Query 009038
Match_columns 546
No_of_seqs 116 out of 134
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 19:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04859 DUF641: Plant protein 100.0 8.9E-43 1.9E-47 317.4 14.2 127 148-274 3-130 (131)
2 PF01025 GrpE: GrpE; InterPro 86.4 1.1 2.4E-05 41.8 4.8 56 486-543 109-164 (165)
3 PRK14150 heat shock protein Gr 72.5 4.4 9.6E-05 40.1 4.0 54 487-543 138-192 (193)
4 COG2433 Uncharacterized conser 68.6 56 0.0012 38.0 11.8 92 147-268 419-511 (652)
5 PRK10869 recombination and rep 68.0 53 0.0011 37.2 11.6 115 162-324 263-387 (553)
6 PF08614 ATG16: Autophagy prot 67.6 7.6 0.00017 37.8 4.4 106 160-268 27-146 (194)
7 COG0576 GrpE Molecular chapero 67.0 6.4 0.00014 38.9 3.8 54 486-542 135-189 (193)
8 PF12709 Kinetocho_Slk19: Cent 66.6 18 0.00039 32.1 6.0 33 234-266 45-77 (87)
9 COG0497 RecN ATPase involved i 66.3 33 0.00072 39.3 9.6 44 164-211 266-318 (557)
10 PRK11448 hsdR type I restricti 65.5 35 0.00077 42.0 10.3 107 152-264 102-210 (1123)
11 PRK14140 heat shock protein Gr 64.1 8.3 0.00018 38.3 3.9 53 487-542 136-189 (191)
12 PRK14151 heat shock protein Gr 62.3 10 0.00023 37.0 4.2 55 486-543 119-174 (176)
13 TIGR00634 recN DNA repair prot 61.5 1.9E+02 0.0042 32.6 14.5 25 300-324 367-392 (563)
14 cd00446 GrpE GrpE is the adeni 61.5 9.1 0.0002 35.3 3.5 52 486-540 83-135 (137)
15 PRK14158 heat shock protein Gr 59.9 12 0.00027 37.2 4.3 55 487-543 138-193 (194)
16 PRK14148 heat shock protein Gr 59.8 11 0.00023 37.7 3.9 54 487-543 139-193 (195)
17 PRK14162 heat shock protein Gr 58.9 13 0.00028 37.1 4.2 55 487-543 138-193 (194)
18 PRK14154 heat shock protein Gr 58.7 16 0.00035 36.9 4.9 56 486-543 151-207 (208)
19 PRK11546 zraP zinc resistance 58.7 51 0.0011 31.6 7.9 73 177-262 38-113 (143)
20 COG5185 HEC1 Protein involved 57.4 1.9E+02 0.0041 33.1 13.1 98 155-267 262-359 (622)
21 PF08317 Spc7: Spc7 kinetochor 57.2 1.2E+02 0.0026 32.0 11.2 109 151-267 143-259 (325)
22 PF05984 Cytomega_UL20A: Cytom 55.9 5.4 0.00012 35.3 0.9 16 469-484 1-16 (100)
23 PRK14160 heat shock protein Gr 55.3 16 0.00035 36.9 4.3 53 487-543 157-210 (211)
24 TIGR02231 conserved hypothetic 55.3 1.2E+02 0.0026 33.8 11.4 42 226-267 126-167 (525)
25 PRK14141 heat shock protein Gr 54.8 14 0.0003 37.3 3.7 55 487-544 136-191 (209)
26 PRK14144 heat shock protein Gr 53.5 18 0.00039 36.3 4.2 54 487-543 143-197 (199)
27 PF14584 DUF4446: Protein of u 53.0 62 0.0013 31.1 7.6 65 194-266 17-81 (151)
28 PF08317 Spc7: Spc7 kinetochor 52.8 1.6E+02 0.0035 31.1 11.4 6 38-43 25-30 (325)
29 PRK14147 heat shock protein Gr 52.3 17 0.00037 35.5 3.8 55 486-543 114-169 (172)
30 smart00787 Spc7 Spc7 kinetocho 52.2 2.4E+02 0.0052 30.1 12.5 24 153-176 140-163 (312)
31 PRK14153 heat shock protein Gr 51.6 23 0.0005 35.3 4.7 56 486-544 131-187 (194)
32 PRK14145 heat shock protein Gr 51.5 18 0.00039 36.2 3.9 53 487-542 141-194 (196)
33 COG4913 Uncharacterized protei 51.2 1E+02 0.0023 36.8 10.2 111 150-271 623-738 (1104)
34 PRK14161 heat shock protein Gr 50.8 24 0.00052 34.7 4.6 56 487-544 120-176 (178)
35 PRK10325 heat shock protein Gr 50.7 16 0.00036 36.2 3.5 55 486-543 138-193 (197)
36 PF03962 Mnd1: Mnd1 family; I 48.5 83 0.0018 31.0 7.9 34 234-267 65-98 (188)
37 PF04859 DUF641: Plant protein 48.1 1.4E+02 0.003 28.4 8.9 90 150-260 41-130 (131)
38 PRK14155 heat shock protein Gr 47.9 30 0.00064 34.9 4.8 57 486-544 114-171 (208)
39 PF11559 ADIP: Afadin- and alp 47.8 2.1E+02 0.0045 26.6 10.1 91 158-262 60-150 (151)
40 PF10112 Halogen_Hydrol: 5-bro 47.0 1.1E+02 0.0025 29.6 8.6 52 150-216 101-152 (199)
41 PF05529 Bap31: B-cell recepto 46.2 53 0.0012 31.7 6.2 36 231-266 154-189 (192)
42 PRK09039 hypothetical protein; 43.8 1.6E+02 0.0034 31.6 9.7 13 200-212 123-135 (343)
43 PRK14139 heat shock protein Gr 43.7 34 0.00073 34.0 4.4 55 486-544 128-183 (185)
44 PF03980 Nnf1: Nnf1 ; InterPr 43.0 1.5E+02 0.0033 26.2 8.1 45 221-265 63-107 (109)
45 PF09403 FadA: Adhesion protei 43.0 62 0.0014 30.3 5.8 34 226-259 88-121 (126)
46 PRK14146 heat shock protein Gr 42.4 27 0.00058 35.3 3.6 49 494-543 159-211 (215)
47 PF12329 TMF_DNA_bd: TATA elem 41.7 1.2E+02 0.0026 25.7 6.9 34 228-261 37-70 (74)
48 PF12325 TMF_TATA_bd: TATA ele 41.6 36 0.00079 31.5 4.0 30 238-267 16-45 (120)
49 PF10211 Ax_dynein_light: Axon 40.6 1.7E+02 0.0037 28.8 8.7 36 156-191 83-118 (189)
50 PF05983 Med7: MED7 protein; 39.6 52 0.0011 31.8 4.9 87 149-266 71-159 (162)
51 PF07106 TBPIP: Tat binding pr 37.8 98 0.0021 29.4 6.4 26 241-266 112-137 (169)
52 PRK14143 heat shock protein Gr 37.6 37 0.00079 34.9 3.7 55 486-543 166-221 (238)
53 PF14555 UBA_4: UBA-like domai 37.6 30 0.00066 25.9 2.4 20 315-334 17-36 (43)
54 PF15290 Syntaphilin: Golgi-lo 37.3 51 0.0011 35.0 4.7 69 233-323 70-139 (305)
55 PF02050 FliJ: Flagellar FliJ 37.3 2.3E+02 0.005 23.8 8.1 73 195-268 17-89 (123)
56 PF09726 Macoilin: Transmembra 36.8 2.7E+02 0.0058 33.0 10.9 93 228-320 542-642 (697)
57 PRK14163 heat shock protein Gr 35.8 31 0.00068 35.0 2.9 54 487-543 132-186 (214)
58 COG1382 GimC Prefoldin, chaper 34.9 1.1E+02 0.0023 28.8 5.9 73 195-268 42-114 (119)
59 cd00632 Prefoldin_beta Prefold 34.8 92 0.002 27.4 5.4 38 228-265 67-104 (105)
60 COG4026 Uncharacterized protei 34.6 1.1E+02 0.0024 31.8 6.5 95 157-272 73-183 (290)
61 PRK14142 heat shock protein Gr 34.6 47 0.001 34.0 3.9 49 494-543 132-181 (223)
62 PRK14159 heat shock protein Gr 34.5 57 0.0012 32.1 4.3 45 495-542 129-174 (176)
63 PF04102 SlyX: SlyX; InterPro 33.6 1.2E+02 0.0027 25.1 5.6 46 226-271 6-51 (69)
64 PF00170 bZIP_1: bZIP transcri 33.3 1E+02 0.0022 24.8 5.0 37 230-266 25-61 (64)
65 TIGR01010 BexC_CtrB_KpsE polys 32.9 6.1E+02 0.013 26.7 13.2 58 153-210 173-231 (362)
66 PF10205 KLRAQ: Predicted coil 31.3 40 0.00087 30.7 2.5 38 233-270 21-58 (102)
67 KOG2189 Vacuolar H+-ATPase V0 30.8 1.2E+02 0.0027 36.2 6.9 80 188-267 44-128 (829)
68 PRK14157 heat shock protein Gr 30.8 58 0.0013 33.4 3.8 48 494-543 175-223 (227)
69 PRK11637 AmiB activator; Provi 30.6 7.3E+02 0.016 27.0 12.4 11 493-503 366-376 (428)
70 smart00787 Spc7 Spc7 kinetocho 30.0 7.1E+02 0.015 26.6 12.1 27 186-212 154-180 (312)
71 PRK14149 heat shock protein Gr 29.8 82 0.0018 31.5 4.6 53 487-543 135-188 (191)
72 KOG0804 Cytoplasmic Zn-finger 29.8 1.6E+02 0.0035 33.3 7.2 116 149-267 331-450 (493)
73 KOG2391 Vacuolar sorting prote 29.6 2.3E+02 0.0051 31.0 8.2 41 226-266 241-281 (365)
74 COG5124 Protein predicted to b 29.5 4.6E+02 0.01 26.5 9.6 182 148-381 8-199 (209)
75 KOG2264 Exostosin EXT1L [Signa 29.2 82 0.0018 36.6 5.0 39 226-264 102-140 (907)
76 PRK13729 conjugal transfer pil 27.9 2.4E+02 0.0051 32.1 8.2 30 236-265 95-124 (475)
77 KOG4552 Vitamin-D-receptor int 27.6 95 0.0021 31.9 4.7 31 236-266 72-102 (272)
78 smart00338 BRLZ basic region l 27.4 1.1E+02 0.0024 24.6 4.3 32 233-264 28-59 (65)
79 TIGR02338 gimC_beta prefoldin, 26.9 1.7E+02 0.0037 26.0 5.8 70 194-264 38-107 (110)
80 PF09726 Macoilin: Transmembra 26.9 2E+02 0.0043 34.0 7.8 45 224-268 612-659 (697)
81 TIGR02338 gimC_beta prefoldin, 26.9 1.5E+02 0.0032 26.5 5.4 38 229-266 65-102 (110)
82 COG2433 Uncharacterized conser 26.5 98 0.0021 36.1 5.0 39 228-266 419-457 (652)
83 PHA02562 46 endonuclease subun 25.9 5.5E+02 0.012 28.4 10.6 97 149-267 298-394 (562)
84 PF08826 DMPK_coil: DMPK coile 25.8 2E+02 0.0042 24.0 5.4 32 235-266 29-60 (61)
85 PRK00736 hypothetical protein; 25.2 1.9E+02 0.0041 24.2 5.3 42 226-267 7-48 (68)
86 PF06818 Fez1: Fez1; InterPro 25.1 92 0.002 31.5 4.0 40 233-272 12-51 (202)
87 PF10046 BLOC1_2: Biogenesis o 24.9 2.1E+02 0.0045 25.3 5.9 37 227-263 62-98 (99)
88 PRK03598 putative efflux pump 24.8 7E+02 0.015 25.8 10.6 44 169-212 90-133 (331)
89 PF08537 NBP1: Fungal Nap bind 24.4 3.2E+02 0.007 29.6 8.1 36 237-272 181-216 (323)
90 TIGR02473 flagell_FliJ flagell 24.2 1.7E+02 0.0036 26.2 5.3 79 194-272 31-109 (141)
91 PRK10884 SH3 domain-containing 24.0 1.4E+02 0.0031 30.0 5.1 44 228-271 122-165 (206)
92 KOG3759 Uncharacterized RUN do 23.6 4.7E+02 0.01 30.0 9.4 169 150-339 64-251 (621)
93 smart00338 BRLZ basic region l 23.5 2E+02 0.0043 23.1 5.0 36 226-261 28-63 (65)
94 PF04977 DivIC: Septum formati 23.1 2E+02 0.0042 23.3 5.0 33 234-266 20-52 (80)
95 PRK04325 hypothetical protein; 22.8 2.2E+02 0.0047 24.2 5.3 41 226-266 11-51 (74)
96 PF12761 End3: Actin cytoskele 22.6 7.6E+02 0.016 25.1 9.8 93 150-259 103-195 (195)
97 PRK00295 hypothetical protein; 22.6 2.3E+02 0.0049 23.7 5.3 41 226-266 7-47 (68)
98 PRK04406 hypothetical protein; 22.4 2.2E+02 0.0048 24.3 5.3 41 226-266 13-53 (75)
99 PF05700 BCAS2: Breast carcino 22.4 3.2E+02 0.0069 27.4 7.3 15 167-181 104-118 (221)
100 TIGR02680 conserved hypothetic 22.3 4E+02 0.0086 33.8 9.6 34 162-195 816-853 (1353)
101 TIGR02231 conserved hypothetic 22.1 7.9E+02 0.017 27.5 11.0 39 229-267 136-174 (525)
102 PF05377 FlaC_arch: Flagella a 22.0 1.4E+02 0.003 24.5 3.8 25 241-265 3-27 (55)
103 KOG0995 Centromere-associated 22.0 1.5E+02 0.0031 34.4 5.3 39 228-266 284-322 (581)
104 cd01106 HTH_TipAL-Mta Helix-Tu 21.9 2.6E+02 0.0057 24.3 5.9 66 187-266 35-101 (103)
105 PRK14164 heat shock protein Gr 21.9 89 0.0019 31.8 3.3 46 494-543 169-215 (218)
106 PF05615 THOC7: Tho complex su 21.8 6.3E+02 0.014 23.2 9.4 42 227-268 70-111 (139)
107 cd00890 Prefoldin Prefoldin is 21.6 2.1E+02 0.0046 25.2 5.3 36 229-264 92-127 (129)
108 PF07851 TMPIT: TMPIT-like pro 21.6 5.4E+02 0.012 28.0 9.2 75 164-263 4-79 (330)
109 PRK14156 heat shock protein Gr 21.3 1.2E+02 0.0027 29.9 4.0 45 497-542 130-175 (177)
110 PF04508 Pox_A_type_inc: Viral 21.2 1.2E+02 0.0027 20.9 2.8 21 246-266 2-22 (23)
111 TIGR02209 ftsL_broad cell divi 21.1 2.3E+02 0.005 23.5 5.2 38 229-266 22-59 (85)
112 PRK15178 Vi polysaccharide exp 21.0 8.6E+02 0.019 27.4 10.8 41 160-200 252-292 (434)
113 PF08172 CASP_C: CASP C termin 20.7 99 0.0021 31.9 3.4 43 227-272 85-127 (248)
114 PF01920 Prefoldin_2: Prefoldi 20.4 1.6E+02 0.0034 25.1 4.1 32 230-261 68-99 (106)
115 PF12329 TMF_DNA_bd: TATA elem 20.4 2.4E+02 0.0051 24.0 5.0 35 233-267 28-62 (74)
No 1
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=100.00 E-value=8.9e-43 Score=317.40 Aligned_cols=127 Identities=32% Similarity=0.552 Sum_probs=121.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCc-cCCCCch
Q 009038 148 SIERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRR-CGGVSGG 226 (546)
Q Consensus 148 ~~~~~~~~ealia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~-~~~~a~~ 226 (546)
..+++..|+++|++|||+|||||+||+|||+||+|||||+|++||++||+||++||+||++|++++.+++|. +.+.+++
T Consensus 3 ~~~~~~~~eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~ 82 (131)
T PF04859_consen 3 EAQRAAAMEALIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEI 82 (131)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccch
Confidence 358899999999999999999999999999999999999999999999999999999999999999999864 4788999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCCCC
Q 009038 227 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGGKK 274 (546)
Q Consensus 227 ~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~leKr 274 (546)
+|+|++|+|||+++++||+|+++||+||..||++|+++...|.+++||
T Consensus 83 ~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 83 QEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999875
No 2
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=86.42 E-value=1.1 Score=41.84 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=34.9
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEEEEEEee
Q 009038 486 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIKARVYLG 543 (546)
Q Consensus 486 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVikcrVyLs 543 (546)
.++.+.+. |..|||.+||-|.....+. .....|.=.+.|||++|++.+-.++|-++
T Consensus 109 Gv~~i~~~-G~~FDp~~heav~~~~~~~-~~~~~I~~v~~~GY~~~~rvlRpA~V~V~ 164 (165)
T PF01025_consen 109 GVEEIEPV-GEPFDPNLHEAVETVPDPD-KEPGTIVEVVRPGYRLGGRVLRPAEVVVS 164 (165)
T ss_dssp TEEEE--T-SSB--TTTEEEEEEECSSS-S-CTBEEEECC-EEEETTEEEE-EEEEEE
T ss_pred CCEecCCC-CCCCCHHHheeheecCcCC-CCcCeEEEEEecCEEECCEEeeeeEEEec
Confidence 56667776 9999999999988643332 23456778899999999844445666543
No 3
>PRK14150 heat shock protein GrpE; Provisional
Probab=72.51 E-value=4.4 Score=40.07 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=37.8
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 487 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 487 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
+..+.+ .|..|||.++|-|........+ ...|--.+-|||++|+ .||+ ++|.++
T Consensus 138 v~~i~~-~G~~FDP~~HeAv~~~~~~~~~-~gtI~~v~q~GY~l~d-rvLRpA~V~Vs 192 (193)
T PRK14150 138 VEVVGP-VGEPFNPEVHQAISMQESEDHE-PNTVMMVMQKGYTLNG-RLLRPAMVMVS 192 (193)
T ss_pred CeeeCC-CCCCCCHhHcceeeeeCCCCCC-cCEEEEEeeCCeEeCC-EEecceEEEeC
Confidence 455554 5999999999999763333223 3456678899999999 5554 666654
No 4
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.56 E-value=56 Score=37.96 Aligned_cols=92 Identities=18% Similarity=0.330 Sum_probs=70.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHH-hhhHhHHHHhhccCCCCCccCCCCc
Q 009038 147 VSIERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELR-KIGVLRERLKRRSFGGGRRCGGVSG 225 (546)
Q Consensus 147 ~~~~~~~~~ealia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~-~LseLK~~y~~~~~~~~~~~~~~a~ 225 (546)
+..++....+.-+.+|=.-++.|++---+|| .-+.+|+ +|.++++....+..
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k----------------~eie~L~~~l~~~~r~~~~~~~----------- 471 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELK----------------REIEKLESELERFRREVRDKVR----------- 471 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 3446677788899999999999998777776 3556665 67778877774322
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 268 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n 268 (546)
..-.++..+-.+.+|+.+|..+...|+.|+.+|.++...+
T Consensus 472 ---~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 472 ---KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223556677788999999999999999999999988654
No 5
>PRK10869 recombination and repair protein; Provisional
Probab=67.96 E-value=53 Score=37.25 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=64.9
Q ss_pred HHHHHhHHHHHHHHHHhh---------cCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhh
Q 009038 162 VFDAVSAMKRAYVSLQEA---------HCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREV 232 (546)
Q Consensus 162 lFa~VSslKaAY~qLQ~A---------h~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~ 232 (546)
+-+.+..+..+|.+||.+ ..-|||+.+.. |-+-|..|..||+.|... +..+
T Consensus 263 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~----ie~Rl~~l~~L~rKyg~~----------------~~~~ 322 (553)
T PRK10869 263 LSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAE----LEQRLSKQISLARKHHVS----------------PEEL 322 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH----HHHHHHHHHHHHHHhCCC----------------HHHH
Confidence 344556677777777754 34677776544 556677777788888722 3333
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCCCCCCCcccccccCCCCCCCCCChHHHHHHHHHHH-HHHHH
Q 009038 233 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGGKKGRSLSKRKVNCSSQVAAAPSPDLFEVTMCQVK-ESSKS 311 (546)
Q Consensus 233 i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~leKr~~~~~~~~~~~~~~l~~~~sp~lF~~~l~~A~-~Sir~ 311 (546)
++-++.+-++|+ ++...+..+..|+++++++...-.. --..++.+| ++...
T Consensus 323 ~~~~~~l~~eL~-~L~~~e~~l~~Le~e~~~l~~~l~~---------------------------~A~~LS~~R~~aA~~ 374 (553)
T PRK10869 323 PQHHQQLLEEQQ-QLDDQEDDLETLALAVEKHHQQALE---------------------------TAQKLHQSRQRYAKE 374 (553)
T ss_pred HHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHH
Confidence 444444444443 2344555566666666555442100 112333344 45778
Q ss_pred HHHHHHHHHHhcC
Q 009038 312 FTLQLLSLMRAAH 324 (546)
Q Consensus 312 FaK~Li~~Mr~ag 324 (546)
|.+.+..+|+.-|
T Consensus 375 l~~~v~~~L~~L~ 387 (553)
T PRK10869 375 LAQLITESMHELS 387 (553)
T ss_pred HHHHHHHHHHHcC
Confidence 8888888887664
No 6
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=67.64 E-value=7.6 Score=37.81 Aligned_cols=106 Identities=19% Similarity=0.129 Sum_probs=23.1
Q ss_pred HHHHHHHhHHHHHHHHHHhh-------c-------CCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCc
Q 009038 160 NEVFDAVSAMKRAYVSLQEA-------H-------CPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSG 225 (546)
Q Consensus 160 a~lFa~VSslKaAY~qLQ~A-------h-------~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~ 225 (546)
.+|++.++.++..=.+||.. | .|-.+..|.+-+..++.-- .+|-..|+.+.............
T Consensus 27 ~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~---~ELael~r~~~el~~~L~~~~~~ 103 (194)
T PF08614_consen 27 NRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQ---EELAELYRSKGELAQQLVELNDE 103 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccc
Confidence 67888999999888888862 1 1122223333333333222 34455555544333222223345
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 268 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n 268 (546)
.+.++..+...+..+..|++++..+..+|..|...|.+....+
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777777777777777777777776665544
No 7
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=67.00 E-value=6.4 Score=38.90 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=39.1
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEe
Q 009038 486 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYL 542 (546)
Q Consensus 486 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyL 542 (546)
.+..+.+ .|..|||.++|-|...+... .....|.-.+-.||++|+ .||+ +.|-+
T Consensus 135 Gv~~i~~-~Ge~FDP~~HeAv~~~~~~~-~~~~tVv~v~qkGY~l~d-RVLRpA~V~V 189 (193)
T COG0576 135 GVEEIGP-EGEKFDPNLHEAVQRVESED-VEPNTVVEVLQKGYKLND-RVLRPAMVKV 189 (193)
T ss_pred CCEEeCC-CCCCCCHHHhhheeeecCCC-CCCCeEEEEeecCeeeCC-EeccceEEEE
Confidence 4666777 89999999999988743332 234457778899999998 7776 44433
No 8
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=66.61 E-value=18 Score=32.06 Aligned_cols=33 Identities=42% Similarity=0.449 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 234 APYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 234 ~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
..|+.-+.+|+.++.....|++.|+.+|+-...
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999986554
No 9
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=66.31 E-value=33 Score=39.30 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=32.7
Q ss_pred HHHhHHHHHHHHHHhh---------cCCCCchhhhhhHHHHHHHHHhhhHhHHHHhh
Q 009038 164 DAVSAMKRAYVSLQEA---------HCPWDPERMRVADVAVVGELRKIGVLRERLKR 211 (546)
Q Consensus 164 a~VSslKaAY~qLQ~A---------h~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~ 211 (546)
+.+..+-.||.+|+.| .++|||+.+.. |-+-|..|..|+|.|..
T Consensus 266 ~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~----ve~Rl~~L~~l~RKY~~ 318 (557)
T COG0497 266 ELAELLEEALYELEEASEELRAYLDELEFDPNRLEE----VEERLFALKSLARKYGV 318 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH----HHHHHHHHHHHHHHhCC
Confidence 3345566699999887 46999999876 55667778888888873
No 10
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=65.52 E-value=35 Score=42.04 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-HHhhcCCCCchhhhhh-HHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhh
Q 009038 152 VMELETVMNEVFDAVSAMKRAYVS-LQEAHCPWDPERMRVA-DVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALV 229 (546)
Q Consensus 152 ~~~~ealia~lFa~VSslKaAY~q-LQ~Ah~PyDpdkI~aA-D~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~ 229 (546)
...+...+..+|.-..=+-..|.. -.-.--||||..+..+ ..+...||.. |++....... .+....+.++..
T Consensus 102 ~~~Al~~Lk~lf~l~~Wf~~~Y~~~~~~~~~~F~~p~~p~~~~~~~~~~~~~---l~~~~~~~~~---~~~~~~~~~~~~ 175 (1123)
T PRK11448 102 HREALMGLKLAFRLAVWFHRTYGKDWDFKPGPFVPPEDPENLLHALQQEVLT---LKQQLELQAR---EKAQSQALAEAQ 175 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCcchhhhhHHHHHH---HHHHHHHhhh---hhhhhhhhHHHH
Confidence 334555667778777667666655 2233457998877533 3445556554 4444310000 011122233445
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009038 230 REVAAPYEAAVAELKRELKAREVEVDNLKEKLKTV 264 (546)
Q Consensus 230 ~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~ 264 (546)
...++..+.+.++++++..+.+.++..|+++..+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (1123)
T PRK11448 176 QQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667777778888888888888888887776654
No 11
>PRK14140 heat shock protein GrpE; Provisional
Probab=64.07 E-value=8.3 Score=38.32 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=36.6
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEe
Q 009038 487 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYL 542 (546)
Q Consensus 487 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyL 542 (546)
+..+- ..|..|||.++|-|........+ ...|.-.+-+||++|+ .||+ ++|-+
T Consensus 136 V~~i~-~~Ge~FDP~~HEAv~~~~~~~~~-~gtVv~V~qkGY~l~d-RVLRpA~V~V 189 (191)
T PRK14140 136 VEVIE-AVGEQFDPNLHQAVMQDEDEDFE-SNEVVEELQKGYKLKD-RVIRPSMVKV 189 (191)
T ss_pred CEeeC-CCCCCCChHHhccceeeCCCCCC-cCeEEEEeeCCeEeCC-EEecCcEEEe
Confidence 34443 46999999999998763333223 3456688899999999 6665 56654
No 12
>PRK14151 heat shock protein GrpE; Provisional
Probab=62.34 E-value=10 Score=37.04 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=38.5
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 486 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 486 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
.+..+.. .|..|||.++|-|.....+..+ ...|.=.+-+||++|+ .||+ ++|-++
T Consensus 119 Gv~~i~~-~G~~FDP~~HEAv~~~~~~~~~-~gtI~~v~qkGY~l~d-RvLRpA~V~Va 174 (176)
T PRK14151 119 QLEAVDP-HGEPFNPEHHQAMAMQESADVE-PNSVLKVFQKGYLLNG-RLLRPAMVVVS 174 (176)
T ss_pred CCEEeCC-CCCCCCHHHhhcceeeCCCCCC-cCeEEEEeeCCcEECC-EEecCcEEEec
Confidence 4555555 6999999999999864333223 3456678899999998 5554 666554
No 13
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=61.50 E-value=1.9e+02 Score=32.64 Aligned_cols=25 Identities=8% Similarity=0.266 Sum_probs=17.1
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcC
Q 009038 300 VTMCQV-KESSKSFTLQLLSLMRAAH 324 (546)
Q Consensus 300 ~~l~~A-~~Sir~FaK~Li~~Mr~ag 324 (546)
..++.. +++...|++.+..+|+.-|
T Consensus 367 ~~Ls~~R~~~a~~l~~~v~~~l~~L~ 392 (563)
T TIGR00634 367 VALSLIRRKAAERLAKRVEQELKALA 392 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344445 5567788888888888655
No 14
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=61.47 E-value=9.1 Score=35.26 Aligned_cols=52 Identities=25% Similarity=0.411 Sum_probs=36.2
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEE
Q 009038 486 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARV 540 (546)
Q Consensus 486 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crV 540 (546)
.+..+.+ .|..|||.++|-|.....+. .....|.=.+.|||++++ .||+ ++|
T Consensus 83 Gv~~i~~-~g~~FDp~~Heav~~~~~~~-~~~~~I~~v~~~GY~~~~-rvlRpA~V 135 (137)
T cd00446 83 GVEKIEP-EGEPFDPNLHEAVMQVPSPD-VEPGTVVEVLQKGYKLGD-RVLRPAMV 135 (137)
T ss_pred CCEEECC-CCCCCCHHHheeeeeecCCC-CCcCEEEEEeecCeEECC-EEecccEe
Confidence 4555555 37799999999988633332 234467788999999998 6664 444
No 15
>PRK14158 heat shock protein GrpE; Provisional
Probab=59.91 E-value=12 Score=37.18 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=37.8
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 487 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 487 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
+..+....|..|||.+.|-|.....+..+ ...|.=.+-|||++|+ .||+ ++|-++
T Consensus 138 v~~I~~~~G~~FDP~~HEAv~~~~~~~~~-~gtVv~v~qkGY~l~d-RVLRpA~V~Vs 193 (194)
T PRK14158 138 VTPVEAEKGTPFDPAYHQAMCQVESAEQE-PNTVVAVFQKGYLLNE-RLLRPAMVSVA 193 (194)
T ss_pred CEEecCCCCCCCChHHhhhheeecCCCCC-cCEEEEEeeCCcEeCC-EEeecceeEeC
Confidence 44444446999999999988763333223 3467788999999998 6665 566543
No 16
>PRK14148 heat shock protein GrpE; Provisional
Probab=59.84 E-value=11 Score=37.66 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=37.6
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 487 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 487 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
+..+.. .|..|||.+.|-|.....+..+ ...|.=.+-||+++|+ .||+ ++|.++
T Consensus 139 v~~I~~-~G~~FDP~~HEAv~~~~~~~~~-~gtVv~V~qkGY~l~d-RVLRpA~V~Va 193 (195)
T PRK14148 139 VEELDP-KGEKFDPNLHEAMAMIPNPEFE-DNTIFDVFQKGYMLNG-RIVRAAKVVIV 193 (195)
T ss_pred CEEeCC-CCCCCChhHhheeeeeCCCCCC-cCEEEEEeeCCcEeCC-EeeeccEEEeC
Confidence 444544 4999999999999874333323 3456678899999998 6665 566543
No 17
>PRK14162 heat shock protein GrpE; Provisional
Probab=58.94 E-value=13 Score=37.10 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=36.5
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 487 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 487 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
+..+.. .|..|||.+.|-|.....+.......|.=.+-+|+++|+ .||+ ++|.++
T Consensus 138 V~~I~~-~G~~FDP~~HEAv~~~~~~~~~~~gtVv~v~qkGY~l~d-RVLRpA~V~Va 193 (194)
T PRK14162 138 VTEIKA-DGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKD-RTLRPAMVVVA 193 (194)
T ss_pred CEEeCC-CCCCCChhHhhhheeecCCCCCCcCEEEEEeeCCcEeCC-EeeecceEEeC
Confidence 344444 599999999999976322111223456678899999998 6665 566543
No 18
>PRK14154 heat shock protein GrpE; Provisional
Probab=58.71 E-value=16 Score=36.86 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=39.0
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 486 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 486 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
.+..+....|..|||.+.|-|.....+..+ ...|.=.+-+||++++ .||+ ++|-++
T Consensus 151 GVe~I~~~~G~~FDP~~HEAv~~~~~~~~~-~gtVveV~qkGY~l~d-RVLRPA~V~Va 207 (208)
T PRK14154 151 GVQVINPNPGDPFDPALHEAMSVQAVPDAK-PDTIIQVLQKGYQLNG-RVLRAARVIVA 207 (208)
T ss_pred CCEEecCCCCCCCChhHhheeeeeCCCCCC-cCEEEEEeeCCcEeCC-EEecceEEEeC
Confidence 344444456999999999999763333223 3467788999999998 6665 566543
No 19
>PRK11546 zraP zinc resistance protein; Provisional
Probab=58.68 E-value=51 Score=31.64 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=49.1
Q ss_pred HhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhh---hHHHHHHHHHHHHhhhhHH
Q 009038 177 QEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAA---PYEAAVAELKRELKAREVE 253 (546)
Q Consensus 177 Q~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~---tyE~~~~kLe~el~~KDse 253 (546)
|....|..||+.+.+|.+.-.--.+...||+.-.-+. .|++.++. +=+..+++|.+|+..+..+
T Consensus 38 ~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr-------------~ELnALl~~~~pD~~kI~aL~kEI~~Lr~k 104 (143)
T PRK11546 38 QQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKR-------------YEYNALLTANPPDSSKINAVAKEMENLRQS 104 (143)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999888888888887665442 23333332 3355566666666666666
Q ss_pred HHHHHHHHH
Q 009038 254 VDNLKEKLK 262 (546)
Q Consensus 254 I~~Lk~kL~ 262 (546)
+.++|-+++
T Consensus 105 L~e~r~~~~ 113 (143)
T PRK11546 105 LDELRVKRD 113 (143)
T ss_pred HHHHHHHHH
Confidence 666655554
No 20
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=57.41 E-value=1.9e+02 Score=33.07 Aligned_cols=98 Identities=16% Similarity=0.246 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhh
Q 009038 155 LETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAA 234 (546)
Q Consensus 155 ~ealia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~ 234 (546)
.+..+--||.-|-++|.---.|= ++|+.|-++= .++-.|.+.|+...-+.+. ..+....+.+..+
T Consensus 262 f~~~~~~i~~~i~~lk~~n~~l~--------e~i~ea~k~s----~~i~~l~ek~r~l~~D~nk---~~~~~~~mk~K~~ 326 (622)
T COG5185 262 FEKFVHIINTDIANLKTQNDNLY--------EKIQEAMKIS----QKIKTLREKWRALKSDSNK---YENYVNAMKQKSQ 326 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH----HHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHH
Confidence 44566667777777665433331 3444443321 1334566777755443321 0111223566778
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 235 PYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 235 tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
.|-..+++|+.++..|++||..|+++.+++...
T Consensus 327 ~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 327 EWPGKLEKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888899999999999999999999999988654
No 21
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.16 E-value=1.2e+02 Score=32.03 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCC----cc----CC
Q 009038 151 RVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGR----RC----GG 222 (546)
Q Consensus 151 ~~~~~ealia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~----~~----~~ 222 (546)
|..-.+.+...|-..+..|+.-|..|.. .++.+|.++-.=..+.+.|+.....-...... .. ..
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~--------~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~l 214 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDK--------QLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEAL 214 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHH
Confidence 3444678999999999999999998874 34444443332222333333333322111100 00 00
Q ss_pred CCchhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 223 VSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 223 ~a~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
-.....+...|......+.+|+.++..++.+|..+.++..++...
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012223344444444455577777777777777777766655443
No 22
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=55.90 E-value=5.4 Score=35.33 Aligned_cols=16 Identities=44% Similarity=0.955 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhcC
Q 009038 469 LAKAVWLLHLLAFSLD 484 (546)
Q Consensus 469 mAKsVWLLH~LAfSF~ 484 (546)
||+++|+|-+||.++-
T Consensus 1 MaRRlwiLslLAVtLt 16 (100)
T PF05984_consen 1 MARRLWILSLLAVTLT 16 (100)
T ss_pred CchhhHHHHHHHHHHH
Confidence 8999999999999865
No 23
>PRK14160 heat shock protein GrpE; Provisional
Probab=55.33 E-value=16 Score=36.87 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=35.5
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 487 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 487 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
+..+.. .| .|||.+.|-|........+. ..|.-.+-|||++|+ .||+ ++|-++
T Consensus 157 Ve~I~~-~G-~FDP~~HEAv~~~~~~e~~~-gtVveV~qkGY~l~d-RVLRpA~V~Va 210 (211)
T PRK14160 157 VEEIST-EG-EFDPNLHNAVMHVEDENYGE-NEIVEVFQKGYKRGD-KVIRYSMVKVA 210 (211)
T ss_pred CEEeCC-CC-CCChHHhceeeeeCCCCCCc-CeEEEEeeCCcEeCC-EeeecceEEeC
Confidence 334444 36 89999999988643333333 456678899999998 6665 555543
No 24
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.29 E-value=1.2e+02 Score=33.83 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=26.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
..++..++..|.....+|..+++..+.++..|+++|++++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666666666655443
No 25
>PRK14141 heat shock protein GrpE; Provisional
Probab=54.85 E-value=14 Score=37.28 Aligned_cols=55 Identities=16% Similarity=0.405 Sum_probs=38.3
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEeec
Q 009038 487 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 544 (546)
Q Consensus 487 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs~ 544 (546)
+..+.. .|..|||.+.|-|.....+.. ....|.=.+-+||++++ .||+ ++|-++.
T Consensus 136 V~~I~~-~Ge~FDP~~HEAv~~~~~~~~-~~gtVv~V~qkGY~l~d-RVLRpA~V~Vsk 191 (209)
T PRK14141 136 VKKLDP-EGQKFDPNFHQAMFEVPNPDV-PNNTVVQVVQAGYTIGE-RVLRPAMVGVAK 191 (209)
T ss_pred CEEECC-CCCCCChHHhceeeeecCCCC-CcCEEEEEeeCCcEeCC-EeecccEEEECC
Confidence 444443 599999999998876433322 34457788999999999 6665 6676653
No 26
>PRK14144 heat shock protein GrpE; Provisional
Probab=53.53 E-value=18 Score=36.30 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=38.1
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 487 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 487 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
+..+.. -|..|||.++|-|....... .....|.-.+-+||++++ .||+ ++|-++
T Consensus 143 V~~I~~-~G~~FDP~~HEAv~~~~~~~-~~~gtVv~V~qkGY~l~d-RVLRpA~V~Vs 197 (199)
T PRK14144 143 VEQIDP-LGQTFDPQQHEAMSMQPAPG-APPNSVITVFQKGYKLSD-RVIRPARVIVS 197 (199)
T ss_pred CEEeCC-CCCCCChhHhceeeeeCCCC-CCcCeEEEEeeCCcEECC-EEecccEEEec
Confidence 444443 59999999999997633222 234567788999999998 6665 666654
No 27
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=53.03 E-value=62 Score=31.05 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=45.0
Q ss_pred HHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 194 AVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 194 aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
.++.-..+|+.|+++|..--.+.+ .+.+-.++..+-..+.+++.+++..+.++..|+.++..+-+
T Consensus 17 ~~~~~~~kl~kl~r~Y~~lm~g~~--------~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (151)
T PF14584_consen 17 LIIILNIKLRKLKRRYDALMRGKD--------GKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQ 81 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345677899999999997644322 22355666677777777777777777777777777776644
No 28
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.76 E-value=1.6e+02 Score=31.06 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=3.5
Q ss_pred hcchhh
Q 009038 38 VQFNRD 43 (546)
Q Consensus 38 ~~~~~~ 43 (546)
|+|+-|
T Consensus 25 I~F~dD 30 (325)
T PF08317_consen 25 IRFYDD 30 (325)
T ss_pred ceeCCC
Confidence 566555
No 29
>PRK14147 heat shock protein GrpE; Provisional
Probab=52.32 E-value=17 Score=35.46 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=38.2
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 486 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 486 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
.+..+.. .|..|||.+.|-|........+ ...|.=.+-+||++|+ .||+ ++|-++
T Consensus 114 Gv~~i~~-~G~~FDP~~HeAv~~~~~~~~~-~g~Vv~v~qkGY~l~~-RvLRpA~V~Va 169 (172)
T PRK14147 114 GLTLLDP-VGQPFNPEHHQAISQGEAEGVA-PGHVVQVFQKGYLLNE-RLLRPALVVVA 169 (172)
T ss_pred CCEEeCC-CCCCCChHHhceeeeecCCCCC-cCEEEEEeeCCcEeCC-EeccCceEEeC
Confidence 3455554 5999999999998764333223 3457788999999998 7776 455443
No 30
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=52.18 E-value=2.4e+02 Score=30.09 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 009038 153 MELETVMNEVFDAVSAMKRAYVSL 176 (546)
Q Consensus 153 ~~~ealia~lFa~VSslKaAY~qL 176 (546)
.-++-|...|-..+..|++.|..|
T Consensus 140 kllegLk~~L~~~~~~l~~D~~~L 163 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKEDYKLL 163 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335778888899999999888876
No 31
>PRK14153 heat shock protein GrpE; Provisional
Probab=51.59 E-value=23 Score=35.32 Aligned_cols=56 Identities=23% Similarity=0.432 Sum_probs=39.2
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEeec
Q 009038 486 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 544 (546)
Q Consensus 486 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs~ 544 (546)
.+..+.+. |..|||.++|-|........+ ...|.=.+-+||++++ .||+ ++|-++.
T Consensus 131 Gv~~I~~~-G~~FDP~~HEAv~~~~~~~~~-~gtVi~V~qkGY~l~d-RVLRPA~V~Vak 187 (194)
T PRK14153 131 GLERIECE-GEEFDPHRHEAMMHVETSEVP-DNTIVDVCKPGYALNS-KVIRPAMVSVAR 187 (194)
T ss_pred CCeeeCCC-CCCCChhHhceeeeeCCCCCC-cCEEEEEeeCCcEeCC-EEeeCcEEEECC
Confidence 45566654 999999999998764333323 3456677899999999 6655 6676653
No 32
>PRK14145 heat shock protein GrpE; Provisional
Probab=51.47 E-value=18 Score=36.19 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=36.7
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEe
Q 009038 487 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYL 542 (546)
Q Consensus 487 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyL 542 (546)
+..+.. .|..|||.+.|-|........+ ...|.=.+-+|+++|+ .||+ ++|-+
T Consensus 141 Ve~I~~-~Ge~FDP~~HEAv~~~~~~~~~-~gtVv~V~qkGY~l~d-RVLRPA~V~V 194 (196)
T PRK14145 141 VKEIEA-EGQIFDPYKHHAVMQEEVEGKQ-PNEIIEVFQKGYYLKD-KVIRPSLVKV 194 (196)
T ss_pred CEEeCC-CCCCCCchhhheeeeeCCCCCC-cCEEEEEeeCCcEeCC-EeeccceEEe
Confidence 344443 5999999999998864333223 4456788899999998 7765 45544
No 33
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.18 E-value=1e+02 Score=36.83 Aligned_cols=111 Identities=22% Similarity=0.274 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHh-----hcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCC
Q 009038 150 ERVMELETVMNEVFDAVSAMKRAYVSLQE-----AHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVS 224 (546)
Q Consensus 150 ~~~~~~ealia~lFa~VSslKaAY~qLQ~-----Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a 224 (546)
+.++.|++.+.-+---|-+..++|.+||. +|+ -+.--||--+-|--+.|++|+.+--+-+..++.
T Consensus 623 ~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i----~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~------ 692 (1104)
T COG4913 623 ETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHI----QALNFASIDLPSAQRQIAELQARLERLTHTQSD------ 692 (1104)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HhcchhhcchhhHHHHHHHHHHHHHHhcCChhH------
Confidence 66788888888888889999999999996 333 233446666667777788888777655443322
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCC
Q 009038 225 GGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNG 271 (546)
Q Consensus 225 ~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~l 271 (546)
++-.+.-+..-++.++.|+.+.++--.|+..+|+.|+.+....+..
T Consensus 693 -~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~ 738 (1104)
T COG4913 693 -IAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKV 738 (1104)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455677788888899999999999999999998876654333
No 34
>PRK14161 heat shock protein GrpE; Provisional
Probab=50.83 E-value=24 Score=34.67 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=38.5
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEeec
Q 009038 487 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 544 (546)
Q Consensus 487 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs~ 544 (546)
+..+....|..|||.+.|-|........ ....|.=.+-+||++|+ .||+ ++|-++.
T Consensus 120 v~~I~~~~G~~FDP~~HEAv~~~~~~~~-~~gtVi~v~q~GY~l~d-RVLRpA~V~Vak 176 (178)
T PRK14161 120 IEEIKPEIGSMFDYNLHNAISQIEHPDH-APNSIITLMQSGYKIRD-RLLRPATVQVVK 176 (178)
T ss_pred CEEecCCCCCCCChHHhhhheeeCCCCC-CcCEEEEEeeCCcEeCC-EeecCceEEeCC
Confidence 3444444599999999999887433322 34567788899999999 6665 5665543
No 35
>PRK10325 heat shock protein GrpE; Provisional
Probab=50.72 E-value=16 Score=36.24 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=37.9
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 486 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 486 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
.+..+. ..|..|||.+.|-|.....+..+.+ .|.=.+-+|+++|+ .||+ ++|-++
T Consensus 138 Gv~~i~-~~G~~FDP~~HEAv~~~~~~~~~~~-~Vv~v~qkGY~l~d-rvlRpA~V~Vs 193 (197)
T PRK10325 138 GVEVIA-ETNVPLDPNVHQAIAMVESDDVAPG-NVLGIMQKGYTLNG-RTIRAAMVTVA 193 (197)
T ss_pred cCeeeC-CCCCCCChhHhceeeeeCCCCCCcC-eEEEEeeCCcEeCC-EeccCceEEeC
Confidence 344454 3699999999999986433333334 45567889999998 6665 666654
No 36
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.50 E-value=83 Score=31.01 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 234 APYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 234 ~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
...+..+.+|++++.....+|..|+++|+.+...
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~ 98 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG 98 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677888899999999999999999888553
No 37
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=48.12 E-value=1.4e+02 Score=28.36 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhh
Q 009038 150 ERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALV 229 (546)
Q Consensus 150 ~~~~~~ealia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~ 229 (546)
+++++.+.+|-.=....|-||.-|..=| .+|....+.-.+-+.|++.+-.-.+.- ...+
T Consensus 41 d~I~aAD~~vVsEL~~Ls~LK~~y~~~~-----~~~~~~~~~l~a~~~e~qsli~~yE~~----------------~~kL 99 (131)
T PF04859_consen 41 DKIQAADEAVVSELRRLSELKRRYRKKQ-----SDPSPQVARLAAEIQEQQSLIKTYEIV----------------VKKL 99 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCccccccccchHHHHHHHHHHHHH----------------HHHH
Confidence 5677777777777799999999999754 445544444444455655554333322 3557
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009038 230 REVAAPYEAAVAELKRELKAREVEVDNLKEK 260 (546)
Q Consensus 230 ~s~i~tyE~~~~kLe~el~~KDseI~~Lk~k 260 (546)
++.++..+.-+..|..+|......-..|.++
T Consensus 100 e~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 100 EAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7888888888888888888777766666554
No 38
>PRK14155 heat shock protein GrpE; Provisional
Probab=47.91 E-value=30 Score=34.90 Aligned_cols=57 Identities=16% Similarity=0.322 Sum_probs=39.9
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEeec
Q 009038 486 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 544 (546)
Q Consensus 486 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs~ 544 (546)
.+..+.+..|..|||.+.|-|........ ....|.=.+-+|+++++ .||+ ++|-++.
T Consensus 114 GV~~I~~~~G~~FDP~~HEAv~~~~~~~~-~~gtVi~V~qkGY~l~d-RVLRPA~V~Vak 171 (208)
T PRK14155 114 GLKKIDPAKGDKFDPHLHQAMMEQPSTEV-AAGGVLQVMQAGYELMG-RLVRPAMVAVAA 171 (208)
T ss_pred CCceecCCCCCCCChhHhceeeeecCCCC-CcCeEEEEeeCCeEeCC-EeeccceEEECC
Confidence 45555555799999999998876332322 34457778899999998 6665 6666553
No 39
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=47.75 E-value=2.1e+02 Score=26.63 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=49.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhHH
Q 009038 158 VMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYE 237 (546)
Q Consensus 158 lia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~tyE 237 (546)
-+.++=..+..++..+-.|+ +.+..+..-+.+--.+...|+..++.-... .-....+++.+-....
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~--------~~~~~~ere~~~~~~~~~~l~~~~~~~~~~------~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLK--------EQLEELERELASAEEKERQLQKQLKSLEAK------LKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 33344444444444444443 444444444444444444444444322110 0012234455555555
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Q 009038 238 AAVAELKRELKAREVEVDNLKEKLK 262 (546)
Q Consensus 238 ~~~~kLe~el~~KDseI~~Lk~kL~ 262 (546)
..-...+-+++.||-||+.||++|.
T Consensus 126 ~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 126 QRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666789999999999999999885
No 40
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=46.99 E-value=1.1e+02 Score=29.64 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCC
Q 009038 150 ERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGG 216 (546)
Q Consensus 150 ~~~~~~ealia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~ 216 (546)
+++..++.+..++|..|- . ||+++..|+.-+--.|-.+-+|=+.|.+-...+
T Consensus 101 ~~~~~~~~~~~~I~~~v~----------~-----~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~ 152 (199)
T PF10112_consen 101 EKVSRIEKIARRIFKYVE----------K-----DPERLTQARKFLYYYLPTAVKLLEKYAELESQP 152 (199)
T ss_pred HHHHHHHHHHHHHHHHHH----------H-----CHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 445555555555555443 2 799999999999999999999999999876544
No 41
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.16 E-value=53 Score=31.71 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 231 EVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 231 s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
+..+..+..+++|+.|+.+++.+++.||++.+.++.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677788899999999999999999999887654
No 42
>PRK09039 hypothetical protein; Validated
Probab=43.79 E-value=1.6e+02 Score=31.64 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=8.8
Q ss_pred HhhhHhHHHHhhc
Q 009038 200 RKIGVLRERLKRR 212 (546)
Q Consensus 200 ~~LseLK~~y~~~ 212 (546)
+.|+++|..|.+.
T Consensus 123 ~~L~~~k~~~se~ 135 (343)
T PRK09039 123 QELDSEKQVSARA 135 (343)
T ss_pred HHHHHHHHHHHHh
Confidence 4677777777754
No 43
>PRK14139 heat shock protein GrpE; Provisional
Probab=43.65 E-value=34 Score=33.96 Aligned_cols=55 Identities=13% Similarity=0.299 Sum_probs=39.2
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEeec
Q 009038 486 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 544 (546)
Q Consensus 486 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs~ 544 (546)
.+..+.. .|..|||.++|-|.....+ . ....|.=.+-+||++|+ .||+ ++|-++.
T Consensus 128 Gv~~I~~-~G~~FDP~~HEAv~~~~~~-~-~~gtVi~V~qkGY~l~d-RVLRPA~V~Vak 183 (185)
T PRK14139 128 RVVEINP-VGEKFDPHQHQAISMVPAE-Q-EPNTVVAVLQKGYTIAD-RVLRPALVTVAA 183 (185)
T ss_pred CCceeCC-CCCCCChHHhheeeeecCC-C-CcCEEEEEeeCCcEeCC-EeccCceEEeCC
Confidence 3455555 5999999999999864332 2 34567788999999999 6665 5665543
No 44
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=43.02 E-value=1.5e+02 Score=26.15 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=34.3
Q ss_pred CCCCchhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 009038 221 GGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVT 265 (546)
Q Consensus 221 ~~~a~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~ 265 (546)
.+.+...-..++.........+|++.++..+.+-..|.++|.+..
T Consensus 63 ~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 63 SLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred CCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455666677788899999999999999999988887654
No 45
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=42.95 E-value=62 Score=30.34 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=29.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKE 259 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~ 259 (546)
-++-+.+++-|....++|+++++.++..|+++.+
T Consensus 88 k~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 88 KDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999999888754
No 46
>PRK14146 heat shock protein GrpE; Provisional
Probab=42.42 E-value=27 Score=35.33 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=35.1
Q ss_pred CCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCc---cEEE-EEEEee
Q 009038 494 RGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNG---SIIK-ARVYLG 543 (546)
Q Consensus 494 rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~---tVik-crVyLs 543 (546)
.|..|||.++|-|.....+..+ ...|.-.+-+||++|++ .||+ ++|-++
T Consensus 159 ~G~~FDP~~HeAv~~~~~~~~~-~g~Vv~v~qkGY~l~~r~~~RvLRpA~V~Va 211 (215)
T PRK14146 159 KGEPFDPMSMEALSSEEGDQYS-EETVIDVYQAGYYYKENEDKFTLRPARVRIG 211 (215)
T ss_pred CCCCCChhHhceeeeecCCCCC-cCEEEEEeeCCeEeCCccCCeeccCceEEeC
Confidence 6999999999999864333323 34466788999999973 3665 566554
No 47
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=41.67 E-value=1.2e+02 Score=25.67 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=16.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009038 228 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKL 261 (546)
Q Consensus 228 e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL 261 (546)
.+|.-++.-|..+.+|..++...+.++..|+..|
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444555555555555555544444
No 48
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.57 E-value=36 Score=31.52 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 238 AAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 238 ~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
.++++|+++|+.+|.|+..|+.+|..+...
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888877664
No 49
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=40.62 E-value=1.7e+02 Score=28.84 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhh
Q 009038 156 ETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVA 191 (546)
Q Consensus 156 ealia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aA 191 (546)
..|+.+|.+....+=+||..|....+-|.-.+...+
T Consensus 83 GlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~ 118 (189)
T PF10211_consen 83 GLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQA 118 (189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999887766654443333
No 50
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=39.60 E-value=52 Score=31.76 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHH--hhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCch
Q 009038 149 IERVMELETVMNEVFDAVSAMKRAYVSLQ--EAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGG 226 (546)
Q Consensus 149 ~~~~~~~ealia~lFa~VSslKaAY~qLQ--~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~ 226 (546)
..+..++..|.. ++-.+|++|= .+..|=+.+. ++..|+-.|.+... .+
T Consensus 71 ~d~~~eLkkL~~-------sll~nfleLl~~l~~~P~~~~~-------------ki~~i~~L~~Nmhh----------ll 120 (162)
T PF05983_consen 71 VDRKKELKKLNK-------SLLLNFLELLDILSKNPSQYER-------------KIEDIRLLFINMHH----------LL 120 (162)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHTTSS---CCCHHH-------------HHHHHHHHHHHHHH----------HH
T ss_pred chHHHHHHHHHH-------HHHHHHHHHHHHHHhCCccHHH-------------HHHHHHHHHHHHHH----------HH
Confidence 345555555554 4556677773 4455522222 55555555554322 11
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 227 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 227 ~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
.+.|. ..++|.++.-|+.|++.|..+|+.+++.++++..
T Consensus 121 NeyRP-hQARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~ 159 (162)
T PF05983_consen 121 NEYRP-HQARETLIMMMEEQLEEKREEIEEIRKVCEKARE 159 (162)
T ss_dssp HHTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 4667889999999999999999999999998865
No 51
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.76 E-value=98 Score=29.35 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=19.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 241 AELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 241 ~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
.+|..++.....+|..|..+|+.+.+
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777777766
No 52
>PRK14143 heat shock protein GrpE; Provisional
Probab=37.64 E-value=37 Score=34.91 Aligned_cols=55 Identities=24% Similarity=0.440 Sum_probs=37.9
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 486 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 486 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
.+..+.+ .|..|||.+.|-|.....+..+ ...|.=.+-+||++|+ .||+ ++|-++
T Consensus 166 GV~~i~~-~G~~FDP~~HEAv~~~~~~~~~-~gtVv~v~qkGY~l~~-RVLRpA~V~Vs 221 (238)
T PRK14143 166 GVSPMRV-VGQEFDPNLHEAVLREPSDEHP-EDVVLEELQRGYHLGG-RVLRHAMVKVS 221 (238)
T ss_pred CCeeeCC-CCCCCChHHhheeeeecCCCCC-cCeEEEEeeCCceeCC-EecccceEEEC
Confidence 3444554 6999999999988763333223 3446668899999998 6665 566655
No 53
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=37.57 E-value=30 Score=25.93 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCHHHHHHhh
Q 009038 315 QLLSLMRAAHWDIAAAVRSI 334 (546)
Q Consensus 315 ~Li~~Mr~agwDl~aAa~sI 334 (546)
.-+..|+.++|||..|+++.
T Consensus 17 ~A~~~L~~~~wdle~Av~~y 36 (43)
T PF14555_consen 17 VAIQYLEANNWDLEAAVNAY 36 (43)
T ss_dssp HHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 34678899999999999865
No 54
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.35 E-value=51 Score=35.01 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCC-CCCCCcccccccCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 009038 233 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGG-KKGRSLSKRKVNCSSQVAAAPSPDLFEVTMCQVKESSKS 311 (546)
Q Consensus 233 i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~le-Kr~~~~~~~~~~~~~~l~~~~sp~lF~~~l~~A~~Sir~ 311 (546)
|+-..+-+++-+..|..+|+||++||.+|......=-.-| +| +- =.-+|.+||+-|++
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHR--------VE-------------AQLALKEARkEIkQ 128 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHR--------VE-------------AQLALKEARKEIKQ 128 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-------------HHHHHHHHHHHHHH
Confidence 4555677778888889999999999999975543210000 00 00 12367889999988
Q ss_pred HHHHHHHHHHhc
Q 009038 312 FTLQLLSLMRAA 323 (546)
Q Consensus 312 FaK~Li~~Mr~a 323 (546)
. |-.|.-||+.
T Consensus 129 L-kQvieTmrss 139 (305)
T PF15290_consen 129 L-KQVIETMRSS 139 (305)
T ss_pred H-HHHHHHHHhh
Confidence 6 6677778766
No 55
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=37.33 E-value=2.3e+02 Score=23.78 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=45.8
Q ss_pred HHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 009038 195 VVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 268 (546)
Q Consensus 195 VVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n 268 (546)
.-.+|..|-..+..|........ ...........+.-+...+..+..++.++...+.++..+++.|.++...-
T Consensus 17 ~~~~l~~L~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQEQLSESQ-QGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHT------SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666777744433222 11222344456777777788888888888888888888888887776543
No 56
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=36.83 E-value=2.7e+02 Score=32.98 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=56.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCCCC-CCCccccc-ccC-CCCCCCCCChH-----HHH
Q 009038 228 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGGKK-GRSLSKRK-VNC-SSQVAAAPSPD-----LFE 299 (546)
Q Consensus 228 e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~leKr-~~~~~~~~-~~~-~~~l~~~~sp~-----lF~ 299 (546)
.++...+..|.-+++|+.|++.||.++..|.+++.++...+...++- ....+... +-| +.|+...++.| -+-
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 48888999999999999999999999999999998776642111010 00000000 000 11222233332 133
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009038 300 VTMCQVKESSKSFTLQLLSLM 320 (546)
Q Consensus 300 ~~l~~A~~Sir~FaK~Li~~M 320 (546)
.+|..|++=+...-..++..=
T Consensus 622 saLg~akrq~ei~~~~~~~~d 642 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKD 642 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678888888877777666543
No 57
>PRK14163 heat shock protein GrpE; Provisional
Probab=35.83 E-value=31 Score=34.99 Aligned_cols=54 Identities=24% Similarity=0.420 Sum_probs=37.8
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 487 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 487 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
+..+.. .|..|||.+-|-|........+ ...|.=.+-+||++|+ .||+ ++|-++
T Consensus 132 v~~I~~-~G~~FDP~~HEAv~~~~~~~~~-~gtVv~v~qkGY~l~~-RVLRPA~V~Vs 186 (214)
T PRK14163 132 LQQFGK-EGEPFDPTIHEALMHSYAPDVT-ETTCVAILQPGYRIGE-RTIRPARVAVA 186 (214)
T ss_pred CEEeCC-CCCCCChhHhceeeeecCCCCC-cCEEEEEeeCCcCcCC-EeccCceEEEC
Confidence 444443 6999999999998763333323 3456688899999999 6665 566554
No 58
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.91 E-value=1.1e+02 Score=28.75 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=49.9
Q ss_pred HHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 009038 195 VVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 268 (546)
Q Consensus 195 VVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n 268 (546)
+..||.+|.+=---|+....-.-+. .-.-...++...+.++|.-++-|+++.+..+.++..|+.+|..+-...
T Consensus 42 al~Ele~l~eD~~vYk~VG~llvk~-~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 42 ALEELEKLDEDAPVYKKVGNLLVKV-SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHhcCCcccHHHHHhhhHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556666666555555331110010 001124578899999999999999999999999999999998876654
No 59
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.77 E-value=92 Score=27.43 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=28.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 009038 228 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVT 265 (546)
Q Consensus 228 e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~ 265 (546)
.+...+...+..+++|++++..++.++..|+.+|.++.
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677777777888888888888888888877653
No 60
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.64 E-value=1.1e+02 Score=31.77 Aligned_cols=95 Identities=21% Similarity=0.297 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcCCC-------Cchhhhh--hHHHHHHHHHhhh------HhHHHHhhccCCCCCccC
Q 009038 157 TVMNEVFDAVSAMKRAYVSLQEAHCPW-------DPERMRV--ADVAVVGELRKIG------VLRERLKRRSFGGGRRCG 221 (546)
Q Consensus 157 alia~lFa~VSslKaAY~qLQ~Ah~Py-------DpdkI~a--AD~aVVsEL~~Ls------eLK~~y~~~~~~~~~~~~ 221 (546)
.|-.++|...+++-- ..-.--.|| |+|-|+. -.++|-+=|+.|- +||+.|..-
T Consensus 73 eLA~kf~eeLrg~VG---hiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~--------- 140 (290)
T COG4026 73 ELAEKFFEELRGMVG---HIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEEL--------- 140 (290)
T ss_pred HHHHHHHHHHHHhhh---hhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH---------
Confidence 344556665555432 223334566 3433332 2334555566555 888888732
Q ss_pred CCCchhh-hhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCC
Q 009038 222 GVSGGAL-VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGG 272 (546)
Q Consensus 222 ~~a~~~e-~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~le 272 (546)
.+ ++++++..+.+ -.++..++++...+++.|.++...|+.++
T Consensus 141 -----kekl~E~~~EkeeL----~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 141 -----KEKLEELQKEKEEL----LKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred -----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 44455544444 34445566777777777777766665555
No 61
>PRK14142 heat shock protein GrpE; Provisional
Probab=34.60 E-value=47 Score=34.01 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=35.0
Q ss_pred CCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 494 RGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 494 rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
.|..|||.+.|-|.....+.......|.-.+-+||++++ .||+ ++|-++
T Consensus 132 ~Ge~FDP~~HEAv~~ve~~e~~~~~tVveV~QkGYkL~d-RVLRPA~V~Vs 181 (223)
T PRK14142 132 EGEDFDPVLHEAVQHEGDGGQGSKPVIGTVMRQGYQLGE-QVLRHALVGVV 181 (223)
T ss_pred CCCCCChhhhceeeeecCCCCCCCCEEEEEecCCcEeCC-EeccCceEEEC
Confidence 599999999998865322221223468888889999998 6665 566654
No 62
>PRK14159 heat shock protein GrpE; Provisional
Probab=34.48 E-value=57 Score=32.13 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=32.2
Q ss_pred CCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEe
Q 009038 495 GAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYL 542 (546)
Q Consensus 495 G~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyL 542 (546)
| .|||.+.|-|.....+..+ ...|.-.+-+|+++|+ .||+ ++|-+
T Consensus 129 G-~FDP~~HEAv~~~~~~~~~-~gtVv~v~qkGY~l~d-RVLRpA~V~V 174 (176)
T PRK14159 129 K-EFDPNLHEAMFHVDSENHQ-SGEVVQVLQKGYKIAD-RVIRPTKVSV 174 (176)
T ss_pred C-CCChHHhhhhheeCCCCCC-cCeEEEEeeCCcEeCC-EeeecceeEe
Confidence 6 6999999999764333223 3456688899999998 6665 45544
No 63
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=33.57 E-value=1.2e+02 Score=25.14 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=35.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCC
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNG 271 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~l 271 (546)
+.++...+.-.|-++++|...+-....+|+.|++.|..+..+-..+
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467788888899999999999999999999999998887754433
No 64
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.34 E-value=1e+02 Score=24.82 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=23.4
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 230 REVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 230 ~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
...+...|..+..|+.+......++..|+.++..+..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666666666666666666666666554
No 65
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.91 E-value=6.1e+02 Score=26.75 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHH-hhhHhHHHHh
Q 009038 153 MELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELR-KIGVLRERLK 210 (546)
Q Consensus 153 ~~~ealia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~-~LseLK~~y~ 210 (546)
.-++.-+.++-..+.....+..+.|..|-=+||+.=..+-.-.+++|+ .|++++..+.
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~ 231 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLA 231 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888888899999999999999885555555666666 4555544443
No 66
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=31.27 E-value=40 Score=30.73 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccC
Q 009038 233 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNN 270 (546)
Q Consensus 233 i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~ 270 (546)
+-+.+.-..+|+.+|+.||..|-.+.++++.++=+|..
T Consensus 21 VieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~Q 58 (102)
T PF10205_consen 21 VIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQ 58 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555444444444333
No 67
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=30.84 E-value=1.2e+02 Score=36.20 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=53.3
Q ss_pred hhhhHHHHHHHHHhhhHhHHH--HhhccCCCC--Ccc-CCCCchhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009038 188 MRVADVAVVGELRKIGVLRER--LKRRSFGGG--RRC-GGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLK 262 (546)
Q Consensus 188 I~aAD~aVVsEL~~LseLK~~--y~~~~~~~~--~~~-~~~a~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~ 262 (546)
+.+=-.-.|.|+|+.-||-|. |.+++-... +.. .......++.+.|.+.|..++|||.|+++.+.--..||+.+-
T Consensus 44 v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~ 123 (829)
T KOG2189|consen 44 VSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYN 123 (829)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344445567889988888664 444442221 110 001112346677899999999999999999999999998876
Q ss_pred HHhcc
Q 009038 263 TVTGL 267 (546)
Q Consensus 263 e~~~~ 267 (546)
++...
T Consensus 124 eL~E~ 128 (829)
T KOG2189|consen 124 ELLEL 128 (829)
T ss_pred HHHHH
Confidence 66544
No 68
>PRK14157 heat shock protein GrpE; Provisional
Probab=30.78 E-value=58 Score=33.44 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=35.4
Q ss_pred CCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 494 RGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 494 rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
.|..|||.+-|-|....... .....|.=.+-+|+++++ .||+ ++|-++
T Consensus 175 ~Ge~FDP~~HEAV~~~~~~~-~~~gtVi~V~QkGY~l~d-RVLRPA~V~Va 223 (227)
T PRK14157 175 KGEDFDPTKHDAILHKPDPD-AEKETVDTVVEAGYRIGD-RVIRAARVVVA 223 (227)
T ss_pred CCCCCChhhhceeeeecCCC-CCcCEEEEEeeCCceeCC-EeccCceEEeC
Confidence 59999999999987633232 234568888999999998 6665 566554
No 69
>PRK11637 AmiB activator; Provisional
Probab=30.59 E-value=7.3e+02 Score=27.01 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=6.2
Q ss_pred cCCCccccccc
Q 009038 493 SRGAEFHPQYM 503 (546)
Q Consensus 493 ~rG~~F~~~YM 503 (546)
.-|.-|..+|.
T Consensus 366 ~hg~g~~t~Y~ 376 (428)
T PRK11637 366 EHGKGDMSLYG 376 (428)
T ss_pred EeCCCcEEEcc
Confidence 33445666664
No 70
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.99 E-value=7.1e+02 Score=26.60 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=14.7
Q ss_pred hhhhhhHHHHHHHHHhhhHhHHHHhhc
Q 009038 186 ERMRVADVAVVGELRKIGVLRERLKRR 212 (546)
Q Consensus 186 dkI~aAD~aVVsEL~~LseLK~~y~~~ 212 (546)
+.++.-++.+..++..|.+++...++.
T Consensus 154 ~~l~~D~~~L~~~~~~l~~~~~~l~~~ 180 (312)
T smart00787 154 EGLKEDYKLLMKELELLNSIKPKLRDR 180 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555665555555444433
No 71
>PRK14149 heat shock protein GrpE; Provisional
Probab=29.85 E-value=82 Score=31.49 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=35.0
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 487 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 487 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
+..+.. .| .|||.+.|-|.....+..+ ...|.=.+-||+++++ .||+ ++|-++
T Consensus 135 V~~I~~-~G-~FDP~~HEAv~~v~~~~~~-~gtVv~V~QkGY~l~d-RVLRPA~V~Va 188 (191)
T PRK14149 135 IEGIEC-LE-EFDPNFHNAIMQVKSEEKE-NGKIVQVLQQGYKYKG-RVLRPAMVSIA 188 (191)
T ss_pred CEEeCC-CC-CCChHHhheeeeecCCCCC-cCEEEEEeeCCcEeCC-EEeeccEEEeC
Confidence 344443 36 5999999988764333223 3456678899999998 6665 566554
No 72
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=29.83 E-value=1.6e+02 Score=33.27 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHHHHH-HHhHHHHHHHH-HHhhcC-CCCchhhhhhHHHHHHHHHhhh-HhHHHHhhccCCCCCccCCCC
Q 009038 149 IERVMELETVMNEVFD-AVSAMKRAYVS-LQEAHC-PWDPERMRVADVAVVGELRKIG-VLRERLKRRSFGGGRRCGGVS 224 (546)
Q Consensus 149 ~~~~~~~ealia~lFa-~VSslKaAY~q-LQ~Ah~-PyDpdkI~aAD~aVVsEL~~Ls-eLK~~y~~~~~~~~~~~~~~a 224 (546)
+..+..-|..|.++-. -+...|.-|.. +|.|-. -=+..-++++-++|..-|+.|- .+|++=.+...- +-..-.
T Consensus 331 eSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~---~E~n~~ 407 (493)
T KOG0804|consen 331 ESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEE---REENKK 407 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 3555566666665555 56666655542 222222 2222334444445544443332 122221111100 000111
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 225 GGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 225 ~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
.+..|+.....++.+-+.+++++..+|..|..|+++|..+.-.
T Consensus 408 l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 408 LIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhee
Confidence 2344667777888888889999999999999999999988554
No 73
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.61 E-value=2.3e+02 Score=31.01 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=34.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
.+++.+-.+..+++.+.||.|+...+..|+-|+.+.+|+..
T Consensus 241 ~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~ 281 (365)
T KOG2391|consen 241 EEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALE 281 (365)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 35677777888899999999999999999999999999544
No 74
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=29.48 E-value=4.6e+02 Score=26.55 Aligned_cols=182 Identities=15% Similarity=0.226 Sum_probs=90.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCC--CCc
Q 009038 148 SIERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGG--VSG 225 (546)
Q Consensus 148 ~~~~~~~~ealia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~--~a~ 225 (546)
++++++.++|++-. -..+.|||+- |++-+--.+||-=.+ +|=+...+...-..-..+. .-|
T Consensus 8 ~~eKrr~L~aI~~~--------SKdFFqLkEv------EkLGSKK~IVl~tVK---d~lQqlVDDgvV~~EK~GtsN~YW 70 (209)
T COG5124 8 LAEKRRRLEAIFHD--------SKDFFQLKEV------EKLGSKKQIVLMTVK---DLLQQLVDDGVVSVEKCGTSNIYW 70 (209)
T ss_pred HHHHHHHHHHHHhc--------cHHHHHHHHH------HHhccccccHHHHHH---HHHHHHhhcCceeeeeeccceeEE
Confidence 45666666665432 1346788864 566666666654333 2233333221100001110 001
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCCCCCCCcccccccCCCCCCCCCChHHHHHHHHHH
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGGKKGRSLSKRKVNCSSQVAAAPSPDLFEVTMCQV 305 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~leKr~~~~~~~~~~~~~~l~~~~sp~lF~~~l~~A 305 (546)
.= -..-++..+-..+.|+++++..--.|..+++.|+--.+.. .|.+ .. ++ ......+|-++
T Consensus 71 sF-~s~~~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~~ek~~r---~k~~---Te---~~---------~n~~~~~Ll~~ 131 (209)
T COG5124 71 SF-KSQTLQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKATR---RKKF---TE---GQ---------KNYNREALLEK 131 (209)
T ss_pred ec-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh---hccc---cc---ch---------hhHHHHHHHHH
Confidence 00 0111344456667777777777777777777776433211 0111 01 11 11245677778
Q ss_pred HHHHHHHHHHHHHHHHh---cCCCHHHHHH---hhcccCCCCCCCCCCCccccccCCcchHHHHHHhHHHHhccCC--CC
Q 009038 306 KESSKSFTLQLLSLMRA---AHWDIAAAVR---SIGAAAGNGPDTINSSATSVVSTHHAKYALQSYISCKIFQGFD--HE 377 (546)
Q Consensus 306 ~~Sir~FaK~Li~~Mr~---agwDl~aAa~---sI~~~vv~~k~~~~~~~~~~~~~~h~kfalEAyV~r~MF~gFe--~e 377 (546)
+++..+--|.=++-+.. -.||+.-+-. ..+. -...+.-+-+.+|+|+.||..=+ ++
T Consensus 132 ~k~eqd~~k~~l~~l~~~~pi~~d~~~~~~kk~~~~~----------------n~~tDnI~ilidy~c~kf~~~~~qir~ 195 (209)
T COG5124 132 RKKEQDEIKKKLNSLQKIEPIRWDAAKIQEKKKKVHL----------------NKTTDNIEILIDYLCKKFFLKPEQIRK 195 (209)
T ss_pred HHHHHHHHHHHhccccccCchhHHHHhhhHHHHHHHH----------------HhhhhhHHHHHHHHHHHcCCCHHHHHH
Confidence 88888777754444432 2566543211 0000 11245678899999999997543 24
Q ss_pred Cccc
Q 009038 378 TFYM 381 (546)
Q Consensus 378 ~F~~ 381 (546)
.|++
T Consensus 196 ~fgI 199 (209)
T COG5124 196 EFGI 199 (209)
T ss_pred hcCC
Confidence 4543
No 75
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=29.21 E-value=82 Score=36.63 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=33.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTV 264 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~ 264 (546)
.|+++|.|..|...+++|+..+-.+..|+..||..++++
T Consensus 102 rqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 102 RQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 478899999999999999999999999888888776544
No 76
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.90 E-value=2.4e+02 Score=32.11 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 009038 236 YEAAVAELKRELKAREVEVDNLKEKLKTVT 265 (546)
Q Consensus 236 yE~~~~kLe~el~~KDseI~~Lk~kL~e~~ 265 (546)
-....+++|++|+.+++|+..|+.+++.+.
T Consensus 95 ~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 95 LNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 335566778888888888888888885433
No 77
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=27.60 E-value=95 Score=31.94 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 236 YEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 236 yE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
.|-.++-|++++.++|.+|..|.+.|.+|+.
T Consensus 72 ~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~ 102 (272)
T KOG4552|consen 72 REQLMRTLEAHVEKRDEVIQQLQKNLKSAEV 102 (272)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3556677899999999999999999987754
No 78
>smart00338 BRLZ basic region leucin zipper.
Probab=27.45 E-value=1.1e+02 Score=24.55 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009038 233 AAPYEAAVAELKRELKAREVEVDNLKEKLKTV 264 (546)
Q Consensus 233 i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~ 264 (546)
+...|.-+..|+++...+-.++..|+.++..+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 79
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.94 E-value=1.7e+02 Score=26.04 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=39.2
Q ss_pred HHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009038 194 AVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTV 264 (546)
Q Consensus 194 aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~ 264 (546)
.|..||..|.+=..+|+--..---... ..-....+...+...+..+++|++++..+...+.+++.+|+++
T Consensus 38 ~v~~eL~~l~~d~~vyk~VG~vlv~~~-~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 38 KALEELERLPDDTPVYKSVGNLLVKTD-KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHcCCCcchhHHHhchhhheec-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888776677763211000000 0001234556666666666666666666666666666666654
No 80
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=26.90 E-value=2e+02 Score=34.00 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=32.9
Q ss_pred CchhhhhhhhhhHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 009038 224 SGGALVREVAAPYEA---AVAELKRELKAREVEVDNLKEKLKTVTGLN 268 (546)
Q Consensus 224 a~~~e~~s~i~tyE~---~~~kLe~el~~KDseI~~Lk~kL~e~~~~n 268 (546)
|+.+--+.|...+.. .++-++.++++||.||..||.+|.++.+--
T Consensus 612 aEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 612 AETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444445555555543 345567899999999999999999987743
No 81
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.87 E-value=1.5e+02 Score=26.45 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=19.5
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 229 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 229 ~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
.-+++...+.-++.++..++..+..+..|++++.++..
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555555555443
No 82
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.54 E-value=98 Score=36.09 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=25.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 228 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 228 e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
-....|..++.++++|+.|++.++.++++|+..+..+.+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~ 457 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLES 457 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777666666666554444
No 83
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.88 E-value=5.5e+02 Score=28.40 Aligned_cols=97 Identities=16% Similarity=0.252 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhh
Q 009038 149 IERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGAL 228 (546)
Q Consensus 149 ~~~~~~~ealia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e 228 (546)
..+...+...+..|=..+..+..+..++|.... .+..+ .+++.++++........ +..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~-----~~~~~-------~~~i~el~~~i~~~~~~----------i~~ 355 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMD-----EFNEQ-------SKKLLELKNKISTNKQS----------LIT 355 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-------HHHHHHHHHHHHHHHHH----------HHH
Confidence 466777777888888888888888887777553 11111 34455555544433221 222
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 229 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 229 ~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
........+.-+.+|+.+....+.++..|..+|+++...
T Consensus 356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555555555555443
No 84
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=25.80 E-value=2e+02 Score=24.00 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 235 PYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 235 tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
..+..+++-+++.+....+|..|+++++++.+
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555556666677777777788887777654
No 85
>PRK00736 hypothetical protein; Provisional
Probab=25.24 E-value=1.9e+02 Score=24.20 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=33.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
+.++...+.--|.++++|...+-....+|+.|+++|..+..+
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777788888888888888888888888888777553
No 86
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=25.09 E-value=92 Score=31.54 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCC
Q 009038 233 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGG 272 (546)
Q Consensus 233 i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~le 272 (546)
|.-.-..+++.++|+..|++||..||..|.+........+
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~ 51 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKE 51 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhH
Confidence 3444456788999999999999999999998877654443
No 87
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=24.93 E-value=2.1e+02 Score=25.27 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=28.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009038 227 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKT 263 (546)
Q Consensus 227 ~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e 263 (546)
++.-..|..-|..+.+||.-+...|..+..|..++..
T Consensus 62 ~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 62 QPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455557777888888888888888888888887754
No 88
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=24.78 E-value=7e+02 Score=25.80 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhc
Q 009038 169 MKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRR 212 (546)
Q Consensus 169 lKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~ 212 (546)
++.+-.+|+.+..-+....|..+...+...-..|...++.|.+.
T Consensus 90 l~~~~~~l~~~~~~~~~~~i~~~~~~l~~ak~~l~~a~~~~~r~ 133 (331)
T PRK03598 90 VSVAQAQLDLMLAGYRDEEIAQARAAVKQAQAAYDYAQNFYNRQ 133 (331)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555544555556665555544444555555555544
No 89
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=24.42 E-value=3.2e+02 Score=29.61 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCC
Q 009038 237 EAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGG 272 (546)
Q Consensus 237 E~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~le 272 (546)
..-+.+|+.+|...+.|+.-++++|.-+...|..++
T Consensus 181 qkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~Llq 216 (323)
T PF08537_consen 181 QKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQ 216 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777777777777777777777766553
No 90
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=24.19 E-value=1.7e+02 Score=26.24 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=47.2
Q ss_pred HHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCC
Q 009038 194 AVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGG 272 (546)
Q Consensus 194 aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~le 272 (546)
.....|..|.+.+..|...-................+.-+......+...+.++.....+++..++.|.++...-+.++
T Consensus 31 ~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~le 109 (141)
T TIGR02473 31 RLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALE 109 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777654211100001112233455666666777777777777777778888888777766544443
No 91
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.98 E-value=1.4e+02 Score=30.00 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=29.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCC
Q 009038 228 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNG 271 (546)
Q Consensus 228 e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~l 271 (546)
+++..++.-+..+.+|+.+.+....++..++.+++.++..|..+
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566677777777777777777777776665444
No 92
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=23.59 E-value=4.7e+02 Score=30.01 Aligned_cols=169 Identities=17% Similarity=0.177 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhh
Q 009038 150 ERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALV 229 (546)
Q Consensus 150 ~~~~~~ealia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~ 229 (546)
-+.+.+|+-=..|=.+.-|+-+-++|.|-- ---|..||.. ..++-|++|.+.-.+...+.+.....-++.++-
T Consensus 64 ~rlr~leeEqerL~ssLlaLsSHFAqVQfR-----irQ~vea~p~--er~~LLrdLedFAF~Gcpd~~~lq~~~s~~~~~ 136 (621)
T KOG3759|consen 64 LRLRQLEEEQERLNSSLLALSSHFAQVQFR-----IRQMVEADPS--ERLKLLRDLEDFAFKGCPDMNELQRLRSESESG 136 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHcCCHH--HHHHHHHHHHHHHhcCCCccccccccccccccc
Confidence 455555554455555555666677777742 2334445543 568889999999888877654211112222222
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc-cCCCC--CCCC-cccc---------cccCCCCCCCCCChH
Q 009038 230 REVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN-NNGGK--KGRS-LSKR---------KVNCSSQVAAAPSPD 296 (546)
Q Consensus 230 ~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n-~~leK--r~~~-~~~~---------~~~~~~~l~~~~sp~ 296 (546)
++ .|+++-.....=|..||++|++++..- .+.+. ++.- +.+. +..-++.|+ .++.+
T Consensus 137 ~~----------~lekq~e~qkeLi~QLk~Ql~dLE~~AYe~Geg~LPq~viLekQk~ilDeLr~Kl~lnl~i~-~lste 205 (621)
T KOG3759|consen 137 ND----------VLEKQNERQKELIKQLKEQLEDLERTAYENGEGELPQTVILEKQKAILDELREKLELNLDID-KLSTE 205 (621)
T ss_pred ch----------hhhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhhccCCcc-cccHH
Confidence 22 233332222222556666666654421 11110 0000 0000 001112233 45555
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHhcCCCHHHHHHhhcccCC
Q 009038 297 LFEVTMCQVKESSKSFTL------QLLSLMRAAHWDIAAAVRSIGAAAG 339 (546)
Q Consensus 297 lF~~~l~~A~~Sir~FaK------~Li~~Mr~agwDl~aAa~sI~~~vv 339 (546)
..- +++-.||.+|+- -|+.+++.-=-||..-++.|+..+.
T Consensus 206 elr---~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFInFlQ~e~~ 251 (621)
T KOG3759|consen 206 ELR---RQVDDALKQLVNPFKEKEQLVDQLKTQITDLERFINFLQDEVG 251 (621)
T ss_pred HHH---HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444 455666777764 4678888888889988888876554
No 93
>smart00338 BRLZ basic region leucin zipper.
Probab=23.46 E-value=2e+02 Score=23.15 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=20.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKL 261 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL 261 (546)
+.++...+..++....+|.+++.....++..|+..+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555544
No 94
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.06 E-value=2e+02 Score=23.29 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 234 APYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 234 ~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
......+.+|++++.....++..|+++++.+..
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334455667777777777777777777777733
No 95
>PRK04325 hypothetical protein; Provisional
Probab=22.80 E-value=2.2e+02 Score=24.21 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=31.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
+.++...+.=-|-++++|...+-...-+|..|+.+|..+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777888888888888888888888888877644
No 96
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.58 E-value=7.6e+02 Score=25.06 Aligned_cols=93 Identities=22% Similarity=0.201 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhh
Q 009038 150 ERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALV 229 (546)
Q Consensus 150 ~~~~~~ealia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~ 229 (546)
...+.+|+.|+++=..++.- ..++.++ -.+|-.||+.|-+-|+.=.+.... ...........+
T Consensus 103 rELa~Le~~l~~~~~~~~~~-----------~~~~~~~----~~lvk~e~EqLL~YK~~ql~~~~~--~~~~~~~~l~~v 165 (195)
T PF12761_consen 103 RELAELEEKLSKVEQAAESR-----------RSDTDSK----PALVKREFEQLLDYKERQLRELEE--GRSKSGKNLKSV 165 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----------ccCCcch----HHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCHHHH
Confidence 45677777777766555442 2333222 245677999998877766555432 111233456678
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Q 009038 230 REVAAPYEAAVAELKRELKAREVEVDNLKE 259 (546)
Q Consensus 230 ~s~i~tyE~~~~kLe~el~~KDseI~~Lk~ 259 (546)
+.=|++-|-.|.-||.=|+.|..|+..|++
T Consensus 166 ~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 166 REDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888899999999999999999888888763
No 97
>PRK00295 hypothetical protein; Provisional
Probab=22.56 E-value=2.3e+02 Score=23.71 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=30.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
+.++...+.--|-++.+|...+-....+|+.|+.+|..+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888888888888888888888877776644
No 98
>PRK04406 hypothetical protein; Provisional
Probab=22.38 E-value=2.2e+02 Score=24.32 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=31.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
+.++...+.=-|.++.+|...+-....+|+.|+.+|+.+..
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888888888888888888888888877744
No 99
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=22.36 E-value=3.2e+02 Score=27.40 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhhcC
Q 009038 167 SAMKRAYVSLQEAHC 181 (546)
Q Consensus 167 SslKaAY~qLQ~Ah~ 181 (546)
.+++.||++|+..+.
T Consensus 104 ~al~na~a~lehq~~ 118 (221)
T PF05700_consen 104 EALDNAYAQLEHQRL 118 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 378889999987654
No 100
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=22.34 E-value=4e+02 Score=33.84 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=22.8
Q ss_pred HHHHHhHHHHHHHHHHhhcC----CCCchhhhhhHHHH
Q 009038 162 VFDAVSAMKRAYVSLQEAHC----PWDPERMRVADVAV 195 (546)
Q Consensus 162 lFa~VSslKaAY~qLQ~Ah~----PyDpdkI~aAD~aV 195 (546)
+=+....+..+..+++.|-. ||+++....+..++
T Consensus 816 l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL 853 (1353)
T TIGR02680 816 AAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLAL 853 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHH
Confidence 33444455566666666544 99999999977666
No 101
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.15 E-value=7.9e+02 Score=27.49 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=30.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 229 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 229 ~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
.+..+..+.....+|+.+++..+.+|..|+.+|..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 334456666777889999999999999999999888763
No 102
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.98 E-value=1.4e+02 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=13.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh
Q 009038 241 AELKRELKAREVEVDNLKEKLKTVT 265 (546)
Q Consensus 241 ~kLe~el~~KDseI~~Lk~kL~e~~ 265 (546)
.+||.++...++.|..+|.+++++.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~ 27 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEIS 27 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555443
No 103
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.97 E-value=1.5e+02 Score=34.42 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=34.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 228 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 228 e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
.+.+..+.|+..+++|++|+..|++||..|+++-+++..
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778899999999999999999999999999988865
No 104
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=21.92 E-value=2.6e+02 Score=24.27 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=42.4
Q ss_pred hhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 009038 187 RMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPY-EAAVAELKRELKAREVEVDNLKEKLKTVT 265 (546)
Q Consensus 187 kI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~ty-E~~~~kLe~el~~KDseI~~Lk~kL~e~~ 265 (546)
..+-=+..-|..|+.+..|++. + . .+.+++..+... +.....|+.+....+.+|..|++.++.++
T Consensus 35 g~R~y~~~di~~l~~i~~lr~~--g--~----------~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 100 (103)
T cd01106 35 GYRLYTEEDLERLQQILFLKEL--G--F----------SLKEIKELLKDPSEDLLEALREQKELLEEKKERLDKLIKTID 100 (103)
T ss_pred CceeeCHHHHHHHHHHHHHHHc--C--C----------CHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555666666666542 0 0 244555555555 77778888888888888888888877665
Q ss_pred c
Q 009038 266 G 266 (546)
Q Consensus 266 ~ 266 (546)
.
T Consensus 101 ~ 101 (103)
T cd01106 101 R 101 (103)
T ss_pred H
Confidence 3
No 105
>PRK14164 heat shock protein GrpE; Provisional
Probab=21.86 E-value=89 Score=31.85 Aligned_cols=46 Identities=26% Similarity=0.639 Sum_probs=33.3
Q ss_pred CCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 494 RGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 494 rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
.|..|||..-|-|.....+ . ...|+=.+-+||++|+ .||+ ++|-++
T Consensus 169 ~Ge~FDP~~HEAV~~~~~~--~-~~~V~~V~qkGY~l~d-RVLRPA~V~Va 215 (218)
T PRK14164 169 EGDAFDPEIHEAVQDLSSG--D-EKVLGTVLRKGYRMGD-RVLRTAMVIIA 215 (218)
T ss_pred CCCCCChhHhheeeeecCC--C-CCEeeEEeeCCcEECC-EeccCceEEeC
Confidence 5999999999988753222 1 2356667899999998 6665 566654
No 106
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=21.79 E-value=6.3e+02 Score=23.18 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=35.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 009038 227 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 268 (546)
Q Consensus 227 ~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n 268 (546)
..+..-+.-|+..-.+.+.++..-..+|..||.+|.++....
T Consensus 70 ~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r 111 (139)
T PF05615_consen 70 EMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVR 111 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556788999999999999999999999999999886643
No 107
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.56 E-value=2.1e+02 Score=25.24 Aligned_cols=36 Identities=17% Similarity=0.410 Sum_probs=21.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009038 229 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTV 264 (546)
Q Consensus 229 ~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~ 264 (546)
+...+...+..+++|++++..+..++..|+..|+++
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555666666666666666666666666665543
No 108
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=21.55 E-value=5.4e+02 Score=27.98 Aligned_cols=75 Identities=16% Similarity=0.293 Sum_probs=42.7
Q ss_pred HHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhHHHHHHHH
Q 009038 164 DAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAEL 243 (546)
Q Consensus 164 a~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~tyE~~~~kL 243 (546)
..+..+..-|-+||..|.= ...-|+.++++.+.+... +..|+..++.....++++
T Consensus 4 eEW~eL~~efq~Lqethr~------------Y~qKleel~~lQ~~C~ss-------------I~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRS------------YKQKLEELSKLQDKCSSS-------------ISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHh
Confidence 4456777888888888753 455666666666666533 445555566666666666
Q ss_pred HHHHhhh-hHHHHHHHHHHHH
Q 009038 244 KRELKAR-EVEVDNLKEKLKT 263 (546)
Q Consensus 244 e~el~~K-DseI~~Lk~kL~e 263 (546)
+...... ...|+.|++++.+
T Consensus 59 ~~~~~~e~~~~i~~L~~~Ik~ 79 (330)
T PF07851_consen 59 KKSLSAEERELIEKLEEDIKE 79 (330)
T ss_pred ccCCChhHHHHHHHHHHHHHH
Confidence 4432222 2224444444443
No 109
>PRK14156 heat shock protein GrpE; Provisional
Probab=21.32 E-value=1.2e+02 Score=29.90 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=30.7
Q ss_pred cccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEe
Q 009038 497 EFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYL 542 (546)
Q Consensus 497 ~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyL 542 (546)
.|||.+.|-|.....+.......|.=.+-+|+++|+ .||+ ++|-+
T Consensus 130 ~FDP~~HEAv~~~~~~~~~~~gtVv~V~qkGY~l~d-RVLRpA~V~V 175 (177)
T PRK14156 130 SFDHNLHMAVQTLPADDEHPADSIAQVFQKGYKLHE-RLLRPAMVVV 175 (177)
T ss_pred CCChhHhhcceeecCCCCCCcCEEEEEeeCCcEeCC-EEeecceeEe
Confidence 899999999876332211234456677899999999 6665 55654
No 110
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=21.18 E-value=1.2e+02 Score=20.87 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=15.8
Q ss_pred HHhhhhHHHHHHHHHHHHHhc
Q 009038 246 ELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 246 el~~KDseI~~Lk~kL~e~~~ 266 (546)
|+..+...|..|+.+|.+|..
T Consensus 2 E~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECRR 22 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 466677778888888888764
No 111
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.09 E-value=2.3e+02 Score=23.52 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=27.4
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 229 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 229 ~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
++..++.....+.+++.++...+.+...|+.++..+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33445555666777888888888888888888877665
No 112
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=21.03 E-value=8.6e+02 Score=27.42 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=22.6
Q ss_pred HHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHH
Q 009038 160 NEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELR 200 (546)
Q Consensus 160 a~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~ 200 (546)
.+.=..+..-+.+-.++|..|-=.||++=..+=--+|+.|+
T Consensus 252 ~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le 292 (434)
T PRK15178 252 KSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFE 292 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHH
Confidence 33333444444555555666666666666666556666655
No 113
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=20.68 E-value=99 Score=31.93 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=34.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCC
Q 009038 227 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGG 272 (546)
Q Consensus 227 ~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~le 272 (546)
..||.+. ..-..+||.|++....+|..|+.+++.+...|.+|=
T Consensus 85 tsQRDRF---R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 85 TSQRDRF---RQRNAELEEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 455678999999999999999999999999985553
No 114
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.44 E-value=1.6e+02 Score=25.11 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=12.6
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009038 230 REVAAPYEAAVAELKRELKAREVEVDNLKEKL 261 (546)
Q Consensus 230 ~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL 261 (546)
...++..+..+++|++++..+..++..++.+|
T Consensus 68 ~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 68 EERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444443333333
No 115
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=20.35 E-value=2.4e+02 Score=23.95 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 233 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 233 i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
.-.+..++++|.+++...+..|..|+.+++.+...
T Consensus 28 el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~ 62 (74)
T PF12329_consen 28 ELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKE 62 (74)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888887766553
Done!