Query 009041
Match_columns 546
No_of_seqs 179 out of 1516
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us8_A Isocitrate dehydrogenas 100.0 9E-118 3E-122 943.1 33.4 402 79-486 24-426 (427)
2 1lwd_A Isocitrate dehydrogenas 100.0 5E-115 2E-119 920.9 34.0 407 80-486 3-411 (413)
3 4aoy_A Isocitrate dehydrogenas 100.0 4E-115 1E-119 916.9 32.1 399 80-483 2-400 (402)
4 2uxq_A Isocitrate dehydrogenas 100.0 2E-114 8E-119 912.8 32.6 398 81-483 2-399 (402)
5 1zor_A Isocitrate dehydrogenas 100.0 5E-111 2E-115 887.1 35.0 395 80-485 2-399 (399)
6 2qfy_A Isocitrate dehydrogenas 100.0 2E-108 7E-113 873.0 32.6 406 79-486 16-424 (427)
7 1x0l_A Homoisocitrate dehydrog 100.0 1E-104 5E-109 819.8 35.1 327 86-483 2-332 (333)
8 2d1c_A Isocitrate dehydrogenas 100.0 2E-104 8E-109 848.6 34.6 380 79-537 9-401 (496)
9 3flk_A Tartrate dehydrogenase/ 100.0 1E-103 3E-108 821.5 32.9 342 84-483 4-362 (364)
10 2y3z_A 3-isopropylmalate dehyd 100.0 2E-103 7E-108 817.7 31.0 333 86-485 4-351 (359)
11 3u1h_A 3-isopropylmalate dehyd 100.0 1E-102 5E-107 816.7 33.1 342 83-482 21-377 (390)
12 1wpw_A 3-isopropylmalate dehyd 100.0 1E-102 4E-107 806.2 32.0 326 86-481 2-335 (336)
13 3ty4_A Probable homoisocitrate 100.0 2E-102 7E-107 811.2 33.9 332 85-482 10-365 (366)
14 1cnz_A IPMDH, IMDH, protein (3 100.0 7E-102 2E-106 808.0 32.5 340 86-483 5-361 (363)
15 3blx_A Isocitrate dehydrogenas 100.0 1E-102 5E-107 808.6 27.4 330 81-483 13-348 (349)
16 3blx_B Isocitrate dehydrogenas 100.0 7E-103 2E-107 812.4 24.9 329 81-481 17-354 (354)
17 3udu_A 3-isopropylmalate dehyd 100.0 4E-102 1E-106 808.4 30.2 336 86-483 7-357 (361)
18 3vmk_A 3-isopropylmalate dehyd 100.0 7E-102 2E-106 809.6 31.6 345 85-483 13-373 (375)
19 2e0c_A 409AA long hypothetical 100.0 4E-102 1E-106 820.4 28.8 363 80-482 17-407 (409)
20 3dms_A Isocitrate dehydrogenas 100.0 8E-102 3E-106 821.5 30.2 359 86-481 37-426 (427)
21 3r8w_A 3-isopropylmalate dehyd 100.0 7E-102 2E-106 815.1 29.4 346 83-486 40-402 (405)
22 1hqs_A Isocitrate dehydrogenas 100.0 5E-102 2E-106 822.0 27.0 369 80-481 12-422 (423)
23 1vlc_A 3-isopropylmalate dehyd 100.0 3E-101 9E-106 803.2 29.0 336 86-483 13-364 (366)
24 1a05_A IPMDH, IMDH, 3-isopropy 100.0 3E-101 9E-106 802.5 28.7 341 86-484 2-357 (358)
25 1w0d_A 3-isopropylmalate dehyd 100.0 7E-101 2E-105 793.6 30.7 329 86-481 2-337 (337)
26 2iv0_A Isocitrate dehydrogenas 100.0 9E-101 3E-105 810.3 31.6 363 80-482 20-410 (412)
27 2d4v_A Isocitrate dehydrogenas 100.0 4E-101 1E-105 816.0 28.9 366 80-481 19-429 (429)
28 1tyo_A Isocitrate dehydrogenas 100.0 2E-100 6E-105 812.5 31.7 354 86-483 36-423 (435)
29 1itw_A Isocitrate dehydrogenas 97.5 0.0032 1.1E-07 68.9 17.5 218 215-448 418-645 (741)
30 2b0t_A NADP isocitrate dehydro 97.5 0.0032 1.1E-07 68.8 17.3 186 252-448 448-641 (738)
31 1yxo_A 4-hydroxythreonine-4-ph 86.2 0.41 1.4E-05 49.5 3.4 139 260-417 174-321 (328)
32 3lxy_A 4-hydroxythreonine-4-ph 86.1 0.41 1.4E-05 49.6 3.4 135 260-418 179-327 (334)
33 2hi1_A 4-hydroxythreonine-4-ph 86.0 0.41 1.4E-05 49.5 3.3 139 260-416 181-326 (330)
34 4aty_A Terephthalate 1,2-CIS-d 85.7 0.43 1.5E-05 49.4 3.3 135 260-417 196-339 (349)
35 3tsn_A 4-hydroxythreonine-4-ph 78.6 1.1 3.9E-05 46.9 3.3 49 365-418 314-362 (367)
36 2b0t_A NADP isocitrate dehydro 71.0 6.5 0.00022 43.5 6.8 111 209-321 172-289 (738)
37 1itw_A Isocitrate dehydrogenas 69.8 3.9 0.00013 45.2 4.8 118 209-328 174-298 (741)
38 2qfy_A Isocitrate dehydrogenas 64.3 1.1 3.6E-05 47.9 -0.9 16 203-218 156-171 (427)
39 3u7r_A NADPH-dependent FMN red 45.9 51 0.0018 30.7 7.5 83 84-184 1-93 (190)
40 3k1y_A Oxidoreductase; structu 33.9 1E+02 0.0036 28.5 7.5 85 86-184 12-111 (191)
41 1yxo_A 4-hydroxythreonine-4-ph 22.0 49 0.0017 34.1 3.0 21 84-104 1-23 (328)
42 2q62_A ARSH; alpha/beta, flavo 21.7 1.5E+02 0.005 28.7 6.3 83 86-184 35-124 (247)
No 1
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=9.5e-118 Score=943.13 Aligned_cols=402 Identities=66% Similarity=1.132 Sum_probs=376.1
Q ss_pred ccceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCc
Q 009041 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (546)
Q Consensus 79 ~~ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~ 158 (546)
.+||||++||++|||||||||||++++++|.+++++|+|+++|+|.++++++|+++|+|++++|+++||+||||++||.+
T Consensus 24 ~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~ 103 (427)
T 3us8_A 24 MAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDE 103 (427)
T ss_dssp -CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred cccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCc
Confidence 46999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred cchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCC
Q 009041 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (546)
Q Consensus 159 ~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~ 238 (546)
++++||+++++|+|+|++|||+||||||+|||.++++|++.++|++|||||||||||+|+|.|+...++|+.++.|.+++
T Consensus 104 ~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~ 183 (427)
T 3us8_A 104 GRVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGED 183 (427)
T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred cccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeeccc
Confidence 88999999999999999999999999999998668999998888999999999999999999999877899999998888
Q ss_pred CCCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhcccccc
Q 009041 239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (546)
Q Consensus 239 G~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~ 318 (546)
| ++.+..+++|++.+++++++||++++|||+|+||+||++|++|||+|||+||||.|||||+++|+|||+++||++|++
T Consensus 184 G-~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~ 262 (427)
T 3us8_A 184 G-QTIEHDVYDAPGAGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKA 262 (427)
T ss_dssp S-CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred c-ccccccccccCCCcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCC
Confidence 7 456667788887888888999999999999999999999999999999999999999999999999995599999999
Q ss_pred CCeEEeeEehhHHHHHHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhccc
Q 009041 319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (546)
Q Consensus 319 ~dI~~e~~lVDa~amqLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IA 398 (546)
++|+++|+|||+|+||||++|++|||||+|||||||||++|+++|||||+||+|||+++.+++|||+||||||||+++||
T Consensus 263 ~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~iA 342 (427)
T 3us8_A 263 EKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQK 342 (427)
T ss_dssp TTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHHT
T ss_pred CCeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchhcC
Confidence 99999999999999999999999999999999999999999999999999999999987557999999999999999999
Q ss_pred CCCCc-cCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHH
Q 009041 399 GQETS-TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAV 477 (546)
Q Consensus 399 GK~ti-ANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV 477 (546)
||| + |||+|+||||+|||+|+|++++|+++.++|++|++||.+++++|++|+|||.+. ++ ..+.++|+||+|+|
T Consensus 343 Gk~-i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~-~~---~~~~~~T~e~~daV 417 (427)
T 3us8_A 343 GEE-TSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESGFMTKDLALLI-GP---DQPWLSTTGFLDKI 417 (427)
T ss_dssp TCC-CCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHH-CT---TCCCBCHHHHHHHH
T ss_pred CCC-ceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCCcCccccccc-cc---CCcccCHHHHHHHH
Confidence 999 7 999999999999999999998889999999999999999999999999998211 01 12369999999999
Q ss_pred HHHHHhhhc
Q 009041 478 ATNLGAKLR 486 (546)
Q Consensus 478 ~~~L~~~~~ 486 (546)
+++|++++.
T Consensus 418 ~~~l~~~l~ 426 (427)
T 3us8_A 418 DENLRKAMA 426 (427)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 999987763
No 2
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=4.5e-115 Score=920.87 Aligned_cols=407 Identities=66% Similarity=1.140 Sum_probs=372.8
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCcc
Q 009041 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (546)
Q Consensus 80 ~ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~ 159 (546)
+||+|++||++|||||||||||++++++|+.++++|+|+++++|.++++++|+++|++++++|+++||+||||++||+++
T Consensus 3 ~~i~~~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~ 82 (413)
T 1lwd_A 3 QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEA 82 (413)
T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcceecccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCcc
Confidence 59999999999999999999999999999988999999999999999999999999999999999999999999999987
Q ss_pred chhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCCC
Q 009041 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (546)
Q Consensus 160 ~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G 239 (546)
+++++.++++|+|+|++||++||||||+|||+++++|++.++|++||||+||||||+|+|.++.+.++|+.++.|.+++|
T Consensus 83 ~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g 162 (413)
T 1lwd_A 83 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDG 162 (413)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTC
T ss_pred cCccccccccccCccHHHHHhcCCEEEEeeeeccCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCC
Confidence 77777677789999999999999999999987789998888889999999999999999999998888888888988777
Q ss_pred CCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccC
Q 009041 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (546)
Q Consensus 240 ~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~ 319 (546)
..+.+..+++++.++++++++||+++++||+|+||+||++|++|||+|||+||||.|||||+++|+|||+++||++|++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~ 242 (413)
T 1lwd_A 163 SSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKY 242 (413)
T ss_dssp CCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cccccccccccCCCcEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccCC
Confidence 54455556666556788889999999999999999999999999999999999999999999999999956999888888
Q ss_pred CeEEeeEehhHHHHHHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccC
Q 009041 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (546)
Q Consensus 320 dI~~e~~lVDa~amqLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAG 399 (546)
+|+++|+|||+|+||||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+||||||||++||||
T Consensus 243 ~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~~~aG 322 (413)
T 1lwd_A 243 KIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKG 322 (413)
T ss_dssp TCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHTT
T ss_pred eEEEEEEEHHHHHHHHhcCCCceEEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeCCCCChhhhhhhhhcC
Confidence 89999999999999999999999999999999999999999999999999999999885469999999999999999999
Q ss_pred CCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCC-CCCCCc-cccCHHHHHHHH
Q 009041 400 QETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHG-PKVSRE-FYLNTEEFIDAV 477 (546)
Q Consensus 400 K~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G-~~~~~~-~~asT~ef~daV 477 (546)
||++|||+|+||||+|||+|+|..+.|+++.++|++|++||.+++++|++|+|||.+.+| +++++. +.++|+||+|+|
T Consensus 323 k~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~~~~T~e~~daV 402 (413)
T 1lwd_A 323 RPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTI 402 (413)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHHHH
T ss_pred CCCccChHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHHcCCcCcccccccCCcccccccCCCCCHHHHHHHH
Confidence 993399999999999999999988888888999999999999999999999999733224 222222 368999999999
Q ss_pred HHHHHhhhc
Q 009041 478 ATNLGAKLR 486 (546)
Q Consensus 478 ~~~L~~~~~ 486 (546)
+++|++++.
T Consensus 403 ~~~l~~~~~ 411 (413)
T 1lwd_A 403 KSNLDRALG 411 (413)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999976653
No 3
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=4.3e-115 Score=916.90 Aligned_cols=399 Identities=53% Similarity=0.915 Sum_probs=348.5
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCcc
Q 009041 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (546)
Q Consensus 80 ~ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~ 159 (546)
.||||++||++|||||||||+|+.++++++.++++|+|+++|+|.+++++||+++|+|++++|+++||+||||++||.++
T Consensus 2 ~~i~~~~~i~~i~GDei~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~~ 81 (402)
T 4aoy_A 2 SKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQ 81 (402)
T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcccccCcEEEECCCchHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCcc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCCC
Q 009041 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (546)
Q Consensus 160 ~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G 239 (546)
+++|++|+++|+|||++|||+||||||+|||.++++|++.++|++|||||||||||+|+|.|++..++|++++.|.+++|
T Consensus 82 ~~~~~~l~~~~~s~n~~LR~~Ldlyan~rPv~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~g 161 (402)
T 4aoy_A 82 RVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENG 161 (402)
T ss_dssp HHHHTTCSSCCCCHHHHHHHHHTCEEEEEECCCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETTS
T ss_pred ccccccccccccChHHHHHHHhCCeEEeeeEeccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccCC
Confidence 99999999999999999999999999999986678887777788999999999999999999998889999999999887
Q ss_pred CCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccC
Q 009041 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (546)
Q Consensus 240 ~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~ 319 (546)
.+ .+.++++|+.+++++++++|+++++||+|+||+||++|+++||+|||+||||.|||+|+++|+|||+++||++|+++
T Consensus 162 ~~-~~~~~~~~~~~gv~~~~~~t~~~~eRiar~AF~~A~~~~~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~~~ 240 (402)
T 4aoy_A 162 EV-SRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAK 240 (402)
T ss_dssp CE-EEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cc-cccccccccCCeeEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEECCccchhhhhHHHHHHHHHHHHhCcccccCC
Confidence 53 45567778778899999999999999999999999999999999999999999999999999999955999999999
Q ss_pred CeEEeeEehhHHHHHHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccC
Q 009041 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (546)
Q Consensus 320 dI~~e~~lVDa~amqLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAG 399 (546)
+|+++|++||+|+||||++|++|||||+|||||||||++|+++|||||+||+|+|+++. ++|||+||||||||+++|||
T Consensus 241 ~i~~~~~~vD~~~~~lv~~P~~fVivt~Nl~GDIlSD~~A~l~GslGl~psanig~~~~-~~fEp~HGSApd~~~~~iaG 319 (402)
T 4aoy_A 241 NLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGK-YEFEAAHGTVTRHYYKHLKG 319 (402)
T ss_dssp TCCEEEEEHHHHHHHHHTSCBCSEEECCC-CHHHHHHHHHHHHSCTTSEEEEEECTTCC-EEEEC---------------
T ss_pred CeEEEEEEHHHHHHHHhhCCCCcEEEECCcchHHHHHHHHHhcCchhhccccccCCCCc-eEEeeccCCccccchhhccC
Confidence 99999999999999999999999999999999999999999999999999999998874 69999999999999999999
Q ss_pred CCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHHH
Q 009041 400 QETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVAT 479 (546)
Q Consensus 400 K~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~~ 479 (546)
||++|||+|+||||+|||+|+|.+++|+++.++|++|++||.+++++|++|+|||...+| ...+.++|+||+|+|++
T Consensus 320 k~~~aNP~A~Ils~a~mL~~~g~~~~~~~l~~~A~~ie~Av~~~l~~g~~T~Dlgg~~~~---~~~~~~~T~ef~~av~~ 396 (402)
T 4aoy_A 320 EETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQASVQTIENGVMTKDLASLSEV---PEKKIVNTEDFLKEIRK 396 (402)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTEEEHHHHTTCCC---SCCEEECHHHHHHHHHH
T ss_pred CCcCcCcHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHcCCCCccccccccc---CCCCCcCHHHHHHHHHH
Confidence 993399999999999999999999988889999999999999999999999999821111 12245799999999999
Q ss_pred HHHh
Q 009041 480 NLGA 483 (546)
Q Consensus 480 ~L~~ 483 (546)
+|++
T Consensus 397 ~l~~ 400 (402)
T 4aoy_A 397 TFEG 400 (402)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9964
No 4
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=2.3e-114 Score=912.80 Aligned_cols=398 Identities=46% Similarity=0.818 Sum_probs=366.6
Q ss_pred ceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccc
Q 009041 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (546)
Q Consensus 81 ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~ 160 (546)
||||++||++|||||||||||++++++|++++++|+|+++++|.++++++|+++|+|++++|+++||+||||++||.+++
T Consensus 2 ~~~~~~~i~~i~GDgig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~ 81 (402)
T 2uxq_A 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDR 81 (402)
T ss_dssp CBCCSSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred ceeeecceEEecCCCccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCCCC
Q 009041 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (546)
Q Consensus 161 ~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~ 240 (546)
+++++++++|+|+|++||++||||||+|||+++++|++.++|++||||+||||||+|+|.++...++|+.++.|.+++|
T Consensus 82 ~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g- 160 (402)
T 2uxq_A 82 VEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNG- 160 (402)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTS-
T ss_pred CccccccccccCchHHHHHHhCCeEEEEEEEcCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCC-
Confidence 8887777789999999999999999999987788888777788999999999999999999998788888888888776
Q ss_pred CCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCC
Q 009041 241 GPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (546)
Q Consensus 241 ~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~d 320 (546)
...+..+++|+.+++++++++|+++++||+|+||+||++|++|||+|||+||||.|||||+++|+|||+++||++|++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~ 240 (402)
T 2uxq_A 161 KETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAG 240 (402)
T ss_dssp CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHT
T ss_pred ccccccccccCCCceEEEEEECHHHHHHHHHHHHHHHHHcCCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCCe
Confidence 34455566666678888899999999999999999999999999999999999999999999999999669998888888
Q ss_pred eEEeeEehhHHHHHHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCC
Q 009041 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQ 400 (546)
Q Consensus 321 I~~e~~lVDa~amqLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK 400 (546)
|+++|+|||+|+||||++|++|||||+|||||||||++|+++|||||+||+|+|+++. +||||+||||||++++|||||
T Consensus 241 I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~-~lfEpvHGSAPdi~~~~~aGk 319 (402)
T 2uxq_A 241 IEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYGY-FEYEAAHGTVQRHYYQHLKGE 319 (402)
T ss_dssp CCEEEEEHHHHHHHHTTCCCCSEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSC-EEEECCSCCCHHHHHHHHTTC
T ss_pred EEEEEEEHHHHHHHHccCCCceEEEEcccchHHHHHHHHHhcCCccccccceecCCCC-eEEeCCCCChhhhhhhhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999883 699999999999999999999
Q ss_pred CCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHHHH
Q 009041 401 ETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATN 480 (546)
Q Consensus 401 ~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~~~ 480 (546)
|++|||+|+||||+|||+|+|..+.|+++.++|++|++||.+|+++|++|+|||.+.+|. +.+.++|+||+|+|+++
T Consensus 320 ~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~Dlgg~~~g~---~~~~~~T~e~~daI~~~ 396 (402)
T 2uxq_A 320 RTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESGYMTGDLARICEPA---AIKVLDSIEFIDELGKR 396 (402)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTEECHHHHTTCSSC---CSEECCHHHHHHHHHHH
T ss_pred CcccCcHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCCcCccccccCCCC---CCCCcCHHHHHHHHHHH
Confidence 933999999999999999999888888899999999999999999999999998322231 12358999999999999
Q ss_pred HHh
Q 009041 481 LGA 483 (546)
Q Consensus 481 L~~ 483 (546)
|++
T Consensus 397 l~~ 399 (402)
T 2uxq_A 397 LQQ 399 (402)
T ss_dssp HHH
T ss_pred Hhh
Confidence 954
No 5
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=4.7e-111 Score=887.12 Aligned_cols=395 Identities=51% Similarity=0.893 Sum_probs=356.9
Q ss_pred cceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCcc
Q 009041 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (546)
Q Consensus 80 ~ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~ 159 (546)
.||+|++||++|||||||||||++++++|+.++++|+|+++++|.++++++|+++|++++++|+++||+||||++||.++
T Consensus 2 ~~~~~~~~I~~l~GDgiG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~~ 81 (399)
T 1zor_A 2 EKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAE 81 (399)
T ss_dssp CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcccccccEEEecCCcccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCCC
Q 009041 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (546)
Q Consensus 160 ~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G 239 (546)
+++++.++++|+|+|++||++||||||+|||+++++|++.++|++||||+||||||+|++.++...++++.++.|.++.
T Consensus 82 ~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e~- 160 (399)
T 1zor_A 82 RVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKE- 160 (399)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHTCEEEEEECCBTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSS-
T ss_pred cCccccccccccCchHHHHHHhCCEEEEEEeecCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEeccc-
Confidence 6777667778999999999999999999998778888887778899999999999999999988877888888887631
Q ss_pred CCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHh---hhcccc
Q 009041 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE---RWRQKF 316 (546)
Q Consensus 240 ~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~---eYP~~f 316 (546)
..+..+++++.+++++++++|+++++||+|+||+||++|++|||+|||+||||.|||||+++|+|||++ +||+
T Consensus 161 --~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~yp~-- 236 (399)
T 1zor_A 161 --NKTLLVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELEK-- 236 (399)
T ss_dssp --CEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHHHH--
T ss_pred --cccceeeccCCceEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECcccHHHHHHHHHHHHHHHHHhhcccCCC--
Confidence 122334555556788889999999999999999999999999999999999999999999999999942 7882
Q ss_pred ccCCeEEeeEehhHHHHHHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhc
Q 009041 317 EEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLH 396 (546)
Q Consensus 317 ~~~dI~~e~~lVDa~amqLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~ 396 (546)
++|+++|+|||+|+||||++|++|||||+|||||||||++|+++|||||+||+|||+++. +||||+|||||||++++
T Consensus 237 --~~I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~-~~fEpvHGSAPdi~~~~ 313 (399)
T 1zor_A 237 --AGVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGV-YEFEAAHGTVRRHYYRY 313 (399)
T ss_dssp --TTCCEEEEEHHHHHHHHHHSCCCSEEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTCC-EEEEESSCCCHHHHHHH
T ss_pred --CcEEEEEEEHHHHHHHhccCCCceEEEEccchHHHHHHHHHHhcCCccccceeEecCCCC-eEEeCCCCcccccchhh
Confidence 259999999999999999999999999999999999999999999999999999999884 69999999999999999
Q ss_pred ccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHH
Q 009041 397 QKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDA 476 (546)
Q Consensus 397 IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~da 476 (546)
|||||++|||+|+|||++|||+|+|+.+.|+++.++|++|++||.+++++|++|+|||.+.+|. ..+.++|+||+|+
T Consensus 314 iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~~g~---~~~~~~T~e~~da 390 (399)
T 1zor_A 314 LKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESGVITKDLQPFTEPP---IDKYVTLEEFIDE 390 (399)
T ss_dssp TTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCGGGGGGCSSC---CCCCCCHHHHHHH
T ss_pred hcCCCCccCcHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHcCCcCccccccCCCC---CCCCCCHHHHHHH
Confidence 9999933999999999999999999888788889999999999999999999999998322231 1124799999999
Q ss_pred HHHHHHhhh
Q 009041 477 VATNLGAKL 485 (546)
Q Consensus 477 V~~~L~~~~ 485 (546)
|+++|+++|
T Consensus 391 V~~~l~~~~ 399 (399)
T 1zor_A 391 VKKNLEKLL 399 (399)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhhC
Confidence 999997653
No 6
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=2e-108 Score=872.97 Aligned_cols=406 Identities=65% Similarity=1.063 Sum_probs=349.8
Q ss_pred ccceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCc
Q 009041 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (546)
Q Consensus 79 ~~ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~ 158 (546)
.+||+|++||++|||||||||||++++++++.++++|+|+++++|+++++++|+++|++++++|+++||+||||++||.+
T Consensus 16 ~~k~~~~~~I~~l~GDgig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~ 95 (427)
T 2qfy_A 16 FSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDE 95 (427)
T ss_dssp CCCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred cccccceeeEEEecCCCHHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCC
Confidence 35999999999999999999999999998888899999999999999999999999999999999999999999999987
Q ss_pred cchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCC
Q 009041 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (546)
Q Consensus 159 ~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~ 238 (546)
.+++|++|+++|+|+|++|||+||||+|+||++++++|++.++|+.|++|+||+++|+|.+.+..+..+++..+.|.+++
T Consensus 96 ~~~~e~~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnteg~Y~~~e~ 175 (427)
T 2qfy_A 96 ARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSD 175 (427)
T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESC
T ss_pred cccchhhhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCccceeeeccc
Confidence 77777777788999999999999999999998878898887766555555555555555555544443333333333333
Q ss_pred --CCCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhcccc
Q 009041 239 --GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (546)
Q Consensus 239 --G~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f 316 (546)
|..+.+..++++++.+++..+++|+++++||+|+||+||++|++|||+|||+||||.|||||+++|+|||+++||++|
T Consensus 176 teG~~~~~~~~~~~~~~~v~~~~~~T~~~ieRIar~AFe~A~~r~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~~ 255 (427)
T 2qfy_A 176 PTTAQPQTLKVYDYKGSGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKF 255 (427)
T ss_dssp TTTSCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred cCCccccccccccCCCceEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCccchhhhHHHHHHHHHHHHHhCCCcc
Confidence 322122223344445677768999999999999999999999999999999999999999999999999866999888
Q ss_pred ccCCeEEeeEehhHHHHHHhhCCCCeeeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhc
Q 009041 317 EEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLH 396 (546)
Q Consensus 317 ~~~dI~~e~~lVDa~amqLVk~P~~FVIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~ 396 (546)
++.+|+++|+|||+|+||||++|++|||||+|||||||||++|+++|||||+||+|||++++.++|||+||||||||+++
T Consensus 256 ~~~~I~~e~~~VD~~amqlV~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~d 335 (427)
T 2qfy_A 256 EQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKY 335 (427)
T ss_dssp HHHTCCEEEEEHHHHHHHHHHSCEEEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHH
T ss_pred cCCeEEEEEEEHHHHHHHHHhCCCceEEEECccchHHHHHHHHHhcCcccccceeEeCCCCceeEecCCCCCcccccchh
Confidence 88889999999999999999999999999999999999999999999999999999999885579999999999999999
Q ss_pred ccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHH-cCCCCcchhcccCCCCCCCccccCHHHHHH
Q 009041 397 QKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVE-TGKMTKDLAILVHGPKVSREFYLNTEEFID 475 (546)
Q Consensus 397 IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~-~G~~T~DLg~~~~G~~~~~~~~asT~ef~d 475 (546)
|||||++|||+|+||||+|||+|+|++++|+++.++|++|++||.++++ +|++|+|||.+. | +..+.+.++|+||+|
T Consensus 336 iAGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~~G~~T~Dlgg~~-g-~~~~~~~~~T~e~~d 413 (427)
T 2qfy_A 336 QKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALAC-G-NNERSAYVTTEEFLD 413 (427)
T ss_dssp HTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHT-T-CCSGGGCCCHHHHHH
T ss_pred hcCCCCccCcHHHHHHHHHHHHHhCcccCcchhHHHHHHHHHHHHHHHHhCCCccccccccC-C-ccccCCCCCHHHHHH
Confidence 9999933999999999999999999988889999999999999999999 999999998211 2 111223589999999
Q ss_pred HHHHHHHhhhc
Q 009041 476 AVATNLGAKLR 486 (546)
Q Consensus 476 aV~~~L~~~~~ 486 (546)
+|+++|++++.
T Consensus 414 aV~~~l~~~l~ 424 (427)
T 2qfy_A 414 AVEKRLQKEIK 424 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999977654
No 7
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=1.4e-104 Score=819.75 Aligned_cols=327 Identities=20% Similarity=0.221 Sum_probs=306.6
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchhhcc
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~e~~ 165 (546)
++|++||||||||||+++++++|.+.+++++|+++++|.++++++|+++|++++++|+++|++||||++||.+++
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~----- 76 (333)
T 1x0l_A 2 YRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKV----- 76 (333)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCC-----
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCC-----
Confidence 579999999999999999999998889999999999999999999999999999999999999999999997543
Q ss_pred ccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC-CCcEEEEeeccCCccccccceecCCCceeeeecCCCCCCCcc
Q 009041 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (546)
Q Consensus 166 l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~-~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~~~~ 244 (546)
.+|+|+|++|||+||||||+||+ +++| +.+++ ++|||||||||||+|+|.++. .
T Consensus 77 --~~~~s~~l~lR~~ldlyan~RP~--~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~------------------- 131 (333)
T 1x0l_A 77 --PGFFGAIRYLRRRLDLYANVRPA--KSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-Y------------------- 131 (333)
T ss_dssp --TTCCCHHHHHHHHTTCCEEEEEE--ECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-E-------------------
T ss_pred --cCccChhHHHHHHcCCEEEEEEE--eecc-CCCCCCCCCEEEEecCccceecccccc-C-------------------
Confidence 24889999999999999999995 6788 76665 599999999999999998754 1
Q ss_pred cccccccCCceEE-EEeecHHHHHHHHHHHHHHHHcC-CCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCCeE
Q 009041 245 LDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIW 322 (546)
Q Consensus 245 ~~v~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r-kkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI~ 322 (546)
++++. .++||++++|||+|+||+||++| ++|||+|||+||||.+||||+++|+||| ++|| +|+
T Consensus 132 --------~~~a~~~~~~T~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva-~eyp------~I~ 196 (333)
T 1x0l_A 132 --------LDVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVA-KDFP------LVN 196 (333)
T ss_dssp --------TTEEEEEEEEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHH-TTCT------TSE
T ss_pred --------CCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEecCccchhhhHHHHHHHHHHH-HHCC------Cce
Confidence 23554 58999999999999999999999 6899999999999999999999999999 7999 999
Q ss_pred EeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCC
Q 009041 323 YEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQE 401 (546)
Q Consensus 323 ~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~ 401 (546)
++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ .||||+|||||| |||||
T Consensus 197 ~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~--a~fEp~HGSAPd-----iaGk~ 269 (333)
T 1x0l_A 197 VQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDTT--AVFEPVHGSAPD-----IAGKG 269 (333)
T ss_dssp EEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECSSC--EEEEESSCCCGG-----GTTSS
T ss_pred EEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcCCcccceeeEECCCc--eEEeCCCCChhh-----hcCCC
Confidence 99999999999999999999 99999999999999999999999999999999987 489999999999 99999
Q ss_pred CccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHHHHH
Q 009041 402 TSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNL 481 (546)
Q Consensus 402 tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~~~L 481 (546)
+|||+|+|||++|||+|+| +.++|++|++||.+++++|++|+||| | +++|+||+|+|+++|
T Consensus 270 -iANP~A~IlS~ammL~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~Dlg----G-------~~~T~e~~daV~~~l 330 (333)
T 1x0l_A 270 -IANPTAAILSAAMMLDYLG-------EKEAAKRVEKAVDLVLERGPRTPDLG----G-------DATTEAFTEAVVEAL 330 (333)
T ss_dssp -CCCCHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHSCCCGGGT----C-------CCCHHHHHHHHHHHH
T ss_pred -CcCcHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHcCCccCccC----C-------CCCHHHHHHHHHHHH
Confidence 9999999999999999999 68899999999999999999999998 8 689999999999999
Q ss_pred Hh
Q 009041 482 GA 483 (546)
Q Consensus 482 ~~ 483 (546)
++
T Consensus 331 ~~ 332 (333)
T 1x0l_A 331 KS 332 (333)
T ss_dssp HT
T ss_pred hh
Confidence 64
No 8
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-104 Score=848.61 Aligned_cols=380 Identities=21% Similarity=0.222 Sum_probs=338.2
Q ss_pred ccceeec----ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcC-CCCcHHHHHHHHhcCeEEEecc
Q 009041 79 IDRVKVQ----NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCAT 153 (546)
Q Consensus 79 ~~ki~v~----~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg-~~lp~etleaik~~daiLkGav 153 (546)
.+||+|. ++|++||||||||||+++++++|.+.+++|+|+++++|.++++++| +++|+|++++|+++||+||||+
T Consensus 9 ~~~i~~~~~g~~~IavipGDGIGpEV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGav 88 (496)
T 2d1c_A 9 GKKMHVLEDGRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPL 88 (496)
T ss_dssp SCEEEECTTSCEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCC
T ss_pred CceeEeccCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCc
Confidence 5799997 7899999999999999999999988899999999999999999999 9999999999999999999999
Q ss_pred cCCCccchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC---CCcEEEEeeccCCccccccceecCCCce
Q 009041 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW---KKPICIGRHAFGDQYRATDTVIKGPGKL 230 (546)
Q Consensus 154 ~tP~~~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~---~vDiVIvREntEG~Y~g~e~~~~~~g~~ 230 (546)
+||.+. +|+|+|++||++||||||+|| ++++|++.+++ ++|+|||||||||+|+|.++...
T Consensus 89 gtP~~~---------~~~s~~l~LRk~LdLyaNlRP--~k~~pgl~splk~~~vD~vIVREnTEG~Y~G~e~~~~----- 152 (496)
T 2d1c_A 89 ETPVGY---------GEKSANVTLRKLFETYANVRP--VREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQT----- 152 (496)
T ss_dssp CCCSSS---------SSCCHHHHHHHHTTCCEEEEE--EECBTTBCCTTTTSCCEEEEEEECSSBGGGCCEEEEE-----
T ss_pred cCCCcc---------cccChHHHHHHHhCCEEEEEE--EeecCCCCccccCCCccEEEEeeCcCceEeceeEecC-----
Confidence 999743 489999999999999999999 57788887665 59999999999999999876531
Q ss_pred eeeecCCCCCCCcccccccccCCceEEE-EeecHHHHHHHHHHHHHHHHcC-CCCEEEEeCCCccccchhHHHHHHHHHH
Q 009041 231 KMVFDPEDGTGPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVY 308 (546)
Q Consensus 231 ~~~~~~~~G~~~~~~~v~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~r-kkkVT~v~KaNVlk~tdGlFrei~~eVa 308 (546)
++++.. ++||++++|||+|+||+||++| ++|||+|||+||||.+||||+++|+||+
T Consensus 153 ----------------------~~va~~~~v~Tr~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa 210 (496)
T 2d1c_A 153 ----------------------PSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVA 210 (496)
T ss_dssp ----------------------TTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ----------------------CCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHHHHHH
Confidence 356665 6799999999999999999999 6899999999999999999999999998
Q ss_pred HhhhccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeeccccc
Q 009041 309 EERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHG 387 (546)
Q Consensus 309 ~~eYP~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HG 387 (546)
++|| +|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .||||+||
T Consensus 211 -~eYP------dI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSanig~~~--a~FEpvHG 281 (496)
T 2d1c_A 211 -QEYP------DIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEV--AIFEAVHG 281 (496)
T ss_dssp -TTCT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEECSSC--EEEEESSC
T ss_pred -HHCC------CceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHHHHHHhcCCcccCcEEEECCCC--ceeeCCCC
Confidence 7999 99999999999999999999999 99999999999999999999999999999999987 48999999
Q ss_pred ccccchhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcC-CCCcchhcccCCCCCCCcc
Q 009041 388 TVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREF 466 (546)
Q Consensus 388 SAPd~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLg~~~~G~~~~~~~ 466 (546)
|||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++| ++|+||| |.. +
T Consensus 282 SAPD-----IAGk~-iANP~A~IlSaamML~hlG-------~~~~A~~Ie~AV~~vl~~G~~~T~DLg----g~~----~ 340 (496)
T 2d1c_A 282 SAPK-----YAGKN-VINPTAVLLSAVMMLRYLE-------EFATADLIENALLYTLEEGRVLTGDVV----GYD----R 340 (496)
T ss_dssp CCTT-----TTTSS-CCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTSSCBHHHH----CTT----T
T ss_pred chhh-----hcCCC-ccCcHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcCCeeccccC----CCC----C
Confidence 9999 99999 9999999999999999999 6789999999999999999 7999998 620 2
Q ss_pred ccCHHHHHHHHHHHHHhhhcCCceEEEecccccccccccccCCceeE-Eeeeeccccccccceeeeeecccc
Q 009041 467 YLNTEEFIDAVATNLGAKLREPAMVILVLDTACRLRRTCSIGSNFTL-LQVFYCISQILRGHEFFIALHNFT 537 (546)
Q Consensus 467 ~asT~ef~daV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 537 (546)
.++|+||+|+|+++|++++...+.+..-. .-.+.+.- .+++-...+-|+|.|+|++| .-+
T Consensus 341 ~~sT~e~~daV~~~L~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~vgvd~~~~~-~~~ 401 (496)
T 2d1c_A 341 GAKTTEYTEAIIQNLGKTPRKTQVRGYKP----------FRLPQVDGAIAPIVPRSRRVVGVDVFVET-NLL 401 (496)
T ss_dssp CBCHHHHHHHHHHTTTCCCSSSCCCCCCC----------CCCCCGGGSCCCCCCSCEEEEEEEEEEEC-CSC
T ss_pred CcCHHHHHHHHHHHHhhhhhcCCcccccc----------cccccccccccccCCcceeEEEEeeeeec-CCC
Confidence 57999999999999987776443322111 01222222 23455578999999999999 543
No 9
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=1e-103 Score=821.48 Aligned_cols=342 Identities=17% Similarity=0.163 Sum_probs=310.3
Q ss_pred ecccEEEEcCCccHHHHHHHHHHHHhc----CCCceeEEEEecch-hhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCc
Q 009041 84 VQNPIVEMDGDEMTRIIWQMIKDKLIF----PYLDLDIKYYDLGI-LNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (546)
Q Consensus 84 v~~~I~vlpGDGIGpEI~~~~~~~l~~----~~~~i~~~~~dlG~-~~~d~tg~~lp~etleaik~~daiLkGav~tP~~ 158 (546)
|.++|++||||||||||+++++++|.+ .+++|+|+++++|. ++++++|+++|++++++|+++|++||||++||.+
T Consensus 4 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 4 HSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp -CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 457899999999999999999998844 26899999999999 9999999999999999999999999999999974
Q ss_pred cchhhccccccC--CCchHHHHHhcCcEEEeeecccccCCCCCCCC------CCcEEEEeeccCCccccccceecCCCce
Q 009041 159 TRMKEFGLKSMW--RSPNGTIRNILNGTVFREPILCQNIPRIVPGW------KKPICIGRHAFGDQYRATDTVIKGPGKL 230 (546)
Q Consensus 159 ~~~~e~~l~~~~--~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~------~vDiVIvREntEG~Y~g~e~~~~~~g~~ 230 (546)
. +++| +|+|++|||+||||||+|| ++.+|++.+++ ++|||||||||||+|+|.++... .
T Consensus 84 ~-------~~~~~~~s~~l~LR~~ldlyanvRP--~~~~pg~~splk~~~~~~vD~vivREnteG~Y~g~~~~~~-~--- 150 (364)
T 3flk_A 84 V-------PDHISLWGSLLKFRREFDQYVNIRP--VRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMF-E--- 150 (364)
T ss_dssp B-------CHHHHHHTTHHHHHHHTTCCEEEEE--EECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEES-T---
T ss_pred C-------CCCcCcccchHHHHHHhCCeEEEEE--EeccCCcccccccccCCCCCEEEEeeCCCceecCcCceec-c---
Confidence 1 1123 6899999999999999999 46788876553 69999999999999999876542 1
Q ss_pred eeeecCCCCCCCcccccccccCCceEE-EEeecHHHHHHHHHHHHHHHHcCCC-CEEEEeCCCccccchhHHHHHHHHHH
Q 009041 231 KMVFDPEDGTGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKKW-PLYLSTKNTILKKYDGRFKDIFQQVY 308 (546)
Q Consensus 231 ~~~~~~~~G~~~~~~~v~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~rkk-kVT~v~KaNVlk~tdGlFrei~~eVa 308 (546)
| .+++++. .++||++++|||+|+||+||++|++ |||+|||+||||.+||||+++|+|||
T Consensus 151 --------~-----------~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva 211 (364)
T 3flk_A 151 --------N-----------TENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMA 211 (364)
T ss_dssp --------T-----------STTCEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHH
T ss_pred --------C-----------CCCCEEEEEEEECHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHH
Confidence 1 0245665 5899999999999999999999965 79999999999999999999999998
Q ss_pred HhhhccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCC-ceeecccc
Q 009041 309 EERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAH 386 (546)
Q Consensus 309 ~~eYP~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a-~~~FEp~H 386 (546)
++|| +|+++|+|||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++. ++||||+|
T Consensus 212 -~eyp------dv~~~~~~vD~~am~lv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~~~a~fEp~H 284 (364)
T 3flk_A 212 -AHYP------HVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVH 284 (364)
T ss_dssp -TTCT------TCEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESS
T ss_pred -HHCC------CceEEeeEHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCCcccccccccCCCCCcceEEecCC
Confidence 7999 99999999999999999999999 999999999999999999999999999999998863 46999999
Q ss_pred cccccchhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCcc
Q 009041 387 GTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREF 466 (546)
Q Consensus 387 GSAPd~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~ 466 (546)
||||| ||||| +|||+|+|||++|||+|+|++| +++.++|++|++||.+++++|++|+||| |
T Consensus 285 GSAPd-----iAGk~-iANP~A~IlS~ammL~~lg~~~--~~~~~~A~~Ie~Av~~~l~~G~~T~Dlg----g------- 345 (364)
T 3flk_A 285 GSAPD-----IFGKN-IANPIAMIWSGALMLEFLGQGD--ERYQRAHDDMLNAIERVIADGSVTPDMG----G------- 345 (364)
T ss_dssp CCCTT-----TTTSS-CCCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTCCCGGGT----C-------
T ss_pred CCchh-----hcCCC-ccCcHHHHHHHHHHHHHhCccc--chhHHHHHHHHHHHHHHHHcCCCCcccC----C-------
Confidence 99999 99999 9999999999999999999876 5678999999999999999999999998 8
Q ss_pred ccCHHHHHHHHHHHHHh
Q 009041 467 YLNTEEFIDAVATNLGA 483 (546)
Q Consensus 467 ~asT~ef~daV~~~L~~ 483 (546)
.++|+||+|+|+++|++
T Consensus 346 ~~~T~e~~~aV~~~l~~ 362 (364)
T 3flk_A 346 TLSTQQVGAAISDTLAR 362 (364)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 79999999999999964
No 10
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=1.9e-103 Score=817.75 Aligned_cols=333 Identities=20% Similarity=0.200 Sum_probs=305.8
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccch
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~ 161 (546)
++|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||++||.++++
T Consensus 4 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~~~ 83 (359)
T 2y3z_A 4 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGL 83 (359)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCccccC
Confidence 68999999999999999999988653 68999999999999999999999999999999999999999999987665
Q ss_pred hhccccccCCCchHHHHHhcCcEEEeeecccccCCCCC--CCC------CCcEEEEeeccCCccccccceecCCCceeee
Q 009041 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW------KKPICIGRHAFGDQYRATDTVIKGPGKLKMV 233 (546)
Q Consensus 162 ~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~--~~~------~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~ 233 (546)
++ .++ .|++ |++|||+||||||+|| ++++||+. +++ ++|||||||||||+|+|.++.. +
T Consensus 84 ~~-~~~-~~~~-~l~LR~~ldlyanvRP--~~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~-~------- 150 (359)
T 2y3z_A 84 PR-KIR-PETG-LLSLRKSQDLFANLRP--AKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGM-S------- 150 (359)
T ss_dssp CG-GGC-HHHH-HHHHHHHTTEEEEEEE--EECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEE-C-------
T ss_pred Cc-ccc-cchh-HHHHHHHhCCEEEEEE--eeccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcC-C-------
Confidence 43 222 3566 9999999999999999 47789873 332 5999999999999999987642 1
Q ss_pred ecCCCCCCCcccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhh
Q 009041 234 FDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (546)
Q Consensus 234 ~~~~~G~~~~~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eY 312 (546)
++++ ..++||++++|||+|+||+||++|++|||+|||+|||| ++|||+++|+||| ++|
T Consensus 151 -------------------~~~a~~~~~~T~~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~ey 209 (359)
T 2y3z_A 151 -------------------EAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLE-VGEFWRKTVEEVG-RGY 209 (359)
T ss_dssp -------------------SSCEECCCCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TTC
T ss_pred -------------------CceEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-ccHHHHHHHHHHH-HHC
Confidence 2344 45889999999999999999999999999999999999 9999999999999 899
Q ss_pred ccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeeccccccccc
Q 009041 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391 (546)
Q Consensus 313 P~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd 391 (546)
| +|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||++++ ||||+||||||
T Consensus 210 p------dI~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~--~fEpvHGSAPd 281 (359)
T 2y3z_A 210 P------DVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTP--VFEPVHGSAPD 281 (359)
T ss_dssp T------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEEEESSCC--EEEESSCCCGG
T ss_pred C------cEEEEeeEHHHHHHHHhhCcccccEEEEcCcchHHHHHHHHHhcCcccccceeEeCCCCc--eeecCCCChhh
Confidence 9 99999999999999999999999 999999999999999999999999999999999884 89999999999
Q ss_pred chhhcccCCCCccCchhHHHHHHHHHHh-hhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCH
Q 009041 392 HFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNT 470 (546)
Q Consensus 392 ~~~~~IAGK~tiANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT 470 (546)
||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++| +|+||| | +++|
T Consensus 282 -----iAGk~-iANP~A~IlS~ammL~~slg-------~~~~A~~Ie~Av~~~l~~g-~T~Dlg----g-------~~~T 336 (359)
T 2y3z_A 282 -----IAGKG-IANPTAAILSAAMMLEHAFG-------LVELARKVEDAVAKALLET-PPPDLG----G-------SAGT 336 (359)
T ss_dssp -----GTTSS-CSCTHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHS-CCGGGT----C-------CCCH
T ss_pred -----hCCCC-CcCCHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHcC-CCCccC----C-------CCCH
Confidence 99999 99999999999999999 99 6889999999999999999 999998 8 6899
Q ss_pred HHHHHHHHHHHHhhh
Q 009041 471 EEFIDAVATNLGAKL 485 (546)
Q Consensus 471 ~ef~daV~~~L~~~~ 485 (546)
+||+|+|+++|++++
T Consensus 337 ~e~~daV~~~l~~~~ 351 (359)
T 2y3z_A 337 EAFTATVLRHLAAAA 351 (359)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999997664
No 11
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=1.4e-102 Score=816.72 Aligned_cols=342 Identities=20% Similarity=0.213 Sum_probs=300.9
Q ss_pred eecccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCc
Q 009041 83 KVQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (546)
Q Consensus 83 ~v~~~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~ 158 (546)
+|.++|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.+
T Consensus 21 ~M~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg~P~~ 100 (390)
T 3u1h_A 21 AMKKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVGGPKW 100 (390)
T ss_dssp ---CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECCCSTT
T ss_pred CccceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc
Confidence 57789999999999999999999988554 78999999999999999999999999999999999999999999987
Q ss_pred cchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCC--CCC------CCcEEEEeeccCCccccccceecCCCce
Q 009041 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW------KKPICIGRHAFGDQYRATDTVIKGPGKL 230 (546)
Q Consensus 159 ~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~--~~~------~vDiVIvREntEG~Y~g~e~~~~~~g~~ 230 (546)
++++. ...+.++|++|||+||||||+|| ++.+||+. +++ ++|||||||||||+|+|.++....+
T Consensus 101 ~~~~~---~~~~~~~ll~LRk~ldLyANvRP--~k~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~~~--- 172 (390)
T 3u1h_A 101 DQNPS---ELRPEKGLLGIRKGLDLFANLRP--VKVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEE--- 172 (390)
T ss_dssp TSSCC---SSSSSCCHHHHHHHTTEEEEEEE--EECCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC-------CT---
T ss_pred CCCCc---ccCccchHHHHHHHhCCeEEEEE--eeccCCccccCCcccccccCCcEEEEeeCCCCeecCccccccCC---
Confidence 54321 01134789999999999999999 57788875 432 6999999999999999988764211
Q ss_pred eeeecCCCCCCCcccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHH
Q 009041 231 KMVFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYE 309 (546)
Q Consensus 231 ~~~~~~~~G~~~~~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~ 309 (546)
+.+++ ..++|||+++|||+|+||+||++|++|||+|||+||| .+||||+++|+|||
T Consensus 173 ---------------------g~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVl-~t~glfr~~~~eva- 229 (390)
T 3u1h_A 173 ---------------------GEEAAVDTLLYTREEIERIIRKAFELALTRKKKVTSVDKANVL-ESSRLWREVAEEVA- 229 (390)
T ss_dssp ---------------------TCSEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTC-HHHHHHHHHHHHHH-
T ss_pred ---------------------CCceEEEEEEecHHHHhHHHHHHHHHHHHcCCceEEEECCccc-ccchHHHHHHHHHH-
Confidence 12344 4589999999999999999999999999999999999 69999999999999
Q ss_pred hhhccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccc
Q 009041 310 ERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGT 388 (546)
Q Consensus 310 ~eYP~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGS 388 (546)
++|| +|+++|+|||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ .+||||+|||
T Consensus 230 ~eYP------dV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGS 302 (390)
T 3u1h_A 230 KEYP------DVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDG-LGLYEPVHGS 302 (390)
T ss_dssp TTCT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCTTTCEEEEEETTS-CEEEEESSCC
T ss_pred hHCC------CCeEEeeeHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCchhhcceeeecCCC-CeeEecCCCC
Confidence 7999 99999999999999999999999 99999999999999999999999999999999875 3699999999
Q ss_pred cccchhhcccCCCCccCchhHHHHHHHHHHh-hhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccc
Q 009041 389 VTRHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFY 467 (546)
Q Consensus 389 APd~~~~~IAGK~tiANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~ 467 (546)
||| ||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|++|+||+. +|. ..
T Consensus 303 APD-----IAGk~-iANP~A~IlS~amML~~~lg-------~~~~A~~Ie~AV~~vl~~G~~T~Dl~~--gG~-----~~ 362 (390)
T 3u1h_A 303 APD-----IAGKG-IANPLATILSAAMMLRYSFG-------LEEEAKAIEKAVEKVLAEGYRTADIAK--PGG-----KY 362 (390)
T ss_dssp CTT-----TTTSS-CSCTHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHTCCBTTTSC--SSC-----CC
T ss_pred hhh-----hcCCC-cCCcHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHcCCcChhhcc--CCC-----Cc
Confidence 999 99999 99999999999999999 88 688999999999999999999999941 142 26
Q ss_pred cCHHHHHHHHHHHHH
Q 009041 468 LNTEEFIDAVATNLG 482 (546)
Q Consensus 468 asT~ef~daV~~~L~ 482 (546)
++|+||+|+|+++|+
T Consensus 363 ~~T~e~~daV~~~l~ 377 (390)
T 3u1h_A 363 VSTTEMTDEVKAAVV 377 (390)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999999997
No 12
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=1.2e-102 Score=806.19 Aligned_cols=326 Identities=19% Similarity=0.238 Sum_probs=305.9
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccch
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~ 161 (546)
++|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|+|++++|+++|++||||++||.
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~---- 77 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESA---- 77 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTH----
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCC----
Confidence 57999999999999999999988654 7899999999999999999999999999999999999999999994
Q ss_pred hhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC-CCcEEEEeeccCCccccccceecCCCceeeeecCCCCC
Q 009041 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (546)
Q Consensus 162 ~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~-~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~ 240 (546)
|. +|++|||+||||||+|| ++.+||+.+++ ++|||||||||||+|+|.++...
T Consensus 78 --------~~-~~l~lR~~ldlyan~RP--~~~~pg~~~~~~~~D~vivREnteg~Y~g~~~~~~--------------- 131 (336)
T 1wpw_A 78 --------AD-VVVKLRQIYDMYANIRP--AKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVS--------------- 131 (336)
T ss_dssp --------HH-HHHHHHHTTTCCEEEEE--EECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEE---------------
T ss_pred --------cc-hHHHHHHHhCCEEEEEE--EeccCCCCCCCCCCcEEEEecCccCeEcCCccccC---------------
Confidence 33 89999999999999999 57899988777 49999999999999999876531
Q ss_pred CCcccccccccCCceEEE-EeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccC
Q 009041 241 GPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (546)
Q Consensus 241 ~~~~~~v~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~ 319 (546)
++++.. ++||++++|||+|+||+||++|++|||+|||+||||.|||||+++|+||| ++
T Consensus 132 ------------~~va~~~~~~T~~~~eRiar~AF~~A~~rrkkvt~v~KaNvlk~t~glf~~~~~eva-~~-------- 190 (336)
T 1wpw_A 132 ------------DGVAVGMKIITRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVL-KG-------- 190 (336)
T ss_dssp ------------TTEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCTTHHHHHHHHHHHHH-TT--------
T ss_pred ------------CCeEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECCcchhhhhHHHHHHHHHHH-Hh--------
Confidence 246654 79999999999999999999999999999999999999999999999999 44
Q ss_pred CeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhccc
Q 009041 320 SIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (546)
Q Consensus 320 dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IA 398 (546)
+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ .||||+|||||| ||
T Consensus 191 ~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEp~HGSApd-----ia 263 (336)
T 1wpw_A 191 KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDKK--ALFEPVHGAAFD-----IA 263 (336)
T ss_dssp TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECSSC--EEEEESSCCCTT-----TT
T ss_pred CceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhcCCccccceEEECCCC--ceEeCCCCCchh-----hC
Confidence 69999999999999999999999 99999999999999999999999999999999987 489999999999 99
Q ss_pred CCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcC-CCCcchhcccCCCCCCCccccCHHHHHHHH
Q 009041 399 GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREFYLNTEEFIDAV 477 (546)
Q Consensus 399 GK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLg~~~~G~~~~~~~~asT~ef~daV 477 (546)
||+ +|||+|+|||++|||+|+|.+|+|+++.++|++|++||.+++++| ++|+||| | .++|+||+|+|
T Consensus 264 Gk~-iANP~A~IlS~ammL~~lg~~d~~~~~~~~A~~Ie~Av~~~l~~g~~~T~Dlg----G-------~~~T~e~~dav 331 (336)
T 1wpw_A 264 GKN-IGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVG----G-------NATTDDLINEI 331 (336)
T ss_dssp TSS-CCCTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSSCCGGGT----C-------CCCHHHHHHHH
T ss_pred CCC-CcCcHHHHHHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHcCCccCCccC----C-------CCCHHHHHHHH
Confidence 999 999999999999999999999999999999999999999999999 6999998 8 68999999999
Q ss_pred HHHH
Q 009041 478 ATNL 481 (546)
Q Consensus 478 ~~~L 481 (546)
+++|
T Consensus 332 ~~~l 335 (336)
T 1wpw_A 332 YNKL 335 (336)
T ss_dssp HHSC
T ss_pred HHhh
Confidence 9876
No 13
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=2.1e-102 Score=811.20 Aligned_cols=332 Identities=20% Similarity=0.218 Sum_probs=304.5
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHh-cCeEEEecccCCCcc
Q 009041 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLK-YNVAIKCATITPDET 159 (546)
Q Consensus 85 ~~~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~-~daiLkGav~tP~~~ 159 (546)
.++|++||||||||||+++++++|.+. +++++|+++++|.++++++|+++|++++++|++ +|++||||++||.++
T Consensus 10 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg~P~~~ 89 (366)
T 3ty4_A 10 RIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHK 89 (366)
T ss_dssp EEEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECCCCSSC
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCccCCCCC
Confidence 478999999999999999999998653 589999999999999999999999999999999 599999999999865
Q ss_pred chhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCCCcEEEEeeccCCccccccceecCCCceeeeecCCCC
Q 009041 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (546)
Q Consensus 160 ~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G 239 (546)
. .+|+|+|++|||+||||||+|| ++.+||+.+ .++|||||||||||+|+|.++.... +
T Consensus 90 ~-------~~~~s~~l~LRk~ldlyaNvRP--~~~~~g~~~-~~vD~vivREnTeG~Y~g~e~~~~~------------~ 147 (366)
T 3ty4_A 90 V-------AGYSSPIVALRKKMGLYANVRP--VKSLDGAKG-KPVDLVIVRENTECLYVKEERMVQN------------T 147 (366)
T ss_dssp C-------TTCCCHHHHHHHHTTCCEEEEE--EECCTTCSS-SCCEEEEEEECSCBGGGCCEEEEEC------------C
T ss_pred C-------cccccchHHHHHHhCCeEEEEE--EeccCCCCC-CCCcEEEEeeCCCCEeecCcceecc------------C
Confidence 3 1478999999999999999999 578898731 2699999999999999999876421 0
Q ss_pred CCCcccccccccCCceEE-EEeecHHHHHHHHHHHHHHHHcC-------------CCCEEEEeCCCccccchhHHHHHHH
Q 009041 240 TGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSK-------------KWPLYLSTKNTILKKYDGRFKDIFQ 305 (546)
Q Consensus 240 ~~~~~~~v~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r-------------kkkVT~v~KaNVlk~tdGlFrei~~ 305 (546)
.+++++. .++||++++|||+|+||+||++| ++|||+|||+||||.+||||+++|+
T Consensus 148 -----------~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ 216 (366)
T 3ty4_A 148 -----------PGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCR 216 (366)
T ss_dssp -----------TTCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHH
T ss_pred -----------CCCceEEEEEEecHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHH
Confidence 0135665 48999999999999999999998 6899999999999999999999999
Q ss_pred HH---HHhhhccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCcee
Q 009041 306 QV---YEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLE 381 (546)
Q Consensus 306 eV---a~~eYP~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~ 381 (546)
|| + ++|| +|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++. +|
T Consensus 217 ev~~~a-~eyp------dV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~--a~ 287 (366)
T 3ty4_A 217 HAQSLD-PSYA------SINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDNF--VM 287 (366)
T ss_dssp HHGGGC-GGGT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCEEECSSC--EE
T ss_pred HHHHhH-hhCC------CceEEeeeHHHHHHHHHhCcccCcEEEECccchHHHHHHHHHhcCchhhhcceeeCCCc--eE
Confidence 99 6 8999 99999999999999999999999 99999999999999999999999999999999764 69
Q ss_pred ecccccccccchhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcC-CCCcchhcccCCC
Q 009041 382 AEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGP 460 (546)
Q Consensus 382 FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLg~~~~G~ 460 (546)
|||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++| ++|+||| |
T Consensus 288 fEpvHGSAPd-----IaGk~-iANP~A~IlS~amML~~lg-------~~~~A~~Ie~Av~~~l~~G~~~T~Dlg----g- 349 (366)
T 3ty4_A 288 SEPVHGSAPD-----IAGRG-IANPVATFRSVALMLEFMG-------HQDAAADIYTAVDKVLTEGKVLTPDLG----G- 349 (366)
T ss_dssp ECCSSCCCTT-----TTTSS-CCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHCSSCCGGGT----S-
T ss_pred EecCCCChhh-----cCCCC-ccCcHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcCCccCcccC----C-
Confidence 9999999999 99999 9999999999999999988 6889999999999999999 7999998 8
Q ss_pred CCCCccccCHHHHHHHHHHHHH
Q 009041 461 KVSREFYLNTEEFIDAVATNLG 482 (546)
Q Consensus 461 ~~~~~~~asT~ef~daV~~~L~ 482 (546)
.++|+||+|+|+++|+
T Consensus 350 ------~~~T~e~~daV~~~l~ 365 (366)
T 3ty4_A 350 ------KSGTNEITDAVLANIH 365 (366)
T ss_dssp ------CCCHHHHHHHHHHHC-
T ss_pred ------CcCHHHHHHHHHHHhh
Confidence 7999999999999874
No 14
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=6.6e-102 Score=807.97 Aligned_cols=340 Identities=19% Similarity=0.163 Sum_probs=305.9
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccch
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~ 161 (546)
++|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||++||.++++
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~~~ 84 (363)
T 1cnz_A 5 YHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENL 84 (363)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCccccC
Confidence 68999999999999999999988654 68999999999999999999999999999999999999999999987654
Q ss_pred hhccccccCCCchHHHHHhcCcEEEeeecccccCCCCC--CCC-------CCcEEEEeeccCCccccccceecCCCceee
Q 009041 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW-------KKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (546)
Q Consensus 162 ~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~--~~~-------~vDiVIvREntEG~Y~g~e~~~~~~g~~~~ 232 (546)
++ .+ ..++++|++|||+||||||+||+ +.+||+. +++ ++|||||||||||+|+|.++.... +
T Consensus 85 ~~-~~-~~e~~~~l~LR~~ldlyanvRP~--~~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~~~-~---- 155 (363)
T 1cnz_A 85 PP-ES-QPERGALLPLRKHFKLFSNLRPA--KLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREG-S---- 155 (363)
T ss_dssp CG-GG-STTHHHHHHHHHHHTCCEEEEEE--ECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEEC-C----
T ss_pred Cc-cc-CcccchHHHHHHHcCCEEEEEEE--EecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCcccc-C----
Confidence 32 11 13567899999999999999995 6788873 343 589999999999999998653211 0
Q ss_pred eecCCCCCCCcccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhh
Q 009041 233 VFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (546)
Q Consensus 233 ~~~~~~G~~~~~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~e 311 (546)
. +++++ ..++||++++|||+|+||+||++|++|||+|||+|||| +||||+++|+||| ++
T Consensus 156 -----~-------------~~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~e 215 (363)
T 1cnz_A 156 -----G-------------QYEKAFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQ-SSILWREIVNDVA-KT 215 (363)
T ss_dssp -----G-------------GGCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TT
T ss_pred -----C-------------CCceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHH-HH
Confidence 0 12344 45899999999999999999999999999999999999 9999999999999 89
Q ss_pred hccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccc
Q 009041 312 WRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVT 390 (546)
Q Consensus 312 YP~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAP 390 (546)
|| +|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .+||||+|||||
T Consensus 216 yp------dI~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAP 288 (363)
T 1cnz_A 216 YP------DVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG-FGLYEPAGGSAP 288 (363)
T ss_dssp CT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCCG
T ss_pred CC------CceEeeeeHHHHHHHHhhCcccceEEEECCcchHHHHHHHHHhcCCCcccccceeCCCC-CeEEEcCCCChh
Confidence 99 99999999999999999999999 99999999999999999999999999999999987 369999999999
Q ss_pred cchhhcccCCCCccCchhHHHHHHHHHHh-hhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcch-hcccCCCCCCCcccc
Q 009041 391 RHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDL-AILVHGPKVSREFYL 468 (546)
Q Consensus 391 d~~~~~IAGK~tiANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DL-g~~~~G~~~~~~~~a 468 (546)
| ||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|++|+|| | |. +.+
T Consensus 289 d-----iAGk~-iANP~A~IlS~ammL~~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~Dl~g----G~-----~~~ 346 (363)
T 1cnz_A 289 D-----IAGKN-IANPIAQILSLALLLRYSLD-------ANDAATAIEQAINRALEEGVRTGDLAR----GA-----AAV 346 (363)
T ss_dssp G-----GTTTT-CSCCHHHHHHHHHHHHHHSS-------CHHHHHHHHHHHHHHHHTTCCCGGGTT----TT-----TCC
T ss_pred h-----hcCCC-ccCcHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHhcCCcCcccCC----CC-----CCC
Confidence 9 99999 99999999999999999 88 6889999999999999999999999 5 52 138
Q ss_pred CHHHHHHHHHHHHHh
Q 009041 469 NTEEFIDAVATNLGA 483 (546)
Q Consensus 469 sT~ef~daV~~~L~~ 483 (546)
+|+||+|+|+++|++
T Consensus 347 ~T~e~~daV~~~l~~ 361 (363)
T 1cnz_A 347 STDEMGDIIARYVAE 361 (363)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999999964
No 15
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=1.5e-102 Score=808.59 Aligned_cols=330 Identities=17% Similarity=0.210 Sum_probs=304.2
Q ss_pred ceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccc
Q 009041 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (546)
Q Consensus 81 ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~ 160 (546)
|....++|++||||||||||+++++++|.+.+++|+|+++++|. ++|+++|+|++++|+++|++||||++||.. .
T Consensus 13 ~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~----~~g~~lp~~tl~~~~~~da~l~Gav~~P~~-~ 87 (349)
T 3blx_A 13 KYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQ----TDHKEGVYEAVESLKRNKIGLKGLWHTPAD-Q 87 (349)
T ss_dssp CCCCCEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSS----TTCHHHHHHHHHHHHHHSEEEEEECCSHHH-H
T ss_pred ccCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCc----ccCCcCcHHHHHHHHHCCEEEECCccCCCC-C
Confidence 55556899999999999999999999998888999999999997 799999999999999999999999999942 1
Q ss_pred hhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC-CCcEEEEeeccCCccccccceecCCCceeeeecCCCC
Q 009041 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (546)
Q Consensus 161 ~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~-~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G 239 (546)
++|+|+|++|||+||||||+|| ++++||+.+++ ++|||||||||||+|+|.++...
T Consensus 88 -------~~~~s~~l~lR~~ldlyan~RP--~~~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~~-------------- 144 (349)
T 3blx_A 88 -------TGHGSLNVALRKQLDIYANVAL--FKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESV-------------- 144 (349)
T ss_dssp -------HTCHHHHHHHHHTSCEEEEEEE--EECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECS--------------
T ss_pred -------CCccCchHHHHHHcCCEEEEEE--EeccCCCCCCCCCcCEEEEecCCCCcEeCCceecc--------------
Confidence 2478999999999999999999 57899988777 49999999999999999876531
Q ss_pred CCCcccccccccCCceEE-EEeecHHHHHHHHHHHHHHHHcC-CCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccc
Q 009041 240 TGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (546)
Q Consensus 240 ~~~~~~~v~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r-kkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~ 317 (546)
++++. .++||++++|||+|+||+||++| ++|||+|||+||||.+||||+++|+|||+++||
T Consensus 145 -------------~gva~~~~~~T~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp---- 207 (349)
T 3blx_A 145 -------------PGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYP---- 207 (349)
T ss_dssp -------------TTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCT----
T ss_pred -------------CCeEEEEEEeCHHHHHHHHHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCC----
Confidence 24554 58999999999999999999999 678999999999999999999999999967999
Q ss_pred cCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccc-cccccchhh
Q 009041 318 EHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH-GTVTRHFRL 395 (546)
Q Consensus 318 ~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~H-GSAPd~~~~ 395 (546)
+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ .||||+| |||||
T Consensus 208 --~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEpvH~GSAPd---- 279 (349)
T 3blx_A 208 --DIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDY--AVFEPGSRHVGLD---- 279 (349)
T ss_dssp --TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEESSC--EEECCTTTTSCC-----
T ss_pred --CeeEEEeeHHHHHHHHhhCcccccEEEECCcchHHHHHHHHhhcCCcccceEEEECCCc--eeEcCCCCCchhh----
Confidence 99999999999999999999999 99999999999999999999999999999999987 4999999 99999
Q ss_pred cccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcC-CCCcchhcccCCCCCCCccccCHHHHH
Q 009041 396 HQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKVSREFYLNTEEFI 474 (546)
Q Consensus 396 ~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLg~~~~G~~~~~~~~asT~ef~ 474 (546)
||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++| ++|+||| | +++|+||+
T Consensus 280 -iAGk~-iANP~A~IlS~ammL~~lg-------~~~~A~~Ie~Av~~~l~~G~~~T~Dlg----g-------~~~T~e~~ 339 (349)
T 3blx_A 280 -IKGQN-VANPTAMILSSTLMLNHLG-------LNEYATRISKAVHETIAEGKHTTRDIG----G-------SSSTTDFT 339 (349)
T ss_dssp --CCTT-CSCCHHHHHHHHHHHHHHT-------CCHHHHHHHHHHHHHHHSSSSCBGGGT----C-------CBCHHHHH
T ss_pred -hcCCC-CCCcHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHcCCccCCCcC----C-------CCCHHHHH
Confidence 99999 9999999999999999998 5689999999999999999 6999998 8 68999999
Q ss_pred HHHHHHHHh
Q 009041 475 DAVATNLGA 483 (546)
Q Consensus 475 daV~~~L~~ 483 (546)
|+|+++|++
T Consensus 340 daI~~~l~~ 348 (349)
T 3blx_A 340 NEIINKLST 348 (349)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcc
Confidence 999999953
No 16
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=6.7e-103 Score=812.39 Aligned_cols=329 Identities=22% Similarity=0.279 Sum_probs=305.1
Q ss_pred ceeecccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccc
Q 009041 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (546)
Q Consensus 81 ki~v~~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~ 160 (546)
|+...++|++||||||||||+++++++|.+.+++|+|+++++|.++ +++|+++|+|++++|+++|++||||++||.+.
T Consensus 17 ~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~-~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~- 94 (354)
T 3blx_B 17 PSTGKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIF-VNGLTTIPDPAVQSITKNLVALKGPLATPIGK- 94 (354)
T ss_dssp TTTSCEECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCCCEE-ETTEEECCHHHHHHHHHHSEEEECCCCCC----
T ss_pred hcCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEEechhh-hhhCCCCCHHHHHHHHHCCEEEECCccCCCCc-
Confidence 4444578999999999999999999999888899999999999999 99999999999999999999999999999753
Q ss_pred hhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC-CCcEEEEeeccCCccccccceecCCCceeeeecCCCC
Q 009041 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (546)
Q Consensus 161 ~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~-~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G 239 (546)
+|+|+|++|||+||||||+|| ++++||+.+++ ++|||||||||||+|+|.++...
T Consensus 95 --------~~~s~~l~lR~~ldlyan~RP--~~~~pg~~s~~~~vD~vivREnteg~Y~g~e~~~~-------------- 150 (354)
T 3blx_B 95 --------GHRSLNLTLRKTFGLFANVRP--AKSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVC-------------- 150 (354)
T ss_dssp ---------CCCHHHHHHHHHTEEEEEEE--EECCTTCCCSSCSCEEEEEEECSSEEEEEEEEECS--------------
T ss_pred --------cccCchHHHHHHcCCEEEEEE--ecccCCCCCCCCCccEEEEecCcCCcccCCccccc--------------
Confidence 388999999999999999999 57899988777 49999999999999999876531
Q ss_pred CCCcccccccccCCceEE-EEeecHHHHHHHHHHHHHHHHcC-CCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccc
Q 009041 240 TGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (546)
Q Consensus 240 ~~~~~~~v~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r-kkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~ 317 (546)
++++. .++||++++|||+|+||+||++| ++|||+|||+||||.+||||+++|+||| ++||
T Consensus 151 -------------~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva-~eyp---- 212 (354)
T 3blx_B 151 -------------PGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELS-KEYP---- 212 (354)
T ss_dssp -------------TTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHG-GGCT----
T ss_pred -------------CCEEEEEEEEcHHHHHHHHHHHHHHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHH-HHCC----
Confidence 24554 58999999999999999999999 6889999999999999999999999999 7999
Q ss_pred cCCeEEeeEehhHHHHHHhhCCCCe---eeeccCCcchhhhhhHhhh-cCCcccccccccCCCCCceeecccccccccch
Q 009041 318 EHSIWYEHRLIDDMVAYAIKSEGGY---VWACKNYDGDVQSDLLAQG-FGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHF 393 (546)
Q Consensus 318 ~~dI~~e~~lVDa~amqLVk~P~~F---VIVt~NlfGDILSDlaA~l-~GslGlapSanig~d~a~~~FEp~HGSAPd~~ 393 (546)
+|+++|+|||+|+||||++|++| ||||+|||||||||++|++ +|||||+||+|||+++ .||||+||||||
T Consensus 213 --dI~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~aa~l~~GslGl~pSanig~~~--a~fEp~HGSAPd-- 286 (354)
T 3blx_B 213 --DLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKI--SIFEAVHGSAPD-- 286 (354)
T ss_dssp --TSEEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGCEEEEEESSC--EEEEECSCCCGG--
T ss_pred --CceEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHHHHhhccCCccccceeEECCCc--eEEecCCCChhh--
Confidence 99999999999999999999999 9999999999999999999 9999999999999987 499999999999
Q ss_pred hhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcC--CCCcchhcccCCCCCCCccccCHH
Q 009041 394 RLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG--KMTKDLAILVHGPKVSREFYLNTE 471 (546)
Q Consensus 394 ~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G--~~T~DLg~~~~G~~~~~~~~asT~ 471 (546)
||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++| .+|+||| | .++|+
T Consensus 287 ---iAGk~-iANP~A~IlS~ammL~~lg-------~~~~A~~Ie~Av~~~l~~g~~~~T~Dlg----G-------~~~T~ 344 (354)
T 3blx_B 287 ---IAGQD-KANPTALLLSSVMMLNHMG-------LTNHADQIQNAVLSTIASGPENRTGDLA----G-------TATTS 344 (354)
T ss_dssp ---GTTTT-CCCTHHHHHHHHHHHHHHT-------CHHHHHHHHHTHHHHHTSSTTSSCGGGT----C-------CCCHH
T ss_pred ---hcCCC-ccCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCCccCCCcC----C-------CCCHH
Confidence 99999 9999999999999999998 6889999999999999999 7999998 8 68999
Q ss_pred HHHHHHHHHH
Q 009041 472 EFIDAVATNL 481 (546)
Q Consensus 472 ef~daV~~~L 481 (546)
||+|+|+++|
T Consensus 345 e~~dav~~~l 354 (354)
T 3blx_B 345 SFTEAVIKRL 354 (354)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhC
Confidence 9999999864
No 17
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=3.5e-102 Score=808.37 Aligned_cols=336 Identities=22% Similarity=0.199 Sum_probs=302.5
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccch
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~ 161 (546)
++|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.++.+
T Consensus 7 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 86 (361)
T 3udu_A 7 YKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNL 86 (361)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred eeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCCcCCC
Confidence 68999999999999999999988542 68999999999999999999999999999999999999999999976533
Q ss_pred hhccccccCCCchHHHHHhcCcEEEeeecccccCCCCC--C-------CCCCcEEEEeeccCCccccccceecCCCceee
Q 009041 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--P-------GWKKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (546)
Q Consensus 162 ~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~--~-------~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~ 232 (546)
+. + ...|+++|++|||+||||||+||+ +.+||+. + ..++|||||||||||+|+|.++...
T Consensus 87 ~~-~-~~~~~~~~l~LRk~ldLyaNvRP~--~~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~~~------- 155 (361)
T 3udu_A 87 PI-D-QRPERASLLPLRKHFNLFANLRPC--KIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGK------- 155 (361)
T ss_dssp CG-G-GSHHHHHHHHHHHHHTCCEEEEEE--ECCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEECS-------
T ss_pred CC-C-cCccccchHHHHHHcCCEEEEEEe--eccCCccccCCCccccccCCCcEEEEcccCCCeecCccCCcC-------
Confidence 21 0 011334589999999999999994 6677763 2 2369999999999999999765420
Q ss_pred eecCCCCCCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhh
Q 009041 233 VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (546)
Q Consensus 233 ~~~~~~G~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eY 312 (546)
+.+...++|||+++|||+|+||+||++|++|||+|||+|||+ +||||+++|+||| ++|
T Consensus 156 --------------------~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-t~glf~~~~~eva-~ey 213 (361)
T 3udu_A 156 --------------------ESAYDTEIYTKKEIERIARIAFESARIRKKKVHLIDKANVLA-SSILWREVVANVA-KDY 213 (361)
T ss_dssp --------------------SEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCH-HHHHHHHHHHHHG-GGC
T ss_pred --------------------ceEEEEEeccHHHHHHHHHHHHHHHHHcCCcEEEEECchhhc-cchHHHHHHHHHH-HHC
Confidence 123455899999999999999999999999999999999996 9999999999999 799
Q ss_pred ccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeeccccccccc
Q 009041 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391 (546)
Q Consensus 313 P~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd 391 (546)
| +|+++|+|||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|||+++ .+||||+||||||
T Consensus 214 p------dV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAPd 286 (361)
T 3udu_A 214 Q------DINLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKG-FGLYEPAGGSAPD 286 (361)
T ss_dssp T------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHCCGGGCEEEEECTTS-CEEEEESSCCCGG
T ss_pred C------CCeEEeeeHHHHHHHHHhCcccCcEEEecchhHHHHHHHHHHhcCchhhcceeeeCCCC-CeeeecCCCChhh
Confidence 9 99999999999999999999999 99999999999999999999999999999999876 3699999999999
Q ss_pred chhhcccCCCCccCchhHHHHHHHHHHh-hhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCH
Q 009041 392 HFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNT 470 (546)
Q Consensus 392 ~~~~~IAGK~tiANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT 470 (546)
||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|++|+||| |. +.++|
T Consensus 287 -----IAGk~-iANP~A~IlS~amML~~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~Dlg----G~-----~~~~T 344 (361)
T 3udu_A 287 -----IAHLN-IANPIAQILSAALMLKYSFK-------EEQAAQDIENAISLALAQGKMTKDLN----AK-----SYLNT 344 (361)
T ss_dssp -----GTTSS-CCCCHHHHHHHHHHHHHTSC-------CHHHHHHHHHHHHHHHHTTCCCTTTC----SS-----SCCCH
T ss_pred -----hcCCC-ccCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHcCCcCcCCC----CC-----CccCH
Confidence 99999 99999999999999999 88 68899999999999999999999998 63 26999
Q ss_pred HHHHHHHHHHHHh
Q 009041 471 EEFIDAVATNLGA 483 (546)
Q Consensus 471 ~ef~daV~~~L~~ 483 (546)
+||+|+|+++|++
T Consensus 345 ~e~~~aV~~~l~~ 357 (361)
T 3udu_A 345 DEMGDCILEILKE 357 (361)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999964
No 18
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=6.8e-102 Score=809.58 Aligned_cols=345 Identities=20% Similarity=0.196 Sum_probs=305.4
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhc----CCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccc
Q 009041 85 QNPIVEMDGDEMTRIIWQMIKDKLIF----PYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (546)
Q Consensus 85 ~~~I~vlpGDGIGpEI~~~~~~~l~~----~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~ 160 (546)
.++|++|||||||||||++++++|.+ .+++|+|+++++|.++++++|+++|+|++++|+++|++||||++||.+++
T Consensus 13 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~~~~ 92 (375)
T 3vmk_A 13 SYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPKWEH 92 (375)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTT
T ss_pred cceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCCccC
Confidence 37899999999999999999998854 26899999999999999999999999999999999999999999998654
Q ss_pred hhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCC---C------CCCCcEEEEeeccCCccccccceecCCCcee
Q 009041 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV---P------GWKKPICIGRHAFGDQYRATDTVIKGPGKLK 231 (546)
Q Consensus 161 ~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~---~------~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~ 231 (546)
++. ....|+++|++|||+||||||+||+ +.+|++. | .+++|||||||||||+|+|.++.....
T Consensus 93 ~~~--~~~~~~~~~l~LRk~ldLyaNvRP~--~~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~~~---- 164 (375)
T 3vmk_A 93 LPP--NDQPERGALLPLRGHFELFCNMRPA--KLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGE---- 164 (375)
T ss_dssp SCS--TTSHHHHHHHHHHHHTTCCEEEEEE--ECCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEECC----
T ss_pred CCc--cccccccchHHHHHHcCCeEEEEEE--eccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCccccccC----
Confidence 321 1123556799999999999999995 6677763 2 257999999999999999987654210
Q ss_pred eeecCCCCCCCcccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHh
Q 009041 232 MVFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE 310 (546)
Q Consensus 232 ~~~~~~~G~~~~~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~ 310 (546)
. +++++ ..++|||+++|||+|+||+||++|++|||+|||+|||| ++|||+++|+||| +
T Consensus 165 ------~-------------~~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-~~glf~~~~~eva-~ 223 (375)
T 3vmk_A 165 ------G-------------ENEEAFDTMRYSRKEIRRIAKIAFESAQGRRKKVTSVDKANVLA-CSVLWREVVEEVA-K 223 (375)
T ss_dssp ------G-------------GGCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-T
T ss_pred ------C-------------CCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECchhhh-hhhHHHHHHHHHH-H
Confidence 0 12454 45899999999999999999999999999999999998 7799999999999 7
Q ss_pred hhccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeeccccccc
Q 009041 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTV 389 (546)
Q Consensus 311 eYP~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSA 389 (546)
+|| +|+++|+|||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|||+++ .+||||+||||
T Consensus 224 eyp------dV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSA 296 (375)
T 3vmk_A 224 DYP------DVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQG-FGMYEPAGGSA 296 (375)
T ss_dssp TCT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCC
T ss_pred HCC------CceEeeeeHHHHHHHHHhCcccCcEEEECchhHHHHHHHHHHhcCCccccceeeeCCCC-ceEEecCCCCc
Confidence 999 99999999999999999999999 99999999999999999999999999999999886 36999999999
Q ss_pred ccchhhcccCCCCccCchhHHHHHHHHHHh-hhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCcccc
Q 009041 390 TRHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYL 468 (546)
Q Consensus 390 Pd~~~~~IAGK~tiANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~a 468 (546)
|| ||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|++|+||+....| .+.+
T Consensus 297 Pd-----IAGk~-iANP~A~IlS~amML~~~lg-------~~~~A~~Ie~AV~~~l~~G~~T~Dl~g~~~G-----~~~~ 358 (375)
T 3vmk_A 297 PD-----IAGQG-IANPVAQILSAALLLRHSLK-------LEDAALAIEAAVSKALSDGYLTCELLPASER-----SQAK 358 (375)
T ss_dssp TT-----TTTSS-CSCCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHTTCCCGGGSCGGGG-----GGCC
T ss_pred hh-----ccCCC-ccCcHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcCCCCchhccCCCC-----CCcc
Confidence 99 99999 99999999999999999 88 6889999999999999999999999410112 1268
Q ss_pred CHHHHHHHHHHHHHh
Q 009041 469 NTEEFIDAVATNLGA 483 (546)
Q Consensus 469 sT~ef~daV~~~L~~ 483 (546)
+|+||+|+|+++|+.
T Consensus 359 ~T~e~~~aV~~~l~~ 373 (375)
T 3vmk_A 359 STSQMGDYIAQAIAE 373 (375)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999953
No 19
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=3.8e-102 Score=820.41 Aligned_cols=363 Identities=21% Similarity=0.251 Sum_probs=306.2
Q ss_pred cceeecc--cEEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEE
Q 009041 80 DRVKVQN--PIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIK 150 (546)
Q Consensus 80 ~ki~v~~--~I~vlpGDGIGpEI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLk 150 (546)
.|++|++ +|++|||||||||||++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++||+||
T Consensus 17 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~Lk 96 (409)
T 2e0c_A 17 GKWIVPNKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLK 96 (409)
T ss_dssp SCEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEE
T ss_pred CeEecCCCceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEE
Confidence 4777764 6999999999999999999988543 389999999999999999999999999999999999999
Q ss_pred ecccCCCccchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC----CCcEEEEeeccCCccccccceecC
Q 009041 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKG 226 (546)
Q Consensus 151 Gav~tP~~~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~----~vDiVIvREntEG~Y~g~e~~~~~ 226 (546)
||++||.+. +|+|+|++|||+||||||+||| +.+||+.++. ++|||||||||||+|+|.++....
T Consensus 97 Gav~tP~~~---------~~~s~~l~LR~~LdlyanvRPv--~~~~g~~splk~~~~vDivIvREnteg~Y~g~e~~~~~ 165 (409)
T 2e0c_A 97 GPLETPIGK---------GWKSVNVAIRLMLDLYANIRPV--KYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNS 165 (409)
T ss_dssp CCCC-----------------CHHHHHHHHTTCCEEEEEE--ECCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTTS
T ss_pred CCccCCCcc---------cccChhHHHHHHcCCEEEEEEE--eccCCCCCCCCCccCCcEEEEEcCCCCEeCCcccccCC
Confidence 999999642 3889999999999999999995 5566654432 599999999999999999875322
Q ss_pred CCceeee-ecCCCCCCCcccccccccCCceEEE-EeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHH
Q 009041 227 PGKLKMV-FDPEDGTGPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDI 303 (546)
Q Consensus 227 ~g~~~~~-~~~~~G~~~~~~~v~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei 303 (546)
++..+++ |.++ +.. +.+. ++++.. ++||+++++||+|+||+||++|+ ++||+|||+||||.|||||+++
T Consensus 166 ~~~~~v~~f~~~------~~~-~~~~-~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~~ 237 (409)
T 2e0c_A 166 EEAKKIRDFLRK------ELK-VEIE-DDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREW 237 (409)
T ss_dssp HHHHHHHHHHHH------HSC-CCCC-SSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHH
T ss_pred Ccccchhhccch------hcc-ccCC-CceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHHH
Confidence 1111111 1110 000 1122 355554 78999999999999999999985 6799999999999999999999
Q ss_pred HHHHHHhhhcccc-----------ccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCccccccc
Q 009041 304 FQQVYEERWRQKF-----------EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSV 371 (546)
Q Consensus 304 ~~eVa~~eYP~~f-----------~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSa 371 (546)
|+|||+++||++| ++.+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+
T Consensus 238 ~~eva~~eypd~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSa 317 (409)
T 2e0c_A 238 AYEVALKEYRDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGA 317 (409)
T ss_dssp HHHHHHHHSTTTEEEHHHHTTTCCCTTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEE
T ss_pred HHHHHHHhCCCccccccccccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcccCceE
Confidence 9999954999654 23459999999999999999999999 99999999999999999999999999999
Q ss_pred ccCCCCCceeecccccccccchhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCc
Q 009041 372 LLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTK 451 (546)
Q Consensus 372 nig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~ 451 (546)
|+|+++ .||||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++|++|+
T Consensus 318 nig~~~--a~fEp~HGSAPd-----iAGk~-iANP~A~IlS~ammL~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~ 382 (409)
T 2e0c_A 318 NIGDEG--GMFEAIHGTAPK-----YAGKN-VANPTGIIKAGELMLRWMG-------WNEAADLIEKAINMAIRDKKVTQ 382 (409)
T ss_dssp EEETTE--EEEEESSCCCGG-----GTTTT-CSCTHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHTTCCCH
T ss_pred EECCCc--eEEecCCCChhh-----hcCCc-ccCcHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHcCCccc
Confidence 999765 599999999999 99999 9999999999999999999 68899999999999999999999
Q ss_pred chhcccCCCCCCCccccCHHHHHHHHHHHHH
Q 009041 452 DLAILVHGPKVSREFYLNTEEFIDAVATNLG 482 (546)
Q Consensus 452 DLg~~~~G~~~~~~~~asT~ef~daV~~~L~ 482 (546)
|||.+.+| +.++|+||+|+|+++|+
T Consensus 383 Dl~g~~g~------~~~~T~e~~daV~~~l~ 407 (409)
T 2e0c_A 383 DIARFMGV------KALGTKEYADELIKIMD 407 (409)
T ss_dssp HHHHHHTS------CCCCHHHHHHHHHHHHT
T ss_pred cccccCCC------CCcCHHHHHHHHHHHHh
Confidence 99732223 25899999999999995
No 20
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=7.7e-102 Score=821.46 Aligned_cols=359 Identities=20% Similarity=0.208 Sum_probs=305.9
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcCC--CCcHHHHHHHHhcCeEEEecccCC
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATITP 156 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~d~tg~--~lp~etleaik~~daiLkGav~tP 156 (546)
++|++|||||||||||++++++|.+. +++|+|+++++|.++++++|+ ++|++++++|+++|++||||++||
T Consensus 37 ~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l~G~~~tP 116 (427)
T 3dms_A 37 PIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLTTP 116 (427)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCCCC
T ss_pred CEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEEECCCCCC
Confidence 66999999999999999999988542 379999999999999999999 999999999999999999999999
Q ss_pred CccchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC----CCcEEEEeeccCCccccccceecCCCceee
Q 009041 157 DETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (546)
Q Consensus 157 ~~~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~----~vDiVIvREntEG~Y~g~e~~~~~~g~~~~ 232 (546)
.+. +|+|+|++|||+||||||+|| ++.+||+.++. ++|||||||||||+|+|.|++...++..++
T Consensus 117 ~~~---------~~~s~~l~LRk~LdLyaNlRP--v~~~pg~~splk~~~~vDivIvREnTeG~Y~G~e~~~~~~~~~~~ 185 (427)
T 3dms_A 117 VGG---------GIRSLNVALRQELDLYVCLRP--IQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKV 185 (427)
T ss_dssp C-------------CCHHHHHHHHTTCCEEEEE--ECCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTTCHHHHHH
T ss_pred CCc---------ccCChhHHHHHHhCCeEEEEE--eecCCCCCCCCCCCCCceEEEEEECCCCEecCcccccCCcccccc
Confidence 754 378999999999999999999 57788876553 699999999999999999876321100000
Q ss_pred e-e-cCCCCCCCcccccccccCCceEEE-EeecHHHHHHHHHHHHHHHHcC-CCCEEEEeCCCccccchhHHHHHHHHHH
Q 009041 233 V-F-DPEDGTGPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVY 308 (546)
Q Consensus 233 ~-~-~~~~G~~~~~~~v~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~r-kkkVT~v~KaNVlk~tdGlFrei~~eVa 308 (546)
. | ..+.|.. ...+ +++++.. ++||++++|||+|+||+||++| +++||+|||+||||.|||||+++|+|||
T Consensus 186 ~~~~~~~~g~~-----~~~~-~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglfr~~~~eva 259 (427)
T 3dms_A 186 IKFLQEEMGVK-----KIRF-PQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALA 259 (427)
T ss_dssp HHHHHHTSCCC-----CCSC-GGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHH
T ss_pred ccccccccccc-----cccc-CCcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHH
Confidence 0 0 0001110 0011 1344554 7899999999999999999998 5789999999999999999999999999
Q ss_pred Hhhhccc-------------cccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccC
Q 009041 309 EERWRQK-------------FEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLS 374 (546)
Q Consensus 309 ~~eYP~~-------------f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig 374 (546)
+++||+. ++.++|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||
T Consensus 260 ~~eypdv~~~~~~~~~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig 339 (427)
T 3dms_A 260 QKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLS 339 (427)
T ss_dssp HHHHCCEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEEEC
T ss_pred HHhCCccccccccccccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCccccceeeeC
Confidence 5589952 355679999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCCceeecccccccccchhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchh
Q 009041 375 SDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLA 454 (546)
Q Consensus 375 ~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg 454 (546)
+++ +||||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.++|++|++|+|||
T Consensus 340 ~~~--a~fEpvHGSAPd-----IAGk~-iANP~A~IlS~amML~~lg-------~~~~A~~Ie~AV~~vl~~G~~T~Dlg 404 (427)
T 3dms_A 340 DSV--AMFEATHGTAPK-----YAGKD-YVNPGSEILSAEMMLRHLG-------WTEAADVIISAMEKSIKQKRVTYDFA 404 (427)
T ss_dssp SSC--EEEEECSCCCGG-----GTTSS-CSCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTEECHHHH
T ss_pred CCc--ceEEeccCChhh-----hcCCC-cCCcHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHcCCcchhhc
Confidence 876 589999999999 99999 9999999999999999998 68899999999999999999999998
Q ss_pred cccCCCCCCCccccCHHHHHHHHHHHH
Q 009041 455 ILVHGPKVSREFYLNTEEFIDAVATNL 481 (546)
Q Consensus 455 ~~~~G~~~~~~~~asT~ef~daV~~~L 481 (546)
....| .+.++|+||+|+|+++|
T Consensus 405 g~~~g-----~~~~~T~e~~daV~~~l 426 (427)
T 3dms_A 405 RLMEG-----ATQVSCSGFGQVLIENM 426 (427)
T ss_dssp TTSSS-----CEECCHHHHHHHHHHTT
T ss_pred cccCC-----CCccCHHHHHHHHHHhh
Confidence 21112 23689999999999876
No 21
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=7.2e-102 Score=815.13 Aligned_cols=346 Identities=18% Similarity=0.188 Sum_probs=303.8
Q ss_pred eecccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCc
Q 009041 83 KVQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (546)
Q Consensus 83 ~v~~~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~ 158 (546)
++.++|++|||||||||||++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+
T Consensus 40 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~ 119 (405)
T 3r8w_A 40 KKRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKW 119 (405)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGG
T ss_pred CCCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCc
Confidence 35688999999999999999999988542 68999999999999999999999999999999999999999999986
Q ss_pred cchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCC--CC------CCCcEEEEeeccCCccccccceecCCCce
Q 009041 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PG------WKKPICIGRHAFGDQYRATDTVIKGPGKL 230 (546)
Q Consensus 159 ~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~--~~------~~vDiVIvREntEG~Y~g~e~~~~~~g~~ 230 (546)
+.++.. ..+.++|++||++||||||+||+ +.+||+. ++ .++|||||||||||+|+|.++.....+
T Consensus 120 ~~~~~~---~~p~~~ll~LRk~ldLyaNlRP~--k~~~gl~~~splk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~-- 192 (405)
T 3r8w_A 120 DNNEKH---LRPEKGLLQIRAALKVFANLRPA--TVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNE-- 192 (405)
T ss_dssp TTSCGG---GSHHHHHHHHHHHHTCCEEEEEE--ECCGGGGGGSSBCHHHHTTCEEEEEEECSCSTTTCSSCEEEECS--
T ss_pred cCCccc---cCcccchHHHHHHhCCeEEEEEe--eccCCccccCccccccCCCceEEEEeeCCCCeecCCccccccCC--
Confidence 543221 11234699999999999999995 6788762 22 369999999999999999987642100
Q ss_pred eeeecCCCCCCCcccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHH
Q 009041 231 KMVFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYE 309 (546)
Q Consensus 231 ~~~~~~~~G~~~~~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~ 309 (546)
. +++++ ..++||++++|||+|+||+||++|++|||+|||+|||+. +|||+++|+||+
T Consensus 193 -------~-------------~~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVlk~-sglf~~~~~eva- 250 (405)
T 3r8w_A 193 -------N-------------GEEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEA-SILWRKRVTALA- 250 (405)
T ss_dssp -------S-------------SCEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHH-HHHHHHHHHHHG-
T ss_pred -------C-------------CceEEEEEEEecHHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc-ccHHHHHHHHHH-
Confidence 0 12454 458999999999999999999999999999999999984 599999999998
Q ss_pred hhhccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccc
Q 009041 310 ERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGT 388 (546)
Q Consensus 310 ~eYP~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGS 388 (546)
++|| ||+++|+|||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|||+++ .+||||+|||
T Consensus 251 ~eYP------dV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGS 323 (405)
T 3r8w_A 251 SEYP------DVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSG-PGLFEPIHGS 323 (405)
T ss_dssp GGST------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCGGGCEEEEECSSS-CCEEEESSCC
T ss_pred hHCC------CCeEEeeeHHHHHHHHHhChhhCcEEeecchhhHHHHHHHHHhcCcccccceeeecCCC-CeEEecCCCC
Confidence 8999 99999999999999999999999 99999999999999999999999999999999876 3699999999
Q ss_pred cccchhhcccCCCCccCchhHHHHHHHHHHh-hhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcch--hcccCCCCCCCc
Q 009041 389 VTRHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDL--AILVHGPKVSRE 465 (546)
Q Consensus 389 APd~~~~~IAGK~tiANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DL--g~~~~G~~~~~~ 465 (546)
||| ||||| +|||+|+|||++|||+| +| +.++|++||+||.+++++|++|+|| | |.
T Consensus 324 APD-----IAGk~-iANP~A~IlS~amML~~slg-------~~~~A~~Ie~AV~~~l~~G~~T~Dl~~g----G~----- 381 (405)
T 3r8w_A 324 APD-----IAGQD-KANPLATILSAAMLLKYGLG-------EEKAAKRIEDAVLVALNNGFRTGDIYSA----GT----- 381 (405)
T ss_dssp CGG-----GTTTT-CCCCHHHHHHHHHHHHHTTC-------CTTHHHHHHHHHHHHHHTTEECGGGCCT----TS-----
T ss_pred hhh-----hCCCC-CCCcHHHHHHHHHHHHhhCc-------cHHHHHHHHHHHHHHHHcCCcCccccCC----CC-----
Confidence 999 99999 99999999999999999 88 5679999999999999999999999 6 62
Q ss_pred cccCHHHHHHHHHHHHHhhhc
Q 009041 466 FYLNTEEFIDAVATNLGAKLR 486 (546)
Q Consensus 466 ~~asT~ef~daV~~~L~~~~~ 486 (546)
+.++|+||+|+|+++|+++++
T Consensus 382 ~~~~T~e~~~aV~~~l~~~~~ 402 (405)
T 3r8w_A 382 KLVGCKEMGEEVLKSVDSQVP 402 (405)
T ss_dssp EECCHHHHHHHHHHHHC----
T ss_pred cccCHHHHHHHHHHHHHHHhc
Confidence 249999999999999987664
No 22
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=5.2e-102 Score=821.96 Aligned_cols=369 Identities=20% Similarity=0.236 Sum_probs=312.7
Q ss_pred cceeec--ccEEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEE
Q 009041 80 DRVKVQ--NPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIK 150 (546)
Q Consensus 80 ~ki~v~--~~I~vlpGDGIGpEI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLk 150 (546)
+|++|+ ++|++|||||||||||++++++|.+. +++|+|+++++|.++++++|+++|+|++++|+++||+||
T Consensus 12 ~~~~vp~~~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lk 91 (423)
T 1hqs_A 12 GVLNVPNNPIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIK 91 (423)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEE
T ss_pred CeEeCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEE
Confidence 466664 45999999999999999999988433 389999999999999999999999999999999999999
Q ss_pred ecccCCCccchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC----CCcEEEEeeccCCccccccceecC
Q 009041 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKG 226 (546)
Q Consensus 151 Gav~tP~~~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~----~vDiVIvREntEG~Y~g~e~~~~~ 226 (546)
||++||... +|+|+|++|||+||||||+||| +.+||+.+++ ++|||||||||||+|+|.++. .+
T Consensus 92 Gav~tP~~~---------~~~s~nl~LRk~LdlyanvRPv--~~~pg~~splk~~~~vDivIvREnteg~Y~G~e~~-~g 159 (423)
T 1hqs_A 92 GPLTTPVGG---------GIRSLNVALRQELDLFVCLRPV--RYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYA-KG 159 (423)
T ss_dssp CCCCCCSSS---------SSCCHHHHHHHHTTCCEEEEEE--ECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEEC-TT
T ss_pred CCccCCCCc---------CcCChhHHHHHHcCCEEEEEEE--eccCCCCCCCCCCCCCcEEEEecCCCCeecccccc-cC
Confidence 999999642 4899999999999999999995 6788876654 599999999999999999875 23
Q ss_pred CCceeeeecCCCCCCCcccccccccCCceEE-EEeecHHHHHHHHHHHHHHHHcC-CCCEEEEeCCCccccchhHHHHHH
Q 009041 227 PGKLKMVFDPEDGTGPVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIF 304 (546)
Q Consensus 227 ~g~~~~~~~~~~G~~~~~~~v~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r-kkkVT~v~KaNVlk~tdGlFrei~ 304 (546)
+++.+.++.+. + +...++.++|+ ++++. .++||+++++||+|+||+||++| +++||+|||+||||.|||+|+++|
T Consensus 160 ~~~~~~v~~~~-~-~~~~~~~~~~~-~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~ 236 (423)
T 1hqs_A 160 SEEVQKLISFL-Q-NELNVNKIRFP-ETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWG 236 (423)
T ss_dssp CHHHHHHHHHH-H-HHSCCCCCSCG-GGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHH
T ss_pred Cccccceeccc-c-ccccccccccC-CceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHH
Confidence 33221111100 0 00111222233 35655 48999999999999999999998 688999999999999999999999
Q ss_pred HHHHHhhhcccc--------------------------ccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhh
Q 009041 305 QQVYEERWRQKF--------------------------EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDL 357 (546)
Q Consensus 305 ~eVa~~eYP~~f--------------------------~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDl 357 (546)
+|||+++||+.. ++.+|+++|+|||+|+||||++|++| ||||+|||||||||+
T Consensus 237 ~eva~~eypd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~ 316 (423)
T 1hqs_A 237 YELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDA 316 (423)
T ss_dssp HHHHHHHHGGGEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHH
T ss_pred HHHHHHhCCCcccchhhhccccccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcchHHHHHH
Confidence 999955999631 34459999999999999999999999 999999999999999
Q ss_pred HhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHH
Q 009041 358 LAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLE 437 (546)
Q Consensus 358 aA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie 437 (546)
+|+++|||||+||+|||++...+||||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|+
T Consensus 317 aA~l~GslGl~pSanigp~~~~alfEp~HGSAPd-----iAGk~-iANP~A~IlS~amML~hlg-------~~~~A~~Ie 383 (423)
T 1hqs_A 317 LAAQVGGIGIAPGANINYETGHAIFEATHGTAPK-----YAGLD-KVNPSSVILSGVLLLEHLG-------WNEAADLVI 383 (423)
T ss_dssp HHHHTTCTTTCEEEEECTTTCCEEEEESCCCCGG-----GTTTT-CSCCHHHHHHHHHHHHHHT-------CHHHHHHHH
T ss_pred HHhhcCCcccCccceecCCCCceEEecCCCChhh-----hCCCC-CcCcHHHHHHHHHHHHHcC-------CHHHHHHHH
Confidence 9999999999999999952223699999999999 99999 9999999999999999999 688999999
Q ss_pred HHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHHHHH
Q 009041 438 AACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNL 481 (546)
Q Consensus 438 ~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~~~L 481 (546)
+||.+++++|++|+|||.+.+| .+.++|+||+|+|+++|
T Consensus 384 ~Av~~~l~~g~~T~Dl~g~~~g-----~~~~~T~e~~daV~~~l 422 (423)
T 1hqs_A 384 KSMEKTIASKVVTYDFARLMDG-----ATEVKCSEFGEELIKNM 422 (423)
T ss_dssp HHHHHHHHTTEECHHHHTTSSS-----CEECCHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCcccccccccCC-----CCCcCHHHHHHHHHHhh
Confidence 9999999999999999822112 12589999999999876
No 23
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=2.5e-101 Score=803.18 Aligned_cols=336 Identities=18% Similarity=0.162 Sum_probs=301.2
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccch
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~ 161 (546)
-+|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||++||.++++
T Consensus 13 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 92 (366)
T 1vlc_A 13 MKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWDDL 92 (366)
T ss_dssp EEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTTS
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCccccC
Confidence 36999999999999999999998655 79999999999999999999999999999999999999999999976543
Q ss_pred hhccccccCCCchHHHHHhcCcEEEeeecccccCCCCC--CCC-------CCcEEEEeeccCCccccccceecCCCceee
Q 009041 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW-------KKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (546)
Q Consensus 162 ~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~--~~~-------~vDiVIvREntEG~Y~g~e~~~~~~g~~~~ 232 (546)
+ ..+.+ ..++|++|||+||||||+||+ +.+|++. +++ ++|||||||||||+|+|.++...
T Consensus 93 ~-~~~r~-~~~~~l~LRk~ldlyaN~RP~--~~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~~~~------- 161 (366)
T 1vlc_A 93 P-PEKRP-EIGGLLALRKMLNLYANIRPI--KVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLD------- 161 (366)
T ss_dssp C-STTSH-HHHTHHHHHHHTTCCEEEEEE--ECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEEC-------
T ss_pred C-cccCc-ccchhHHHHHHhCCEEEEEEc--cccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCccccC-------
Confidence 2 11111 122499999999999999995 6688875 343 49999999999999999876531
Q ss_pred eecCCCCCCCcccccccccCCce-EEEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhh
Q 009041 233 VFDPEDGTGPVELDVYNFKGPGI-ALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (546)
Q Consensus 233 ~~~~~~G~~~~~~~v~~~~~~~v-a~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~e 311 (546)
+++ ...++||++++|||+|+||+||++|++|||+|||+|||| +||||+++|+||| ++
T Consensus 162 --------------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-t~glf~~~~~eva-~e 219 (366)
T 1vlc_A 162 --------------------EEKGFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLY-SSMLWRKVVNEVA-RE 219 (366)
T ss_dssp --------------------SSCEEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TT
T ss_pred --------------------CCeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-cchHHHHHHHHHH-HH
Confidence 133 455889999999999999999999999999999999999 9999999999999 79
Q ss_pred hccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccc
Q 009041 312 WRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVT 390 (546)
Q Consensus 312 YP~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAP 390 (546)
|| +|+++|+|||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+| +. +||||+|||||
T Consensus 220 yp------dV~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig-~~--alfEpvHGSAP 290 (366)
T 1vlc_A 220 YP------DVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFG-DK--NLYEPAGGSAP 290 (366)
T ss_dssp CT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEES-SS--EEEEESSCCCT
T ss_pred CC------CceEEeeeHHHHHHHHhhCcccceEEEEcchhHHHHHHHHHHhcCccccccEeeeC-Cc--eeeecCCCchh
Confidence 99 99999999999999999999999 99999999999999999999999999999999 54 69999999999
Q ss_pred cchhhcccCCCCccCchhHHHHHHHHHHh-hhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccC
Q 009041 391 RHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLN 469 (546)
Q Consensus 391 d~~~~~IAGK~tiANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~as 469 (546)
| ||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|++|+|||. +|. +.++
T Consensus 291 d-----IAGk~-iANP~A~IlS~ammL~~slg-------~~~~A~~Ie~Av~~~l~~g~~T~Dlg~--~gg-----~~~~ 350 (366)
T 1vlc_A 291 D-----IAGKN-IANPIAQILSLAMMLEHSFG-------MVEEARKIERAVELVIEEGYRTRDIAE--DPE-----KAVS 350 (366)
T ss_dssp T-----TTTTT-CSCCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHTTCCCGGGCS--SGG-----GCCC
T ss_pred h-----cCCCC-ccCcHHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHcCCccccccc--CCC-----CCcC
Confidence 9 99999 99999999999999999 98 688999999999999999999999962 121 1389
Q ss_pred HHHHHHHHHHHHHh
Q 009041 470 TEEFIDAVATNLGA 483 (546)
Q Consensus 470 T~ef~daV~~~L~~ 483 (546)
|+||+|+|+++|++
T Consensus 351 T~e~~daV~~~l~~ 364 (366)
T 1vlc_A 351 TSQMGDLICKKLEE 364 (366)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999964
No 24
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=2.6e-101 Score=802.54 Aligned_cols=341 Identities=22% Similarity=0.243 Sum_probs=301.5
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccch
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~ 161 (546)
++|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.++++
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 58999999999999999999988653 68999999999999999999999999999999999999999999986544
Q ss_pred hhccccccCCCchHHHHHhcCcEEEeeecccccCCCCC--CC------CCCcEEEEeeccCCccccccceecCCCceeee
Q 009041 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PG------WKKPICIGRHAFGDQYRATDTVIKGPGKLKMV 233 (546)
Q Consensus 162 ~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~--~~------~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~ 233 (546)
+. .+.+ +++ |++|||+||||||+||| +.+||+. ++ .++|||||||||||+|+|.++....
T Consensus 82 ~~-~~~~-e~~-ll~lRk~ldlyanvRP~--~~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~~~------- 149 (358)
T 1a05_A 82 PP-AKRP-EQG-LLRLRKGLDLYANLRPA--QIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEV------- 149 (358)
T ss_dssp CG-GGSH-HHH-HHHHHHHHTCCEEEEEE--ECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEE-------
T ss_pred Cc-cccc-hhh-HHHHHHHcCCEEEEEEE--EecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCcccc-------
Confidence 31 1111 234 89999999999999995 6688873 22 2589999999999999998643210
Q ss_pred ecCCCCCCCcccccccccCCceE-EEEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhh
Q 009041 234 FDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (546)
Q Consensus 234 ~~~~~G~~~~~~~v~~~~~~~va-~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eY 312 (546)
.+ +++++ ..++||++++|||+|+||+||++|++|||+|||+|||| ++|||+++|+||| ++|
T Consensus 150 ---~~-------------~~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~ey 211 (358)
T 1a05_A 150 ---ID-------------GKRRGFNTMVYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLE-TTRLWREVVTEVA-RDY 211 (358)
T ss_dssp ---ET-------------TEEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHG-GGC
T ss_pred ---CC-------------CCceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHH-HHC
Confidence 00 12344 45899999999999999999999999999999999999 9999999999999 899
Q ss_pred ccccccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeeccccccccc
Q 009041 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391 (546)
Q Consensus 313 P~~f~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd 391 (546)
| +|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+| ++ .+||||+||||||
T Consensus 212 p------dI~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig-~~-~~~fEpvHGSAPd 283 (358)
T 1a05_A 212 P------DVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG-EG-RAMYEPIHGSAPD 283 (358)
T ss_dssp T------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEC-SS-CEEEEESSCCCGG
T ss_pred C------CceEEeeeHHHHHHHHHhCCCcccEEEecCcccHhHHHHHHhhcCCccccceeeeC-CC-ceeeecCCCChhH
Confidence 9 99999999999999999999999 99999999999999999999999999999999 54 3699999999999
Q ss_pred chhhcccCCCCccCchhHHHHHHHHHHh-hhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCH
Q 009041 392 HFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNT 470 (546)
Q Consensus 392 ~~~~~IAGK~tiANPiA~IlS~ammL~h-lg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT 470 (546)
||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|++|+||+. .+| +.++|
T Consensus 284 -----iAGk~-iANP~A~IlS~ammL~~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~Dl~g-~g~------~~~~T 343 (358)
T 1a05_A 284 -----IAGQD-KANPLATILSVAMMLRHSLN-------AEPWAQRVEAAVQRVLDQGLRTADIAA-PGT------PVIGT 343 (358)
T ss_dssp -----GTTTT-CSCCHHHHHHHHHHHHHTSS-------CHHHHHHHHHHHHHHHHTTCCCGGGCC-TTS------CCCCH
T ss_pred -----hcCCC-ccCcHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCcCccccc-CCC------CCcCH
Confidence 99999 99999999999999999 88 688999999999999999999999961 012 13899
Q ss_pred HHHHHHHHHHHHhh
Q 009041 471 EEFIDAVATNLGAK 484 (546)
Q Consensus 471 ~ef~daV~~~L~~~ 484 (546)
+||+|+|+++|+++
T Consensus 344 ~e~~daV~~~l~~~ 357 (358)
T 1a05_A 344 KAMGAAVVNALNLK 357 (358)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999999654
No 25
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=6.7e-101 Score=793.64 Aligned_cols=329 Identities=19% Similarity=0.181 Sum_probs=298.8
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCccchhhcc
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~~~~~e~~ 165 (546)
++|++||||||||||+++++++|.+...+|+|+++++|.++++++|+++|++++++|+++|++||||++||+.+. .
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~~--~-- 77 (337)
T 1w0d_A 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPS--G-- 77 (337)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCT--T--
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCCC--c--
Confidence 589999999999999999999986544469999999999999999999999999999999999999999995321 0
Q ss_pred ccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCCC----CcEEEEeeccCCccccccceecCCCceeeeecCCCCCC
Q 009041 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK----KPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTG 241 (546)
Q Consensus 166 l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~~----vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~~G~~ 241 (546)
.+|+|+|++|||+||||||+||+ +.+|++.++++ +|||||||||||+|+|.++... +| .
T Consensus 78 --~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~s~l~~~~~~DivivREnteg~Y~g~e~~~~-~g-----------~- 140 (337)
T 1w0d_A 78 --VLERGLLLRLRFELDHHINLRPA--RLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIR-VG-----------T- 140 (337)
T ss_dssp --HHHHHTHHHHHHHTTCCEEEEEE--ECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEES-TT-----------S-
T ss_pred --ccccchHHHHHHHcCCEEEEEEe--ecCCCCCCcccCCCCCcEEEEecCCCCeecCCcceec-CC-----------C-
Confidence 12678999999999999999995 67898877663 8999999999999999987642 11 1
Q ss_pred CcccccccccCCceEE-EEeecHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccchhHHHHHHHHHHHhhhccccccCC
Q 009041 242 PVELDVYNFKGPGIAL-AMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (546)
Q Consensus 242 ~~~~~v~~~~~~~va~-~~~~Tr~~ieRiar~AFe~A~~rkkkVT~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~d 320 (546)
+++++. .++||++++|||+|+||+||++|++|||+|||+||||.|||||+++|+||| ++|| +
T Consensus 141 ----------~~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~s~glf~~~~~eva-~eyp------~ 203 (337)
T 1w0d_A 141 ----------PNEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVG-ECYP------D 203 (337)
T ss_dssp ----------TTCEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHH-TTCT------T
T ss_pred ----------CCCeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCccchhhhHHHHHHHHHHH-HHCC------c
Confidence 134554 589999999999999999999999999999999999999999999999999 7999 9
Q ss_pred eEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCC-ceeecccccccccchhhccc
Q 009041 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQK 398 (546)
Q Consensus 321 I~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a-~~~FEp~HGSAPd~~~~~IA 398 (546)
|+++|+|||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++. .+||||+|||||| ||
T Consensus 204 i~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~~~~a~fEp~HGSAPd-----iA 278 (337)
T 1w0d_A 204 VEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPD-----IA 278 (337)
T ss_dssp SEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGG-----GT
T ss_pred eEEEEEEHHHHHHHHhhCcccccEEEECcchhHHHHHHHhhhcCCcccCceeEeCCCCCCceEEecCCCChhh-----hC
Confidence 9999999999999999999999 999999999999999999999999999999999762 4799999999999 99
Q ss_pred CCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHH
Q 009041 399 GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVA 478 (546)
Q Consensus 399 GK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~ 478 (546)
||| +|||+|+|||++|||+|+| +.++|++|++||.+++++| | |. +++|+||+|+|+
T Consensus 279 Gk~-iANP~A~IlS~ammL~~lg-------~~~~A~~Ie~Av~~~l~~g------g----g~------~~~T~e~~~av~ 334 (337)
T 1w0d_A 279 GQG-IADPTAAIMSVALLLSHLG-------EHDAAARVDRAVEAHLATR------G----SE------RLATSDVGERIA 334 (337)
T ss_dssp TSS-CSCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHC------T----TC------CCCHHHHHHHHH
T ss_pred CCC-CcCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcC------C----CC------CcCHHHHHHHHH
Confidence 999 9999999999999999998 6889999999999999998 5 62 479999999999
Q ss_pred HHH
Q 009041 479 TNL 481 (546)
Q Consensus 479 ~~L 481 (546)
++|
T Consensus 335 ~~l 337 (337)
T 1w0d_A 335 AAL 337 (337)
T ss_dssp HTC
T ss_pred hhC
Confidence 864
No 26
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=8.7e-101 Score=810.30 Aligned_cols=363 Identities=21% Similarity=0.215 Sum_probs=311.7
Q ss_pred cceeec--ccEEEEcCCccHHHHHHHHHHHHhcC----CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecc
Q 009041 80 DRVKVQ--NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCAT 153 (546)
Q Consensus 80 ~ki~v~--~~I~vlpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav 153 (546)
+|++|+ ++|++|||||||||||++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++||+||||+
T Consensus 20 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav 99 (412)
T 2iv0_A 20 GKLIVPDNPIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPL 99 (412)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCC
T ss_pred CeEeCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCc
Confidence 477776 34999999999999999999998654 789999999999999999999999999999999999999999
Q ss_pred cCCCccchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC----CCcEEEEeeccCCccccccceecCCCc
Q 009041 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGK 229 (546)
Q Consensus 154 ~tP~~~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~----~vDiVIvREntEG~Y~g~e~~~~~~g~ 229 (546)
+||.+. +|+|+|++|||+||||||+||| +.+||+.++. ++|||||||||||+|+|.++....++.
T Consensus 100 ~tP~~~---------~~~s~~l~LR~~Ldlyan~RPv--~~~~g~~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~ 168 (412)
T 2iv0_A 100 TTPVGG---------GYRSLNVTIRQVLDLYANVRPV--YYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEA 168 (412)
T ss_dssp CCCSSS---------SSSHHHHHHHHHTTCCEEEEEE--ECCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHH
T ss_pred cCCCCc---------cccChhHHHHHHcCCeEEEEEE--EecCCCCCCCCCcCCCCEEEEecCCCCEeCCcccccCCccc
Confidence 999643 3899999999999999999995 5566665443 499999999999999999875321111
Q ss_pred eeee-ecCCCCCCCcccccccccCCceEEE-EeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHHHHHHH
Q 009041 230 LKMV-FDPEDGTGPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQ 306 (546)
Q Consensus 230 ~~~~-~~~~~G~~~~~~~v~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFrei~~e 306 (546)
.+++ |.++. .. ++|. ++++.. ++||+++++||+|+||+||++|+ ++||+|||+||||.|||||+++|+|
T Consensus 169 ~~v~~~~~~~------~~-~~~~-~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~e 240 (412)
T 2iv0_A 169 LKLIRFLKNE------FG-VTIR-EDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYE 240 (412)
T ss_dssp HHHHHHHHHH------HC-CCCC-TTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHH
T ss_pred cchhhccccc------cc-ccCC-CceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHH
Confidence 1110 11000 00 1112 345554 78999999999999999999985 6799999999999999999999999
Q ss_pred HHHhhhcccc--------------ccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCccccccc
Q 009041 307 VYEERWRQKF--------------EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSV 371 (546)
Q Consensus 307 Va~~eYP~~f--------------~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSa 371 (546)
||+++||++| ++.+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+
T Consensus 241 va~~eypd~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapsa 320 (412)
T 2iv0_A 241 VAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGS 320 (412)
T ss_dssp HHHHHSTTTEECHHHHHHHHTTCCCTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEE
T ss_pred HHHHhCCCccccccchhhhccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCccccceE
Confidence 9954999654 23459999999999999999999999 99999999999999999999999999999
Q ss_pred ccCCCCCceeecccccccccchhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCc
Q 009041 372 LLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTK 451 (546)
Q Consensus 372 nig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~ 451 (546)
|+|++. .||||+|||||| ||||| +|||+|+|||++|||+|+| +.++|++|++||.+++++|++|+
T Consensus 321 nig~~~--a~fEp~HGSAPd-----iAGk~-iANP~A~IlS~amML~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~ 385 (412)
T 2iv0_A 321 NIGDGI--GVFEPVHGSAPK-----YAGQN-KVNPTAEILTGALMFEYIG-------WKDASEMIKKAVEMTISSGIVTY 385 (412)
T ss_dssp EEETTE--EEEEESSCCCST-----TTTSS-CSCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHTTEECH
T ss_pred EECCCc--eEEeCCCCChhh-----cCCCc-ccCcHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHcCCccc
Confidence 999754 599999999999 99999 9999999999999999999 68899999999999999999999
Q ss_pred chhcccCCCCCCCccccCHHHHHHHHHHHHH
Q 009041 452 DLAILVHGPKVSREFYLNTEEFIDAVATNLG 482 (546)
Q Consensus 452 DLg~~~~G~~~~~~~~asT~ef~daV~~~L~ 482 (546)
|||...+| +.++|+||+|+|+++|+
T Consensus 386 Dl~~~~G~------~~~~T~e~~daV~~~l~ 410 (412)
T 2iv0_A 386 DIHRHMGG------TKVGTREFAEAVVENLQ 410 (412)
T ss_dssp HHHHHHCS------EECCHHHHHHHHHHHHH
T ss_pred ccccccCC------CCcCHHHHHHHHHHHHh
Confidence 99632213 25899999999999996
No 27
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=4e-101 Score=815.97 Aligned_cols=366 Identities=23% Similarity=0.216 Sum_probs=310.7
Q ss_pred cceeec--ccEEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcCC--CCcHHHHHHHHhcCeE
Q 009041 80 DRVKVQ--NPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVA 148 (546)
Q Consensus 80 ~ki~v~--~~I~vlpGDGIGpEI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~d~tg~--~lp~etleaik~~dai 148 (546)
+|++|+ ++|++|||||||||||++++++|.+. +++|+|+++++|.++++++|+ ++|++++++|+++||+
T Consensus 19 ~~~~vp~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~ 98 (429)
T 2d4v_A 19 GVLQVPDQPIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVA 98 (429)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEE
T ss_pred CeEEcCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEE
Confidence 356664 44999999999999999999988543 389999999999999999999 9999999999999999
Q ss_pred EEecccCCCccchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCCCC----CCcEEEEeeccCCcccccccee
Q 009041 149 IKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVI 224 (546)
Q Consensus 149 LkGav~tP~~~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~~~----~vDiVIvREntEG~Y~g~e~~~ 224 (546)
||||++||.+. +|+|+|++|||+||||||+||| +.+||+.++. ++|||||||||||+|+|.++..
T Consensus 99 lkGav~tP~~~---------~~~s~~l~LRk~LdLyanvRPv--~~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~ 167 (429)
T 2d4v_A 99 IKGPLETPVGG---------GIRSLNVAMRQDLDLYVCLRPV--RYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPA 167 (429)
T ss_dssp EECCCCCCSSS---------SSCCHHHHHHHHTTCCEEEEEE--ECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECT
T ss_pred EECCccCCCcc---------cccChhHHHHHHcCCEEEEEEE--EecCCCCCCCCCcCCCCEEEEEeCCCCeecCccccc
Confidence 99999999643 4899999999999999999995 5567665442 5999999999999999998753
Q ss_pred cCCCceeee-ecCCCCCCCcccccccccCCceEEE-EeecHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccchhHHH
Q 009041 225 KGPGKLKMV-FDPEDGTGPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFK 301 (546)
Q Consensus 225 ~~~g~~~~~-~~~~~G~~~~~~~v~~~~~~~va~~-~~~Tr~~ieRiar~AFe~A~~rk-kkVT~v~KaNVlk~tdGlFr 301 (546)
..++..+++ |.++..+ ++.++|. ++++.. .+||++++|||+|+||+||++|+ ++||+|||+||||.|||||+
T Consensus 168 ~~~~~~~v~~~~~~~~~----~~~~~~~-~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~ 242 (429)
T 2d4v_A 168 GSPEAEKIIRFLREEMG----VTKIRFP-DSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFR 242 (429)
T ss_dssp TCHHHHHHHHHHHHTSC----CCCCSCG-GGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHH
T ss_pred CCcccccceeccccccc----cccccCC-CceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHH
Confidence 222211111 2211110 1222333 345554 78999999999999999999985 67999999999999999999
Q ss_pred HHHHHHHHhhhccccc--------------------------cCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhh
Q 009041 302 DIFQQVYEERWRQKFE--------------------------EHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQ 354 (546)
Q Consensus 302 ei~~eVa~~eYP~~f~--------------------------~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDIL 354 (546)
++|+|||+++||+.+. +.+|+++|+|||+|+||||++|++| ||||+|||||||
T Consensus 243 ~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~NlfGDIL 322 (429)
T 2d4v_A 243 DWGYALAEREFAGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYV 322 (429)
T ss_dssp HHHHHHHHHHSTTTEEEHHHHHHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHH
T ss_pred HHHHHHHHHhCCCccccccccccccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCcccHHH
Confidence 9999999559996441 2349999999999999999999999 999999999999
Q ss_pred hhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHH
Q 009041 355 SDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQ 434 (546)
Q Consensus 355 SDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~ 434 (546)
||++|+++|||||+||+|||+++ .||||+|||||| ||||| +|||+|+|||++|||+|+| +.++|+
T Consensus 323 SD~aA~l~GslGl~pSanig~~~--a~fEpvHGSAPd-----iAGk~-iANP~A~IlS~amML~hlg-------~~~~A~ 387 (429)
T 2d4v_A 323 SDALAAEVGGIGMAPGANLSDTH--AIFEATHGTAPD-----IAGQG-KANPSSLILSAVMMLEHLG-------WGEAAQ 387 (429)
T ss_dssp HHHHHHHTTCGGGCCCEEECSSC--EEEECSCCCCTT-----TTTTT-CCCCHHHHHHHHHHHHHTT-------CHHHHH
T ss_pred HHHHHHhcCCHhhcCeeEECCCc--eEEecCCCChhH-----hcCCC-CcCcHHHHHHHHHHHHHcC-------CHHHHH
Confidence 99999999999999999999765 599999999999 99999 9999999999999999999 688999
Q ss_pred HHHHHHHHHHHcCCCCcchhcccCCCCCCCccccCHHHHHHHHHHHH
Q 009041 435 KLEAACIEAVETGKMTKDLAILVHGPKVSREFYLNTEEFIDAVATNL 481 (546)
Q Consensus 435 ~Ie~AV~~vl~~G~~T~DLg~~~~G~~~~~~~~asT~ef~daV~~~L 481 (546)
+|++||.++|++|++|+|||.+.+|. +.++|+||+|+|+++|
T Consensus 388 ~Ie~Av~~~l~~g~~T~Dlg~~~~g~-----~~~~T~e~~daV~~~l 429 (429)
T 2d4v_A 388 AIVAAMNATIAAGEVTGDLAALRGDV-----PALSTTEFTAALIRRF 429 (429)
T ss_dssp HHHHHHHHHHHTTCEEHHHHTTCTTC-----CEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCccccccccCCCC-----CCcCHHHHHHHHHhhC
Confidence 99999999999999999998322231 2479999999999764
No 28
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=1.6e-100 Score=812.46 Aligned_cols=354 Identities=21% Similarity=0.202 Sum_probs=306.6
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC-------CCceeEEEEecchhhhhhcCCCCcHHHHHHHHhcCeEEEecccCCCc
Q 009041 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (546)
Q Consensus 86 ~~I~vlpGDGIGpEI~~~~~~~l~~~-------~~~i~~~~~dlG~~~~d~tg~~lp~etleaik~~daiLkGav~tP~~ 158 (546)
++|++|||||||||||++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++||+||||++||.+
T Consensus 36 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~ 115 (435)
T 1tyo_A 36 PVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETPVG 115 (435)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCCTT
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEECCccCCCc
Confidence 55999999999999999999988543 38999999999999999999999999999999999999999999964
Q ss_pred cchhhccccccCCCchHHHHHhcCcEEEeeecccccCCCCCC-CCCCcEEEEeeccCCccccccceecCCCceeeeecCC
Q 009041 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP-GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPE 237 (546)
Q Consensus 159 ~~~~e~~l~~~~~spn~~LRk~LdLyanvRPi~~k~iP~~~~-~~~vDiVIvREntEG~Y~g~e~~~~~~g~~~~~~~~~ 237 (546)
. +|+|+|++|||+||||||+|||++.++|.+.. ++++|||||||||||+|+|.++.. +++..+
T Consensus 116 ~---------~~~s~~l~LRk~LdlyanlRPv~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~-~~~~~~------ 179 (435)
T 1tyo_A 116 T---------GYRSLNVAIRQALDLYANIRPVRYYGQPAPHKYADRVDMVIFRENTEDVYAGIEWPH-DSPEAA------ 179 (435)
T ss_dssp S---------CTTHHHHHHHHHHTCCEEEEEEECCSCCCSBTTGGGCEEEEEEECSSSGGGCCEECT-TSHHHH------
T ss_pred c---------cccChhHHHHHHcCCEEEeEEEEecCCCCCCCCcCCCcEEEEecCCCCeeccccccc-CCcccc------
Confidence 3 48999999999999999999975323333221 146999999999999999998752 222110
Q ss_pred CCCCCcccccccc--------cCCceEE-EEeecHHHHHHHHHHHHHHHHcC-CCCEEEEeCCCccccchhHHHHHHHHH
Q 009041 238 DGTGPVELDVYNF--------KGPGIAL-AMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQV 307 (546)
Q Consensus 238 ~G~~~~~~~v~~~--------~~~~va~-~~~~Tr~~ieRiar~AFe~A~~r-kkkVT~v~KaNVlk~tdGlFrei~~eV 307 (546)
.+++| .+++++. .++||+++++||+|+||+||++| +++||+|||+||||.|||||+++|+||
T Consensus 180 --------~v~~~~~~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~ev 251 (435)
T 1tyo_A 180 --------RIRRFLAEEFGISIREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEV 251 (435)
T ss_dssp --------HHHHHHHHHHCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHH
T ss_pred --------ceeccchhhccccCCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHHHHH
Confidence 11111 0235555 58999999999999999999998 688999999999999999999999999
Q ss_pred HHhhhcc-cc-------------ccCCeEEeeEehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccc
Q 009041 308 YEERWRQ-KF-------------EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVL 372 (546)
Q Consensus 308 a~~eYP~-~f-------------~~~dI~~e~~lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSan 372 (546)
|+++||+ .| ++.+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|
T Consensus 252 a~~eypd~~~~e~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapSan 331 (435)
T 1tyo_A 252 ALEKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMN 331 (435)
T ss_dssp HHHHSGGGEEEHHHHHHHSTTCCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEE
T ss_pred HHHhCCCcccccccccccccccccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccCceee
Confidence 9549996 23 34459999999999999999999999 999999999999999999999999999999
Q ss_pred cCCCCCceeecccccccccchhhcccCCCCccCchhHHHHHHHHH-HhhhccCCcHHHHHHHHHHHHHHHHHHHcCCCCc
Q 009041 373 LSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGL-EHRAKLDKNERLLHFVQKLEAACIEAVETGKMTK 451 (546)
Q Consensus 373 ig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL-~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~~T~ 451 (546)
||+++ .||||+|||||| ||||| +|||+|+|||++||| +|+| +.++|++|++||.+++++|++|+
T Consensus 332 ig~~~--a~fEpvHGSAPd-----iAGk~-iANP~A~IlS~amML~~hlg-------~~~~A~~Ie~Av~~~l~~g~~T~ 396 (435)
T 1tyo_A 332 MGDGI--AVAEPVHGTAPK-----YAGKD-LINPSAEILSASLLIGEFMG-------WREVKSIVEYAIRKAVQSKKVTQ 396 (435)
T ss_dssp ECSSC--EEEEESSCCCGG-----GTTSS-CSCCHHHHHHHHHHHHTTSC-------CHHHHHHHHHHHHHHHHTTCCBH
T ss_pred ECCCc--eeeecCCCChHH-----hcCCC-CcCcHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCcCc
Confidence 99877 489999999999 99999 999999999999999 9998 68899999999999999999999
Q ss_pred chhcccCCCCCCCccccCHHHHHHHHHHHHHh
Q 009041 452 DLAILVHGPKVSREFYLNTEEFIDAVATNLGA 483 (546)
Q Consensus 452 DLg~~~~G~~~~~~~~asT~ef~daV~~~L~~ 483 (546)
|||.+.+| .+.++|+||+|+|+++|++
T Consensus 397 Dlgg~~~g-----~~~~~T~e~~daV~~~l~~ 423 (435)
T 1tyo_A 397 DLARHMPG-----VQPLRTSEYTETLIAYIDE 423 (435)
T ss_dssp HHHTTSTT-----CCCBCHHHHHHHHHHHHHH
T ss_pred cccccCCC-----CCCcCHHHHHHHHHHHHhh
Confidence 99822223 1358999999999999953
No 29
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=97.47 E-value=0.0032 Score=68.89 Aligned_cols=218 Identities=19% Similarity=0.216 Sum_probs=143.3
Q ss_pred Ccccccc--ceecCCCceeeeecCCCCCCCcccccccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCE-EEEeCCC
Q 009041 215 DQYRATD--TVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPL-YLSTKNT 291 (546)
Q Consensus 215 G~Y~g~e--~~~~~~g~~~~~~~~~~G~~~~~~~v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkV-T~v~KaN 291 (546)
-+|...+ ++.+..|+++++- +.|. .+--++....++|..+..-+.-|+-+++.|.+.||..+.+. .=.|+.-
T Consensus 418 EEYGSHdKTFei~~~G~v~vvd--~~G~---vl~eh~Ve~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~R 492 (741)
T 1itw_A 418 EEYGSHDKTFQIPADGVVRVTD--ESGK---LLLEQSVEAGDIWRMCQAKDAPIQDWVKLAVNRARATNTPAVFWLDPAR 492 (741)
T ss_dssp GGGGCGGGEEECSSSEEEEEEE--TTCC---EEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCCEEEECCTTS
T ss_pred HHhCCCCcceECCCCceEEEEe--CCCC---EEEEccccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCC
Confidence 4565554 3334456555542 2232 11111222356788888888999999999999999988664 4444332
Q ss_pred ccccchhHHHHHHHHHHHhhhccccccCCeEEeeE-ehhHHHHHH--hhCCCCeeeeccCCcchhhhhhHh--hhcCCcc
Q 009041 292 ILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR-LIDDMVAYA--IKSEGGYVWACKNYDGDVQSDLLA--QGFGSLG 366 (546)
Q Consensus 292 Vlk~tdGlFrei~~eVa~~eYP~~f~~~dI~~e~~-lVDa~amqL--Vk~P~~FVIVt~NlfGDILSDlaA--~l~GslG 366 (546)
. -| .++...| +.|=.+..-.|+.+.-+ -+++|-.-| +++-..-+-||.|..=|+|+||.- .|--|.=
T Consensus 493 a---HD---a~lI~kV--~~yL~~hdt~GLdi~Im~p~~A~~~sleRir~G~dTISVTGNVLRDYLTDLFPIlELGTSAK 564 (741)
T 1itw_A 493 A---HD---AQVIAKV--ERYLKDYDTSGLDIRILSPVEATRFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAK 564 (741)
T ss_dssp H---HH---HHHHHHH--HHHHTTSCCTTCCEEEECHHHHHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSS
T ss_pred c---cH---HHHHHHH--HHHHHhcCCCCCceEeeCHHHHHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchh
Confidence 2 12 3444555 24433333336666555 356665444 556556688999999999999987 4333433
Q ss_pred cccccccCCCCCceeecc-cccccccchhhccc-CCCCccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHH
Q 009041 367 LMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQK-GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAV 444 (546)
Q Consensus 367 lapSanig~d~a~~~FEp-~HGSAPd~~~~~IA-GK~tiANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl 444 (546)
|+.=+=+=..| ++||. +-||||.|..+.+. |-= .=+.++-+||.+.-|+|++.-.+|+.-.-.|+.|++|..+.|
T Consensus 565 MLSIVPLm~GG--GLfETGAGGSAPKHVqQ~~eEnhL-RWDSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L 641 (741)
T 1itw_A 565 MLSIVPLMSGG--GLFETGAGGSAPKHVQQFLEEGYL-RWDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKIL 641 (741)
T ss_dssp SEEEEEBTTSC--EEEESCSSCCCHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccccCC--ccccCCCCcCchHHHHHHHHcCcc-chhhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 32211122233 58999 56899999887543 333 668999999999999999988888888889999999999999
Q ss_pred HcCC
Q 009041 445 ETGK 448 (546)
Q Consensus 445 ~~G~ 448 (546)
++++
T Consensus 642 ~n~K 645 (741)
T 1itw_A 642 DNNK 645 (741)
T ss_dssp HTTC
T ss_pred hCCC
Confidence 8875
No 30
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=97.45 E-value=0.0032 Score=68.81 Aligned_cols=186 Identities=16% Similarity=0.164 Sum_probs=130.5
Q ss_pred CCceEEEEeecHHHHHHHHHHHHHHHHcCCCCE-EEEeCCCccccchhHHHHHHHHHHHhhhccccccCCeEEeeE-ehh
Q 009041 252 GPGIALAMYNVDESIRAFAESSMSLAFSKKWPL-YLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR-LID 329 (546)
Q Consensus 252 ~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkV-T~v~KaNVlk~tdGlFrei~~eVa~~eYP~~f~~~dI~~e~~-lVD 329 (546)
..++|..+..-+.-++-+++.|.+.||..+.+. .=.|+.-. -| .++...| +.|=.+..-.|+.+.-+ -++
T Consensus 448 ~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HD---a~lI~kV--~~yL~~hdt~GLdi~Im~p~~ 519 (738)
T 2b0t_A 448 ANDIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDPERA---HD---RNLASLV--EKYLADHDTEGLDIQILSPVE 519 (738)
T ss_dssp TTCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCTTCH---HH---HHHHHHH--HHHHTTSCCTTCCEEEECHHH
T ss_pred CCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc---cH---HHHHHHH--HHHHHhcCCCCCceEeeCHHH
Confidence 356788888888999999999999999988664 44443322 12 3444555 24433333336666555 356
Q ss_pred HHHHHH--hhCCCCeeeeccCCcchhhhhhHh--hhcCCcccccccccCCCCCceeecc-cccccccchhhccc-CCCCc
Q 009041 330 DMVAYA--IKSEGGYVWACKNYDGDVQSDLLA--QGFGSLGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQK-GQETS 403 (546)
Q Consensus 330 a~amqL--Vk~P~~FVIVt~NlfGDILSDlaA--~l~GslGlapSanig~d~a~~~FEp-~HGSAPd~~~~~IA-GK~ti 403 (546)
+|-.-| +++-.+-+-||.|..=|+|+||.- .|--|.=|+.=+=+=..| ++||. +-||||.|..+.+. |-= .
T Consensus 520 A~~~slerir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GG--GLfETGAGGSAPKHVqQ~~eEnhL-R 596 (738)
T 2b0t_A 520 ATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGG--GLFETGAGGSAPKHVQQVQEENHL-R 596 (738)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTTSC--EEEECCSSCCCHHHHHHHHHHSCC-C
T ss_pred HHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCC--ccccCCCCcCchHHHHHHHHcCcc-c
Confidence 664444 556556688999999999999987 433343332211122233 58999 56899999887543 333 6
Q ss_pred cCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHcCC
Q 009041 404 TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK 448 (546)
Q Consensus 404 ANPiA~IlS~ammL~hlg~ld~~~~l~~~A~~Ie~AV~~vl~~G~ 448 (546)
=+.++-+||.+.-|+|++.-.+|+.-.-.|+.|++|..+.+++++
T Consensus 597 WDSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~K 641 (738)
T 2b0t_A 597 WDSLGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEK 641 (738)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCC
Confidence 689999999999999999887788888899999999999998875
No 31
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=86.25 E-value=0.41 Score=49.51 Aligned_cols=139 Identities=14% Similarity=0.017 Sum_probs=76.4
Q ss_pred eecHHHHHHHHHHHHHHHHcC-C--CCEEEEeCCCccccchhHHH-HHH---HHHHHhhhccccccCCeEEee-EehhHH
Q 009041 260 YNVDESIRAFAESSMSLAFSK-K--WPLYLSTKNTILKKYDGRFK-DIF---QQVYEERWRQKFEEHSIWYEH-RLIDDM 331 (546)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r-k--kkVT~v~KaNVlk~tdGlFr-ei~---~eVa~~eYP~~f~~~dI~~e~-~lVDa~ 331 (546)
.+|.+.+.+.++...+--+++ + ++-..|-==|==.--+|+|= |-- .-.- ++.. +.+|.+.- .=-|.+
T Consensus 174 ~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pai-~~~r----~~Gi~~~GP~paDT~ 248 (328)
T 1yxo_A 174 AISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCL-ERLR----GEGLDLIGPLPADTL 248 (328)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHH-HHHH----TTTCEEEEEECHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHH-HHHH----HCCCceeCCCCchhh
Confidence 378999999988888755542 3 33334433343222345542 111 1111 1121 12777643 445666
Q ss_pred HHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHH
Q 009041 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (546)
Q Consensus 332 amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~I 410 (546)
-.+-.+ ++| ++|+ ||=| .+---+=-+|+--+.|+.-.--..---|-||||-| ||||| +|||.+++
T Consensus 249 F~~~~~--~~~D~vla--MYHD----QGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAfD-----IAGkG-~A~~~Sl~ 314 (328)
T 1yxo_A 249 FTPKHL--EHCDAVLA--MYHD----QGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTALD-----LAGSG-RIDSGSLQ 314 (328)
T ss_dssp TSHHHH--TTCSEEEE--SSHH----HHHHHHHHHHTTSCEEEEESSSSCEEEECSCCCGG-----GTTTC-CCCCHHHH
T ss_pred cccccc--cCCCEEEE--cccc----cccHhHhhcccCcceEEecCCCEEEecCCCCcccc-----ccCCC-CCChHHHH
Confidence 555444 577 4443 4544 33333333445556775421111123589999999 99999 99999999
Q ss_pred HHHHHHH
Q 009041 411 FAWTRGL 417 (546)
Q Consensus 411 lS~ammL 417 (546)
-|.-++.
T Consensus 315 ~Ai~~A~ 321 (328)
T 1yxo_A 315 VALETAY 321 (328)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8854444
No 32
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=86.15 E-value=0.41 Score=49.55 Aligned_cols=135 Identities=10% Similarity=-0.027 Sum_probs=76.5
Q ss_pred eecHHHHHHHHHHHHHHHHcC-C---CCEEEEeCCCccccchhHH--------HHHHHHHHHhhhccccccCCeEEe-eE
Q 009041 260 YNVDESIRAFAESSMSLAFSK-K---WPLYLSTKNTILKKYDGRF--------KDIFQQVYEERWRQKFEEHSIWYE-HR 326 (546)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~r-k---kkVT~v~KaNVlk~tdGlF--------rei~~eVa~~eYP~~f~~~dI~~e-~~ 326 (546)
.+|.+.+.+.++.+.+--+++ + -|+-+.- =|==.--+|+| +-..++.. ++ ||.++ .+
T Consensus 179 ~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g-LNPHAGE~G~~G~EE~~iI~PAi~~lr-~~--------Gi~~~GP~ 248 (334)
T 3lxy_A 179 AITQASLHEVITILDNDLKTKFGITQPQIYVCG-LNPHAGEGGHMGHEEIDTIIPALNTLR-QQ--------GINLIGPL 248 (334)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC-SSGGGGGGGTTCSHHHHTHHHHHHHHH-HT--------TCCEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cCCCCCCCCCCCchhHHHHHHHHHHHH-HC--------CCceeCCC
Confidence 368899999999888766653 3 2555542 11111123444 22222221 11 66554 44
Q ss_pred ehhHHHHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccC
Q 009041 327 LIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTN 405 (546)
Q Consensus 327 lVDa~amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiAN 405 (546)
--|.+-.+-.+ +.| ++|+.+.+ .+---+=-+|+--++|+.-.--..---|-||||-| ||||| +||
T Consensus 249 paDt~F~~~~~--~~~D~vlaMYHD------QGlip~K~l~F~~gVNvTlGLP~iRTS~DHGTAfD-----IAGkG-~A~ 314 (334)
T 3lxy_A 249 PADTLFQPKYL--QHADAVLAMYHD------QGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALE-----LAATG-TAD 314 (334)
T ss_dssp CHHHHTSHHHH--TTCSEEEESSHH------HHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGG-----GTTTT-CSC
T ss_pred ChHHhcChhhh--ccCCEEEEcccc------hhhHhHHhcccCccEEEecCCCeeeecCCCCcchh-----hccCC-CCC
Confidence 56776655444 678 77776554 22111222344456665421111123589999999 99999 999
Q ss_pred chhHHHHHHHHHH
Q 009041 406 SIASIFAWTRGLE 418 (546)
Q Consensus 406 PiA~IlS~ammL~ 418 (546)
|.+++-|.-++.+
T Consensus 315 ~~S~~~Ai~~A~~ 327 (334)
T 3lxy_A 315 VGSFITALNLAIK 327 (334)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9999988555443
No 33
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=85.97 E-value=0.41 Score=49.53 Aligned_cols=139 Identities=12% Similarity=0.006 Sum_probs=76.8
Q ss_pred eecHHHHHHHHHHHHHHHHcCC--CCEEEEeCCCccccchhHH-HHHHHHHH--HhhhccccccCCeEEee-EehhHHHH
Q 009041 260 YNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYEH-RLIDDMVA 333 (546)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~rk--kkVT~v~KaNVlk~tdGlF-rei~~eVa--~~eYP~~f~~~dI~~e~-~lVDa~am 333 (546)
.+|.+.+.+.++...++-++-+ ++-..|-==|==.--+|+| +|--+.+. =++.. +.+|.+.- .=-|.+-.
T Consensus 181 ~it~e~i~~~i~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAi~~~r----~~Gi~~~GP~paDT~F~ 256 (330)
T 2hi1_A 181 TLSTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDAR----AKGMDVYGPCPPDTVFL 256 (330)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCSSCEEEEECSSGGGSSTTSCCHHHHHTHHHHHHHHH----TTTCEEEEEECHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHHH----HCCCceeCCCCchhhcc
Confidence 3799999999999988333233 3433443334322224554 22211111 01121 12777644 44576665
Q ss_pred HHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHHHH
Q 009041 334 YAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFA 412 (546)
Q Consensus 334 qLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS 412 (546)
+-.+ ++| ++|+ ||=| .+---+=-+|+--+.|+.-.--..---|-||||-| ||||| +|||.+++-|
T Consensus 257 ~~~~--~~~D~vla--MYHD----QGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAfD-----IAGkG-~A~~~Sl~~A 322 (330)
T 2hi1_A 257 QAYE--GQYDMVVA--MYHD----QGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFD-----IAWTG-KAKSESMAVS 322 (330)
T ss_dssp HHHT--TSCSEEEE--SSHH----HHHHHHHHCC-CCSEEEEETSSSEEEEESCCCCTT-----TTTTT-CCCCHHHHHH
T ss_pred cccc--ccCCEEEE--cccc----cccHhHhhcccCcceEEecCCCEEEecCCCCcccc-----ccCCC-CCChHHHHHH
Confidence 5443 677 4443 4544 43333334555567775422111123588999999 99999 9999999988
Q ss_pred HHHH
Q 009041 413 WTRG 416 (546)
Q Consensus 413 ~amm 416 (546)
.-++
T Consensus 323 i~~A 326 (330)
T 2hi1_A 323 IKLA 326 (330)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 34
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=85.65 E-value=0.43 Score=49.44 Aligned_cols=135 Identities=13% Similarity=-0.022 Sum_probs=67.0
Q ss_pred eecHHHHHHHHHHHHHHHHcCC--C-CEEEEeCCCccccchhHH-HHH---HHHHHHhhhccccccCCeEEeeE-ehhHH
Q 009041 260 YNVDESIRAFAESSMSLAFSKK--W-PLYLSTKNTILKKYDGRF-KDI---FQQVYEERWRQKFEEHSIWYEHR-LIDDM 331 (546)
Q Consensus 260 ~~Tr~~ieRiar~AFe~A~~rk--k-kVT~v~KaNVlk~tdGlF-rei---~~eVa~~eYP~~f~~~dI~~e~~-lVDa~ 331 (546)
.+|.+.+.+.++...+.-++-+ + |+-+ -==|==.--+|+| +|- ..=+- ++.. +.+|.+.-= =-|.+
T Consensus 196 ~It~~~I~~~i~~~~~~l~~fgi~~PrIaV-~GLNPHaGE~G~~G~EE~~iI~Pai-~~l~----~~gi~v~GP~paDt~ 269 (349)
T 4aty_A 196 RLDQRHVERAARAAVQALQLMGIAHPVVGL-MGINPHAGEGGLFGRDDIDITEPVA-RKLR----DDGMTVIGPQGADLL 269 (349)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTC-CCCCEEE-ECSSGGGGTTTTTCSHHHHTHHHHH-HHHH----HC-CCEEEEECHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCceEE-EecCCCCCccccccchHHHHHHHHH-HHHH----HCCCeEeCCCchhhh
Confidence 3677888877776665554443 3 3332 2222222234554 111 11111 1111 115555433 34554
Q ss_pred HHHHhhCCCCe-eeeccCCcchhhhhhHhhhcCCcccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHH
Q 009041 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (546)
Q Consensus 332 amqLVk~P~~F-VIVt~NlfGDILSDlaA~l~GslGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~I 410 (546)
- .+.+| ++|+ ||=| .+---+=-++.--+.|+.-.--..---|-||||-| ||||| +|||.+++
T Consensus 270 F-----~~~~~D~vla--MYHD----Qgl~p~K~l~f~~~vnitlGLp~iRtS~dHGta~d-----iagkg-~a~~~s~~ 332 (349)
T 4aty_A 270 L-----TNPDIDVFVA--MYHD----QGHIPVKLRAGRHSAALSIGAGVLFSSVGHGSGFD-----IAGTL-LADPAPLL 332 (349)
T ss_dssp T-----TCTTCSEEEE--SSHH----HHHHHHHHHHTTSEEEEEESSSSEEEECCSCCCTT-----STTTT-CCCCHHHH
T ss_pred h-----ccCCCCEEEE--cccc----cchHHHHhcccCCcEEEecCCCeeEeCCCCChhhh-----hccCC-CCChHHHH
Confidence 3 23578 6555 5655 22111112333345564321111123588999999 99999 99999999
Q ss_pred HHHHHHH
Q 009041 411 FAWTRGL 417 (546)
Q Consensus 411 lS~ammL 417 (546)
-|.-++.
T Consensus 333 ~Ai~~a~ 339 (349)
T 4aty_A 333 GAIRLVT 339 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8754443
No 35
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=78.65 E-value=1.1 Score=46.87 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=33.3
Q ss_pred cccccccccCCCCCceeecccccccccchhhcccCCCCccCchhHHHHHHHHHH
Q 009041 365 LGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE 418 (546)
Q Consensus 365 lGlapSanig~d~a~~~FEp~HGSAPd~~~~~IAGK~tiANPiA~IlS~ammL~ 418 (546)
+|+--++|+.-.--..---|-||||-| |||||.+|||.+++-|.-++.+
T Consensus 314 l~F~~gVNvTlGLP~IRTSvDHGTAfD-----IAGkG~~Ad~~Sl~~Ai~~A~~ 362 (367)
T 3tsn_A 314 LYFDKSINVSLNLPIIRVSVDHGTAFD-----KAYKNAKINTKSYFEAAKFAIN 362 (367)
T ss_dssp HCTTTCEEEEESSSSCEEECCCCSCTT-----SCSSCCCCCCHHHHHHHHHHHH
T ss_pred cccCccEEEecCCCeeeecCCCCcchh-----hcCCCCcCChHHHHHHHHHHHH
Confidence 344456665421111123589999999 9999999999999988655544
No 36
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=71.04 E-value=6.5 Score=43.54 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=72.5
Q ss_pred EeeccCCcccccccee-cCCCceeeeecCCCCCCCcccc-cccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEE
Q 009041 209 GRHAFGDQYRATDTVI-KGPGKLKMVFDPEDGTGPVELD-VYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYL 286 (546)
Q Consensus 209 vREntEG~Y~g~e~~~-~~~g~~~~~~~~~~G~~~~~~~-v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~ 286 (546)
--...+|+|.+..... ...+.+++.|...+|.. ..++ --.+...++.++.+++......|.....+-|++.+--..+
T Consensus 172 a~M~~gDFy~~EkS~t~~~a~~~~ie~~~~~G~~-~vLK~~~~l~~gEviDat~Ms~~aL~~F~~~qi~~Ak~~gvLfSl 250 (738)
T 2b0t_A 172 ATMDANDFRHNEKSIILDAADEVQIKHIAADGTE-TILKDSLKLLEGEVLDGTVLSAKALDAFLLEQVARAKAEGILFSA 250 (738)
T ss_dssp ECCSSSSHHHHCEEEECSSCEEEEEEEECSSCCE-EEEEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred eeccCCCccCcceeEEecCCCeEEEEEEcCCCcE-EEecCCCcccCCcEeehhhhcHHHHHHHHHHHHHHHHHcCceeeh
Confidence 3334455565443322 45778888999888752 2221 0112245688889999999999999999999887653444
Q ss_pred EeCCCccccchhHH----HHH-HHHHHHhhhccccccCCe
Q 009041 287 STKNTILKKYDGRF----KDI-FQQVYEERWRQKFEEHSI 321 (546)
Q Consensus 287 v~KaNVlk~tdGlF----rei-~~eVa~~eYP~~f~~~dI 321 (546)
=-|++.||.+|-.. -++ |.+++ +.|.+.|++.||
T Consensus 251 HlKATMMKVSDPIiFGhaV~vf~kdvF-~k~~~~~~~lGv 289 (738)
T 2b0t_A 251 HLKATMMKVSDPIIFGHVVRAYFADVF-AQYGEQLLAAGL 289 (738)
T ss_dssp CBCTTTSTTHHHHHHHHHHHHHTHHHH-HHHHHHHHHTTC
T ss_pred hhhhccccccCcccccchhhhhhHHHH-HHHHHHHHHcCC
Confidence 45999999998642 233 55566 466666665555
No 37
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=69.77 E-value=3.9 Score=45.20 Aligned_cols=118 Identities=15% Similarity=0.202 Sum_probs=78.4
Q ss_pred EeeccCCcccccccee-cCCCceeeeecCCCCCCCcccc-cccccCCceEEEEeecHHHHHHHHHHHHHHHHcCCCCEEE
Q 009041 209 GRHAFGDQYRATDTVI-KGPGKLKMVFDPEDGTGPVELD-VYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYL 286 (546)
Q Consensus 209 vREntEG~Y~g~e~~~-~~~g~~~~~~~~~~G~~~~~~~-v~~~~~~~va~~~~~Tr~~ieRiar~AFe~A~~rkkkVT~ 286 (546)
--...+|+|.+..... ...+.+++.|...+|.. ..++ --.+...++.++.+++......|.....+-|++.+--..+
T Consensus 174 a~M~~gDFy~~EkS~t~~~a~~~~ie~~~~~G~~-~vLK~~~~l~~gEviDat~Ms~~aL~~F~~~qi~~Ak~~gvLfSl 252 (741)
T 1itw_A 174 AHMDNGDFYGSEKAALIGAPGSVKIELIAKDGSS-TVLKAKTSVQAGEIIDSSVMSKNALRNFIAAEIEDAKKQGVLLSV 252 (741)
T ss_dssp ECCSSSSHHHHCEEEECCSSEEEEEEEEETTSCE-EEEEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred eeccCCCccCcceeEEecCCCeEEEEEEcCCCcE-EEecCCCcccCCcEeehhhhcHHHHHHHHHHHHHHHHHcCceeeh
Confidence 3334455555443322 45778888899888752 2221 0112245688889999999999999999999887653444
Q ss_pred EeCCCccccchhHH----HHH-HHHHHHhhhccccccCCeEEeeEeh
Q 009041 287 STKNTILKKYDGRF----KDI-FQQVYEERWRQKFEEHSIWYEHRLI 328 (546)
Q Consensus 287 v~KaNVlk~tdGlF----rei-~~eVa~~eYP~~f~~~dI~~e~~lV 328 (546)
=-|++.||.+|-.. -++ |.+++ +.|.+.|++.||..+.=+-
T Consensus 253 HlKATMMKVSDPIiFGhaV~vf~kdvF-~k~~~~~~~lGvn~nnGlg 298 (741)
T 1itw_A 253 HLKATMMKVSDPIMFGQIVSEFYKDAL-TKHAEVLKQIGFDVNNGIG 298 (741)
T ss_dssp CBCTTTSTTHHHHHHHHHHHHHTHHHH-HHTHHHHHHTTCCGGGCHH
T ss_pred hhhhccccccCcccccchhhhhhHHHH-HHHHHHHHHcCCCcccCHH
Confidence 45999999998642 333 56677 5788888888876554443
No 38
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=64.33 E-value=1.1 Score=47.91 Aligned_cols=16 Identities=6% Similarity=-0.232 Sum_probs=15.4
Q ss_pred CCcEEEEeeccCCccc
Q 009041 203 KKPICIGRHAFGDQYR 218 (546)
Q Consensus 203 ~vDiVIvREntEG~Y~ 218 (546)
++|+||+||||||+|+
T Consensus 156 ~~D~vivREnteg~Y~ 171 (427)
T 2qfy_A 156 ATDTLIPGPGSLELVY 171 (427)
T ss_dssp CEEEEECSSEEEEEEE
T ss_pred CeeEEEeccCccceee
Confidence 6999999999999998
No 39
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=45.89 E-value=51 Score=30.71 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=51.9
Q ss_pred ecccEEEEcCC----ccHHHHHHHHHHHHhcCCCceeEEEEecch-hhh--hhcCCCCcHH---HHHHHHhcCeEEEecc
Q 009041 84 VQNPIVEMDGD----EMTRIIWQMIKDKLIFPYLDLDIKYYDLGI-LNR--DATDDKVTVE---SAEATLKYNVAIKCAT 153 (546)
Q Consensus 84 v~~~I~vlpGD----GIGpEI~~~~~~~l~~~~~~i~~~~~dlG~-~~~--d~tg~~lp~e---tleaik~~daiLkGav 153 (546)
|-++|++|-|- -.++.+.+.+.+.+ .. .++++.+|+.. ..+ |..+ ..|++ ..+.++++|++|.
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~-~~--~~~~~~idl~dLP~~~~d~~~-~~p~~~~~l~~~i~~aD~~ii--- 73 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLA-EG--RLEFHLLHIGDLPHYNDDLWA-DAPESVLRLKDRIEHSDAVLA--- 73 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHH-TT--TEEEEECCGGGSCCCCGGGGG-GCCHHHHHHHHHHHTSSEEEE---
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhc-cC--CCEEEEEecccCCCCCCCccc-CCCHHHHHHHHHHHhCCcEEE---
Confidence 45678999884 67777777766543 23 35566666642 111 1111 23543 4578889999996
Q ss_pred cCCCccchhhccccccCCCchHHHHHhcCcE
Q 009041 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (546)
Q Consensus 154 ~tP~~~~~~e~~l~~~~~spn~~LRk~LdLy 184 (546)
.||.+. .|.-..|.+-||..
T Consensus 74 ~tPeYn-----------~s~pg~LKn~iDwl 93 (190)
T 3u7r_A 74 ITPEYN-----------RSYPGMIKNAIDWA 93 (190)
T ss_dssp ECCCBT-----------TBCCHHHHHHHHHH
T ss_pred echhhc-----------ccCCHHHHHHHHHh
Confidence 568753 35568899999963
No 40
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=33.91 E-value=1e+02 Score=28.51 Aligned_cols=85 Identities=20% Similarity=0.128 Sum_probs=55.2
Q ss_pred ccEEEEcCC----ccHHHHHHHHHH----HHhcCCCceeEEEEecchhhhh---hcCCCC-c---HHHHHHHHhcCeEEE
Q 009041 86 NPIVEMDGD----EMTRIIWQMIKD----KLIFPYLDLDIKYYDLGILNRD---ATDDKV-T---VESAEATLKYNVAIK 150 (546)
Q Consensus 86 ~~I~vlpGD----GIGpEI~~~~~~----~l~~~~~~i~~~~~dlG~~~~d---~tg~~l-p---~etleaik~~daiLk 150 (546)
.+|++|-|- +.+..+.+++.+ .+...+-..+.+.+|++..... ...... + .+..+.++++|++++
T Consensus 12 ~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi 91 (191)
T 3k1y_A 12 RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVV 91 (191)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEE
Confidence 467888774 788888887776 4444433577788888654321 111112 2 367888999999998
Q ss_pred ecccCCCccchhhccccccCCCchHHHHHhcCcE
Q 009041 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (546)
Q Consensus 151 Gav~tP~~~~~~e~~l~~~~~spn~~LRk~LdLy 184 (546)
| +|.+ |.+....|.+-||-.
T Consensus 92 ~---sP~Y-----------~~~~~~~lK~~iD~~ 111 (191)
T 3k1y_A 92 A---TPVF-----------KASYTGLFKMFFDIL 111 (191)
T ss_dssp E---EECB-----------TTBSCHHHHHHHHHS
T ss_pred E---cCcc-----------CCcCcHHHHHHHHHh
Confidence 5 4554 345667888888763
No 41
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=21.98 E-value=49 Score=34.09 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=16.4
Q ss_pred ecccEEEEcCC--ccHHHHHHHH
Q 009041 84 VQNPIVEMDGD--EMTRIIWQMI 104 (546)
Q Consensus 84 v~~~I~vlpGD--GIGpEI~~~~ 104 (546)
|+..|++-.|| ||||||+-.+
T Consensus 1 m~~~iaIT~GDpaGIGpEii~ka 23 (328)
T 1yxo_A 1 MSLRFALTPGEPAGIGPDLCLLL 23 (328)
T ss_dssp CCCCEEEECCSTTSSHHHHHHHH
T ss_pred CCCEEEEcCCCCcchhHHHHHHH
Confidence 33458999999 9999987644
No 42
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=21.68 E-value=1.5e+02 Score=28.70 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=53.9
Q ss_pred ccEEEEcCC----ccHHHHHHHHHHHHhcCCCceeEEEEecchhhhhhcCCCCc---HHHHHHHHhcCeEEEecccCCCc
Q 009041 86 NPIVEMDGD----EMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVT---VESAEATLKYNVAIKCATITPDE 158 (546)
Q Consensus 86 ~~I~vlpGD----GIGpEI~~~~~~~l~~~~~~i~~~~~dlG~~~~d~tg~~lp---~etleaik~~daiLkGav~tP~~ 158 (546)
.+|++|-|- +.+..+.+++.+.+...++ +++.+++........+...+ .+..+.++++|++|++ +|.+
T Consensus 35 mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~--eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~---sP~Y 109 (247)
T 2q62_A 35 PRILILYGSLRTVSYSRLLAEEARRLLEFFGA--EVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWV---SPER 109 (247)
T ss_dssp CEEEEEECCCCSSCHHHHHHHHHHHHHHHTTC--EEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEE---EECS
T ss_pred CeEEEEEccCCCCCHHHHHHHHHHHHHhhCCC--EEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEE---eCCC
Confidence 468888885 8888888888877765554 55556664321111111123 4567789999999985 4654
Q ss_pred cchhhccccccCCCchHHHHHhcCcE
Q 009041 159 TRMKEFGLKSMWRSPNGTIRNILNGT 184 (546)
Q Consensus 159 ~~~~e~~l~~~~~spn~~LRk~LdLy 184 (546)
|.+.-..|.+-||..
T Consensus 110 -----------n~sipa~LKn~iD~l 124 (247)
T 2q62_A 110 -----------HGAMTGIMKAQIDWI 124 (247)
T ss_dssp -----------SSSCCHHHHHHHHTS
T ss_pred -----------CCCccHHHHHHHHHh
Confidence 345667888888864
Done!