Query 009038
Match_columns 546
No_of_seqs 116 out of 134
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 17:25:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxa_A CGMP-dependent protein 93.5 0.084 2.9E-06 43.1 4.7 46 223-268 10-55 (67)
2 3nmd_A CGMP dependent protein 92.5 0.18 6.1E-06 41.7 5.3 34 233-266 35-68 (72)
3 1t6f_A Geminin; coiled-coil, c 69.4 5.6 0.00019 28.9 3.9 25 241-265 10-34 (37)
4 1m1j_C Fibrinogen gamma chain; 56.6 72 0.0025 33.7 11.3 39 229-267 96-134 (409)
5 1kd8_B GABH BLL, GCN4 acid bas 55.2 22 0.00076 25.8 4.9 34 232-265 2-35 (36)
6 1dkg_A Nucleotide exchange fac 53.9 12 0.0004 35.8 4.4 56 486-544 138-194 (197)
7 3nmd_A CGMP dependent protein 53.8 18 0.00062 29.9 4.9 36 233-268 21-56 (72)
8 3a7o_A Autophagy protein 16; c 53.0 17 0.00057 30.1 4.5 29 234-262 14-42 (75)
9 1kd8_A GABH AIV, GCN4 acid bas 52.2 24 0.00083 25.6 4.7 34 232-265 2-35 (36)
10 3ghg_C Fibrinogen gamma chain; 49.6 89 0.003 33.2 10.6 38 230-267 97-134 (411)
11 1j1d_C Troponin I, TNI; THIN f 48.9 1.1E+02 0.0038 27.8 9.7 75 190-266 26-107 (133)
12 3e21_A HFAF1, FAS-associated f 43.2 12 0.0004 28.2 2.0 20 317-336 25-44 (45)
13 3a6m_A Protein GRPE, HSP-70 co 42.9 25 0.00087 33.0 4.8 52 487-544 116-168 (177)
14 4abx_A DNA repair protein RECN 42.9 1.4E+02 0.0049 27.1 9.8 40 167-210 94-142 (175)
15 1j1e_C Troponin I, TNI; THIN f 40.2 1.4E+02 0.0048 28.4 9.3 75 190-266 26-107 (180)
16 4ani_A Protein GRPE; chaperone 39.3 22 0.00074 34.6 3.8 48 494-543 164-212 (213)
17 1t2k_D Cyclic-AMP-dependent tr 38.5 45 0.0015 25.8 4.8 32 233-264 24-55 (61)
18 2dgc_A Protein (GCN4); basic d 37.6 34 0.0012 27.0 4.0 34 229-262 28-61 (63)
19 3ajw_A Flagellar FLIJ protein; 37.4 1.5E+02 0.0052 25.5 8.7 76 194-269 37-112 (150)
20 2zqm_A Prefoldin beta subunit 34.3 64 0.0022 27.1 5.6 39 228-266 74-112 (117)
21 2dfs_A Myosin-5A; myosin-V, in 33.2 2.7E+02 0.0091 32.8 12.2 88 160-265 956-1043(1080)
22 1ytz_I Troponin I; muscle, THI 32.9 98 0.0034 29.5 7.0 73 190-265 24-103 (182)
23 4emc_A Monopolin complex subun 30.7 35 0.0012 32.8 3.6 25 243-267 32-56 (190)
24 2yy0_A C-MYC-binding protein; 30.2 60 0.002 25.0 4.2 28 240-267 21-48 (53)
25 1a31_A Protein (topoisomerase 29.9 53 0.0018 36.5 5.2 88 157-266 409-496 (591)
26 3iv1_A Tumor susceptibility ge 28.7 1.2E+02 0.004 25.4 6.0 35 234-268 42-76 (78)
27 1t2k_D Cyclic-AMP-dependent tr 28.7 96 0.0033 23.9 5.2 37 225-261 23-59 (61)
28 3m91_A Proteasome-associated A 28.4 1.2E+02 0.0042 23.3 5.6 38 228-265 13-50 (51)
29 1lwu_C Fibrinogen gamma chain; 28.3 64 0.0022 33.1 5.3 39 229-267 17-55 (323)
30 1m1j_C Fibrinogen gamma chain; 28.3 1.9E+02 0.0065 30.5 9.0 36 231-266 91-126 (409)
31 1l8d_A DNA double-strand break 28.1 2.6E+02 0.0089 23.2 11.6 39 228-266 61-99 (112)
32 1fxk_A Prefoldin; archaeal pro 28.0 71 0.0024 26.4 4.7 36 228-263 69-104 (107)
33 3m9b_A Proteasome-associated A 26.8 52 0.0018 32.9 4.2 40 227-266 57-96 (251)
34 1ci6_A Transcription factor AT 26.4 1.1E+02 0.0036 24.1 5.1 34 228-261 27-60 (63)
35 2wt7_A Proto-oncogene protein 26.3 1.6E+02 0.0054 22.9 6.1 32 233-264 25-56 (63)
36 1wlq_A Geminin; coiled-coil; 2 26.0 96 0.0033 26.2 5.0 33 234-266 32-66 (83)
37 1ytz_T Troponin T; muscle, THI 25.8 2.1E+02 0.0071 25.0 7.4 59 204-264 24-89 (107)
38 1wt6_A Myotonin-protein kinase 25.3 79 0.0027 26.6 4.4 30 229-258 43-72 (81)
39 1gd2_E Transcription factor PA 25.2 49 0.0017 26.9 3.1 36 233-268 31-66 (70)
40 3ghg_B Fibrinogen beta chain; 24.7 3E+02 0.01 29.6 9.8 90 150-266 95-191 (461)
41 1ykh_A RNA polymerase II media 24.5 93 0.0032 27.4 4.9 34 233-266 71-104 (108)
42 3efg_A Protein SLYX homolog; x 23.7 1.4E+02 0.0049 24.5 5.6 46 226-271 16-61 (78)
43 1fzc_C Fibrin; blood coagulati 23.1 70 0.0024 32.8 4.4 39 229-267 9-47 (319)
44 2wt7_A Proto-oncogene protein 23.1 1.4E+02 0.0047 23.3 5.2 38 225-262 24-61 (63)
45 1m1j_B Fibrinogen beta chain; 23.1 7.2E+02 0.025 26.7 13.5 27 152-178 109-135 (464)
46 3mq7_A Bone marrow stromal ant 22.8 1.1E+02 0.0038 27.4 5.1 37 230-266 70-106 (121)
47 1jnm_A Proto-oncogene C-JUN; B 22.1 1E+02 0.0035 23.9 4.2 33 232-264 23-55 (62)
48 2akf_A Coronin-1A; coiled coil 22.0 1.1E+02 0.0037 21.4 3.8 22 243-264 4-25 (32)
49 1jnm_A Proto-oncogene C-JUN; B 21.8 58 0.002 25.3 2.8 28 241-268 25-52 (62)
50 1fxk_C Protein (prefoldin); ar 21.7 1.6E+02 0.0053 25.5 5.9 44 225-268 2-45 (133)
51 4ghu_A TNF receptor-associated 21.5 1.2E+02 0.004 28.4 5.3 33 235-267 4-36 (198)
52 2avr_X Adhesion A; antiparalle 21.4 1.7E+02 0.006 26.1 6.1 102 160-268 5-111 (119)
53 1gd2_E Transcription factor PA 21.4 95 0.0032 25.2 4.0 40 225-264 30-69 (70)
54 1nkp_B MAX protein, MYC proto- 20.6 88 0.003 25.3 3.8 28 240-267 49-76 (83)
55 1ca9_A TRAF2, protein (TNF rec 20.3 85 0.0029 28.6 4.0 36 232-267 4-39 (192)
56 1g6u_A Domain swapped dimer; d 20.1 1.2E+02 0.0042 22.6 4.0 22 243-264 25-46 (48)
No 1
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=93.52 E-value=0.084 Score=43.11 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=35.2
Q ss_pred CCchhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 009038 223 VSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 268 (546)
Q Consensus 223 ~a~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n 268 (546)
....++++..|+..+..+.+||.+++.||.+|.+|+.+|+...+-.
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456789999999999999999999999999999999999887754
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=92.48 E-value=0.18 Score=41.75 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 233 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 233 i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
|+..+..+++|+++|..||++|..|+.+|+...+
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4778889999999999999999999999998754
No 3
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=69.36 E-value=5.6 Score=28.90 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh
Q 009038 241 AELKRELKAREVEVDNLKEKLKTVT 265 (546)
Q Consensus 241 ~kLe~el~~KDseI~~Lk~kL~e~~ 265 (546)
++|.+++.+||.+|..||++=.++.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5799999999999999999876664
No 4
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=56.59 E-value=72 Score=33.72 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=32.6
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 229 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 229 ~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
+..++...+..++.|+..+...+..|..|++++.++...
T Consensus 96 ~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 96 YENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344677888889999999999999999999999888764
No 5
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=55.25 E-value=22 Score=25.76 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 009038 232 VAAPYEAAVAELKRELKAREVEVDNLKEKLKTVT 265 (546)
Q Consensus 232 ~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~ 265 (546)
+|.-.|.-|++|-.+...++.|+.+||+.|.++.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 3667888999999999999999999999998875
No 6
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=53.92 E-value=12 Score=35.80 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=38.6
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEeec
Q 009038 486 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 544 (546)
Q Consensus 486 ~a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs~ 544 (546)
.+..+.. .|..|||.+.|-|.....+..+ ...|.-.+-+||++++ .||+ ++|-++.
T Consensus 138 Gv~~i~~-~G~~FDP~~HeAv~~~~~~~~~-~~tVv~v~qkGY~l~d-RvLRpA~V~V~~ 194 (197)
T 1dkg_A 138 GVEVIAE-TNVPLDPNVHQAIAMVESDDVA-PGNVLGIMQKGYTLNG-RTIRAAMVTVAK 194 (197)
T ss_dssp TEEEECC-CSSBCCTTSEEEEEEEECSSSC-TTBEEEEEECEEEETT-EEEECEEEEEEE
T ss_pred CCEEeCC-CCCCCCHHHhheeeeecCCCCC-cCeEEEEeeCCeeeCC-EEecceEEEecC
Confidence 3444443 5999999999988753222223 3457778999999998 7776 5776653
No 7
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.81 E-value=18 Score=29.85 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 009038 233 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 268 (546)
Q Consensus 233 i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n 268 (546)
|..++.++++-..||++||.-|..|...|++.+...
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888888888888888888888887765543
No 8
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=53.04 E-value=17 Score=30.13 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009038 234 APYEAAVAELKRELKAREVEVDNLKEKLK 262 (546)
Q Consensus 234 ~tyE~~~~kLe~el~~KDseI~~Lk~kL~ 262 (546)
.+.+.++..|++++..||.||..|++-+.
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555888899999999999999998774
No 9
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=52.19 E-value=24 Score=25.58 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 009038 232 VAAPYEAAVAELKRELKAREVEVDNLKEKLKTVT 265 (546)
Q Consensus 232 ~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~ 265 (546)
.|.-.|.-|++|-.+...++.|+.+||+-|.++.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 3667888999999999999999999999998875
No 10
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=49.59 E-value=89 Score=33.19 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=32.5
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 230 REVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 230 ~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
+.+|...+..+..|++.+...++.|..|++++.++...
T Consensus 97 ~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 97 EASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888999999999999999999999988764
No 11
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=48.88 E-value=1.1e+02 Score=27.75 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhHHHHHHHHHH-------HHhhhhHHHHHHHHHHH
Q 009038 190 VADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKR-------ELKAREVEVDNLKEKLK 262 (546)
Q Consensus 190 aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~tyE~~~~kLe~-------el~~KDseI~~Lk~kL~ 262 (546)
.|=+.+-.|-....+=|+.|......|-. +.....++++.+.+.|+..+..|+. .++..|-||..|+.++.
T Consensus 26 kA~e~l~kE~e~k~eeKkkiLaER~~pL~--id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~ 103 (133)
T 1j1d_C 26 IAKQELEREAEERRGEKGRALSTRAQPLE--LAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIF 103 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHH
Confidence 34455667778888889999877664432 2233467799999998887776655 46777889999999998
Q ss_pred HHhc
Q 009038 263 TVTG 266 (546)
Q Consensus 263 e~~~ 266 (546)
++..
T Consensus 104 Dl~g 107 (133)
T 1j1d_C 104 DLRG 107 (133)
T ss_dssp HHC-
T ss_pred HHHc
Confidence 8865
No 12
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=43.17 E-value=12 Score=28.17 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=15.1
Q ss_pred HHHHHhcCCCHHHHHHhhcc
Q 009038 317 LSLMRAAHWDIAAAVRSIGA 336 (546)
Q Consensus 317 i~~Mr~agwDl~aAa~sI~~ 336 (546)
+..+++++|||.+|++..-|
T Consensus 25 ~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 25 ITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp HHHHHHTTTCHHHHHTTC--
T ss_pred HHHHHHcCCcHHHHHHHHcC
Confidence 35678999999999986543
No 13
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=42.92 E-value=25 Score=33.03 Aligned_cols=52 Identities=29% Similarity=0.547 Sum_probs=37.3
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEeec
Q 009038 487 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 544 (546)
Q Consensus 487 a~IF~V~rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs~ 544 (546)
+..+.. .|..|||.+.|-|..... ....|.-.+-+||++++ .||+ ++|-++.
T Consensus 116 v~~i~~-~Ge~FDP~~HeAv~~~~~----~~gtVv~v~qkGY~l~d-RvLRpA~V~V~~ 168 (177)
T 3a6m_A 116 VEEVPG-EGEAFDPRYHEAVGLLPG----EPGKVAKVFQRGFRMGE-ALVRPARVAVGE 168 (177)
T ss_dssp CEECCC-TTSBCCTTTEEEEEEEES----STTBEEEEEECCEEETT-EEEECEEEEEEE
T ss_pred CEEeCC-CCCCCCHHHhhhhhcccC----CcCeEEEEeecCeeeCC-EEecCeEEEEeC
Confidence 344443 599999999999875322 23467788999999998 7776 6776653
No 14
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=42.85 E-value=1.4e+02 Score=27.10 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHh---------hcCCCCchhhhhhHHHHHHHHHhhhHhHHHHh
Q 009038 167 SAMKRAYVSLQE---------AHCPWDPERMRVADVAVVGELRKIGVLRERLK 210 (546)
Q Consensus 167 SslKaAY~qLQ~---------Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~ 210 (546)
..|..||++|+. ....|||+.+.. |-.-|..|..|+|.|.
T Consensus 94 e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~----ie~RL~~l~~L~RKyg 142 (175)
T 4abx_A 94 NELRAALESVQAIAGELRDVAEGSAADPEALDR----VEARLSALSKLKNKYG 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHH----HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH----HHHHHHHHHHHHHHcC
Confidence 335555555554 356788877654 4455666666677775
No 15
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=40.23 E-value=1.4e+02 Score=28.44 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhHHHHHHHHHHH-------HhhhhHHHHHHHHHHH
Q 009038 190 VADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRE-------LKAREVEVDNLKEKLK 262 (546)
Q Consensus 190 aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~tyE~~~~kLe~e-------l~~KDseI~~Lk~kL~ 262 (546)
.|=.-+-.|-....+-|+.|......|-. +.....+++|.+.+.|+..+..|+.+ ++..|-||..|+.++.
T Consensus 26 kA~e~L~~E~e~k~eEKkkiLaER~kPLn--id~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~ 103 (180)
T 1j1e_C 26 IAKQELEREAEERRGEKGRALSTRAQPLE--LAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIF 103 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCC--GGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 34455667778888889999877664432 22235667899999988887776655 6677889999999998
Q ss_pred HHhc
Q 009038 263 TVTG 266 (546)
Q Consensus 263 e~~~ 266 (546)
++..
T Consensus 104 DLrG 107 (180)
T 1j1e_C 104 DLRG 107 (180)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 8865
No 16
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=39.32 E-value=22 Score=34.62 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=34.4
Q ss_pred CCCcccccccccccccCCCCCCCCCeEEEEeeCCeeeCCccEEE-EEEEee
Q 009038 494 RGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 543 (546)
Q Consensus 494 rG~~F~~~YMEsV~~~~~~~~~~~~~VgftV~PGFkVg~~tVik-crVyLs 543 (546)
.|..|||.+.|-|.....+.. ....|.-.+-+||++++ .||+ ++|-++
T Consensus 164 ~Ge~FDP~~HeAv~~v~~~~~-~~gtVv~V~qkGY~l~d-RVLRpA~V~Va 212 (213)
T 4ani_A 164 VGKPFDPYLHQAVMQAEAEGY-EPNTVVEELQKGYKLKD-RVLRPAMVKVS 212 (213)
T ss_dssp SSSCCCTTTEEEEEEECCSSS-CSSSEEEEEECCCEETT-SCCSCEEEEEE
T ss_pred CCCCCCHHHceeeeeecCCCC-CCCcEEEEEeCCeEECC-EEeeceEEEeC
Confidence 499999999999876332222 34457778999999998 6664 666543
No 17
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.49 E-value=45 Score=25.80 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009038 233 AAPYEAAVAELKRELKAREVEVDNLKEKLKTV 264 (546)
Q Consensus 233 i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~ 264 (546)
+...|.-++.|+.+...+.++|..|+.++..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555444
No 18
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=37.62 E-value=34 Score=27.05 Aligned_cols=34 Identities=26% Similarity=0.145 Sum_probs=24.7
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009038 229 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLK 262 (546)
Q Consensus 229 ~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~ 262 (546)
-+..+...|..+..|+.+...+..+|..|++.|.
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677788888888888888888888887764
No 19
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=37.41 E-value=1.5e+02 Score=25.50 Aligned_cols=76 Identities=8% Similarity=-0.034 Sum_probs=49.5
Q ss_pred HHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccc
Q 009038 194 AVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNN 269 (546)
Q Consensus 194 aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~ 269 (546)
..-..|..|...+..|...-.......+..+.....+.-|...+.++...+.++...+.++...++.|.++...-+
T Consensus 37 ~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 112 (150)
T 3ajw_A 37 QAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQ 112 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888865443322222223344566677777777777777888888888888887777665443
No 20
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.33 E-value=64 Score=27.06 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=31.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 228 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 228 e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
.+...+...+..+++|++++..+..++..|+.+|.+.-.
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467777778888888888888888888888888887764
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.17 E-value=2.7e+02 Score=32.82 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=48.3
Q ss_pred HHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhHHHH
Q 009038 160 NEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAA 239 (546)
Q Consensus 160 a~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~tyE~~ 239 (546)
.++-+.++.||..-.+|+.. ...+..++.-|-+--+.+.+|++.+.+.. .|...+-..++.+
T Consensus 956 ~~~~~e~~~L~~~l~~le~~-----~~e~~~~~~~v~~L~~e~~~l~~~~~~~~-------------ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMS-----EEEAKNATNRVLSLQEEIAKLRKELHQTQ-------------TEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
Confidence 34445566666555555554 23444555555444456677776666431 2233333333444
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Q 009038 240 VAELKRELKAREVEVDNLKEKLKTVT 265 (546)
Q Consensus 240 ~~kLe~el~~KDseI~~Lk~kL~e~~ 265 (546)
-.+|+.++.....+...|++++++++
T Consensus 1018 ~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1018 KHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666677777666665
No 22
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=32.87 E-value=98 Score=29.54 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhHHHHHHHHHHH-------HhhhhHHHHHHHHHHH
Q 009038 190 VADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRE-------LKAREVEVDNLKEKLK 262 (546)
Q Consensus 190 aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~tyE~~~~kLe~e-------l~~KDseI~~Lk~kL~ 262 (546)
-|=.-+-.|-....+-|+.|......|-. +.. ..+++|.+.+.|...+..|+.+ ++..+-||..|+.++.
T Consensus 24 kA~e~L~~E~e~k~eeKkkiLaER~kPLn--id~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVn 100 (182)
T 1ytz_I 24 LAVTEIEKEAAAKEVEKQNYLAEHSPPLS--LPG-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLF 100 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCC--CCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHH
Confidence 34455667888888999999987664433 223 5678999999998888877766 4555556666665555
Q ss_pred HHh
Q 009038 263 TVT 265 (546)
Q Consensus 263 e~~ 265 (546)
++.
T Consensus 101 DLr 103 (182)
T 1ytz_I 101 DLR 103 (182)
T ss_dssp GGT
T ss_pred HHH
Confidence 543
No 23
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=30.74 E-value=35 Score=32.84 Aligned_cols=25 Identities=16% Similarity=0.476 Sum_probs=21.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 243 LKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 243 Le~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
|..+++.|+.||..|+++|+.+...
T Consensus 32 L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 32 LSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4448889999999999999988764
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=30.24 E-value=60 Score=24.99 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 240 VAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 240 ~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
+..|+.|+.....++..|+++++++.+.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777654
No 25
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=29.91 E-value=53 Score=36.46 Aligned_cols=88 Identities=16% Similarity=0.232 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCCCCchhhhhhhhhhH
Q 009038 157 TVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPY 236 (546)
Q Consensus 157 alia~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~ty 236 (546)
.|=+++|-|-.|-..+-.+|... |...+.+..+-..+..=.+..|.| -.+||++-+++
T Consensus 409 glTAKdFRTwnASvta~~~L~~~--~~~~~s~~ek~~~yn~Anr~VAiL--------------------CNHqR~vpK~~ 466 (591)
T 1a31_A 409 GLTAKVFRTYNASITLQQQLKEL--TAPDENIPAKILSYNRANRAVAIL--------------------CNHQRAPPKTF 466 (591)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHC----------------------------------
T ss_pred CCceeeeccCchHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHH--------------------hCCCCCCCCCH
Confidence 45566777766666666666443 332223333333333333333221 25688899999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 237 EAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 237 E~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
+..+++|+.+++.+..+|..|+..|.++..
T Consensus 467 ~~~m~kl~~ki~~~~~~~~~~~~~l~~~~~ 496 (591)
T 1a31_A 467 EKSMMNLQTKIDAKKEQLADARRDLKSAKA 496 (591)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999987654
No 26
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.72 E-value=1.2e+02 Score=25.38 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 009038 234 APYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 268 (546)
Q Consensus 234 ~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n 268 (546)
.-.+.++.+|+.|-...+..|.-|+.+..|+....
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999987643
No 27
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.70 E-value=96 Score=23.89 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=30.9
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009038 225 GGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKL 261 (546)
Q Consensus 225 ~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL 261 (546)
.+.+++..+..++..-..|++++.....|+..|+..|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888889999999999998888775
No 28
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.36 E-value=1.2e+02 Score=23.27 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=31.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 009038 228 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVT 265 (546)
Q Consensus 228 e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~ 265 (546)
+++..+......-.+|...++.-..+|..|+++|+.+.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666667777778889999999999999999998764
No 29
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.32 E-value=64 Score=33.12 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=29.0
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 229 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 229 ~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
+..+|...+..++.|+..++..++.|..|+++|.++...
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777888888888888888888888777653
No 30
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.28 E-value=1.9e+02 Score=30.55 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=19.1
Q ss_pred hhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 231 EVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 231 s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
+.+..||+++..-+.+++.+...+..++.+|+.+..
T Consensus 91 ~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~ 126 (409)
T 1m1j_C 91 EEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQ 126 (409)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334445555555555555555555555555555543
No 31
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.09 E-value=2.6e+02 Score=23.25 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=25.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 228 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 228 e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
....++..++..+++|+.++.....++..|+.++..+..
T Consensus 61 ~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 61 HREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777777777666665544
No 32
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.97 E-value=71 Score=26.40 Aligned_cols=36 Identities=6% Similarity=0.127 Sum_probs=23.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009038 228 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKT 263 (546)
Q Consensus 228 e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e 263 (546)
.+...+...+..+++|++++..++.++..|+.+|.+
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666777777666666666666654
No 33
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.84 E-value=52 Score=32.87 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=34.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 227 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 227 ~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
.+++..+...++..++|..+++....||..||++|+.+.+
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3667777788888888999999999999999999998865
No 34
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.40 E-value=1.1e+02 Score=24.06 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=16.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009038 228 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKL 261 (546)
Q Consensus 228 e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL 261 (546)
++...++..+.--.+|+.++.....|+..||.-|
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555555554444
No 35
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.29 E-value=1.6e+02 Score=22.94 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009038 233 AAPYEAAVAELKRELKAREVEVDNLKEKLKTV 264 (546)
Q Consensus 233 i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~ 264 (546)
+...+.-+..|+.+-..+..+|..|+.++..+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555444
No 36
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.98 E-value=96 Score=26.23 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=24.9
Q ss_pred hhHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 234 APYEAAV--AELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 234 ~tyE~~~--~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
+-|+++. ++|..++..|+.+|..||+.+.++..
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 67889999999999999998876643
No 37
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=25.77 E-value=2.1e+02 Score=24.98 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=41.4
Q ss_pred HhHHHHhhccCCCCCccCCCCchhhhhhhhhhHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHH
Q 009038 204 VLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRE-------LKAREVEVDNLKEKLKTV 264 (546)
Q Consensus 204 eLK~~y~~~~~~~~~~~~~~a~~~e~~s~i~tyE~~~~kLe~e-------l~~KDseI~~Lk~kL~e~ 264 (546)
+-|+.|......|-. +.....++++.+.+.|...+.+|++| ++..|-||..|+.++.++
T Consensus 24 EeKkkiLaER~~pL~--id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 24 ETKKKVLAERRKPLN--IDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHTCCCCC--CSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 357777766553322 22224557888888888877776655 677788999999998888
No 38
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=25.26 E-value=79 Score=26.64 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=19.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhHHHHHHH
Q 009038 229 VREVAAPYEAAVAELKRELKAREVEVDNLK 258 (546)
Q Consensus 229 ~~s~i~tyE~~~~kLe~el~~KDseI~~Lk 258 (546)
.++.++.+|..-++|+.+++.++.++..|+
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777666666655544
No 39
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.22 E-value=49 Score=26.89 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 009038 233 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 268 (546)
Q Consensus 233 i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n 268 (546)
|+..|..+..|+........|...|+..+..+...+
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555566666666666655443
No 40
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.67 E-value=3e+02 Score=29.64 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHH-------HHHHHhHHHHHHHHHHhhcCCCCchhhhhhHHHHHHHHHhhhHhHHHHhhccCCCCCccCC
Q 009038 150 ERVMELETVMNE-------VFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGG 222 (546)
Q Consensus 150 ~~~~~~ealia~-------lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~aVVsEL~~LseLK~~y~~~~~~~~~~~~~ 222 (546)
..++.|+..|.+ .|.-|.+||..|.+-|.- +... ..|+.+-++.-|-.+.|-+.
T Consensus 95 ~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~--------~~~n-~~~~~~s~~mle~~~~~~~~---------- 155 (461)
T 3ghg_B 95 NSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQ--------VKDN-ENVVNEYSSELEKHQLYIDE---------- 155 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH--------HHHH-HHTTSCHHHHHHHHHTHHHH----------
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCC--------CCcc-hhHHHHHHHHHHHHHHHHHh----------
Confidence 345555555554 588899999999988832 2222 44555555555555555432
Q ss_pred CCchhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 223 VSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 223 ~a~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
-++-+.+..++.|+..+....+.|..|+..+.....
T Consensus 156 --------~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~ 191 (461)
T 3ghg_B 156 --------TVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQME 191 (461)
T ss_dssp --------HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 135567777777888888888888888877765543
No 41
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=24.50 E-value=93 Score=27.36 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 233 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 233 i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
...+|.+..-||.|++.|..+|..+++..++++.
T Consensus 71 hQARetL~~~le~Qi~~kr~e~~~i~~~~~~~~~ 104 (108)
T 1ykh_A 71 HQSRESLIMLLEEQLEYKRGEIREIEQVCKQVHD 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999988865
No 42
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.75 E-value=1.4e+02 Score=24.46 Aligned_cols=46 Identities=13% Similarity=-0.004 Sum_probs=36.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCC
Q 009038 226 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNG 271 (546)
Q Consensus 226 ~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n~~l 271 (546)
+.++...++=-|.++++|...+-....+|+.|+.+|+.+..+-..+
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467778888899999999999999999999999999887754333
No 43
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=23.14 E-value=70 Score=32.76 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=31.7
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 229 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 229 ~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
+...|..++..++.|+..++..+.+|..|++++.+++..
T Consensus 9 lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 9 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp -CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788889999999999999999999998888664
No 44
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=23.08 E-value=1.4e+02 Score=23.26 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=30.4
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009038 225 GGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLK 262 (546)
Q Consensus 225 ~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~ 262 (546)
++.+++..+..++..-..|++++.....++..|+.-|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888888888888888887764
No 45
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.06 E-value=7.2e+02 Score=26.66 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 009038 152 VMELETVMNEVFDAVSAMKRAYVSLQE 178 (546)
Q Consensus 152 ~~~~ealia~lFa~VSslKaAY~qLQ~ 178 (546)
+..++......|.-|-.|+..|.+.|.
T Consensus 109 l~~lsn~Ts~~~~~i~~Iq~slk~~Q~ 135 (464)
T 1m1j_B 109 VAKFSDTSTTMYQYVNMIDNKLVKTQK 135 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhcccc
Confidence 344444555667777778899998886
No 46
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.85 E-value=1.1e+02 Score=27.40 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 009038 230 REVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 266 (546)
Q Consensus 230 ~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~ 266 (546)
+..++..+.-++.|..+|+.+..++++||.+...+..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3345555555556666666666666666666655544
No 47
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.09 E-value=1e+02 Score=23.88 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009038 232 VAAPYEAAVAELKRELKAREVEVDNLKEKLKTV 264 (546)
Q Consensus 232 ~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~ 264 (546)
.+...|.-+..|+++...+..+|..|+.++..+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554433
No 48
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.02 E-value=1.1e+02 Score=21.42 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=10.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH
Q 009038 243 LKRELKAREVEVDNLKEKLKTV 264 (546)
Q Consensus 243 Le~el~~KDseI~~Lk~kL~e~ 264 (546)
||.++++...-+..|.+.++.+
T Consensus 4 lee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 49
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.81 E-value=58 Score=25.29 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=13.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 009038 241 AELKRELKAREVEVDNLKEKLKTVTGLN 268 (546)
Q Consensus 241 ~kLe~el~~KDseI~~Lk~kL~e~~~~n 268 (546)
..|+.++.....+-..|+.++..+...+
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544444433
No 50
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.71 E-value=1.6e+02 Score=25.49 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=37.6
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 009038 225 GGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 268 (546)
Q Consensus 225 ~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n 268 (546)
+.+.++..+..|+..++.|+.++......|..+++-++.+....
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46778888999999999999999999999999888888877654
No 51
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=21.50 E-value=1.2e+02 Score=28.36 Aligned_cols=33 Identities=6% Similarity=0.248 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 235 PYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 235 tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
+.|..+++|+.+|..+|.+|..|+++|++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 36 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLETA 36 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 446678899999999999999999999999874
No 52
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=21.42 E-value=1.7e+02 Score=26.12 Aligned_cols=102 Identities=21% Similarity=0.314 Sum_probs=58.6
Q ss_pred HHHHHHHhHHHHHHHHHHhh-cCCCCchhhhhhHHHHHHHHHhhhHhHHH----HhhccCCCCCccCCCCchhhhhhhhh
Q 009038 160 NEVFDAVSAMKRAYVSLQEA-HCPWDPERMRVADVAVVGELRKIGVLRER----LKRRSFGGGRRCGGVSGGALVREVAA 234 (546)
Q Consensus 160 a~lFa~VSslKaAY~qLQ~A-h~PyDpdkI~aAD~aVVsEL~~LseLK~~----y~~~~~~~~~~~~~~a~~~e~~s~i~ 234 (546)
+.|..++.+|.+-|=+|..- --=|..++ +.|+.| +.+|....+|+.. +.+-......+ ---.+-..+++
T Consensus 5 ~~V~s~l~~LEaeyq~L~~kE~qrynqek-a~AE~A-~~~L~~~~~m~~~i~ek~~~i~~~~~~~----~yK~eY~~L~K 78 (119)
T 2avr_X 5 ASLVGELQALDAEYQNLANQEEARFNEER-AQADAA-RQALAQNEQVYNELSQRAQRLQAEANTR----FYKSQYQELAS 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTSC----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccc----HHHHHHHHHHH
Confidence 56778888888888888531 00144443 334443 3345444444332 22221111111 12356788899
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 009038 235 PYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 268 (546)
Q Consensus 235 tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~n 268 (546)
.|....++|+++++.+..-|++- ++|.....+|
T Consensus 79 kYk~~~~~Ld~eI~~qe~iI~nF-e~Iq~~~~~~ 111 (119)
T 2avr_X 79 KYEDALKKLEAEMEQQKAVISDF-EKIQALRAGN 111 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHccc
Confidence 99999999999998887766654 4455555554
No 53
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.40 E-value=95 Score=25.21 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=27.9
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009038 225 GGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTV 264 (546)
Q Consensus 225 ~~~e~~s~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~ 264 (546)
.+.++...+..++.....|..+...+..+|..|..+|..+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455666677777777777777777777777777777653
No 54
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.56 E-value=88 Score=25.30 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 240 VAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 240 ~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
++.|+.+++....++..|+++...+...
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 55
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=20.26 E-value=85 Score=28.63 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=30.5
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 009038 232 VAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 267 (546)
Q Consensus 232 ~i~tyE~~~~kLe~el~~KDseI~~Lk~kL~e~~~~ 267 (546)
.+...+.+++.|+..+..++.+|..|+++|++++..
T Consensus 4 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (192)
T 1ca9_A 4 KIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEAS 39 (192)
T ss_dssp TTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456667778889999999999999999999998753
No 56
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.09 E-value=1.2e+02 Score=22.56 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=15.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH
Q 009038 243 LKRELKAREVEVDNLKEKLKTV 264 (546)
Q Consensus 243 Le~el~~KDseI~~Lk~kL~e~ 264 (546)
||+|+++.+..+..||.+|+.+
T Consensus 25 leselqalekklaalksklqal 46 (48)
T 1g6u_A 25 LESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6666777777777777777654
Done!