Query 009041
Match_columns 546
No_of_seqs 179 out of 1516
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 19:41:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03065 isocitrate dehydrogen 100.0 8E-122 2E-126 976.7 43.1 468 20-489 13-481 (483)
2 PTZ00435 isocitrate dehydrogen 100.0 2E-108 3E-113 865.4 41.3 407 80-486 4-411 (413)
3 TIGR00127 nadp_idh_euk isocitr 100.0 4E-108 9E-113 861.3 40.4 407 80-486 1-408 (409)
4 PRK08299 isocitrate dehydrogen 100.0 1E-106 2E-111 850.2 40.5 400 80-485 2-402 (402)
5 PLN00096 isocitrate dehydrogen 100.0 2E-106 4E-111 840.7 34.0 379 89-481 2-393 (393)
6 KOG1526 NADP-dependent isocitr 100.0 2E-105 5E-110 801.7 28.3 408 78-486 11-418 (422)
7 COG0473 LeuB Isocitrate/isopro 100.0 2E-104 5E-109 811.5 32.5 337 84-483 2-347 (348)
8 PRK09222 isocitrate dehydrogen 100.0 6E-101 1E-105 820.6 36.6 379 85-539 4-390 (482)
9 PLN00118 isocitrate dehydrogen 100.0 8E-101 2E-105 800.3 35.5 326 86-481 42-372 (372)
10 PRK08997 isocitrate dehydrogen 100.0 1E-100 3E-105 790.8 36.0 329 84-481 1-334 (334)
11 TIGR02924 ICDH_alpha isocitrat 100.0 1E-100 3E-105 815.9 35.5 376 87-537 2-384 (473)
12 PLN00103 isocitrate dehydrogen 100.0 7E-100 1E-104 800.2 40.0 380 79-484 3-409 (410)
13 PRK14025 multifunctional 3-iso 100.0 9E-100 2E-104 783.3 35.0 321 86-481 2-330 (330)
14 PRK08194 tartrate dehydrogenas 100.0 4.7E-99 1E-103 784.2 35.5 336 86-483 4-351 (352)
15 TIGR02089 TTC tartrate dehydro 100.0 2.6E-98 6E-103 779.1 34.9 335 86-481 4-352 (352)
16 PLN02329 3-isopropylmalate deh 100.0 2.3E-98 5E-103 788.4 34.0 345 84-487 45-407 (409)
17 PRK06451 isocitrate dehydrogen 100.0 7.6E-98 2E-102 786.9 35.8 353 88-481 26-408 (412)
18 TIGR00175 mito_nad_idh isocitr 100.0 1.7E-97 4E-102 768.7 35.0 324 86-481 4-333 (333)
19 PLN00123 isocitrate dehydrogen 100.0 2.2E-97 5E-102 771.0 35.0 322 85-482 30-360 (360)
20 PRK07006 isocitrate dehydrogen 100.0 2.1E-97 5E-102 784.1 35.1 358 88-481 22-409 (409)
21 TIGR00183 prok_nadp_idh isocit 100.0 5.9E-97 1E-101 783.0 35.3 358 88-481 29-416 (416)
22 PRK00772 3-isopropylmalate deh 100.0 7.2E-97 2E-101 769.3 35.3 338 85-483 2-357 (358)
23 TIGR00169 leuB 3-isopropylmala 100.0 8E-97 2E-101 767.1 34.9 334 87-481 1-349 (349)
24 PRK03437 3-isopropylmalate deh 100.0 3.1E-96 7E-101 761.1 34.3 329 86-481 5-344 (344)
25 TIGR02088 LEU3_arch isopropylm 100.0 7.1E-96 2E-100 753.1 34.4 318 88-478 1-322 (322)
26 KOG0785 Isocitrate dehydrogena 100.0 2.3E-96 5E-101 738.1 22.5 325 86-481 36-365 (365)
27 PRK07362 isocitrate dehydrogen 100.0 1E-93 2.2E-98 756.5 33.8 358 88-480 31-473 (474)
28 PF00180 Iso_dh: Isocitrate/is 100.0 6.6E-93 1.4E-97 739.3 26.4 332 87-477 1-348 (348)
29 COG0538 Icd Isocitrate dehydro 100.0 3E-89 6.6E-94 703.1 31.7 363 88-482 21-407 (407)
30 KOG0784 Isocitrate dehydrogena 100.0 5.4E-84 1.2E-88 655.5 25.4 332 80-482 37-373 (375)
31 KOG0786 3-isopropylmalate dehy 100.0 6.3E-76 1.4E-80 578.4 22.2 337 84-484 3-361 (363)
32 PF03971 IDH: Monomeric isocit 97.4 0.0059 1.3E-07 68.3 17.5 187 252-448 448-641 (735)
33 TIGR00178 monomer_idh isocitra 97.2 0.009 2E-07 66.9 15.5 183 253-448 453-645 (741)
34 COG2838 Icd Monomeric isocitra 95.7 0.28 6.1E-06 54.4 14.9 182 254-448 456-647 (744)
35 TIGR00127 nadp_idh_euk isocitr 90.5 0.13 2.8E-06 56.1 1.7 21 203-223 140-161 (409)
36 PF04166 PdxA: Pyridoxal phosp 87.9 0.35 7.6E-06 50.8 2.6 27 382-414 269-295 (298)
37 PLN00103 isocitrate dehydrogen 87.3 0.38 8.2E-06 52.6 2.5 40 201-240 125-164 (410)
38 PRK03371 pdxA 4-hydroxythreoni 86.0 0.53 1.1E-05 50.1 2.7 138 260-416 177-322 (326)
39 PRK01909 pdxA 4-hydroxythreoni 84.7 0.65 1.4E-05 49.5 2.6 140 260-418 173-321 (329)
40 PRK05312 pdxA 4-hydroxythreoni 83.9 0.73 1.6E-05 49.2 2.6 140 260-418 182-330 (336)
41 TIGR00557 pdxA 4-hydroxythreon 83.6 0.78 1.7E-05 48.7 2.6 137 260-415 170-315 (320)
42 PRK00232 pdxA 4-hydroxythreoni 83.4 1.1 2.4E-05 47.8 3.7 139 260-417 178-324 (332)
43 COG1995 PdxA Pyridoxal phospha 82.6 1.2 2.6E-05 47.4 3.5 46 365-416 277-322 (332)
44 PRK03743 pdxA 4-hydroxythreoni 82.4 1.3 2.8E-05 47.3 3.7 140 260-418 178-325 (332)
45 PRK02746 pdxA 4-hydroxythreoni 81.4 1.4 3.1E-05 47.2 3.7 143 260-417 180-337 (345)
46 PRK03946 pdxA 4-hydroxythreoni 79.7 1.3 2.9E-05 46.7 2.7 48 365-417 254-301 (307)
47 TIGR00178 monomer_idh isocitra 66.5 20 0.00043 41.3 7.8 116 212-329 177-299 (741)
48 PLN03065 isocitrate dehydrogen 63.4 7.3 0.00016 43.7 3.8 13 203-215 211-233 (483)
49 PTZ00435 isocitrate dehydrogen 60.5 4.7 0.0001 44.3 1.7 18 203-220 143-161 (413)
50 PF03971 IDH: Monomeric isocit 58.2 11 0.00024 43.3 4.0 117 210-328 171-294 (735)
51 COG0655 WrbA Multimeric flavod 37.8 1.7E+02 0.0038 28.5 8.4 76 94-183 13-100 (207)
52 PF03358 FMN_red: NADPH-depend 36.8 1.3E+02 0.0029 27.2 7.0 82 87-184 2-96 (152)
53 PRK10569 NAD(P)H-dependent FMN 36.7 1.4E+02 0.003 29.2 7.5 84 87-184 2-92 (191)
54 TIGR03566 FMN_reduc_MsuE FMN r 32.0 2.5E+02 0.0054 26.5 8.2 82 87-184 1-94 (174)
55 TIGR03567 FMN_reduc_SsuE FMN r 31.9 2.3E+02 0.0049 26.8 7.9 83 88-184 2-91 (171)
56 COG2838 Icd Monomeric isocitra 28.2 74 0.0016 36.2 4.4 114 214-330 181-302 (744)
57 PRK03371 pdxA 4-hydroxythreoni 25.5 55 0.0012 35.2 2.7 22 84-105 1-24 (326)
58 PRK11468 dihydroxyacetone kina 24.0 3.8E+02 0.0082 29.4 8.6 128 336-483 93-244 (356)
59 COG5216 Uncharacterized conser 22.4 72 0.0016 26.4 2.2 35 496-530 16-58 (67)
60 KOG2941 Beta-1,4-mannosyltrans 22.1 38 0.00083 37.0 0.8 17 523-539 126-142 (444)
61 PF12953 DUF3842: Domain of un 22.1 76 0.0016 30.0 2.6 35 87-126 1-37 (131)
62 PRK00232 pdxA 4-hydroxythreoni 20.7 81 0.0018 34.0 2.9 21 85-105 4-26 (332)
63 PRK01355 azoreductase; Reviewe 20.6 3.9E+02 0.0084 25.9 7.4 83 87-183 3-102 (199)
64 KOG1014 17 beta-hydroxysteroid 20.4 1.9E+02 0.0041 31.0 5.5 45 271-330 64-108 (312)
No 1
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=8e-122 Score=976.73 Aligned_cols=468 Identities=85% Similarity=1.325 Sum_probs=430.3
Q ss_pred hhhhhhccccccccccCCCcccccCCCCccccccc-ccchhhhcccchhhhhhhhcccccccceeecccEEEEcCCccHH
Q 009041 20 AAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHV-NNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTR 98 (546)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v~~~I~vlpGDGIGp 98 (546)
..+...|+++++++..||.++..+.+ +.|++.+ .+..........++.-+.+++..+..||+|++|||+||||||||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~piv~~~GDem~r 90 (483)
T PLN03065 13 RPALALMPSSSSSAAANPLLASNPCR--GIFNGGLSKNRRAFHVQFHRASSVRCFASAAAADRIKVQNPIVEMDGDEMTR 90 (483)
T ss_pred chhhhhcccccchhhcCcccccCchh--hhccccccccccccccccccccchhhhcchhhhccccccCCeEEecCCcchH
Confidence 33456788889999999999988865 4555443 34333444444455556666655568999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchhhccccccCCCchHHHH
Q 009041 99 IIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIR 178 (546)
Q Consensus 99 EI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~e~~l~~~~~spn~~LR 178 (546)
|||+.++++|+.++++++|+|+|+|.+++++||+++|+|++++||++||+||||++||++++++||+||+||+|||++||
T Consensus 91 ~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~~lk~~w~SpN~tiR 170 (483)
T PLN03065 91 VIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIR 170 (483)
T ss_pred HHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCCCCCCcccccccccCCceEEE
Q 009041 179 NILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALA 258 (546)
Q Consensus 179 k~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~~~~~~v~~~~~~~va~~ 258 (546)
++||||+|+|||.++++|++.++|+.||+|+|||+||+|.+.++.+.+||+++++|++++|+.+.+..+++|.+++++++
T Consensus 171 ~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~~~e~~v~~f~~~gva~~ 250 (483)
T PLN03065 171 NILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALA 250 (483)
T ss_pred HHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCCcceeEeeccCCCCeEEE
Confidence 99999999999988999999999999999999999999999999999999999999999998788888999998899999
Q ss_pred EeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCCeEEeeEehhHHHHHHhhC
Q 009041 259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKS 338 (546)
Q Consensus 259 ~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI~~e~~lVDa~amqLVk~ 338 (546)
++||+++++||||+||+||++|+++||++||+||||.|||+|+++|+|||+++|+++|.+++|+|+|+|||+|+||||++
T Consensus 251 ~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~lvk~ 330 (483)
T PLN03065 251 MYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEHSIWYEHRLIDDMVAYAVKS 330 (483)
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCCCceEEeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999878888888889999999999999999999
Q ss_pred CCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHHHHHHHHHH
Q 009041 339 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE 418 (546)
Q Consensus 339 P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~ 418 (546)
|++|||||+|||||||||++|+++|||||+||+|+|+++++++|||+||||||||++||+||+++|||+|+|+||+|||+
T Consensus 331 P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~IlA~ammL~ 410 (483)
T PLN03065 331 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE 410 (483)
T ss_pred CCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999865799999999999999999999967999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHHHHHHhhhcCCc
Q 009041 419 HRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNLGAKLREPA 489 (546)
Q Consensus 419 hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~~~L~~~~~~~~ 489 (546)
|+|++|+|+++.++|++||+||.+++++|++|+|||++.+|+++.++++++|+||+|+|+++|++++...+
T Consensus 411 hlg~ld~~~~l~~~A~~Le~Av~~tie~G~~T~DLg~~~~G~~~~~~~~~~T~ef~daV~~~L~~~~~~~~ 481 (483)
T PLN03065 411 HRAKLDKNEELLDFVHKLESACIETVESGKMTKDLAILIHGPKVSREFYLNTEEFIDAVAQTLATKRGEPA 481 (483)
T ss_pred HhCCCCccchHHHHHHHHHHHHHHHHHcCCcccccccccCCCcccCCCCcCHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999877767444466789999999999999998887544
No 2
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-108 Score=865.36 Aligned_cols=407 Identities=73% Similarity=1.198 Sum_probs=382.4
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCcc
Q 009041 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (546)
Q Consensus 80 ~ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~ 159 (546)
.||||++|+|+|+||+|.+.+|+.++++|+.++++|+|+++|+|.++++++|+++|+|++++||++||+||||++||..+
T Consensus 4 ~~~~~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~~ 83 (413)
T PTZ00435 4 GKIKVKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEA 83 (413)
T ss_pred ccccccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred chhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCCC
Q 009041 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (546)
Q Consensus 160 ~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G 239 (546)
++++++||++|+|||++||+.||||||+|||.++++|++.++|+.||+++||||||.|.++++.+.++++.+.+|++.+|
T Consensus 84 ~~~~~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~g 163 (413)
T PTZ00435 84 RVKEFNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPADG 163 (413)
T ss_pred cccccccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecCCC
Confidence 66689999999999999999999999999976799999999999999999999999999999998888888999999988
Q ss_pred CCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccC
Q 009041 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (546)
Q Consensus 240 ~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~ 319 (546)
.+|+++.+++|..++++++++|||+++|||+|+||+||++|+++||++||+||||.+||||+++|+|||+++||++|+++
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~~Tr~~~eRIar~AF~~A~~r~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~~~ 243 (413)
T PTZ00435 164 SEPQRVDVFDFKGGGVAMGMYNTDESIEGFARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFEKA 243 (413)
T ss_pred CcceeeeeeccCCCCeeEEEEeCHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhHHHHHHHHHHHHHHhCccccccC
Confidence 88999999999999998888999999999999999999999889999999999999999999999999965799999999
Q ss_pred CeEEeeEehhHHHHHHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccC
Q 009041 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (546)
Q Consensus 320 dI~~e~~lVDa~amqLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAG 399 (546)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++..++|||+||||||+|++||||
T Consensus 244 ~I~~~~~lVDa~~m~lv~~P~~fViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~HGSApdi~~~~iaG 323 (413)
T PTZ00435 244 GLWYEHRLIDDMVAQAIKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRQHQKG 323 (413)
T ss_pred CEEEEEeeHHHHHHHHhhCCCCeEEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCcCCccccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999862269999999999999999999
Q ss_pred CCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCC-CCCCCccccCHHHHHHHHH
Q 009041 400 QETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHG-PKVSREFYLNTEEFIDAVA 478 (546)
Q Consensus 400 K~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G-~~~~~~~~asT~ef~daV~ 478 (546)
|+.+|||+|+|||++|||+|+|+++.|+++.++|++|++||.+++++|.+|+|||.+.+| +++.+++.++|+||+|+|+
T Consensus 324 k~~~ANP~A~Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g~~T~Dlg~~~~G~~~~~~~~~~~T~e~~daV~ 403 (413)
T PTZ00435 324 KETSTNSIASIFAWTRGLAHRAKLDNNQELVKFCQALERSCIETIEAGFMTKDLAICVHGSSKVTRSDYLNTEEFIDKVA 403 (413)
T ss_pred CCCccChHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCCCccccccccCCCccccCCCCcCHHHHHHHHH
Confidence 744999999999999999999999989999999999999999999999999999643225 2234556799999999999
Q ss_pred HHHHhhhc
Q 009041 479 TNLGAKLR 486 (546)
Q Consensus 479 ~~L~~~~~ 486 (546)
++|.+++.
T Consensus 404 ~~L~~~~~ 411 (413)
T PTZ00435 404 EKLKKKLG 411 (413)
T ss_pred HHHHHHhc
Confidence 99988764
No 3
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=4.1e-108 Score=861.32 Aligned_cols=407 Identities=72% Similarity=1.211 Sum_probs=376.2
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCcc
Q 009041 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (546)
Q Consensus 80 ~ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~ 159 (546)
+||||.+|+|+|+||+|.+.+|+.+++.|+.++++|+|+++|+|.+++++||+++|+|+++++|++|++||||++||...
T Consensus 1 ~~~~~~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~ 80 (409)
T TIGR00127 1 SKIKVANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEA 80 (409)
T ss_pred CCccccCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred chhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCCC
Q 009041 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (546)
Q Consensus 160 ~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G 239 (546)
++.++.|+++|+|||++||++||||||+|||.++++++..++|..||+|+||||||.|.+.++.+.++++++.+|.+.++
T Consensus 81 ~~~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~ 160 (409)
T TIGR00127 81 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDG 160 (409)
T ss_pred cccccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCC
Confidence 77788899999999999999999999999987899999999999999999999999999999999889999999999887
Q ss_pred CCCccccccccc-CCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhcccccc
Q 009041 240 TGPVELDVYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (546)
Q Consensus 240 ~~~~~~~v~~~~-~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~ 318 (546)
..|++..+++|. +++++++++||++++|||||+||+||++|+++||++||+||||.+||+|+++|+|||+++||++|++
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~ 240 (409)
T TIGR00127 161 TQKVTLKVYDFEEGGGVAMAMYNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEA 240 (409)
T ss_pred CcccceeeeeccCCCCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccC
Confidence 666665556665 3577888899999999999999999999998999999999999999999999999975699999999
Q ss_pred CCeEEeeEehhHHHHHHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhccc
Q 009041 319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (546)
Q Consensus 319 ~dI~~e~~lVDa~amqLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IA 398 (546)
++|+++|++||+|+||||++|++|||||+|||||||||++|+++|||||+||+|+|++++.+||||+||||||+|++|||
T Consensus 241 ~~I~~~~~lVDa~~m~lv~~P~~fViv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HGSApdi~~~~ia 320 (409)
T TIGR00127 241 LGIWYEHRLIDDMVAQALKSEGGFIWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHGTVTRHYRMYQK 320 (409)
T ss_pred CCEEEEEeeHHHHHHHHhhCCCCcEEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccCCCcccchhhhC
Confidence 99999999999999999999999999999999999999999999999999999999998767899999999999999999
Q ss_pred CCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHH
Q 009041 399 GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVA 478 (546)
Q Consensus 399 GK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~ 478 (546)
||+.+|||+|+|||++|||+|+|+++.|+.+.++|++|++||.+++++|++|+||+...+|.....++.++|+||+|+|+
T Consensus 321 Gk~~~ANP~A~IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g~~T~Dl~~~~GG~~~~~~~~~~T~e~~daV~ 400 (409)
T TIGR00127 321 GQETSTNSIASIFAWSRGLAHRAKLDNNPELSKFANILESACINTVEAGIMTKDLALILGGSPVERSAYLNTEEFIDAVE 400 (409)
T ss_pred CCCCccChHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcCCcccccccccCCCcccCCCCcCHHHHHHHHH
Confidence 97449999999999999999999998888899999999999999999999999992100163223445699999999999
Q ss_pred HHHHhhhc
Q 009041 479 TNLGAKLR 486 (546)
Q Consensus 479 ~~L~~~~~ 486 (546)
++|++++.
T Consensus 401 ~~L~~~~~ 408 (409)
T TIGR00127 401 ERLKKKIA 408 (409)
T ss_pred HHHHHHhc
Confidence 99987663
No 4
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=9.7e-107 Score=850.21 Aligned_cols=400 Identities=69% Similarity=1.163 Sum_probs=357.6
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCcc
Q 009041 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (546)
Q Consensus 80 ~ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~ 159 (546)
.||||++||++|||||||||||++++++|++++++|+|+++|+|.++++++|+.+|+++++++|++|++||||++||...
T Consensus 2 ~~~~~~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~~ 81 (402)
T PRK08299 2 AKIKVKNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDEA 81 (402)
T ss_pred CccccCCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCcc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred chhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCCC
Q 009041 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (546)
Q Consensus 160 ~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G 239 (546)
++.++++++.|+|+|++||++||||||+|||+++++|+..+++..|||||||||||+|+|.++.....|...+.|.+..|
T Consensus 82 ~~~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~g 161 (402)
T PRK08299 82 RVKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTKPIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGEDG 161 (402)
T ss_pred cccccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCCCEEEEecccCCcccceeEEeccCccceeeeecCCC
Confidence 33333455668999999999999999999987788666656556689999999999999999887667778888877665
Q ss_pred CCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccC
Q 009041 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (546)
Q Consensus 240 ~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~ 319 (546)
. +.+..++++.+.+++..+++||+++|||+|+||+||++|+++||+|||+||||.+||||+++|+|||+++||+.|.++
T Consensus 162 ~-~~e~~~~~~~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~~~ 240 (402)
T PRK08299 162 E-PIEHEVHDFPGAGVAMGMYNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFEAA 240 (402)
T ss_pred c-cccceecccccCceeEEEeecHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccccC
Confidence 2 444445555545565556799999999999999999999889999999999999999999999999955899999999
Q ss_pred CeEEeeEehhHHHHHHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccC
Q 009041 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (546)
Q Consensus 320 dI~~e~~lVDa~amqLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAG 399 (546)
+|+++|++||++|||||++|++|||||+|||||||||++|+++||||++||+|+|++++.+||||+||||||||++||||
T Consensus 241 ~i~~~~~~vDa~~~~lv~~P~~fVivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~HGSAPD~~~~~IaG 320 (402)
T PRK08299 241 GITYEHRLIDDMVASALKWEGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQKG 320 (402)
T ss_pred cEEEEEeeHHHHHHHHHhCcCCcEEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCCCCCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999998864369999999999999999999
Q ss_pred CCCc-cCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHH
Q 009041 400 QETS-TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVA 478 (546)
Q Consensus 400 K~ti-ANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~ 478 (546)
|| + |||+|+|||++|||+|+|.+++|+.+.++|++|++||.+++++|.+|+|||...+|. ...++|+||+|+|+
T Consensus 321 k~-~~ANP~A~IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g~~T~Dlg~~~g~~----~g~~tT~e~~daIi 395 (402)
T PRK08299 321 EE-TSTNPIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESGFMTKDLALLVGPD----QKWLTTEEFLDAID 395 (402)
T ss_pred CC-CccCHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHcCCcCccchhccCCC----CCCcCHHHHHHHHH
Confidence 99 7 999999999999999999988889999999999999999999999999995211131 02589999999999
Q ss_pred HHHHhhh
Q 009041 479 TNLGAKL 485 (546)
Q Consensus 479 ~~L~~~~ 485 (546)
++|.+++
T Consensus 396 ~~l~~~~ 402 (402)
T PRK08299 396 ENLEKAL 402 (402)
T ss_pred HHHHhhC
Confidence 9997764
No 5
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.9e-106 Score=840.70 Aligned_cols=379 Identities=34% Similarity=0.487 Sum_probs=359.0
Q ss_pred EEEcCCccHHHHHHHHHHHHhcCCCcee-EEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchhhcccc
Q 009041 89 VEMDGDEMTRIIWQMIKDKLIFPYLDLD-IKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLK 167 (546)
Q Consensus 89 ~vlpGDGIGpEI~~~~~~~l~~~~~~i~-~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~e~~l~ 167 (546)
|.|+||||++.+|+.+++.|+.|+++++ |+|||||.++||+|+++++.|+++++++++|++|||++||++.+|+||+||
T Consensus 2 v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk 81 (393)
T PLN00096 2 VYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLK 81 (393)
T ss_pred eeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchh
Confidence 7899999999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHhcCc-EEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCCCCCCcccc
Q 009041 168 SMWRSPNGTIRNILNG-TVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELD 246 (546)
Q Consensus 168 ~~~~spn~~LRk~LdL-yanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~~~~~~ 246 (546)
+||+|||++||+.||+ +++++||.|+++| ++|+.+|+|.||..+|+|.. ++.+++||+++++|+|++|++|++++
T Consensus 82 ~~w~sPNgtiR~~l~G~tvfR~pi~~~~i~---~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~ 157 (393)
T PLN00096 82 KAWGSPNGAMRRGWNGITISRDTIHIDGVE---LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVD 157 (393)
T ss_pred hhcCCCcHHHHhhcCCceEeeCCEecCCCC---CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEE
Confidence 9999999999999999 9999999888885 89999999999999999999 99999999999999999999999999
Q ss_pred ccccc-CCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhcccccc-----CC
Q 009041 247 VYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE-----HS 320 (546)
Q Consensus 247 v~~~~-~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~-----~d 320 (546)
+++|+ +++|++.|+||.++++||||+||+||++|+++||++||+||||++||||+ +|+|||+++|+++|++ ++
T Consensus 158 ~~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~ 236 (393)
T PLN00096 158 DRTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSG 236 (393)
T ss_pred EEecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCc
Confidence 99999 68899999999999999999999999999999999999999999999998 9999997799988888 56
Q ss_pred eEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCC--CC-ceeecccccccccchhhc
Q 009041 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSD--GK-TLEAEAAHGTVTRHFRLH 396 (546)
Q Consensus 321 I~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d--~a-~~~FEp~HGSAPd~~~~~ 396 (546)
|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ +. +++|||+|||||||+++|
T Consensus 237 V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~HGSApdiag~~ 316 (393)
T PLN00096 237 DELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTDMDEAR 316 (393)
T ss_pred eEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCCCChHHhhhhh
Confidence 7899999999999999999999 9999999999999999999999999999999955 53 369999999999999999
Q ss_pred ccCCCCccCchhHHHHHHHHHHhhhccCCcH-HHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHH
Q 009041 397 QKGQETSTNSIASIFAWTRGLEHRAKLDKNE-RLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFID 475 (546)
Q Consensus 397 IAGK~tiANPiA~IlS~ammL~hlg~ld~~~-~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~d 475 (546)
++||+++|||+|+||||+|||+|++++++++ ++.++|++||+||.+++++|.+|+||+ |. ..++|+||+|
T Consensus 317 ~~Gk~~~ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G~~T~DL~----g~-----~~~tT~ef~d 387 (393)
T PLN00096 317 LRGEETSLNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREGRGTRDLC----GA-----GGLTTEQFID 387 (393)
T ss_pred hcCCCCccChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcCCcCcCCC----CC-----CCCCHHHHHH
Confidence 9999669999999999999999999877653 678999999999999999999999996 41 1589999999
Q ss_pred HHHHHH
Q 009041 476 AVATNL 481 (546)
Q Consensus 476 aV~~~L 481 (546)
+|+++|
T Consensus 388 aI~~~L 393 (393)
T PLN00096 388 AVAEEL 393 (393)
T ss_pred HHHHhC
Confidence 999875
No 6
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.1e-105 Score=801.70 Aligned_cols=408 Identities=75% Similarity=1.252 Sum_probs=401.0
Q ss_pred cccceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCC
Q 009041 78 GIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPD 157 (546)
Q Consensus 78 ~~~ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~ 157 (546)
...||+|.+|||.++||||++.||+.+++.|+.|+++++++|||+|.++||+|+|+++.|+.+++++++|++|||++||+
T Consensus 11 ~~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPD 90 (422)
T KOG1526|consen 11 GMSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPD 90 (422)
T ss_pred hhceeeccCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCCc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCC
Q 009041 158 ETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPE 237 (546)
Q Consensus 158 ~~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~ 237 (546)
+.+|+||+||+||+|||++||+.|+++++++||.|+++|+++|+|..+|+|.||+.+|+|.+++..+++||+++|+|.|.
T Consensus 91 EaRv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~ 170 (422)
T KOG1526|consen 91 EARVEEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPS 170 (422)
T ss_pred HHHHHHhhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccc
Q 009041 238 DGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (546)
Q Consensus 238 ~G~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~ 317 (546)
+|..+.+++||+|+++|++..|+||.++++.+|+.+|+||.++++++++.+|++|||+|||.|++||+|+|+++|+.+|+
T Consensus 171 dg~~~~~~~V~~f~~~G~~~~m~~~dds~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kfe 250 (422)
T KOG1526|consen 171 DGTQKVTLKVYDFKGSGVAAMMYNTDDSIRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKFE 250 (422)
T ss_pred CCCcceeEEEEecCCCceeEEEeeccchhhHHHHHHHHHHHHhcCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEeeEehhHHHHHHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcc
Q 009041 318 EHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQ 397 (546)
Q Consensus 318 ~~dI~~e~~lVDa~amqLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~I 397 (546)
+.+|||||++||+|++|++|+-++|||+|+||+||++||+.||.+||||||+|..++|||++++.|++|||+++|||.|+
T Consensus 251 ~~~IwYEHRLIDDmVAqa~KS~GGfvwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~hq 330 (422)
T KOG1526|consen 251 ALGIWYEHRLIDDMVAQAMKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMHQ 330 (422)
T ss_pred hhcchhhhhhHHHHHHHHHhcCCceEEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHH
Q 009041 398 KGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAV 477 (546)
Q Consensus 398 AGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV 477 (546)
+|++|++||||+|+||+++|.|+|+||+|+++..+++.||+|+..+++.|+||+||++|+|| ++.|..+++|+||.|+|
T Consensus 331 kG~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G~MTKDLal~i~g-~~~r~~y~~T~eFidav 409 (422)
T KOG1526|consen 331 KGQETSTNSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESGKMTKDLALCIHG-KVERSDYLNTEEFIDAV 409 (422)
T ss_pred cCCCccCcchHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhccchHhHHHHhcC-CccccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 78899999999999999
Q ss_pred HHHHHhhhc
Q 009041 478 ATNLGAKLR 486 (546)
Q Consensus 478 ~~~L~~~~~ 486 (546)
..+|++.+.
T Consensus 410 ~~~L~~~~~ 418 (422)
T KOG1526|consen 410 ASNLKKKLA 418 (422)
T ss_pred HHHHHHHHh
Confidence 999988765
No 7
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-104 Score=811.48 Aligned_cols=337 Identities=22% Similarity=0.228 Sum_probs=307.0
Q ss_pred ecccEEEEcCCccHHHHHHHHHHHHhcCC---CceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccc
Q 009041 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFPY---LDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (546)
Q Consensus 84 v~~~I~vlpGDGIGpEI~~~~~~~l~~~~---~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~ 160 (546)
+.++|++||||||||||+++++++|.+.. ++|+|+++++|.++++++|.++|+|++++|+++|++||||+++|.++.
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~ 81 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP 81 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence 35789999999999999999999985443 899999999999999999999999999999999999999999997653
Q ss_pred hhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC--CCcEEEEeeccCCccccccceecCCCceeeeecCCC
Q 009041 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW--KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (546)
Q Consensus 161 ~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~--~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~ 238 (546)
. +...++.+++|||+||||||+|| +|++|++.++. ++|||||||||||+|+|.++...++
T Consensus 82 ~-----~~~~~~~ll~lRk~l~lyANlRP--~k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~----------- 143 (348)
T COG0473 82 L-----PRPERGLLLALRKELDLYANLRP--AKSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGG----------- 143 (348)
T ss_pred C-----CCcccchHHHHHHhcCceeeeee--cccCCCCCCccCCCccEEEEeeCCCccccCCCccccCC-----------
Confidence 2 12367899999999999999999 57899987765 5999999999999999988742211
Q ss_pred CCCCcccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcC-CCCEEEEeCCCccccchhHHHHHHHHHHHhhhcccc
Q 009041 239 GTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (546)
Q Consensus 239 G~~~~~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~r-kkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f 316 (546)
.+++ +.++|||+++|||+|+|||+|++| ++|||+|||+|||+.+||||+++|+||+ ++||
T Consensus 144 --------------~eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~yP--- 205 (348)
T COG0473 144 --------------GEVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEYP--- 205 (348)
T ss_pred --------------CeEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcCC---
Confidence 1244 458999999999999999999999 7999999999999999999999999999 8999
Q ss_pred ccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhh
Q 009041 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRL 395 (546)
Q Consensus 317 ~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~ 395 (546)
||+++|+|||+++||||++|++| ||||+|||||||||++|+++|||||+||||+|++...+||||+||||||
T Consensus 206 ---dv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPD---- 278 (348)
T COG0473 206 ---DVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPD---- 278 (348)
T ss_pred ---CcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCccc----
Confidence 99999999999999999999999 9999999999999999999999999999999995325799999999999
Q ss_pred cccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHc-CCCCcchhcccCCCCCCCccccCHHHHH
Q 009041 396 HQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVET-GKMTKDLAILVHGPKVSREFYLNTEEFI 474 (546)
Q Consensus 396 ~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~-G~~T~DLg~~~~G~~~~~~~~asT~ef~ 474 (546)
||||| +|||+|+|||++|||+|+|. .++|++|++||.+++++ |++|+||| | .++|.||+
T Consensus 279 -IAGkg-iANPiA~IlS~aMML~~~g~-------~~~A~~Ie~Av~~vl~~~g~~T~Dlg----g-------~~~T~e~~ 338 (348)
T COG0473 279 -IAGKG-IANPIATILSAAMMLRHLGE-------KEAADAIENAVEKVLAEGGIRTPDLG----G-------NATTSEVG 338 (348)
T ss_pred -ccCCC-ccChHHHHHHHHHHHHHhCC-------chHHHHHHHHHHHHHHcCCCCCcccC----C-------CccHHHHH
Confidence 99999 99999999999999999994 45999999999999995 68999998 8 68899999
Q ss_pred HHHHHHHHh
Q 009041 475 DAVATNLGA 483 (546)
Q Consensus 475 daV~~~L~~ 483 (546)
|+|+++|..
T Consensus 339 d~I~~~l~~ 347 (348)
T COG0473 339 DAIAKALAS 347 (348)
T ss_pred HHHHHHHhc
Confidence 999999864
No 8
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=5.8e-101 Score=820.64 Aligned_cols=379 Identities=22% Similarity=0.242 Sum_probs=330.6
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcC-CCCcHHHHHHHHhcCeEEEecccCCCccchhh
Q 009041 85 QNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCATITPDETRMKE 163 (546)
Q Consensus 85 ~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg-~~lp~etleaik~~daiLkGav~tP~~~~~~e 163 (546)
.++|++|||||||||||++++++|.+.+++|+|+++++|.++++++| +++|++++++|+++|++||||++||.+.+
T Consensus 4 ~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~~~--- 80 (482)
T PRK09222 4 KTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQGGG--- 80 (482)
T ss_pred cceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCccC---
Confidence 47899999999999999999999987789999999999999999987 79999999999999999999999996432
Q ss_pred ccccccCCCchHHHHHhcCcEEEeeecccccC-CCCCCCC-CCcEEEEeeccCCccccccceecCCCceeeeecCCCCCC
Q 009041 164 FGLKSMWRSPNGTIRNILNGTVFREPILCQNI-PRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTG 241 (546)
Q Consensus 164 ~~l~~~~~spn~~LRk~LdLyanvRPi~~k~i-P~~~~~~-~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~ 241 (546)
++|+|++||++||||||+|| ++++ |++.+++ ++|+|||||||||+|+|.|++..
T Consensus 81 ------~~s~~~~LRk~ldLYaNvRP--~r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~~---------------- 136 (482)
T PRK09222 81 ------YKSLNVTLRKTLGLYANVRP--CVSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQT---------------- 136 (482)
T ss_pred ------ccchHHHHHHHcCCeEEeee--EEecCCCCCCCCCCcCEEEEEeccCCeeccceeecC----------------
Confidence 67899999999999999999 5778 8877654 69999999999999999986531
Q ss_pred CcccccccccCCceEEE-EeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccC
Q 009041 242 PVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (546)
Q Consensus 242 ~~~~~v~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~ 319 (546)
+++++. +++||+++|||+|+||+||++|+ ++||++||+||||.+||||+++|+||| ++||
T Consensus 137 -----------~~~~~~~k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva-~eyP------ 198 (482)
T PRK09222 137 -----------PDVYQCLKLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIA-KEYP------ 198 (482)
T ss_pred -----------CCeeeEeeccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHHH-hhCC------
Confidence 234444 78999999999999999999996 689999999999999999999999999 7999
Q ss_pred CeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhccc
Q 009041 320 SIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (546)
Q Consensus 320 dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IA 398 (546)
+|+++|++||+++||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+|||||| ||
T Consensus 199 dI~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~GslGlapSanig~~~--amFEpvHGSAPd-----IA 271 (482)
T PRK09222 199 DIEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEISGSVGLAGSANIGEEY--AMFEAVHGSAPD-----IA 271 (482)
T ss_pred CceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhcCCcccccceecCCCc--eeeECCCCCchh-----hc
Confidence 99999999999999999999999 99999999999999999999999999999999886 589999999999 99
Q ss_pred CCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHH
Q 009041 399 GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVA 478 (546)
Q Consensus 399 GK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~ 478 (546)
||| +|||+|+|+|++|||+|+| +.++|++|++||.+++++|++|+||+ |++.+. ..++|+||+|+|+
T Consensus 272 Gk~-iANP~a~IlSaamML~hlG-------~~~~A~~I~~Av~~tl~~G~~T~Dl~----g~~~~~-~~~~T~e~~~aVi 338 (482)
T PRK09222 272 GKN-IANPSGLLNAAVMMLVHIG-------QFDIAELIENAWLKTLEDGIHTADIY----NEGVSK-KKVGTKEFAEAVI 338 (482)
T ss_pred CCC-ccCcHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHcCCCCcccC----CCCCCC-CCcCHHHHHHHHH
Confidence 999 9999999999999999999 57899999999999999999999996 421111 2589999999999
Q ss_pred HHHHhhhcCCc-eEEEe-cccccccccccccCCceeEEeeeeccccccccceeeeeecccccc
Q 009041 479 TNLGAKLREPA-MVILV-LDTACRLRRTCSIGSNFTLLQVFYCISQILRGHEFFIALHNFTSH 539 (546)
Q Consensus 479 ~~L~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (546)
++|.+++.... +.+-. ..+.... . ...--...|-|+|.|+||+|+.-..+
T Consensus 339 ~~l~~~p~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~k~lvGvDvfv~~~~~~~~ 390 (482)
T PRK09222 339 ENLGQKPEKLKPASYPLAKKPASPI--------D---YYPRTKEKKELVGVDVFVDWDGSDAN 390 (482)
T ss_pred HHHhcCcccccccccccccccccCc--------c---cccCCCCceEEEEEEEEEECCCCCHH
Confidence 99998887443 22211 1111000 0 11223456899999999999976643
No 9
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=7.8e-101 Score=800.29 Aligned_cols=326 Identities=24% Similarity=0.285 Sum_probs=303.6
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchhhcc
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~e~~ 165 (546)
++|++||||||||||+++++++|.+.+++|+|+++++|.++++++|+++|+|++++|+++|++||||+++|...
T Consensus 42 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~~------ 115 (372)
T PLN00118 42 ITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGK------ 115 (372)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCccc------
Confidence 68999999999999999999999877899999999999999999999999999999999999999999999532
Q ss_pred ccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC-CCcEEEEeeccCCccccccceecCCCceeeeecCCCCCCCcc
Q 009041 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (546)
Q Consensus 166 l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~-~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~~~~ 244 (546)
.++|+|++|||+||||||+|| +|.+||+.+++ ++|+|||||||||+|+|.+++..
T Consensus 116 ---~~~s~~~~LRk~ldLyaNvRP--vr~~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~~------------------- 171 (372)
T PLN00118 116 ---GHRSLNLTLRKELGLYANVRP--CYSLPGYKTRYDDVDLVTIRENTEGEYSGLEHQVV------------------- 171 (372)
T ss_pred ---cccCchHHHHHHcCCeeeecc--cccCCCccCcccCceEEEEEecCCCcccceeeecc-------------------
Confidence 267899999999999999999 57789887664 69999999999999999876431
Q ss_pred cccccccCCceEEE-EeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCCeE
Q 009041 245 LDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIW 322 (546)
Q Consensus 245 ~~v~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI~ 322 (546)
++++.. .++||+++|||+|+||+||++|+ ++||++||+||||.+||||+++|+||+ ++|| +|+
T Consensus 172 --------~gv~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva-~eyP------dI~ 236 (372)
T PLN00118 172 --------RGVVESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVA-EKYP------EIV 236 (372)
T ss_pred --------CCeEEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHH-hhCC------Cce
Confidence 244444 78999999999999999999996 679999999999999999999999999 7999 999
Q ss_pred EeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCC
Q 009041 323 YEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQE 401 (546)
Q Consensus 323 ~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~ 401 (546)
++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ..||||+|||||| |||||
T Consensus 237 ~~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSanig~~~-~a~FEpvHGSAPd-----IAGk~ 310 (372)
T PLN00118 237 YEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGENG-LALAEAVHGSAPD-----IAGKN 310 (372)
T ss_pred EEeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcceeecCCC-CeEEECCCCChhh-----hCCCC
Confidence 99999999999999999999 99999999999999999999999999999999986 3699999999999 99999
Q ss_pred CccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcC-CCCcchhcccCCCCCCCccccCHHHHHHHHHHH
Q 009041 402 TSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREFYLNTEEFIDAVATN 480 (546)
Q Consensus 402 tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLg~~~~G~~~~~~~~asT~ef~daV~~~ 480 (546)
+|||+|+|||++|||+|+| +.++|++|++||.+++++| .+|+||| | .++|+||+|+|+++
T Consensus 311 -iANP~A~IlS~amML~~lG-------~~~~A~~I~~Av~~~l~~G~~~T~DlG----G-------~~sT~e~~dav~~~ 371 (372)
T PLN00118 311 -LANPTALLLSAVMMLRHLK-------LNEQAEQIHNAILNTIAEGKYRTADLG----G-------SSTTTDFTKAICDH 371 (372)
T ss_pred -CcCcHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHHHhh
Confidence 9999999999999999999 6789999999999999999 6999998 8 69999999999987
Q ss_pred H
Q 009041 481 L 481 (546)
Q Consensus 481 L 481 (546)
|
T Consensus 372 l 372 (372)
T PLN00118 372 L 372 (372)
T ss_pred C
Confidence 5
No 10
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-100 Score=790.80 Aligned_cols=329 Identities=21% Similarity=0.257 Sum_probs=303.1
Q ss_pred ecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchhh
Q 009041 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKE 163 (546)
Q Consensus 84 v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~e 163 (546)
|+++|++|||||||||||++++++|.+.+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.+.+
T Consensus 1 ~~~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~~--- 77 (334)
T PRK08997 1 MKQTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGEG--- 77 (334)
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCcC---
Confidence 45789999999999999999999997667899999999999999999999999999999999999999999996432
Q ss_pred ccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC-CCcEEEEeeccCCccccccceecCCCceeeeecCCCCCCC
Q 009041 164 FGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGP 242 (546)
Q Consensus 164 ~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~-~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~~ 242 (546)
++|++++|||+||||+|+|| +|++||+.+++ ++|+|||||||||+|+|.+++.. + +
T Consensus 78 ------~~~~~~~LR~~ldlyanvRP--~k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~-~-----------~--- 134 (334)
T PRK08997 78 ------FTSINVTLRKKFDLYANVRP--VLSFPGTKARYDNIDIITVRENTEGMYSGEGQTVS-E-----------D--- 134 (334)
T ss_pred ------ccchHHHHHHHcCCeEEEee--cccCCCCCCccCCcCEEEEEeccCceecCccceec-C-----------C---
Confidence 56889999999999999999 57789887765 69999999999999999875421 0 0
Q ss_pred cccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCC
Q 009041 243 VELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (546)
Q Consensus 243 ~~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~d 320 (546)
..++ ..+++||+++|||+|+||+||++|+ ++||++||+||||.+||||+++|+||| ++|| +
T Consensus 135 ----------~~~a~~~~~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yP------~ 197 (334)
T PRK08997 135 ----------GETAEATSIITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVA-LRYP------D 197 (334)
T ss_pred ----------CceEEEEEEeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHH-hhCC------C
Confidence 1134 4578999999999999999999995 679999999999999999999999999 6999 9
Q ss_pred eEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccC
Q 009041 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (546)
Q Consensus 321 I~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAG 399 (546)
|+++|+|||+++||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. .+|||+|||||| |||
T Consensus 198 V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~HGSAPd-----IAG 270 (334)
T PRK08997 198 IEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGRDA--AIFEAVHGSAPD-----IAG 270 (334)
T ss_pred eEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCCCCcCcceeECCCc--eEEECCCCchhh-----hCC
Confidence 9999999999999999999999 99999999999999999999999999999999875 589999999999 999
Q ss_pred CCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCC-CCcchhcccCCCCCCCccccCHHHHHHHHH
Q 009041 400 QETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK-MTKDLAILVHGPKVSREFYLNTEEFIDAVA 478 (546)
Q Consensus 400 K~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~-~T~DLg~~~~G~~~~~~~~asT~ef~daV~ 478 (546)
|| +|||+|+|||++|||+|+| +.++|++|++||.+++++|+ +|+||| | .++|+||+|+|+
T Consensus 271 k~-iANP~a~IlS~amML~~lG-------~~~~A~~i~~AV~~vl~~G~~~T~DlG----G-------~a~T~e~~~av~ 331 (334)
T PRK08997 271 KN-LANPTSVILAAIQMLEYLG-------MPDKAERIRKAIVAVIEAGDRTTRDLG----G-------THGTTDFTQAVI 331 (334)
T ss_pred CC-ccCcHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHHH
Confidence 99 9999999999999999999 67899999999999999995 799998 8 699999999999
Q ss_pred HHH
Q 009041 479 TNL 481 (546)
Q Consensus 479 ~~L 481 (546)
++|
T Consensus 332 ~~l 334 (334)
T PRK08997 332 DRL 334 (334)
T ss_pred hhC
Confidence 875
No 11
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=1.2e-100 Score=815.95 Aligned_cols=376 Identities=24% Similarity=0.253 Sum_probs=325.7
Q ss_pred cEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcC-CCCcHHHHHHHHhcCeEEEecccCCCccchhhcc
Q 009041 87 PIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (546)
Q Consensus 87 ~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg-~~lp~etleaik~~daiLkGav~tP~~~~~~e~~ 165 (546)
||++|||||||||||++++++|.+.+++|+|+++++|.++++++| +++|++++++|+++|++||||++||.+.+
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~~----- 76 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGGG----- 76 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCccC-----
Confidence 699999999999999999999987788999999999999999995 89999999999999999999999996432
Q ss_pred ccccCCCchHHHHHhcCcEEEeeecccccC-CCCCCCC-CCcEEEEeeccCCccccccceecCCCceeeeecCCCCCCCc
Q 009041 166 LKSMWRSPNGTIRNILNGTVFREPILCQNI-PRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPV 243 (546)
Q Consensus 166 l~~~~~spn~~LRk~LdLyanvRPi~~k~i-P~~~~~~-~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~~~ 243 (546)
.+|+|++|||+||||||+|| ++++ |++.+++ ++|+|||||||||+|+|.|++..
T Consensus 77 ----~~s~~~~LRk~ldLYANvRP--v~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~------------------ 132 (473)
T TIGR02924 77 ----HKSLNVTLRKTLGLYANIRP--CVSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQT------------------ 132 (473)
T ss_pred ----cccHHHHHHHHcCCeEEEEE--eeccCCCCCCccCCcCEEEEEeccCceecCceeecc------------------
Confidence 57889999999999999999 5778 7776654 69999999999999999987531
Q ss_pred ccccccccCCceEE-EEeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCCe
Q 009041 244 ELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSI 321 (546)
Q Consensus 244 ~~~v~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI 321 (546)
+++++ ..++||+++|||+|+||+||++|+ +|||++||+||||.+||||+++|+||| ++|| +|
T Consensus 133 ---------~~~~~~~kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva-~eyP------dI 196 (473)
T TIGR02924 133 ---------PDTYECTKLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIA-AEYP------DI 196 (473)
T ss_pred ---------CChheEeEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHHH-hhCC------Cc
Confidence 13333 478999999999999999999996 789999999999999999999999999 7999 99
Q ss_pred EEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCC
Q 009041 322 WYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQ 400 (546)
Q Consensus 322 ~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK 400 (546)
+++|++||+++||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ +||||+|||||| ||||
T Consensus 197 ~~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSaNiG~~~--amFEpvHGSAPd-----IAGk 269 (473)
T TIGR02924 197 ESEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEEY--AMFEAVHGSAPD-----IAGQ 269 (473)
T ss_pred EEeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCcCcccceecCCCc--ceeecCCCchhh-----hCCC
Confidence 999999999999999999999 99999999999999999999999999999999886 489999999999 9999
Q ss_pred CCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHHHH
Q 009041 401 ETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATN 480 (546)
Q Consensus 401 ~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~~~ 480 (546)
| +|||+|+|+|++|||+|+| +.++|++|++||.+++++|++|+||+ |++.+. ..++|+||+|+|+++
T Consensus 270 ~-iANP~a~IlSaamML~hLG-------~~~~A~~I~~AV~~vl~~G~~T~Dl~----~~~~~g-g~~sT~e~~daVi~~ 336 (473)
T TIGR02924 270 N-IANPSGLLNAAIQMLVHIG-------QSDIAQLIYNAWLKTLEDGVHTADIY----NEKTSK-QKVGTKEFAEAVTAN 336 (473)
T ss_pred C-ccChHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCcCcccc----ccccCC-CCcCHHHHHHHHHHH
Confidence 9 9999999999999999999 57899999999999999999999996 311100 268999999999999
Q ss_pred HHhhhcCCceEEEecccccccccccccCCceeEEeeeeccc-cccccceeeeeecccc
Q 009041 481 LGAKLREPAMVILVLDTACRLRRTCSIGSNFTLLQVFYCIS-QILRGHEFFIALHNFT 537 (546)
Q Consensus 481 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 537 (546)
|.+++...+.+..- .+. .+ -.+.+.-++ ..+ |.|+|.|+||+|....
T Consensus 337 l~~~p~~~~~~~~~-~~~----~~--~~~~~~~~~---~~~~~~l~g~d~~~~~~~~~ 384 (473)
T TIGR02924 337 LGKKPETLPKALYS-NSF----HE--SHINYSREQ---SYKVKVLVGVDIFIKWDGSS 384 (473)
T ss_pred hccccccCcccccc-ccc----cc--ccccccccC---CCCccEEEEEEEEEecCCCC
Confidence 99888755333221 110 00 011111111 122 6699999999998664
No 12
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=6.7e-100 Score=800.16 Aligned_cols=380 Identities=75% Similarity=1.206 Sum_probs=329.8
Q ss_pred ccceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCc
Q 009041 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (546)
Q Consensus 79 ~~ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~ 158 (546)
+.||||++|+++|||||||||+|++++++|++++++|+|+++|+|.+++++||+++|+|++++|+++|++||||++||..
T Consensus 3 ~~~~~~~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~ 82 (410)
T PLN00103 3 FEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (410)
T ss_pred cccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred cchhhccccccCCCchHHHHHhcCcEEEeeecccccCC----CCCCC----------------------CCCcEEEEeec
Q 009041 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIP----RIVPG----------------------WKKPICIGRHA 212 (546)
Q Consensus 159 ~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP----~~~~~----------------------~~vDiVIvREn 212 (546)
.++.|+++++.|+|||++||++||||||+|||.+|++| |+.++ .++|+||||||
T Consensus 83 ~~~~~~~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivREN 162 (410)
T PLN00103 83 ARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEG 162 (410)
T ss_pred ccccccCccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecC
Confidence 44445556667999999999999999999996667777 54332 35888999999
Q ss_pred cCCccccccceecCCCceeeeecCCCCCCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCc
Q 009041 213 FGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTI 292 (546)
Q Consensus 213 tEG~Y~g~e~~~~~~g~~~~~~~~~~G~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNV 292 (546)
|||+| ++.... |. | ..+++...++|+++++||+|+||+||++|+++||++||+||
T Consensus 163 TEg~y---e~~~~~-------~~---g------------~~~v~~~~~~T~~~~~Riar~AFe~A~~r~~~vt~v~KaNV 217 (410)
T PLN00103 163 KDEKT---ELEVYN-------FT---G------------AGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTI 217 (410)
T ss_pred CCcee---EEEeec-------cC---C------------CcceEEEEEcCHHHHHHHHHHHHHHHHhcCCcEEEECCCCC
Confidence 99999 222110 00 0 12444545569999999999999999999888999999999
Q ss_pred cccchhHHHHHHHHHHHhhhccccccCCeEEeeEehhHHHHHHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccc
Q 009041 293 LKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVL 372 (546)
Q Consensus 293 lk~tdGlFrei~~eVa~~eYP~~f~~~dI~~e~~lVDa~amqLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSan 372 (546)
||.+||+|+++|+||++++|.++|.+++|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|
T Consensus 218 lk~~dglf~~~~~eva~~~~~~eyp~~~I~~~~~lVDa~a~~lv~~P~~fViv~~NLfGDIlSDlaA~l~GslGlapSan 297 (410)
T PLN00103 218 LKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVL 297 (410)
T ss_pred chhhHHHHHHHHHHHHHhhhhhhCCCCceEEEEeEHHHHHHHHhcCCCCCEEEEcccchHHHHHHHHHhcCchhhhhccc
Confidence 99999999999999996444444445579999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeecccccccccchhh-cccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCc
Q 009041 373 LSSDGKTLEAEAAHGTVTRHFRL-HQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTK 451 (546)
Q Consensus 373 ig~d~a~~~FEp~HGSAPd~~~~-~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~ 451 (546)
+|+++..+||||+||||||||+. .||||| +|||+|+|+|++|||+|+++|++|..+.++|++|++||..++++|++|+
T Consensus 298 ig~~~~~~~FEp~HGSApd~~~~~diaGk~-iANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G~~T~ 376 (410)
T PLN00103 298 VCPDGKTIEAEAAHGTVTRHYRVHQKGGET-STNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESGKMTK 376 (410)
T ss_pred cCCCCCcEEEeCCCCcCcccchhhhhcCCC-ccChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcCCCCc
Confidence 99886446899999999997766 389999 9999999999999999999998888899999999999999999999999
Q ss_pred chhcccCCCCCCCccccCHHHHHHHHHHHHHhh
Q 009041 452 DLAILVHGPKVSREFYLNTEEFIDAVATNLGAK 484 (546)
Q Consensus 452 DLg~~~~G~~~~~~~~asT~ef~daV~~~L~~~ 484 (546)
||+...+|+++.+++.++|+||+|+|+++|+++
T Consensus 377 Dl~~~~~gg~~~~~~~~~T~e~~daV~~~l~~~ 409 (410)
T PLN00103 377 DLALLIHGPKVSRDQYLNTEEFIDAVAEELKAR 409 (410)
T ss_pred ccccccCCCcccCCCCcCHHHHHHHHHHHHHhh
Confidence 995211133333445589999999999999765
No 13
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=9.1e-100 Score=783.33 Aligned_cols=321 Identities=23% Similarity=0.241 Sum_probs=299.6
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchhhcc
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~e~~ 165 (546)
++|++||||||||||+++++++|.+.+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~-------- 73 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA-------- 73 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc--------
Confidence 479999999999999999999998778999999999999999999999999999999999999999999983
Q ss_pred ccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC-CCcEEEEeeccCCccccccceecCCCceeeeecCCCCCCCcc
Q 009041 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (546)
Q Consensus 166 l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~-~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~~~~ 244 (546)
.+.|++||++||||||+|| +|++||+++++ ++|+|||||||||+|+|.++...
T Consensus 74 -----~~~~~~LR~~ldlyanvRP--~r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~------------------- 127 (330)
T PRK14025 74 -----ADVIVKLRRILDTYANVRP--VKSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIA------------------- 127 (330)
T ss_pred -----cchHHHHHHHcCCeEEEEE--eecCCCCCCccCCcCEEEEEECCCceecCcccccC-------------------
Confidence 2569999999999999999 57789887664 69999999999999999876421
Q ss_pred cccccccCCceEE-EEeecHHHHHHHHHHHHHHHHcC----C-CCEEEEeCCCccccchhHHHHHHHHHHHhhhcccccc
Q 009041 245 LDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSK----K-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (546)
Q Consensus 245 ~~v~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r----k-kkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~ 318 (546)
++++. .+++||++++||+|+||+||++| + ++||++||+||||.+||||+++|+||| ++||
T Consensus 128 --------~~~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva-~~yp----- 193 (330)
T PRK14025 128 --------DGVTVATRVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEVA-KEYP----- 193 (330)
T ss_pred --------CCceEEeEeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHHH-hhCC-----
Confidence 23444 47899999999999999999999 4 579999999999999999999999999 7999
Q ss_pred CCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcc
Q 009041 319 HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQ 397 (546)
Q Consensus 319 ~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~I 397 (546)
+|+++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ .+|||+|||||| |
T Consensus 194 -~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~HGSAPd-----i 265 (330)
T PRK14025 194 -DIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLAPSANIGDKY--GLFEPVHGSAPD-----I 265 (330)
T ss_pred -CeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCcccceeeCCCc--ceeEcCCCCchh-----h
Confidence 99999999999999999999999 99999999999999999999999999999999876 589999999999 9
Q ss_pred cCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHH
Q 009041 398 KGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAV 477 (546)
Q Consensus 398 AGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV 477 (546)
|||| +|||+|+|||++|||+|+| +.++|++|++||.+++++|++|+||| | .++|+||+|+|
T Consensus 266 AGk~-iANP~a~IlS~ammL~~lG-------~~~~A~~I~~Av~~vl~~g~~T~DlG----G-------~~~T~e~~~av 326 (330)
T PRK14025 266 AGKG-IANPTATILTAVLMLRHLG-------ENEEADKVEKALEEVLALGLTTPDLG----G-------NLSTMEMAEEV 326 (330)
T ss_pred CCCC-CcCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHHHHH
Confidence 9999 9999999999999999999 67899999999999999999999998 8 69999999999
Q ss_pred HHHH
Q 009041 478 ATNL 481 (546)
Q Consensus 478 ~~~L 481 (546)
+++|
T Consensus 327 ~~~~ 330 (330)
T PRK14025 327 AKRV 330 (330)
T ss_pred HHhC
Confidence 9874
No 14
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-99 Score=784.20 Aligned_cols=336 Identities=17% Similarity=0.188 Sum_probs=301.8
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC-----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccc
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~-----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~ 160 (546)
++|++||||||||||+++++++|.+. +++++|+++++|.++++++|+++|++++++||++|++||||+++|.+..
T Consensus 4 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~~ 83 (352)
T PRK08194 4 FKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLVP 83 (352)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcCC
Confidence 67999999999999999999988532 5899999999999999999999999999999999999999999996321
Q ss_pred hhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCC----CCCcEEEEeeccCCccccccceecCCCceeeeecC
Q 009041 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG----WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDP 236 (546)
Q Consensus 161 ~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~----~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~ 236 (546)
. . ...++++++||++||||||+|| +|.+|++.++ .++|+|||||||||+|+|.++... +
T Consensus 84 --~--~-~~~~~~~l~LR~~ldLyaNvRP--~k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~-~--------- 146 (352)
T PRK08194 84 --D--H-ISLWGLLIKIRREFEQVINIRP--AKQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIH-R--------- 146 (352)
T ss_pred --C--C-CCchhhHHHHHHHcCCEEEEEe--eecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCcccc-C---------
Confidence 0 0 0123459999999999999999 4678887655 369999999999999999864321 1
Q ss_pred CCCCCCcccccccccCCce-EEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccc
Q 009041 237 EDGTGPVELDVYNFKGPGI-ALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQK 315 (546)
Q Consensus 237 ~~G~~~~~~~v~~~~~~~v-a~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~ 315 (546)
|. .++ ...+++||+++|||+|+||+||++|+++||+|||+|||+.+||||+++|+||| ++||
T Consensus 147 --g~------------~~~a~~~~~~Tr~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~~~~eva-~~yp-- 209 (352)
T PRK08194 147 --GE------------DEIAIQNAVFTRKGTERAMRYAFELAAKRRKHVTSATKSNGIVHSMPFWDEVFQEVG-KDYP-- 209 (352)
T ss_pred --Cc------------cceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHHHHHHHH-hhCC--
Confidence 10 123 44589999999999999999999998899999999999999999999999999 7999
Q ss_pred cccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCC-ceeecccccccccch
Q 009041 316 FEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHF 393 (546)
Q Consensus 316 f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a-~~~FEp~HGSAPd~~ 393 (546)
+|+++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++. .++|||+||||||
T Consensus 210 ----~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~HGSAPd-- 283 (352)
T PRK08194 210 ----EIETDSQHIDALAAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAPD-- 283 (352)
T ss_pred ----CceeeehhHHHHHHHHhhChhhCcEEEEccchHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCCCCchh--
Confidence 99999999999999999999999 999999999999999999999999999999997642 3699999999999
Q ss_pred hhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHH
Q 009041 394 RLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEF 473 (546)
Q Consensus 394 ~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef 473 (546)
||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++|.+|+||| | .++|+||
T Consensus 284 ---iAGk~-iANP~a~IlS~amML~~lg-------~~~~A~~i~~Av~~~l~~g~~T~DlG----G-------~~~T~e~ 341 (352)
T PRK08194 284 ---IAGKG-IANPIGQIWTAKLMLDHFG-------EEELGSHLLDVIEDVTEDGIKTPDIG----G-------RATTDEV 341 (352)
T ss_pred ---hCCCC-cCCcHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHcCCCcCcCC----C-------CcCHHHH
Confidence 99999 9999999999999999999 67899999999999999999999998 8 6999999
Q ss_pred HHHHHHHHHh
Q 009041 474 IDAVATNLGA 483 (546)
Q Consensus 474 ~daV~~~L~~ 483 (546)
+++|+++|++
T Consensus 342 ~~ai~~~l~~ 351 (352)
T PRK08194 342 TDEIISRLKK 351 (352)
T ss_pred HHHHHHHHhh
Confidence 9999999943
No 15
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=2.6e-98 Score=779.05 Aligned_cols=335 Identities=19% Similarity=0.209 Sum_probs=300.0
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC-----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccc
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~-----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~ 160 (546)
++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+..
T Consensus 4 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~~ 83 (352)
T TIGR02089 4 YRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALVP 83 (352)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCCC
Confidence 67999999999999999999988532 4899999999999999999999999999999999999999999995321
Q ss_pred hhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCC------CCCcEEEEeeccCCccccccceecCCCceeeee
Q 009041 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG------WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVF 234 (546)
Q Consensus 161 ~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~------~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~ 234 (546)
. ....+++|++|||+||||+|+||+ |.+|++.++ .++|+|||||||||+|+|.++... +|
T Consensus 84 --~---~~~~~~~~l~LRk~ldLyaNvRP~--~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~-~~------ 149 (352)
T TIGR02089 84 --D---HISLWGLLLKIRREFDQYANVRPA--KLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIH-RG------ 149 (352)
T ss_pred --C---ccCchhhHHHHHHHcCCeEEEEEe--ecCCCCCCccccccCCCCCEEEEEecCCccccccccccc-CC------
Confidence 0 011245699999999999999995 667876554 369999999999999999864321 11
Q ss_pred cCCCCCCCcccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhc
Q 009041 235 DPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (546)
Q Consensus 235 ~~~~G~~~~~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP 313 (546)
. ..+++ ..+++||+++|||+|+||+||++|++|||++||+|||+.+||||+++|+||+ ++||
T Consensus 150 -----~-----------~~~~a~~~~~~tr~~~eRi~r~Af~~A~~rr~kVt~v~KaNvl~~t~~lf~~~~~eva-~~yp 212 (352)
T TIGR02089 150 -----T-----------DEEVATQNAIFTRKGVERIMRFAFELAQKRRKHLTSATKSNGIRHSMPFWDEVFAEVA-AEYP 212 (352)
T ss_pred -----c-----------cceeEEEeEEecHHHHHHHHHHHHHHHHHcCCCEEEEeCCcchhhhhHHHHHHHHHHH-hhCC
Confidence 0 12344 4589999999999999999999998899999999999999999999999998 7999
Q ss_pred cccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCC-ceeeccccccccc
Q 009041 314 QKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTR 391 (546)
Q Consensus 314 ~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a-~~~FEp~HGSAPd 391 (546)
+|+++|+|||+++||||++|++| ||||+|||||||||++|+++||+||+||+|||+++. .+||||+||||||
T Consensus 213 ------~v~~~~~~vD~~~~~lv~~P~~fDVivt~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~HGSAPd 286 (352)
T TIGR02089 213 ------DVEWDSYHIDALAARFVLKPETFDVIVASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAPD 286 (352)
T ss_pred ------CceEeeehHHHHHHHHhcChhhCcEEEecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCCCCchh
Confidence 99999999999999999999999 999999999999999999999999999999997642 3699999999999
Q ss_pred chhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHH
Q 009041 392 HFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTE 471 (546)
Q Consensus 392 ~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ 471 (546)
||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++|++|+||| | .++|+
T Consensus 287 -----iAGk~-iANP~a~Ils~amML~~lg-------~~~~A~~I~~Av~~~l~~g~~T~DlG----G-------~~sT~ 342 (352)
T TIGR02089 287 -----IAGKG-IANPIGAIWTAAMMLEHLG-------EKEAGAKIMDAIERVTAAGILTPDVG----G-------KATTS 342 (352)
T ss_pred -----hcCCC-ccCcHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHcCCccCCCC----C-------CcCHH
Confidence 99999 9999999999999999999 67899999999999999999999998 8 68999
Q ss_pred HHHHHHHHHH
Q 009041 472 EFIDAVATNL 481 (546)
Q Consensus 472 ef~daV~~~L 481 (546)
||+|+|+++|
T Consensus 343 e~~~ai~~~l 352 (352)
T TIGR02089 343 EVTEAVCNAL 352 (352)
T ss_pred HHHHHHHhhC
Confidence 9999999875
No 16
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=2.3e-98 Score=788.40 Aligned_cols=345 Identities=18% Similarity=0.180 Sum_probs=304.2
Q ss_pred ecccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCcc
Q 009041 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (546)
Q Consensus 84 v~~~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~ 159 (546)
+.++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.++
T Consensus 45 ~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~ 124 (409)
T PLN02329 45 KRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWD 124 (409)
T ss_pred ceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCC
Confidence 3578999999999999999999988532 589999999999999999999999999999999999999999999643
Q ss_pred chhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCC--C------CCCcEEEEeeccCCccccccceecCCCcee
Q 009041 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP--G------WKKPICIGRHAFGDQYRATDTVIKGPGKLK 231 (546)
Q Consensus 160 ~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~--~------~~vDiVIvREntEG~Y~g~e~~~~~~g~~~ 231 (546)
... ..+. ..+++++||++||||+|+||+ |.+|++.. + .++|+|||||||||+|+|.++.....
T Consensus 125 ~~~-~~~~--~e~~ll~LRk~ldLyaNvRPv--r~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~~---- 195 (409)
T PLN02329 125 KNE-KHLR--PEMALFYLRRDLKVFANLRPA--TVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITIN---- 195 (409)
T ss_pred CCc-cccc--ccccHHHHHHHcCCeEeeeee--eccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceecc----
Confidence 210 0000 125799999999999999995 66777653 1 36999999999999999986432100
Q ss_pred eeecCCCCCCCcccccccccCCceEE-EEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHh
Q 009041 232 MVFDPEDGTGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE 310 (546)
Q Consensus 232 ~~~~~~~G~~~~~~~v~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~ 310 (546)
+ . +.+++. .++|||+++|||+|+||+||++|+++||++||+|||+ ++|||+++|+||| +
T Consensus 196 ----~-~-------------~~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaNVl~-t~~lf~~~~~evA-~ 255 (409)
T PLN02329 196 ----E-N-------------GEEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLD-ASILWRKRVTALA-S 255 (409)
T ss_pred ----c-C-------------CceeEEEeEEecHHHHHHHHHHHHHHHHHcCCeEEEEECCCCcc-chHHHHHHHHHHH-h
Confidence 0 0 123444 4889999999999999999999988999999999999 9999999999999 7
Q ss_pred hhccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeeccccccc
Q 009041 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTV 389 (546)
Q Consensus 311 eYP~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSA 389 (546)
+|| +|+++|++||+++||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .++|||+||||
T Consensus 256 eyP------dV~~~~~~VDa~a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~-~a~FEpvHGSA 328 (409)
T PLN02329 256 EYP------DVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESG-PGLFEPIHGSA 328 (409)
T ss_pred hCC------CcccchhHHHHHHHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccCceeecCCCC-ceeeeccCCCc
Confidence 999 99999999999999999999999 99999999999999999999999999999999876 36899999999
Q ss_pred ccchhhcccCCCCccCchhHHHHHHHHHHh-hhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcch---hcccCCCCCCCc
Q 009041 390 TRHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDL---AILVHGPKVSRE 465 (546)
Q Consensus 390 Pd~~~~~IAGK~tiANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DL---g~~~~G~~~~~~ 465 (546)
|| ||||| +|||+|+|||++|||+| +| +.+.|++|++||.+++++|.+|+|| | |.
T Consensus 329 Pd-----IAGk~-iANP~A~ILS~amML~~~Lg-------~~~~A~~I~~AV~~vl~~g~~T~Dl~~~G----g~----- 386 (409)
T PLN02329 329 PD-----IAGQD-KANPLATILSAAMLLKYGLG-------EEKAAKRIEDAVVDALNKGFRTGDIYSPG----NK----- 386 (409)
T ss_pred hh-----hcCCc-ccChHHHHHHHHHHHhhhCC-------CHHHHHHHHHHHHHHHHcCCcCcccccCC----CC-----
Confidence 99 99999 99999999999999999 99 6789999999999999999999999 5 51
Q ss_pred cccCHHHHHHHHHHHHHhhhcC
Q 009041 466 FYLNTEEFIDAVATNLGAKLRE 487 (546)
Q Consensus 466 ~~asT~ef~daV~~~L~~~~~~ 487 (546)
.++|+||+|+|+++|+.+++.
T Consensus 387 -~~~T~e~~daIi~~l~~~~~~ 407 (409)
T PLN02329 387 -LVGCKEMGEEVLKSVDSKVPA 407 (409)
T ss_pred -ccCHHHHHHHHHHHHHhhCCC
Confidence 389999999999999887764
No 17
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=7.6e-98 Score=786.94 Aligned_cols=353 Identities=22% Similarity=0.234 Sum_probs=306.4
Q ss_pred EEEEcCCccHHHHHHHHHHHHhc--C-----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccc
Q 009041 88 IVEMDGDEMTRIIWQMIKDKLIF--P-----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (546)
Q Consensus 88 I~vlpGDGIGpEI~~~~~~~l~~--~-----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~ 160 (546)
|++||||||||||+++++++|.+ . +++|+|+++++|.++++++|+++|++++++|+++|++||||++||.+.
T Consensus 26 I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~~~- 104 (412)
T PRK06451 26 ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPIGK- 104 (412)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCc-
Confidence 99999999999999999998852 1 158999999999999999999999999999999999999999999532
Q ss_pred hhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC----CCcEEEEeeccCCccccccceecCCCcee-eeec
Q 009041 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLK-MVFD 235 (546)
Q Consensus 161 ~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~----~vDiVIvREntEG~Y~g~e~~~~~~g~~~-~~~~ 235 (546)
.|+|+|++||++||||||+|| +|.+||+.+++ ++|||||||||||+|+|.++....++..+ ..|.
T Consensus 105 --------~~~s~~l~LRk~ldLyaNvRP--vk~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~ 174 (412)
T PRK06451 105 --------GWKSINVAIRLMLDLYANIRP--VKYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFL 174 (412)
T ss_pred --------CCcChhHHHHHHcCCeEeece--eecCCCCCCcccCcCCccEEEEEeccCCeeecccccccccccccccccc
Confidence 388999999999999999999 47788887654 69999999999999999986532111100 0111
Q ss_pred CC-CCCCCcccccccccCCceEE-EEeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHHHHHhhh
Q 009041 236 PE-DGTGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (546)
Q Consensus 236 ~~-~G~~~~~~~v~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~eVa~~eY 312 (546)
.+ .|.. + ..+++. .+++|+++++||+|+||+||++|+ ++||+|||+||||.+||+|+++|+||++++|
T Consensus 175 ~~~~~~~-----~----~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~ey 245 (412)
T PRK06451 175 RKELGVE-----V----EDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEF 245 (412)
T ss_pred ccccccc-----c----ccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhC
Confidence 11 0100 0 022333 478999999999999999999996 6899999999999999999999999995589
Q ss_pred cc--------------ccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCC
Q 009041 313 RQ--------------KFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDG 377 (546)
Q Consensus 313 P~--------------~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~ 377 (546)
|+ +|++++|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++
T Consensus 246 pd~~~~~~~~~~~y~~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~~ 325 (412)
T PRK06451 246 RDYVVTEEEVTKNYNGVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDTG 325 (412)
T ss_pred CcccccccchhhccccccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCC
Confidence 85 6777889999999999999999999999 99999999999999999999999999999999887
Q ss_pred CceeecccccccccchhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhccc
Q 009041 378 KTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILV 457 (546)
Q Consensus 378 a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~ 457 (546)
.+|||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++|++|+||+.+.
T Consensus 326 --alFEpvHGSAPd-----iAGk~-iANP~a~IlS~amML~~lg-------~~~~A~~I~~Av~~vl~~G~~T~Dl~~~~ 390 (412)
T PRK06451 326 --GMFEAIHGTAPK-----YAGKN-VANPTGIIKGGELMLRFMG-------WDKAADLIDKAIMESIKQKKVTQDLARFM 390 (412)
T ss_pred --ceeECCCCCccc-----cCCCC-CcCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCcCccccccC
Confidence 489999999999 99999 9999999999999999999 68899999999999999999999995111
Q ss_pred CCCCCCCccccCHHHHHHHHHHHH
Q 009041 458 HGPKVSREFYLNTEEFIDAVATNL 481 (546)
Q Consensus 458 ~G~~~~~~~~asT~ef~daV~~~L 481 (546)
+| +.++|+||+|+|+++|
T Consensus 391 gg------~~~~T~e~~daI~~~l 408 (412)
T PRK06451 391 GV------RALSTTEYTDELISII 408 (412)
T ss_pred CC------CccCHHHHHHHHHHHH
Confidence 14 1489999999999998
No 18
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=1.7e-97 Score=768.65 Aligned_cols=324 Identities=21% Similarity=0.257 Sum_probs=298.2
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchhhcc
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~e~~ 165 (546)
++|++|||||||||||++++++|.+.+++++|+++++|++ +++|+++|++++++|+++|++||||+++|...+
T Consensus 4 ~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~~----- 76 (333)
T TIGR00175 4 YTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGKG----- 76 (333)
T ss_pred EEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCccccc-----
Confidence 5799999999999999999999987789999999999987 578999999999999999999999999995321
Q ss_pred ccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC-CCcEEEEeeccCCccccccceecCCCceeeeecCCCCCCCcc
Q 009041 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (546)
Q Consensus 166 l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~-~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~~~~ 244 (546)
.++|+|++||++||||+|+|| +|++||+.+++ ++|||||||||||+|+|.++...
T Consensus 77 ---~~~s~~~~lR~~ldlyanvRP--~k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~------------------- 132 (333)
T TIGR00175 77 ---GHRSLNVALRKELDLYANVVH--CKSLPGFKTRHEDVDIVIIRENTEGEYSGLEHESV------------------- 132 (333)
T ss_pred ---cccchhHHHHHHcCCEEEeEE--ecCCCCCCCCCCCcCEEEEEEeCCCcccceeEecc-------------------
Confidence 278999999999999999999 57899987664 69999999999999999875421
Q ss_pred cccccccCCceEEE-EeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCCeE
Q 009041 245 LDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIW 322 (546)
Q Consensus 245 ~~v~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI~ 322 (546)
++++.. +++||++++||+|+||+||++|+ +|||++||+||||.+||||+++|+||| ++|| +|+
T Consensus 133 --------~~~~~~~~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp------~v~ 197 (333)
T TIGR00175 133 --------PGVVESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREVA-KEYP------DIT 197 (333)
T ss_pred --------CCeEEEEEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHHH-HHCC------CCe
Confidence 244444 78999999999999999999996 569999999999999999999999999 6899 999
Q ss_pred EeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeeccc-ccccccchhhcccCC
Q 009041 323 YEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAA-HGTVTRHFRLHQKGQ 400 (546)
Q Consensus 323 ~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~-HGSAPd~~~~~IAGK 400 (546)
++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ .+|||+ |||||| ||||
T Consensus 198 ~~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~GslGl~pSanig~~~--a~fEp~~hGSApd-----iaGk 270 (333)
T TIGR00175 198 FESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGANIGRDY--AVFEPGVRHTGPD-----IAGQ 270 (333)
T ss_pred eeeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhcCCcccCceeEEcCCC--ceEeccCCCCchh-----hCCC
Confidence 99999999999999999999 99999999999999999999999999999999876 489995 599999 9999
Q ss_pred CCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcC-CCCcchhcccCCCCCCCccccCHHHHHHHHHH
Q 009041 401 ETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREFYLNTEEFIDAVAT 479 (546)
Q Consensus 401 ~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLg~~~~G~~~~~~~~asT~ef~daV~~ 479 (546)
| +|||+|+|||++|||+|+| +.++|++|++||.+++++| .+|+||| | .++|+||+|+|++
T Consensus 271 ~-iaNP~a~Ils~ammL~~lG-------~~~~a~~i~~Av~~~l~~G~~~T~DlG----G-------~~~T~e~~~ai~~ 331 (333)
T TIGR00175 271 N-IANPTALILSSVMMLNHLG-------LKEHADRIQKAVLSTIAEGKNRTKDLG----G-------TATTSDFTEAVIK 331 (333)
T ss_pred C-ccChHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCccChhcC----C-------CcCHHHHHHHHHh
Confidence 9 9999999999999999999 6789999999999999999 6999998 8 6999999999998
Q ss_pred HH
Q 009041 480 NL 481 (546)
Q Consensus 480 ~L 481 (546)
+|
T Consensus 332 ~l 333 (333)
T TIGR00175 332 RL 333 (333)
T ss_pred hC
Confidence 75
No 19
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=2.2e-97 Score=771.01 Aligned_cols=322 Identities=21% Similarity=0.259 Sum_probs=296.7
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchhhc
Q 009041 85 QNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEF 164 (546)
Q Consensus 85 ~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~e~ 164 (546)
.++|++||||||||||+++++++|.+.+++++|+++++|.+ |.++|++++++|+++|++||||+++|.+.+
T Consensus 30 ~~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~-----~~~lp~~~l~~~~~~da~L~Gavg~p~~~~---- 100 (360)
T PLN00123 30 PRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGD-----MKKVPEEVLESIRRNKVCLKGGLATPVGGG---- 100 (360)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCC-----CccCCHHHHHHHHHCCEEEEccccCCCCcC----
Confidence 36899999999999999999999987789999999999876 588999999999999999999999995432
Q ss_pred cccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC-CCcEEEEeeccCCccccccceecCCCceeeeecCCCCCCCc
Q 009041 165 GLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPV 243 (546)
Q Consensus 165 ~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~-~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~~~ 243 (546)
.+|+|+.||++||||||+|| +|.+||+.+++ ++|+|||||||||+|+|.++...
T Consensus 101 -----~~s~~l~LR~~ldLyaNvRP--~k~~pg~~~~~~~iD~viVREnteG~Y~g~~~~~~------------------ 155 (360)
T PLN00123 101 -----VSSLNVQLRKELDLFASLVN--CFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVV------------------ 155 (360)
T ss_pred -----ccchHHHHHHHcCCEEEEEE--eecCCCCCCccCCCCEEEEEeCCCceeccceeecC------------------
Confidence 56889999999999999999 57789987654 69999999999999999876421
Q ss_pred ccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCCe
Q 009041 244 ELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSI 321 (546)
Q Consensus 244 ~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI 321 (546)
++++ ...++||+++|||+|+||+||++|+ +|||++||+|||+.+||||+++|+||| ++|| +|
T Consensus 156 ---------~g~~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva-~eyP------dV 219 (360)
T PLN00123 156 ---------PGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVA-KKYP------GI 219 (360)
T ss_pred ---------CCceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHH-hhCC------Cc
Confidence 2344 4478999999999999999999984 689999999999999999999999999 7999 99
Q ss_pred EEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccc--ccc--ccchhhc
Q 009041 322 WYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH--GTV--TRHFRLH 396 (546)
Q Consensus 322 ~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~H--GSA--Pd~~~~~ 396 (546)
+++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .+|||+| ||| ||
T Consensus 220 ~~~~~~VDa~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~~--a~FEpvh~hGSA~~Pd----- 292 (360)
T PLN00123 220 KYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADH--AVFEQGASAGNVGNEK----- 292 (360)
T ss_pred eEeeeeHHHHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCCc--eEEEecccCCCcCCcc-----
Confidence 999999999999999999999 99999999999999999999999999999999885 5899977 999 99
Q ss_pred ccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcC-CCCcchhcccCCCCCCCccccCHHHHHH
Q 009041 397 QKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREFYLNTEEFID 475 (546)
Q Consensus 397 IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLg~~~~G~~~~~~~~asT~ef~d 475 (546)
||||| +|||+|+|+|++|||+|+| +.++|++|++||.+++++| .+|+||| | .++|+||+|
T Consensus 293 IAGk~-iANP~a~IlS~amML~~lG-------~~~~A~~I~~AV~~~l~~G~~~T~DlG----G-------~~sT~e~~~ 353 (360)
T PLN00123 293 LVEQK-KANPVALLLSSAMMLRHLQ-------FPSFADRLETAVKRVIAEGKYRTKDLG----G-------SSTTQEVVD 353 (360)
T ss_pred ccCCC-ccChHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHH
Confidence 99999 9999999999999999999 6789999999999999999 7999998 8 699999999
Q ss_pred HHHHHHH
Q 009041 476 AVATNLG 482 (546)
Q Consensus 476 aV~~~L~ 482 (546)
+|+++|.
T Consensus 354 ai~~~l~ 360 (360)
T PLN00123 354 AVIANLD 360 (360)
T ss_pred HHHHhhC
Confidence 9999873
No 20
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=2.1e-97 Score=784.09 Aligned_cols=358 Identities=21% Similarity=0.203 Sum_probs=305.6
Q ss_pred EEEEcCCccHHHHHHHHHHHHhc--C-----CCceeEEEEecchhhhhhcCC--CCcHHHHHHHHhcCeEEEecccCCCc
Q 009041 88 IVEMDGDEMTRIIWQMIKDKLIF--P-----YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 158 (546)
Q Consensus 88 I~vlpGDGIGpEI~~~~~~~l~~--~-----~~~i~~~~~dlG~~~~d~tg~--~lp~etleaik~~daiLkGav~tP~~ 158 (546)
|++||||||||||+++++++|.+ . +++|+|+++++|.++++++|+ ++|++++++|+++|++||||++||.+
T Consensus 22 I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp~~ 101 (409)
T PRK07006 22 IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTPVG 101 (409)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 99999999999999999998852 1 159999999999999999999 99999999999999999999999953
Q ss_pred cchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCC----CCCcEEEEeeccCCccccccceecCCC-ceeee
Q 009041 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG----WKKPICIGRHAFGDQYRATDTVIKGPG-KLKMV 233 (546)
Q Consensus 159 ~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~----~~vDiVIvREntEG~Y~g~e~~~~~~g-~~~~~ 233 (546)
. .++|+|++||++||||||+||+ |.+|++.++ .++|||||||||||+|+|.++....++ +..+.
T Consensus 102 ~---------~~~s~~l~LR~~ldLyaNvRPv--k~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~ 170 (409)
T PRK07006 102 G---------GIRSLNVALRQELDLYVCLRPV--RYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIK 170 (409)
T ss_pred c---------CccChHHHHHHHcCCEEEEEEE--ecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeee
Confidence 3 2678999999999999999995 667776654 269999999999999999986432221 12222
Q ss_pred ecCCCCCCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHHHHHhhh
Q 009041 234 FDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (546)
Q Consensus 234 ~~~~~G~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~eVa~~eY 312 (546)
|.+... .++++++........+++|++++|||+|+||+||++|+ ++||++||+||||.+||||++++.|||+++|
T Consensus 171 ~~~~~~----~~~~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey 246 (409)
T PRK07006 171 FLQEEM----GVKKIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEF 246 (409)
T ss_pred cccccc----CcccccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHh
Confidence 222111 11222232222334578999999999999999999995 6899999999999999999998889996589
Q ss_pred cccccc-------------CCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCC
Q 009041 313 RQKFEE-------------HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK 378 (546)
Q Consensus 313 P~~f~~-------------~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a 378 (546)
|++|++ ++|+++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~~- 325 (409)
T PRK07006 247 GDELIDGGPWDKIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDGH- 325 (409)
T ss_pred hhhhhccccccccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCCc-
Confidence 777765 599999999999999999999999 99999999999999999999999999999999764
Q ss_pred ceeecccccccccchhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhccc-
Q 009041 379 TLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILV- 457 (546)
Q Consensus 379 ~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~- 457 (546)
+||||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++|++|+|||+..
T Consensus 326 -a~FEpvHGSAPd-----iAGk~-iANP~a~IlS~amML~~lG-------~~~~A~~Ie~Av~~~l~~G~~T~Dl~~~~~ 391 (409)
T PRK07006 326 -AIFEATHGTAPK-----YAGLD-KVNPGSVILSAEMMLRHMG-------WTEAADLIIKSMEKTIASKTVTYDFARLME 391 (409)
T ss_pred -eEEECCCCcchh-----hCCCC-CcChHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHhcCCccccccccCC
Confidence 699999999999 99999 9999999999999999999 67899999999999999999999995211
Q ss_pred CCCCCCCccccCHHHHHHHHHHHH
Q 009041 458 HGPKVSREFYLNTEEFIDAVATNL 481 (546)
Q Consensus 458 ~G~~~~~~~~asT~ef~daV~~~L 481 (546)
+| +.++|+||+|+|+++|
T Consensus 392 gg------~~~~T~e~~daI~~~l 409 (409)
T PRK07006 392 GA------TEVKCSEFGDALIKNM 409 (409)
T ss_pred CC------cccCHHHHHHHHHhhC
Confidence 13 1489999999999875
No 21
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=5.9e-97 Score=783.04 Aligned_cols=358 Identities=21% Similarity=0.218 Sum_probs=304.5
Q ss_pred EEEEcCCccHHHHHHHHHHHHhc--C--C---CceeEEEEecchhhhhhcC--CCCcHHHHHHHHhcCeEEEecccCCCc
Q 009041 88 IVEMDGDEMTRIIWQMIKDKLIF--P--Y---LDLDIKYYDLGILNRDATD--DKVTVESAEATLKYNVAIKCATITPDE 158 (546)
Q Consensus 88 I~vlpGDGIGpEI~~~~~~~l~~--~--~---~~i~~~~~dlG~~~~d~tg--~~lp~etleaik~~daiLkGav~tP~~ 158 (546)
|++||||||||||+++++++|.+ . . ++|+|+++++|.++++++| +++|++++++|+++|++||||++||.+
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 99999999999999999998852 1 1 5999999999999999999 999999999999999999999999953
Q ss_pred cchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC----CCcEEEEeeccCCccccccceecCCCceee-e
Q 009041 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKM-V 233 (546)
Q Consensus 159 ~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~----~vDiVIvREntEG~Y~g~e~~~~~~g~~~~-~ 233 (546)
. +|+|+|+.||++||||||+||+ +.+|++.+++ ++|||||||||||+|+|.++...+++..++ .
T Consensus 109 ~---------~~~s~~l~LR~~ldLyaNvRP~--k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~ 177 (416)
T TIGR00183 109 G---------GIRSLNVALRQELDLYVCLRPV--RYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIR 177 (416)
T ss_pred c---------cccCcHHHHHHHcCCEEEEeEe--ecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeec
Confidence 2 3789999999999999999995 6677765542 699999999999999999865432222222 1
Q ss_pred ecCCCCCCCcccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHHHHHhh
Q 009041 234 FDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (546)
Q Consensus 234 ~~~~~G~~~~~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~eVa~~e 311 (546)
|.+..++ .....|. .+++ ..+++|+++++||+|+||+||++|+ ++||++||+||||.+||+|+++|.|||+++
T Consensus 178 ~~~~~~g----~~~~~~~-~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~e 252 (416)
T TIGR00183 178 FLQNELG----VKKIRFP-EDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKE 252 (416)
T ss_pred ccccccC----ccccccc-cccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 2221111 0011111 2334 4578999999999999999999994 789999999999999999999999999547
Q ss_pred hcccccc-------------CCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCC
Q 009041 312 WRQKFEE-------------HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDG 377 (546)
Q Consensus 312 YP~~f~~-------------~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~ 377 (546)
||.+|+. ++|+++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++.
T Consensus 253 y~~~~~~~~lw~~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~~ 332 (416)
T TIGR00183 253 FGAECITWGLWDKYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDEI 332 (416)
T ss_pred HhHhhhhccccccccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCc
Confidence 9666554 289999999999999999999999 99999999999999999999999999999999774
Q ss_pred CceeecccccccccchhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhccc
Q 009041 378 KTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILV 457 (546)
Q Consensus 378 a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~ 457 (546)
++|||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++|++|+||+...
T Consensus 333 --alFEp~HGSAPd-----iAGk~-iANP~a~IlS~amML~~lg-------~~~~A~~Ie~AV~~~l~~G~~T~Dl~~~~ 397 (416)
T TIGR00183 333 --GIFEATHGTAPK-----YAGQD-KVNPGSIILSGEMMLEHMG-------WKEAADLIKKAMEKAIASKIVTYDFARLM 397 (416)
T ss_pred --eEEECCCCCchh-----hcCCC-CCCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCccccccccc
Confidence 699999999999 99999 9999999999999999999 67899999999999999999999994211
Q ss_pred CCCCCCCccccCHHHHHHHHHHHH
Q 009041 458 HGPKVSREFYLNTEEFIDAVATNL 481 (546)
Q Consensus 458 ~G~~~~~~~~asT~ef~daV~~~L 481 (546)
+|. +.++|+||+|+|+++|
T Consensus 398 gg~-----~~~~T~e~~daI~~~l 416 (416)
T TIGR00183 398 DGA-----KEVKCSEFAEAIIENM 416 (416)
T ss_pred CCC-----cccCHHHHHHHHHhhC
Confidence 141 1489999999999875
No 22
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=7.2e-97 Score=769.27 Aligned_cols=338 Identities=21% Similarity=0.201 Sum_probs=301.8
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccc
Q 009041 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (546)
Q Consensus 85 ~~~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~ 160 (546)
.++|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+.+|++++++|+++|++||||+++|.+..
T Consensus 2 ~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~ 81 (358)
T PRK00772 2 TYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDN 81 (358)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCC
Confidence 368999999999999999999988532 6899999999999999999999999999999999999999999996432
Q ss_pred hhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCC--CC------CCcEEEEeeccCCccccccceecCCCceee
Q 009041 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP--GW------KKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (546)
Q Consensus 161 ~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~--~~------~vDiVIvREntEG~Y~g~e~~~~~~g~~~~ 232 (546)
++. .+ ...+| |++||++||||+|+||+ |++||+.+ +. ++|+|||||||||+|+|.++... ++
T Consensus 82 ~~~-~~-~~~~~-~~~LR~~ldlyanvRP~--r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~-~~---- 151 (358)
T PRK00772 82 LPP-DV-RPERG-LLALRKELGLFANLRPA--KLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGRE-GL---- 151 (358)
T ss_pred CCc-cC-CChhh-HHHHHHHcCCeEEEeEe--ecCCCCCCcCCCcccccCCccEEEEecccCCeecCCccccc-CC----
Confidence 110 01 12345 99999999999999994 67787653 21 69999999999999999875431 11
Q ss_pred eecCCCCCCCcccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhh
Q 009041 233 VFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (546)
Q Consensus 233 ~~~~~~G~~~~~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~e 311 (546)
. +.+++ ...++||++++||+|+||+||++|+++||++||+|||| ++|+|+++|+||| ++
T Consensus 152 -------~-----------~~~~a~~~~~iTr~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~~glf~~~~~eva-~e 211 (358)
T PRK00772 152 -------G-----------GEERAFDTMVYTREEIERIARVAFELARKRRKKVTSVDKANVLE-SSRLWREVVTEVA-KE 211 (358)
T ss_pred -------C-----------CceeEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECccccc-cchHHHHHHHHHH-hH
Confidence 0 12344 45789999999999999999999988999999999999 8999999999999 69
Q ss_pred hccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccc
Q 009041 312 WRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVT 390 (546)
Q Consensus 312 YP~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAP 390 (546)
|| +|+++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|||+++ ..+|||+|||||
T Consensus 212 yp------~i~~~~~~vDa~~~~lv~~P~~fDViv~~NlfGDIlSDlaa~l~GglGl~psanig~~~-~a~FEp~HGSAp 284 (358)
T PRK00772 212 YP------DVELSHMYVDNAAMQLVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSASLGESG-PGLYEPIHGSAP 284 (358)
T ss_pred CC------CceEEEEeHHHHHHHHhhCcccCeEEeecCcccccccHHHHHhcCCCCCCcceEeCCCC-ceeeecCCCchh
Confidence 99 99999999999999999999999 99999999999999999999999999999999886 369999999999
Q ss_pred cchhhcccCCCCccCchhHHHHHHHHHHh-hhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcch---hcccCCCCCCCcc
Q 009041 391 RHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDL---AILVHGPKVSREF 466 (546)
Q Consensus 391 d~~~~~IAGK~tiANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DL---g~~~~G~~~~~~~ 466 (546)
| ||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|++|+|| | |
T Consensus 285 d-----iAGk~-~aNP~a~Ils~ammL~~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dl~~~g----g------- 340 (358)
T PRK00772 285 D-----IAGKG-IANPIATILSAAMMLRYSLG-------LEEAADAIEAAVEKVLAQGYRTADIAEGG----G------- 340 (358)
T ss_pred h-----hcCCC-CcCCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcCCcCcccccCC----C-------
Confidence 9 99999 99999999999999999 98 6889999999999999999999999 6 6
Q ss_pred ccCHHHHHHHHHHHHHh
Q 009041 467 YLNTEEFIDAVATNLGA 483 (546)
Q Consensus 467 ~asT~ef~daV~~~L~~ 483 (546)
.++|+||+|+|+++|.+
T Consensus 341 ~~~T~e~~~av~~~l~~ 357 (358)
T PRK00772 341 KVSTSEMGDAILAALAE 357 (358)
T ss_pred CcCHHHHHHHHHHHhhc
Confidence 69999999999999954
No 23
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=8e-97 Score=767.13 Aligned_cols=334 Identities=22% Similarity=0.193 Sum_probs=296.2
Q ss_pred cEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchh
Q 009041 87 PIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (546)
Q Consensus 87 ~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~ 162 (546)
+|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+.+|++++++|+++|++||||+++|.+....
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5899999999999999999988532 689999999999999999999999999999999999999999999643100
Q ss_pred hccccccCCCchHHHHHhcCcEEEeeecccccCCCCCC--C------CCCcEEEEeeccCCccccccceecCCCceeeee
Q 009041 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP--G------WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVF 234 (546)
Q Consensus 163 e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~--~------~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~ 234 (546)
... ..+.+ |++||++||||+|+||| |++||+.. + .++|+|||||||||+|+|.++.....
T Consensus 81 -~~~-~~~~~-~~~LR~~ldlyanvRP~--r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~------- 148 (349)
T TIGR00169 81 -RDQ-RPEQG-LLKLRKSLDLFANLRPA--KVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGA------- 148 (349)
T ss_pred -ccc-cchhh-HHHHHHHcCCeEEEEEe--eccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCC-------
Confidence 000 01233 99999999999999995 66777642 1 36999999999999999987532111
Q ss_pred cCCCCCCCcccccccccCCceEE-EEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhc
Q 009041 235 DPEDGTGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (546)
Q Consensus 235 ~~~~G~~~~~~~v~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP 313 (546)
+ .++++. ..++||+++|||+|+||+||++|+++||++||+|||| ++|+|+++|+||+ ++||
T Consensus 149 ----~------------~~~~a~~~~~~Tr~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk-t~glf~~~~~eva-~~yP 210 (349)
T TIGR00169 149 ----G------------GEGEAWDTEVYTKPEIERIARVAFEMARKRRKKVTSVDKANVLE-SSRLWRKTVEEIA-KEYP 210 (349)
T ss_pred ----C------------CcceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECCcccc-hhHHHHHHHHHHH-hhCC
Confidence 0 124444 4789999999999999999999988999999999999 9999999999999 7999
Q ss_pred cccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccc
Q 009041 314 QKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRH 392 (546)
Q Consensus 314 ~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~ 392 (546)
+|+++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ..||||+||||||
T Consensus 211 ------~I~~~~~~vDa~~~~Lv~~P~~fDViv~~NlfGDILSDlaa~l~GglGlapSanig~~~-~a~FEp~HGSAPd- 282 (349)
T TIGR00169 211 ------DVELEHQYIDNAAMQLVKSPTQFDVVVTGNIFGDILSDEASVIPGSLGMLPSASLGSDG-FGLFEPVHGSAPD- 282 (349)
T ss_pred ------CceEEeeeHHHHHHHHHhCccCceEEEEcCcccchhhHHHHHhcCCCCCCceEEECCCC-CEEEECCCCChhH-
Confidence 99999999999999999999999 99999999999999999999999999999999775 3699999999999
Q ss_pred hhhcccCCCCccCchhHHHHHHHHHHh-hhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHH
Q 009041 393 FRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTE 471 (546)
Q Consensus 393 ~~~~IAGK~tiANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ 471 (546)
||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|.+|+||| | .++|+
T Consensus 283 ----iAGk~-iANP~a~IlS~amML~~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dlg----G-------~~~t~ 339 (349)
T TIGR00169 283 ----IAGKG-IANPIAQILSAAMMLRYSFN-------LEEAADAIEAAVKKVLAEGYRTPDLG----S-------SATTE 339 (349)
T ss_pred ----hcCCC-CCChHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHcCCCccccC----C-------CcchH
Confidence 99999 99999999999999999 78 68899999999999999999999998 8 68999
Q ss_pred HHHHHHHHHH
Q 009041 472 EFIDAVATNL 481 (546)
Q Consensus 472 ef~daV~~~L 481 (546)
||+++|++.|
T Consensus 340 e~t~av~~~~ 349 (349)
T TIGR00169 340 VGTAEMGEEL 349 (349)
T ss_pred HHHHHHHhcC
Confidence 9999998764
No 24
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-96 Score=761.07 Aligned_cols=329 Identities=18% Similarity=0.166 Sum_probs=295.5
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC---CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchh
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFP---YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~---~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~ 162 (546)
++|++|||||||||||++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|....
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~-- 82 (344)
T PRK03437 5 MKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS-- 82 (344)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC--
Confidence 57999999999999999999988633 7999999999999999999999999999999999999999999995221
Q ss_pred hccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC----CCcEEEEeeccCCccccccceecCCCceeeeecCCC
Q 009041 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (546)
Q Consensus 163 e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~----~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~ 238 (546)
....++.+++|||+||||+|+|| +|.+||+.++. ++|+|||||||||+|+|.++... +|
T Consensus 83 ----~~~~~~~~~~LRk~ldLyaNvRP--~r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~~-~~---------- 145 (344)
T PRK03437 83 ----GVLERGLLLKLRFALDHYVNLRP--SKLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGALR-VG---------- 145 (344)
T ss_pred ----CCcccchHHHHHHHcCCeEEEEE--eecCCCCCCcCCCCCCCCEEEEEECCCccccCCccccc-CC----------
Confidence 01146779999999999999999 57788876653 69999999999999999865321 11
Q ss_pred CCCCcccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHHHHHhhhcccc
Q 009041 239 GTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (546)
Q Consensus 239 G~~~~~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f 316 (546)
. ..+++ ..+++|+++++||+|+||+||++|+ ++||++||+|||+.+||||+++|+||| ++||
T Consensus 146 -~-----------~~~~a~~~~~~Tr~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp--- 209 (344)
T PRK03437 146 -T-----------PHEVATEVSVNTAFGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVA-AEYP--- 209 (344)
T ss_pred -C-----------cceeEEEEEEecHHHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHH-hhCC---
Confidence 0 12344 4588999999999999999999994 789999999999999999999999998 7999
Q ss_pred ccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCC-ceeecccccccccchh
Q 009041 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFR 394 (546)
Q Consensus 317 ~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a-~~~FEp~HGSAPd~~~ 394 (546)
+|+++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++. ..+|||+||||||
T Consensus 210 ---dV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~HGSAPd--- 283 (344)
T PRK03437 210 ---DVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFGDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVHGSAPD--- 283 (344)
T ss_pred ---CceEeehhHHHHHHHHhcCcccCcEEEEcccchhhhhHHHHHhcCCccccceeeecCCCCcceeEecCCCCchh---
Confidence 99999999999999999999999 999999999999999999999999999999998642 4699999999999
Q ss_pred hcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHH
Q 009041 395 LHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFI 474 (546)
Q Consensus 395 ~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~ 474 (546)
||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++| +| | .++|+||+
T Consensus 284 --iAGk~-iANP~a~IlS~amML~~lg-------~~~~a~~I~~Av~~~l~~g-----~g----g-------~~~T~e~~ 337 (344)
T PRK03437 284 --IAGQG-IADPTAAILSVALLLDHLG-------EEDAAARIEAAVEADLAER-----GK----M-------GRSTAEVG 337 (344)
T ss_pred --hcCCC-ccChHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHhc-----CC----C-------CcCHHHHH
Confidence 99999 9999999999999999999 6789999999999999998 45 7 68999999
Q ss_pred HHHHHHH
Q 009041 475 DAVATNL 481 (546)
Q Consensus 475 daV~~~L 481 (546)
|+|+++|
T Consensus 338 ~ai~~~l 344 (344)
T PRK03437 338 DRIAARL 344 (344)
T ss_pred HHHHhhC
Confidence 9999875
No 25
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=7.1e-96 Score=753.08 Aligned_cols=318 Identities=22% Similarity=0.229 Sum_probs=296.3
Q ss_pred EEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchhhcccc
Q 009041 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLK 167 (546)
Q Consensus 88 I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~e~~l~ 167 (546)
|++||||||||||+++++++|...+++|+|+++++|.++++++|+++|++++++|+++|++||||++||.+.+
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~~------- 73 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANPG------- 73 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCCC-------
Confidence 6899999999999999999998778999999999999999999999999999999999999999999996432
Q ss_pred ccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC--CCcEEEEeeccCCccccccceecCCCceeeeecCCCCCCCccc
Q 009041 168 SMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW--KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVEL 245 (546)
Q Consensus 168 ~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~--~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~~~~~ 245 (546)
++|+|++|||+||||+|+||+ |.+||+.++. ++|+|||||||||+|+|.++..
T Consensus 74 --~~s~~~~LR~~ldlyanvRP~--r~~~g~~~~~~~~iD~vivREnteG~Y~g~~~~~--------------------- 128 (322)
T TIGR02088 74 --YKSVIVTLRKELDLYANVRPA--KSLPGIPDLYPNGKDIVIVRENTEGLYAGFEFGF--------------------- 128 (322)
T ss_pred --ccChHHHHHHHcCCEEEEEEe--eccCCCCCCCCCCCCEEEEEeCcCCeeecccccc---------------------
Confidence 678999999999999999995 6788876553 7999999999999999986421
Q ss_pred ccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCCeEEe
Q 009041 246 DVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYE 324 (546)
Q Consensus 246 ~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI~~e 324 (546)
++++ ..+++|++++|||+|+||+||++|++|||++||+|||+.+||||+++|+||+ ++|| |+++
T Consensus 129 -------~~~a~~~~~~tr~~~eRi~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp-------v~~~ 193 (322)
T TIGR02088 129 -------SDRAIAIRVITREGSERIARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCREIA-KRYG-------VEYR 193 (322)
T ss_pred -------CcceEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHHHHH-HhCC-------eeee
Confidence 1233 4478999999999999999999998889999999999999999999999999 7998 9999
Q ss_pred eEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCc
Q 009041 325 HRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETS 403 (546)
Q Consensus 325 ~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~ti 403 (546)
|++||+++||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ .||||.|||||| ||||+ +
T Consensus 194 ~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~--a~fep~hGsa~d-----iaG~~-~ 265 (322)
T TIGR02088 194 DMYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGLAPSANIGDRK--ALFEPVHGSAPD-----IAGKG-I 265 (322)
T ss_pred eeeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCCCceeEEcCCc--eEEecCCCChhH-----hCCCC-C
Confidence 999999999999999999 99999999999999999999999999999999875 589999999999 99999 9
Q ss_pred cCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHH
Q 009041 404 TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVA 478 (546)
Q Consensus 404 ANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~ 478 (546)
|||+|+|+|++|||+|+| +.++|++|++||.+++++|.+|+||| | .++|+||+|+|+
T Consensus 266 aNp~a~i~A~~~~l~~~g-------~~~~a~~i~~Av~~~l~~g~~T~Dlg----G-------~~~T~e~~~av~ 322 (322)
T TIGR02088 266 ANPTAAILSVAMMLDYLG-------ELEKGKLVWEAVEYYIIEGKKTPDLG----G-------TAKTKEVGDEIA 322 (322)
T ss_pred CChHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHHHHhC
Confidence 999999999999999999 57899999999999999999999998 8 699999999984
No 26
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-96 Score=738.10 Aligned_cols=325 Identities=24% Similarity=0.326 Sum_probs=304.8
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchhhcc
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~e~~ 165 (546)
.+|++||||||||||++++++++.++.++|+|+.+|++...-..++..+|+++++++++++++||||+.||-+++
T Consensus 36 ~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~kg----- 110 (365)
T KOG0785|consen 36 ITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIGKG----- 110 (365)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCccccc-----
Confidence 457999999999999999999999899999999999976654447889999999999999999999999998764
Q ss_pred ccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC-CCcEEEEeeccCCccccccceecCCCceeeeecCCCCCCCcc
Q 009041 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (546)
Q Consensus 166 l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~-~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~~~~ 244 (546)
.+|+|++|||+|+||||+|| |++++|..+++ ++|+|+|||||||+|+|+||.+.
T Consensus 111 ----h~S~nl~LRK~f~LyANVRP--c~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~vv------------------- 165 (365)
T KOG0785|consen 111 ----HRSLNLALRKEFGLYANVRP--CKSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQVV------------------- 165 (365)
T ss_pred ----cccHHHHHHHHhchhcccee--cccccCCcCCCCCceEEEEecCCccccccceeecc-------------------
Confidence 68999999999999999999 79999999988 59999999999999999999753
Q ss_pred cccccccCCceEEE-EeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCCeE
Q 009041 245 LDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIW 322 (546)
Q Consensus 245 ~~v~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI~ 322 (546)
+||+++ ..+|+..++|||+|||+||++++ ++||++||+|||+.+||||+++|+|++ ++|| +|.
T Consensus 166 --------pGVvqsiK~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a-~~y~------dI~ 230 (365)
T KOG0785|consen 166 --------PGVVQSIKLITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVA-KKYP------DIK 230 (365)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHh-hhCC------ccc
Confidence 357777 46999999999999999999985 799999999999999999999999998 7999 999
Q ss_pred EeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCC
Q 009041 323 YEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQE 401 (546)
Q Consensus 323 ~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~ 401 (546)
||++|+|+||++|+++|..| |+|++|||||||||+||+|+||||+.||+|+| ++. .+||++|||||| |||||
T Consensus 231 ~eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG-~g~-~~~e~vHGsAPD-----IAGkd 303 (365)
T KOG0785|consen 231 FEEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIG-DGI-VIFEAVHGSAPD-----IAGKD 303 (365)
T ss_pred hhHHHHHHHHHHHhcCchhceEEeccchhHHHHHHHHHHhccCcccCCCcccC-CCe-eeeecccCCCcc-----cccCC
Confidence 99999999999999999999 99999999999999999999999999999999 663 589999999999 99999
Q ss_pred CccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCC-CCcchhcccCCCCCCCccccCHHHHHHHHHHH
Q 009041 402 TSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK-MTKDLAILVHGPKVSREFYLNTEEFIDAVATN 480 (546)
Q Consensus 402 tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~-~T~DLg~~~~G~~~~~~~~asT~ef~daV~~~ 480 (546)
+|||+|++||++|||+|++ +.++|++|+.||.+++++|. +|+||| | .++|+||+++|+++
T Consensus 304 -lANPtAlllS~vmMLrhm~-------l~~~A~~I~~Av~~ti~eg~~rT~DLG----G-------ka~~seft~aVc~~ 364 (365)
T KOG0785|consen 304 -LANPTALLLSAVMMLRHMG-------LNDQADQIESAVFKTIAEGKIRTPDLG----G-------KATTSEFTDAVCDR 364 (365)
T ss_pred -cCCcHHHHHHHHHHHHHcC-------chhHHHHHHHHHHHHHhccCccCcccC----C-------CccchHHHHHHHhc
Confidence 9999999999999999999 77899999999999999996 999999 8 79999999999987
Q ss_pred H
Q 009041 481 L 481 (546)
Q Consensus 481 L 481 (546)
|
T Consensus 365 l 365 (365)
T KOG0785|consen 365 L 365 (365)
T ss_pred C
Confidence 5
No 27
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1e-93 Score=756.47 Aligned_cols=358 Identities=20% Similarity=0.177 Sum_probs=298.1
Q ss_pred EEEEcCCccHHHHHHHHHHHHhcC---C----CceeEEEEecchhhhhhcCC--CCcHHHHHHHHhcCeEEEecccCCCc
Q 009041 88 IVEMDGDEMTRIIWQMIKDKLIFP---Y----LDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 158 (546)
Q Consensus 88 I~vlpGDGIGpEI~~~~~~~l~~~---~----~~i~~~~~dlG~~~~d~tg~--~lp~etleaik~~daiLkGav~tP~~ 158 (546)
|++|||||||||||++++++|.+. . ++|+|.++++|.++++++|+ .+|++++++|+++|++||||++||.+
T Consensus 31 I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~ 110 (474)
T PRK07362 31 IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIG 110 (474)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 899999999999999999988521 1 58999999999999999997 79999999999999999999999964
Q ss_pred cchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC----CCcEEEEeeccCCccccccceecCCCceee--
Q 009041 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKM-- 232 (546)
Q Consensus 159 ~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~----~vDiVIvREntEG~Y~g~e~~~~~~g~~~~-- 232 (546)
.+ ++|.|++||++||||+|+|| +|.+||+.+++ ++|+|||||||||+|+|.++....+...++
T Consensus 111 ~g---------~~s~~l~LRk~ldLyaNvRP--vr~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~ 179 (474)
T PRK07362 111 GG---------IRSLNVALRQIFDLYSCVRP--CRYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIK 179 (474)
T ss_pred cC---------ccchHHHHHHHcCCceeeeE--eeccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhccc
Confidence 32 57889999999999999999 57788877654 599999999999999999764311100011
Q ss_pred ----eecCCCCCCCcccccccccCCceEE-EEeecHHHHHHHHHHHHHHHHcC---CCCEEEEeCCCccccchhHHHHHH
Q 009041 233 ----VFDPEDGTGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSK---KWPLYLSTKNTILKKYDGRFKDIF 304 (546)
Q Consensus 233 ----~~~~~~G~~~~~~~v~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r---kkkVT~v~KaNVlk~tdGlFrei~ 304 (546)
.+.|.++..- .... ..+++. .+++|+++++||+|+||+||++| +++||+|||+||||.+||+|++++
T Consensus 180 ~~~~~~~~~~~~~~----~~~~-~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~ 254 (474)
T PRK07362 180 HLNEEVIPASPELG----KRQI-PLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWG 254 (474)
T ss_pred cccccccccccccc----cccc-ccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHH
Confidence 1111111000 0000 123444 47899999999999999999998 368999999999999999999998
Q ss_pred HHHHHhhh-------------------ccc------------------------------------------cccCCeEE
Q 009041 305 QQVYEERW-------------------RQK------------------------------------------FEEHSIWY 323 (546)
Q Consensus 305 ~eVa~~eY-------------------P~~------------------------------------------f~~~dI~~ 323 (546)
.|||+++| |+- =..++|.+
T Consensus 255 ~evA~~~~~~~~v~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 334 (474)
T PRK07362 255 YELATTEFRDECVTERESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLV 334 (474)
T ss_pred HHHHHHhhhhhhhhhhhhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccccCCCccee
Confidence 89995355 420 00135899
Q ss_pred eeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCC
Q 009041 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQET 402 (546)
Q Consensus 324 e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~t 402 (546)
+|++||+++||||++|++| ||||+|||||||||++|+++|||||+||+|+|++. ++|||+|||||| |||||
T Consensus 335 ~~~~vDa~a~~lv~~P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~~--a~FEpvHGSAPd-----IAGk~- 406 (474)
T PRK07362 335 DDRIADSIFQQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDNA--AIFEATHGTAPK-----HAGLD- 406 (474)
T ss_pred ehHHHHHHHHHHHhChhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCCc--eeeecCCCCchh-----hcCCC-
Confidence 9999999999999999999 99999999999999999999999999999999875 589999999999 99999
Q ss_pred ccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHHHH
Q 009041 403 STNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATN 480 (546)
Q Consensus 403 iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~~~ 480 (546)
+|||+|+|||++|||+|+| +.++|++|++||.+++++|.+|+||| |........++|+||+++|+++
T Consensus 407 iANP~A~ILS~aMML~~LG-------~~~~A~~I~~AV~~vl~~g~~T~Dlg----~~~~~~~~~~sT~E~~~aIi~~ 473 (474)
T PRK07362 407 RINPGSVILSGVMMLEYLG-------WQEAADLITKGLSAAIANKQVTYDLA----RLMEPPVDPLSCSEFAEAIISH 473 (474)
T ss_pred CcCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCcccCCC----CccccCCCCcCHHHHHHHHHhc
Confidence 9999999999999999999 68899999999999999999999997 4100011258999999999976
No 28
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=6.6e-93 Score=739.27 Aligned_cols=332 Identities=27% Similarity=0.315 Sum_probs=291.4
Q ss_pred cEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchh
Q 009041 87 PIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (546)
Q Consensus 87 ~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~ 162 (546)
+|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|+|++++|+++|++||||+++|.....+
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~~~ 80 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPGIR 80 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSSHS
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEcccccccccccc
Confidence 5899999999999999999988543 489999999999999999999999999999999999999999999844321
Q ss_pred hccccccCCCchHHHHHhcCcEEEeeecccccCCC--CCCC------CCCcEEEEeeccCCccccccceecCCCceeeee
Q 009041 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPR--IVPG------WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVF 234 (546)
Q Consensus 163 e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~--~~~~------~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~ 234 (546)
+ .++.++||++||||+|+||+ +.+|+ ..++ .++|||||||||||+|+|.++.... +
T Consensus 81 ~-------~~~l~~lR~~ldl~anvRp~--~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~-~------ 144 (348)
T PF00180_consen 81 S-------ENGLLKLRKELDLYANVRPV--RSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGD-G------ 144 (348)
T ss_dssp H-------HHHHHHHHHHTTHHEEEEEE--EEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECS-E------
T ss_pred c-------HHHHHHHHHhcccceeeEEE--EEeccccccccccccccCcceEEEecccccCcccCCCCceee-c------
Confidence 1 12448999999999999995 66643 2322 2499999999999999999987631 1
Q ss_pred cCCCCCCCcccccccccCCceEEE-EeecHHHHHHHHHHHHHHHHcC-CCCEEEEeCCCccccchhHHHHHHHHHHHhhh
Q 009041 235 DPEDGTGPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (546)
Q Consensus 235 ~~~~G~~~~~~~v~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~r-kkkVT~v~KaNVlk~tdGlFrei~~eVa~~eY 312 (546)
+.+++++.. +++|++++|||+|+||+||++| +++||++||+|||+.++ +|+++|+||++++|
T Consensus 145 ---------------~~~~~~a~~~~~~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~y 208 (348)
T PF00180_consen 145 ---------------GTPDEVAIDTKVITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEY 208 (348)
T ss_dssp ---------------EEGSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTH
T ss_pred ---------------cCCCceEEEeeccccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhc
Confidence 011345554 7899999999999999999999 78999999999999999 99999999994499
Q ss_pred ccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeeccccccccc
Q 009041 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391 (546)
Q Consensus 313 P~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd 391 (546)
| +|+++|++||+++|+||++|++| ||||+|||||||||++++++||+||+||+|+|+++ .++|||+||||||
T Consensus 209 p------~I~~~~~~vD~~~~~Lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~psanig~~~-~a~fEp~HGSApd 281 (348)
T PF00180_consen 209 P------DIEVEHMLVDAAAMQLVKNPEQFDVIVTPNLFGDILSDLAAGLVGGLGLAPSANIGPDG-HAMFEPVHGSAPD 281 (348)
T ss_dssp T------TSEEEEEEHHHHHHHHHHSGGGESEEEEEHHHHHHHHHHHHHHHTSGGGEEEEEEETSS-EEEEEESSTTTGG
T ss_pred c------eeEeeeeechhhhheeecCCcceeEEeecchhHHHHHHHhhhcCCChhhhhhhccCccc-ccccccccccccc
Confidence 9 99999999999999999999999 99999999999999999999999999999999654 4699999999999
Q ss_pred chhhcccCCCCccCchhHHHHHHHHHHh-hhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCH
Q 009041 392 HFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNT 470 (546)
Q Consensus 392 ~~~~~IAGK~tiANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT 470 (546)
||||| +|||+|+|||++|||+| +| +.+.|++|++||.+++++|++|+||| |.. .+.++|
T Consensus 282 -----iaGk~-~aNP~a~Ils~a~mL~~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dlg----g~~---~~~~~T 341 (348)
T PF00180_consen 282 -----IAGKG-IANPIAMILSAAMMLEHSLG-------LPEAADAIEKAVEKVLEEGIRTPDLG----GSA---TTAVST 341 (348)
T ss_dssp -----GTTSS-HS-THHHHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHTTEEBGGGH----TTT---CEEBHH
T ss_pred -----ccCCc-ccCcHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHcCCCCcccc----CCC---CCCCCH
Confidence 99999 99999999999999999 88 78999999999999999999999999 721 234599
Q ss_pred HHHHHHH
Q 009041 471 EEFIDAV 477 (546)
Q Consensus 471 ~ef~daV 477 (546)
+||+|+|
T Consensus 342 ~e~~daV 348 (348)
T PF00180_consen 342 EEFGDAV 348 (348)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999997
No 29
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=3e-89 Score=703.13 Aligned_cols=363 Identities=36% Similarity=0.474 Sum_probs=328.2
Q ss_pred EEEEcCCccHHHHHHHHHHHH----hcCC---CceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccc
Q 009041 88 IVEMDGDEMTRIIWQMIKDKL----IFPY---LDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (546)
Q Consensus 88 I~vlpGDGIGpEI~~~~~~~l----~~~~---~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~ 160 (546)
|.++.|||||+|||.++.+++ +.+| .+|+|.|+++|.+++++||+.+|+|++++|+++.|+||||++||.+
T Consensus 21 iP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPvg-- 98 (407)
T COG0538 21 IPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPVG-- 98 (407)
T ss_pred cceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCccc--
Confidence 468889999999998877655 4567 8999999999999999999999999999999999999999999964
Q ss_pred hhhccccccCCCchHHHHHhcCcEEEeeeccc-ccCCCCCCC-CCCcEEEEeeccCCccccccceecCCCceeeeecCCC
Q 009041 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILC-QNIPRIVPG-WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (546)
Q Consensus 161 ~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~-k~iP~~~~~-~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~ 238 (546)
++|+|||++|||.||||+|+|||++ +++|.++++ |++||||+||||||+|.|+|+...+++..++.+.+++
T Consensus 99 -------~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~ 171 (407)
T COG0538 99 -------KGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLED 171 (407)
T ss_pred -------ccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhhc
Confidence 5699999999999999999999986 489988876 8999999999999999999999999999999988776
Q ss_pred CCCCccccccccc-CCceEEEEeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHHHHHhh-----
Q 009041 239 GTGPVELDVYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEER----- 311 (546)
Q Consensus 239 G~~~~~~~v~~~~-~~~va~~~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~eVa~~e----- 311 (546)
+.. +++++|+ +.|++..+ +++++++|++|.||+||.+++ ++||++||.||||+|+|.|+++++|||+++
T Consensus 172 e~~---~~~i~~pe~~GIgikp-~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~ 247 (407)
T COG0538 172 EMG---VKKIRFPEDSGIGIKP-ISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDE 247 (407)
T ss_pred ccc---cceEecCCCCceEEEe-cCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhccccc
Confidence 532 5667775 45555554 567888889999999999997 899999999999999999999999999774
Q ss_pred ---hccccccCC----eEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeec
Q 009041 312 ---WRQKFEEHS----IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAE 383 (546)
Q Consensus 312 ---YP~~f~~~d----I~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FE 383 (546)
|..+|+..+ |.|+|+++|+|.+|++++|+.| ||+|+||.||++||.+|+++|||||+||+|||+. .++||
T Consensus 248 ~~~~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~~~--~~~fE 325 (407)
T COG0538 248 VVTGKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIGDG--TAEFE 325 (407)
T ss_pred ccccchhhhccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceecCc--eEEEE
Confidence 677888888 9999999999999999999999 9999999999999999999999999999999943 46999
Q ss_pred ccccccccchhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCC
Q 009041 384 AAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVS 463 (546)
Q Consensus 384 p~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~ 463 (546)
|+|||||+ ++||+ ++||+|+||||.|||+|+| +.++|+.|++||.+++++|++|+||+++..|.
T Consensus 326 A~HGTapk-----~aG~~-~~Np~a~Ils~~~ml~~~G-------w~eaa~li~~a~~~ti~~~~vT~DlArl~~~~--- 389 (407)
T COG0538 326 ATHGTAPK-----YAGKD-STNPIASILSGTMMLRHRG-------WLEAADLIEKAVEDTIESGKVTYDLARLMGGA--- 389 (407)
T ss_pred eccCcccc-----ccCcC-CCCcHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHhCceeHHHHHhhCCC---
Confidence 99999999 68997 9999999999999999999 67799999999999999999999999877441
Q ss_pred CccccCHHHHHHHHHHHHH
Q 009041 464 REFYLNTEEFIDAVATNLG 482 (546)
Q Consensus 464 ~~~~asT~ef~daV~~~L~ 482 (546)
..+++|+||+|+|+++|+
T Consensus 390 -~~~v~tsEF~d~ii~~l~ 407 (407)
T COG0538 390 -KRYLSTSEFADAIIENLK 407 (407)
T ss_pred -ccceeHHHHHHHHHHhcC
Confidence 127999999999999874
No 30
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-84 Score=655.53 Aligned_cols=332 Identities=20% Similarity=0.245 Sum_probs=304.4
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCcc
Q 009041 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (546)
Q Consensus 80 ~ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~ 159 (546)
.|+..+++|++|||||||||++..+.+++.+..+|++|++++++.. .+.++..++|+++++++++|.|||.+.||+..
T Consensus 37 ~kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~~--~~~~~~~~~e~v~Si~rNkValkG~i~t~~~~ 114 (375)
T KOG0784|consen 37 AKYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSGS--NKESSEDLDEAVESIKRNKVALKGNIETPDLP 114 (375)
T ss_pred cccCCcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccCC--ccccchhHHHHHHHHHhcceeEeecccCCCCc
Confidence 4888889999999999999999999999999999999999999872 23455679999999999999999999999422
Q ss_pred chhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC-CCcEEEEeeccCCccccccceecCCCceeeeecCCC
Q 009041 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (546)
Q Consensus 160 ~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~-~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~ 238 (546)
.+.+|.|+.||++||||||+-. |+++||+++++ ++|||||||||||+|+|.||+..
T Consensus 115 --------g~~~s~n~~LR~~LDLyanvv~--~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~V------------- 171 (375)
T KOG0784|consen 115 --------GGAKSLNVKLRKELDLYANVVH--CKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESV------------- 171 (375)
T ss_pred --------cchhhhHHHHHHhhhhhhheee--eeccCCcccccCCccEEEEecCCcccccccccccC-------------
Confidence 2368999999999999999977 79999999988 59999999999999999999863
Q ss_pred CCCCcccccccccCCceEEE-EeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHHHHHhhhcccc
Q 009041 239 GTGPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (546)
Q Consensus 239 G~~~~~~~v~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f 316 (546)
+||.++ .++|++.++|||||||+||.+.+ ||||+||||||||..||||+++|+||+ +.||
T Consensus 172 --------------pGVVEsLKVvT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva-~~Yp--- 233 (375)
T KOG0784|consen 172 --------------PGVVESLKVVTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVA-KKYP--- 233 (375)
T ss_pred --------------cchhheeeeehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHH-hcCC---
Confidence 467777 46899999999999999999985 899999999999999999999999999 5699
Q ss_pred ccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhh
Q 009041 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRL 395 (546)
Q Consensus 317 ~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~ 395 (546)
+|+++.|+||++|||||.+|++| |+|++||||.|+|++||+++||.|++|++|+|++++ +|||. .+|-+.
T Consensus 234 ---~I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~yA--VFE~g----~r~~~~ 304 (375)
T KOG0784|consen 234 ---DITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDDYA--VFEPG----ARHTGT 304 (375)
T ss_pred ---CccHHHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHHHhcCCCCcccccccccceE--Eeccc----ccccch
Confidence 99999999999999999999999 999999999999999999999999999999999996 68995 233333
Q ss_pred cccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcC-CCCcchhcccCCCCCCCccccCHHHHH
Q 009041 396 HQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREFYLNTEEFI 474 (546)
Q Consensus 396 ~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLg~~~~G~~~~~~~~asT~ef~ 474 (546)
.++||+ +|||+|+|+|.++||+||| ++.+|++|+.||.+|+.+| ++|+||| | +.||++|+
T Consensus 305 ~~~g~~-~aNPtA~llss~~MLrHL~-------l~~~Ad~i~~Av~~vi~egk~rT~DlG----G-------~~Tt~dvi 365 (375)
T KOG0784|consen 305 SIAGKN-IANPTAMLLSSVDMLRHLG-------LPSHADRISTAVKRVIDEGKIRTKDLG----G-------QSTTQDVI 365 (375)
T ss_pred hhhccc-ccCcHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHhcCcccccccC----C-------CcchHHHH
Confidence 489999 9999999999999999999 7899999999999999999 5999999 8 79999999
Q ss_pred HHHHHHHH
Q 009041 475 DAVATNLG 482 (546)
Q Consensus 475 daV~~~L~ 482 (546)
++|+++|+
T Consensus 366 ~avI~~l~ 373 (375)
T KOG0784|consen 366 DAVIANLR 373 (375)
T ss_pred HHHHHHhc
Confidence 99999986
No 31
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-76 Score=578.40 Aligned_cols=337 Identities=20% Similarity=0.192 Sum_probs=293.3
Q ss_pred ecccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCcc
Q 009041 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (546)
Q Consensus 84 v~~~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~ 159 (546)
-+++|++||||||||||+..++.+|... +++|+|++..+|+.+.|.+|.|+|+|++++.|++|++|+|++|+|.|+
T Consensus 3 ~~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~ 82 (363)
T KOG0786|consen 3 KRYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWD 82 (363)
T ss_pred CcceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccC
Confidence 3588999999999999999999988643 589999999999999999999999999999999999999999999876
Q ss_pred chhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCC--------CCCcEEEEeeccCCccccccceecCCCcee
Q 009041 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG--------WKKPICIGRHAFGDQYRATDTVIKGPGKLK 231 (546)
Q Consensus 160 ~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~--------~~vDiVIvREntEG~Y~g~e~~~~~~g~~~ 231 (546)
.- .+.+ ....+.||+.|.+|+|+|| +.-+|.++.- .++|++||||.|+|+|+|.....+
T Consensus 83 ~~---~lrp--e~gll~ir~~lkvfanlrp--~~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~en------ 149 (363)
T KOG0786|consen 83 KN---HLRP--EMGLLKIRRDLKVFANLRP--ATVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRNEN------ 149 (363)
T ss_pred cC---CcCh--hhhHHHHHHHHHHHhcCCc--chhhHhhhccccccHHHhcCcceEEeeeecCceeecCcccCC------
Confidence 21 0000 1235899999999999999 4556654321 269999999999999999765322
Q ss_pred eeecCCCCCCCcccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCC--CCEEEEeCCCccccchhHHHHHHHHHH
Q 009041 232 MVFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRFKDIFQQVY 308 (546)
Q Consensus 232 ~~~~~~~G~~~~~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rk--kkVT~v~KaNVlk~tdGlFrei~~eVa 308 (546)
| ++++ ++..|+-.++.||+|.||+.|++|+ .++|++||+||+. ++.|||+.+.+..
T Consensus 150 -------g-------------~gva~dte~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~ 208 (363)
T KOG0786|consen 150 -------G-------------EGVAFDTEIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKAL 208 (363)
T ss_pred -------C-------------cceeeccccccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHH
Confidence 2 3554 4578999999999999999999997 7999999999998 8999999999877
Q ss_pred HhhhccccccCCeEEeeEehhHHHHHHhhCCCCe--eeeccCCcchhhhhhHhhhcCCcccccccccC-----CCCCcee
Q 009041 309 EERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY--VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLS-----SDGKTLE 381 (546)
Q Consensus 309 ~~eYP~~f~~~dI~~e~~lVDa~amqLVk~P~~F--VIVt~NlfGDILSDlaA~l~GslGlapSanig-----~d~a~~~ 381 (546)
.+||| ++++.|+|||+++|||||+|.+| +|+|.|+||||+||.++.+.||+||.|||+++ +.+ ..+
T Consensus 209 k~EyP------~l~l~hqliDsAAM~Lvk~P~~lng~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~-~gL 281 (363)
T KOG0786|consen 209 KSEYP------DLELSHQLIDSAAMQLVKDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESG-PGL 281 (363)
T ss_pred HhhCC------CcchhhhhhhHHHHHHhcCchhcCceEEeccchhhhhccccccccCccccccchhhcCCcccccC-Ccc
Confidence 68999 99999999999999999999999 99999999999999999999999999999998 333 579
Q ss_pred ecccccccccchhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCC
Q 009041 382 AEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPK 461 (546)
Q Consensus 382 FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~ 461 (546)
|||+|||||| |+||+ ++||+|+|||++|||.| .|+ +.++|.+||+||.+++..|.+|.||| |
T Consensus 282 ~EPiHGSAPD-----iagk~-kvNPlaTILSAamlLky--gLn----~pkeakaIEdAV~kvLd~G~rTgDlg----g-- 343 (363)
T KOG0786|consen 282 FEPIHGSAPD-----IAGKD-KVNPLATILSAAMLLKY--GLN----EPKEAKAIEDAVVKVLDKGFRTGDLG----G-- 343 (363)
T ss_pred cccCCCCCCC-----cCCCC-ccChHHHHHHHHHHHHh--cCC----ChhhHHHHHHHHHHHHhccccccccC----C--
Confidence 9999999999 99999 99999999999999988 344 67899999999999999999999998 7
Q ss_pred CCCccccCHHHHHHHHHHHHHhh
Q 009041 462 VSREFYLNTEEFIDAVATNLGAK 484 (546)
Q Consensus 462 ~~~~~~asT~ef~daV~~~L~~~ 484 (546)
..+|.+.+++|.+.+.+.
T Consensus 344 -----~~st~~~~kav~EEv~Ki 361 (363)
T KOG0786|consen 344 -----PGSTLVGCKAVGEEVLKI 361 (363)
T ss_pred -----CCcchhhHHHHHHHHHHh
Confidence 456666666666666543
No 32
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=97.44 E-value=0.0059 Score=68.28 Aligned_cols=187 Identities=19% Similarity=0.195 Sum_probs=115.3
Q ss_pred CCceEEEEeecHHHHHHHHHHHHHHHHcCCCC-EEEEeCCCccccchhHHHHHHHHHHHhhhccccccCCeEEeeEe-hh
Q 009041 252 GPGIALAMYNVDESIRAFAESSMSLAFSKKWP-LYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL-ID 329 (546)
Q Consensus 252 ~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkk-VT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI~~e~~l-VD 329 (546)
..++|..+..-+.-++-+++.|.+.||..+.+ |.=.|+.-. -| .++...| +.|=.+..-.|+.+.-+- +|
T Consensus 448 ~GDIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~RA---HD---a~lI~kV--~~yL~~hdt~gldi~Im~P~~ 519 (735)
T PF03971_consen 448 AGDIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENRA---HD---AELIKKV--EKYLKDHDTSGLDIRIMSPVE 519 (735)
T ss_dssp TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTSH---HH---HHHHHHH--HHHHTTS--TT--EEEE-HHH
T ss_pred CCcchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCCc---cH---HHHHHHH--HHHHHhcCCCCCceEeeCHHH
Confidence 35677777777889999999999999998865 555555432 12 3445555 245434444467777664 45
Q ss_pred HHHHHH--hhCCCCeeeeccCCcchhhhhhHhhh--cCCcccccccccCCCCCceeecc-cccccccchhhcccCCCCcc
Q 009041 330 DMVAYA--IKSEGGYVWACKNYDGDVQSDLLAQG--FGSLGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQKGQETST 404 (546)
Q Consensus 330 a~amqL--Vk~P~~FVIVt~NlfGDILSDlaA~l--~GslGlapSanig~d~a~~~FEp-~HGSAPd~~~~~IAGK~tiA 404 (546)
++-.-| ++.-..-+-||.|..=|+|+||.--| --|.=|+.=+=+=..| ++||. +-||||.|..+.+.-.--.=
T Consensus 520 A~~~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~GG--GLFETGAGGSAPKHVqQf~eEnhLRW 597 (735)
T PF03971_consen 520 ATRFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGG--GLFETGAGGSAPKHVQQFVEENHLRW 597 (735)
T ss_dssp HHHHHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTTS---EEEES-SS---HHHHHHHCCCS----
T ss_pred HHHHHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhcccCC--ceeccCCCCCccHHHHHHHHcCcccc
Confidence 554333 45555558899999999999998754 2222222111111223 58999 56899999888654322256
Q ss_pred CchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCC
Q 009041 405 NSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK 448 (546)
Q Consensus 405 NPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~ 448 (546)
+.++-+||.+..|+|++...+|+.-.-.|+.|++|+.+.|++++
T Consensus 598 DSLGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~~~L~n~k 641 (735)
T PF03971_consen 598 DSLGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATGKFLENNK 641 (735)
T ss_dssp -THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred cchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999998898889999999999999999875
No 33
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=97.19 E-value=0.009 Score=66.93 Aligned_cols=183 Identities=17% Similarity=0.187 Sum_probs=124.2
Q ss_pred CceEEEEeecHHHHHHHHHHHHHHHHcCCCC-EEEEeCCCccccchhHHHHHHHHHHHhhhccccccCCeEEeeEe-hhH
Q 009041 253 PGIALAMYNVDESIRAFAESSMSLAFSKKWP-LYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL-IDD 330 (546)
Q Consensus 253 ~~va~~~~~Tr~~ieRiar~AFe~A~~rkkk-VT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI~~e~~l-VDa 330 (546)
.++|..+.--+.-++-+++.|.+.||..+.+ |.=.|+.-. -| .++...| +.|=.+..-.|+.+.-+- +++
T Consensus 453 GDIwRmcq~KD~pI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HD---a~lI~kV--~~yL~~hdt~gldi~Im~p~~A 524 (741)
T TIGR00178 453 GDIWRMCQVKDAPIQDWVKLAVTRARATGTPAVFWLDPARA---HD---AQLIKKV--ETYLKDHDTEGLDIQILSPVEA 524 (741)
T ss_pred CcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEEeCCCch---hH---HHHHHHH--HHHHHhcCCCCCceEeeCHHHH
Confidence 4455555556778999999999999998865 444554322 12 2333444 133222222366666553 455
Q ss_pred HHH--HHhhCCCCeeeeccCCcchhhhhhHhhhc--CC---cccccccccCCCCCceeecc-cccccccchhhcccCCCC
Q 009041 331 MVA--YAIKSEGGYVWACKNYDGDVQSDLLAQGF--GS---LGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQKGQET 402 (546)
Q Consensus 331 ~am--qLVk~P~~FVIVt~NlfGDILSDlaA~l~--Gs---lGlapSanig~d~a~~~FEp-~HGSAPd~~~~~IAGK~t 402 (546)
+-. .-+++-++-+-||.|..=|+|+||.--|= -| |-+.|= +. .| ++||. +-||||.|..+.+.-.--
T Consensus 525 ~~~slerir~G~dTISVTGNVLRDYLTDLFPILElGTSAKMLSIVPL--m~-GG--GLFETGAGGSAPKHVqQf~eEnhL 599 (741)
T TIGR00178 525 TRFSLARIRRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPL--MA-GG--GLFETGAGGSAPKHVQQFLEENHL 599 (741)
T ss_pred HHHHHHHHHcCCCeEEEechhHHhhhcchhhhhhhccchhhhhhhhc--cc-CC--ceecCCCCCCccHHHHHHHHcCcc
Confidence 533 33556556688999999999999986542 12 122221 22 22 48999 568999998876543222
Q ss_pred ccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCC
Q 009041 403 STNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK 448 (546)
Q Consensus 403 iANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~ 448 (546)
.=+.++-+||.+..|+|++.-.+|+.-.-.|+.|++|+.+.|++++
T Consensus 600 RWDSLGEFlALa~Sle~la~~~~n~ka~vLa~tLd~At~k~L~n~k 645 (741)
T TIGR00178 600 RWDSLGEFLALAASLEHLGNATGNPKALVLADTLDAATGKLLDNNK 645 (741)
T ss_pred cccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC
Confidence 5689999999999999999888888888899999999999998875
No 34
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=95.65 E-value=0.28 Score=54.45 Aligned_cols=182 Identities=19% Similarity=0.167 Sum_probs=117.5
Q ss_pred ceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCCeEEeeE-ehhHHH
Q 009041 254 GIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR-LIDDMV 332 (546)
Q Consensus 254 ~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI~~e~~-lVDa~a 332 (546)
++|..+.....-++-+++.|.+.||..+.++..---.+- ..| ++....| +.|=.+-.-.|+.+.-+ .+.+|-
T Consensus 456 DiwR~cq~kdapi~dWVkLaV~RarlS~~pavFWLDp~R--ahd---~~li~kV--~~yLkdhdt~GldI~Ilsp~ea~~ 528 (744)
T COG2838 456 DIWRMCQVKDAPIRDWVKLAVTRARLSGMPAVFWLDPYR--AHD---KELIKKV--EAYLKDHDTNGLDIQILSPVEAMR 528 (744)
T ss_pred cHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEeCcCc--cch---HHHHHHH--HHHhhhcCCCCcceEEecHHHHHH
Confidence 445556667888999999999999998866443221111 112 2333344 13322211124444333 244443
Q ss_pred H--HHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccc------cCCCCCceeecc-cccccccchhhcccCCCCc
Q 009041 333 A--YAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVL------LSSDGKTLEAEA-AHGTVTRHFRLHQKGQETS 403 (546)
Q Consensus 333 m--qLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSan------ig~d~a~~~FEp-~HGSAPd~~~~~IAGK~ti 403 (546)
. ..+++-++-+-||.|..-|+|+||.--+- |-+||- +=..| +|||. +.||||.|..+-..-.--.
T Consensus 529 ~sl~rl~~G~DtIsvTGNvLRDYlTDLFPIlE----LGTSAKMLSiVPlmaGG--gmfETGAGGSAPKhVqQ~~eENhLR 602 (744)
T COG2838 529 YSLERLRRGEDTISVTGNVLRDYLTDLFPILE----LGTSAKMLSIVPLMAGG--GMFETGAGGSAPKHVQQLVEENHLR 602 (744)
T ss_pred HHHHHHHcCCceeEecchHHHHHHhhhhhHhh----cccccchheeeeeccCC--ceeecCCCCCCcHHHHHHHHhcccc
Confidence 3 23455556688999999999999986542 222321 11123 58998 4689999987654322224
Q ss_pred cCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCC
Q 009041 404 TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK 448 (546)
Q Consensus 404 ANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~ 448 (546)
=+.++-+|+.+..|+|+|.-.+|..-.-.|+.|+.|..+.++..+
T Consensus 603 WDSLGEFLALa~sle~~~~k~gn~kAkvLa~~LD~AtgklLdn~K 647 (744)
T COG2838 603 WDSLGEFLALAASLEHLGNKTGNAKAKVLAKALDAATGKLLDNNK 647 (744)
T ss_pred hhhHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999777787778889999999999997654
No 35
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=90.54 E-value=0.13 Score=56.06 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=19.5
Q ss_pred CCcEEEEeecc-CCccccccce
Q 009041 203 KKPICIGRHAF-GDQYRATDTV 223 (546)
Q Consensus 203 ~vDiVIvREnt-EG~Y~g~e~~ 223 (546)
++|++|+|||| ||+|+|.++.
T Consensus 140 ~iD~vivREnt~Eg~Y~g~e~~ 161 (409)
T TIGR00127 140 ATDFVVPGPGKLELVYKPKDGT 161 (409)
T ss_pred ceEEEEecCCeeeEEEECCCCC
Confidence 69999999999 9999999874
No 36
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=87.92 E-value=0.35 Score=50.78 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=20.9
Q ss_pred ecccccccccchhhcccCCCCccCchhHHHHHH
Q 009041 382 AEAAHGTVTRHFRLHQKGQETSTNSIASIFAWT 414 (546)
Q Consensus 382 FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~a 414 (546)
--|.||||-| ||||| +|||.+|+-|.-
T Consensus 269 TS~DHGTAfD-----IAGkg-~A~~~s~~~Ai~ 295 (298)
T PF04166_consen 269 TSPDHGTAFD-----IAGKG-IADPSSMIEAIK 295 (298)
T ss_dssp EEESS-S-CC-----GTTTT-TS-THHHHHHHH
T ss_pred ecCCCCchhh-----hhCCC-CCChHHHHHHHH
Confidence 3588999999 99999 999999998743
No 37
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=87.27 E-value=0.38 Score=52.61 Aligned_cols=40 Identities=83% Similarity=1.472 Sum_probs=32.9
Q ss_pred CCCCcEEEEeeccCCccccccceecCCCceeeeecCCCCC
Q 009041 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (546)
Q Consensus 201 ~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~ 240 (546)
++.-++++.|+..+|.|.+.+....+++.+++++..++..
T Consensus 125 g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivRENTE 164 (410)
T PLN00103 125 GWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKD 164 (410)
T ss_pred CCCCceeecccccccccccceeccCCCCceEEEEEecCCC
Confidence 4556899999999999999888766678899998887643
No 38
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=86.03 E-value=0.53 Score=50.09 Aligned_cols=138 Identities=13% Similarity=0.027 Sum_probs=69.2
Q ss_pred eecHHHHHHHHHHHHHHHHcCC--C-CEEEEeCCCccccchhHH-HHHHHHHH--HhhhccccccCCeEEee-EehhHHH
Q 009041 260 YNVDESIRAFAESSMSLAFSKK--W-PLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYEH-RLIDDMV 332 (546)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~rk--k-kVT~v~KaNVlk~tdGlF-rei~~eVa--~~eYP~~f~~~dI~~e~-~lVDa~a 332 (546)
.+|.+.+.+.++...+.-++-+ + |+-+ -==|==.--+|+| +|--+.+. -++.. +.++.++- .--|.+-
T Consensus 177 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV-~gLNPHAGE~G~~G~EE~~iI~PAi~~~~----~~G~~v~GP~paDt~F 251 (326)
T PRK03371 177 TLNTARVETVIGIADTFLKRVGYVKPRIAV-AGVNPHAGENGLFGDEEIRIVTPAIEAMR----AKGMDVYGPCPPDTVF 251 (326)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCCEEE-EeeCCCCCCCCCCcHHHHHHHHHHHHHHH----HCCCcccCCCCchhhc
Confidence 4688888888877766555322 2 2322 1122222225677 44333332 01221 11444322 2224433
Q ss_pred HHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHHH
Q 009041 333 AYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIF 411 (546)
Q Consensus 333 mqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~Il 411 (546)
.+-.+ +.| ++|+ ||=| .+---+=.+|+--+.|+.-.--..---|-||||-| ||||| +|||.+|+-
T Consensus 252 ~~~~~--~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfD-----IAGkG-~A~~~S~~~ 317 (326)
T PRK03371 252 LQAYE--GQYDMVVA--MYHD----QGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFD-----IAWTG-KAKSESMAV 317 (326)
T ss_pred ccccc--cCCCEEEE--cccc----ccchhheecccccceEEecCCCeeEecCCCCchhh-----hhcCC-cCCHHHHHH
Confidence 33222 457 4444 3444 21111223444456665421111123588999999 99999 999999998
Q ss_pred HHHHH
Q 009041 412 AWTRG 416 (546)
Q Consensus 412 S~amm 416 (546)
|.-++
T Consensus 318 Ai~lA 322 (326)
T PRK03371 318 SIKLA 322 (326)
T ss_pred HHHHH
Confidence 85443
No 39
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=84.70 E-value=0.65 Score=49.49 Aligned_cols=140 Identities=9% Similarity=-0.072 Sum_probs=72.6
Q ss_pred eecHHHHHHHHHHHHHHHHcC-C--C-CEEEEeCCCccccchhHH-HHHHHHHH--HhhhccccccCCeEEe-eEehhHH
Q 009041 260 YNVDESIRAFAESSMSLAFSK-K--W-PLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDM 331 (546)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r-k--k-kVT~v~KaNVlk~tdGlF-rei~~eVa--~~eYP~~f~~~dI~~e-~~lVDa~ 331 (546)
.+|.+.+.+.++...+.-+++ + + |+-+.- =|==.--+|+| +|-.+.+. =++.. +.++.++ -.--|.+
T Consensus 173 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~G-LNPHAGE~G~~G~EE~~iI~PAi~~~~----~~Gi~v~GP~paDt~ 247 (329)
T PRK01909 173 ALTIDGLVETLAIIDRDLRRDFGLAAPRILVTG-LNPHAGENGYLGREEIDVIEPALARAR----AAGIDARGPYPADTL 247 (329)
T ss_pred HhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEe-eCCCCCCCCCCcHHHHHHHHHHHHHHH----HCCCCccCCCCchhh
Confidence 478999999999888866632 3 2 333221 22212225666 43333221 01111 1144432 2233554
Q ss_pred HHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHH
Q 009041 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (546)
Q Consensus 332 amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~I 410 (546)
-.+..+ +.| ++|+ ||=| .+---+=.+|+-.+.|+.-.--..---|-||||-| ||||| +|||.+|+
T Consensus 248 F~~~~~--~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfD-----IAGkg-~A~~~S~~ 313 (329)
T PRK01909 248 FQPRYL--EDADCVLA--MFHD----QGLPVLKYATFGEGINVTLGLPIIRTSVDHGTALD-----LAGTG-RADPGSMI 313 (329)
T ss_pred cccccc--cCCCEEEE--cccc----ccchhheecccCcceEEecCCCeeEeCCCCcchhh-----hhcCC-CCCHHHHH
Confidence 444333 456 4444 3444 22222223444456665422111123578999999 99999 99999999
Q ss_pred HHHHHHHH
Q 009041 411 FAWTRGLE 418 (546)
Q Consensus 411 lS~ammL~ 418 (546)
-|.-++.+
T Consensus 314 ~Ai~lA~~ 321 (329)
T PRK01909 314 AAIDTAVT 321 (329)
T ss_pred HHHHHHHH
Confidence 88554433
No 40
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=83.91 E-value=0.73 Score=49.22 Aligned_cols=140 Identities=16% Similarity=0.061 Sum_probs=69.5
Q ss_pred eecHHHHHHHHHHHHHHHHcC-C--C-CEEEEeCCCccccchhHH-HHHHHHHH--HhhhccccccCCeEEe-eEehhHH
Q 009041 260 YNVDESIRAFAESSMSLAFSK-K--W-PLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDM 331 (546)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r-k--k-kVT~v~KaNVlk~tdGlF-rei~~eVa--~~eYP~~f~~~dI~~e-~~lVDa~ 331 (546)
.+|.+.+.+.++.+.+.-+++ + + |+-+. =-|==.--.|+| +|--+.+. =++.. +.++.++ -.--|.+
T Consensus 182 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~-GLNPHAGE~G~~G~EE~~iI~PAI~~~~----~~Gi~v~GP~paDt~ 256 (336)
T PRK05312 182 ALTPELIVATARITAADLRRRFGIASPRLAVA-GLNPHAGEGGALGREDIDIIAPAIEQLR----AEGIDARGPLPADTM 256 (336)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEE-eeCCCCCCCCCCcHHHHHHHHHHHHHHH----HCCCCccCCCCchhh
Confidence 478888998888888766632 3 2 33322 122212124666 33333221 01111 1133322 1222443
Q ss_pred HHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHH
Q 009041 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (546)
Q Consensus 332 amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~I 410 (546)
-.+-.+ +.| ++|+ ||=| .+---+=.+|+-.+.|+.-.--..---|-||||-| ||||| +|||.+++
T Consensus 257 F~~~~~--~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfD-----IAGkg-~A~~~S~~ 322 (336)
T PRK05312 257 FHAAAR--ATYDAAIC--MYHD----QALIPIKTLDFDGGVNVTLGLPFIRTSPDHGTAFD-----IAGKG-IARPDSLI 322 (336)
T ss_pred cccccc--cCCCEEEE--cccc----cCChhheecccCcceEEecCCCeeEeCCCCcchhh-----hhcCC-CCCHHHHH
Confidence 333222 456 4444 3444 21111222344455665421111123578999999 99999 99999999
Q ss_pred HHHHHHHH
Q 009041 411 FAWTRGLE 418 (546)
Q Consensus 411 lS~ammL~ 418 (546)
-|.-++.+
T Consensus 323 ~Ai~lA~~ 330 (336)
T PRK05312 323 AALRLAAQ 330 (336)
T ss_pred HHHHHHHH
Confidence 88554443
No 41
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=83.56 E-value=0.78 Score=48.70 Aligned_cols=137 Identities=13% Similarity=-0.006 Sum_probs=67.4
Q ss_pred eecHHHHHHHHHHHHHHHHcC-C--C-CEEEEeCCCccccchhHH-HHHHHHHH--HhhhccccccCCeEEee-EehhHH
Q 009041 260 YNVDESIRAFAESSMSLAFSK-K--W-PLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYEH-RLIDDM 331 (546)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r-k--k-kVT~v~KaNVlk~tdGlF-rei~~eVa--~~eYP~~f~~~dI~~e~-~lVDa~ 331 (546)
.+|.+.+.+.++.+.+.-++. + + |+-+. ==|==.--.|+| +|--+.+. -++.. +.++.++- .--|.+
T Consensus 170 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~-gLNPHAGE~G~~G~EE~~iI~PAI~~~~----~~G~~v~GP~paDt~ 244 (320)
T TIGR00557 170 ALTPELLVEKLRILHADLRRDFGIARPRIAVA-GLNPHAGEGGHLGREEIDIIIPALEALR----AEGIDLIGPLPADTL 244 (320)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEE-ecCCCCCCCCCCcHHHHHHHHHHHHHHH----HCCCcccCCCCchhh
Confidence 378888888888887766633 2 2 33222 122211124666 33222221 01111 11343321 122333
Q ss_pred HHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHH
Q 009041 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (546)
Q Consensus 332 amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~I 410 (546)
-.+-.+ +.| ++|+ ||=| .+--=+=.+|+--+.|+.-.--..---|-||||-| ||||| +|||.+++
T Consensus 245 F~~~~~--~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfD-----IAGkg-~A~~~S~~ 310 (320)
T TIGR00557 245 FHPAAL--AKYDAVLA--MYHD----QGLIPLKYLGFDEGVNVTLGLPFIRTSPDHGTAFD-----IAGKG-KADPGSLI 310 (320)
T ss_pred cccccc--cCCCEEEE--Cccc----ccchhheecccCcceEEecCCCeeEeCCCCcchhh-----hhcCC-CCCHHHHH
Confidence 322212 456 4444 3444 21111222344445665421111123588999999 99999 99999999
Q ss_pred HHHHH
Q 009041 411 FAWTR 415 (546)
Q Consensus 411 lS~am 415 (546)
-|.-+
T Consensus 311 ~Ai~~ 315 (320)
T TIGR00557 311 AAIKL 315 (320)
T ss_pred HHHHH
Confidence 87443
No 42
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=83.39 E-value=1.1 Score=47.81 Aligned_cols=139 Identities=14% Similarity=0.031 Sum_probs=69.6
Q ss_pred eecHHHHHHHHHHHHHHHHcCC--C-CEEEEeCCCccccchhHH-HHHHHHHH--HhhhccccccCCeEEee-EehhHHH
Q 009041 260 YNVDESIRAFAESSMSLAFSKK--W-PLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYEH-RLIDDMV 332 (546)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~rk--k-kVT~v~KaNVlk~tdGlF-rei~~eVa--~~eYP~~f~~~dI~~e~-~lVDa~a 332 (546)
.+|.+.+.+.++..-+.-++.+ + |+-+ -==|==.--.|+| +|--+.+. -++.. +.++.++- .=-|.+-
T Consensus 178 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV-~gLNPHAGE~G~~G~EE~~iI~PAI~~~~----~~G~~v~GP~paDt~F 252 (332)
T PRK00232 178 AITPERLEEVIRILHADLRRKGIAEPRIAV-CGLNPHAGEGGHFGREEIDIIIPALEELR----AEGINLVGPLPADTLF 252 (332)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCcEEE-EeeCCCCCCCCCCCHHHHHHHHHHHHHHH----hCCCCcCCCCCchhhc
Confidence 4788888888888877555333 2 3322 2122222124566 33222221 01111 11443322 2234443
Q ss_pred HHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHHH
Q 009041 333 AYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIF 411 (546)
Q Consensus 333 mqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~Il 411 (546)
.+-.+ +.| ++|+ ||=| .+--=+=-+++-.++|+.-.--..---|-||||-| ||||| +|||.+++-
T Consensus 253 ~~~~~--~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfD-----IAGkg-~A~~~S~~~ 318 (332)
T PRK00232 253 QPAYL--GDADAVLA--MYHD----QGLPVLKYLGFGRGVNITLGLPFIRTSVDHGTALD-----LAGKG-IADVGSFIT 318 (332)
T ss_pred ccccc--CCCCEEEE--Cccc----ccchhheecccCcceEEecCCCeeEeCCCCcchhh-----hhcCC-CCCHHHHHH
Confidence 33322 456 4444 3444 21111222344456665422111123588999999 99999 999999998
Q ss_pred HHHHHH
Q 009041 412 AWTRGL 417 (546)
Q Consensus 412 S~ammL 417 (546)
|.-++.
T Consensus 319 Ai~lA~ 324 (332)
T PRK00232 319 ALNLAI 324 (332)
T ss_pred HHHHHH
Confidence 855443
No 43
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=82.61 E-value=1.2 Score=47.42 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=31.6
Q ss_pred cccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHHHHHHHH
Q 009041 365 LGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRG 416 (546)
Q Consensus 365 lGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~amm 416 (546)
+|+--|.|+.-.--..---|-||||-| ||||| +|||.+++-|..++
T Consensus 277 l~Fd~~VNvtlGLPfiRTS~DHGTAfD-----iAgkG-iA~~~S~~~Ai~lA 322 (332)
T COG1995 277 LGFDRGVNVTLGLPFIRTSVDHGTAFD-----IAGKG-IADPGSLIAAIKLA 322 (332)
T ss_pred hccccceEEecCCCeeeecCCccchhh-----hhcCC-cCCchHHHHHHHHH
Confidence 344456676532211123578999999 99999 99999999774443
No 44
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=82.38 E-value=1.3 Score=47.33 Aligned_cols=140 Identities=15% Similarity=0.113 Sum_probs=71.6
Q ss_pred eecHHHHHHHHHHHHHHHHcCC--C-CEEEEeCCCccccchhHH-HHHHHHHH--HhhhccccccCCeEEee-EehhHHH
Q 009041 260 YNVDESIRAFAESSMSLAFSKK--W-PLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYEH-RLIDDMV 332 (546)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~rk--k-kVT~v~KaNVlk~tdGlF-rei~~eVa--~~eYP~~f~~~dI~~e~-~lVDa~a 332 (546)
.+|.+.+.+.++.+.+.-++-+ + |+-+. ==|==.--.|+| +|.-+.+. =++.. +.++.++- .--|.+-
T Consensus 178 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~-GLNPHAGE~G~~G~EE~~iI~PAI~~~~----~~g~~v~GP~paDt~F 252 (332)
T PRK03743 178 YVTKERVLDYIQRCTKALEKLGIKNPKIAVA-GLNPHSGEHGLFGDEEVDEIIPAVEAAQ----EMGINVEGPVPADSVF 252 (332)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCCEEEE-eeCCCCCCCCCCcHHHHHHHHHHHHHHH----HCCCcccCCCCchhhc
Confidence 4788999988888888666433 2 33221 122222224666 33322221 01111 11444332 2234443
Q ss_pred HHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHHH
Q 009041 333 AYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIF 411 (546)
Q Consensus 333 mqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~Il 411 (546)
.+-.+ +.| ++|+ ||=| .+---+=.+|+-.+.|+.-.--..---|-||||-| ||||| +|||.+++-
T Consensus 253 ~~~~~--~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfD-----IAGkg-~A~~~S~~~ 318 (332)
T PRK03743 253 HLALQ--GRYDAVLS--LYHD----QGHIATKTLDFERTIAITNGLPFLRTSVDHGTAFD-----IAGTG-KASSVSMEE 318 (332)
T ss_pred ccccc--cCCCEEEE--cccc----cCChhheecccCCceEEecCCCeeEeCCCCcchhh-----hhcCC-CCCHHHHHH
Confidence 33322 456 4444 3444 21111223444456665422111123588999999 99999 999999998
Q ss_pred HHHHHHH
Q 009041 412 AWTRGLE 418 (546)
Q Consensus 412 S~ammL~ 418 (546)
|.-++.+
T Consensus 319 Ai~lA~~ 325 (332)
T PRK03743 319 AILLAAK 325 (332)
T ss_pred HHHHHHH
Confidence 8555443
No 45
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=81.42 E-value=1.4 Score=47.19 Aligned_cols=143 Identities=12% Similarity=-0.012 Sum_probs=71.1
Q ss_pred eecHHHHHHHHHHHHHHHHcC-C--C-CEEEEeCCCccccchhHH-HHHHHHHH--HhhhccccccCCeEEee-EehhHH
Q 009041 260 YNVDESIRAFAESSMSLAFSK-K--W-PLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYEH-RLIDDM 331 (546)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r-k--k-kVT~v~KaNVlk~tdGlF-rei~~eVa--~~eYP~~f~~~dI~~e~-~lVDa~ 331 (546)
.+|.+.+.+.++.+.+.-++. + + |+-+ -==|==.--.|+| +|--+.+. =++...+- .++.++- .=-|.+
T Consensus 180 ~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV-~GLNPHAGE~G~~G~EE~~iI~PAIe~~r~~g--~g~~v~GP~paDt~ 256 (345)
T PRK02746 180 TLTPELITSKLDLLIDFLQRDFGIEKPRIAI-AGLNPHAGEQGQLGTEEKDWLIPWLESWRQKN--PDIQLLGPIPPDTC 256 (345)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCcEEE-EeeCCCCCCCCCCcHHHHHHHHHHHHHHHhcC--CCceeeCCCCchhh
Confidence 468888888887776655532 2 2 3332 2122222124565 33222221 01111100 0244432 233555
Q ss_pred HHHHhhC------CCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCcc
Q 009041 332 VAYAIKS------EGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETST 404 (546)
Q Consensus 332 amqLVk~------P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiA 404 (546)
-.+..+. .+.| ++|+ ||=| .+--=+=-+++-.++|+.-.--..---|-||||-| ||||| +|
T Consensus 257 F~~~~~~~~~~~~~~~~D~vva--MYHD----QGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfD-----IAGkg-~A 324 (345)
T PRK02746 257 WVSPAQAWYGKGVAEAPDGYLA--LYHD----QGLIPVKLMAFDRAVNTTIGLPFIRTSPDHGTAFD-----IAGKG-IA 324 (345)
T ss_pred ccccccccccccccCCCCEEEE--Cccc----CCChhheeeccCcceEEecCCCeeEeCCCCcchhh-----hhcCC-CC
Confidence 4444432 2457 5555 4544 21111223444456665422111123588999999 99999 99
Q ss_pred CchhHHHHHHHHH
Q 009041 405 NSIASIFAWTRGL 417 (546)
Q Consensus 405 NPiA~IlS~ammL 417 (546)
||.+|+-|.-++.
T Consensus 325 ~~~S~~~Ai~lA~ 337 (345)
T PRK02746 325 RPQSMKAAIKLAW 337 (345)
T ss_pred CHHHHHHHHHHHH
Confidence 9999998854443
No 46
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=79.74 E-value=1.3 Score=46.73 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=32.3
Q ss_pred cccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHHHHHHHHH
Q 009041 365 LGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGL 417 (546)
Q Consensus 365 lGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL 417 (546)
+++-.+.|+.-.--..---|-||||-| |||||.+|||.+|+-|.-++.
T Consensus 254 l~F~~gVnvTlGLP~iRTSpDHGTAfD-----IAGkg~~A~~~S~~~Ai~lA~ 301 (307)
T PRK03946 254 LYFDESINVSLNLPILRTSVDHGTAFD-----IAYKNAKANTKSYLNAIKYAI 301 (307)
T ss_pred eccCcceEEecCCCEeEecCCCCchhh-----hcCCCCcCCHHHHHHHHHHHH
Confidence 344455665421111123588999999 999998999999998854443
No 47
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=66.48 E-value=20 Score=41.34 Aligned_cols=116 Identities=17% Similarity=0.250 Sum_probs=75.4
Q ss_pred ccCCcccccccee-cCCCceeeeecCCCCCCCccccc-ccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeC
Q 009041 212 AFGDQYRATDTVI-KGPGKLKMVFDPEDGTGPVELDV-YNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTK 289 (546)
Q Consensus 212 ntEG~Y~g~e~~~-~~~g~~~~~~~~~~G~~~~~~~v-~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~K 289 (546)
..+|+|....... ...+.+++.|...+|.. ..++- -.....++.++.+++......|.+..++-|++.+--..+=-|
T Consensus 177 ~~gDFy~~EkSvt~~~a~~~~Ie~~~~~G~~-~vLK~~~~l~~gEviDat~ms~~aL~~F~~~~i~~Ak~~gvLfSlHlK 255 (741)
T TIGR00178 177 DNGDFYGSEKSATIDAAGSVKIELIAKDGSS-TVLKAKLPLLDGEIIDSSVMSKKALRNFIEEEIEDAKEEGVLLSLHLK 255 (741)
T ss_pred CCCCCcCCceeEEecCCCeEEEEEEcCCCCE-EEecCCCccCCCCEeehhhhCHHHHHHHHHHHHHHHHHcCcEEEeeeh
Confidence 3345555443322 45678888999888752 11110 011235677888899999999999999999887754444459
Q ss_pred CCccccchhH----H-HHHHHHHHHhhhccccccCCeEEeeEehh
Q 009041 290 NTILKKYDGR----F-KDIFQQVYEERWRQKFEEHSIWYEHRLID 329 (546)
Q Consensus 290 aNVlk~tdGl----F-rei~~eVa~~eYP~~f~~~dI~~e~~lVD 329 (546)
++.||.+|-. . +--|++++ +.|.+.|++.|+..+.=+-|
T Consensus 256 ATMMKVSDPIiFGhaV~vffkdvF-~k~~~~~~~~Gvn~nnGlgd 299 (741)
T TIGR00178 256 ATMMKVSDPIMFGHAVREFYKDAF-AKHAEVLKQLGVDVNNGIGD 299 (741)
T ss_pred heeecccCceehhHHHHHHHHHHH-HHHHHHHHHcCCCcCcchHH
Confidence 9999998852 2 22355666 46777777778776654444
No 48
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=63.37 E-value=7.3 Score=43.66 Aligned_cols=13 Identities=8% Similarity=-0.115 Sum_probs=10.9
Q ss_pred CCcEEEE----------eeccCC
Q 009041 203 KKPICIG----------RHAFGD 215 (546)
Q Consensus 203 ~vDiVIv----------REntEG 215 (546)
.+|++|+ |||+|+
T Consensus 211 ~iD~vi~~~g~~~~~~~rEnte~ 233 (483)
T PLN03065 211 ATDTVIKGPGKLKMVFVPEDGNA 233 (483)
T ss_pred ceEEEEecCCeeEEEeecCCCCC
Confidence 4788887 999997
No 49
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=60.52 E-value=4.7 Score=44.35 Aligned_cols=18 Identities=0% Similarity=-0.038 Sum_probs=17.2
Q ss_pred CCcEEEEeecc-CCccccc
Q 009041 203 KKPICIGRHAF-GDQYRAT 220 (546)
Q Consensus 203 ~vDiVIvREnt-EG~Y~g~ 220 (546)
++|++|+|||| ||+|.+.
T Consensus 143 ~id~vi~rent~e~~y~~~ 161 (413)
T PTZ00435 143 ATDFVVDGPGKLELVFTPA 161 (413)
T ss_pred ceEEEEecCCEEEEEEecC
Confidence 69999999999 9999998
No 50
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=58.20 E-value=11 Score=43.26 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=70.2
Q ss_pred eeccCCccccccce-ecCCCceeeeecCCCCCCCcccc-cccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEE
Q 009041 210 RHAFGDQYRATDTV-IKGPGKLKMVFDPEDGTGPVELD-VYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLS 287 (546)
Q Consensus 210 REntEG~Y~g~e~~-~~~~g~~~~~~~~~~G~~~~~~~-v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v 287 (546)
-...+|+|...... ....+.+++.|...+|. ...++ --.....++.++.+++.+....|.+...+-|++.+--..+=
T Consensus 171 ~M~~gDFy~nEkS~t~~~~~~~~Ie~~~~~G~-~~vLK~~~~l~~gEviDat~Ms~~aL~~F~~~~i~~AK~~~vLfSlH 249 (735)
T PF03971_consen 171 HMSGGDFYGNEKSVTVDKATTVRIEFVGKDGS-VTVLKEGLPLLAGEVIDATFMSAKALRAFYEEQIEDAKEEGVLFSLH 249 (735)
T ss_dssp --SSSSHHHH-EEEE-SSSEEEEEEEEETTS--EEEEEEEEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT-EEEE-
T ss_pred ecCCCCCCCCceEEEecCCCeEEEEEEcCCCC-EEeccCCCcCCCCcEeehhhccHHHHHHHHHHHHHHHHhcCCeEEee
Confidence 33445555443322 24577888889888875 22221 01112356788899999999999999999998877544455
Q ss_pred eCCCccccchhH-HH----HHHHHHHHhhhccccccCCeEEeeEeh
Q 009041 288 TKNTILKKYDGR-FK----DIFQQVYEERWRQKFEEHSIWYEHRLI 328 (546)
Q Consensus 288 ~KaNVlk~tdGl-Fr----ei~~eVa~~eYP~~f~~~dI~~e~~lV 328 (546)
-|++-||.+|-. |- --|.+|+ +.|.+.|++.||..+.=+-
T Consensus 250 lKATMMKVSDPIiFGhaV~v~f~~vF-~k~~~~~~~~Gvn~nnGlg 294 (735)
T PF03971_consen 250 LKATMMKVSDPIIFGHAVKVFFKDVF-EKHGDTFKELGVNPNNGLG 294 (735)
T ss_dssp B-TTTSTTHHHHHHHHHHHHHCHHHH-HHCHHHHHHCT-SCCCHHH
T ss_pred ehhhhhhccCccHHHHHHHHHHHHHH-HHHHHHHHHcCCCcccCHH
Confidence 599999999863 32 2255666 4677788877876554443
No 51
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=37.78 E-value=1.7e+02 Score=28.47 Aligned_cols=76 Identities=9% Similarity=-0.014 Sum_probs=50.2
Q ss_pred CccHHHHHHHHHHHHhcCCCceeEEEEe----cchhhhh---h-cCCCCc----HHHHHHHHhcCeEEEecccCCCccch
Q 009041 94 DEMTRIIWQMIKDKLIFPYLDLDIKYYD----LGILNRD---A-TDDKVT----VESAEATLKYNVAIKCATITPDETRM 161 (546)
Q Consensus 94 DGIGpEI~~~~~~~l~~~~~~i~~~~~d----lG~~~~d---~-tg~~lp----~etleaik~~daiLkGav~tP~~~~~ 161 (546)
+|-+..+.+++++-+...+.++++.... .+...-+ . ....++ ++.++.++++|++++| ||.+
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~g---sPvy--- 86 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFG---SPVY--- 86 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEe---CCee---
Confidence 7999999999998877677766665543 1222211 1 113344 5566679999999986 4653
Q ss_pred hhccccccCCCchHHHHHhcCc
Q 009041 162 KEFGLKSMWRSPNGTIRNILNG 183 (546)
Q Consensus 162 ~e~~l~~~~~spn~~LRk~LdL 183 (546)
|.....+++.-+|-
T Consensus 87 --------~g~vsa~~K~fiDR 100 (207)
T COG0655 87 --------FGNVSAQMKAFIDR 100 (207)
T ss_pred --------cCCchHHHHHHHhh
Confidence 34566788888885
No 52
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=36.76 E-value=1.3e+02 Score=27.17 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=53.1
Q ss_pred cEEEEcC----CccHHHHHHHHHHHHhcCCCceeEEEEecchh---hhhh------cCCCCcHHHHHHHHhcCeEEEecc
Q 009041 87 PIVEMDG----DEMTRIIWQMIKDKLIFPYLDLDIKYYDLGIL---NRDA------TDDKVTVESAEATLKYNVAIKCAT 153 (546)
Q Consensus 87 ~I~vlpG----DGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~---~~d~------tg~~lp~etleaik~~daiLkGav 153 (546)
+|++|-| +|.+..+.+++++.+...+ ++.+.+++..- ..+. .-+.-.++..+.++++|++|.+.
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s- 78 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS- 78 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE-
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee-
Confidence 4666666 4899999999998876554 56666666531 1111 12233467789999999999854
Q ss_pred cCCCccchhhccccccCCCchHHHHHhcCcE
Q 009041 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (546)
Q Consensus 154 ~tP~~~~~~e~~l~~~~~spn~~LRk~LdLy 184 (546)
|.+ |.++...+.+-||-.
T Consensus 79 --P~y-----------~~~~s~~lK~~lD~~ 96 (152)
T PF03358_consen 79 --PVY-----------NGSVSGQLKNFLDRL 96 (152)
T ss_dssp --EEB-----------TTBE-HHHHHHHHTH
T ss_pred --cEE-----------cCcCChhhhHHHHHh
Confidence 543 345667777777753
No 53
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=36.66 E-value=1.4e+02 Score=29.18 Aligned_cols=84 Identities=12% Similarity=0.039 Sum_probs=51.8
Q ss_pred cEEEEcC----CccHHHHHHHHHHHHhcCCCceeEEE-Eecchhhhh--hcCCCCcHHHHHHHHhcCeEEEecccCCCcc
Q 009041 87 PIVEMDG----DEMTRIIWQMIKDKLIFPYLDLDIKY-YDLGILNRD--ATDDKVTVESAEATLKYNVAIKCATITPDET 159 (546)
Q Consensus 87 ~I~vlpG----DGIGpEI~~~~~~~l~~~~~~i~~~~-~dlG~~~~d--~tg~~lp~etleaik~~daiLkGav~tP~~~ 159 (546)
+|++|-| .+-..-+.+.+.+.+...+.++++.. .++..+... ..+.+--.+..+.++++|++|. ++|.+
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi---~tP~Y- 77 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIV---ATPVY- 77 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEE---ECCcc-
Confidence 4677766 36667777777776665565443222 122211111 1223344577888999999997 46765
Q ss_pred chhhccccccCCCchHHHHHhcCcE
Q 009041 160 RMKEFGLKSMWRSPNGTIRNILNGT 184 (546)
Q Consensus 160 ~~~e~~l~~~~~spn~~LRk~LdLy 184 (546)
|.|....|++-||..
T Consensus 78 ----------~~s~pg~LKn~iD~l 92 (191)
T PRK10569 78 ----------KASFSGALKTLLDLL 92 (191)
T ss_pred ----------CCCCCHHHHHHHHhC
Confidence 457778999999965
No 54
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=31.98 E-value=2.5e+02 Score=26.52 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=49.6
Q ss_pred cEEEEcC----CccHHHHHHHHHHHHhc-CCCceeEEEEecchh--hhhh--cCCCCc---HHHHHHHHhcCeEEEeccc
Q 009041 87 PIVEMDG----DEMTRIIWQMIKDKLIF-PYLDLDIKYYDLGIL--NRDA--TDDKVT---VESAEATLKYNVAIKCATI 154 (546)
Q Consensus 87 ~I~vlpG----DGIGpEI~~~~~~~l~~-~~~~i~~~~~dlG~~--~~d~--tg~~lp---~etleaik~~daiLkGav~ 154 (546)
+|++|-| ++....+.+.+.+.+.. .+ .+++.+|+..- .+.. .....| .+..+.++++|+++. +
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g--~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi---~ 75 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLG--ISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVV---G 75 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcC--CeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEE---E
Confidence 4666666 36777777777765542 34 34444554321 1110 011244 467788999999996 5
Q ss_pred CCCccchhhccccccCCCchHHHHHhcCcE
Q 009041 155 TPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (546)
Q Consensus 155 tP~~~~~~e~~l~~~~~spn~~LRk~LdLy 184 (546)
||.+ |.+.-..|.+-||..
T Consensus 76 tP~Y-----------~~s~~~~LKn~lD~~ 94 (174)
T TIGR03566 76 SPVY-----------RGSYTGLFKHLFDLV 94 (174)
T ss_pred CCcC-----------cCcCcHHHHHHHHhc
Confidence 6765 346678899999953
No 55
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=31.86 E-value=2.3e+02 Score=26.81 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=48.2
Q ss_pred EEEEcC----CccHHHHHHHHHHHHhcCCCceeEEE-Eecchhhhhh--cCCCCcHHHHHHHHhcCeEEEecccCCCccc
Q 009041 88 IVEMDG----DEMTRIIWQMIKDKLIFPYLDLDIKY-YDLGILNRDA--TDDKVTVESAEATLKYNVAIKCATITPDETR 160 (546)
Q Consensus 88 I~vlpG----DGIGpEI~~~~~~~l~~~~~~i~~~~-~dlG~~~~d~--tg~~lp~etleaik~~daiLkGav~tP~~~~ 160 (546)
|++|-| ++-...+.+.+.+.+...+.+++... .++....... ...+-.++..+.++++|+++. +||.+
T Consensus 2 il~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~---~sP~Y-- 76 (171)
T TIGR03567 2 VLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVV---ATPVY-- 76 (171)
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEE---ECCcc--
Confidence 556655 47777777777776654454433222 1222211111 111223566788889999997 45765
Q ss_pred hhhccccccCCCchHHHHHhcCcE
Q 009041 161 MKEFGLKSMWRSPNGTIRNILNGT 184 (546)
Q Consensus 161 ~~e~~l~~~~~spn~~LRk~LdLy 184 (546)
|.+.-..|++-+|..
T Consensus 77 ---------~~sip~~LK~~iD~~ 91 (171)
T TIGR03567 77 ---------KASYSGVLKALLDLL 91 (171)
T ss_pred ---------cCCCCHHHHHHHHhC
Confidence 456668888888853
No 56
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=28.22 E-value=74 Score=36.23 Aligned_cols=114 Identities=19% Similarity=0.295 Sum_probs=68.3
Q ss_pred CCccccccce-ecCCCceeeeecCCCCCCCcccc-cccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEE-eCC
Q 009041 214 GDQYRATDTV-IKGPGKLKMVFDPEDGTGPVELD-VYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLS-TKN 290 (546)
Q Consensus 214 EG~Y~g~e~~-~~~~g~~~~~~~~~~G~~~~~~~-v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v-~Ka 290 (546)
+|+|.+.... ....+.+++.|+..+|.. ..++ -..+...++.++++.+.+....|...-.+-|+..+- +.+. -|+
T Consensus 181 gDFf~~Eks~~l~~a~~v~ie~~~kdG~~-~vlk~~~~l~~geiiD~~~mskkaL~~F~~~q~~dak~~gV-lfSlH~KA 258 (744)
T COG2838 181 GDFFHNEKSMTLDQATDVRIEFTAKDGKK-KVLKPPVALQDGEIIDATFMSKKALCAFYEEQMQDAKATGV-LFSLHLKA 258 (744)
T ss_pred CcccccceeeeeccCccEEEEEEecCCcE-EEecCccccccccchHHHHhhHHHHHHHHHHHHHhhhhcCe-EEeehhhh
Confidence 4555544322 235677788888877752 1111 001112445666777877777666655565655543 3333 499
Q ss_pred Cccccchh----HHHHH-HHHHHHhhhccccccCCeEEeeEehhH
Q 009041 291 TILKKYDG----RFKDI-FQQVYEERWRQKFEEHSIWYEHRLIDD 330 (546)
Q Consensus 291 NVlk~tdG----lFrei-~~eVa~~eYP~~f~~~dI~~e~~lVDa 330 (546)
+.||.+|- -+-++ +.++. .+|.++|++.||..+.-+.|-
T Consensus 259 TMMKVSdPiiFGhaVk~fyk~~f-~k~~~~f~~lGvn~nNGl~~l 302 (744)
T COG2838 259 TMMKVSDPIIFGHAVKVFYKDVF-AKHGDLFDALGVNVNNGLSDL 302 (744)
T ss_pred hhhhccCceehhHHHHHHHHHHH-HHHHHHHHHhCCCccccHHHH
Confidence 99998874 33333 44555 578888999999888777654
No 57
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=25.48 E-value=55 Score=35.18 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=18.3
Q ss_pred ecccEEEEcCC--ccHHHHHHHHH
Q 009041 84 VQNPIVEMDGD--EMTRIIWQMIK 105 (546)
Q Consensus 84 v~~~I~vlpGD--GIGpEI~~~~~ 105 (546)
|.++|++--|| ||||||+-.++
T Consensus 1 ~~~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 1 MTKIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CCCcEEEeCCCCcchHHHHHHHHh
Confidence 45789999999 99999886654
No 58
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=23.96 E-value=3.8e+02 Score=29.39 Aligned_cols=128 Identities=18% Similarity=0.275 Sum_probs=71.3
Q ss_pred hhCCCCeeeeccCCcchhhh-hhHhhhcCCccccc-ccccCCCCCceeecccccccccchhhcccCCCCccCchhHHHH-
Q 009041 336 IKSEGGYVWACKNYDGDVQS-DLLAQGFGSLGLMT-SVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFA- 412 (546)
Q Consensus 336 Vk~P~~FVIVt~NlfGDILS-DlaA~l~GslGlap-Sanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS- 412 (546)
+.++.+-.++.+||=||+|- ++|+.+.-.-|+-. ..-+++|.++ .+.+++.-+ +| +| +++|-
T Consensus 93 v~~~~GvLlivkNYtGDvlNF~mAaE~a~~eGi~v~~V~V~DDva~---~~~~~~~gR--------RG-lA---Gtvlv~ 157 (356)
T PRK11468 93 VDGGEGVLLIIKNYTGDVLNFETATELLHDSGVKVTTVLIDDDVAV---KDSLYTAGR--------RG-VA---NTVLIE 157 (356)
T ss_pred hcCCCCEEEEecccHHhhccHHHHHHHHHhCCCcEEEEEeCCcccC---CCCcCCCCC--------cc-hh---HHHHHH
Confidence 45777888899999999985 67777665555532 3345666542 333333222 34 44 23321
Q ss_pred -HHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHH------------cCCCCc-------chhcccCC-CCCCCccccCHH
Q 009041 413 -WTRGLEHRAKLDKNERLLHFVQKLEAACIEAVE------------TGKMTK-------DLAILVHG-PKVSREFYLNTE 471 (546)
Q Consensus 413 -~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~------------~G~~T~-------DLg~~~~G-~~~~~~~~asT~ 471 (546)
.+-+....| .+ |.+..+.-++++..+-. .|.-+- .+|..+|| +...|....+..
T Consensus 158 KiaGAaAe~G-~s----L~ev~~~a~~~~~~~~TiGvaL~~ctvP~~~~~~f~L~~~emE~GmGIHGEpG~~r~~~~~a~ 232 (356)
T PRK11468 158 KLVGAAAERG-YS----LDQCAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLD 232 (356)
T ss_pred HHHHHHHhCC-CC----HHHHHHHHHHHHHhcceeeeeccccccCCCCCCCcccCCCcEEeccccCCCCccccCCCCCHH
Confidence 111112222 11 44555555555544211 121121 24666888 577777778888
Q ss_pred HHHHHHHHHHHh
Q 009041 472 EFIDAVATNLGA 483 (546)
Q Consensus 472 ef~daV~~~L~~ 483 (546)
|+++.+++.|-.
T Consensus 233 elv~~l~~~ll~ 244 (356)
T PRK11468 233 QTVDEMFDTLLE 244 (356)
T ss_pred HHHHHHHHHHHc
Confidence 999999888854
No 59
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=22.39 E-value=72 Score=26.39 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=26.6
Q ss_pred ccccccccccccCCceeE--------Eeeeeccccccccceee
Q 009041 496 DTACRLRRTCSIGSNFTL--------LQVFYCISQILRGHEFF 530 (546)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 530 (546)
.++...--||+-|.+|+| --|--|||-+|-=|-+|
T Consensus 16 ~e~~~ftyPCPCGDRFeIsLeDl~~GE~VArCPSCSLiv~vvy 58 (67)
T COG5216 16 REEKTFTYPCPCGDRFEISLEDLRNGEVVARCPSCSLIVCVVY 58 (67)
T ss_pred CCCceEEecCCCCCEeEEEHHHhhCCceEEEcCCceEEEEEEe
Confidence 344555678999999999 35888999998766555
No 60
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.14 E-value=38 Score=37.04 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=14.5
Q ss_pred ccccceeeeeecccccc
Q 009041 523 ILRGHEFFIALHNFTSH 539 (546)
Q Consensus 523 ~~~~~~~~~~~~~~~~~ 539 (546)
+|+|+-|-||||||+--
T Consensus 126 ~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 126 ILTGAKFIIDWHNYGYS 142 (444)
T ss_pred HHhcceEEEEehhhHHH
Confidence 68999999999998753
No 61
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=22.06 E-value=76 Score=29.96 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=25.5
Q ss_pred cEEEEcCC--ccHHHHHHHHHHHHhcCCCceeEEEEecchhh
Q 009041 87 PIVEMDGD--EMTRIIWQMIKDKLIFPYLDLDIKYYDLGILN 126 (546)
Q Consensus 87 ~I~vlpGD--GIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~ 126 (546)
+|+||+|. |||..+++.+++.+ +=+++-+-+|..+
T Consensus 1 ~I~VIDGQGGGiG~~iv~~lr~~~-----~~~~eI~AlGTNa 37 (131)
T PF12953_consen 1 RIAVIDGQGGGIGKQIVEKLRKEL-----PEEVEIIALGTNA 37 (131)
T ss_pred CEEEEeCCCChhHHHHHHHHHHhC-----CCCcEEEEEehhH
Confidence 58999998 89999999888754 2245556666543
No 62
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=20.68 E-value=81 Score=33.95 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=17.6
Q ss_pred cccEEEEcCC--ccHHHHHHHHH
Q 009041 85 QNPIVEMDGD--EMTRIIWQMIK 105 (546)
Q Consensus 85 ~~~I~vlpGD--GIGpEI~~~~~ 105 (546)
+.+|++--|| ||||||+-.++
T Consensus 4 ~p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 4 KPRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CCcEEEeCCCCcccHHHHHHHHH
Confidence 4678999999 99999987664
No 63
>PRK01355 azoreductase; Reviewed
Probab=20.56 E-value=3.9e+02 Score=25.91 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=46.9
Q ss_pred cEEEEcC------CccHHHHHHHHHHHHhcCCCceeEEEEecchhhh----------hhc-CCCCcHHHHHHHHhcCeEE
Q 009041 87 PIVEMDG------DEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNR----------DAT-DDKVTVESAEATLKYNVAI 149 (546)
Q Consensus 87 ~I~vlpG------DGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~----------d~t-g~~lp~etleaik~~daiL 149 (546)
+|++|-| .+.+..+.++.++.+...+...+++.+|+..... ... ...-.++..+.++++|+++
T Consensus 3 kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV 82 (199)
T PRK01355 3 KVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDKVV 82 (199)
T ss_pred eEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCEEE
Confidence 4566655 3556677777776665432234444444432211 001 1122356778899999999
Q ss_pred EecccCCCccchhhccccccCCCchHHHHHhcCc
Q 009041 150 KCATITPDETRMKEFGLKSMWRSPNGTIRNILNG 183 (546)
Q Consensus 150 kGav~tP~~~~~~e~~l~~~~~spn~~LRk~LdL 183 (546)
++ +|.+ |-+.-..|..-+|-
T Consensus 83 ~~---sP~y-----------~~~ipa~LK~~iDr 102 (199)
T PRK01355 83 IS---CPMT-----------NFNVPATLKNYLDH 102 (199)
T ss_pred EE---cCcc-----------ccCChHHHHHHHHH
Confidence 74 5654 44555777777775
No 64
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=20.39 E-value=1.9e+02 Score=31.04 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCCeEEeeEehhH
Q 009041 271 ESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDD 330 (546)
Q Consensus 271 r~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI~~e~~lVDa 330 (546)
.||+|+|+ ||.+|.++- + +-..-..+..|+. ++|+ +++.-..+|=
T Consensus 64 ayA~eLAk-rG~nvvLIs-----R-t~~KL~~v~kEI~-~~~~-------vev~~i~~Df 108 (312)
T KOG1014|consen 64 AYARELAK-RGFNVVLIS-----R-TQEKLEAVAKEIE-EKYK-------VEVRIIAIDF 108 (312)
T ss_pred HHHHHHHH-cCCEEEEEe-----C-CHHHHHHHHHHHH-HHhC-------cEEEEEEEec
Confidence 47999998 788898876 3 4555688899997 5776 7777777764
Done!