+|.++..
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 34678999999999999999999999998753 357899999998765 88899999988743
Q ss_pred HHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 425 VAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 425 ~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
...++.|+.++.+ .++.++..|+.+|..+.. ..+++.|..++.+.++.+|..|...|..+.
T Consensus 142 -----~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 -----ERAVEPLIKALKD---EDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp -----GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred -----HHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3578899999976 468999999999998842 125788999999999999999999999987
Q ss_pred cCCc
Q 009036 505 GRAE 508 (546)
Q Consensus 505 ~~~~ 508 (546)
....
T Consensus 203 ~~~~ 206 (211)
T 3ltm_A 203 SFNH 206 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 78
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.21 E-value=7.2e-10 Score=104.78 Aligned_cols=185 Identities=16% Similarity=0.145 Sum_probs=154.8
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
...++.|++.|++.++.++..|+..|..+.. ...++.|+.+|.+++..++..|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 5778999999999999999999999987653 3679999999999999999999999998742
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR 385 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~ 385 (546)
.+.++.|+..|.+.++.+|..|+.+|..+. ....++.|+.+|.++++.++..|+.+|.++..
T Consensus 80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 357899999999999999999999998873 34578999999999999999999999998843
Q ss_pred HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 386 TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 386 ~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
..+++.|+.++.+++ ++..++.+|..+.. ..+++.|..++.+ .++.++..|+.+|..+..
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 247899999998765 88889999988743 3467888888887 468999999999988876
Q ss_pred C
Q 009036 464 G 464 (546)
Q Consensus 464 ~ 464 (546)
.
T Consensus 204 ~ 204 (211)
T 3ltm_A 204 F 204 (211)
T ss_dssp -
T ss_pred C
Confidence 4
No 79
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.3e-11 Score=92.10 Aligned_cols=47 Identities=26% Similarity=0.337 Sum_probs=41.4
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhc--CCCCCCCC
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL--GFTPTLVD 86 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~ 86 (546)
..+.+++.||||++.|+|||+++|||+||+.||.+|+.. ....||.|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456788999999999999999999999999999999875 45578876
No 80
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.19 E-value=1.2e-09 Score=102.52 Aligned_cols=184 Identities=16% Similarity=0.156 Sum_probs=155.2
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM 304 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~ 304 (546)
.....+.+++.|+++++.++..|+..|..+.. ...++.|+.+|.++++.++..|+.+|..+..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 36778999999999999999999999987653 3679999999999999999999999987642
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh
Q 009036 305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN 384 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n 384 (546)
...++.|+..|.+.++.+|..|+.+|..+. ...+++.|+.+|.+.++.++..|+.+|..+..
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 357899999999999999999999998863 34578999999999999999999999998843
Q ss_pred HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 385 RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 385 ~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
..+++.|+.++.+++ ++..|+.+|..+.. ..+++.|..++.+ .++.++..|+.+|..+-
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 358899999998765 88899999988732 2367888888877 46889999999987763
No 81
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3.2e-11 Score=98.10 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=47.2
Q ss_pred CCCCCCceeCcccccccCC----CeecCCCccccHHHHHHHHhcC--CCCCCCCCCCCCC
Q 009036 39 TAEPPGEFLCPVSGSLMAD----PVVVSSGHTFERACAHVCKTLG--FTPTLVDGTTPDF 92 (546)
Q Consensus 39 ~~~~p~~~~CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~~ 92 (546)
...+.+++.||||++.|.| |++++|||+||+.||.+|++.. ...||.|+..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3467788999999999999 9999999999999999999864 4589999987654
No 82
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.16 E-value=1.5e-09 Score=101.70 Aligned_cols=184 Identities=18% Similarity=0.218 Sum_probs=154.6
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHH
Q 009036 268 PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAI 347 (546)
Q Consensus 268 ~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i 347 (546)
.+..+.++.+|.++++.++..|+.+|..+.. ...++.|+..|.++++.+|..|+.+|..+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 4678999999999999999999999997642 357899999999999999999999998763
Q ss_pred hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHH
Q 009036 348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRV 425 (546)
Q Consensus 348 ~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~ 425 (546)
...+++.|+.+|.+.++.++..|+.+|..+.. ..+++.|+.+|.+++ ++..|+.+|..+..
T Consensus 74 -~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 136 (201)
T 3ltj_A 74 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 136 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------
Confidence 34678999999999999999999999998743 247899999998765 88889999988753
Q ss_pred HHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 426 AVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 426 ~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
...++.|+.++.+ .+..++..|+.+|..+.. ..+++.|..++.+.++.+|..|...|..+..
T Consensus 137 ----~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ----ERAVEPLIKALKD---EDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ----GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ----HHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3578899999987 468999999999998832 1257889999999999999999999988754
No 83
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.8e-11 Score=95.49 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=44.7
Q ss_pred CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
...+++.||||++.|+|||+++|||+||+.||.+|+..+ ..||.|+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCH
Confidence 446788999999999999999999999999999998754 689999887654
No 84
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.14 E-value=1.5e-11 Score=95.86 Aligned_cols=58 Identities=17% Similarity=0.266 Sum_probs=50.9
Q ss_pred CCCCceeCcccccccCCC-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 009036 41 EPPGEFLCPVSGSLMADP-------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNL 99 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~ 99 (546)
...+++.||||++.|.+| ++++|||+||+.||.+|++.. ..||.|+..+...++.|++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeecc
Confidence 446789999999999999 899999999999999999754 5899999998888888763
No 85
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.09 E-value=5.3e-09 Score=103.30 Aligned_cols=222 Identities=12% Similarity=0.097 Sum_probs=168.0
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHH-HHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRS-LIISRYTNVQVNAVAALVNLSLEKINKM 304 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~-lL~s~~~~v~~~A~~~L~nLs~~~~nk~ 304 (546)
...++.|++.|++.++.++..|+..|..+........ .+++.|.. ++.++++.++..++.+|.++.......
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~- 125 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY- 125 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-
Confidence 4678899999999999999999999988764321111 23455553 456789999999999999986422110
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh
Q 009036 305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN 384 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n 384 (546)
....++.|+..|.+.++.+|..|+.+|..+.. ..+++.|+.+|.+++..++..|+++|..+....
T Consensus 126 ---~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-- 190 (280)
T 1oyz_A 126 ---SPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN-- 190 (280)
T ss_dssp ---HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--
T ss_pred ---cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--
Confidence 12357889999999999999999999998742 468999999999999999999999999885322
Q ss_pred HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 385 RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 385 ~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
..+++.|+.++.+.+ ++..|+.+|.++. ...+++.|+..+.+. .++..|+.+|..+.
T Consensus 191 ------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~-----~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 191 ------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKN-----TVYDDIIEAAGELG 249 (280)
T ss_dssp ------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSS-----SCCHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCc-----cHHHHHHHHHHhcC
Confidence 246788999998754 8889999998876 246889999999773 26778888888774
Q ss_pred cCChhhHHHHHHCCcHHHHHHHHhc-CCHHHHHHHHHHHH
Q 009036 463 HGGLRFKGLAAAAGMAEVLMRMERV-GSEHVKEKAKRMLE 501 (546)
Q Consensus 463 ~~~~~~~~~~~~~g~v~~L~~ll~~-~s~~~k~~A~~lL~ 501 (546)
. ..+++.|..++.+ .++.+...+...|+
T Consensus 250 ~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 250 D-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp C-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred c-----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 3 2468889998864 46777777777664
No 86
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.7e-11 Score=90.78 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=45.4
Q ss_pred CCCCCceeCcccccccCCC-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 40 AEPPGEFLCPVSGSLMADP-------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
..+++++.||||++.|.+| |+++|||+||+.||.+|+.. ...||.|+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3567889999999999999 89999999999999999985 5589999887653
No 87
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.05 E-value=3.9e-11 Score=91.33 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=47.7
Q ss_pred CceeCcccccccCCC-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036 44 GEFLCPVSGSLMADP-------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN 98 (546)
Q Consensus 44 ~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 98 (546)
+++.||||++.|.+| ++++|||+||+.||.+|++. ...||.|+..+...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 467899999999998 88999999999999999986 5589999999887777765
No 88
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.03 E-value=1.9e-10 Score=91.37 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=48.7
Q ss_pred CCCCCceeCcccccccCCC---eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036 40 AEPPGEFLCPVSGSLMADP---VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN 98 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dP---V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 98 (546)
.....++.||||++.|.+| ++++|||+||+.||.+|++.. ..||.|+..+...++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence 3456788999999999987 446999999999999999744 689999999887777665
No 89
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=2.9e-10 Score=90.09 Aligned_cols=55 Identities=15% Similarity=0.063 Sum_probs=46.2
Q ss_pred CCCCceeCccccccc--CCCeecC--CCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 009036 41 EPPGEFLCPVSGSLM--ADPVVVS--SGHTFERACAHVCKTLGFTPTLVDGTTPDFSTV 95 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m--~dPV~~~--~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l 95 (546)
...+++.||||++.| .||++++ |||+||+.||.+|++.+...||.|++++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456889999999999 5778776 999999999999887677799999998765443
No 90
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.96 E-value=6e-09 Score=119.35 Aligned_cols=271 Identities=13% Similarity=0.089 Sum_probs=189.9
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhH--Hhh--cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRV--SLC--TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKI 301 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~--~l~--~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~ 301 (546)
.+.++.++..+.++++..+..|+..|..+++.....-. .+. -..+++.|+.++.+++..++..|+.+|.++.....
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 35788999999999999999999999998876432211 000 13467778888888999999999999988775432
Q ss_pred hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 009036 302 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLS 379 (546)
Q Consensus 302 nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls 379 (546)
....-.-...++.|+..+.++++++|..|+.+|..++..... +..+ .+.++.++.++.+.+..++..|+.++..++
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLA 284 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 211000124678888888889999999999999998765322 1111 346778888888889999999999999998
Q ss_pred cCchhHHHHHhc---CcHHHHHHHH-----------hC-----------c--hHHHHHHHHHHHhhCCcccHHHHHhCCc
Q 009036 380 LVKSNRTKLVKL---GSVNALLGMV-----------NS-----------G--HMTGRVLLILGNLASCSDGRVAVLDSGG 432 (546)
Q Consensus 380 ~~~~n~~~iv~~---Gav~~Lv~lL-----------~~-----------~--~~~e~al~~L~nLa~~~e~r~~i~~~g~ 432 (546)
.....+. .+.. ..++.|+..+ .+ . .++..+..+|..|+.... ..++ ...
T Consensus 285 ~~~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l 360 (852)
T 4fdd_A 285 EQPICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PHI 360 (852)
T ss_dssp TSTTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HHH
T ss_pred cchhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHH
Confidence 7543333 2222 4566666666 22 1 156778888888775321 1111 134
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 433 i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
++.+...+.+ .+...++.|+.+|..++.+....... .-.++++.|+.++.+.++.+|..|.++|..++..
T Consensus 361 ~~~l~~~l~~---~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 361 LPLLKELLFH---HEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHHTC---SSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5666666665 46899999999999998765321111 1134688999999999999999999999998864
No 91
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.93 E-value=8.1e-09 Score=115.43 Aligned_cols=193 Identities=19% Similarity=0.190 Sum_probs=153.3
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHH-HhhccCCHHHHHHHHHHHHHhhcC--chhHHH
Q 009036 311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLL-HLLKSDSERTQHDSALALYHLSLV--KSNRTK 387 (546)
Q Consensus 311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv-~lL~~~~~~~~~~A~~aL~~Ls~~--~~n~~~ 387 (546)
.+.+++..|++.+++.|..|+.+|.+|+.+...+..+...+++..++ .+|.+.+.+++..|+++|.||+.. .+.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 45667788999999999999999999998878888888888887765 568888999999999999999974 578899
Q ss_pred HHhcCcHHHHHHHHhCc-----------------------hHHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccC
Q 009036 388 LVKLGSVNALLGMVNSG-----------------------HMTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKG 443 (546)
Q Consensus 388 iv~~Gav~~Lv~lL~~~-----------------------~~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~ 443 (546)
+++.|+++.|..+|... ++.+.++.+|++||. ..+....+...++++.|+..|...
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 99999999999998531 145678899999996 445566777889999999998654
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcH---HHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 444 TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMA---EVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 444 ~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v---~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
......++..|+.+|+.++.++......+.+.+.. ..|+.+ ...+...+..+.++|.++.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 33457899999999999999988877777776643 333333 3444555777888888874
No 92
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=5.1e-10 Score=86.82 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=45.5
Q ss_pred CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 009036 40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFST 94 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~ 94 (546)
..+.+++.||||++.+.+ |+++|||+||+.||.+|+. ....||.|+..+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 356788999999999999 9999999999999999988 5668999988766443
No 93
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.87 E-value=6.9e-09 Score=118.82 Aligned_cols=269 Identities=17% Similarity=0.123 Sum_probs=186.0
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh--cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchH-
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLC--TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINK- 303 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~--~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk- 303 (546)
..++.+++.|++.+.++|..|+..|..+...... .+. -..+++.|..++.+++.+++..|+.+|..++......
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 4567778888888999999999999887754321 111 1357888888898999999999999999988642211
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--cCChHHHHHhhc-----------c--C-----
Q 009036 304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--LGALPPLLHLLK-----------S--D----- 363 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~l~~Lv~lL~-----------~--~----- 363 (546)
.... .++++.++..+++.+++++..|+.++..++.....+..+.. ...++.|+..+. + +
T Consensus 251 ~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 251 LPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 1111 14678888888888999999999999998865544433321 235566666652 2 1
Q ss_pred ----CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHH
Q 009036 364 ----SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLV 437 (546)
Q Consensus 364 ----~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv 437 (546)
+-.+++.|+.+|..|+..... .++. .+++.+.+++.+.+ .++.|+.+|.+++........-.-.++++.|+
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~ 406 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 113578888888888763221 1222 36677777777654 88999999999997543211111245778888
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHHhcCChh--hHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 438 GMLRKGTELSESTQESCVSVLYALSHGGLR--FKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 438 ~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~--~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
..+.+ .++.++..|+.+|..++..... ..... ..+++.|+..+.+.++++|+.|..+|..+++..
T Consensus 407 ~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 407 QCLSD---KKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHTTC---SSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHcCC---CCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 88876 5689999999999998853110 11111 136788888888899999999999999998644
No 94
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2.7e-09 Score=83.59 Aligned_cols=52 Identities=15% Similarity=0.026 Sum_probs=44.4
Q ss_pred CCCCCceeCcccccccCCCeec---CCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 40 AEPPGEFLCPVSGSLMADPVVV---SSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~m~dPV~~---~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
.+...+..||||++.|.+|+.+ +|||.||+.||.+|++... .||.|+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCccccc
Confidence 3567788999999999988776 9999999999999998543 89999887654
No 95
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.85 E-value=7.5e-10 Score=97.05 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=48.6
Q ss_pred CCceeCcccccccCCC-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036 43 PGEFLCPVSGSLMADP-------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN 98 (546)
Q Consensus 43 p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 98 (546)
++++.||||++.|.|| |+++|||+||+.||.+|++.. ..||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccccc
Confidence 5789999999999999 999999999999999999754 489999998887777665
No 96
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=5.4e-10 Score=82.70 Aligned_cols=46 Identities=11% Similarity=0.041 Sum_probs=39.7
Q ss_pred CCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
.+++.||||++.|.|||+++|||+||+.||.+| ...||.|+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 467889999999999999999999999999773 4579999887543
No 97
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.82 E-value=1.9e-09 Score=82.94 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=40.8
Q ss_pred CceeCcccccccCCC-eecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 44 GEFLCPVSGSLMADP-VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 44 ~~~~CpI~~~~m~dP-V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
.+..||||++.+.|| ++++|||+||+.||.+|+... ..||.|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhH
Confidence 456799999999998 778999999999999999744 58999988764
No 98
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.81 E-value=2e-09 Score=79.13 Aligned_cols=47 Identities=19% Similarity=0.288 Sum_probs=40.9
Q ss_pred CceeCcccccccCC----CeecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 44 GEFLCPVSGSLMAD----PVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 44 ~~~~CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
.++.||||++.|.+ |++++|||.|++.||.+|+... ..||.|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 45779999999977 8889999999999999999866 78999987653
No 99
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.81 E-value=2e-07 Score=101.12 Aligned_cols=263 Identities=8% Similarity=0.025 Sum_probs=184.0
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
..++.|...+.+.+..+|..|+..|..++...+.. ....-+++.+..+..+++..++..|+.+|..+...-...
T Consensus 87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--- 160 (588)
T 1b3u_A 87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--- 160 (588)
T ss_dssp GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence 34566666667788999999999999998764421 122345777778888888999999999998887653321
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT 386 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~ 386 (546)
.....++.+..++.+.++.+|..|+.+|..++..-.... .....++.|..++.+++..++..|+.+|..++..-..
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-- 236 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN--VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-- 236 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH--HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--
Confidence 123467888888888999999999999999876533221 2346788889999999999999999999988763221
Q ss_pred HHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036 387 KLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG 464 (546)
Q Consensus 387 ~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~ 464 (546)
......+++.+..++.+.+ ++..++.+|..++..... .......++.++.++.+ .+..++..|+.+|..++..
T Consensus 237 ~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 237 EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKD---CEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCC---CcHHHHHHHHHHHHHHHHH
Confidence 1122347788888887755 788899999888753211 12234568888888877 4688999999999988863
Q ss_pred C-hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 465 G-LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 465 ~-~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
- ...........+++.+..++.+.++.+|..|..+|..+.
T Consensus 312 ~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred hChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2 121111111235566667777777777777666665554
No 100
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.80 E-value=4.3e-08 Score=103.09 Aligned_cols=273 Identities=14% Similarity=0.078 Sum_probs=185.1
Q ss_pred chhHHHHHHhcCCC--CHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhhcCC
Q 009036 226 NEQEDYFVQKLKSP--QVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLIISR--YTNVQVNAVAALVNLSLEK 300 (546)
Q Consensus 226 ~~~i~~lv~~L~s~--~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~ 300 (546)
.+.++.++..+.++ ++..+..|+..|..++++. ...-.. .-..+++.++.+|.+. +..++..|+.++.++...-
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36788999999888 8999999999999998753 111011 1134788888888877 7999999999998865321
Q ss_pred c-hH-HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036 301 I-NK-MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERTQHDSALALY 376 (546)
Q Consensus 301 ~-nk-~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~ 376 (546)
. +. ......-.++.|...+.+.+.+++..++.+|..+...... ...+. ...++.++..+++.+..++..|+..+.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 1 10 0001111356666667777899999999999988754321 11111 156777778888889999999999988
Q ss_pred HhhcCchhH------------------HHHHh---cCcHHHHHHHHhCc---------hHHHHHHHHHHHhhCCcccHHH
Q 009036 377 HLSLVKSNR------------------TKLVK---LGSVNALLGMVNSG---------HMTGRVLLILGNLASCSDGRVA 426 (546)
Q Consensus 377 ~Ls~~~~n~------------------~~iv~---~Gav~~Lv~lL~~~---------~~~e~al~~L~nLa~~~e~r~~ 426 (546)
.++...... ..+++ ..+++.|+..+.+. .++..|..+|..|+..-. ..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~ 362 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD 362 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TT
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence 887642110 01111 23566677777431 378888888888875322 11
Q ss_pred HHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh--hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 427 VLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL--RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 427 i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~--~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
+. ..+++.+...|.+ .+...++.|+.+|..++.+.. .....+ ..+++.|+.++.+.++.+|..|.++|..++
T Consensus 363 ~~-~~~~~~l~~~l~~---~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 363 IV-PHVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp HH-HHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcC---CChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 22 2345666666665 468899999999999987532 121222 457899999999999999999999999998
Q ss_pred cCCc
Q 009036 505 GRAE 508 (546)
Q Consensus 505 ~~~~ 508 (546)
..-.
T Consensus 437 ~~~~ 440 (462)
T 1ibr_B 437 ELLP 440 (462)
T ss_dssp HHGG
T ss_pred Hhcc
Confidence 7543
No 101
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.77 E-value=2.5e-07 Score=100.35 Aligned_cols=263 Identities=11% Similarity=0.090 Sum_probs=172.2
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
..++.+...+++.++.+|..|+..|..++...... .....++|.|..++.+++..++..|+.+|..++...... .
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~- 238 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-D- 238 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-H-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH-H-
Confidence 34555666668889999999999999998653221 223467899999999999999999999998887642221 1
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc--hh
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK--SN 384 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~--~n 384 (546)
....+++.+..++.+.+..+|..|+.+|..++..-... ......++.++.++.++++.++..|+.+|..++..- +.
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence 22347888888998889999999999999887532111 123457889999999999999999999999987632 22
Q ss_pred HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 385 RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 385 ~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
+....-...++.+..++.+.+ ++..++.+|..++..-. .... ....++.+..++.+ .++.++..++.+|..++
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~-~~~l~p~l~~~l~d---~~~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNT-IEHLLPLFLAQLKD---ECPEVRLNIISNLDCVN 391 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHH-HHHTHHHHHHHHTC---SCHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHH-HHHHHHHHHHHhCC---CchHHHHHHHHHHHHHH
Confidence 222233457888888887754 77778777777764211 1111 12356777777765 35677777777776665
Q ss_pred cCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 463 HGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 463 ~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
..-.. ... ...+++.|..++.+.+.++|..+..+|..+.
T Consensus 392 ~~~~~-~~~--~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 392 EVIGI-RQL--SQSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp HHSCH-HHH--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HhcCH-HHH--HHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 42100 000 0113344444444444444444444444443
No 102
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.77 E-value=8.1e-09 Score=79.68 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=42.2
Q ss_pred CCCCceeCcccccccC---CCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 41 EPPGEFLCPVSGSLMA---DPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~---dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
....+..||||++.|. +|++++|||.||+.||.+|+... ..||.|+..+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccC
Confidence 4567788999999884 56789999999999999999864 369999887654
No 103
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.72 E-value=8.3e-09 Score=88.08 Aligned_cols=51 Identities=16% Similarity=0.036 Sum_probs=42.5
Q ss_pred CCCceeCcccccccCCCe------------------ecCCCccccHHHHHHHHhc----CCCCCCCCCCCCCC
Q 009036 42 PPGEFLCPVSGSLMADPV------------------VVSSGHTFERACAHVCKTL----GFTPTLVDGTTPDF 92 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dPV------------------~~~~G~ty~r~~i~~~~~~----~~~~cp~~~~~~~~ 92 (546)
.+.+..||||++.|.+|+ +++|||.||+.||.+|+.. ....||.|+..+..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 445679999999999987 7899999999999999963 34589999887643
No 104
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.72 E-value=8.5e-09 Score=84.32 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=43.1
Q ss_pred CCCceeCcccccccCC---CeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 42 PPGEFLCPVSGSLMAD---PVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
..++..||||++.|.+ +++++|||.||+.||.+|+.. +..||.|+..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4567889999999998 888999999999999999974 4589999887653
No 105
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.71 E-value=6.6e-09 Score=76.30 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=40.7
Q ss_pred CCceeCcccccccCC---CeecC-CCccccHHHHHHHHhcCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMAD---PVVVS-SGHTFERACAHVCKTLGFTPTLVDGTTP 90 (546)
Q Consensus 43 p~~~~CpI~~~~m~d---PV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 90 (546)
.++..||||++.|.+ |++++ |||.|++.||.+|++. ...||.|+..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 456789999999999 88887 9999999999999975 55899998764
No 106
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.70 E-value=2.6e-08 Score=111.32 Aligned_cols=188 Identities=14% Similarity=0.127 Sum_probs=142.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHH-HHccCCHHHHHHHHHHHhhccccc--chhhHH
Q 009036 271 LLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVD-VLMAGSAEAQEHACGAIFSLALDD--QNKTAI 347 (546)
Q Consensus 271 i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i 347 (546)
|.+++..|.++++..|..|+.+|.||+.++.++..+...++|..++. +|.+.+.+++..|+++|.+|+... +....+
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l 115 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHL 115 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHH
Confidence 45566779999999999999999999998899999999998887655 688889999999999999998764 557777
Q ss_pred hhcCChHHHHHhhccC--------------C-------HHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHHhCc-
Q 009036 348 GVLGALPPLLHLLKSD--------------S-------ERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSG- 404 (546)
Q Consensus 348 ~~~g~l~~Lv~lL~~~--------------~-------~~~~~~A~~aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~- 404 (546)
...|++++|..+|+.. . ..+..+++.+|++||.. .+....+...|.++.|+.+|.+.
T Consensus 116 ~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~ 195 (684)
T 4gmo_A 116 YRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISAD 195 (684)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcC
Confidence 8899999999998641 1 12334677889999874 44566777889999999998542
Q ss_pred ----hHHHHHHHHHHHhhCCc-ccHHHHHhCCcH---HHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 405 ----HMTGRVLLILGNLASCS-DGRVAVLDSGGV---ECLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 405 ----~~~e~al~~L~nLa~~~-e~r~~i~~~g~i---~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
++...|+.+|.+|+... +....+.+.+.. ..++.+.... ...+-.++++|+++.
T Consensus 196 ~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~----~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 196 IAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT----DPRAVMACGVLHNVF 257 (684)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS----CTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC----cHHHHHHHHHHHhHh
Confidence 38889999999999754 445556665532 3333333332 234567888998874
No 107
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.69 E-value=3.3e-09 Score=83.25 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCCceeCcccccccCCCeecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 42 PPGEFLCPVSGSLMADPVVVSSGHT-FERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
+.+++.||||++.++|||+++|||+ ||+.|+.+| ..||.|+..+..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 4467899999999999999999999 999999988 679999887643
No 108
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=1.4e-08 Score=79.72 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=42.4
Q ss_pred CCceeCcccccccCCC---eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMADP---VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 43 p~~~~CpI~~~~m~dP---V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
.++..||||++.|.+| ++++|||.||+.||.+|+... ..||.|+..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence 4667899999999998 788999999999999999753 589999887654
No 109
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.64 E-value=8.3e-09 Score=105.35 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=43.5
Q ss_pred ceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 45 EFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
...||||.+.+.|||+++|||+||..||.+|+......||.|+..+..
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 378999999999999999999999999999998667789999987654
No 110
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.63 E-value=2.4e-07 Score=101.75 Aligned_cols=265 Identities=12% Similarity=0.037 Sum_probs=181.0
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCc-hHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKI-NKML 305 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~-nk~~ 305 (546)
..++.+.+.|.+.++.+|..|+..|..+.+.+++ .+.+.++++.|..+|.++++.++..|+.+|..++.+.. ....
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 3456688899999999999999999999886554 22335789999999999999999999999999987532 2100
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc----C
Q 009036 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL----V 381 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~----~ 381 (546)
-...+.+..|+..|...++-.+...+.+|..+...++.. ....++.+..+|++.+..++..|++++.++.. .
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~ 273 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKD 273 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBT
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCC
Confidence 001124667777777888888888888888876443211 13467788888888899999999999999874 2
Q ss_pred chhHHHHHhcCcHHHHHHHHhC-chHHHHHHHHHHHhhCC-cc------------------c-HHH---H---HhCCcHH
Q 009036 382 KSNRTKLVKLGSVNALLGMVNS-GHMTGRVLLILGNLASC-SD------------------G-RVA---V---LDSGGVE 434 (546)
Q Consensus 382 ~~n~~~iv~~Gav~~Lv~lL~~-~~~~e~al~~L~nLa~~-~e------------------~-r~~---i---~~~g~i~ 434 (546)
++.... +-..+++.|+.++.. .+++..++..|..++.. ++ - +.+ + .+...+.
T Consensus 274 ~~~~~~-~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~ 352 (591)
T 2vgl_B 274 SDYYNM-LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIA 352 (591)
T ss_dssp TBSHHH-HHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHH
T ss_pred HHHHHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHH
Confidence 222222 223456677766653 33777788877777531 10 0 111 1 1222333
Q ss_pred ----HHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 435 ----CLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 435 ----~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
.|...+.+ .+.+.+..++.++..++....... ...++.|+.++....+.++..+...|+.+....
T Consensus 353 ~iv~~L~~~l~~---~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~ 421 (591)
T 2vgl_B 353 QVLAELKEYATE---VDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY 421 (591)
T ss_dssp HHHHHHHHHTTS---SCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHC
Confidence 34444444 467888889999988887543221 126789999999888888888888887776543
No 111
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.58 E-value=3.5e-07 Score=100.43 Aligned_cols=257 Identities=16% Similarity=0.097 Sum_probs=177.3
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
.....+++.+.+.+...+.-+.-.+..+++.+++... -++..|.+.|.++++.++..|+.+|.++.. ++...
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~-- 120 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITE-- 120 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHH--
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHH--
Confidence 5577888988999999988888888888876544321 235677777889999999999999998752 22221
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH-
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR- 385 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~- 385 (546)
..++.+...|.+.++.+|..|+.+|..+...... .+...+.++.|..+|.+.++.++..|+.+|..++......
T Consensus 121 ---~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 121 ---YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp ---HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred ---HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 2467788899999999999999999998764321 2223467899999999999999999999999998754311
Q ss_pred HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 386 TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 386 ~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
..-...+++..|+..+.+.+ .+...+.+|..++..++.- ....++.+..+|.+ .+..+...|+.++..+..
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~---~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSH---ANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCS---STTHHHHHHHHHHHHSCC
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcC---CChHHHHHHHHHHHHHhh
Confidence 00011134666666665433 6667788887777432211 12345566666665 457888999999988864
Q ss_pred C---C-hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 464 G---G-LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 464 ~---~-~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
. + +..+..+.. +.+.|+.++ +.++.+|..|...|..+...
T Consensus 269 ~~~~~~~~~~~~~~~--~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 269 LLPKDSDYYNMLLKK--LAPPLVTLL-SGEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp SCCBTTBSHHHHHHH--THHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHH--HHHHHHHHh-cCCccHHHHHHHHHHHHHHh
Confidence 2 2 223333322 456666655 47788888888888877653
No 112
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=1e-08 Score=84.33 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=47.1
Q ss_pred CceeCcccccccCCCeec---CCCccccHHHHHHHHhc----CC---CCCCC--CCCC--CCCCCCcccHHHHHHHHHHH
Q 009036 44 GEFLCPVSGSLMADPVVV---SSGHTFERACAHVCKTL----GF---TPTLV--DGTT--PDFSTVIPNLALKSTILNWC 109 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~---~~G~ty~r~~i~~~~~~----~~---~~cp~--~~~~--~~~~~l~pn~~l~~~i~~~~ 109 (546)
+.|.||||++.+.+|+++ +|||+||+.||.+|++. +. -.||. |+.. +.+. .+.++...+++++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~-~i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN-EIECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH-HHHHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH-HHHHHCCHHHHHHHH
Confidence 578899999999999886 79999999999997752 32 26888 8776 4432 222333355666665
Q ss_pred H
Q 009036 110 H 110 (546)
Q Consensus 110 ~ 110 (546)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 113
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2.3e-08 Score=78.56 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=39.7
Q ss_pred CCCceeCcccccccCCCeecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 42 PPGEFLCPVSGSLMADPVVVSSGHT-FERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
+.+++.||||++.++|||+++|||+ ||+.|+.++ ..||.|+..+..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 3567889999999999999999999 999999643 579999987654
No 114
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.52 E-value=1.5e-08 Score=88.60 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=49.5
Q ss_pred CCCceeCcccccccCCC-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 009036 42 PPGEFLCPVSGSLMADP-------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNL 99 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~ 99 (546)
.++.+.||||++.|.+| |+++|||+||..||.+|++.. .+||.|+..+...++.|++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcceeee
Confidence 35778899999999998 899999999999999999754 5899999998877777753
No 115
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.41 E-value=2.3e-06 Score=97.35 Aligned_cols=265 Identities=10% Similarity=0.086 Sum_probs=177.6
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-h-hhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCch---
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-E-TRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKIN--- 302 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~-~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~n--- 302 (546)
.++.+...|.+.++..+..|+..|..++.... . ....+ ..+++.|+..+.++++.++..++.+|..++..-..
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 44556666788899999999999999996532 2 22222 25788899999999999999999999988753110
Q ss_pred -HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc------hhhHHhhcCChHHHHHhhccC--CHHHHHHHHH
Q 009036 303 -KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ------NKTAIGVLGALPPLLHLLKSD--SERTQHDSAL 373 (546)
Q Consensus 303 -k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~------~k~~i~~~g~l~~Lv~lL~~~--~~~~~~~A~~ 373 (546)
...+ ...++.|+..|++. +.++..|+.+|.+++..-. ....+ ...++.|+.++.+. +..++..++.
T Consensus 448 ~~~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 448 PQQHL--PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp TTTTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred CHHHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 1111 23577888888775 8999999999988865311 11111 34577888888753 3678889999
Q ss_pred HHHHhhcCch-hHHHHHhcCcHHHHHHHHhCc-----------------hHHHHHHHHHHHhhCCcccHHHHHh--CCcH
Q 009036 374 ALYHLSLVKS-NRTKLVKLGSVNALLGMVNSG-----------------HMTGRVLLILGNLASCSDGRVAVLD--SGGV 433 (546)
Q Consensus 374 aL~~Ls~~~~-n~~~iv~~Gav~~Lv~lL~~~-----------------~~~e~al~~L~nLa~~~e~r~~i~~--~g~i 433 (546)
+|..+..... .....+. ..++.+++.+... .++..++.+|.+++..-.. .+.. ...+
T Consensus 523 al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~ 599 (861)
T 2bpt_A 523 ALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLM 599 (861)
T ss_dssp HHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHH
T ss_pred HHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHH
Confidence 9999876332 2222222 3566676666421 2566788888888753221 1111 2456
Q ss_pred HHHHHHHccCCCCCH-HHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 434 ECLVGMLRKGTELSE-STQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 434 ~~Lv~lL~~~~~~s~-~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
+.++..+... +. .+++.++.++..++.. .......+.. +++.|+..+.+.++.++..|..++..+.+..
T Consensus 600 ~~l~~~l~~~---~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 600 GLFFRLLEKK---DSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp HHHHHHHHST---TGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccC---CCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 7777778773 23 6788888888888753 2234444433 6788888888888889999999988777544
No 116
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.40 E-value=1.7e-05 Score=87.54 Aligned_cols=250 Identities=15% Similarity=0.133 Sum_probs=177.8
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC-chHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK-INKML 305 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~nk~~ 305 (546)
..++.+.+.|.+.++.++..|+..|..+.+.+++... ++++.|..+|.+.|+.++..|+.+|..++... +....
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence 4467788888999999999999999999987664322 67888888999999999999999999988653 21122
Q ss_pred HHhcCChHHHHHHHcc---------------CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc------cCC
Q 009036 306 IVRSGLVPPIVDVLMA---------------GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK------SDS 364 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~---------------~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~------~~~ 364 (546)
+ ...++.++.+|.. .++-.+...+.+|..+...+... ....++.|..++. +.+
T Consensus 217 ~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 217 F--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp H--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHH
T ss_pred H--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchH
Confidence 2 2578888888764 37888888999998887654221 1234455555543 224
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHcc
Q 009036 365 ERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRK 442 (546)
Q Consensus 365 ~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~ 442 (546)
..+...|+.++.++...+. +.. .++..|..+|.+. +++..|+..|..++... ..++. .....++..+.+
T Consensus 291 ~aV~~ea~~~i~~l~~~~~----l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~i~~~l~d 361 (618)
T 1w63_A 291 NAILYETVLTIMDIKSESG----LRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRSTIVDCLKD 361 (618)
T ss_dssp HHHHHHHHHHHHHSCCCHH----HHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhcCCCHH----HHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHHHHHHccC
Confidence 5677888889888755322 121 4678888888754 48888898888887531 22222 245567777776
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 443 GTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 443 ~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
.+..++..|+.+|..++... .... +++.|+..+.+.+..+|+.+...|..++..
T Consensus 362 ---~d~~Ir~~alelL~~l~~~~-nv~~------iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 362 ---LDVSIKRRAMELSFALVNGN-NIRG------MMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp ---SCHHHHHHHHHHHHHHCCSS-STHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred ---CChhHHHHHHHHHHHHcccc-cHHH------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 46889999999999998753 2222 346777777788888998888888888764
No 117
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.37 E-value=1.1e-05 Score=91.76 Aligned_cols=272 Identities=14% Similarity=0.080 Sum_probs=182.4
Q ss_pred chhHHHHHHhcCCC--CHHHHHHHHHHHHHHhccChhhhHHhh--cCChHHHHHHHHccC--CHHHHHHHHHHHHHhhcC
Q 009036 226 NEQEDYFVQKLKSP--QVHEVEEALISLRKLTRSREETRVSLC--TPRLLLALRSLIISR--YTNVQVNAVAALVNLSLE 299 (546)
Q Consensus 226 ~~~i~~lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~l~--~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~ 299 (546)
...++.++..+.++ ++..+..++..|..++..... ..+. -..+++.+...+.++ +..++..|+.+|.++...
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35788899999888 899999999999999875311 1122 145677788888776 689999999999887643
Q ss_pred -Cch-HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHHHHHHHHHH
Q 009036 300 -KIN-KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERTQHDSALAL 375 (546)
Q Consensus 300 -~~n-k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL 375 (546)
..+ .........++.+...+.+.+.+++..++.+|..+...... ...+ ....++.++..+.+.++.++..|+.++
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~al~~l 283 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 111 00011112566777777777899999999999988754321 2221 225678888888888899999999988
Q ss_pred HHhhcCchh---------------------HHHHHhcCcHHHHHHHHhC---------chHHHHHHHHHHHhhCCcccHH
Q 009036 376 YHLSLVKSN---------------------RTKLVKLGSVNALLGMVNS---------GHMTGRVLLILGNLASCSDGRV 425 (546)
Q Consensus 376 ~~Ls~~~~n---------------------~~~iv~~Gav~~Lv~lL~~---------~~~~e~al~~L~nLa~~~e~r~ 425 (546)
.+++..... ..+-.-...++.++..+.. ..++..|+.+|..|+..-..
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-- 361 (876)
T 1qgr_A 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-- 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--
T ss_pred HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--
Confidence 888753210 0000002356677777742 12777888888887753211
Q ss_pred HHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh--hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009036 426 AVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL--RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELM 503 (546)
Q Consensus 426 ~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~--~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L 503 (546)
.++ ...++.+...+.+ .+...++.|+.+|..++.+.. .....+. .+++.|+..+.+.++.+|..|.++|..+
T Consensus 362 ~~~-~~~l~~l~~~l~~---~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~--~~l~~l~~~l~d~~~~vr~~a~~~l~~~ 435 (876)
T 1qgr_A 362 DIV-PHVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTVGRI 435 (876)
T ss_dssp GGH-HHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHccC---CChHHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 111 1244555555554 468899999999999987542 2333332 3788999999999999999999999999
Q ss_pred hcCCc
Q 009036 504 KGRAE 508 (546)
Q Consensus 504 ~~~~~ 508 (546)
.....
T Consensus 436 ~~~~~ 440 (876)
T 1qgr_A 436 CELLP 440 (876)
T ss_dssp HHHCG
T ss_pred HHhCc
Confidence 87543
No 118
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.37 E-value=1.1e-06 Score=104.53 Aligned_cols=269 Identities=14% Similarity=0.106 Sum_probs=181.1
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
..+..++.++.+.+.+.|..|...|.+..+.+...-..-....+++.|+..|.+.+..+|..|+.+|.+++..-... .
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~- 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-Q- 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-H-
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-H-
Confidence 56788999999999999999999998876543110000011246788888898899999999999999988643221 1
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchh------hHHhhcCChHHHHHhhc-cCCHHHHHHHHHHHHHhh
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNK------TAIGVLGALPPLLHLLK-SDSERTQHDSALALYHLS 379 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k------~~i~~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~~Ls 379 (546)
. ..+++.|+..|.+.+..+|..|+.+|..++..-... ..-.....++.|+..+. +++..++..|+.+|..++
T Consensus 84 ~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1 236777888888888889999999998876432211 01112457888999998 478899999999999987
Q ss_pred cC-chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036 380 LV-KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVS 456 (546)
Q Consensus 380 ~~-~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~ 456 (546)
.. ...-.. .-...++.|+..|.+.+ +++.|+.+|..++...... + -...++.++..|.... +...+..++.
T Consensus 163 ~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~--~~~~r~~a~~ 236 (1230)
T 1u6g_C 163 SRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKND--SMSTTRTYIQ 236 (1230)
T ss_dssp HHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTC--SSCSCTTHHH
T ss_pred HHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCC--chhHHHHHHH
Confidence 52 110000 01235566666666643 8999999999998754321 2 2346788888887642 1234556677
Q ss_pred HHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 457 VLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 457 ~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
+|..++.. +......+ ..+++.++..+++.++.+|+.|..++..+...
T Consensus 237 ~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 77777652 21221111 34778888989888899999999888877654
No 119
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.36 E-value=1.5e-05 Score=87.89 Aligned_cols=249 Identities=12% Similarity=0.073 Sum_probs=181.3
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLI 306 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i 306 (546)
.+..+.+.|+++++.++..|++.|..+... + +. ..+++.+..+|.+.++.++..|+.++.++... ++..
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~--~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--- 177 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSS--E----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--- 177 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH--H----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG---
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH--H----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH---
Confidence 456778888999999999999999988742 1 22 35688899999999999999999999998763 4322
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch-hhHHhhcCChHHHHHhhcc---------------CCHHHHHH
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN-KTAIGVLGALPPLLHLLKS---------------DSERTQHD 370 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~l~~Lv~lL~~---------------~~~~~~~~ 370 (546)
.+.++.+..+|.+.++.++..|+.+|..++..+.. ...+ ...++.|+.+|.. .++-.+..
T Consensus 178 --~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 --EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp --GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred --HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 25778888889989999999999999998765322 1111 3678888887763 36778888
Q ss_pred HHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC------c--hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHcc
Q 009036 371 SALALYHLSLVKSNRTKLVKLGSVNALLGMVNS------G--HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRK 442 (546)
Q Consensus 371 A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~------~--~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~ 442 (546)
.+.+|..++..+... ....++.|..++.. . .+...|+.++..+...+.-+ . .++..|..+|.+
T Consensus 254 il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~----~-~a~~~L~~~L~~ 324 (618)
T 1w63_A 254 ILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR----V-LAINILGRFLLN 324 (618)
T ss_dssp HHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH----H-HHHHHHHHHHTC
T ss_pred HHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH----H-HHHHHHHHHHhC
Confidence 889999988754321 12355566666542 1 26677888888876543212 1 456788888876
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 443 GTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 443 ~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
.++.++..|+.+|..++...+ ..+. .....++..+.+.+..+|..|.++|..|....
T Consensus 325 ---~d~~vr~~aL~~L~~i~~~~p---~~~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 325 ---NDKNIRYVALTSLLKTVQTDH---NAVQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp ---SSTTTHHHHHHHHHHHHHHHH---HHHG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred ---CCCchHHHHHHHHHHHHhhCH---HHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence 357889999999998875322 2222 14567888889999999999999999998754
No 120
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.34 E-value=1.2e-05 Score=91.60 Aligned_cols=270 Identities=10% Similarity=0.038 Sum_probs=178.1
Q ss_pred hhHHHHHHhcCCC--CHHHHHHHHHHHHHHhccChhh-hHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cch
Q 009036 227 EQEDYFVQKLKSP--QVHEVEEALISLRKLTRSREET-RVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KIN 302 (546)
Q Consensus 227 ~~i~~lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~-r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~n 302 (546)
..++.++..|... +.+++..|++.|..+...-..+ ........+++.+..++.+.+.+++..++.+|..+... +..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4456677777766 6889999999999887532211 00111123677777788888999999999999988763 222
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-------------------hhhHHh--hcCChHHHHHhhc
Q 009036 303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-------------------NKTAIG--VLGALPPLLHLLK 361 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-------------------~k~~i~--~~g~l~~Lv~lL~ 361 (546)
-.......+++.++..+.+.++.++..|+.++..++.... ....+. -...++.++..|.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 2222333678888888888889999999988887764310 000110 0234666777775
Q ss_pred c-------CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcc--cHHHHHhC
Q 009036 362 S-------DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSD--GRVAVLDS 430 (546)
Q Consensus 362 ~-------~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e--~r~~i~~~ 430 (546)
. ++..+++.|+.+|..|+..... .++. .+++.+...+.+.+ +++.++.+|..++.... .....+ .
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~ 407 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I 407 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence 2 2446888888888888763221 1122 35566666666654 88899999999987432 111222 3
Q ss_pred CcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChh---hHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 431 GGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLR---FKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 431 g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~---~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
..++.|+..|.+ .+..++..|+.+|..++..... ....+. .+++.|+..+.+. +++++.|..+|..+...
T Consensus 408 ~~l~~l~~~l~d---~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~--~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 408 QAMPTLIELMKD---PSVVVRDTAAWTVGRICELLPEAAINDVYLA--PLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH--HHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHhCchhcccHHHHH--HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 478888888877 4688999999999999874221 111121 2567788887774 89999999999988764
No 121
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.33 E-value=3.1e-06 Score=81.64 Aligned_cols=178 Identities=18% Similarity=0.145 Sum_probs=132.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC--CchHHHHH
Q 009036 231 YFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE--KINKMLIV 307 (546)
Q Consensus 231 ~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~--~~nk~~i~ 307 (546)
.+.+.+.+.+|.+|..|+..|..+....+.....- -..+++.|..++. +.+..++..|+.+|..|+.. +.... ..
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence 46777889999999999999999987632211000 1246788888895 89999999999999998863 22212 12
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-Cc-h--
Q 009036 308 RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-VK-S-- 383 (546)
Q Consensus 308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~-~-- 383 (546)
..+++.|+..|.+.+..+|..|..+|..+...... ...++.|...|++.++.++..++..|..+.. .. .
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 23789999999999999999999999988664322 2357788888998999999999999999644 32 2
Q ss_pred hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036 384 NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS 419 (546)
Q Consensus 384 n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~ 419 (546)
....+ . ..++.|+.+|.+.. ++..|..+|..|+.
T Consensus 170 ~~~~l-~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL-K-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH-H-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHH-H-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 12222 2 47899999997644 88889988888875
No 122
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=3e-07 Score=73.22 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=39.1
Q ss_pred CceeCcccccccCC--------------Ceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 44 GEFLCPVSGSLMAD--------------PVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 44 ~~~~CpI~~~~m~d--------------PV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+... ..||.|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcch
Confidence 45569999999988 4555 599999999999999854 489999887643
No 123
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.30 E-value=2.1e-05 Score=89.33 Aligned_cols=271 Identities=14% Similarity=0.093 Sum_probs=180.4
Q ss_pred chhHHHHHHhcCCC-CHHHHHHHHHHHHHHhccChhhhHHhh--cCChHHHHHHHHccC--CHHHHHHHHHHHHHhhcC-
Q 009036 226 NEQEDYFVQKLKSP-QVHEVEEALISLRKLTRSREETRVSLC--TPRLLLALRSLIISR--YTNVQVNAVAALVNLSLE- 299 (546)
Q Consensus 226 ~~~i~~lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~l~--~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~- 299 (546)
.+.++.|+..+.++ ++..+..++..|..+++.-....+.+. ...+++.+...+.+. +..++..|+.+|.++...
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35678899999888 899999999999998875321100011 134677777778776 899999999999886432
Q ss_pred CchH-HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc--hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036 300 KINK-MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ--NKTAIGVLGALPPLLHLLKSDSERTQHDSALALY 376 (546)
Q Consensus 300 ~~nk-~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~ 376 (546)
..+- ........++.|...+.+.+.++|..++.+|..+..... ....+. ...++.++..+.+.+.+++..|+.++.
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~vr~~a~~~l~ 291 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEFWS 291 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1110 000012256677777888899999999999988865422 122111 145667777788888999999999998
Q ss_pred HhhcCchh------------------HHHHHhcCcHHHHHHHHhC---------chHHHHHHHHHHHhhCCcccHHHHHh
Q 009036 377 HLSLVKSN------------------RTKLVKLGSVNALLGMVNS---------GHMTGRVLLILGNLASCSDGRVAVLD 429 (546)
Q Consensus 377 ~Ls~~~~n------------------~~~iv~~Gav~~Lv~lL~~---------~~~~e~al~~L~nLa~~~e~r~~i~~ 429 (546)
.++..... -...+ ..+++.|+..+.+ ..++..+..+|..|+..-. ..++
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~- 367 (861)
T 2bpt_A 292 TICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL- 367 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-
T ss_pred HHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-
Confidence 88764211 01111 3467788888763 1377788888888875321 0111
Q ss_pred CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036 430 SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG--LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 430 ~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~--~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 506 (546)
...++.+...+.+ .+...++.|+.+|..++.+. ......+. .+++.|+..+.+.++.+|..+.++|..++..
T Consensus 368 ~~l~~~l~~~l~~---~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 368 EPVLEFVEQNITA---DNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 1233444455554 45789999999999998753 22333333 3678888888999999999999999888764
No 124
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.27 E-value=3.8e-07 Score=68.93 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=40.9
Q ss_pred CceeCcccccccCCCeec--CCCcc-ccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 44 GEFLCPVSGSLMADPVVV--SSGHT-FERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~--~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
.+..|+||++-++|||++ +|||. ||..|+.+|++.+ ..||.|++++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhh
Confidence 456799999999999998 99998 9999999988654 68999998764
No 125
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.26 E-value=6.1e-06 Score=86.47 Aligned_cols=269 Identities=9% Similarity=0.010 Sum_probs=175.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhhcCC--chHHH
Q 009036 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR--YTNVQVNAVAALVNLSLEK--INKML 305 (546)
Q Consensus 230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~--~nk~~ 305 (546)
..++..|.+.+..+ ..+...|..+++...... .-.++++.|+..+.++ +..+++.|+.+|..++.+. +.-..
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 168 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 168 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh
Confidence 45777787777667 778888888876531110 1267999999999988 9999999999999988632 11111
Q ss_pred HHhcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccc-h-hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036 306 IVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQ-N-KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~-~-k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 381 (546)
.. ..+++.++..|.+. +..+|..|+.++.++...-. . .......-.++.|...+.+.+.+++..++.+|..++..
T Consensus 169 ~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 169 KS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp GH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 11 23678888888887 79999999999988643211 1 00001111356666677778899999999999998763
Q ss_pred chhH-HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHH------------------HHh---CCcHHHHH
Q 009036 382 KSNR-TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVA------------------VLD---SGGVECLV 437 (546)
Q Consensus 382 ~~n~-~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~------------------i~~---~g~i~~Lv 437 (546)
.... ...+..++++.++..+.+.+ ++..++..+..++........ +.+ ...++.++
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~ 327 (462)
T 1ibr_B 248 YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327 (462)
T ss_dssp CGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH
Confidence 2211 01111156777777776543 788888888888754211110 111 23456666
Q ss_pred HHHccCC----CCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 438 GMLRKGT----ELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 438 ~lL~~~~----~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
+.|.... ..+...+..|+.+|..++..-.+ .++. .+++.+..++.+.+.++|+.|..+|..+....
T Consensus 328 ~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 397 (462)
T 1ibr_B 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397 (462)
T ss_dssp HHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC
Confidence 6665421 12235788888888888763221 1111 25677888888999999999999999999744
No 126
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.26 E-value=4.6e-07 Score=68.66 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=41.6
Q ss_pred CCceeCcccccccCCCeec--CCCcc-ccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMADPVVV--SSGHT-FERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~--~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
.++..|+||++-++|+|++ +|||. ||..|+.+|++. +..||.|++++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3566899999999999988 99999 899999999874 457999998764
No 127
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.25 E-value=1.7e-07 Score=74.26 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=39.9
Q ss_pred CCCceeCcccccccCCCeecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 42 PPGEFLCPVSGSLMADPVVVSSGHT-FERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
+.++..|+||++.++|||+++|||. ||+.|+.+|. .||.|+..+..
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 4566789999999999999999999 9999998763 89999987653
No 128
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.20 E-value=2.1e-07 Score=94.46 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=40.6
Q ss_pred CCCceeCcccccccCCCeecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 42 PPGEFLCPVSGSLMADPVVVSSGHT-FERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
+.+++.||||++.+.|||+++|||+ ||+.|+.+| ..||.|+.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3467899999999999999999999 999999988 579999887653
No 129
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=1.6e-06 Score=66.43 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=39.7
Q ss_pred CCCceeCcccccccCCCeecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 42 PPGEFLCPVSGSLMADPVVVSSGHT-FERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
-.++..|+||++-.+|||+++|||. ||..|+.+ ...||.|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3467889999999999999999999 99999974 3589999987654
No 130
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.12 E-value=1.8e-06 Score=72.31 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=38.3
Q ss_pred ceeCcccccccCCC------------------eecCCCccccHHHHHHHHhcCCCCCCCCCCCC
Q 009036 45 EFLCPVSGSLMADP------------------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTP 90 (546)
Q Consensus 45 ~~~CpI~~~~m~dP------------------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 90 (546)
+-.|+||++-|.+| ++++|||.|.+.||.+|+.. +..||.|+...
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~ 99 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 99 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcc
Confidence 45699999999987 34799999999999999985 56899998764
No 131
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.12 E-value=3.6e-05 Score=72.44 Aligned_cols=185 Identities=11% Similarity=0.084 Sum_probs=142.0
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchH
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINK 303 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk 303 (546)
++.+..++..|...+..++..|+..|.++.+.-+ ..+.... ..+++.++.++.+.|..+.-.|+.+|..|-.+ +-..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 4677888999999999999999999999998733 2333333 35799999999999999999999999988775 4444
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036 304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS 383 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~ 383 (546)
..+.. .+..|..++.+++.-++.+|+..|..|......+ +.+..|+.++.+.+.+++..|+.+|.+++...+
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 43332 4678899999999999999999999994333232 355677888888999999999999999987543
Q ss_pred hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCc
Q 009036 384 NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCS 421 (546)
Q Consensus 384 n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~ 421 (546)
... +-.+++.-+-++|.+.+ +.+.|+.+|..+.+.+
T Consensus 183 D~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 183 DSG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SCC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 211 11235555677777655 8999999999998754
No 132
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.2e-05 Score=76.28 Aligned_cols=186 Identities=12% Similarity=0.079 Sum_probs=131.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHH-HhccChhhhHHhhc-CChHHHHHHHH-ccCCHHHHHHHHHHHHHhhcC---CchHHH
Q 009036 232 FVQKLKSPQVHEVEEALISLRK-LTRSREETRVSLCT-PRLLLALRSLI-ISRYTNVQVNAVAALVNLSLE---KINKML 305 (546)
Q Consensus 232 lv~~L~s~~~~~~~~Al~~L~~-La~~~~~~r~~l~~-~g~i~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~---~~nk~~ 305 (546)
+-..|.+.+|.+|.+|+..|.. +...++.....-.+ ..++..|...+ ...+..++..|+.+|..|+.. +.....
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4566789999999999999999 87543221100111 24677888888 678999999999999998853 122201
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh--hcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG--VLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS 383 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~ 383 (546)
... -+++.++..+++....++..+..+|..++..-+. .... -...++.|+..|++.++.++..++.+|..+.....
T Consensus 101 y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 221 2689999999998999999988888887653211 0011 12367788889998999999999999998876433
Q ss_pred h---HH-HHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036 384 N---RT-KLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS 419 (546)
Q Consensus 384 n---~~-~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~ 419 (546)
. .. ..+....++.|.+++.+.+ +++.|..+|..++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1 11 2222468999999998755 89988888887764
No 133
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.09 E-value=3.3e-05 Score=72.71 Aligned_cols=219 Identities=16% Similarity=0.107 Sum_probs=155.3
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-C-chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-hhh
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLE-K-INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-NKT 345 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~-~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~ 345 (546)
+.+..|..+|...|..++.+++.+|..+-.. + .-+..+.+ ..++.++.++++.+..+...|+.+|..|..+-+ ...
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 4588899999999999999999999998875 2 33333333 489999999999999999999999998876542 222
Q ss_pred HHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCccc
Q 009036 346 AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDG 423 (546)
Q Consensus 346 ~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~ 423 (546)
.+. ..+..|..++.++++-....|+..|..|...... -+++..+..++.+.+ ++..++.+|.+++...+.
T Consensus 112 ~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 222 2567888888989999999999999998332211 146777888886655 888899999999874432
Q ss_pred HHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHHCCcHHHHHHHH-hcCCHHHHHHHHHHH
Q 009036 424 RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG--LRFKGLAAAAGMAEVLMRME-RVGSEHVKEKAKRML 500 (546)
Q Consensus 424 r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~--~~~~~~~~~~g~v~~L~~ll-~~~s~~~k~~A~~lL 500 (546)
..-+ .+.+.-+-.+|.+ .++..++.|+.+|..+.... +.....+. ++....-.+. ..|.|.++.+|..+-
T Consensus 184 ~~i~--~~I~~eI~elL~~---eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 184 SGHL--TLILDEIPSLLQN---DNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp CCCG--GGTTTTHHHHHTC---SCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 2211 1344455666777 57999999999999998742 12222111 1222222344 688999999998765
Q ss_pred HHh
Q 009036 501 ELM 503 (546)
Q Consensus 501 ~~L 503 (546)
..+
T Consensus 257 ~~l 259 (265)
T 3b2a_A 257 DLI 259 (265)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 134
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.05 E-value=0.0002 Score=78.85 Aligned_cols=253 Identities=12% Similarity=0.099 Sum_probs=171.5
Q ss_pred hhHHHHHHhc--CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036 227 EQEDYFVQKL--KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM 304 (546)
Q Consensus 227 ~~i~~lv~~L--~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~ 304 (546)
..++.+.+.| .+.++.++.+|+-.+..+.+.+++. +...++++.|..+|.+.|+.++..|+.+|..++.+...
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-- 220 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE-- 220 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--
Confidence 4456777888 8889999999999999999876532 22258999999999999999999999999988764321
Q ss_pred HHHhcCChHHHHHHHc----cC-------------CHHHHHHHHHHHhhccccc--chhhHHhhcCChHHHHHhh-----
Q 009036 305 LIVRSGLVPPIVDVLM----AG-------------SAEAQEHACGAIFSLALDD--QNKTAIGVLGALPPLLHLL----- 360 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~----~~-------------~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~l~~Lv~lL----- 360 (546)
.+ ...++.++..|. .+ ++-.+.....+|..+...+ +.+..+.+ .+..++..+
T Consensus 221 ~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~k 296 (621)
T 2vgl_A 221 EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPK 296 (621)
T ss_dssp HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCS
T ss_pred HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcc
Confidence 11 124455554443 22 5778888999998887543 22332222 334444332
Q ss_pred ----ccCCH--HHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCCcccHHHHHhCCc
Q 009036 361 ----KSDSE--RTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNLASCSDGRVAVLDSGG 432 (546)
Q Consensus 361 ----~~~~~--~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~~e~r~~i~~~g~ 432 (546)
++.+. .+.-+|+.++.++...++... .++..|..+|.+. +++..++..|..++........+. ..
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~~ 369 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--TH 369 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--TT
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--HH
Confidence 22222 677788888888864332222 3677788888643 488899999999987543223332 34
Q ss_pred HHHHHHHHc-cCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 433 VECLVGMLR-KGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 433 i~~Lv~lL~-~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
...++..|. + .+..++..|+.+|..++..+ .... ++..|...+...+...++.+...+..++.
T Consensus 370 ~~~i~~~L~~d---~d~~Ir~~aL~lL~~l~~~~-Nv~~------Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 370 IETVINALKTE---RDVSVRQRAVDLLYAMCDRS-NAQQ------IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHTTC---CCHHHHHHHHHHHHHHCCHH-HHHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccC---CCHhHHHHHHHHHHHHcChh-hHHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 567777787 5 46889999999999998532 2222 45677777777888888888877777763
No 135
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.04 E-value=2.9e-05 Score=92.36 Aligned_cols=223 Identities=12% Similarity=0.085 Sum_probs=155.1
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCch----
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKIN---- 302 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~n---- 302 (546)
..+..+++.|.+.++++|..|+..|..++..... ..+ ..+++.|+..|.+++..++..|+.+|..++..-..
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 4567888889989999999999999999875432 111 24677888888888888999999999888753211
Q ss_pred ---HHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccc--hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036 303 ---KMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQ--NKTAIGVLGALPPLLHLLKSDSERTQHDSALALY 376 (546)
Q Consensus 303 ---k~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~ 376 (546)
.... -...++.|+..+. +.+..++..|+.+|..++.... ... .....++.|+..|.+.+..++..|+.+|.
T Consensus 124 ~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 124 SALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALG 200 (1230)
T ss_dssp CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1111 2347899999998 5789999999999998874311 111 11346777888888888999999999999
Q ss_pred HhhcCchhHHHHHhcCcHHHHHHHHhCc---hHHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHH
Q 009036 377 HLSLVKSNRTKLVKLGSVNALLGMVNSG---HMTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQ 451 (546)
Q Consensus 377 ~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~---~~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~ 451 (546)
.++...... + -...++.|+..|.+. ..+..++.+|..++..... .+.. ...++.++..+.. .++.++
T Consensus 201 ~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d---~~~~vR 272 (1230)
T 1u6g_C 201 HLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNV---DDDELR 272 (1230)
T ss_dssp HHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSS---CCTTTH
T ss_pred HHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcC---CCHHHH
Confidence 998754322 2 224688888877543 2455567777766643211 2322 4578888888876 356788
Q ss_pred HHHHHHHHHHhcC
Q 009036 452 ESCVSVLYALSHG 464 (546)
Q Consensus 452 e~Av~~L~~L~~~ 464 (546)
+.++.+|..++..
T Consensus 273 ~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 273 EYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888763
No 136
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.98 E-value=0.00068 Score=74.60 Aligned_cols=257 Identities=14% Similarity=0.122 Sum_probs=165.2
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
.....+++.+.+.+...+.-+.-.+..+++.+++.- .+ ++..+.+-|.++++.++..|+.+|.++... .+
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~-~L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-----e~ 143 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI-RL----INNAIKNDLASRNPTFMGLALHCIANVGSR-----EM 143 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH-HH----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-----HH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH-HH----HHHHHHHhcCCCCHHHHHHHHHHhhccCCH-----HH
Confidence 346788888899999888888888888887765332 11 356677778899999999999999998541 13
Q ss_pred HhcCChHHHHHHH--ccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh
Q 009036 307 VRSGLVPPIVDVL--MAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN 384 (546)
Q Consensus 307 ~~~g~l~~Lv~lL--~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n 384 (546)
.+ ..++.+...| .+.++.+|..|+.++..+...+. ..+...+.++.|.++|.+.++.++..|+.+|..++.....
T Consensus 144 ~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 144 AE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp HH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 33 3678888999 77899999999999998876432 1122247899999999988999999999999999874321
Q ss_pred HHHHHhcCcHHHHHH----HHhC---------------chHHHHHHHHHHHhhCCc--ccHHH-----------------
Q 009036 385 RTKLVKLGSVNALLG----MVNS---------------GHMTGRVLLILGNLASCS--DGRVA----------------- 426 (546)
Q Consensus 385 ~~~iv~~Gav~~Lv~----lL~~---------------~~~~e~al~~L~nLa~~~--e~r~~----------------- 426 (546)
. + ...++.+++ ++.. +-.+-..+.+|..++..+ +.+..
T Consensus 221 ~--~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 221 E--F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPK 296 (621)
T ss_dssp H--H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred H--H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcc
Confidence 0 0 012222222 2211 113333333333333211 11110
Q ss_pred --------------------HHh--------CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcH
Q 009036 427 --------------------VLD--------SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMA 478 (546)
Q Consensus 427 --------------------i~~--------~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v 478 (546)
++. ..++..|..+|.+ .++..+..|+..|..++...+. ...+. ...
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~---~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~ 370 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQH---RETNLRYLALESMCTLASSEFS-HEAVK--THI 370 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSC---SCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTH
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHhccCc-HHHHH--HHH
Confidence 000 0134445555543 3467777777777777764321 11222 245
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHhhcC
Q 009036 479 EVLMRMER-VGSEHVKEKAKRMLELMKGR 506 (546)
Q Consensus 479 ~~L~~ll~-~~s~~~k~~A~~lL~~L~~~ 506 (546)
..++..+. +.+..+|..|..+|..|...
T Consensus 371 ~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 371 ETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 66777777 88899999999999888754
No 137
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.95 E-value=6.4e-07 Score=77.97 Aligned_cols=119 Identities=9% Similarity=0.006 Sum_probs=88.7
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
..++.++..|++.++.+|..|+..|..+.. ..++.|+.+|.++++.++..|+.+|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 456778888888888888887777654432 126899999999999999999999998752
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYH 377 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~ 377 (546)
...++.|+..|.+.++.+|..|+.+|..+. ...+++.|+.+|++++..++..|+.+|.+
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 235888999999999999999999998874 23468889999988889999999888764
No 138
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.93 E-value=0.0013 Score=59.61 Aligned_cols=213 Identities=14% Similarity=0.147 Sum_probs=147.8
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC-Cch
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE-KIN 302 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~-~~n 302 (546)
+.+.+++++..|...-|.+|..|+..|..+++.-++....+ +..|+.+++ +.....-.....+++.++.. ++-
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 45678899999999999999999999999998876554433 344555554 55556656677778777652 222
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc
Q 009036 303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK 382 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~ 382 (546)
- .+.+|.|..-++-|+++++.+...+|..++..+.. ...+.+..+..+|.+.+..-+-.|+..|..| .
T Consensus 105 v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~al---G 172 (253)
T 2db0_A 105 V-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAM---G 172 (253)
T ss_dssp H-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC---C
T ss_pred H-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHH---h
Confidence 2 13567777777788999999999999988754321 1134567788888888766666666555544 6
Q ss_pred hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036 383 SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYA 460 (546)
Q Consensus 383 ~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~ 460 (546)
+|..+-+.- .+|.|..+|.+++ ++..|+.+|.+|+.....-. +.+...+....+.|..++......|..
T Consensus 173 en~~~yv~P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklR--------kii~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 173 ENSFKYVNP-FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLR--------KVVIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp TTTHHHHGG-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHH--------HHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccCccccCc-chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHH--------HHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 666666655 7899999999877 88899999999997544322 222333333333567777777777766
Q ss_pred Hhc
Q 009036 461 LSH 463 (546)
Q Consensus 461 L~~ 463 (546)
+..
T Consensus 244 l~l 246 (253)
T 2db0_A 244 LLL 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 139
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.90 E-value=1.4e-06 Score=75.82 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=87.6
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHH
Q 009036 268 PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAI 347 (546)
Q Consensus 268 ~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i 347 (546)
...++.|+.+|.++++.++..|+.+|.++.. ..++.|+..|++.++.+|..|+.+|..+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 4567888899998888888888888776532 136899999999999999999999998742
Q ss_pred hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHH
Q 009036 348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGN 416 (546)
Q Consensus 348 ~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~n 416 (546)
..+++.|+.+|.+.++.++..|+++|.++.. ..+++.|+.++.+.+ ++..|+.+|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3468899999999999999999999998852 246888999997654 77778777654
No 140
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.88 E-value=0.00023 Score=68.35 Aligned_cols=183 Identities=11% Similarity=0.023 Sum_probs=131.7
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHhhcccc-cchh-hHHhhcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhcCchhHHHH
Q 009036 312 VPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNK-TAIGVLGALPPLLHLLK-SDSERTQHDSALALYHLSLVKSNRTKL 388 (546)
Q Consensus 312 l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k-~~i~~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~~Ls~~~~n~~~i 388 (546)
.+.+.+.+.+.+...|..|+..|..+... +... ..+ ...++.|...|. +.+..++..|+.+|..|+..-.....-
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34577888888999999999999888654 2211 001 235677788884 889999999999999998632111111
Q ss_pred HhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-C
Q 009036 389 VKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG-G 465 (546)
Q Consensus 389 v~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~-~ 465 (546)
.-...++.|++.+.+.. +++.+..+|..++.... -. ..++.|...|.+ .++.+++.++.+|..+... .
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~-----~ll~~l~~~l~~---~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE-----AQQESIVESLSN---KNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH-----HHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH-----HHHHHHHHHHcC---CChHHHHHHHHHHHHHHHHcC
Confidence 22237888888888754 88999999999887532 11 256777777776 4689999999999996543 2
Q ss_pred hh--hHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 466 LR--FKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 466 ~~--~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
.. ....+. .+++.|+.++.+.++++|..|..+|..|...-
T Consensus 166 ~~~~~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 166 PTALNKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp GGGCCHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 22 233333 27899999999999999999999999987544
No 141
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.85 E-value=0.00044 Score=72.22 Aligned_cols=232 Identities=12% Similarity=0.064 Sum_probs=153.1
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHHhhcCCchHHHHHhcC--ChHHHHHHHcc---------------C--CHHHHHHHHH
Q 009036 273 ALRSLIIS-RYTNVQVNAVAALVNLSLEKINKMLIVRSG--LVPPIVDVLMA---------------G--SAEAQEHACG 332 (546)
Q Consensus 273 ~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g--~l~~Lv~lL~~---------------~--~~~~~~~Aa~ 332 (546)
.++..|.. .+...+..++.+|..|...++.|..+.+.+ .++.++.+++. + ..+++-+++-
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 34445554 345667778888999988899998887543 46777665541 1 3567889999
Q ss_pred HHhhcccccchhhHHhhcCCh--HHHHHhhcc-CCHHHHHHHHHHHHHhhcCc-----hhHHHH-HhcCcHHHHHHHHhC
Q 009036 333 AIFSLALDDQNKTAIGVLGAL--PPLLHLLKS-DSERTQHDSALALYHLSLVK-----SNRTKL-VKLGSVNALLGMVNS 403 (546)
Q Consensus 333 ~L~~Ls~~~~~k~~i~~~g~l--~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~-----~n~~~i-v~~Gav~~Lv~lL~~ 403 (546)
+++.|+..++....+...+.. ..|+.+++. ...++.+.++.+|.||.... .....+ +..++ ..+++.|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999998776666655533 677777776 46889999999999998754 122323 33345 445555543
Q ss_pred -----chHHHH-------HHHHHHHhhC---------------Cc---------ccHHHHHhC--CcHHHHHHHHccCC-
Q 009036 404 -----GHMTGR-------VLLILGNLAS---------------CS---------DGRVAVLDS--GGVECLVGMLRKGT- 444 (546)
Q Consensus 404 -----~~~~e~-------al~~L~nLa~---------------~~---------e~r~~i~~~--g~i~~Lv~lL~~~~- 444 (546)
+++.+. --..+..|++ .| ||...+.+. ..+..|+++|.+..
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 222222 1111122221 11 122234332 27789999997410
Q ss_pred ------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 445 ------ELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 445 ------~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
..++....-|+.=+..+++..+..+.++.+.|+-..+++|+.+.++++|..|..+++.+-.
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 0235555666666777777667888899999999999999999999999999999977643
No 142
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=1.8e-05 Score=62.60 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=41.5
Q ss_pred CCceeCccccccc--CCCeecCCC-----ccccHHHHHHHHhcC-CCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLM--ADPVVVSSG-----HTFERACAHVCKTLG-FTPTLVDGTTPDF 92 (546)
Q Consensus 43 p~~~~CpI~~~~m--~dPV~~~~G-----~ty~r~~i~~~~~~~-~~~cp~~~~~~~~ 92 (546)
.++..|+||++-+ .+|++++|+ |.|-+.||.+|+... ...||.|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3556799999877 579999996 999999999999864 4689999987654
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.81 E-value=0.00026 Score=70.50 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=120.2
Q ss_pred HHHhhccCCHHHHHHHHHHHHH-hhcCchhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCCcccHHHHHhC-C
Q 009036 356 LLHLLKSDSERTQHDSALALYH-LSLVKSNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNLASCSDGRVAVLDS-G 431 (546)
Q Consensus 356 Lv~lL~~~~~~~~~~A~~aL~~-Ls~~~~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~~e~r~~i~~~-g 431 (546)
+++.|.+.+.+.++.++.-|.. +..+..-..+++..+++..|+.++... +.+.++|.+|.+|-....|-..++++ .
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3455566778888888888888 556778899999999999999999764 49999999999999999999999864 5
Q ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHH--------HCC--cHHHHHHHHh---cCCHHHHHHHHH
Q 009036 432 GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAA--------AAG--MAEVLMRMER---VGSEHVKEKAKR 498 (546)
Q Consensus 432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~--------~~g--~v~~L~~ll~---~~s~~~k~~A~~ 498 (546)
.|..|..++.+ ....+...|+.+|..+|..++....++. ..| -...|+.+++ +++..++.+|..
T Consensus 203 fI~~lyslv~s---~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 203 TIQWLYTLCAS---LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHcC---ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 88999999886 4688999999999999986543332222 222 2578999998 789999999999
Q ss_pred HHHHhhcCCcc
Q 009036 499 MLELMKGRAEE 509 (546)
Q Consensus 499 lL~~L~~~~~~ 509 (546)
+|-.+-...++
T Consensus 280 LIN~lL~~apd 290 (339)
T 3dad_A 280 LINKTLAALPD 290 (339)
T ss_dssp HHHHHHHHCSS
T ss_pred HHHHHHhcCCC
Confidence 99777655543
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.76 E-value=0.00042 Score=69.02 Aligned_cols=154 Identities=14% Similarity=0.056 Sum_probs=124.6
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
-....++.+|.+++.++...++..|..+..++...-..+++.+++..|+......+.+.+..++.+|.+|-.+......+
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 45678999999899999999999999965566778888899999999999999999999999999999998887777666
Q ss_pred Hh-cCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-hhhHHhh--------c--CChHHHHHhhc---cCCHHHHHHH
Q 009036 307 VR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-NKTAIGV--------L--GALPPLLHLLK---SDSERTQHDS 371 (546)
Q Consensus 307 ~~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~--------~--g~l~~Lv~lL~---~~~~~~~~~A 371 (546)
++ ...|..|..++.+....+...|+.+|..++...+ +...+.. . .-+..|+.+|. ..+.+++.+|
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 64 4678888888888889999999999999877654 3222221 1 24789999997 5688998888
Q ss_pred HHHHHHhhc
Q 009036 372 ALALYHLSL 380 (546)
Q Consensus 372 ~~aL~~Ls~ 380 (546)
...|-.+..
T Consensus 278 mtLIN~lL~ 286 (339)
T 3dad_A 278 VTLINKTLA 286 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 876555543
No 145
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.73 E-value=4.4e-06 Score=70.98 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred eeCcccccccCCCe-----------------e-cCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 46 FLCPVSGSLMADPV-----------------V-VSSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 46 ~~CpI~~~~m~dPV-----------------~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
-.|+||++-|.+|. + ++|||.|++.||.+|+.. +..||.|+....
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 36999999999853 2 489999999999999985 558999987643
No 146
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.57 E-value=0.011 Score=53.67 Aligned_cols=213 Identities=14% Similarity=0.137 Sum_probs=148.0
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhh
Q 009036 268 PRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKT 345 (546)
Q Consensus 268 ~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~ 345 (546)
..++..++.+|+.+-..+|.+|+.+|.+++.. ++-... .+..|+.+++ +....+...-+.++..++.....
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe-- 103 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE-- 103 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--
Confidence 45788899999999999999999999999875 444433 3445666665 44667766777788777653211
Q ss_pred HHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHH
Q 009036 346 AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRV 425 (546)
Q Consensus 346 ~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~ 425 (546)
+. .+.+|.|+.=.+-++++.+.+...+|-.+....+. .-.+++.-+..++.+++ ...-+.+|.-+..-.++..
T Consensus 104 -~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd-~~Dkl~aLnFi~alGen~~ 176 (253)
T 2db0_A 104 -LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKN-REDKLTALNFIEAMGENSF 176 (253)
T ss_dssp -HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSS-HHHHHHHHHHHHTCCTTTH
T ss_pred -HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhccCc
Confidence 11 23556666666668999999999999998874321 22245667888888876 3333444444444333332
Q ss_pred HHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036 426 AVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504 (546)
Q Consensus 426 ~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~ 504 (546)
..+ ...+|.|..+|.. .+.-++..|+.+|.+++.-++..+.++ ...++-+.+.++-++.+..+.|..|.
T Consensus 177 ~yv-~PfLprL~aLL~D---~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 177 KYV-NPFLPRIINLLHD---GDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHH-GGGHHHHHGGGGC---SSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ccc-CcchHHHHHHHcC---cchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 222 3578999999988 568999999999999999887777754 34455567778888888888887665
No 147
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.44 E-value=0.0041 Score=63.17 Aligned_cols=246 Identities=13% Similarity=0.065 Sum_probs=151.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV 307 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~ 307 (546)
.+..+++.+.+.+...+.-..-.+..+++..++. .+ ++..|.+-+.++++-++-.|+.+|.++...+-..
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--iL----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~---- 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--II----VTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ---- 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--GG----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--HH----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH----
Confidence 3455678889999988888888888888874332 12 3677888888999999999999999986443211
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHH
Q 009036 308 RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTK 387 (546)
Q Consensus 308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~ 387 (546)
...+.+...|.+.++.+|..|+-+...|.... .+.+ .+.+..+-+++.+.++-++-+|+.+|+.++..+..
T Consensus 139 --~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--- 209 (355)
T 3tjz_B 139 --AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--- 209 (355)
T ss_dssp --HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---
Confidence 23455666778889999999999988876543 2222 36889999999999999999999999999875421
Q ss_pred HHhcCcHHHHHHHHhCch-----HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 388 LVKLGSVNALLGMVNSGH-----MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 388 iv~~Gav~~Lv~lL~~~~-----~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
++..|+..+..+. .+-..+.++..++..++.. .....+..|...|++ .++.+.-.|+.++..+.
T Consensus 210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~---~~~aVvyEa~k~I~~l~ 278 (355)
T 3tjz_B 210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRN---KHEMVVYEAASAIVNLP 278 (355)
T ss_dssp -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCC---SSHHHHHHHHHHHTC--
T ss_pred -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcC---CChHHHHHHHHHHHhcc
Confidence 3445555554431 2222333333333322000 112344555555655 56888888888887775
Q ss_pred cCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 463 HGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 463 ~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
..+.. .. ..++..|..++.+.++.+|=.|...|..+....+
T Consensus 279 ~~~~~---~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 279 GCSAK---EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp --------------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred CCCHH---HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence 42211 11 2246778888888889999888888877765443
No 148
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.44 E-value=0.01 Score=67.23 Aligned_cols=201 Identities=13% Similarity=0.076 Sum_probs=138.0
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhhcccccchhhHH
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDDQNKTAI 347 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i 347 (546)
.+++.|..+|..++..+.+.|+.+|..+.....|.. ++..|+..+.+ .+..++..++..|..+..
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~-------- 537 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINY-------- 537 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------
Confidence 357888888888887777777777776654444433 34566665543 477888888888887643
Q ss_pred hhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC---chHHHHHHHHHHHhhCCccc
Q 009036 348 GVLGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS---GHMTGRVLLILGNLASCSDG 423 (546)
Q Consensus 348 ~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~---~~~~e~al~~L~nLa~~~e~ 423 (546)
+....++.+++.|.. .++-++..++.++.--+....|. .+|+.|++.+.+ ..++..|+..|..++...+
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~- 610 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY- 610 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-
Confidence 344577888888875 56777666666655333322221 246666666643 2388888888888765432
Q ss_pred HHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009036 424 RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELM 503 (546)
Q Consensus 424 r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L 503 (546)
..++.++.+|... .++.++..|+.+|..+|.++.. .. ++..|..+..+.++.++..|...|-.+
T Consensus 611 -------e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~-~~------aid~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 611 -------TTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGL-QS------AIDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp -------SSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCC-HH------HHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCc-HH------HHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 4577788777664 4689999999999999876532 22 467888888899999999999888877
Q ss_pred hcC
Q 009036 504 KGR 506 (546)
Q Consensus 504 ~~~ 506 (546)
-..
T Consensus 675 g~g 677 (963)
T 4ady_A 675 LIQ 677 (963)
T ss_dssp STT
T ss_pred hcC
Confidence 643
No 149
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.35 E-value=0.0034 Score=71.72 Aligned_cols=264 Identities=15% Similarity=0.096 Sum_probs=178.9
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC----ch
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK----IN 302 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~----~n 302 (546)
..++.+++.+...+...+..++..|..+....... .....+++..|.+.+...... +.|+.++..|+... ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 34566778887666666778888888876643211 122247888888888765433 88999999888542 22
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhc
Q 009036 303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSL 380 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~ 380 (546)
...++ +.++.++..+.+....+|..|..++..+... +.... ...++.|+..|.+. .=+.+..|+.+|..|+.
T Consensus 90 e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 90 EPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp HHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 22222 5788888888888888988887777766432 22211 34688888888765 56888999999999986
Q ss_pred CchhHHHHHhcCcHHHHHHHHhC--chHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036 381 VKSNRTKLVKLGSVNALLGMVNS--GHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL 458 (546)
Q Consensus 381 ~~~n~~~iv~~Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L 458 (546)
....+....-...||.+.+.+-+ ++++..|..++..+|..-.|++- ...||.|++.+.+. +....++..|
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p-----~~~~~~~~~l 235 (986)
T 2iw3_A 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADP-----TEVPETVHLL 235 (986)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCT-----THHHHHHHHH
T ss_pred HhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcCh-----hhhHHHHHHh
Confidence 44322222222678888888876 34899999999999986555432 35789999999882 3355566665
Q ss_pred HHHhcCCh-hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcccc
Q 009036 459 YALSHGGL-RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEE 511 (546)
Q Consensus 459 ~~L~~~~~-~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~ 511 (546)
..-+.-.+ ....+.. ++|.|.+=+...+..++++++-++.+|++--++..
T Consensus 236 ~~~tfv~~v~~~~l~~---~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~ 286 (986)
T 2iw3_A 236 GATTFVAEVTPATLSI---MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ 286 (986)
T ss_dssp TTCCCCSCCCHHHHHH---HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hcCeeEeeecchhHHH---HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH
Confidence 54443221 1222222 45777777888899999999999999999776655
No 150
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0023 Score=61.89 Aligned_cols=189 Identities=8% Similarity=0.036 Sum_probs=126.9
Q ss_pred HHHHHccCCHHHHHHHHHHHhh-cccc-cchhhHHhh-cCChHHHHHhh-ccCCHHHHHHHHHHHHHhhcCc---hhHHH
Q 009036 315 IVDVLMAGSAEAQEHACGAIFS-LALD-DQNKTAIGV-LGALPPLLHLL-KSDSERTQHDSALALYHLSLVK---SNRTK 387 (546)
Q Consensus 315 Lv~lL~~~~~~~~~~Aa~~L~~-Ls~~-~~~k~~i~~-~g~l~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~~~---~n~~~ 387 (546)
+...+.+.+..-|..|+..|.. +... .+....... ...+..|.+.+ ++.+..++..|+.+|..|+..- .....
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556788899999999999988 7643 111100111 23467777888 6779999999999999998522 11101
Q ss_pred HHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHH--hCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 388 LVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVL--DSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 388 iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~--~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
.. .-+++.+++.+.+.. +++.+..+|..++..-+. .... =..+++.|+..|.+ .+..+++.++.+|..++.
T Consensus 101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~---k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKH---KTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTC---SSHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcC---CChHHHHHHHHHHHHHHH
Confidence 11 126888888888753 778888888877752211 0000 01255677777776 468999999999999886
Q ss_pred CChhh-HHHH-HH-CCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036 464 GGLRF-KGLA-AA-AGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE 508 (546)
Q Consensus 464 ~~~~~-~~~~-~~-~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 508 (546)
..... ..+. .- ..+++.|..++.+.++.+|+.|.++|..+...-.
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 43221 2221 12 4588999999999999999999999999876443
No 151
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.22 E-value=0.0098 Score=62.12 Aligned_cols=226 Identities=13% Similarity=0.138 Sum_probs=145.4
Q ss_pred HHHhcCC-CCHHHHHHHHHHHHHHhccChhhhHHhhcCC--hHHHHHHHHc----c-----------C--CHHHHHHHHH
Q 009036 232 FVQKLKS-PQVHEVEEALISLRKLTRSREETRVSLCTPR--LLLALRSLII----S-----------R--YTNVQVNAVA 291 (546)
Q Consensus 232 lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g--~i~~Lv~lL~----s-----------~--~~~v~~~A~~ 291 (546)
+++.|.. .+.+.+.-++..|..+.+. +..|..+.+.+ .++.++..+. + + ..+++-.++-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 4444544 2345566788888888875 67888887643 4677655433 1 1 2456788899
Q ss_pred HHHHhhcCCchHHHHHhcCCh--HHHHHHHccC-CHHHHHHHHHHHhhccccc--chh----hHHhhcCChHHHHHhhcc
Q 009036 292 ALVNLSLEKINKMLIVRSGLV--PPIVDVLMAG-SAEAQEHACGAIFSLALDD--QNK----TAIGVLGALPPLLHLLKS 362 (546)
Q Consensus 292 ~L~nLs~~~~nk~~i~~~g~l--~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~--~~k----~~i~~~g~l~~Lv~lL~~ 362 (546)
++.-|+.+++....+...+.. +.|+.+++.. ..++...+..+|.||.... +.+ ..+...++ ..++..|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999988777777766543 6777778865 6889999999999998754 112 22222334 556666654
Q ss_pred ---CCHHHHHHHHH-------HHHHhhcC------------------------chhHHHHHhc--CcHHHHHHHHhCc--
Q 009036 363 ---DSERTQHDSAL-------ALYHLSLV------------------------KSNRTKLVKL--GSVNALLGMVNSG-- 404 (546)
Q Consensus 363 ---~~~~~~~~A~~-------aL~~Ls~~------------------------~~n~~~iv~~--Gav~~Lv~lL~~~-- 404 (546)
.++++....-. .+..|+++ .+|..++-+. .+++.|+++|...
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 35555333221 12222221 2333344333 5778899999731
Q ss_pred --------h--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036 405 --------H--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS 462 (546)
Q Consensus 405 --------~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~ 462 (546)
+ +..-|+-=|..++. .|+||..+-+-|+-..++++|.+ .+++++.+|+.++-.+-
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h---~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNH---SDSRVKYEALKATQAII 475 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSC---SSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 2 33445555566664 78888877778999999999988 57999999988876553
No 152
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.05 E-value=0.036 Score=56.24 Aligned_cols=208 Identities=12% Similarity=0.051 Sum_probs=132.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV 349 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~ 349 (546)
+..-+++++.++|...+.-..-.+.+++..++... =++..|..=++++++-+|..|.++|.++...+-.
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~------ 137 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-----IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTML------ 137 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-----GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH------
Confidence 34556778899999999988888888877632221 1456777778889999999999999998543311
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHH
Q 009036 350 LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAV 427 (546)
Q Consensus 350 ~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i 427 (546)
....+.+.+.|.+.++.+++.|+.+.++|...... +++ +.+..+.+++.+.+ +...|+.+|..++..+ +.
T Consensus 138 ~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--~~-- 209 (355)
T 3tjz_B 138 QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND--RL-- 209 (355)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--HH--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--hH--
Confidence 12344566777788999999999999999764322 343 68999999998866 7889999999998643 21
Q ss_pred HhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 428 LDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG-LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 428 ~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~-~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
.+..|+..+..+...++..+-.-+.++..++..+ +. .....++.|..++++.++.+.-.|+.++-.|..
T Consensus 210 ----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 210 ----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 3455566555532224555555555554444433 11 112245666666777777777666666666654
No 153
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.024 Score=55.34 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=118.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccChhhh--HH-hhc-CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC---c-hH
Q 009036 232 FVQKLKSPQVHEVEEALISLRKLTRSREETR--VS-LCT-PRLLLALRSLIISRYTNVQVNAVAALVNLSLEK---I-NK 303 (546)
Q Consensus 232 lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r--~~-l~~-~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~---~-nk 303 (546)
+-.+|.+.+|..|.+|+..|..+........ .. +.. ...++.+...+.+.+..++..++.+|..+...- . .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4578999999999999999998776433211 11 111 234566777888889999999999988776531 1 11
Q ss_pred HHH--HhcCChHHHHHH-HccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036 304 MLI--VRSGLVPPIVDV-LMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 304 ~~i--~~~g~l~~Lv~l-L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~ 380 (546)
... .-..+++.|++- |.+....++..|..+|..+........ ..++.++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 111 123467777764 777888999888888877654322211 134566777888899999999988887654
Q ss_pred C-c-h--hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC
Q 009036 381 V-K-S--NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC 420 (546)
Q Consensus 381 ~-~-~--n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~ 420 (546)
. . . +-...+. .+++.+..+|.+.+ +++.|..++..|-..
T Consensus 169 ~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 2 1 1 1111121 24556777777654 899998888777653
No 154
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.86 E-value=0.071 Score=61.00 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=150.4
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR-YTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
.++.++..+.+....++..|...+..+.+.-+..- + ..++|.|+..|.+. ....+..|+.+|..|+... ...+
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~ 169 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQV 169 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHH
Confidence 35666777777778888888888877776432221 1 35689999988755 6899999999999998643 2333
Q ss_pred Hh--cCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh
Q 009036 307 VR--SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN 384 (546)
Q Consensus 307 ~~--~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n 384 (546)
.. ...||.+.+.+.+..++++..|..++..++..-.|+.. ...+|.|++.+.+.+. .-.++..|..-....+.
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v 244 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEV 244 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCC
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeee
Confidence 22 35788888888888999999999999888775555432 3578999999987632 34444444443333332
Q ss_pred HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036 385 RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQESCVSVLYA 460 (546)
Q Consensus 385 ~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~ 460 (546)
-...... .+|.|..-|.... ++.+++-++.|||.--+....+.. ...+|.|-+..... .++++++.|-.++..
T Consensus 245 ~~~~l~~-~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~--~~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 245 TPATLSI-MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATI--ADPEAREVTLRALKT 321 (986)
T ss_dssp CHHHHHH-HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTC--CSHHHHHHHHHHHHH
T ss_pred cchhHHH-HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhcc--CCHHHHHHHHHHHHH
Confidence 2222221 4556666665433 788899999999987666555543 45666666666664 569999988888877
Q ss_pred Hh
Q 009036 461 LS 462 (546)
Q Consensus 461 L~ 462 (546)
|-
T Consensus 322 l~ 323 (986)
T 2iw3_A 322 LR 323 (986)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 155
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.77 E-value=0.13 Score=58.30 Aligned_cols=238 Identities=11% Similarity=0.064 Sum_probs=153.7
Q ss_pred hhHHHHHHhcC---CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCC--------HHHHHHHHHHHHH
Q 009036 227 EQEDYFVQKLK---SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRY--------TNVQVNAVAALVN 295 (546)
Q Consensus 227 ~~i~~lv~~L~---s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~--------~~v~~~A~~~L~n 295 (546)
+.+..|-..|. +++..++.-|+..|..+...... .++..|...|.+++ ..++..|+..|+.
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44556666665 56777888888888877654321 25777888887655 5677777777776
Q ss_pred hhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc-cCCHHHHHHHHHH
Q 009036 296 LSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK-SDSERTQHDSALA 374 (546)
Q Consensus 296 Ls~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~-~~~~~~~~~A~~a 374 (546)
......+. .+++.|..+|...+..++..|+.+|..+-....+. .++..|+..+. ..+..+++.++.+
T Consensus 464 a~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~------~ai~~LL~~~~e~~~e~vrR~aalg 531 (963)
T 4ady_A 464 AAMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP------EAIHDMFTYSQETQHGNITRGLAVG 531 (963)
T ss_dssp HSTTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH------HHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HhcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH------HHHHHHHHHHhccCcHHHHHHHHHH
Confidence 54332222 24677888888777777777777776553322222 24566666654 4577888888888
Q ss_pred HHHhhcCchhHHHHHhcCcHHHHHHHHhC---chHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHH
Q 009036 375 LYHLSLVKSNRTKLVKLGSVNALLGMVNS---GHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQ 451 (546)
Q Consensus 375 L~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~---~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~ 451 (546)
|.-+....+ ..++.+++.|.. +.++..++.++..-+....+. .+|+.|++.+.+. .++.++
T Consensus 532 LGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d--~~d~VR 595 (963)
T 4ady_A 532 LALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSD--SNDDVR 595 (963)
T ss_dssp HHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHC--SCHHHH
T ss_pred HHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccC--CcHHHH
Confidence 887755322 357777777753 225665665555433322221 2567777777664 457889
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHCCcHHHHHH-HHhcCCHHHHHHHHHHHHHhhcCCcc
Q 009036 452 ESCVSVLYALSHGGLRFKGLAAAAGMAEVLMR-MERVGSEHVKEKAKRMLELMKGRAEE 509 (546)
Q Consensus 452 e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~-ll~~~s~~~k~~A~~lL~~L~~~~~~ 509 (546)
..|+..|..+..+++ ..++.++. +.+++++.+|..|..+|-.++...+.
T Consensus 596 raAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 596 RAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp HHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc
Confidence 999999988876543 13445555 56788999999999999888755543
No 156
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.75 E-value=0.0037 Score=65.88 Aligned_cols=239 Identities=14% Similarity=0.106 Sum_probs=159.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh--hhHHhhcCChHHHHHHHHc-------cCC---HHHHHHHHHHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREE--TRVSLCTPRLLLALRSLII-------SRY---TNVQVNAVAALVN 295 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~l~~~g~i~~Lv~lL~-------s~~---~~v~~~A~~~L~n 295 (546)
.++.|+..|-++.|++|--|+-.|+++.+.... .|..-....+.-.|+-+|. ..| ..|++.|+.+|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 778999999999999999999999998876432 1211111233333333332 122 4689999999998
Q ss_pred hhcC-CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh-hcCChHHHHHhhccCCHHHHHHHHH
Q 009036 296 LSLE-KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG-VLGALPPLLHLLKSDSERTQHDSAL 373 (546)
Q Consensus 296 Ls~~-~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~l~~Lv~lL~~~~~~~~~~A~~ 373 (546)
+ .+ +.. ..++..|+..+....-+++.-++-.|.++ ++.+. -.++++.++..|.+.+.+++..|+.
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 64 222 23455555555677899999999999998 11111 2457788888888889999999999
Q ss_pred HHHHhhcCchhHHHHHhcCcHHHHHHHHhCch----HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHH
Q 009036 374 ALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH----MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSES 449 (546)
Q Consensus 374 aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~ 449 (546)
+|.-++ .++.... ++..|-+.|.+.+ .....+..|..|+..+.. +-.....+|.|...|+.. -..
T Consensus 322 tLiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt---ITS 390 (800)
T 3oc3_A 322 LLCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP---VPE 390 (800)
T ss_dssp HHTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS---SHH
T ss_pred Hhhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC---cHH
Confidence 999888 2211111 3333444444322 567788888888876631 111246788888888884 478
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHCCcHH-HHHHHHhcCCHHHHHHHHHHHH
Q 009036 450 TQESCVSVLYALSHGGLRFKGLAAAAGMAE-VLMRMERVGSEHVKEKAKRMLE 501 (546)
Q Consensus 450 ~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~-~L~~ll~~~s~~~k~~A~~lL~ 501 (546)
++..++.+|..+. . .. ++. .+..++-..++.+++.+..+.+
T Consensus 391 VR~AVL~TL~tfL--~---~~------~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 391 VRTSILNMVKNLS--E---ES------IDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHTTTCC--C---HH------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--h---hh------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8999988887766 1 11 222 3344577788999999988876
No 157
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.55 E-value=0.0029 Score=48.87 Aligned_cols=47 Identities=11% Similarity=0.035 Sum_probs=37.0
Q ss_pred ceeCcccccccCCCeec-CCCccccHHHHHHHHhcC-CCCCCCCCCCCC
Q 009036 45 EFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLG-FTPTLVDGTTPD 91 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~ 91 (546)
.-.|+||.+++..=+.- .|||.|=..||.+||+.. ...||.|+....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 34699999998743332 799999999999999754 468999987654
No 158
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.14 E-value=0.0073 Score=44.57 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=39.4
Q ss_pred CceeCcccccccCCCeecCCCc-----cccHHHHHHHHhc-CCCCCCCCCCCCC
Q 009036 44 GEFLCPVSGSLMADPVVVSSGH-----TFERACAHVCKTL-GFTPTLVDGTTPD 91 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~~~G~-----ty~r~~i~~~~~~-~~~~cp~~~~~~~ 91 (546)
+.-.|.||++-..+|.+.||.. -|=+.|+.+|+.. ++..||.|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4456999999888999889753 7999999999975 6678999987654
No 159
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.13 E-value=0.0019 Score=53.19 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=28.5
Q ss_pred CceeCccccc-ccCCCee--cCCCccccHHHHHHH
Q 009036 44 GEFLCPVSGS-LMADPVV--VSSGHTFERACAHVC 75 (546)
Q Consensus 44 ~~~~CpI~~~-~m~dPV~--~~~G~ty~r~~i~~~ 75 (546)
+++.|+||.+ .+++||. +.|||+||+.|++.+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4678999996 5899999 999999999999984
No 160
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.12 E-value=0.055 Score=62.38 Aligned_cols=255 Identities=10% Similarity=0.078 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc------cCCHHHHHHHHHHHHHhhcCCchHHHHHhc-----C
Q 009036 242 HEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII------SRYTNVQVNAVAALVNLSLEKINKMLIVRS-----G 310 (546)
Q Consensus 242 ~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~------s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~-----g 310 (546)
..+..|...|..++.... ..+. .-+++.+...+. +.+...++.|+.++..++..-.....-... .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 356677777777776532 1111 123444444554 457788899999999887531100000000 1
Q ss_pred ChH----HHHHHHccC---CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036 311 LVP----PIVDVLMAG---SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS 383 (546)
Q Consensus 311 ~l~----~Lv~lL~~~---~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~ 383 (546)
..+ .++..|.+. .+.+|..|+++|..++..- .+.. -...++.++..|.+.+..++..|+.+|.+++....
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 112 223334555 8999999999999987642 1221 23467888888888889999999999999987321
Q ss_pred ---------hHHHHHhc--CcHHHHHHHHhCc-----h--HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccC
Q 009036 384 ---------NRTKLVKL--GSVNALLGMVNSG-----H--MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKG 443 (546)
Q Consensus 384 ---------n~~~iv~~--Gav~~Lv~lL~~~-----~--~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~ 443 (546)
.+..+... ..+..|+.++... . ..+.++.+|..++.... +.+.. ...++.|+.++...
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~--~~~~p~~~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE--DSIQPLFPQLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT--TTTGGGHHHHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHH
Confidence 12223222 4666677777663 1 23456666665543111 01111 12334555544331
Q ss_pred --CCCCHHHHHHHHHHHHHHhcC-Ch-hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 444 --TELSESTQESCVSVLYALSHG-GL-RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 444 --~~~s~~~~e~Av~~L~~L~~~-~~-~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
++.+......++.+|..++.. ++ ....... .+++.+..+++.......+.+..++..|....
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--SMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--HHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 123566667778888777764 32 2222222 36788888888776777777888877776543
No 161
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.08 E-value=0.096 Score=50.76 Aligned_cols=175 Identities=16% Similarity=0.090 Sum_probs=116.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCC-hHHHHHHHHccCCHHHHHHHHHHHHHhhc----C-CchH
Q 009036 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPR-LLLALRSLIISRYTNVQVNAVAALVNLSL----E-KINK 303 (546)
Q Consensus 230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g-~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~----~-~~nk 303 (546)
+.+...|-+.++..+.+|+..|......+++ ..+...+ ++..+.--+.+.+..+...++.+|..+.. . ....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 4566677778999999999999987654432 2222212 23433334457788888888877766532 1 1111
Q ss_pred HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036 304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS 383 (546)
Q Consensus 304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~ 383 (546)
..-+ .-.+|.|++-|.+....+|..+-.+|..+.... .-...++.++.-+++.|.+.+..++..|.++-....
T Consensus 127 ~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 127 QEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 1111 236899999998888999998888887764321 112356777888888999999999988888754222
Q ss_pred hHHHHHhcCcH---HHHHHHHhCch--HHHHHHHHHHHh
Q 009036 384 NRTKLVKLGSV---NALLGMVNSGH--MTGRVLLILGNL 417 (546)
Q Consensus 384 n~~~iv~~Gav---~~Lv~lL~~~~--~~e~al~~L~nL 417 (546)
.. ...++ +.+..++.+.+ +++.|+.++..+
T Consensus 200 ~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 200 IS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp SG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred CC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11 23467 99999998765 888888887644
No 162
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.97 E-value=0.16 Score=50.31 Aligned_cols=137 Identities=10% Similarity=0.075 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHhhcCchhHHHHHhc--CcHHHHHHHHhC--chHHHHHHHHHHHhhCCcc---cHHHHHhCCcHHH
Q 009036 363 DSERTQHDSALALYHLSLVKSNRTKLVKL--GSVNALLGMVNS--GHMTGRVLLILGNLASCSD---GRVAVLDSGGVEC 435 (546)
Q Consensus 363 ~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~--Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e---~r~~i~~~g~i~~ 435 (546)
..+..+..++++++|+..+...+..+... .+++.+...+.+ .+++-.+..++.|++.... ..+.. ..++..
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~ 237 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSL 237 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHH
Confidence 35667888999999999988888777754 233333333332 3478888899999986311 11111 114455
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhc-CCHHHHHHHHHHHHHh
Q 009036 436 LVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERV-GSEHVKEKAKRMLELM 503 (546)
Q Consensus 436 Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~-~s~~~k~~A~~lL~~L 503 (546)
+..++... .+.++...++.+|.+|...+....+++...|+...+-.+... ..+++.+.|..+|..|
T Consensus 238 l~~il~~~--~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 238 ISTILEVV--QDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred HHHHHhcc--CCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 55666553 468888999999999988777788888888877777666655 5788999999888654
No 163
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.91 E-value=0.0056 Score=49.41 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=37.8
Q ss_pred eCcccccccCCCe-ecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 47 LCPVSGSLMADPV-VVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 47 ~CpI~~~~m~dPV-~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
.|++|.-.+..=. ++||+|.||..|+..|...+...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4888887666544 469999999999999998888899999876543
No 164
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.51 E-value=0.29 Score=48.41 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=110.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHH----HHHcc-CCHHHHHHHHHHHhhcccccchh
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIV----DVLMA-GSAEAQEHACGAIFSLALDDQNK 344 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv----~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k 344 (546)
.+..|.+++ ....+.+--++.++.-+..++.....+.+...-..++ ..+.. +.+..+..+++++.|+......+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 466777776 5555566667777777666666555555433323333 33332 35777899999999999888777
Q ss_pred hHHhh--cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch---hHHHHHhcCcHHHHHHHHh---CchHHHHHHHHHHH
Q 009036 345 TAIGV--LGALPPLLHLLKSDSERTQHDSALALYHLSLVKS---NRTKLVKLGSVNALLGMVN---SGHMTGRVLLILGN 416 (546)
Q Consensus 345 ~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~---n~~~iv~~Gav~~Lv~lL~---~~~~~e~al~~L~n 416 (546)
..+.. ...++.+...+.+.+..++..++.+++|++...- ...... -++..+..++. +.+...+++.+|.+
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~--~ll~~l~~il~~~~d~EalyR~LvALGt 260 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKA--QCLSLISTILEVVQDLEATFRLLVALGT 260 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHH--HHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHH--HHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 76654 2355555555556688899999999999987321 111101 13334444443 34478889999999
Q ss_pred hhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036 417 LASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVS 456 (546)
Q Consensus 417 La~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~ 456 (546)
|...+.....+.+.=.+...++-+.+.+ ...++.+.|-.
T Consensus 261 L~~~~~~~~~lak~l~~~~~v~~~~~~~-~~~kv~~~~~~ 299 (304)
T 3ebb_A 261 LISDDSNAVQLAKSLGVDSQIKKYSSVS-EPAKVSECCRF 299 (304)
T ss_dssp HHTTCHHHHHHHHHTTHHHHGGGGGGCC-SSHHHHHHHHH
T ss_pred HHhCChhHHHHHHHcCHHHHHHHHHhCC-CchhHHHHHHH
Confidence 9987655555555333344444444432 23555555433
No 165
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.29 E-value=0.0023 Score=63.56 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=37.4
Q ss_pred CceeCcccccccCC----Cee----cCCCccccHHHHHHHHhcC----------CCCCCCCCCCCC
Q 009036 44 GEFLCPVSGSLMAD----PVV----VSSGHTFERACAHVCKTLG----------FTPTLVDGTTPD 91 (546)
Q Consensus 44 ~~~~CpI~~~~m~d----PV~----~~~G~ty~r~~i~~~~~~~----------~~~cp~~~~~~~ 91 (546)
....|+||...+.+ |-. ..|||.|-..||.+|++.. ...||-|+++++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34569999999998 544 3799999999999999741 137999987653
No 166
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.019 Score=57.82 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=52.9
Q ss_pred CceeCcccccccCCCeec-CCCcc--ccHHHHHHHHhc-CCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 009036 44 GEFLCPVSGSLMADPVVV-SSGHT--FERACAHVCKTL-GFTPTLVDGTTPDFSTVIPNLALKSTILN 107 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~-~~G~t--y~r~~i~~~~~~-~~~~cp~~~~~~~~~~l~pn~~l~~~i~~ 107 (546)
-.+.|||+...|+.||-- .|-|. ||...+...... +.-.||.|.+.....+|+.+..+.++++.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 347899999999999995 89997 999998775544 44489999999998899999888777653
No 167
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.76 Score=44.40 Aligned_cols=186 Identities=11% Similarity=0.092 Sum_probs=114.7
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHhhcccccc---hhhHHh-h-cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc---
Q 009036 311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ---NKTAIG-V-LGALPPLLHLLKSDSERTQHDSALALYHLSLVK--- 382 (546)
Q Consensus 311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~---~k~~i~-~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~--- 382 (546)
-+| |-+-|.+.+-..|..|...|..+..... ...... . ......+-..+.+.|..+...++.+|..++..-
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 345 5577888899999999888876543321 111111 1 234556667788889999999999998886521
Q ss_pred ---hhHHHHHhcCcHHHHHHH-HhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036 383 ---SNRTKLVKLGSVNALLGM-VNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVS 456 (546)
Q Consensus 383 ---~n~~~iv~~Gav~~Lv~l-L~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~ 456 (546)
.......-...++.|++- |.+.. ++..++.+|..++........ ++..++..+.. .++.++..++.
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~---Knpkv~~~~l~ 161 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEK---KLPKLIAAAAN 161 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGC---SCHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhc---cCHHHHHHHHH
Confidence 112222333567777765 55433 777788777766532211111 12344444444 57899999999
Q ss_pred HHHHHhc--CCh--hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 457 VLYALSH--GGL--RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 457 ~L~~L~~--~~~--~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
.|..+.. +.. .....+.. +++.+..++.+.++.+|..|..++-.|-..-
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l~~--i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFLPE--LLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHH--HGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCcCCchhHHHH--HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 8887754 211 11222221 4567888899999999999999998776543
No 168
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.13 E-value=0.76 Score=52.78 Aligned_cols=214 Identities=11% Similarity=0.076 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhhHHhhcC-----ChHHHH----HHHHccC---CHHHHHHHHHHHHHhhcCCchHHH
Q 009036 238 SPQVHEVEEALISLRKLTRSREETRVSLCTP-----RLLLAL----RSLIISR---YTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 238 s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~-----g~i~~L----v~lL~s~---~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
+.+|..++.|+..+..++....... .-... .+.+.+ +..|.++ ++.++..|+++|..++..- ....
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~-~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~ 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITN-AGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBT-TBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhcccc-CCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH
Confidence 5678899999999999985421111 00111 344433 3345555 8899999999999988642 2222
Q ss_pred HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc---------hhhHHhh--cCChHHHHHhhccCC---HH--HHH
Q 009036 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ---------NKTAIGV--LGALPPLLHLLKSDS---ER--TQH 369 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~---------~k~~i~~--~g~l~~Lv~lL~~~~---~~--~~~ 369 (546)
+ ...++.++..|.+.+..++.+|+.+|.+++...+ .+..+.. ...++.|+.++.... .+ ...
T Consensus 494 l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 494 L--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred H--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 1 2367888888888889999999999999876421 2333321 346667777776631 11 223
Q ss_pred HHHHHHHHhhcC--chhHHHHHhcCcHHHHHHHHh----Cc---hHHHHHHHHHHHhhCC--cccHHHHHhCCcHHHHHH
Q 009036 370 DSALALYHLSLV--KSNRTKLVKLGSVNALLGMVN----SG---HMTGRVLLILGNLASC--SDGRVAVLDSGGVECLVG 438 (546)
Q Consensus 370 ~A~~aL~~Ls~~--~~n~~~iv~~Gav~~Lv~lL~----~~---~~~e~al~~L~nLa~~--~e~r~~i~~~g~i~~Lv~ 438 (546)
.+..+|..+... ...... .. ..++.|+..+. ++ .....++.+|..++.. ++... -.....++.+..
T Consensus 572 ~l~~al~~vv~~~~~~~~p~-~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~ 648 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPL-FP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLT 648 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGG-HH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhH-HH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHH
Confidence 445555554331 111111 11 23444554443 22 2555567777766653 22222 223345677777
Q ss_pred HHccCCCCCHHHHHHHHHHHHHH
Q 009036 439 MLRKGTELSESTQESCVSVLYAL 461 (546)
Q Consensus 439 lL~~~~~~s~~~~e~Av~~L~~L 461 (546)
+|... ..+..+.+..++..+
T Consensus 649 iL~~~---~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 649 VFSED---IQEFIPYVFQIIAFV 668 (960)
T ss_dssp HHHTT---CTTTHHHHHHHHHHH
T ss_pred HHHhh---hHhhHHHHHHHHHHH
Confidence 77663 233455555555444
No 169
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.71 E-value=0.47 Score=45.24 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCC-----HHHHHHHHHHHHHhhcC--CchHHHHHhcCChHH
Q 009036 242 HEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRY-----TNVQVNAVAALVNLSLE--KINKMLIVRSGLVPP 314 (546)
Q Consensus 242 ~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~-----~~v~~~A~~~L~nLs~~--~~nk~~i~~~g~l~~ 314 (546)
.-...|+..|+-+|. +++.|..+.++...-.|..+|...+ ..++-.++.+++.|.+. .+.-..+.+.+++|.
T Consensus 71 nRVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 71 NRVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 345677888888886 5789999999998888888887532 45777888899988874 344555567889999
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--------cCChHHHHHhh-ccCCHHHHHHHHHHHHHhhcCchhH
Q 009036 315 IVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--------LGALPPLLHLL-KSDSERTQHDSALALYHLSLVKSNR 385 (546)
Q Consensus 315 Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--------~g~l~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~~~~n~ 385 (546)
.++++..|+.-.|..|.-++..+..++..-..+.. ..++..++.-+ +..++++.++.+++-..|+.++..|
T Consensus 150 CLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar 229 (268)
T 2fv2_A 150 CLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAR 229 (268)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999988777765444432 11222333222 3357777777777777777766655
Q ss_pred HHHH
Q 009036 386 TKLV 389 (546)
Q Consensus 386 ~~iv 389 (546)
..+-
T Consensus 230 ~aL~ 233 (268)
T 2fv2_A 230 EALR 233 (268)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 170
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.66 E-value=0.042 Score=55.18 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=53.5
Q ss_pred CceeCcccccccCCCeec-CCCcc--ccHHHHHHHHhcC-CCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 009036 44 GEFLCPVSGSLMADPVVV-SSGHT--FERACAHVCKTLG-FTPTLVDGTTPDFSTVIPNLALKSTILN 107 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~-~~G~t--y~r~~i~~~~~~~-~~~cp~~~~~~~~~~l~pn~~l~~~i~~ 107 (546)
=.+.|||+...|+.||-- .|-|. ||...+....... .-.||.|.+.....+|+.+..+.+.+..
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 357899999999999995 89997 9999987765543 4489999999998899999888777664
No 171
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.65 E-value=2.1 Score=42.49 Aligned_cols=194 Identities=13% Similarity=0.110 Sum_probs=138.4
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHH----hh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVS----LC-TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK 300 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~----l~-~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~ 300 (546)
.+.+..|+..|..-+.+.+..+......+.+.....+.. +. ...++..|+.--.. +++--.+-..|.....++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~--~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES--PEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS--TTTHHHHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhcc--chhHhHHHHHHHHHHHhH
Confidence 456678888888889999999999888888765543322 22 24455555554443 334444556677777777
Q ss_pred chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-h-hhHHhh--cCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036 301 INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-N-KTAIGV--LGALPPLLHLLKSDSERTQHDSALALY 376 (546)
Q Consensus 301 ~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~-k~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~ 376 (546)
.....|...+.+..+......++-++-..|..++..|-.... . .+.+.. ...+...-.+|.+++--.++.++..|.
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 777777777788888898899999999999999987754332 1 222222 235666778899999999999999999
Q ss_pred HhhcCchhHHHHHhc----CcHHHHHHHHhCch--HHHHHHHHHHHhhCCc
Q 009036 377 HLSLVKSNRTKLVKL----GSVNALLGMVNSGH--MTGRVLLILGNLASCS 421 (546)
Q Consensus 377 ~Ls~~~~n~~~iv~~----Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~ 421 (546)
.|-..+.|..-|... .-+..++.+|.+.+ ++-.|.-++.....++
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 999988886665544 66778888888754 8888888887655443
No 172
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.56 E-value=1.5 Score=41.37 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=73.3
Q ss_pred HHHHhcCCCC-HHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc----C-------CHHHHHHHHHHHHHhh
Q 009036 231 YFVQKLKSPQ-VHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS----R-------YTNVQVNAVAALVNLS 297 (546)
Q Consensus 231 ~lv~~L~s~~-~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s----~-------~~~v~~~A~~~L~nLs 297 (546)
..|++|++.. .+.-.+-+..|+...+.++ .-...+ ..+++..|+..|.. . +...+..++.+|..+.
T Consensus 4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm 82 (233)
T 2f31_A 4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 82 (233)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence 3456665443 2222334555554444443 333444 46788888887752 1 4566778888888887
Q ss_pred cCCchHHHHHh-cCChHHHHHHHccCCHHHHHHHHHHHhhccccc
Q 009036 298 LEKINKMLIVR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD 341 (546)
Q Consensus 298 ~~~~nk~~i~~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~ 341 (546)
....+...+.. .+.+..|+..|.+.++.++..++.+|..++..+
T Consensus 83 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 83 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 76666666664 467889999998889999999999988877654
No 173
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.36 E-value=3.3 Score=39.41 Aligned_cols=200 Identities=17% Similarity=0.125 Sum_probs=126.0
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHH-------ccCC--H---HHHHHHHHHHH
Q 009036 228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLI-------ISRY--T---NVQVNAVAALV 294 (546)
Q Consensus 228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL-------~s~~--~---~v~~~A~~~L~ 294 (546)
.+..++..|.. ++.++.|+..|..--..-+..-..+. ..|.+..|+.=+ ..+. . .-.-+|+..|-
T Consensus 4 ~i~qli~~L~~--p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSS--PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSS--TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 45566666653 34577777666543222222222233 477777775522 1111 1 12245666677
Q ss_pred HhhcCCchHHHHHhcCChHHHHHHHccCC-----HHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHH
Q 009036 295 NLSLEKINKMLIVRSGLVPPIVDVLMAGS-----AEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERT 367 (546)
Q Consensus 295 nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~-----~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~ 367 (546)
-++.+++.|..+.++...--|--+|+..+ .-+|..+.+++..|...++. -..+...+.+|..++.+..++.-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 78899999999999987666666676442 46788999999998876543 333346789999999999999999
Q ss_pred HHHHHHHHHHhhcCchhHHHH-------Hhc-CcHHHHHHHHh-Cc--hHHHHHHHHHHHhhCCcccHHHHHh
Q 009036 368 QHDSALALYHLSLVKSNRTKL-------VKL-GSVNALLGMVN-SG--HMTGRVLLILGNLASCSDGRVAVLD 429 (546)
Q Consensus 368 ~~~A~~aL~~Ls~~~~n~~~i-------v~~-Gav~~Lv~lL~-~~--~~~e~al~~L~nLa~~~e~r~~i~~ 429 (546)
|..|...+..+-.++..-..+ ... .++..++.-+. ++ .+.+..+.+-..|+.++..|+++.+
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888777766554322222 111 12333333332 22 2777888888888888888887764
No 174
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.28 E-value=2.5 Score=43.08 Aligned_cols=170 Identities=18% Similarity=0.144 Sum_probs=111.3
Q ss_pred HHHHHhcCCCCH-HHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHh
Q 009036 230 DYFVQKLKSPQV-HEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS-----------RYTNVQVNAVAALVNL 296 (546)
Q Consensus 230 ~~lv~~L~s~~~-~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s-----------~~~~v~~~A~~~L~nL 296 (546)
...+..|+++.. +...+.+..|+...+.++ .-...+. .+++..|+..|.. .+...+..++.+|..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 456777765532 323445677775555443 3334555 6788888888751 2457788888999888
Q ss_pred hcCCchHHHHHh-cCChHHHHHHHccCCHHHHHHHHHHHhhcccccc--h-hhHH----------hhcCChHHHHHhhcc
Q 009036 297 SLEKINKMLIVR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ--N-KTAI----------GVLGALPPLLHLLKS 362 (546)
Q Consensus 297 s~~~~nk~~i~~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~-k~~i----------~~~g~l~~Lv~lL~~ 362 (546)
.....+...+.. ...+..|+..|.+..+.++..|..+|..++..++ + ...+ .+..-+..++..|+.
T Consensus 148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 777666666664 4678999999999999999999999988876543 2 2222 224567888888886
Q ss_pred -CCHHHHHHHHHHHHHhhcCch-------hHHHHHhcCcHHHHHHH
Q 009036 363 -DSERTQHDSALALYHLSLVKS-------NRTKLVKLGSVNALLGM 400 (546)
Q Consensus 363 -~~~~~~~~A~~aL~~Ls~~~~-------n~~~iv~~Gav~~Lv~l 400 (546)
.+.+.+..++..+-.|....+ .|.++...|..+.+-.+
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 466775555554444544332 25566677777766653
No 175
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.87 E-value=0.53 Score=45.48 Aligned_cols=135 Identities=10% Similarity=0.023 Sum_probs=95.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccChhhhHHhh--c-CChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcC
Q 009036 235 KLKSPQVHEVEEALISLRKLTRSREETRVSLC--T-PRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRSG 310 (546)
Q Consensus 235 ~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~--~-~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g 310 (546)
.+.+.+..+...++..|..+...-...-..+. + .-++|.|+.-+......+++.+-.+|..+..- +.+ .
T Consensus 95 r~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~ 167 (266)
T 2of3_A 95 RFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------K 167 (266)
T ss_dssp HTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------H
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------H
Confidence 44577888888999888886532111101122 1 34789999888888888988887777666431 111 2
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCCh---HHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036 311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGAL---PPLLHLLKSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l---~~Lv~lL~~~~~~~~~~A~~aL~~Ls~ 380 (546)
+++.++.-+++.+..+|+..+..|..+....... ...++ +.+..++.+.+..++..|+.++..+-.
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5667777888889999999999998875443221 23468 999999999999999999998886643
No 176
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.80 E-value=4.6 Score=46.14 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhh---c--cCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHH
Q 009036 322 GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLL---K--SDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNA 396 (546)
Q Consensus 322 ~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL---~--~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~ 396 (546)
.+...++.|+.+|..++..-.... ...++.++.++ . +.++.++..++++|..++.+-........ .+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHH
Confidence 455678888888888865422111 12334444433 2 24788999999999998864221111111 35666
Q ss_pred HHHHHhCchHHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 397 LLGMVNSGHMTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 397 Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
|+..|. +.++..|+.+|.+||. +.+..+.. ...+..+..++.+.. .+...++.+..++..+..
T Consensus 551 l~~~l~-~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~-~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 551 LVRGLN-SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGR-MKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHH-SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHHHHH
Confidence 666664 6689999999999994 34455543 346667777777642 346788888888888865
No 177
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.68 E-value=4.1 Score=46.56 Aligned_cols=210 Identities=15% Similarity=0.064 Sum_probs=117.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHH---c--cCCHHHHHHHHHHHhhccccc-chhhHHhhcCChH
Q 009036 281 RYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVL---M--AGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALP 354 (546)
Q Consensus 281 ~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL---~--~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~ 354 (546)
.+...++.|+.+|..++....... ...++.++.+| . ..++.++..++.+|..++..- .+... -..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHH
Confidence 566788889999998876522111 13344444443 2 237899999999999887531 11111 123566
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhc--CcHHHHHHHHhCc----hHHHHHHHHHHHhhCC--cccHHH
Q 009036 355 PLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKL--GSVNALLGMVNSG----HMTGRVLLILGNLASC--SDGRVA 426 (546)
Q Consensus 355 ~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~--Gav~~Lv~lL~~~----~~~e~al~~L~nLa~~--~e~r~~ 426 (546)
.|+..| + +.++..|+.+|.+|+.. .+..+.-. ..+..|..++..+ ..+..++.++..++.. ++....
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 666666 2 67889999999999853 33334322 5666677777652 2666777777777643 233333
Q ss_pred HHhCCcHHHHHHHH----ccCCCCCHHHHHHHHHHHHHHhc-----CC------------hhhHHHHHHCCcHHHHHHHH
Q 009036 427 VLDSGGVECLVGML----RKGTELSESTQESCVSVLYALSH-----GG------------LRFKGLAAAAGMAEVLMRME 485 (546)
Q Consensus 427 i~~~g~i~~Lv~lL----~~~~~~s~~~~e~Av~~L~~L~~-----~~------------~~~~~~~~~~g~v~~L~~ll 485 (546)
..+ ..++.++..+ .... .+++.+...+..|..|+. .. ......+ ..+++.+..++
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~-~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l 700 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADS-KTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIA 700 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHH
Confidence 222 2334444333 2210 033344444445544432 11 0111122 23667777776
Q ss_pred hc--CCHHHHHHHHHHHHHhhc
Q 009036 486 RV--GSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 486 ~~--~s~~~k~~A~~lL~~L~~ 505 (546)
.. .++.+.+.+..+++.+..
T Consensus 701 ~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 701 EMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHH
Confidence 54 367899999999988764
No 178
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=92.14 E-value=10 Score=37.64 Aligned_cols=193 Identities=13% Similarity=0.067 Sum_probs=136.7
Q ss_pred hhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC-ch----HHHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhc
Q 009036 265 LCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK-IN----KMLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSL 337 (546)
Q Consensus 265 l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~n----k~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~L 337 (546)
+...+++..|+..|..=+-+.+..+..+..++.... .+ ...+.. - +-++..|-.| ++++-..+-..|...
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~-peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--Q-QNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--C-THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--C-HHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 344688999999998889999999999988887642 22 222332 2 3333333333 556666666777777
Q ss_pred ccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-chhHHHHHhc---CcHHHHHHHHhCch--HHHHHH
Q 009036 338 ALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLVKL---GSVNALLGMVNSGH--MTGRVL 411 (546)
Q Consensus 338 s~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-~~n~~~iv~~---Gav~~Lv~lL~~~~--~~e~al 411 (546)
..++.....|...+.+..+++.+..++=++-..|..++..|-.. .......+.. -.+...-.+|.+++ ++.+++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 77776666677777888999999988888888999888887553 3333344443 34555667777776 788999
Q ss_pred HHHHHhhCCcccHHHHHh----CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 412 LILGNLASCSDGRVAVLD----SGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 412 ~~L~nLa~~~e~r~~i~~----~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
..|..|-....+...+.. ..-+..++.+|++ .+..++-.|..+.--...
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d---~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRD---KSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcC---chhchhhhhhhheeeeee
Confidence 999999988877666543 3467888888988 568899999887755544
No 179
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.69 E-value=4.1 Score=41.51 Aligned_cols=171 Identities=17% Similarity=0.136 Sum_probs=107.2
Q ss_pred HHHHHhcCCCCHHH-HHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHh
Q 009036 230 DYFVQKLKSPQVHE-VEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS-----------RYTNVQVNAVAALVNL 296 (546)
Q Consensus 230 ~~lv~~L~s~~~~~-~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s-----------~~~~v~~~A~~~L~nL 296 (546)
+..|.+|++..... -.+.+..|+...+.++ .....+. .+++..|+..|.. .+...+..++.+|..|
T Consensus 7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal 85 (386)
T 2bnx_A 7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 85 (386)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 45567776553222 2234555655444443 3333443 5788888887752 1456778888889888
Q ss_pred hcCCchHHHHHh-cCChHHHHHHHccCCHHHHHHHHHHHhhcccccc--h-hhHH----------hhcCChHHHHHhhcc
Q 009036 297 SLEKINKMLIVR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ--N-KTAI----------GVLGALPPLLHLLKS 362 (546)
Q Consensus 297 s~~~~nk~~i~~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~-k~~i----------~~~g~l~~Lv~lL~~ 362 (546)
.....+...+.. ..++..|+..|.+..+.++..++.+|..++..++ + ...+ .+..-+..|+..|..
T Consensus 86 mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 86 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 776666665554 4678999999988899999999988888776543 2 2222 223466778888874
Q ss_pred -CCHHHHHHHHHHHHHhhcCch-------hHHHHHhcCcHHHHHHHH
Q 009036 363 -DSERTQHDSALALYHLSLVKS-------NRTKLVKLGSVNALLGMV 401 (546)
Q Consensus 363 -~~~~~~~~A~~aL~~Ls~~~~-------n~~~iv~~Gav~~Lv~lL 401 (546)
.+.+.+..++..+-.|....+ .|..+...|..+.|-.+-
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr 212 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELR 212 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHh
Confidence 466665555544444444332 366777777777765543
No 180
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.29 E-value=11 Score=43.46 Aligned_cols=219 Identities=12% Similarity=0.057 Sum_probs=134.6
Q ss_pred CCCchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC--
Q 009036 223 PNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE-- 299 (546)
Q Consensus 223 ~~~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~-- 299 (546)
+++-+.++.++..+-+++.+.|.+|-..|..+-+.. ++...+..+|. +.++.++.-|+..|.+....
T Consensus 12 ~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W 81 (1023)
T 4hat_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKW 81 (1023)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCT----------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcCc----------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 456778888898886666667888888887665543 44444555554 46889999999888876542
Q ss_pred ----CchHHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHH
Q 009036 300 ----KINKMLIVRSGLVPPIVDVLMAG-----SAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQH 369 (546)
Q Consensus 300 ----~~nk~~i~~~g~l~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~ 369 (546)
++.+..| +...+..+...-..+ ..-++...+.+|..++..+-. .. ...++.|+.++..+ +....
T Consensus 82 ~~L~~e~~~~I-r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p----~~Wp~~l~dL~~~l~~~-~~~~~ 155 (1023)
T 4hat_C 82 KLLPNDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSSSS-VNVCE 155 (1023)
T ss_dssp GGSCHHHHHHH-HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHTTTC-HHHHH
T ss_pred hcCCHHHHHHH-HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh----hhchHHHHHHHHHhcCC-HHHHH
Confidence 2333333 333455554432221 244555566666666543211 11 46778888888653 44556
Q ss_pred HHHHHHHHhhcC---------chh-----HHHHHhc--CcHHHHHHHHhC---chHHHHHHHHHHHhhCCcccHHHHHhC
Q 009036 370 DSALALYHLSLV---------KSN-----RTKLVKL--GSVNALLGMVNS---GHMTGRVLLILGNLASCSDGRVAVLDS 430 (546)
Q Consensus 370 ~A~~aL~~Ls~~---------~~n-----~~~iv~~--Gav~~Lv~lL~~---~~~~e~al~~L~nLa~~~e~r~~i~~~ 430 (546)
..+.+|..|+.. ... +..|... .++..+..+|.. ..+...++.+|......-. -..+.+.
T Consensus 156 ~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i~~i~~~ 234 (1023)
T 4hat_C 156 NNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-YRYIYET 234 (1023)
T ss_dssp HHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-THHHHSS
T ss_pred HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-HHHhcch
Confidence 666777665431 111 1222222 233344444432 3477788899888877543 3456678
Q ss_pred CcHHHHH-HHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 431 GGVECLV-GMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 431 g~i~~Lv-~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
+.++.+. ..|.. +..++.|+.+|..+..
T Consensus 235 ~ll~~l~~~~L~~-----~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 235 NILELLSTKFMTS-----PDTRAITLKCLTEVSN 263 (1023)
T ss_dssp SHHHHHHTHHHHS-----HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCC-----HHHHHHHHHHHHHHHc
Confidence 8999999 77765 7889999999999876
No 181
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.26 E-value=4.9 Score=45.79 Aligned_cols=153 Identities=10% Similarity=0.072 Sum_probs=96.7
Q ss_pred CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHH---ccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCCh
Q 009036 237 KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLI---ISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLV 312 (546)
Q Consensus 237 ~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL---~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l 312 (546)
.+.+|..++.++..|..++...... +...++.++..+ ..+++.++..++.+|..++.. ..+. ... ..++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence 5668999999999999988754321 123455555544 235788999999999988753 2222 222 3588
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh--hcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCc--hhHH
Q 009036 313 PPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG--VLGALPPLLHLLKSD--SERTQHDSALALYHLSLVK--SNRT 386 (546)
Q Consensus 313 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~~Ls~~~--~n~~ 386 (546)
+.|+..|++ +.++..|+.+|..++... +..+. -...+..|..++... +.+.+..+..++..+...- +.+.
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 888888865 789999999999998532 22221 123444555666542 5677788888888876532 3333
Q ss_pred HHHhcCcHHHHHHHH
Q 009036 387 KLVKLGSVNALLGMV 401 (546)
Q Consensus 387 ~iv~~Gav~~Lv~lL 401 (546)
..++ ..++.+...+
T Consensus 608 ~~~~-~l~~~l~~~l 621 (963)
T 2x19_B 608 KNLH-SLISPYIQQL 621 (963)
T ss_dssp HHHH-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHH
Confidence 3332 2455555444
No 182
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=87.90 E-value=6.8 Score=40.76 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=75.0
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i 306 (546)
..+..++..-+ ++..++.-|+..|..+.+.-+.... .+|..++.++...|..++..|+..|-.++.+ ++-.+
T Consensus 29 ~~y~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k- 100 (507)
T 3u0r_A 29 DAYQVILDGVK-GGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR- 100 (507)
T ss_dssp HHHHHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-
Confidence 45667777654 5688888889999998888766543 3688999999999999999999999999988 55444
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHhhc
Q 009036 307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSL 337 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~L 337 (546)
+...|+++|+..++.-....-.+|..|
T Consensus 101 ----iaDvL~QlLqtdd~~E~~~V~~sL~sl 127 (507)
T 3u0r_A 101 ----VADILTQLLQTDDSAEFNLVNNALLSI 127 (507)
T ss_dssp ----HHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 456788999988765555555555544
No 183
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=87.78 E-value=12 Score=42.89 Aligned_cols=218 Identities=11% Similarity=0.031 Sum_probs=124.8
Q ss_pred CchhHHHHH-HhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC---CHHHHHHHHHHHHHhhc-
Q 009036 225 SNEQEDYFV-QKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR---YTNVQVNAVAALVNLSL- 298 (546)
Q Consensus 225 ~~~~i~~lv-~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~---~~~v~~~A~~~L~nLs~- 298 (546)
+-..+...+ ..+. +.+.+.|.+|-..|..+-+.. ++......+|... +..++.-|+.+|.+...
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~ 73 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVRE 73 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHh
Confidence 334455555 3443 337888999988887766543 4556666677543 78999888888876543
Q ss_pred -CCc----hHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCH-HHHHH
Q 009036 299 -EKI----NKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSE-RTQHD 370 (546)
Q Consensus 299 -~~~----nk~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~-~~~~~ 370 (546)
.++ .+..|.+ ..+..+...-. .....++...+.+|..+....-. .. .+.++.|+.++..++. .....
T Consensus 74 l~~e~~~~~~~~lr~-~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p----~~Wp~~i~~l~~~~~~~~~~~~~~~ 148 (980)
T 3ibv_A 74 WNNESNLLELQMIRD-SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP----SNWNDFFASLQGVIAASSQSEFSNF 148 (980)
T ss_dssp CCTTTSHHHHHHHHH-HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHHHHCCHHHHHH
T ss_pred CChhhhHHHHHHHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc----ccCchHHHHHHHHhcCCChhHHHHH
Confidence 334 4444332 23443333100 23567888888888877543210 01 4577777877766433 33344
Q ss_pred HHHHHHHhhcC----c-----h--h-----HHHHHhc---CcHHHHHHHHh------CchHHHHHHHHHHHhhCCcccHH
Q 009036 371 SALALYHLSLV----K-----S--N-----RTKLVKL---GSVNALLGMVN------SGHMTGRVLLILGNLASCSDGRV 425 (546)
Q Consensus 371 A~~aL~~Ls~~----~-----~--n-----~~~iv~~---Gav~~Lv~lL~------~~~~~e~al~~L~nLa~~~e~r~ 425 (546)
.+.+|..|+.. . + . +..|.+. -+++....+|. +..+...++.+|........ -.
T Consensus 149 ~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~ 227 (980)
T 3ibv_A 149 YLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-IN 227 (980)
T ss_dssp HHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HH
T ss_pred HHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HH
Confidence 45555533321 0 0 1 2222211 01333333332 23367788888888776433 34
Q ss_pred HHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 426 AVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 426 ~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
.+++.+.++.+.+.|.. +..++.|+.+|..+..
T Consensus 228 ~i~~~~ll~~l~~~L~~-----~~~r~~A~ecL~ei~~ 260 (980)
T 3ibv_A 228 LIVNEPCMNLLYSFLQI-----EELRCAACETMTEIVN 260 (980)
T ss_dssp HHHCHHHHHHHHHHTTS-----HHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHcCC-----hHHHHHHHHHHHHHHH
Confidence 55566777888877765 6888999999888876
No 184
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=87.48 E-value=9.5 Score=43.35 Aligned_cols=136 Identities=13% Similarity=0.036 Sum_probs=86.3
Q ss_pred cCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhh---ccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHH
Q 009036 321 AGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLL---KSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNAL 397 (546)
Q Consensus 321 ~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL---~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~L 397 (546)
..+...++.++.+|..++..-... ....++.++..| ..+++.++..++++|..++.+-........ .+++.|
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~-~vl~~l 534 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN-SVLPLV 534 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT-TTHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHH
Confidence 346677888888888876542110 012344444443 235788999999999988764222223332 688899
Q ss_pred HHHHhCchHHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036 398 LGMVNSGHMTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQESCVSVLYALSHG 464 (546)
Q Consensus 398 v~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~ 464 (546)
+..|.++.++..|+.+|.+||.. .+..+.. ...+..|..++.... .+...++.++.++..+...
T Consensus 535 ~~~l~~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~-~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 535 LHALGNPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQI-HKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCC-CChHHHHHHHHHHHHHHhc
Confidence 99888877999999999999942 2222331 124445555565432 2467888888888888753
No 185
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=87.15 E-value=12 Score=43.36 Aligned_cols=218 Identities=12% Similarity=0.044 Sum_probs=126.7
Q ss_pred CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC----
Q 009036 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE---- 299 (546)
Q Consensus 225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~---- 299 (546)
+-..+..++..+-+++...|.+|-..|..+-+.. +++..+..+|. +.+..++..|+..|.+....
T Consensus 14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1049)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHST----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCcc
Confidence 3456677777666677777888888887765432 45555666664 46889999999999886532
Q ss_pred --CchHHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHH
Q 009036 300 --KINKMLIVRSGLVPPIVDVLMAG-----SAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDS 371 (546)
Q Consensus 300 --~~nk~~i~~~g~l~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A 371 (546)
++.+..|. ...+..+...-... +..++...+.++..++..+-. .. .+.++.|+..+. .+...+..+
T Consensus 84 l~~~~~~~ir-~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p----~~Wp~ll~~L~~~~~-~~~~~~~~~ 157 (1049)
T 3m1i_C 84 LPNDHRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSS-SSVNVCENN 157 (1049)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHT-TCHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHHc-cChHHHHHH
Confidence 23343333 22333333322111 356777777777777654211 11 467888888886 455566777
Q ss_pred HHHHHHhhcC-----c----hhH-----HHHHhc--CcHHHHHHHHhC---chHHHHHHHHHHHhhCCcccHHHHHhCCc
Q 009036 372 ALALYHLSLV-----K----SNR-----TKLVKL--GSVNALLGMVNS---GHMTGRVLLILGNLASCSDGRVAVLDSGG 432 (546)
Q Consensus 372 ~~aL~~Ls~~-----~----~n~-----~~iv~~--Gav~~Lv~lL~~---~~~~e~al~~L~nLa~~~e~r~~i~~~g~ 432 (546)
+.+|..|+.. . ..+ ..+... .++..+..++.+ ..+...++.++.+....-.. ..+.+...
T Consensus 158 l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~l 236 (1049)
T 3m1i_C 158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNI 236 (1049)
T ss_dssp HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSH
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhH
Confidence 7777777631 0 011 222221 223333444432 23778888888877654332 22445566
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 433 VECLVGMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 433 i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
++.+.+.+.. ++..++.|+.+|..+..
T Consensus 237 l~~l~~~~l~----~~~~~~~a~~~L~~i~~ 263 (1049)
T 3m1i_C 237 LELLSTKFMT----SPDTRAITLKCLTEVSN 263 (1049)
T ss_dssp HHHHHTHHHH----SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CHhHHHHHHHHHHHHHh
Confidence 6666633322 26777778887777765
No 186
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=86.04 E-value=4.5 Score=46.78 Aligned_cols=140 Identities=8% Similarity=0.043 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-----CCHHHHHHHHHHHHHhhcCCchHHHHHhcCChH
Q 009036 239 PQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-----RYTNVQVNAVAALVNLSLEKINKMLIVRSGLVP 313 (546)
Q Consensus 239 ~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-----~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~ 313 (546)
.+|..++.++.+++.++..-......-.=..+++.|+.++.. +...++..++.+|+..+.--.....+. ...+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 579999999999999987643321211113567778887753 223344566677776554111111111 12455
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh------cCChHHHHHhhc----cCCHHHHHHHHHHHHHhhcC
Q 009036 314 PIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV------LGALPPLLHLLK----SDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 314 ~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~------~g~l~~Lv~lL~----~~~~~~~~~A~~aL~~Ls~~ 381 (546)
.|+..|...++.++..|+.++.+|+.. .+..+.. ...++.++..+. .-+.+.+..+..++..+...
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555666666789999999999999864 2222321 123444444332 23555556677777777653
No 187
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=85.35 E-value=16 Score=42.38 Aligned_cols=218 Identities=11% Similarity=0.058 Sum_probs=132.9
Q ss_pred CCCchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC--
Q 009036 223 PNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE-- 299 (546)
Q Consensus 223 ~~~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~-- 299 (546)
+++-..++.++..+-+++.+.|.+|-..|..+-+. +++...+..+|. +.++.++.-|+.+|.+....
T Consensus 24 ~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s----------p~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W 93 (1073)
T 3gjx_A 24 KLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH----------PDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRW 93 (1073)
T ss_dssp CCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC----------SCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTG
T ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----------chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 34567889999988778888888888888665443 244555555554 45889999999998876542
Q ss_pred ----CchHHHHHhcCChHHHHHHHcc-----CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHH
Q 009036 300 ----KINKMLIVRSGLVPPIVDVLMA-----GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHD 370 (546)
Q Consensus 300 ----~~nk~~i~~~g~l~~Lv~lL~~-----~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~ 370 (546)
++.+..| +...+..+...-.. .++.++...+.+|..++..+-.. .=...++.|+.++.. ++.....
T Consensus 94 ~~L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~ 168 (1073)
T 3gjx_A 94 KILPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQN 168 (1073)
T ss_dssp GGSCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHH
T ss_pred hhCCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHH
Confidence 2333333 33345555444322 24566666677777665432110 014567777777754 4455566
Q ss_pred HHHHHHHhhcC--c-------hh-----HHHHHhcCcHHHHHHH----HhC---chHHHHHHHHHHHhhCCcccHHHHHh
Q 009036 371 SALALYHLSLV--K-------SN-----RTKLVKLGSVNALLGM----VNS---GHMTGRVLLILGNLASCSDGRVAVLD 429 (546)
Q Consensus 371 A~~aL~~Ls~~--~-------~n-----~~~iv~~Gav~~Lv~l----L~~---~~~~e~al~~L~nLa~~~e~r~~i~~ 429 (546)
.+.+|..|+.. . .. +..|.+. ++.++.+ |.. ..+...++.+|..+.+.-+ -..+++
T Consensus 169 ~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~ 245 (1073)
T 3gjx_A 169 NMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFE 245 (1073)
T ss_dssp HHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHS
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhcc
Confidence 77777777542 1 01 2223322 4444444 332 2366778899998887654 345677
Q ss_pred CCcHHHHH-HHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036 430 SGGVECLV-GMLRKGTELSESTQESCVSVLYALSH 463 (546)
Q Consensus 430 ~g~i~~Lv-~lL~~~~~~s~~~~e~Av~~L~~L~~ 463 (546)
.+.+..|+ ..|.. +..++.|+.+|..+..
T Consensus 246 ~~ll~~L~~~~L~~-----~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 246 TKLISTLIYKFLNV-----PMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp SSHHHHHHHHTSSS-----HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCC-----hHHHHHHHHHHHHHHh
Confidence 88888774 55543 7889999999998876
No 188
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=84.67 E-value=0.88 Score=43.23 Aligned_cols=47 Identities=11% Similarity=0.035 Sum_probs=36.0
Q ss_pred ceeCcccccccCCCeec-CCCccccHHHHHHHHhcC-CCCCCCCCCCCC
Q 009036 45 EFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLG-FTPTLVDGTTPD 91 (546)
Q Consensus 45 ~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~ 91 (546)
-..|.||.++..-=+.= .|++.|-+.|+.+|++.. ...||.|+...+
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 34599999987743332 389999999999999763 458999987644
No 189
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=83.39 E-value=3.6 Score=36.48 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=61.4
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~ 298 (546)
..++..|.++|++.++.+|..|+..|-.+.+.+ ......+....++.-|+.++.. .++.+++.++..|...+.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999984 4566778888899999998875 678999999888876654
No 190
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=82.71 E-value=12 Score=43.09 Aligned_cols=188 Identities=11% Similarity=0.024 Sum_probs=107.8
Q ss_pred hhHHHHHHhcCCC---CHHHHHHHHHHHHHHhcc-Chh----hhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhh
Q 009036 227 EQEDYFVQKLKSP---QVHEVEEALISLRKLTRS-REE----TRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLS 297 (546)
Q Consensus 227 ~~i~~lv~~L~s~---~~~~~~~Al~~L~~La~~-~~~----~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs 297 (546)
++.......|..+ +.++|.-|+..|.+..+. +++ .+.. ....++..+...-. .....++...+.+|..+.
T Consensus 40 ~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~-lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~ 118 (980)
T 3ibv_A 40 TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQM-IRDSVWSYIKELSFLDEPAYISNAVQHLLTLLF 118 (980)
T ss_dssp THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHH-HHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHH-HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Confidence 3455555666443 688899999999876652 112 2222 22223333333110 234567777888887776
Q ss_pred cCCchHHHHHhcCChHHHHHHHccCCH-HHHHHHHHHHhhcccc----c------------chhhHHhhc---CChHHHH
Q 009036 298 LEKINKMLIVRSGLVPPIVDVLMAGSA-EAQEHACGAIFSLALD----D------------QNKTAIGVL---GALPPLL 357 (546)
Q Consensus 298 ~~~~nk~~i~~~g~l~~Lv~lL~~~~~-~~~~~Aa~~L~~Ls~~----~------------~~k~~i~~~---g~l~~Lv 357 (546)
...-... =.+.++-|+.++..++. .......++|..+... . +.|..+... ..++.++
T Consensus 119 ~~~~p~~---Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~ 195 (980)
T 3ibv_A 119 LQLYPSN---WNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVY 195 (980)
T ss_dssp HHHTTTT---CTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHhCccc---CchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHH
Confidence 5311000 02467777777776543 3444555566533221 0 002333221 1134444
Q ss_pred Hhhcc----CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhC
Q 009036 358 HLLKS----DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLAS 419 (546)
Q Consensus 358 ~lL~~----~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~ 419 (546)
.+|.. .++.++..++.+|.....+-+ -..++....++.+..+|.++.+++.|+.+|..+..
T Consensus 196 ~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~ 260 (980)
T 3ibv_A 196 EMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQIEELRCAACETMTEIVN 260 (980)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 44433 677888888888888776533 34455668899999999888889999998888874
No 191
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=82.70 E-value=17 Score=34.22 Aligned_cols=136 Identities=16% Similarity=0.037 Sum_probs=89.8
Q ss_pred hhHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHH-HHccCCHHHHHHHHHHHHHhhc--CCch
Q 009036 227 EQEDYFVQKL-KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRS-LIISRYTNVQVNAVAALVNLSL--EKIN 302 (546)
Q Consensus 227 ~~i~~lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~-lL~s~~~~v~~~A~~~L~nLs~--~~~n 302 (546)
+.+..+...| ++...++|.-|+..|..+ . .....++.+.. +-...+-.|++.+..++..++. +++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~---------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S---------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T---------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c---------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 4444555556 555678888888877665 2 11245677776 5556788999999999988764 232
Q ss_pred HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcC-ChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036 303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLG-ALPPLLHLLKSDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g-~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 381 (546)
..++.+...+.+.+..+|..|...+.--+.....+ .+.. +++.|-.+..+.+.-+++..++.|..++..
T Consensus 139 -------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 15677888899999999999888775422211111 1111 334444445556788999999999999985
Q ss_pred ch
Q 009036 382 KS 383 (546)
Q Consensus 382 ~~ 383 (546)
++
T Consensus 209 ~P 210 (240)
T 3l9t_A 209 FP 210 (240)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 192
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=82.33 E-value=3.9 Score=35.62 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=62.2
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHcc------CCHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLIIS------RYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~s------~~~~v~~~A~~~L~nLs~ 298 (546)
..++..|.++|++.++.+|..|+..|-.+.+.+ ......+.+..++.-|+.++.. .+..+++.++..|...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999984 4567788888999999998863 478999999988887664
No 193
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=82.22 E-value=9.6 Score=37.22 Aligned_cols=148 Identities=9% Similarity=0.056 Sum_probs=88.8
Q ss_pred chhHHHHHHhcCCC------CHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKSP------QVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLIISRYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s~------~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 298 (546)
...+..+...|+++ +.+.-..|+..|..++.+-...-+.+. +...+..|+ +....++.+++.|..+|.....
T Consensus 21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR 99 (315)
T 3qml_C 21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence 45566666777666 556678899999999986544444443 444454444 3345677899999999987666
Q ss_pred C-CchHHHHHhc--CChHHHHHHHcc-------CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC--CHH
Q 009036 299 E-KINKMLIVRS--GLVPPIVDVLMA-------GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD--SER 366 (546)
Q Consensus 299 ~-~~nk~~i~~~--g~l~~Lv~lL~~-------~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~--~~~ 366 (546)
+ |.....|.+. ..+..++.-|.. ...-++..-+.+|..|..+... + ...++..|.+++... ++.
T Consensus 100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHH
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHH
Confidence 4 5555555432 445555544432 2334445556666666665421 1 133556666666555 677
Q ss_pred HHHHHHHHHHHh
Q 009036 367 TQHDSALALYHL 378 (546)
Q Consensus 367 ~~~~A~~aL~~L 378 (546)
++..++..+..+
T Consensus 176 ~k~Kvl~li~d~ 187 (315)
T 3qml_C 176 LQIKVLELISKI 187 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776665554
No 194
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=82.01 E-value=24 Score=35.67 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC--ch-HHHHH---------
Q 009036 240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK--IN-KMLIV--------- 307 (546)
Q Consensus 240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~--~n-k~~i~--------- 307 (546)
+.+.+...+++|+.+..........+.....|..|...|.+.++.++..|+.+|..++..+ ++ ...+.
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~ 212 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 212 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence 4577888999999998765444555556889999999999999999999999998888753 33 33332
Q ss_pred -hcCChHHHHHHHcc-CCHHHHHHHHHHHhhccccc---chhhHHhh---cCChHHHHHhhcc-CCHH
Q 009036 308 -RSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDD---QNKTAIGV---LGALPPLLHLLKS-DSER 366 (546)
Q Consensus 308 -~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~---~~k~~i~~---~g~l~~Lv~lL~~-~~~~ 366 (546)
+..-+..++..|.+ .+.+.+..+..++..+.... +.+..+.. .-++..++.-|+. +++.
T Consensus 213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~ 280 (383)
T 3eg5_B 213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENED 280 (383)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHH
T ss_pred CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChh
Confidence 23457888898887 47888888877777766543 23444432 3455556665665 3443
No 195
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=81.39 E-value=18 Score=33.86 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCc--h-HHHHH---------
Q 009036 240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKI--N-KMLIV--------- 307 (546)
Q Consensus 240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~--n-k~~i~--------- 307 (546)
+.+.+..++.+|+.+..........+.....+..|...|.++++.++..++.+|..++..+. + ...+.
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~ 146 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 146 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence 34667888999999887654455555668899999999999999999999999988887543 4 33332
Q ss_pred -hcCChHHHHHHHcc-CCHHHHHHHHHHHhhcccccc---hhhHHhh---cCChHHHHHhhcc-CCHHH
Q 009036 308 -RSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDDQ---NKTAIGV---LGALPPLLHLLKS-DSERT 367 (546)
Q Consensus 308 -~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~---~k~~i~~---~g~l~~Lv~lL~~-~~~~~ 367 (546)
+..-+..+++.|++ .+.+.+..++..+..+....+ .|..+.. .-++..++.-|+. +++++
T Consensus 147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L 215 (233)
T 2f31_A 147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 215 (233)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHH
T ss_pred CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHH
Confidence 22467778888874 467888777777776655442 2444432 3466666666654 44443
No 196
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=81.35 E-value=4.3 Score=34.99 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=61.3
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 298 (546)
..++..|.++|++.++.+|..|+..|..+.+.+. .....+.+..++.-|+.++...++.++..++..+...+.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999988754 456677778889999998887889999999988887654
No 197
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=81.11 E-value=1 Score=47.89 Aligned_cols=138 Identities=12% Similarity=0.030 Sum_probs=91.9
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~ 305 (546)
..+..++..+....|+++-.++-.|+.+ + ..+. =.++++.++..|.+.|.+++..|+.+|.-++ .++...
T Consensus 263 ~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~------DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~- 333 (800)
T 3oc3_A 263 DIIEQLVGFLDSGDWQVQFSGLIALGYL-K------EFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDSLD- 333 (800)
T ss_dssp CHHHHHTTGGGCSCHHHHHHHHHHHHHT-G------GGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHH-
T ss_pred HHHHHHHhhcCCCCeeehhhhHHHHHHH-H------HHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhhHH-
Confidence 4556666666888999999999999988 1 1111 2567888888899999999999999999887 222211
Q ss_pred HHhcCChHHHHHHHccCC--HHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 009036 306 IVRSGLVPPIVDVLMAGS--AEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLS 379 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~--~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls 379 (546)
.++..+.+.|.+-+ .......+.+|..|...+.. .-.....+|.|..+|++.-..+|..++.+|..+.
T Consensus 334 ----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 334 ----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp ----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred ----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 23444455555321 11222334445554443321 1112478899999999999999999999988876
No 198
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=80.42 E-value=4.2 Score=36.39 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=61.8
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc------CCHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS------RYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s------~~~~v~~~A~~~L~nLs~ 298 (546)
..++..|.++|++.++.+|..|+..|-.+.+.+. .....+.+..++.-|+.++.. .+..+++.++..|...+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999854 567788888999999999862 468999999998887664
No 199
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=79.03 E-value=6.7 Score=34.19 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=61.6
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHc------cCCHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLII------SRYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~------s~~~~v~~~A~~~L~nLs~ 298 (546)
..++..|.++|++.++.+|..|+..|-.+.+.+. .....+....++.-|+.++. ..+..++..++..|...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999998755 45677788889999999986 3578999999998887764
No 200
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=78.97 E-value=1.9 Score=40.97 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=30.6
Q ss_pred hcCCCCHHHHHHHHHHH-----HHHhcc-ChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHH
Q 009036 235 KLKSPQVHEVEEALISL-----RKLTRS-REETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291 (546)
Q Consensus 235 ~L~s~~~~~~~~Al~~L-----~~La~~-~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~ 291 (546)
.+.+.+++++..++..| ..++.+ ++..|......-..+.|..++.+++..++..++.
T Consensus 58 ll~d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 58 YLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp GTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHH
Confidence 34666777777776432 223222 2233444443222345556666777777776665
No 201
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=78.04 E-value=0.4 Score=30.68 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=13.5
Q ss_pred CceeCcccccccCCCee
Q 009036 44 GEFLCPVSGSLMADPVV 60 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~ 60 (546)
+-|+||||+.-+..|-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 35999999998887743
No 202
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=77.84 E-value=40 Score=39.58 Aligned_cols=125 Identities=11% Similarity=0.052 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHH--ccCCHHHHHHHHHHHHHhhcC------CchHHHHHhcCC
Q 009036 240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLI--ISRYTNVQVNAVAALVNLSLE------KINKMLIVRSGL 311 (546)
Q Consensus 240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL--~s~~~~v~~~A~~~L~nLs~~------~~nk~~i~~~g~ 311 (546)
+.+.|.+|-..|..+-+.. .+...+...| .+.+..++..|+..|.+.... ++.+..|. ...
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~l 94 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSV 94 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHH
T ss_pred ChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHH
Confidence 6677888888887765432 2233333333 355888999999888876532 23343333 223
Q ss_pred hHHHHHHHcc---CCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036 312 VPPIVDVLMA---GSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHLSL 380 (546)
Q Consensus 312 l~~Lv~lL~~---~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~ 380 (546)
+..+...-.. ....++...+.++..++..+-. .. ...++.|+.++.. +...+..++.+|..|+.
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 3333322111 3577888888888887654311 11 4678888888876 45566778888888764
No 203
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=77.81 E-value=26 Score=40.60 Aligned_cols=163 Identities=16% Similarity=0.122 Sum_probs=94.5
Q ss_pred hHHHHHHHHcc----CCHHHHHHHHHHHHHhhc----CCchHHHHHhcCChHHHH----HHHccCCHHHHHHHHHHHhhc
Q 009036 270 LLLALRSLIIS----RYTNVQVNAVAALVNLSL----EKINKMLIVRSGLVPPIV----DVLMAGSAEAQEHACGAIFSL 337 (546)
Q Consensus 270 ~i~~Lv~lL~s----~~~~v~~~A~~~L~nLs~----~~~nk~~i~~~g~l~~Lv----~lL~~~~~~~~~~Aa~~L~~L 337 (546)
.+..+..++.+ .++.+++.++.++..|.. +... .....++.+. +.+..++.+-+..++.+|.|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~----c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS----CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS----CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 56666667754 356666667666665543 2111 0112244444 444566777788889999998
Q ss_pred ccccchhhHHhhcCChHHHHHhhcc-------CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc----hH
Q 009036 338 ALDDQNKTAIGVLGALPPLLHLLKS-------DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG----HM 406 (546)
Q Consensus 338 s~~~~~k~~i~~~g~l~~Lv~lL~~-------~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~----~~ 406 (546)
-. ...++.|.+++.. ...+++..|+++|..+..... +. +-+.|+.++.+. ++
T Consensus 468 g~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---~~----v~~il~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 468 GQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---RK----VQEIVLPIFLNVAIKSEL 530 (1056)
T ss_dssp TC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---HH----HHHHHHHHHHCTTSCHHH
T ss_pred CC----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---HH----HHHHHHHHhcCCCCChHH
Confidence 33 4467777777742 246788899999998865321 11 234566666543 24
Q ss_pred HHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036 407 TGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG 464 (546)
Q Consensus 407 ~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~ 464 (546)
+-.|+.+|. -.+|. ...+..++..+... .+..+.-.....|.+++..
T Consensus 531 RiaA~~~Lm--~t~P~-------~~~l~~ia~~l~~E--~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 531 RIRSCIVFF--ESKPS-------VALVSMVAVRLRRE--PNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHH--HTCCC-------HHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH--HHCcC-------HHHHHHHHHHHhhC--chHHHHHHHHHHHHHHHhc
Confidence 444444433 22222 12446666667664 3567777777777777764
No 204
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=77.67 E-value=15 Score=38.20 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=79.4
Q ss_pred cCCHHHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHH
Q 009036 362 SDSERTQHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVG 438 (546)
Q Consensus 362 ~~~~~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~ 438 (546)
+++.+.++.|+..|..... .++.... ++..+++++.+.+ ++..|++-|..+|.. +.... .+..|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHH
Confidence 4678999999998888765 4544433 6778999998765 889999999999987 54443 3467788
Q ss_pred HHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 009036 439 MLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLE 501 (546)
Q Consensus 439 lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~ 501 (546)
+|.. .+......+-.+|..|-..++ .+.+..|..-+..+++.+|+++...|+
T Consensus 108 lLqt---dd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 108 LLQT---DDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HTTC---CCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHhc---cchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 8887 344555555555555544221 123455555555567888888777663
No 205
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=76.59 E-value=52 Score=38.00 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=74.4
Q ss_pred ChHHHHHHHcc----CCHHHHHHHHHHHhhccc----ccchhhHHhhcCChHHHHHh----hccCCHHHHHHHHHHHHHh
Q 009036 311 LVPPIVDVLMA----GSAEAQEHACGAIFSLAL----DDQNKTAIGVLGALPPLLHL----LKSDSERTQHDSALALYHL 378 (546)
Q Consensus 311 ~l~~Lv~lL~~----~~~~~~~~Aa~~L~~Ls~----~~~~k~~i~~~g~l~~Lv~l----L~~~~~~~~~~A~~aL~~L 378 (546)
.+..+..++.+ .++.++..+.-++..|.. ..... ....++.+.+. +..++.+-+..++.+|.|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 34555666654 356677666666666542 21110 11224444444 4556777778899999998
Q ss_pred hcCchhHHHHHhcCcHHHHHHHHhC-----c----hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHH
Q 009036 379 SLVKSNRTKLVKLGSVNALLGMVNS-----G----HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSES 449 (546)
Q Consensus 379 s~~~~n~~~iv~~Gav~~Lv~lL~~-----~----~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~ 449 (546)
-.. ..++.|..++.. . .++..|+.+|.+++.... . -+-+.++.++.+.. .+.+
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p--~-----~v~~il~~i~~n~~-e~~E 529 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP--R-----KVQEIVLPIFLNVA-IKSE 529 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH--H-----HHHHHHHHHHHCTT-SCHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch--H-----HHHHHHHHHhcCCC-CChH
Confidence 552 356777777642 1 266678888888874311 1 12355677775532 4577
Q ss_pred HHHHHHHHHHH
Q 009036 450 TQESCVSVLYA 460 (546)
Q Consensus 450 ~~e~Av~~L~~ 460 (546)
++-.|+.+|..
T Consensus 530 vRiaA~~~Lm~ 540 (1056)
T 1lsh_A 530 LRIRSCIVFFE 540 (1056)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 206
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=74.49 E-value=50 Score=38.72 Aligned_cols=178 Identities=12% Similarity=0.006 Sum_probs=100.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcc-----ChhhhHHhhcCChHHHHHHHHc---cCCHHHHHHHHHHHHHhhcCCchHHHHHh
Q 009036 237 KSPQVHEVEEALISLRKLTRS-----REETRVSLCTPRLLLALRSLII---SRYTNVQVNAVAALVNLSLEKINKMLIVR 308 (546)
Q Consensus 237 ~s~~~~~~~~Al~~L~~La~~-----~~~~r~~l~~~g~i~~Lv~lL~---s~~~~v~~~A~~~L~nLs~~~~nk~~i~~ 308 (546)
.+.+..+|.-|+..|++..+. +++.|..+. ..++..+..... .....++...+.++..++..+--.. =
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~---W 132 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH---W 132 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT---C
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc---c
Confidence 355778888899888887643 223333332 223333322211 1357788888888888776421110 0
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHhhcccc---cc----h-----hhHHhh--cCChHHHHHhhcc------------
Q 009036 309 SGLVPPIVDVLMAGSAEAQEHACGAIFSLALD---DQ----N-----KTAIGV--LGALPPLLHLLKS------------ 362 (546)
Q Consensus 309 ~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~---~~----~-----k~~i~~--~g~l~~Lv~lL~~------------ 362 (546)
.+.++.|+.++++ +...+..+..+|..|+.+ .+ . +..+.. ...++.+..+|..
T Consensus 133 p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~ 211 (1204)
T 3a6p_A 133 PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDT 211 (1204)
T ss_dssp TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 2567888888876 556677788888877543 11 1 111221 1223333333432
Q ss_pred -------CCHHHHHHHHHHHHHhhcCchhHHHHHhc--CcHHHHHHHHhCchHHHHHHHHHHHhhCC
Q 009036 363 -------DSERTQHDSALALYHLSLVKSNRTKLVKL--GSVNALLGMVNSGHMTGRVLLILGNLASC 420 (546)
Q Consensus 363 -------~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~--Gav~~Lv~lL~~~~~~e~al~~L~nLa~~ 420 (546)
.+..++..++.++.+...+-.. ..+++. ..++.+..++.+..++..|+.+|..+...
T Consensus 212 ~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 212 SQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTC
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhC
Confidence 1233556666676665554332 222333 26777777777777899999999999863
No 207
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=73.91 E-value=10 Score=43.84 Aligned_cols=101 Identities=10% Similarity=0.133 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-----CCHHHHHHHHHHHHHhhcC-CchHHHHHhcCC
Q 009036 238 SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-----RYTNVQVNAVAALVNLSLE-KINKMLIVRSGL 311 (546)
Q Consensus 238 s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-----~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~ 311 (546)
..+|..++.++..+..++.........-.-..+++.|..+... +++.++..++.++...+.. ..+.. ... .+
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-~l~-~v 541 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FLR-TV 541 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HHH-HH
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH-HHH-HH
Confidence 3578999999999998876432211110111244444443321 2334444577788766642 11222 221 35
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHhhcccc
Q 009036 312 VPPIVDVLMAGSAEAQEHACGAIFSLALD 340 (546)
Q Consensus 312 l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~ 340 (546)
++.|+..|.+.++.++..|+.+|.+++..
T Consensus 542 l~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 77777778888899999999999999874
No 208
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=73.55 E-value=1.1 Score=27.36 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=14.2
Q ss_pred CCceeCcccccccCCCe
Q 009036 43 PGEFLCPVSGSLMADPV 59 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV 59 (546)
|..|.||+|+.-|-||=
T Consensus 1 ~~k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMD 17 (28)
T ss_dssp CCCEECTTSSCEESSHH
T ss_pred CCcccCccccccCcChH
Confidence 46799999999988873
No 209
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=73.24 E-value=7.2 Score=30.50 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=36.5
Q ss_pred CceeCcccccc-----cCCCeec--CCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036 44 GEFLCPVSGSL-----MADPVVV--SSGHTFERACAHVCKTLGFTPTLVDGTTPD 91 (546)
Q Consensus 44 ~~~~CpI~~~~-----m~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 91 (546)
..-.|.||++= =-||.+. .|+-..||.|.+-=.+.++..||.|...+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 33579999874 1235554 788999999998777789999999987664
No 210
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=73.07 E-value=53 Score=33.13 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCc--h-HHHH----------
Q 009036 240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKI--N-KMLI---------- 306 (546)
Q Consensus 240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~--n-k~~i---------- 306 (546)
+.+.+..++.+|+.+..........+....++..|...|.+.++.++..++.+|..++..+. + ...+
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 35667888999999887655555556678899999999999999999999999988887543 3 3333
Q ss_pred HhcCChHHHHHHHcc-CCHHHHHHHHHHHhhcccccc---hhhHHhh---cCChHHHHHhhcc-CCHHH
Q 009036 307 VRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDDQ---NKTAIGV---LGALPPLLHLLKS-DSERT 367 (546)
Q Consensus 307 ~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~---~k~~i~~---~g~l~~Lv~lL~~-~~~~~ 367 (546)
.+..-+..|+..|.. .+.+.+..++.++..+....+ .|..+.. .-++..++.-|+. +++.+
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence 123467788888874 477888777777777665542 2444432 3466666666665 45544
No 211
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=72.99 E-value=28 Score=34.73 Aligned_cols=118 Identities=10% Similarity=0.039 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHc-c
Q 009036 243 EVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLM-A 321 (546)
Q Consensus 243 ~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~-~ 321 (546)
+...+...|..| -++.....-++..+++..+.....-++.++....+..|+..+....-... --...+|.++..+. +
T Consensus 259 VvtR~FDLL~LL-mHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t-~L~e~LPFi~~~i~~h 336 (619)
T 3c2g_A 259 VIIRTFDLLGLL-LHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT-PLENILPFLLRLIEIH 336 (619)
T ss_dssp HHHHHHHHHHHH-CCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS-CCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-hcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc-cccccchHHHHHhccC
Confidence 344555555444 44566778889999999999999999999999999999988754221100 01245788888776 6
Q ss_pred CCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhcc
Q 009036 322 GSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKS 362 (546)
Q Consensus 322 ~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~ 362 (546)
++.++.-...+.|.|...+. ..|+.....|+|..|-..+..
T Consensus 337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 68999999999999988776 446666678999988887653
No 212
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=72.74 E-value=8.8 Score=35.89 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=61.1
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~ 298 (546)
..++..|.++|++.++.+|..|+..|-.+.+... .....+....++..|+.++.. .+..+++.++..|...+.
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999988744 467777788888888888864 578999999998887764
No 213
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.60 E-value=12 Score=34.70 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=60.5
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~ 298 (546)
.+++..|.++|++.++.+|..|+..|-.+.+... .....+.+..++..|+.++.. .+..+++.++..+...+.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999864 466777888899999988864 478899888888776653
No 214
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=68.05 E-value=64 Score=32.20 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=82.8
Q ss_pred HHHhhcCCch-HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc-cCCHHHHHH
Q 009036 293 LVNLSLEKIN-KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK-SDSERTQHD 370 (546)
Q Consensus 293 L~nLs~~~~n-k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~-~~~~~~~~~ 370 (546)
|+||..++.| -.-+++..++..+..+..-.+.++......+|...+...... .+--...+|.++..+. +++.++.-.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~-~t~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA-KTPLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG-TSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHh-hccccccchHHHHHhccCCCcceEEe
Confidence 6677777655 567889999999999999999998888888887765432211 1111356777887775 467888888
Q ss_pred HHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHHhC
Q 009036 371 SALALYHLSLVK-SNRTKLVKLGSVNALLGMVNS 403 (546)
Q Consensus 371 A~~aL~~Ls~~~-~n~~~iv~~Gav~~Lv~lL~~ 403 (546)
....|.|..... ..++..+..|+|..|-..+..
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 889999987754 467778888999999998864
No 215
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=65.79 E-value=1.8e+02 Score=33.54 Aligned_cols=216 Identities=8% Similarity=0.023 Sum_probs=124.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhhccccc------c
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDD------Q 342 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~------~ 342 (546)
.+..++..+.+++.+.+..|-..|..+-..++ +...+..+|.. .++.+|..|+.+|.+..... +
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 45556666666777778888888877655443 33344445544 48999999999998875432 2
Q ss_pred hhhHHhhcCChHHHHHhhcc-----CCHHHHHHHHHHHHHhhc--CchhHHHHHhc-CcHHHHHHHHhCc-hHHHHHHHH
Q 009036 343 NKTAIGVLGALPPLLHLLKS-----DSERTQHDSALALYHLSL--VKSNRTKLVKL-GSVNALLGMVNSG-HMTGRVLLI 413 (546)
Q Consensus 343 ~k~~i~~~g~l~~Lv~lL~~-----~~~~~~~~A~~aL~~Ls~--~~~n~~~iv~~-Gav~~Lv~lL~~~-~~~e~al~~ 413 (546)
.+..|.+ ..+..+...-.+ .++.++...+.+|..+.. +++ .. ..++.|+.++... ..++..+.+
T Consensus 100 ~~~~LR~-~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~------~Wp~fi~dLv~~~~~~~~~~~~~L~I 172 (1073)
T 3gjx_A 100 QCEGIKK-YVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK------HWPTFISDIVGASRTSESLCQNNMVI 172 (1073)
T ss_dssp HHHHHHH-HHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh------hccHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2333322 233333333221 235555556666666654 222 12 5677777777533 366778888
Q ss_pred HHHhhCC--c-------cc-----HHHHHhC--CcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCc
Q 009036 414 LGNLASC--S-------DG-----RVAVLDS--GGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGM 477 (546)
Q Consensus 414 L~nLa~~--~-------e~-----r~~i~~~--g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~ 477 (546)
|..|+.. . .. ++.+.+. ..+..+..+|... .++.....++.+|.....--+ -..+.+.+.
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~--~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~l 248 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENS--QNAPLVHATLETLLRFLNWIP--LGYIFETKL 248 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTTSC--THHHHSSSH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHhcC--HHHhccchH
Confidence 8888753 0 01 2233332 1333333445443 356677778888877765321 234555667
Q ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036 478 AEVLM-RMERVGSEHVKEKAKRMLELMKGRA 507 (546)
Q Consensus 478 v~~L~-~ll~~~s~~~k~~A~~lL~~L~~~~ 507 (546)
++.|+ .++ .++..+..|.++|..+....
T Consensus 249 l~~L~~~~L--~~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 249 ISTLIYKFL--NVPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp HHHHHHHTS--SSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHHHhcc
Confidence 77664 444 57889999999999887653
No 216
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=65.55 E-value=3.2 Score=39.48 Aligned_cols=84 Identities=10% Similarity=0.008 Sum_probs=40.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHH-----HHhhcCC--chHH
Q 009036 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAAL-----VNLSLEK--INKM 304 (546)
Q Consensus 232 lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L-----~nLs~~~--~nk~ 304 (546)
+...++..++.++..++..| . .+.|..++.+++..++..++..+ ..+..++ ..+.
T Consensus 103 L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~ 164 (244)
T 1lrv_A 103 LSALMFDEDREVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRK 164 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHH
Confidence 44455667777777766642 0 01223334444555554444321 1122221 2233
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHH
Q 009036 305 LIVRSGLVPPIVDVLMAGSAEAQEHACGA 333 (546)
Q Consensus 305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~ 333 (546)
.++..-..+.|..++++.+.++|..++..
T Consensus 165 ~aa~~l~~~ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 165 LVAKRLPEESLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp HHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHh
Confidence 33332233444456667778888777754
No 217
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=64.17 E-value=20 Score=31.28 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=58.7
Q ss_pred chhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHH-HHHHHcc---CCHHHHHHHHHHHHHhhc
Q 009036 226 NEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLA-LRSLIIS---RYTNVQVNAVAALVNLSL 298 (546)
Q Consensus 226 ~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~-Lv~lL~s---~~~~v~~~A~~~L~nLs~ 298 (546)
..++..|.++|+ ..++.+|..|+..|-.+.+.+ ......+.+..++.- |+.++.. .+..+++.++..|...+.
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 467888999997 489999999999999999985 566777888889987 7888742 356888888888876654
No 218
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=64.03 E-value=34 Score=32.10 Aligned_cols=141 Identities=16% Similarity=0.009 Sum_probs=87.1
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHH-HHccCCHHHHHHHHHHHhhccc-ccchhhHH
Q 009036 270 LLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVD-VLMAGSAEAQEHACGAIFSLAL-DDQNKTAI 347 (546)
Q Consensus 270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i 347 (546)
.++....+..++.-+++-.|+.+|..+ . .. ...++.+.. +-...+-.++..++.++..++. .+.
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p----- 137 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY----- 137 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH-----
Confidence 344555566677778998888888776 2 11 124555555 3345578999999999988764 211
Q ss_pred hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccH
Q 009036 348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGR 424 (546)
Q Consensus 348 ~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r 424 (546)
...++.+...+.+++..+++.|...+.--+....- +.--.-+++.|-.+..+++ ++......|..++. .|+-.
T Consensus 138 --e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~--k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 138 --KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF--KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp --TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT--TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh--hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 12677888899999999999998876532221100 0000013444444444554 78888889999986 44444
Q ss_pred HHHH
Q 009036 425 VAVL 428 (546)
Q Consensus 425 ~~i~ 428 (546)
..++
T Consensus 214 ~~~~ 217 (240)
T 3l9t_A 214 KIEL 217 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 219
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=58.06 E-value=2.9 Score=28.64 Aligned_cols=14 Identities=36% Similarity=0.947 Sum_probs=12.1
Q ss_pred CCCCCceeCccccc
Q 009036 40 AEPPGEFLCPVSGS 53 (546)
Q Consensus 40 ~~~p~~~~CpI~~~ 53 (546)
.++|+++.||+|+.
T Consensus 25 ~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 25 DQLPDDWCCPVCGV 38 (46)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCcCCCC
Confidence 36899999999985
No 220
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.71 E-value=16 Score=34.10 Aligned_cols=71 Identities=8% Similarity=0.058 Sum_probs=55.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC--chHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhccc
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEK--INKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLAL 339 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~--~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~ 339 (546)
.++..|.+-|.+.++.++..|+.+|-.+..+. .....|....++..|+.+++.. +.+++..++.+|...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 45788888899999999999999999888763 3455666667788888888754 78899888888876643
No 221
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=56.64 E-value=25 Score=30.08 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=52.2
Q ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036 432 GVECLVGMLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~ 505 (546)
++..|.+.|.. .++..+..|+.+|-.+..+ +..+..++.....+..|..++...++.+++++.+++.....
T Consensus 43 a~rai~Krl~~---~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNH---KDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 56677777876 4688899998888776653 44555555444466777778777889999999999987764
No 222
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=55.94 E-value=5.4 Score=28.06 Aligned_cols=15 Identities=33% Similarity=0.917 Sum_probs=12.9
Q ss_pred CCCCCCceeCccccc
Q 009036 39 TAEPPGEFLCPVSGS 53 (546)
Q Consensus 39 ~~~~p~~~~CpI~~~ 53 (546)
-.++|+++.||+|+.
T Consensus 30 f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 30 FEDLPDDWACPVCGA 44 (52)
T ss_dssp TTSSCTTCCCSSSCC
T ss_pred hHHCCCCCcCCCCCC
Confidence 357899999999986
No 223
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=55.11 E-value=29 Score=30.51 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=52.5
Q ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhhc
Q 009036 432 GVECLVGMLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERV-GSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~-~s~~~k~~A~~lL~~L~~ 505 (546)
++..|.+.|.. .++.++..|+.+|-.+..+ +..+..++.....+..|+.++.. .++.+++++.++|..-..
T Consensus 53 A~ral~krl~~---~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNH---KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 55677777776 4688899999888777664 45566565555567777777764 568999999999987764
No 224
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.06 E-value=13 Score=34.51 Aligned_cols=70 Identities=7% Similarity=0.008 Sum_probs=53.7
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC--chHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcc
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEK--INKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLA 338 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~--~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls 338 (546)
.++..|.+-|.+.++.++..|+.+|-.+..+. .....|....++..|+.++.+. +.+++..++.++..-+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 45777888888999999999999999888764 3445566666888888888754 6788888877776543
No 225
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=51.39 E-value=1.8e+02 Score=28.27 Aligned_cols=148 Identities=9% Similarity=0.026 Sum_probs=94.2
Q ss_pred ChHHHHHhhccC------CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC----chHHHHHHHHHHHhhC-C
Q 009036 352 ALPPLLHLLKSD------SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS----GHMTGRVLLILGNLAS-C 420 (546)
Q Consensus 352 ~l~~Lv~lL~~~------~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~----~~~~e~al~~L~nLa~-~ 420 (546)
.+..+..+++++ +......|+..|..++-.-..-.+|++.. ...|-.++.. ..+++.|.++|..--+ +
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccC
Confidence 344556666665 34456778888888877666666777632 3333343322 2378888888877655 5
Q ss_pred cccHHHHHh--CCcHHHHHHHHcc----CCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC--CHHH
Q 009036 421 SDGRVAVLD--SGGVECLVGMLRK----GTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG--SEHV 492 (546)
Q Consensus 421 ~e~r~~i~~--~g~i~~Lv~lL~~----~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~--s~~~ 492 (546)
|.....+.+ ...+..+..-|.. ...........-+++|-.|...+..+. ...+..|.+++..+ .+.+
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccCCCCHHH
Confidence 555565554 4566665554433 222245666777888888887653332 33568888887777 9999
Q ss_pred HHHHHHHHHHhhc
Q 009036 493 KEKAKRMLELMKG 505 (546)
Q Consensus 493 k~~A~~lL~~L~~ 505 (546)
|.++..++..+-.
T Consensus 177 k~Kvl~li~d~f~ 189 (315)
T 3qml_C 177 QIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999999987763
No 226
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=51.19 E-value=23 Score=30.38 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=51.1
Q ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-CChhhHHHHHHC-CcHHHHHHHHhc-----C---CHHHHHHHHHHHH
Q 009036 432 GVECLVGMLRKGTELSESTQESCVSVLYALSH-GGLRFKGLAAAA-GMAEVLMRMERV-----G---SEHVKEKAKRMLE 501 (546)
Q Consensus 432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~-~~~~~~~~~~~~-g~v~~L~~ll~~-----~---s~~~k~~A~~lL~ 501 (546)
++..|.+.|.. .++..+..|+.+|-.||. +++.+...+++. ..|..|..+--. | ...+|+.|.+++.
T Consensus 50 im~~L~kRL~~---k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 50 FSEFILKRLDN---KSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHTS---SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 44667777777 457899999999999997 566777766553 233444333111 1 3779999999999
Q ss_pred HhhcCCc
Q 009036 502 LMKGRAE 508 (546)
Q Consensus 502 ~L~~~~~ 508 (546)
.|.....
T Consensus 127 ll~d~~~ 133 (140)
T 1vdy_A 127 AIFSEEN 133 (140)
T ss_dssp HHTCCSS
T ss_pred HHhCcCC
Confidence 9987654
No 227
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=51.14 E-value=7.1 Score=30.17 Aligned_cols=16 Identities=25% Similarity=0.646 Sum_probs=13.3
Q ss_pred CCCCCCceeCcccccc
Q 009036 39 TAEPPGEFLCPVSGSL 54 (546)
Q Consensus 39 ~~~~p~~~~CpI~~~~ 54 (546)
-.++|+++.||+|+.-
T Consensus 54 fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 54 WDDIPDDWSCPDCGAA 69 (81)
T ss_dssp TTTSCTTCCCTTTCCC
T ss_pred hhHCCCCCcCCCCCCC
Confidence 3578999999999863
No 228
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=50.93 E-value=1.6e+02 Score=29.72 Aligned_cols=128 Identities=10% Similarity=0.055 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHHHHHc
Q 009036 242 HEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIVDVLM 320 (546)
Q Consensus 242 ~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~ 320 (546)
+++...+..+++|....+- . .=..+++.++.+-...+.+++...+..|...+.. .+.- ...++.|..+|.
T Consensus 40 ~~Kl~~L~q~~EL~l~~dp--s--Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~ 110 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDP--T--LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLR 110 (386)
T ss_dssp THHHHHHHHHHHHHHTTCG--G--GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCH--H--HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc
Confidence 5788899999987653221 1 2257889999998889999999999999877652 2221 135677888888
Q ss_pred cCCHHHHHHHHHHHhhc--------ccccch----hhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036 321 AGSAEAQEHACGAIFSL--------ALDDQN----KTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHL 378 (546)
Q Consensus 321 ~~~~~~~~~Aa~~L~~L--------s~~~~~----k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L 378 (546)
+.++.+...++.+..++ +..... ...-.. ...-..++.++.+++..++..|+..+-.+
T Consensus 111 d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 111 DENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 88888877766655443 111111 011111 22334566777778888988888766553
No 229
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=49.88 E-value=5.5 Score=28.26 Aligned_cols=14 Identities=29% Similarity=1.002 Sum_probs=12.5
Q ss_pred CCCCCceeCccccc
Q 009036 40 AEPPGEFLCPVSGS 53 (546)
Q Consensus 40 ~~~p~~~~CpI~~~ 53 (546)
.++|+++.||+|+.
T Consensus 31 e~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 31 KDIPDDWVCPLCGV 44 (54)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hHCCCCCcCcCCCC
Confidence 47999999999986
No 230
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=49.50 E-value=6.6 Score=31.32 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=10.8
Q ss_pred ccHHHHHHHHhc
Q 009036 67 FERACAHVCKTL 78 (546)
Q Consensus 67 y~r~~i~~~~~~ 78 (546)
|||.|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 231
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=49.44 E-value=29 Score=32.89 Aligned_cols=134 Identities=7% Similarity=-0.023 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHHHHHHhhcCch-hHHHHHhcCcHHHHHHHHh----C------chHHHHHHHHHHHhhCCccc-HHHHHh
Q 009036 362 SDSERTQHDSALALYHLSLVKS-NRTKLVKLGSVNALLGMVN----S------GHMTGRVLLILGNLASCSDG-RVAVLD 429 (546)
Q Consensus 362 ~~~~~~~~~A~~aL~~Ls~~~~-n~~~iv~~Gav~~Lv~lL~----~------~~~~e~al~~L~nLa~~~e~-r~~i~~ 429 (546)
+.++..+..++++++|+-.++. .+..+........+++.+. + .+++-.+..++.|++...-. +. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4567788899999999988777 5555544333444454432 1 23666778888898852110 00 1
Q ss_pred CCcHHHHHHHHccC---C---CCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHH
Q 009036 430 SGGVECLVGMLRKG---T---ELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRM 499 (546)
Q Consensus 430 ~g~i~~Lv~lL~~~---~---~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~l 499 (546)
......++..+..- . ..+.++...++-+|.+|...++..++.+...+.+....... ...+|++.-+.++
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~a~~~~~~~~~~~~~-~~e~R~~~v~~ei 252 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLANIKRSY-GNVPRFKDIFDDL 252 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCCTTTCHHHHHHHHHH-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHHhccHHHHHHHHHHc-ccchHHHHHHHhc
Confidence 23445566665531 0 02467778888888888764444443333222222222111 2467887777654
No 232
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=48.72 E-value=6.9 Score=31.16 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=10.8
Q ss_pred ccHHHHHHHHhc
Q 009036 67 FERACAHVCKTL 78 (546)
Q Consensus 67 y~r~~i~~~~~~ 78 (546)
|||.|+.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 233
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=48.50 E-value=45 Score=28.83 Aligned_cols=71 Identities=20% Similarity=0.161 Sum_probs=53.5
Q ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-CChhhHHHHHHCCcHHHHHHHHhc------CCHHHHHHHHHHHHHhh
Q 009036 432 GVECLVGMLRKGTELSESTQESCVSVLYALSH-GGLRFKGLAAAAGMAEVLMRMERV------GSEHVKEKAKRMLELMK 504 (546)
Q Consensus 432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~-~~~~~~~~~~~~g~v~~L~~ll~~------~s~~~k~~A~~lL~~L~ 504 (546)
++..|.+.|.+ .++.++..|+.+|-.+.. .+..+...+.....+.-|+.++.. .++.+|+++.+++....
T Consensus 49 a~ral~krl~~---~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQS---PQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 56677788876 568999999998887766 344566666555567778888753 57899999999998877
Q ss_pred c
Q 009036 505 G 505 (546)
Q Consensus 505 ~ 505 (546)
.
T Consensus 126 ~ 126 (149)
T 3g2s_A 126 V 126 (149)
T ss_dssp H
T ss_pred H
Confidence 4
No 234
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=48.40 E-value=71 Score=32.63 Aligned_cols=136 Identities=8% Similarity=0.074 Sum_probs=79.7
Q ss_pred HHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHH-HHHccCCHHHHHHHHHHHhhcccccch-hhHHhhcCC
Q 009036 275 RSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIV-DVLMAGSAEAQEHACGAIFSLALDDQN-KTAIGVLGA 352 (546)
Q Consensus 275 v~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv-~lL~~~~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~ 352 (546)
..++.+.. .+--++.+|+-+..++... +.+..++ ..+.+..+..+..++++|.||-..... +..+.....
T Consensus 234 ~kil~~WP--~~FPaLDLLRl~v~~p~~~------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~ 305 (425)
T 3pst_A 234 NTIRSNWE--IKTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQV 305 (425)
T ss_dssp HHHHHHCS--CCHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHH
T ss_pred HHHHHhCC--cccHHHHHHHHHHcCCchH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchh
Confidence 34454433 2444667777666654432 1232233 334455788999999999999888774 444433323
Q ss_pred hHHHHHhhcc--------CCHHHHHHHHHHHHHhhcCchh-HHHHHhcCcHHHHHHHHh-----------CchHHHHHHH
Q 009036 353 LPPLLHLLKS--------DSERTQHDSALALYHLSLVKSN-RTKLVKLGSVNALLGMVN-----------SGHMTGRVLL 412 (546)
Q Consensus 353 l~~Lv~lL~~--------~~~~~~~~A~~aL~~Ls~~~~n-~~~iv~~Gav~~Lv~lL~-----------~~~~~e~al~ 412 (546)
...++..+.. .+..++..++.+++|++...-. +. +...+..+++++. +.+...+++-
T Consensus 306 ~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLV 382 (425)
T 3pst_A 306 YKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTV 382 (425)
T ss_dssp HHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHH
Confidence 4556655431 2456778888899999873211 11 1233445555554 2347778888
Q ss_pred HHHHhhCCc
Q 009036 413 ILGNLASCS 421 (546)
Q Consensus 413 ~L~nLa~~~ 421 (546)
+|.+|....
T Consensus 383 ALGtLv~~~ 391 (425)
T 3pst_A 383 AYGNLATVE 391 (425)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 888888543
No 235
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=47.27 E-value=23 Score=31.44 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=55.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC--chHHHHHhcCChHHHHHHHcc------CCHHHHHHHHHHHhhccc
Q 009036 269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEK--INKMLIVRSGLVPPIVDVLMA------GSAEAQEHACGAIFSLAL 339 (546)
Q Consensus 269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~--~nk~~i~~~g~l~~Lv~lL~~------~~~~~~~~Aa~~L~~Ls~ 339 (546)
.++..|.+-|.+.++.++..|+.+|-.+..+. .....|....++..|+.++.. .+.+++..++.+|..-+.
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999888864 455566677789999999863 268899888888876543
No 236
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=47.19 E-value=6.5 Score=27.66 Aligned_cols=14 Identities=29% Similarity=1.068 Sum_probs=12.4
Q ss_pred CCCCCceeCccccc
Q 009036 40 AEPPGEFLCPVSGS 53 (546)
Q Consensus 40 ~~~p~~~~CpI~~~ 53 (546)
.++|+++.||+|+.
T Consensus 30 ~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 30 EDLPDDWVCPLCGA 43 (52)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 47899999999986
No 237
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=46.61 E-value=32 Score=32.64 Aligned_cols=137 Identities=8% Similarity=0.068 Sum_probs=78.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHH-HHHccCCHHHHHHHHHHHhhcccccc-hhhHHhh
Q 009036 272 LALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIV-DVLMAGSAEAQEHACGAIFSLALDDQ-NKTAIGV 349 (546)
Q Consensus 272 ~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv-~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~ 349 (546)
..+.+++.+.. .+--++.++.-+..++..- +.+..++ ..+.+..+..+..+++++.|+-.++. .+..+..
T Consensus 59 ~~~~ki~~~WP--~~fP~lDllRl~~~~~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~ 130 (253)
T 3gae_A 59 SFANTIRSNWE--IKTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLES 130 (253)
T ss_dssp HHHHHHHHHCS--CCHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTS
T ss_pred HHHHHHHHhCC--ccchHHHHHHHHHcCCchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhc
Confidence 33445554433 2444666666666554332 2333333 23345578899999999999988887 5666654
Q ss_pred cCChHHHHHhhcc--------CCHHHHHHHHHHHHHhhcCch-hHHHHHhcCcHHHHHHHHh-----------CchHHHH
Q 009036 350 LGALPPLLHLLKS--------DSERTQHDSALALYHLSLVKS-NRTKLVKLGSVNALLGMVN-----------SGHMTGR 409 (546)
Q Consensus 350 ~g~l~~Lv~lL~~--------~~~~~~~~A~~aL~~Ls~~~~-n~~~iv~~Gav~~Lv~lL~-----------~~~~~e~ 409 (546)
......++..+.+ .+..++..++.+++|++...- .+. +......+++++. +.+...+
T Consensus 131 ~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR 207 (253)
T 3gae_A 131 NQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYR 207 (253)
T ss_dssp HHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHH
T ss_pred chhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHH
Confidence 3234444444321 255677888889999987321 111 1223344555444 2236667
Q ss_pred HHHHHHHhhC
Q 009036 410 VLLILGNLAS 419 (546)
Q Consensus 410 al~~L~nLa~ 419 (546)
++-+|.+|..
T Consensus 208 ~LvAlGtL~~ 217 (253)
T 3gae_A 208 LTVAYGNLAT 217 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888875
No 238
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=46.16 E-value=36 Score=29.37 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=53.4
Q ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhc------CCHHHHHHHHHHHHHhh
Q 009036 432 GVECLVGMLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERV------GSEHVKEKAKRMLELMK 504 (546)
Q Consensus 432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~------~s~~~k~~A~~lL~~L~ 504 (546)
++..|.+.|.+ .++.++..|+.+|-.+..+ +..+...+.....+..|+.++.. .++.+++++.+++..-.
T Consensus 39 a~rai~krl~~---~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQS---PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 56777777876 5689999999998877764 55666666555677777777763 36899999999998776
Q ss_pred c
Q 009036 505 G 505 (546)
Q Consensus 505 ~ 505 (546)
.
T Consensus 116 ~ 116 (148)
T 1mhq_A 116 V 116 (148)
T ss_dssp H
T ss_pred H
Confidence 4
No 239
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=45.96 E-value=6.7 Score=27.93 Aligned_cols=14 Identities=29% Similarity=0.909 Sum_probs=12.4
Q ss_pred CCCCCceeCccccc
Q 009036 40 AEPPGEFLCPVSGS 53 (546)
Q Consensus 40 ~~~p~~~~CpI~~~ 53 (546)
.++|+++.||+|+.
T Consensus 31 ~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 31 EDIPADWVCPDCGV 44 (55)
T ss_dssp GGSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 46899999999986
No 240
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=41.72 E-value=8.2 Score=28.97 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=12.8
Q ss_pred CCCCCceeCcccccc
Q 009036 40 AEPPGEFLCPVSGSL 54 (546)
Q Consensus 40 ~~~p~~~~CpI~~~~ 54 (546)
.++|+++.||+|+.-
T Consensus 35 ~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 35 VDLSDSFMCPACRSP 49 (70)
T ss_dssp GGSCTTCBCTTTCCB
T ss_pred hhCCCCCcCCCCCCC
Confidence 468999999999863
No 241
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=38.49 E-value=10 Score=29.75 Aligned_cols=14 Identities=29% Similarity=0.871 Sum_probs=12.3
Q ss_pred CCCCCceeCccccc
Q 009036 40 AEPPGEFLCPVSGS 53 (546)
Q Consensus 40 ~~~p~~~~CpI~~~ 53 (546)
.++|+++.||+|+.
T Consensus 63 edlPddW~CPvCga 76 (87)
T 1s24_A 63 EDIPDDWCCPDCGA 76 (87)
T ss_dssp GGCCTTCCCSSSCC
T ss_pred hHCCCCCCCCCCCC
Confidence 47899999999985
No 242
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=36.36 E-value=10 Score=22.12 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=9.8
Q ss_pred ceeCcccccccCC
Q 009036 45 EFLCPVSGSLMAD 57 (546)
Q Consensus 45 ~~~CpI~~~~m~d 57 (546)
...||+|.+.|--
T Consensus 6 ~vqcpvcqq~mpa 18 (29)
T 3vhs_A 6 QVQCPVCQQMMPA 18 (29)
T ss_dssp EEECTTTCCEEEG
T ss_pred eeeChHHHHhCcH
Confidence 4579999998843
No 243
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=35.25 E-value=2.9e+02 Score=25.96 Aligned_cols=139 Identities=13% Similarity=0.064 Sum_probs=83.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhc
Q 009036 231 YFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRS 309 (546)
Q Consensus 231 ~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~ 309 (546)
.+++.-+....+++...+..+++++-+++.. +. ..+++.++.+....+.+++...+..|...+.. ++.- .
T Consensus 19 ~lln~A~~~~~~~kl~~L~qa~el~~~~dp~---ll-~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~ 89 (257)
T 3gs3_A 19 DWCNELVIASPSTKCELLAKVQETVLGSCAE---LA-EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----P 89 (257)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG---GH-HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----H
T ss_pred HHHHHhhhcCcHHHHHHHHHHHHHHHccCHh---HH-HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 4444444434478999999999977664311 11 35677777776678899999999998877642 2211 1
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHhhc--------ccccch----hhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036 310 GLVPPIVDVLMAGSAEAQEHACGAIFSL--------ALDDQN----KTAIGV-LGALPPLLHLLKSDSERTQHDSALALY 376 (546)
Q Consensus 310 g~l~~Lv~lL~~~~~~~~~~Aa~~L~~L--------s~~~~~----k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~ 376 (546)
..++.|..+|.+.++.+...+..+..++ +..+.. ...-.. ...-..++.++.+++..++..|+..+-
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e 169 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLE 169 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 3577788888888888877776655443 222211 111111 123335556666667777777776555
Q ss_pred Hh
Q 009036 377 HL 378 (546)
Q Consensus 377 ~L 378 (546)
.+
T Consensus 170 ~v 171 (257)
T 3gs3_A 170 GV 171 (257)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 244
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=34.91 E-value=22 Score=31.51 Aligned_cols=16 Identities=25% Similarity=0.634 Sum_probs=11.9
Q ss_pred CCCCceeCcccccccC
Q 009036 41 EPPGEFLCPVSGSLMA 56 (546)
Q Consensus 41 ~~p~~~~CpI~~~~m~ 56 (546)
+.+..+.||+|+.++.
T Consensus 134 ~~~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 134 EIKKVYICPICGYTAV 149 (170)
T ss_dssp CCSCEEECTTTCCEEE
T ss_pred CCCCeeEeCCCCCeeC
Confidence 4457788999887765
No 245
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=34.73 E-value=60 Score=32.47 Aligned_cols=133 Identities=8% Similarity=0.060 Sum_probs=76.5
Q ss_pred HHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHH-HHHccCCHHHHHHHHHHHhhcccccch-hhHHhhcCCh
Q 009036 276 SLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIV-DVLMAGSAEAQEHACGAIFSLALDDQN-KTAIGVLGAL 353 (546)
Q Consensus 276 ~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv-~lL~~~~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~l 353 (546)
.++.+... +--++.+|+-+..++... +.+..++ ..+.+..+..+..++++|.||-.+... +..+......
T Consensus 172 ~i~~~Wp~--~FP~LDLLRl~v~~~~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~ 243 (362)
T 3l3f_X 172 TIRSNWEI--KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVY 243 (362)
T ss_dssp HHHHHCSC--CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHH
T ss_pred HHHhhCCc--cchHHHHHHHHhcCCChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhH
Confidence 44544432 444667776666654432 2233333 334455788999999999999888774 4444332123
Q ss_pred HHHHHhhc--------cCCHHHHHHHHHHHHHhhcCch-hHHHHHhcCcHHHHHHHHh-----------CchHHHHHHHH
Q 009036 354 PPLLHLLK--------SDSERTQHDSALALYHLSLVKS-NRTKLVKLGSVNALLGMVN-----------SGHMTGRVLLI 413 (546)
Q Consensus 354 ~~Lv~lL~--------~~~~~~~~~A~~aL~~Ls~~~~-n~~~iv~~Gav~~Lv~lL~-----------~~~~~e~al~~ 413 (546)
..++..+. ..+..++..++.+++|++...- .+. +...+..+++++. +.+...+++-+
T Consensus 244 ~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVA 320 (362)
T 3l3f_X 244 KSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVA 320 (362)
T ss_dssp TTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHH
Confidence 33444331 1245677888889999987321 110 1223445555554 23467778888
Q ss_pred HHHhhC
Q 009036 414 LGNLAS 419 (546)
Q Consensus 414 L~nLa~ 419 (546)
|.+|..
T Consensus 321 LGtL~~ 326 (362)
T 3l3f_X 321 YGNLAT 326 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888885
No 246
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=31.99 E-value=1.5e+02 Score=30.20 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=63.1
Q ss_pred HccCCHHHHHHHHHHHHHhhcCCchHHHHHhc-CChHHHHHHHcc--------CCHHHHHHHHHHHhhcccccch-hhHH
Q 009036 278 IISRYTNVQVNAVAALVNLSLEKINKMLIVRS-GLVPPIVDVLMA--------GSAEAQEHACGAIFSLALDDQN-KTAI 347 (546)
Q Consensus 278 L~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~-g~l~~Lv~lL~~--------~~~~~~~~Aa~~L~~Ls~~~~~-k~~i 347 (546)
+.+..+..+-.++++|.||..++.....+... .....+++.+.. .+..++..++.++.|++..... +.
T Consensus 271 l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~-- 348 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 348 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS--
T ss_pred cCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc--
Confidence 33456778888999999999988744444432 234555554421 1456888888888998764211 10
Q ss_pred hhcCChHHHHHhhc---------cCCHHHHHHHHHHHHHhhcCc
Q 009036 348 GVLGALPPLLHLLK---------SDSERTQHDSALALYHLSLVK 382 (546)
Q Consensus 348 ~~~g~l~~Lv~lL~---------~~~~~~~~~A~~aL~~Ls~~~ 382 (546)
....+..++.++. ..+.++.--++.||.+|....
T Consensus 349 -~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 349 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp -CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred -hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1223345555554 247778788888888887533
No 247
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=31.61 E-value=32 Score=26.23 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=29.9
Q ss_pred CCceeCcccccccCCCeecCC----CccccHHHHHHHHhc
Q 009036 43 PGEFLCPVSGSLMADPVVVSS----GHTFERACAHVCKTL 78 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~~~----G~ty~r~~i~~~~~~ 78 (546)
-..++|-+|.+-+.|--.+.| +|.||-.|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 366889999999999888755 799999998777754
No 248
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.33 E-value=38 Score=24.57 Aligned_cols=35 Identities=29% Similarity=0.524 Sum_probs=26.9
Q ss_pred CCceeCcccccccCCC-eecCCCccccHHHHHHHHh
Q 009036 43 PGEFLCPVSGSLMADP-VVVSSGHTFERACAHVCKT 77 (546)
Q Consensus 43 p~~~~CpI~~~~m~dP-V~~~~G~ty~r~~i~~~~~ 77 (546)
|+-|.|-.|...+.+- ....-|.-||+.|..+-+.
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 5678999998888774 3446789999999877654
No 249
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=29.75 E-value=2.6e+02 Score=28.97 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=63.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHH---HHHHHHHHHHHhhcCCchHHH
Q 009036 229 EDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTN---VQVNAVAALVNLSLEKINKML 305 (546)
Q Consensus 229 i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~---v~~~A~~~L~nLs~~~~nk~~ 305 (546)
+++++..|.++.......|++.|. ...-+..++..+++..|+.++...+.. +....-.++..|+.++-.+.+
T Consensus 118 ve~i~~aL~S~~~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrr 192 (500)
T 3vld_A 118 AEDLVKALRSEIDPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRR 192 (500)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHH
Confidence 578999999988888888888876 345677888899999999999865432 554445556667766656666
Q ss_pred HHhcCChHHHHHHHccCCHHH
Q 009036 306 IVRSGLVPPIVDVLMAGSAEA 326 (546)
Q Consensus 306 i~~~g~l~~Lv~lL~~~~~~~ 326 (546)
|.+. .++.|..+=++.++-+
T Consensus 193 il~n-nl~lL~~vK~~~~~i~ 212 (500)
T 3vld_A 193 LFDN-NLPYLVSVKGRMETVS 212 (500)
T ss_dssp HHTT-THHHHHHHHHHCCHHH
T ss_pred HHHH-hHHHHHHHhcCCCcee
Confidence 6643 4555555444444433
No 250
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=29.02 E-value=52 Score=26.27 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=35.5
Q ss_pred CCCceeCcccccccCCCeecCC--C----ccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 42 PPGEFLCPVSGSLMADPVVVSS--G----HTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 42 ~p~~~~CpI~~~~m~dPV~~~~--G----~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
+++.+.|||++++=..=|.+.- | --||..++.+-...|.. =|.+|.++..
T Consensus 24 ~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~-HPLSREpit~ 79 (102)
T 2kkx_A 24 PLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLP-HPLTREPITA 79 (102)
T ss_dssp CTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCC-CTTTCCCCCT
T ss_pred CHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCC-CCCccCCCCH
Confidence 3477899999999888888722 2 35999999998765542 3345666654
No 251
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=28.55 E-value=1.3e+02 Score=26.07 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=49.8
Q ss_pred cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHH-HHHHHhc---CCHHHHHHHHHHHHHhhc
Q 009036 432 GVECLVGMLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEV-LMRMERV---GSEHVKEKAKRMLELMKG 505 (546)
Q Consensus 432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~-L~~ll~~---~s~~~k~~A~~lL~~L~~ 505 (546)
++..|.+.|... .++.++..|+.+|-.+..+ +..+...+.....+.- |+.++.. ....+|+++.+++..-..
T Consensus 54 a~ral~krl~~~--~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGN--KNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 556777777642 4578889999988877764 4566666655556665 6777642 245899999999887654
No 252
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=28.48 E-value=1e+02 Score=26.21 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=32.4
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhc
Q 009036 227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCT 267 (546)
Q Consensus 227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~ 267 (546)
...+.|.++|+..++.+..+|+..|..|.++.. ..+..+..
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 567888999998999999999999999987644 44555554
No 253
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.32 E-value=41 Score=25.90 Aligned_cols=25 Identities=16% Similarity=0.505 Sum_probs=12.4
Q ss_pred eCcccccccCCCeecCCCccccHHH
Q 009036 47 LCPVSGSLMADPVVVSSGHTFERAC 71 (546)
Q Consensus 47 ~CpI~~~~m~dPV~~~~G~ty~r~~ 71 (546)
.|+-|.+...+.++..-|+.|-..|
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~~C 51 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHPEE 51 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECTTT
T ss_pred CCccCCCEecceEEEECCccccccC
Confidence 3555555545555444455554444
No 254
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=28.04 E-value=43 Score=27.55 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=37.0
Q ss_pred CCceeCcccccccCC-CeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMAD-PVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 43 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
|+-|.|..|...+.+ +....-|.-||+.|..+- ....|..|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN---HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH---SCCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcC---cCccCcccCCcCCc
Confidence 577999999998876 666788999999997653 34468888887664
No 255
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.45 E-value=62 Score=23.43 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=29.0
Q ss_pred CCceeCcccccccCC-CeecCCCccccHHHHHHHHhc
Q 009036 43 PGEFLCPVSGSLMAD-PVVVSSGHTFERACAHVCKTL 78 (546)
Q Consensus 43 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~~~~~ 78 (546)
++-|.|..|...+.+ +....-|.-||+.|..+.+..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 467999999998865 356678999999999887763
No 256
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.96 E-value=39 Score=28.02 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=17.6
Q ss_pred ceeCcccccccCCC-eecCCCccccHHHH
Q 009036 45 EFLCPVSGSLMADP-VVVSSGHTFERACA 72 (546)
Q Consensus 45 ~~~CpI~~~~m~dP-V~~~~G~ty~r~~i 72 (546)
.-.|+-|.+...+. ++..-|..|-+.|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF 89 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCL 89 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTS
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEccccc
Confidence 34677777766666 35566666666654
No 257
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.53 E-value=23 Score=26.26 Aligned_cols=34 Identities=21% Similarity=0.527 Sum_probs=27.7
Q ss_pred CCceeCcccccccC--CCeecCCCccccHHHHHHHH
Q 009036 43 PGEFLCPVSGSLMA--DPVVVSSGHTFERACAHVCK 76 (546)
Q Consensus 43 p~~~~CpI~~~~m~--dPV~~~~G~ty~r~~i~~~~ 76 (546)
|+-|.|..|...+. +.....-|.-||..|..+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAAR 64 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTS
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhh
Confidence 57799999999887 56677888999999987644
No 258
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.47 E-value=47 Score=23.99 Aligned_cols=34 Identities=9% Similarity=0.187 Sum_probs=26.8
Q ss_pred CCceeCcccccccCC-CeecCCCccccHHHHHHHH
Q 009036 43 PGEFLCPVSGSLMAD-PVVVSSGHTFERACAHVCK 76 (546)
Q Consensus 43 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~~~ 76 (546)
|+-|.|..|...+.+ +....-|.-||+.|..+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 29 KECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 567999999988865 5556789999999986654
No 259
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=26.21 E-value=1.5e+02 Score=27.88 Aligned_cols=64 Identities=8% Similarity=0.062 Sum_probs=43.5
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 009036 310 GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYH 377 (546)
Q Consensus 310 g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~ 377 (546)
.+++.++.+-.+.+.++|...+.+|...+..... .....++.|..+|.++++.+.+.++.+..+
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~----l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE----LLPHVINVVSMLLRDNSAQVIKRVIQACGS 116 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3566666655566888898888888777632211 223467788888888888888887765443
No 260
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=25.98 E-value=21 Score=32.43 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.5
Q ss_pred CceeCcccccccCCCeecCCCccccHHHHH
Q 009036 44 GEFLCPVSGSLMADPVVVSSGHTFERACAH 73 (546)
Q Consensus 44 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~ 73 (546)
....|++|+|.+-++ |..+|+.|-.
T Consensus 162 ~~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp CEEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred CCEECCcCCCChhhC-----CCcCCccccC
Confidence 567899999987777 9999999963
No 261
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=25.79 E-value=3.8e+02 Score=26.81 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=70.2
Q ss_pred chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhh--------
Q 009036 226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLS-------- 297 (546)
Q Consensus 226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs-------- 297 (546)
++-++.++..-...+.++|...+..|.+.++...+.- .-+++.|..+|.+.++.+...++.+..++-
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667888888778889999999999988876543331 346788888898889988888776655432
Q ss_pred cCCchH---HHH--HhcCChHHHHHHHccCCHHHHHHHHHHHhhc
Q 009036 298 LEKINK---MLI--VRSGLVPPIVDVLMAGSAEAQEHACGAIFSL 337 (546)
Q Consensus 298 ~~~~nk---~~i--~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~L 337 (546)
.++... ... .-...-..++.++.+++.-+|..+..++..+
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 121110 010 0011234455566777888888888777654
No 262
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=25.46 E-value=66 Score=28.45 Aligned_cols=47 Identities=6% Similarity=-0.159 Sum_probs=28.7
Q ss_pred CCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
|+-|.|..|...+.+--...-|.-||+.|..+- ....|..|++++..
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~---f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKR---FGTKCAACQLGIPP 131 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHT---TSCCCTTTCCCCCS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCccccc---cccccccCCCccCC
Confidence 355777777777665434566777887775442 23456666665543
No 263
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=25.23 E-value=37 Score=24.26 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=24.5
Q ss_pred CCceeCcccccccCC-CeecCCCccccHHHHHHH
Q 009036 43 PGEFLCPVSGSLMAD-PVVVSSGHTFERACAHVC 75 (546)
Q Consensus 43 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~~ 75 (546)
++-|.|..|...+.+ +....-|.-||+.|..+-
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 29 VEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQL 62 (66)
T ss_dssp TTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred cCcCEECCCCCCCCCCceEeECCcEECHHHHHHH
Confidence 467889888887765 455677888998887553
No 264
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.68 E-value=59 Score=24.27 Aligned_cols=35 Identities=14% Similarity=0.346 Sum_probs=27.6
Q ss_pred CCceeCcccccccC--CCeec-CCCccccHHHHHHHHh
Q 009036 43 PGEFLCPVSGSLMA--DPVVV-SSGHTFERACAHVCKT 77 (546)
Q Consensus 43 p~~~~CpI~~~~m~--dPV~~-~~G~ty~r~~i~~~~~ 77 (546)
++-|.|..|...+. ++..+ .-|.-||+.|..+.+.
T Consensus 39 ~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 39 PECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp TTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred cccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 57799999999985 56664 7889999999877554
No 265
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=23.91 E-value=1.6e+02 Score=26.55 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=59.6
Q ss_pred ChHHHHHHHcc------CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhcc---CCHHHHHHHHHHHHHhhcC
Q 009036 311 LVPPIVDVLMA------GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKS---DSERTQHDSALALYHLSLV 381 (546)
Q Consensus 311 ~l~~Lv~lL~~------~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~---~~~~~~~~A~~aL~~Ls~~ 381 (546)
.+|-++..+.+ .+.......+.....|..++...-...-...+|.++..+-. +...+|..|+..|..+|..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 45666655432 25566666666666666555321111122356666666533 2338999999999999873
Q ss_pred chhHHHHHhcCcHHHHHHHHhCch----HHHHHHHHHHHhh
Q 009036 382 KSNRTKLVKLGSVNALLGMVNSGH----MTGRVLLILGNLA 418 (546)
Q Consensus 382 ~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa 418 (546)
-.+...-+..-++..+.+.+.++. ...-|+..|..|-
T Consensus 121 ~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 121 YSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred hCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 222112223334556777776643 4444666665543
No 266
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.76 E-value=47 Score=27.31 Aligned_cols=51 Identities=12% Similarity=-0.038 Sum_probs=37.7
Q ss_pred CCceeCcccccccCC---CeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMAD---PVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFST 94 (546)
Q Consensus 43 p~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~ 94 (546)
|+-|.|..|...+.| .....-|.-||+.|..+-+.. ..-|..|.+++....
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEE
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchh
Confidence 466999999999974 566788999999998776542 114777877776533
No 267
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=23.43 E-value=1.3e+02 Score=26.00 Aligned_cols=74 Identities=8% Similarity=0.067 Sum_probs=55.7
Q ss_pred chhHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHH-HHHHHHcc---CCHHHHHHHHHHHHHhhcC
Q 009036 226 NEQEDYFVQKLKS-PQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLL-ALRSLIIS---RYTNVQVNAVAALVNLSLE 299 (546)
Q Consensus 226 ~~~i~~lv~~L~s-~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~-~Lv~lL~s---~~~~v~~~A~~~L~nLs~~ 299 (546)
..++..|.++|.+ .++.++..|+..|-.+.+.+. .....+.+..++. .|+.++.. .+..+++.++..|...+..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4678889999975 588889999999999888754 3456666666775 46777653 3467999999999887764
No 268
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.38 E-value=62 Score=23.23 Aligned_cols=35 Identities=11% Similarity=0.231 Sum_probs=27.5
Q ss_pred CCceeCcccccccCC-CeecCCCccccHHHHHHHHh
Q 009036 43 PGEFLCPVSGSLMAD-PVVVSSGHTFERACAHVCKT 77 (546)
Q Consensus 43 p~~~~CpI~~~~m~d-PV~~~~G~ty~r~~i~~~~~ 77 (546)
++-|.|..|...+.+ .....-|.-||+.|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 29 ADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred cCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 467999999988865 45567899999999877654
No 269
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=23.37 E-value=27 Score=31.25 Aligned_cols=48 Identities=13% Similarity=0.020 Sum_probs=37.3
Q ss_pred CCceeCcccccccCC---CeecCCCccccHHHHHHHHhcCCC-CCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMAD---PVVVSSGHTFERACAHVCKTLGFT-PTLVDGTTPDF 92 (546)
Q Consensus 43 p~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~-~cp~~~~~~~~ 92 (546)
|+-|.|..|...+.+ +....-|.-||+.|..+-+. .. .|..|.+++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~--~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG--NSGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS--CCEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccc--cCCccccCCCcccc
Confidence 577999999999885 78889999999999866543 21 48888776654
No 270
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=22.91 E-value=1.2e+02 Score=30.24 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=61.0
Q ss_pred ccCCHHHHHHHHHHHHHhhcCCchHHHHHhc-CChHHHHHHH----cc----CCHHHHHHHHHHHhhcccccch-hhHHh
Q 009036 279 ISRYTNVQVNAVAALVNLSLEKINKMLIVRS-GLVPPIVDVL----MA----GSAEAQEHACGAIFSLALDDQN-KTAIG 348 (546)
Q Consensus 279 ~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~-g~l~~Lv~lL----~~----~~~~~~~~Aa~~L~~Ls~~~~~-k~~i~ 348 (546)
.+..+..+-.+++++.|+..++.....++.. .....+++.+ .. .+..++..++.++.|++..... +.
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~--- 285 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 285 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---
Confidence 3456778888999999999988744444322 1223334433 11 1456888888888998764211 10
Q ss_pred hcCChHHHHHhhc---------cCCHHHHHHHHHHHHHhhcC
Q 009036 349 VLGALPPLLHLLK---------SDSERTQHDSALALYHLSLV 381 (546)
Q Consensus 349 ~~g~l~~Lv~lL~---------~~~~~~~~~A~~aL~~Ls~~ 381 (546)
....+..+++++. ..+.++.--++.||.+|...
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 1223345555555 24778878888888888753
No 271
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.57 E-value=65 Score=26.58 Aligned_cols=49 Identities=8% Similarity=-0.059 Sum_probs=36.9
Q ss_pred CCceeCcccccccCC---CeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMAD---PVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 43 p~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
|+-|.|..|...+.+ +....-|.-||+.|..+-+.. ...|..|.+++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 578999999999963 677899999999998765431 1158788776653
No 272
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=22.51 E-value=25 Score=27.26 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=19.5
Q ss_pred Cce-eCcccccccC-C----CeecC-CCccccHHHHHHH
Q 009036 44 GEF-LCPVSGSLMA-D----PVVVS-SGHTFERACAHVC 75 (546)
Q Consensus 44 ~~~-~CpI~~~~m~-d----PV~~~-~G~ty~r~~i~~~ 75 (546)
..| -||=|..+|. + +|+=+ ||+.||..|-..|
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 344 4998887653 2 24433 7788877775544
No 273
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.42 E-value=84 Score=24.47 Aligned_cols=47 Identities=11% Similarity=-0.025 Sum_probs=34.7
Q ss_pred CCceeCcccccccCCC-eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036 43 PGEFLCPVSGSLMADP-VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF 92 (546)
Q Consensus 43 p~~~~CpI~~~~m~dP-V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 92 (546)
++-|.|..|...+.+. ....-|..||+.|..+ .....|..|.+++.+
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~---~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTR---EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTT---CCCCBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhh---hcCCccccCCCcccc
Confidence 4679999999988764 5567899999998643 234467788777653
No 274
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=20.19 E-value=42 Score=30.66 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=24.4
Q ss_pred CCceeCcccccccCCCe-ecCCCccccHHHHH
Q 009036 43 PGEFLCPVSGSLMADPV-VVSSGHTFERACAH 73 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV-~~~~G~ty~r~~i~ 73 (546)
-....|++|+|.+-++= .+.-|..+|+.|-.
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~ 201 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLNGKPVCKPDYY 201 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEETTEEECHHHHH
T ss_pred CCceECCCCCCchhhcceeeeCCcEEChhhhc
Confidence 35678999999887773 34669999999974
No 275
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.05 E-value=51 Score=25.27 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=19.5
Q ss_pred CCceeCcccccccCCCeecCCCccccHHHH
Q 009036 43 PGEFLCPVSGSLMADPVVVSSGHTFERACA 72 (546)
Q Consensus 43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i 72 (546)
+..-.|.-|.+...+.++..-|..|-..|.
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF 52 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPECF 52 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTTC
T ss_pred CcCCCcccCCCEecccEEEECCceECccCC
Confidence 344567777777777666666776666654
Done!