Query         009043
Match_columns 546
No_of_seqs    178 out of 2475
Neff          10.0
Searched_HMMs 46136
Date          Thu Mar 28 19:43:04 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009043hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG0156 Cytochrome P450 CYP2 s 100.0   6E-77 1.3E-81  603.6  44.5  444   44-540    27-487 (489)
  2 PLN02290 cytokinin trans-hydro 100.0 1.6E-75 3.6E-80  614.9  52.7  491   20-541    19-515 (516)
  3 KOG0158 Cytochrome P450 CYP3/C 100.0 5.3E-74 1.1E-78  572.9  41.0  450   39-541    27-499 (499)
  4 KOG0157 Cytochrome P450 CYP4/C 100.0 2.8E-73 6.1E-78  588.6  43.4  449   43-541    35-496 (497)
  5 PLN02500 cytochrome P450 90B1  100.0 2.3E-71 5.1E-76  579.2  44.1  438   44-540    39-489 (490)
  6 PLN02183 ferulate 5-hydroxylas 100.0 1.7E-71 3.7E-76  583.1  42.1  450   44-540    37-511 (516)
  7 PLN02169 fatty acid (omega-1)- 100.0 1.2E-70 2.6E-75  572.5  46.2  451   43-540    31-499 (500)
  8 PLN03234 cytochrome P450 83B1; 100.0 5.4E-71 1.2E-75  578.6  43.0  470   16-540     9-498 (499)
  9 PLN02971 tryptophan N-hydroxyl 100.0 1.3E-70 2.9E-75  578.4  44.3  450   43-540    57-533 (543)
 10 PTZ00404 cytochrome P450; Prov 100.0 5.2E-71 1.1E-75  576.2  40.3  440   41-540    27-482 (482)
 11 PLN02687 flavonoid 3'-monooxyg 100.0 9.3E-71   2E-75  577.7  41.7  452   44-543    35-511 (517)
 12 PLN00168 Cytochrome P450; Prov 100.0 4.1E-70 8.9E-75  573.1  45.5  455   43-542    35-518 (519)
 13 PLN00110 flavonoid 3',5'-hydro 100.0 2.7E-70 5.8E-75  570.9  42.1  449   43-541    31-497 (504)
 14 PLN03195 fatty acid omega-hydr 100.0 1.9E-69 4.1E-74  568.5  44.9  447   44-541    31-516 (516)
 15 PLN02394 trans-cinnamate 4-mon 100.0 1.8E-69 3.9E-74  567.7  44.5  460   25-541    20-502 (503)
 16 PLN03112 cytochrome P450 famil 100.0 7.6E-70 1.6E-74  571.6  41.1  478   12-544     9-511 (514)
 17 PLN02966 cytochrome P450 83A1  100.0 1.6E-69 3.6E-74  566.6  41.5  452   44-544    30-501 (502)
 18 PLN02738 carotene beta-ring hy 100.0 1.1E-68 2.3E-73  565.9  44.0  428   80-542   151-596 (633)
 19 PLN02774 brassinosteroid-6-oxi 100.0 8.9E-69 1.9E-73  555.4  41.6  425   44-539    32-462 (463)
 20 PLN02196 abscisic acid 8'-hydr 100.0 9.8E-69 2.1E-73  554.7  41.8  422   44-540    36-462 (463)
 21 KOG0159 Cytochrome P450 CYP11/ 100.0 9.9E-69 2.1E-73  522.1  37.8  447   44-542    51-519 (519)
 22 PLN02655 ent-kaurene oxidase   100.0 3.8E-68 8.2E-73  551.2  41.6  442   45-542     1-465 (466)
 23 PF00067 p450:  Cytochrome P450 100.0   2E-68 4.3E-73  555.7  34.8  445   45-537     1-463 (463)
 24 PLN03141 3-epi-6-deoxocathaste 100.0 4.3E-67 9.2E-72  541.6  41.2  436   44-542     8-451 (452)
 25 PLN02302 ent-kaurenoic acid ox 100.0 3.1E-66 6.7E-71  542.6  47.9  440   42-542    41-489 (490)
 26 PLN03018 homomethionine N-hydr 100.0 1.6E-66 3.5E-71  543.5  43.6  456   43-542    40-525 (534)
 27 PLN02987 Cytochrome P450, fami 100.0 8.5E-66 1.8E-70  531.1  44.2  435   44-543    31-471 (472)
 28 PLN02936 epsilon-ring hydroxyl 100.0 8.7E-66 1.9E-70  535.9  42.9  453   44-544    13-485 (489)
 29 PLN02426 cytochrome P450, fami 100.0 7.2E-64 1.6E-68  520.8  43.8  417   83-542    63-501 (502)
 30 KOG0684 Cytochrome P450 [Secon 100.0   3E-62 6.6E-67  464.7  33.3  439   44-541    32-485 (486)
 31 PLN02648 allene oxide synthase 100.0 1.9E-55 4.1E-60  450.8  31.1  402   43-519    17-465 (480)
 32 COG2124 CypX Cytochrome P450 [ 100.0 8.2E-52 1.8E-56  419.1  31.1  377   85-540    27-410 (411)
 33 PF05952 ComX:  Bacillus compet  41.3      22 0.00048   24.5   1.9   19  360-378     4-22  (57)
 34 PF08492 SRP72:  SRP72 RNA-bind  33.5      30 0.00065   24.2   1.6    8  459-466    44-51  (59)
 35 PF09201 SRX:  SRX;  InterPro:   33.4      33 0.00071   28.4   2.1   22  487-508    19-40  (148)
 36 PF13625 Helicase_C_3:  Helicas  32.8 1.5E+02  0.0032   24.5   6.1   41   80-122    74-114 (129)
 37 PF12508 DUF3714:  Protein of u  28.7      45 0.00098   30.0   2.4   44  395-439    51-94  (200)
 38 COG4459 NapE Periplasmic nitra  27.8 1.1E+02  0.0023   21.0   3.4    7   44-50     55-61  (62)
 39 PHA02902 putative IMV membrane  27.4 1.6E+02  0.0036   20.7   4.3   21   10-30      7-27  (70)
 40 PF11138 DUF2911:  Protein of u  26.8      64  0.0014   27.4   2.8   42  419-462    51-99  (145)
 41 KOG3506 40S ribosomal protein   26.7      30 0.00064   23.5   0.7   12  478-489    11-22  (56)
 42 PF00558 Vpu:  Vpu protein;  In  24.8   1E+02  0.0022   23.2   3.2   35    1-35      1-35  (81)
 43 PHA02681 ORF089 virion membran  23.2      74  0.0016   23.6   2.2   16   12-27     10-25  (92)
 44 PF15330 SIT:  SHP2-interacting  22.4 1.2E+02  0.0026   24.3   3.4   11   50-60     45-55  (107)
 45 KOG3653 Transforming growth fa  20.5 2.4E+02  0.0051   29.2   5.8   39   92-130   222-260 (534)

No 1  
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=6e-77  Score=603.56  Aligned_cols=444  Identities=26%  Similarity=0.433  Sum_probs=364.6

Q ss_pred             CCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcCC
Q 009043           44 GIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNSD  123 (546)
Q Consensus        44 ~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~  123 (546)
                      .||||+++|++||++++...                 .++..+.+|.++||++|.+|+|..++|||+|++.++|++.+++
T Consensus        27 lPPGP~~lPiIGnl~~l~~~-----------------~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d   89 (489)
T KOG0156|consen   27 LPPGPPPLPIIGNLHQLGSL-----------------PPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQD   89 (489)
T ss_pred             CCcCCCCCCccccHHHcCCC-----------------chhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCC
Confidence            79999999999999998631                 3688999999999999999999999999999999999999999


Q ss_pred             CCCCCCCc-hhHHHHhh--cCCcccc-CCchHHHhhhhcccc-CChhhhhhhcchhhhhhhhHHHHHhhhccccccccHH
Q 009043          124 GTYPKVQA-PGFLRKIL--GDGLVTA-GGENWHRQRKLATLA-FYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIP  198 (546)
Q Consensus       124 ~~~~~~~~-~~~~~~~~--g~~l~~~-~g~~w~~~R~~~~~~-f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (546)
                      ..|..++. ......+.  +.|++++ +|+.|+.+||+.... ++...++                          ...+
T Consensus        90 ~~fa~Rp~~~~~~~~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~--------------------------~~~~  143 (489)
T KOG0156|consen   90 LEFADRPDPTATLKYLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGK--------------------------SFME  143 (489)
T ss_pred             ccccCCCCchhhHHHhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhh--------------------------hhHH
Confidence            99977764 22334443  3677777 899999999999854 5555555                          5566


Q ss_pred             HHHHHHHHHHHHhccc-CCceeehHHHHHHHHHHHHhhcccCCCccccc-hHHHHHHHHHH----HHHhhhhhhccc-cc
Q 009043          199 AMVASVEIMLKRWRHS-EGKEIEVSQEFKLLTSEIISRTAFGSSYLEGE-SIFNKLTNMSF----LASRNAYKIKIP-LI  271 (546)
Q Consensus       199 ~~~~~~~~l~~~l~~~-~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~p-~~  271 (546)
                      ...++++.+++.+... .+.++|+...+..++.++|++++||.++..++ +....+..+..    .+.......++| ++
T Consensus       144 ~R~~E~~~l~~~l~~~~~~~~vdl~~~l~~~~~nvI~~~~fG~rf~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l  223 (489)
T KOG0156|consen  144 IREEEVDELVKKLSKSKKGEPVDLSELLDLLVGNVICRMLFGRRFEEEDEEEFLELKELVEESLELLGSFNLSDYFPFLL  223 (489)
T ss_pred             HHHHHHHHHHHHHHhcCCCceeeHHHHHHHHHHHHHHHHHhCCccccCCchHHHHHHHHHHHHHHHhCCccHHHHhhHHH
Confidence            6689999999998852 22799999999999999999999999998643 33443444333    333333456667 34


Q ss_pred             cccccC--CchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHh
Q 009043          272 GDFVKT--SDDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIA  349 (546)
Q Consensus       272 ~~~l~~--~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~a  349 (546)
                       ++++.  ...+.......++..++++.++++++.. +. .  ...|+++.+++...++.... +|++++...+.++++|
T Consensus       224 -~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~-~~-~--~~~D~vD~lL~~~~~~~~~~-~t~~~i~~~~~dl~~A  297 (489)
T KOG0156|consen  224 -RWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKI-GD-E--EGRDFVDALLKLMKEEKAEG-LTDDHLKALILDLFLA  297 (489)
T ss_pred             -HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cc-C--CCCcHHHHHHHhhcccccCC-CCHHHHHHHHHHHHhc
Confidence             55552  2345556666669999999999998876 22 2  33899999999876542222 9999999999999999


Q ss_pred             hcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCC-CCCCccccCCChhHHHHHHhhhcCCCCCCCc-ceeeccccccC
Q 009043          350 GHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQ-KNPAPDGIGKLKTMSMVINESLRLYPPAVNI-SRNVEREVRLG  427 (546)
Q Consensus       350 g~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~-~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~-~r~~~~d~~l~  427 (546)
                      |+|||++|+.|++.+|++||++|+|+|+||++++|. +.++.+|+.++|||+|||+|++|++|++|.. +|.+++|+.|+
T Consensus       298 GtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~r~v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~  377 (489)
T KOG0156|consen  298 GTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKGRLVSESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIG  377 (489)
T ss_pred             ccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeEc
Confidence            999999999999999999999999999999999995 4499999999999999999999999999986 99999999999


Q ss_pred             CeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHh
Q 009043          428 KYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQ  507 (546)
Q Consensus       428 g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~  507 (546)
                      ||.|||||.|++|.|++||||++| +||++|+||||++++ +.. .....++|||.|+|+|||..+|++++.+++++|++
T Consensus       378 Gy~IPkgT~v~vn~~ai~rDp~vw-~dP~eF~PERFl~~~-d~~-~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq  454 (489)
T KOG0156|consen  378 GYDIPKGTTVLVNLWAIHRDPKVW-EDPEEFKPERFLDSN-DGK-GLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQ  454 (489)
T ss_pred             CEEcCCCCEEEEeehhhhcCCccC-CCccccChhhhcCCc-ccc-CCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999 899999999999974 112 25678999999999999999999999999999999


Q ss_pred             hceEEeCCCC-ccCCceeEeeecCCCCeEEEEec
Q 009043          508 RYRFNLSPSY-VHSPVLVVTLRPQHGLQVIFQPL  540 (546)
Q Consensus       508 ~f~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~  540 (546)
                      +|+|+++++. ...... .+...+.++.+...+|
T Consensus       455 ~F~w~~~~~~~d~~e~~-~~~~~~~pl~~~~~~r  487 (489)
T KOG0156|consen  455 RFDWKLPGGKVDMEEAG-LTLKKKKPLKAVPVPR  487 (489)
T ss_pred             eeeeecCCCCCCCcccc-cceecCCcceeeeecC
Confidence            9999988661 222223 5566666666666555


No 2  
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00  E-value=1.6e-75  Score=614.87  Aligned_cols=491  Identities=37%  Similarity=0.683  Sum_probs=390.0

Q ss_pred             HHHHHHHHHHhhchhhHHHHHhhcCCCCCCCCCCCCCHHHHHHHhhhhcc-CCCCCCcccccchhhHHHHHHHHhCCcEE
Q 009043           20 LFIIRLFNKLWWIPNRTQAVMGSQGIRGPAYRLVYGNTKEILSLRNQIWI-SPMGLSHDILPRILPHICSWTKQYGMNFL   98 (546)
Q Consensus        20 ~~~~~~~~~~~~~p~~~~~~~~~~~~Pgp~~~p~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kyG~v~~   98 (546)
                      -+++..+..++..|.+...+++++++|||+++|++||++.+.....+... ......+++.++....+.+|+++||++|+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~   98 (516)
T PLN02290         19 RVAYDTISCYFLTPRRIKKIMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFI   98 (516)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEE
Confidence            33344444566677777778888899999999999999988643221100 01111122334455667899999999999


Q ss_pred             EcccCccEEEeCCHHHHHHHHhcCCCCCCCCCch-hHHHHhhcCCccccCCchHHHhhhhccccCChhhhhhhcchhhhh
Q 009043           99 TWYGSRAQLVITQPELIKEILSNSDGTYPKVQAP-GFLRKILGDGLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMF  177 (546)
Q Consensus        99 ~~~g~~~~vvv~~p~~~~~il~~~~~~~~~~~~~-~~~~~~~g~~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~  177 (546)
                      +++|+.++|+++||+.+++++.++...+.++... ......+|.++++.+|+.|+++|+++++.|+.++++         
T Consensus        99 ~~~g~~~~vvv~dp~~v~~il~~~~~~~~r~~~~~~~~~~~~g~~l~~~~g~~Wk~~Rk~~~~~f~~~~l~---------  169 (516)
T PLN02290         99 YWNGTEPRLCLTETELIKELLTKYNTVTGKSWLQQQGTKHFIGRGLLMANGADWYHQRHIAAPAFMGDRLK---------  169 (516)
T ss_pred             EccCCccEEEECCHHHHHHHHhcCCCCCCCcchhhhHHHHHhcCCccccCchHHHHHHhhcccccCHHHHH---------
Confidence            9999999999999999999998764333443211 123345688999999999999999999999999998         


Q ss_pred             hhhHHHHHhhhccccccccHHHHHHHHHHHHHHhccc---CCceeehHHHHHHHHHHHHhhcccCCCccccchHHHHHHH
Q 009043          178 KLKSVIVMLFNVFAPMQDMIPAMVASVEIMLKRWRHS---EGKEIEVSQEFKLLTSEIISRTAFGSSYLEGESIFNKLTN  254 (546)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~  254 (546)
                                       .+.+.+.++++.+++.+...   ++.++|+.+.+..++++++++++||.++...++....+..
T Consensus       170 -----------------~~~~~i~~~~~~l~~~l~~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~  232 (516)
T PLN02290        170 -----------------GYAGHMVECTKQMLQSLQKAVESGQTEVEIGEYMTRLTADIISRTEFDSSYEKGKQIFHLLTV  232 (516)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHhcCCceEEhHHHHHHHHHHHHHHHHcCCccccchHHHHHHHH
Confidence                             89999999999999999753   2358999999999999999999999988655544444433


Q ss_pred             HHHHHHhhhhhhccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCC-CCCCC
Q 009043          255 MSFLASRNAYKIKIPLIGDFVKTSDDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDP-DMTKR  333 (546)
Q Consensus       255 ~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~-~~~~~  333 (546)
                      .............+|.+ .+++....+..++..+.+.+++.+.++++++....+.......|+++.+++...+. ..+..
T Consensus       233 ~~~~~~~~~~~~~~p~~-~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~  311 (516)
T PLN02290        233 LQRLCAQATRHLCFPGS-RFFPSKYNREIKSLKGEVERLLMEIIQSRRDCVEIGRSSSYGDDLLGMLLNEMEKKRSNGFN  311 (516)
T ss_pred             HHHHHHHhhhhhcCchh-hhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHhccccCCCCCC
Confidence            33322222222234443 45554434456667788889999999888765443221124579999999765422 12235


Q ss_pred             CCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCCCCCCccccCCChhHHHHHHhhhcCCCCC
Q 009043          334 ISLDVLIDECKTFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQKNPAPDGIGKLKTMSMVINESLRLYPPA  413 (546)
Q Consensus       334 l~~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~~~~~~~~~~~lp~l~a~i~EtlRl~p~~  413 (546)
                      ++++++.+++..+++||+|||+++++|++++|++||++|+|+|+||++++++..++++++++||||+|||+||||++|++
T Consensus       312 l~~~~i~~~~~~~~~AG~dTta~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~l~~lpYl~avi~EtlRl~p~~  391 (516)
T PLN02290        312 LNLQLIMDECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGGETPSVDHLSKLTLLNMVINESLRLYPPA  391 (516)
T ss_pred             CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCHHHHhcChHHHHHHHHHHHcCCCc
Confidence            78999999999999999999999999999999999999999999999999977889999999999999999999999999


Q ss_pred             CCcceeeccccccCCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHH
Q 009043          414 VNISRNVEREVRLGKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNF  493 (546)
Q Consensus       414 ~~~~r~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~  493 (546)
                      +.++|.+.+|++++||.|||||.|+++.+++||||++||+||++|+||||++.+.    .....++|||.|+|.|+|++|
T Consensus       392 ~~~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~----~~~~~~~pFG~G~R~C~G~~l  467 (516)
T PLN02290        392 TLLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF----APGRHFIPFAAGPRNCIGQAF  467 (516)
T ss_pred             cccceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC----CCCCeEecCCCCCCCCccHHH
Confidence            9889999999999999999999999999999999999966999999999995321    234579999999999999999


Q ss_pred             HHHHHHHHHHHHHhhceEEeCCCCccCCceeEeeecCCCCeEEEEecc
Q 009043          494 AATEAKIALSMILQRYRFNLSPSYVHSPVLVVTLRPQHGLQVIFQPLS  541 (546)
Q Consensus       494 A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  541 (546)
                      |++|++++++.|+++|++++.++....+....++.|++|++|++++|+
T Consensus       468 A~~el~l~la~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  515 (516)
T PLN02290        468 AMMEAKIILAMLISKFSFTISDNYRHAPVVVLTIKPKYGVQVCLKPLN  515 (516)
T ss_pred             HHHHHHHHHHHHHHhceEeeCCCcccCccceeeecCCCCCeEEEEeCC
Confidence            999999999999999999988765445556788999999999999986


No 3  
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=5.3e-74  Score=572.87  Aligned_cols=450  Identities=28%  Similarity=0.457  Sum_probs=360.2

Q ss_pred             HHhhcCCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHH
Q 009043           39 VMGSQGIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEI  118 (546)
Q Consensus        39 ~~~~~~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~i  118 (546)
                      ++.++++|||+++|++||+..+...+..                ..+..+...++|+++.++.+..|.++|+|||.+++|
T Consensus        27 yw~rrGi~~~~p~p~~Gn~~~~~~~~~~----------------~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I   90 (499)
T KOG0158|consen   27 YWRRRGIPGPKPLPFLGNLPGMLKRERP----------------GDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEI   90 (499)
T ss_pred             hhccCCCCCCCCCCcEecHHHHHhccCc----------------HHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHH
Confidence            4455699999999999999999864321                223333333449999999999999999999999999


Q ss_pred             HhcCCCCCCC--CCchhHHH-HhhcCCccccCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccc
Q 009043          119 LSNSDGTYPK--VQAPGFLR-KILGDGLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQD  195 (546)
Q Consensus       119 l~~~~~~~~~--~~~~~~~~-~~~g~~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (546)
                      +.+..+.|..  +....--. .+...+++..+|+.|+++|..++|.|+..+++                          .
T Consensus        91 ~ik~F~~F~~r~~~~~~d~~~~l~~~~Lf~~~g~~WK~lR~~lsP~Fts~kmk--------------------------~  144 (499)
T KOG0158|consen   91 LIKDFDNFYNRKRPIYGDPEDPLSALNLFFLRGERWKRLRTKLSPTFTSGKLK--------------------------K  144 (499)
T ss_pred             HHHhCccCcCCCCCCcCCCCCcccccCchhccCchHHHHHHhhccccchhhHH--------------------------H
Confidence            9999888966  33211111 33347899999999999999999999999999                          9


Q ss_pred             cHHHHHHHHHHHHHHhcccC--CceeehHHHHHHHHHHHHhhcccCCCccccchHHHHHH----HHHHHHHhhh-----h
Q 009043          196 MIPAMVASVEIMLKRWRHSE--GKEIEVSQEFKLLTSEIISRTAFGSSYLEGESIFNKLT----NMSFLASRNA-----Y  264 (546)
Q Consensus       196 ~~~~~~~~~~~l~~~l~~~~--~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~----~~~~~~~~~~-----~  264 (546)
                      +.+.+++.++++++.++...  +..+++.+...+++.|||++++||.+.++..+....+.    ..........     .
T Consensus       145 m~~t~~~~~~~l~~~l~~~~~~~~~~~~~dl~~~yT~DVI~~~AfG~~~~s~~d~~~~F~~~~~~~~~~~~~~~~l~~~~  224 (499)
T KOG0158|consen  145 MFPTMEEVGDELVRHLRRKSEGGQEGEIKDLCARYTTDVIGSCAFGLDANSLRDPKAEFRRMGRRAFFLSRGLFPLKFML  224 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHhHhhcccchhhhcCchHHHHHhhHHHHHHhhccchHhHhH
Confidence            99999999999999998752  24889999999999999999999998764332222222    2221111100     1


Q ss_pred             hhccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCC---CCCC-CCCHHHHH
Q 009043          265 KIKIPLIGDFVKTSDDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDP---DMTK-RISLDVLI  340 (546)
Q Consensus       265 ~~~~p~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~---~~~~-~l~~~~i~  340 (546)
                      ...+|.+...+  ..........+.+.+.+.+.++.|...   +   ...+|+++.+++...++   .+.. .+|.+||+
T Consensus       225 ~~~~p~l~~~l--~~~~~~~~~~~~~~~~v~~~v~~R~~~---~---~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~  296 (499)
T KOG0158|consen  225 IFLFPKLALPL--RVKLFPEDVTDFFRKLVNSRVEQREKE---N---IERNDFIDLLLDARASDFAKSKSHKALTDDEIA  296 (499)
T ss_pred             HHHhHHHHHhh--hcccChHHHHHHHHHHHHHHHHHHHhc---C---CCCchHHHHHHHhhcccccccccccccCHHHHH
Confidence            12223332221  112234455666666777777766221   1   27899999999887531   1122 59999999


Q ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCCCC-CCccccCCChhHHHHHHhhhcCCCCCCCccee
Q 009043          341 DECKTFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQKN-PAPDGIGKLKTMSMVINESLRLYPPAVNISRN  419 (546)
Q Consensus       341 ~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~~~-~~~~~~~~lp~l~a~i~EtlRl~p~~~~~~r~  419 (546)
                      ++++.+++||.||||+++++++|+|++||++|+|+|+||+++..+.. +++|.+.+|+||++||+||||+||+++...|.
T Consensus       297 aQafvFl~AGfeTts~tlsf~lYeLA~~PdvQ~kLreEI~~~~~~~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~~R~  376 (499)
T KOG0158|consen  297 AQAFVFLLAGFETTASTLSFALYELAKNPDVQDKLREEIDEVLEEKEGLTYDSLSKLKYLDMVIKETLRLYPPAPFLNRE  376 (499)
T ss_pred             HHHHHHHHhhhHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCCCCHHHHhCCcHHHHHHHHHHhhCCCcccccce
Confidence            99999999999999999999999999999999999999999977544 99999999999999999999999999999999


Q ss_pred             eccccccC-CeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHH
Q 009043          420 VEREVRLG-KYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEA  498 (546)
Q Consensus       420 ~~~d~~l~-g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~  498 (546)
                      +++|++++ ++.||||+.|.++++++||||++| |||++|+||||.+++.+  ...+..|+|||.|||.|+|.+||.+|+
T Consensus       377 C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~-p~Pe~F~PERF~~~~~~--~~~~~~ylPFG~GPR~CIGmRfa~mq~  453 (499)
T KOG0158|consen  377 CTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYW-PEPEKFKPERFEEENNK--SRHPGAYLPFGVGPRNCIGMRFALMEA  453 (499)
T ss_pred             ecCceecCCCeEeCCCCEEEeecccccCCcccC-CCcccCCCccCCCCccc--ccCCccccCCCCCccccHHHHHHHHHH
Confidence            99999999 999999999999999999999999 99999999999987443  258899999999999999999999999


Q ss_pred             HHHHHHHHhhceEEeCCCCccCCce---eEeeecCCCCeEEEEecc
Q 009043          499 KIALSMILQRYRFNLSPSYVHSPVL---VVTLRPQHGLQVIFQPLS  541 (546)
Q Consensus       499 ~~~l~~ll~~f~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~  541 (546)
                      |+.|++||++|+++..+...+.-..   ++++.|++|+.+++++|.
T Consensus       454 K~~L~~lL~~f~~~~~~~t~~~~~~~~~~~~l~pk~gi~Lkl~~r~  499 (499)
T KOG0158|consen  454 KLALAHLLRNFSFEVCPTTIIPLEGDPKGFTLSPKGGIWLKLEPRD  499 (499)
T ss_pred             HHHHHHHHhhCEEecCCcccCcccCCccceeeecCCceEEEEEeCC
Confidence            9999999999999987632222233   678999999999999984


No 4  
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00  E-value=2.8e-73  Score=588.57  Aligned_cols=449  Identities=38%  Similarity=0.622  Sum_probs=370.9

Q ss_pred             cCCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcC
Q 009043           43 QGIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNS  122 (546)
Q Consensus        43 ~~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~  122 (546)
                      +.+|||+++|++|++..+....               ..+..++.++..+||++|+.|+|+.++|+++||+.+++|+.++
T Consensus        35 ~~~~gp~~~P~iG~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~   99 (497)
T KOG0157|consen   35 KLPPGPPGWPLIGNLLEFLKPL---------------EEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSS   99 (497)
T ss_pred             ccCCCCCCCCcccchHHhhcch---------------hHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcC
Confidence            3789999999999999997531               2567889999999999999999999999999999999999765


Q ss_pred             CCCCCCCC-chhHHHHhhcCCccccCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHHHH
Q 009043          123 DGTYPKVQ-APGFLRKILGDGLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPAMV  201 (546)
Q Consensus       123 ~~~~~~~~-~~~~~~~~~g~~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (546)
                      ...+.+.+ ....+..++|+|+++.+|+.|+++|++++++|+.+.++                          .+...+.
T Consensus       100 ~~~~~k~~~~~~~~~~~lG~gll~~~g~~W~~~Rk~~~~~f~~~~L~--------------------------~~~~~~~  153 (497)
T KOG0157|consen  100 NENYPKGPDYPESLKPWLGDGLLFSDGEKWHKHRKLLTPAFHFEILK--------------------------SFVPVFI  153 (497)
T ss_pred             cccCCCchhHHHHHHHHhcCccccCCchHHHHHHhhccHhhhHHHHH--------------------------HHHHHHH
Confidence            55566665 44488899999999999999999999999999999999                          8888888


Q ss_pred             HHHHHHHHHhccc-CCceeehHHHHHHHHHHHHhhcccCCCc-c-ccc---hHHHHHHHHHHHHHhhhhhhccc-ccccc
Q 009043          202 ASVEIMLKRWRHS-EGKEIEVSQEFKLLTSEIISRTAFGSSY-L-EGE---SIFNKLTNMSFLASRNAYKIKIP-LIGDF  274 (546)
Q Consensus       202 ~~~~~l~~~l~~~-~~~~vdl~~~~~~~~~~vi~~~~fG~~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~~p-~~~~~  274 (546)
                      +++..+...+... .+..+|+.+.+.++++|+++.++||... . +..   +....+..+...+.   .....| ....+
T Consensus       154 ~~~~~~~~~~~~~~~~~~vd~~~~~~~~tld~i~~~~~G~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~p~~~~~~  230 (497)
T KOG0157|consen  154 ESSLILLLLLELAASGEEVDLQDLLKRLTLDIICKTAMGPESLDAEGPELFEYVQAFDDLTELIS---KRINLPLGTKFL  230 (497)
T ss_pred             HHHHHHHHHHHHhhcCCeEcHHHHHHHHHHHHHHHHhcCCccccccCCcccHHHHHHHHHHHHHH---HHHcCchhhhHH
Confidence            8888777666554 2334999999999999999999999322 1 111   33334333333332   234445 33222


Q ss_pred             ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 009043          275 VKTSDDVEGDKLEQGIRDSIIKMMKTREEKALKGESE--GYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHE  352 (546)
Q Consensus       275 l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~--~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~d  352 (546)
                      ......++.+++.+.+.+++.++|+++++...++...  ....|+++.+.....     ..+++++|.+++.++++||+|
T Consensus       231 ~~~~~~~~~~~a~~~~~~~~~~iI~~rr~~~~~~~~~~~~~~~d~L~~~~~~~~-----~~l~~~~i~d~v~tf~faG~D  305 (497)
T KOG0157|consen  231 YGLKSERKLKKARKILHDFLEKIIRERREELEKEGSGEEKKRLDFLDTLLLEED-----KPLTDEDIRDEVDTFMFAGHD  305 (497)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhHHHHHHHhcc-----CCCCHHHHHHHHHHheeeccc
Confidence            2223577889999999999999999999876543321  245778885333222     468999999999999999999


Q ss_pred             cHHHHHHHHHHHHccChHHHHHHHHHHHHHhCCCCCCccccC--CChhHHHHHHhhhcCCCCCCCcceeecccccc-CCe
Q 009043          353 TTTKLLTWTILLLATHTDWQEKLREEVLELFGQKNPAPDGIG--KLKTMSMVINESLRLYPPAVNISRNVEREVRL-GKY  429 (546)
Q Consensus       353 tt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~~~~~~~~~~--~lp~l~a~i~EtlRl~p~~~~~~r~~~~d~~l-~g~  429 (546)
                      |||++++|+++.|+.||++|+|+++|++++.++....+++..  +|+||++||+|||||+||+|...|.+.+|+++ +||
T Consensus       306 TTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~~~~~~~~m~yl~~vi~EsLRLyppvp~~~R~~~~d~~l~~g~  385 (497)
T KOG0157|consen  306 TTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDDKWEVEKLDQMKYLEMVIKESLRLYPPVPLVARKATKDVKLPGGY  385 (497)
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCCChhhhhhhHHHHHHHHHHhccCCCCchhhcccCCCeEcCCCc
Confidence            999999999999999999999999999999985433333333  59999999999999999999999999999999 589


Q ss_pred             eeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHhhc
Q 009043          430 ILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQRY  509 (546)
Q Consensus       430 ~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f  509 (546)
                      .||||+.|+++++++|||+++||+||++||||||++++.... .+++.|+|||+|+|.|+|++||++|+++++++|+++|
T Consensus       386 ~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~-~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f  464 (497)
T KOG0157|consen  386 TIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAK-RHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRF  464 (497)
T ss_pred             EeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCC-CCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHhe
Confidence            999999999999999999999977999999999997543332 4678999999999999999999999999999999999


Q ss_pred             eEEeCCCCccCCceeEeeecCCCCeEEEEecc
Q 009043          510 RFNLSPSYVHSPVLVVTLRPQHGLQVIFQPLS  541 (546)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  541 (546)
                      +|++..+..+.+....+++|++|++|++++|.
T Consensus       465 ~~~~~~~~~~~~~~~~~l~~~~gl~v~~~~r~  496 (497)
T KOG0157|consen  465 RIEPVGGDKPKPVPELTLRPKNGLKVKLRPRG  496 (497)
T ss_pred             EEEecCCCCceeeeEEEEEecCCeEEEEEeCC
Confidence            99988765467788899999999999999986


No 5  
>PLN02500 cytochrome P450 90B1
Probab=100.00  E-value=2.3e-71  Score=579.24  Aligned_cols=438  Identities=20%  Similarity=0.282  Sum_probs=346.1

Q ss_pred             CCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcCC
Q 009043           44 GIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNSD  123 (546)
Q Consensus        44 ~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~  123 (546)
                      .||||+++|++||++.+.....          +   ..++.++.+++++||++|++++|+.++|+++||+++++++.+++
T Consensus        39 ~PPgp~~~PiiGn~~~~~~~~~----------~---~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~  105 (490)
T PLN02500         39 LPPGNMGWPFLGETIGYLKPYS----------A---TSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEG  105 (490)
T ss_pred             CCCCCcCCCchhhHHHHHhhcc----------c---CChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCC
Confidence            6889999999999876542110          0   24567789999999999999999999999999999999999877


Q ss_pred             CCCCCCCchhHHHHhhc-CCccccCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccc-cHHHHH
Q 009043          124 GTYPKVQAPGFLRKILG-DGLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQD-MIPAMV  201 (546)
Q Consensus       124 ~~~~~~~~~~~~~~~~g-~~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  201 (546)
                      ..|.++.. .....++| .++++.+|+.|+++|+++++.|+..+++                          . +.+.+.
T Consensus       106 ~~f~~~~~-~~~~~~~g~~~~~~~~g~~wr~~Rk~~~~~f~~~~l~--------------------------~~~~~~~~  158 (490)
T PLN02500        106 RLFECSYP-RSIGGILGKWSMLVLVGDMHRDMRSISLNFLSHARLR--------------------------THLLKEVE  158 (490)
T ss_pred             CeEEeeCc-hHHHHHhCcccccccCCHHHHHHHHHHHHhcChHHHH--------------------------HHHHHHHH
Confidence            66644321 22334455 4788889999999999999999998887                          5 567788


Q ss_pred             HHHHHHHHHhcccCCceeehHHHHHHHHHHHHhhcccCCCccccchHHHHHHHHHHHHHhhhhhhccccccccccCCchh
Q 009043          202 ASVEIMLKRWRHSEGKEIEVSQEFKLLTSEIISRTAFGSSYLEGESIFNKLTNMSFLASRNAYKIKIPLIGDFVKTSDDV  281 (546)
Q Consensus       202 ~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  281 (546)
                      +.+..+++.|..  +.++|+.+.+..++++++++++||.+....+  ...+.............  .|   ..+|....+
T Consensus       159 ~~~~~~~~~~~~--~~~vd~~~~~~~~~~~vi~~~~fg~~~~~~~--~~~~~~~~~~~~~~~~~--~~---~~~p~~~~~  229 (490)
T PLN02500        159 RHTLLVLDSWKE--NSTFSAQDEAKKFTFNLMAKHIMSMDPGEEE--TEQLKKEYVTFMKGVVS--AP---LNFPGTAYR  229 (490)
T ss_pred             HHHHHHHHHhCC--CCCEEehHHHHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHhhhhc--ch---hcCCCcccH
Confidence            888888887754  4579999999999999999999998754221  12221111111111100  11   112322234


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhhcccHHHHHHHH
Q 009043          282 EGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHETTTKLLTWT  361 (546)
Q Consensus       282 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~dtt~~~l~~~  361 (546)
                      +..++.+.+.+++.+.+++++++..++.......|+++.+++.       ..++++++++++.++++||+|||+++++|+
T Consensus       230 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~-------~~ls~~~i~~~~~~ll~AG~dTta~tl~~~  302 (490)
T PLN02500        230 KALKSRATILKFIERKMEERIEKLKEEDESVEEDDLLGWVLKH-------SNLSTEQILDLILSLLFAGHETSSVAIALA  302 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcchHHHHHHhc-------cCCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            5666778888889999988776543322111346999999874       248899999999999999999999999999


Q ss_pred             HHHHccChHHHHHHHHHHHHHhC------CCCCCccccCCChhHHHHHHhhhcCCCCCCCcceeeccccccCCeeeCCCC
Q 009043          362 ILLLATHTDWQEKLREEVLELFG------QKNPAPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGKYILPANM  435 (546)
Q Consensus       362 l~~L~~~P~~~~~lr~Ei~~~~~------~~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~~r~~~~d~~l~g~~ip~G~  435 (546)
                      +++|++||++|+|+|+||+++.+      +..++++|+.+|||++|||+||||++|++|.++|.+.+|++++||.|||||
T Consensus       303 l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~d~~~lpyl~avikEtlRl~P~~~~~~R~~~~d~~~~G~~IPkGt  382 (490)
T PLN02500        303 IFFLQGCPKAVQELREEHLEIARAKKQSGESELNWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGW  382 (490)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHHHhccCHHHHHHHHHHHhcCCCccCeeeEeCCCceeCCEEECCCC
Confidence            99999999999999999999863      345899999999999999999999999999989999999999999999999


Q ss_pred             EEEecchhhhcCCCCcCCCCCCccCCCCCCCccccc-----CCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHhhce
Q 009043          436 ELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKAS-----NNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQRYR  510 (546)
Q Consensus       436 ~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~-----~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~  510 (546)
                      .|+++.|++||||++| +||++|+||||++++....     ...+..++|||.|+|+|+|+++|++|+++++++|+++|+
T Consensus       383 ~V~~~~~~~hrdp~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~  461 (490)
T PLN02500        383 KVLPVIAAVHLDSSLY-DQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFN  461 (490)
T ss_pred             EEEechhhcccCcccC-CCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccE
Confidence            9999999999999999 9999999999997532211     024568999999999999999999999999999999999


Q ss_pred             EEeCCCCccCCceeEeeecCCCCeEEEEec
Q 009043          511 FNLSPSYVHSPVLVVTLRPQHGLQVIFQPL  540 (546)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  540 (546)
                      |++.++...... . ..++.+|++|++++.
T Consensus       462 ~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~  489 (490)
T PLN02500        462 WELAEADQAFAF-P-FVDFPKGLPIRVRRI  489 (490)
T ss_pred             EEEcCCCcceec-c-cccCCCCceEEEEeC
Confidence            998766443332 2 335568999999874


No 6  
>PLN02183 ferulate 5-hydroxylase
Probab=100.00  E-value=1.7e-71  Score=583.06  Aligned_cols=450  Identities=22%  Similarity=0.318  Sum_probs=350.6

Q ss_pred             CCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcCC
Q 009043           44 GIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNSD  123 (546)
Q Consensus        44 ~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~  123 (546)
                      .+|||+++|++|++..+..                  ..+.++.+|+++||++|++++|+.++|+|+||+.+++++.++.
T Consensus        37 ~ppgp~~~Pl~G~l~~~~~------------------~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~   98 (516)
T PLN02183         37 YPPGPKGLPIIGNMLMMDQ------------------LTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQD   98 (516)
T ss_pred             CCcCCCCCCeeccHHhcCC------------------cchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhh
Confidence            7899999999999876521                  1245788999999999999999999999999999999999877


Q ss_pred             CCCCCCCchhHHHHhh---cCCccccCCchHHHhhhh-ccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHH
Q 009043          124 GTYPKVQAPGFLRKIL---GDGLVTAGGENWHRQRKL-ATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPA  199 (546)
Q Consensus       124 ~~~~~~~~~~~~~~~~---g~~l~~~~g~~w~~~R~~-~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (546)
                      ..|++++.........   +++++..+|+.|+++|++ +.+.|+.+.++                          .+.+.
T Consensus        99 ~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~--------------------------~~~~~  152 (516)
T PLN02183         99 SVFSNRPANIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAE--------------------------SWASV  152 (516)
T ss_pred             hhhcCCCcccchhccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHH--------------------------HHHHH
Confidence            6776655322222232   356777889999999998 56889988887                          77775


Q ss_pred             HHHHHHHHHHHhcccCCceeehHHHHHHHHHHHHhhcccCCCccccch-HHHHHHHHHHHHHhhhhhhccccccccc-cC
Q 009043          200 MVASVEIMLKRWRHSEGKEIEVSQEFKLLTSEIISRTAFGSSYLEGES-IFNKLTNMSFLASRNAYKIKIPLIGDFV-KT  277 (546)
Q Consensus       200 ~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l-~~  277 (546)
                       .++++.+++.+....+.++|+.+.+..++.+++++++||...+..+. ..+.+...............+|++ .++ +.
T Consensus       153 -~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~  230 (516)
T PLN02183        153 -RDEVDSMVRSVSSNIGKPVNIGELIFTLTRNITYRAAFGSSSNEGQDEFIKILQEFSKLFGAFNVADFIPWL-GWIDPQ  230 (516)
T ss_pred             -HHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHhHhhcCcccchHHHHHHHHHHHHHHhCCccHHHhcchh-Hhcccc
Confidence             46788899888643467899999999999999999999997754322 222222222222111123345554 333 22


Q ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCCcHHHHHHHHcCCCC---------CCCCCCHHHHHHHHH
Q 009043          278 SDDVEGDKLEQGIRDSIIKMMKTREEKALKGE----SEGYGNDYFGLLLKAYHDPD---------MTKRISLDVLIDECK  344 (546)
Q Consensus       278 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~~~~~d~l~~ll~~~~~~~---------~~~~l~~~~i~~~~~  344 (546)
                      ...++..+..+.+.+++.+.++++.++...+.    ......|+++.+++...++.         ....++++++.+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~  310 (516)
T PLN02183        231 GLNKRLVKARKSLDGFIDDIIDDHIQKRKNQNADNDSEEAETDMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIM  310 (516)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccHHHHHHHhhhccccccccccccccCCCCHHHHHHHHH
Confidence            22446667778888888888887765433211    01134689999998543211         123589999999999


Q ss_pred             HHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhC-CCCCCccccCCChhHHHHHHhhhcCCCCCCCcceeeccc
Q 009043          345 TFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFG-QKNPAPDGIGKLKTMSMVINESLRLYPPAVNISRNVERE  423 (546)
Q Consensus       345 ~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~-~~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~~r~~~~d  423 (546)
                      .+++||+|||+++++|++++|++||++|+|+|+||+++++ ++.++.+++++||||+|||+|||||+|++|+..|.+.+|
T Consensus       311 ~~~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~r~~~~d  390 (516)
T PLN02183        311 DVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELADVVGLNRRVEESDLEKLTYLKCTLKETLRLHPPIPLLLHETAED  390 (516)
T ss_pred             HHHHcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHhccChHHHHHHHHHhccCCCccceeeeccCc
Confidence            9999999999999999999999999999999999999998 456899999999999999999999999999999999999


Q ss_pred             cccCCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHHH
Q 009043          424 VRLGKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIALS  503 (546)
Q Consensus       424 ~~l~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~  503 (546)
                      ++++||.|||||.|.++.+++||||++| +||++|+||||++++.......+..++|||.|+|+|+|++||++|+++++|
T Consensus       391 ~~l~g~~IPkGt~V~~~~~~~hrd~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la  469 (516)
T PLN02183        391 AEVAGYFIPKRSRVMINAWAIGRDKNSW-EDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVA  469 (516)
T ss_pred             eeECCEEECCCCEEEEehhhhcCCcccc-CCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999 999999999999753322112456899999999999999999999999999


Q ss_pred             HHHhhceEEeCCCCccCC-----ceeEeeecCCCCeEEEEec
Q 009043          504 MILQRYRFNLSPSYVHSP-----VLVVTLRPQHGLQVIFQPL  540 (546)
Q Consensus       504 ~ll~~f~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~  540 (546)
                      +|+++|++++.++..+.+     ..+.+..+...+.+.+++|
T Consensus       470 ~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  511 (516)
T PLN02183        470 HLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYR  511 (516)
T ss_pred             HHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecC
Confidence            999999999877633221     1123333445667777766


No 7  
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00  E-value=1.2e-70  Score=572.48  Aligned_cols=451  Identities=23%  Similarity=0.318  Sum_probs=350.7

Q ss_pred             cCCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEE---EcccCccEEEeCCHHHHHHHH
Q 009043           43 QGIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFL---TWYGSRAQLVITQPELIKEIL  119 (546)
Q Consensus        43 ~~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~---~~~g~~~~vvv~~p~~~~~il  119 (546)
                      +++|||+++|++||+..+....               ..+++++.+...+||..++   .++|+.++|+|+||+.+++|+
T Consensus        31 ~~~p~p~~~pl~G~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il   95 (500)
T PLN02169         31 HGQPILKNWPFLGMLPGMLHQI---------------PRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHIL   95 (500)
T ss_pred             CCCCCCCCCCcccchHHHHHcc---------------CcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHH
Confidence            3899999999999998775421               1245556666666887665   688999999999999999999


Q ss_pred             hcCCCCCCCCCchhHHHHhhcCCccccCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHH
Q 009043          120 SNSDGTYPKVQAPGFLRKILGDGLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPA  199 (546)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (546)
                      .++...|+++........++|+|+++++|+.|+++|+++++.|+.+.++..                        .+.+.
T Consensus        96 ~~~~~~~~k~~~~~~~~~~~g~gl~~~~g~~Wr~~Rk~l~p~F~~~~~~~~------------------------~~~~~  151 (500)
T PLN02169         96 SSNFGNYPKGPEFKKIFDVLGEGILTVDFELWEDLRKSNHALFHNQDFIEL------------------------SLSSN  151 (500)
T ss_pred             hhCcccCCCcHHHHHHHHhhcCcccccCcHHHHHHHHHHHHHhhhHHHHHH------------------------HHHHH
Confidence            887767777654344456678999999999999999999999998876510                        12355


Q ss_pred             HHHHHHHHHHHhccc--CCceeehHHHHHHHHHHHHhhcccCCCccccc------hHHHHHHHHHHHHHhhhhhhccccc
Q 009043          200 MVASVEIMLKRWRHS--EGKEIEVSQEFKLLTSEIISRTAFGSSYLEGE------SIFNKLTNMSFLASRNAYKIKIPLI  271 (546)
Q Consensus       200 ~~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~p~~  271 (546)
                      +++.++.+++.+...  .+.++|+.+.+.+++++++++++||.+....+      +....+.......   ....+.|.+
T Consensus       152 ~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~  228 (500)
T PLN02169        152 KSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDTSSILMTGYDPMSLSIEMLEVEFGEAADIGEEAI---YYRHFKPVI  228 (500)
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHHHHhheeCCCccccCCCCCCCHHHHHHHHHHHHH---HhHHhccHH
Confidence            666777777777543  45689999999999999999999998764211      1122222221111   112223321


Q ss_pred             c----ccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCcHHHHHHHHcCCCC-CCCCCCHHHHHHHHHH
Q 009043          272 G----DFVKTSDDVEGDKLEQGIRDSIIKMMKTREEKALKG-ESEGYGNDYFGLLLKAYHDPD-MTKRISLDVLIDECKT  345 (546)
Q Consensus       272 ~----~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~d~l~~ll~~~~~~~-~~~~l~~~~i~~~~~~  345 (546)
                      .    .+++....++..++.+.+.+++.+.|++++++..+. .......|+++.+++....+. .+..++++++.+++.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~i~~~~~~  308 (500)
T PLN02169        229 LWRLQNWIGIGLERKMRTALATVNRMFAKIISSRRKEEISRAETEPYSKDALTYYMNVDTSKYKLLKPKKDKFIRDVIFS  308 (500)
T ss_pred             HHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcCHHHHHHhccccccccccCCChHHHHHHHHH
Confidence            1    233334456678888999999999998887653211 111134799999987643211 1234788999999999


Q ss_pred             HHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCCCCCCccccCCChhHHHHHHhhhcCCCCCCCcceeeccccc
Q 009043          346 FYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQKNPAPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVR  425 (546)
Q Consensus       346 ~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~~r~~~~d~~  425 (546)
                      +++||+|||+++++|++++|+.||++|+|+++||++++     +.+++.+||||+||++||||++|++|...|.+.+|.+
T Consensus       309 ~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~~v~-----~~~dl~~L~Yl~avi~EtLRl~P~vp~~~r~~~~d~~  383 (500)
T PLN02169        309 LVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTKF-----DNEDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDV  383 (500)
T ss_pred             HHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhC-----CHHHHhcCHHHHHHHHHHHhcCCCCCcCceecCCCCC
Confidence            99999999999999999999999999999999999874     6789999999999999999999999999888877766


Q ss_pred             c-CCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHHHH
Q 009043          426 L-GKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIALSM  504 (546)
Q Consensus       426 l-~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~  504 (546)
                      + +||.|||||.|++++|++||||++||+||++|+||||++++.......+..|+|||+|+|+|+|++||++|+++++++
T Consensus       384 ~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~  463 (500)
T PLN02169        384 LPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALE  463 (500)
T ss_pred             ccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence            5 999999999999999999999999988999999999997533221123678999999999999999999999999999


Q ss_pred             HHhhceEEeCCCCccCCceeEeeecCCCCeEEEEec
Q 009043          505 ILQRYRFNLSPSYVHSPVLVVTLRPQHGLQVIFQPL  540 (546)
Q Consensus       505 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  540 (546)
                      |+++|+|++.++.........+++|++|++|++++|
T Consensus       464 ll~~f~~~~~~~~~~~~~~~~~l~~~~gl~l~l~~~  499 (500)
T PLN02169        464 IIKNYDFKVIEGHKIEAIPSILLRMKHGLKVTVTKK  499 (500)
T ss_pred             HHHHCEEEEcCCCCcccccceEEecCCCEEEEEEeC
Confidence            999999998765444344557889999999999986


No 8  
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00  E-value=5.4e-71  Score=578.61  Aligned_cols=470  Identities=18%  Similarity=0.287  Sum_probs=365.3

Q ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHhhcCCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCC
Q 009043           16 LVFFLFIIRLFNKLWWIPNRTQAVMGSQGIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGM   95 (546)
Q Consensus        16 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~   95 (546)
                      ++++.+++.++++.++++.+        .+|||+++|++||+..+..                 .+++.++.+++++||+
T Consensus         9 ~l~~~~~~~~~~~~~~~~~~--------~pPgp~~~P~iG~~~~~~~-----------------~~~~~~~~~~~~~yG~   63 (499)
T PLN03234          9 ALVAAAAFFFLRSTTKKSLR--------LPPGPKGLPIIGNLHQMEK-----------------FNPQHFLFRLSKLYGP   63 (499)
T ss_pred             HHHHHHHHHHHHHhcCCCCC--------CCcCCCCCCeeccHHhcCC-----------------CCccHHHHHHHHHcCC
Confidence            33334445555566655555        7999999999999977632                 1346688999999999


Q ss_pred             cEEEcccCccEEEeCCHHHHHHHHhcCCCCCCCCCchhHHHH--hhcCCc-cccCCchHHHhhhhc-cccCChhhhhhhc
Q 009043           96 NFLTWYGSRAQLVITQPELIKEILSNSDGTYPKVQAPGFLRK--ILGDGL-VTAGGENWHRQRKLA-TLAFYAESLRVTK  171 (546)
Q Consensus        96 v~~~~~g~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~--~~g~~l-~~~~g~~w~~~R~~~-~~~f~~~~l~~~~  171 (546)
                      +|++++|+.++|+++||+++++++.++...|.+++.......  ..+.++ +..+++.|+++|+.+ .+.|+++++.   
T Consensus        64 ~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~---  140 (499)
T PLN03234         64 IFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVA---  140 (499)
T ss_pred             eEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchhhhhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHH---
Confidence            999999999999999999999999988777877664322222  123333 334578999999985 5889999998   


Q ss_pred             chhhhhhhhHHHHHhhhccccccccHHHHHHHHHHHHHHhccc--CCceeehHHHHHHHHHHHHhhcccCCCccccchHH
Q 009043          172 SNCLMFKLKSVIVMLFNVFAPMQDMIPAMVASVEIMLKRWRHS--EGKEIEVSQEFKLLTSEIISRTAFGSSYLEGESIF  249 (546)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~~~  249 (546)
                                             .+.+.+.+.++++++.+...  .++++|+.+.+..++++++++++||.+++..++..
T Consensus       141 -----------------------~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~  197 (499)
T PLN03234        141 -----------------------SFRPVREEECQRMMDKIYKAADQSGTVDLSELLLSFTNCVVCRQAFGKRYNEYGTEM  197 (499)
T ss_pred             -----------------------HhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHHHHHHHHHHhCCcccccchhH
Confidence                                   89999999999999999643  46789999999999999999999999886443222


Q ss_pred             HHHHHHHHHHH----hhhhhhcccccccccc--CCchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 009043          250 NKLTNMSFLAS----RNAYKIKIPLIGDFVK--TSDDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLK  323 (546)
Q Consensus       250 ~~~~~~~~~~~----~~~~~~~~p~~~~~l~--~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~  323 (546)
                      ..+........    .......+|.+ .+++  ....++..++.+.+.+++.+.++++++....+   ....|+++.+++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~d~l~~l~~  273 (499)
T PLN03234        198 KRFIDILYETQALLGTLFFSDLFPYF-GFLDNLTGLSARLKKAFKELDTYLQELLDETLDPNRPK---QETESFIDLLMQ  273 (499)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHhhHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCcccHHHHHHH
Confidence            22322211111    11112233433 2221  11235677888899999999998876442211   145799999987


Q ss_pred             HcCCCCCCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCC-CCCCccccCCChhHHHH
Q 009043          324 AYHDPDMTKRISLDVLIDECKTFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQ-KNPAPDGIGKLKTMSMV  402 (546)
Q Consensus       324 ~~~~~~~~~~l~~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~-~~~~~~~~~~lp~l~a~  402 (546)
                      ...++..+..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|++++.++ ..++++++++|||++||
T Consensus       274 ~~~~~~~~~~~~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~av  353 (499)
T PLN03234        274 IYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDKGYVSEEDIPNLPYLKAV  353 (499)
T ss_pred             HhhccCcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHhcChHHHHH
Confidence            65433222368999999999999999999999999999999999999999999999999985 56899999999999999


Q ss_pred             HHhhhcCCCCCCCc-ceeeccccccCCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccc-cCCCCCcccc
Q 009043          403 INESLRLYPPAVNI-SRNVEREVRLGKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKA-SNNTPAAFLP  480 (546)
Q Consensus       403 i~EtlRl~p~~~~~-~r~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~-~~~~~~~~~~  480 (546)
                      |+|+||++|+++.. +|.+.+|++++||.|||||.|+++.+++||||++||+||++|+||||++++... ....+..++|
T Consensus       354 i~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~p  433 (499)
T PLN03234        354 IKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLP  433 (499)
T ss_pred             HHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeC
Confidence            99999999999986 899999999999999999999999999999999997799999999999753221 1124568999


Q ss_pred             cCCCCCCCcchHHHHHHHHHHHHHHHhhceEEeCCCCcc-----CCceeEeeecCCCCeEEEEec
Q 009043          481 FSSGPRICVGLNFAATEAKIALSMILQRYRFNLSPSYVH-----SPVLVVTLRPQHGLQVIFQPL  540 (546)
Q Consensus       481 Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~  540 (546)
                      ||.|+|+|+|+++|++|++++++.|+++|+|+++++..+     ....+.+..|+..+.+.+++|
T Consensus       434 FG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (499)
T PLN03234        434 FGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH  498 (499)
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence            999999999999999999999999999999998865321     122355556777777776654


No 9  
>PLN02971 tryptophan N-hydroxylase
Probab=100.00  E-value=1.3e-70  Score=578.37  Aligned_cols=450  Identities=16%  Similarity=0.240  Sum_probs=349.7

Q ss_pred             cCCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhC-CcEEEcccCccEEEeCCHHHHHHHHhc
Q 009043           43 QGIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYG-MNFLTWYGSRAQLVITQPELIKEILSN  121 (546)
Q Consensus        43 ~~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG-~v~~~~~g~~~~vvv~~p~~~~~il~~  121 (546)
                      +.||||+++|++||++.+...                ...+.++.+|.++|| ++|++++|+.++|+|+||+.+++++.+
T Consensus        57 ~lPPGP~~lPiiGnl~~l~~~----------------~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~  120 (543)
T PLN02971         57 PLPPGPTGFPIVGMIPAMLKN----------------RPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQ  120 (543)
T ss_pred             CCCcCCCCCCcccchHHhccC----------------CcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHh
Confidence            378899999999999887531                113567889999999 799999999999999999999999998


Q ss_pred             CCCCCCCCCchhHHHHhhcCC----ccccCCchHHHhhhhcccc-CChhhhhhhcchhhhhhhhHHHHHhhhcccccccc
Q 009043          122 SDGTYPKVQAPGFLRKILGDG----LVTAGGENWHRQRKLATLA-FYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDM  196 (546)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~g~~----l~~~~g~~w~~~R~~~~~~-f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (546)
                      ++..|.+++... ....+|++    ++..+|+.|+++|+++++. ++...++                          .+
T Consensus       121 ~~~~f~~rp~~~-~~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~--------------------------~~  173 (543)
T PLN02971        121 QDALFASRPLTY-AQKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHR--------------------------WL  173 (543)
T ss_pred             cchhhcCCCccc-chhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHH--------------------------HH
Confidence            887887766322 33444544    6777899999999999755 4444555                          67


Q ss_pred             HHHHHHHHHHHHHHhccc--CCceeehHHHHHHHHHHHHhhcccCCCcccc------ch---HHHHHHHHHHHHHhh---
Q 009043          197 IPAMVASVEIMLKRWRHS--EGKEIEVSQEFKLLTSEIISRTAFGSSYLEG------ES---IFNKLTNMSFLASRN---  262 (546)
Q Consensus       197 ~~~~~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~------~~---~~~~~~~~~~~~~~~---  262 (546)
                      .+.++++++.+++.+...  +++++|+.+.+.+++++++++++||.++...      ++   ....+..+.......   
T Consensus       174 ~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (543)
T PLN02971        174 HDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYCGNAIKRLMFGTRTFSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAF  253 (543)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhCCcccccccccccchhHHHHHHHHHHHHHHHhccCC
Confidence            788888888888877542  3568999999999999999999999876321      11   122222222211111   


Q ss_pred             hhhhccccccccccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHH
Q 009043          263 AYKIKIPLIGDFVKT-SDDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLID  341 (546)
Q Consensus       263 ~~~~~~p~~~~~l~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~  341 (546)
                      ....++|.+ ++++. ...+...+..+.+.+++.+.++++++....+.. ....|+++.+++...++ ....++++++.+
T Consensus       254 ~~~~~~p~l-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~d~l~~ll~~~~~~-~~~~ls~~~i~~  330 (543)
T PLN02971        254 CISDYLPML-TGLDLNGHEKIMRESSAIMDKYHDPIIDERIKMWREGKR-TQIEDFLDIFISIKDEA-GQPLLTADEIKP  330 (543)
T ss_pred             cHHHhCCch-hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCcCHHHHHHhhhccc-CCCCCCHHHHHH
Confidence            112334544 33221 112334555677888888888887664432221 13479999999864322 122489999999


Q ss_pred             HHHHHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhC-CCCCCccccCCChhHHHHHHhhhcCCCCCCC-ccee
Q 009043          342 ECKTFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFG-QKNPAPDGIGKLKTMSMVINESLRLYPPAVN-ISRN  419 (546)
Q Consensus       342 ~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~-~~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~-~~r~  419 (546)
                      ++.++++||+|||+++++|++++|++||++|+|+|+||+++++ ++.++++++.+|||++|||+|+||++|++|. ++|.
T Consensus       331 ~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~EI~~v~g~~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~  410 (543)
T PLN02971        331 TIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRVVGKERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHV  410 (543)
T ss_pred             hHHHHheeccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHhccCHHHHHHHHHHHhcCCCcccCccee
Confidence            9999999999999999999999999999999999999999998 4779999999999999999999999999998 4999


Q ss_pred             eccccccCCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccc-cCCCCCcccccCCCCCCCcchHHHHHHH
Q 009043          420 VEREVRLGKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKA-SNNTPAAFLPFSSGPRICVGLNFAATEA  498 (546)
Q Consensus       420 ~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~-~~~~~~~~~~Fg~G~r~C~G~~~A~~~~  498 (546)
                      +.+|++++||.|||||.|++++|++||||++| +||++|+||||++++.+. ....+..++|||.|+|.|+|++||+.|+
T Consensus       411 ~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~  489 (543)
T PLN02971        411 ALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVW-SDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAIT  489 (543)
T ss_pred             cCCCeeECCEEECCCCEEEECcHHhcCChhhC-CCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999 999999999999753221 1124568999999999999999999999


Q ss_pred             HHHHHHHHhhceEEeCCCCcc---CCceeEeeecCCCCeEEEEec
Q 009043          499 KIALSMILQRYRFNLSPSYVH---SPVLVVTLRPQHGLQVIFQPL  540 (546)
Q Consensus       499 ~~~l~~ll~~f~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~  540 (546)
                      ++++++||++|+|++.++...   .+..+ ++.-.+.+.|.+++|
T Consensus       490 ~~~la~ll~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  533 (543)
T PLN02971        490 TMMLARLLQGFKWKLAGSETRVELMESSH-DMFLSKPLVMVGELR  533 (543)
T ss_pred             HHHHHHHHHhCEEEeCCCCCCcchhhhcC-cccccccceeeeeec
Confidence            999999999999998754222   12233 554556899999998


No 10 
>PTZ00404 cytochrome P450; Provisional
Probab=100.00  E-value=5.2e-71  Score=576.20  Aligned_cols=440  Identities=20%  Similarity=0.332  Sum_probs=345.2

Q ss_pred             hhcCCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHh
Q 009043           41 GSQGIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILS  120 (546)
Q Consensus        41 ~~~~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~  120 (546)
                      +.+.+|||+++|++||+..+..                  +++.++.+++++||++|++++|+.++|+++||+.+++++.
T Consensus        27 ~~~~~pgp~~~p~~G~~~~~~~------------------~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~   88 (482)
T PTZ00404         27 HKNELKGPIPIPILGNLHQLGN------------------LPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFV   88 (482)
T ss_pred             cCCCCCCCCCCCeeccHhhhcc------------------cHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHH
Confidence            3458999999999999987742                  3477889999999999999999999999999999999998


Q ss_pred             cCCCCCCCCCchh-HHHHhhcCCccccCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHH
Q 009043          121 NSDGTYPKVQAPG-FLRKILGDGLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPA  199 (546)
Q Consensus       121 ~~~~~~~~~~~~~-~~~~~~g~~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (546)
                      ++...|.+++... .....+|+|+++.+|+.|+++|+++++.|+.++++                          .+.+.
T Consensus        89 ~~~~~~~~r~~~~~~~~~~~~~~l~~~~g~~w~~~Rk~~~~~f~~~~l~--------------------------~~~~~  142 (482)
T PTZ00404         89 DNFDNFSDRPKIPSIKHGTFYHGIVTSSGEYWKRNREIVGKAMRKTNLK--------------------------HIYDL  142 (482)
T ss_pred             hcchhhcCCCCcceeeeeccCCceeccChHHHHHHHHHHHHHHhhhccc--------------------------cHHHH
Confidence            7665675544222 22223478899999999999999999999999998                          89999


Q ss_pred             HHHHHHHHHHHhccc--CCceeehHHHHHHHHHHHHhhcccCCCccccch----HHHHHHH----HHHHHHhhhhhhccc
Q 009043          200 MVASVEIMLKRWRHS--EGKEIEVSQEFKLLTSEIISRTAFGSSYLEGES----IFNKLTN----MSFLASRNAYKIKIP  269 (546)
Q Consensus       200 ~~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~p  269 (546)
                      +.+.++.+++.|...  .++.+|+.+.+.+++++++++++||.++...++    ....+.+    +............++
T Consensus       143 i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (482)
T PTZ00404        143 LDDQVDVLIESMKKIESSGETFEPRYYLTKFTMSAMFKYIFNEDISFDEDIHNGKLAELMGPMEQVFKDLGSGSLFDVIE  222 (482)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhh
Confidence            999999999998643  466799999999999999999999998753221    1112222    211111111111111


Q ss_pred             cccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHh
Q 009043          270 LIGDFVKTSDDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIA  349 (546)
Q Consensus       270 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~a  349 (546)
                      .+ ..+.........+..+.+.+++.+.++++++....    ....|+++.+++...+.   ...+.+++++++..+++|
T Consensus       223 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~dll~~ll~~~~~~---~~~~~~~i~~~~~~~~~A  294 (482)
T PTZ00404        223 IT-QPLYYQYLEHTDKNFKKIKKFIKEKYHEHLKTIDP----EVPRDLLDLLIKEYGTN---TDDDILSILATILDFFLA  294 (482)
T ss_pred             Hh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CCcccHHHHHHHHhccC---CcccHHHHHHHHHHHHHh
Confidence            11 10000011223345566666666666555443211    14579999999874321   122334589999999999


Q ss_pred             hcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCC-CCCCccccCCChhHHHHHHhhhcCCCCCCC-cceeecccccc-
Q 009043          350 GHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQ-KNPAPDGIGKLKTMSMVINESLRLYPPAVN-ISRNVEREVRL-  426 (546)
Q Consensus       350 g~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~-~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~-~~r~~~~d~~l-  426 (546)
                      |+|||+++++|++++|++||++|+|+++||++++++ ..++++++++||||+||++||||++|++|. ++|.+.+|+++ 
T Consensus       295 G~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~  374 (482)
T PTZ00404        295 GVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGRNKVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIG  374 (482)
T ss_pred             ccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHhcCCcccccceeccCCEEec
Confidence            999999999999999999999999999999999984 568999999999999999999999999997 59999999999 


Q ss_pred             CCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHH
Q 009043          427 GKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIALSMIL  506 (546)
Q Consensus       427 ~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll  506 (546)
                      +||.|||||.|.++.+++||||++| |||++|+||||++.      ..+..++|||.|+|.|+|++||++|++++++.|+
T Consensus       375 ~g~~Ip~Gt~V~~~~~a~hrdp~~~-~dP~~F~PeRwl~~------~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll  447 (482)
T PTZ00404        375 GGHFIPKDAQILINYYSLGRNEKYF-ENPEQFDPSRFLNP------DSNDAFMPFSIGPRNCVGQQFAQDELYLAFSNII  447 (482)
T ss_pred             CCeEECCCCEEEeeHHHhhCCcccc-CCccccCccccCCC------CCCCceeccCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 99999999999974      2456899999999999999999999999999999


Q ss_pred             hhceEEeCCCCcc--CCceeEeeecCCCCeEEEEec
Q 009043          507 QRYRFNLSPSYVH--SPVLVVTLRPQHGLQVIFQPL  540 (546)
Q Consensus       507 ~~f~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~  540 (546)
                      ++|++++.++.+.  ......+.. .++++|++++|
T Consensus       448 ~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~R  482 (482)
T PTZ00404        448 LNFKLKSIDGKKIDETEEYGLTLK-PNKFKVLLEKR  482 (482)
T ss_pred             HhcEEecCCCCCCCcccccceeec-CCCceeeeecC
Confidence            9999998765332  223345566 46899999886


No 11 
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00  E-value=9.3e-71  Score=577.65  Aligned_cols=452  Identities=19%  Similarity=0.323  Sum_probs=358.1

Q ss_pred             CCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcCC
Q 009043           44 GIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNSD  123 (546)
Q Consensus        44 ~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~  123 (546)
                      .||||+++|++||++.+..                  +++.++.+|+++||++|++++|+.++|+++||+.+++++.++.
T Consensus        35 ~pPgp~~~P~iG~~~~~~~------------------~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~   96 (517)
T PLN02687         35 LPPGPRGWPVLGNLPQLGP------------------KPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHD   96 (517)
T ss_pred             CCccCCCCCccccHHhcCC------------------chhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcc
Confidence            6889999999999877732                  3577899999999999999999999999999999999998877


Q ss_pred             CCCCCCCchhHHHHhh---cCCccccCCchHHHhhhhcc-ccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHH
Q 009043          124 GTYPKVQAPGFLRKIL---GDGLVTAGGENWHRQRKLAT-LAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPA  199 (546)
Q Consensus       124 ~~~~~~~~~~~~~~~~---g~~l~~~~g~~w~~~R~~~~-~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (546)
                      ..|.+++.......+.   +.+++..+|+.|+++|+++. +.|+.++++                          .+.+.
T Consensus        97 ~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~--------------------------~~~~~  150 (517)
T PLN02687         97 ANFSNRPPNSGAEHMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALD--------------------------DFRHV  150 (517)
T ss_pred             hhhhcCCCccchhhhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHH--------------------------HhHHH
Confidence            6787765332222222   23455667999999999998 789999998                          89999


Q ss_pred             HHHHHHHHHHHhccc-CCceeehHHHHHHHHHHHHhhcccCCCccc--cchHHHHHHHHHHHHHh----hhhhhcccccc
Q 009043          200 MVASVEIMLKRWRHS-EGKEIEVSQEFKLLTSEIISRTAFGSSYLE--GESIFNKLTNMSFLASR----NAYKIKIPLIG  272 (546)
Q Consensus       200 ~~~~~~~l~~~l~~~-~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~p~~~  272 (546)
                      +.++++++++.+... +++++|+.+.+..+++++++.++||.++..  +++....+.........    ......+|.+ 
T Consensus       151 i~~~~~~l~~~l~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l-  229 (517)
T PLN02687        151 REEEVALLVRELARQHGTAPVNLGQLVNVCTTNALGRAMVGRRVFAGDGDEKAREFKEMVVELMQLAGVFNVGDFVPAL-  229 (517)
T ss_pred             HHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHhCccccccCCcchHHHHHHHHHHHHHHhccCcHHHHhhhH-
Confidence            999999999999653 456899999999999999999999998642  11212222222222111    1111234544 


Q ss_pred             ccccCC-chhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCC---CCCCCCCHHHHHHHHHHHHH
Q 009043          273 DFVKTS-DDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDP---DMTKRISLDVLIDECKTFYI  348 (546)
Q Consensus       273 ~~l~~~-~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~---~~~~~l~~~~i~~~~~~~~~  348 (546)
                      .+++.. ..++..+..+.+.+++.+.++++++....+..  ...|+++.+++...++   ..+..++++++.+++..+++
T Consensus       230 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~--~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  307 (517)
T PLN02687        230 RWLDLQGVVGKMKRLHRRFDAMMNGIIEEHKAAGQTGSE--EHKDLLSTLLALKREQQADGEGGRITDTEIKALLLNLFT  307 (517)
T ss_pred             HHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc--ccccHHHHHHHhhccccccccccCCCHHHHHHHHHHHhc
Confidence            333221 23455667788888899999888765432111  4579999999865431   12346999999999999999


Q ss_pred             hhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhC-CCCCCccccCCChhHHHHHHhhhcCCCCCCC-cceeecccccc
Q 009043          349 AGHETTTKLLTWTILLLATHTDWQEKLREEVLELFG-QKNPAPDGIGKLKTMSMVINESLRLYPPAVN-ISRNVEREVRL  426 (546)
Q Consensus       349 ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~-~~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~-~~r~~~~d~~l  426 (546)
                      ||+|||+++++|++++|++||++|+|+++||+++.+ ++.++.+++++||||+|||+||||++|+++. ++|.+.+|+++
T Consensus       308 AG~eTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~  387 (517)
T PLN02687        308 AGTDTTSSTVEWAIAELIRHPDILKKAQEELDAVVGRDRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEI  387 (517)
T ss_pred             cccCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeE
Confidence            999999999999999999999999999999999987 4668999999999999999999999999997 59999999999


Q ss_pred             CCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccc---cCCCCCcccccCCCCCCCcchHHHHHHHHHHHH
Q 009043          427 GKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKA---SNNTPAAFLPFSSGPRICVGLNFAATEAKIALS  503 (546)
Q Consensus       427 ~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~---~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~  503 (546)
                      +||.||+||.|.++.+++||||++| +||++|+||||+++....   ....+..++|||.|+|.|+|++||++|++++++
T Consensus       388 ~g~~ip~Gt~v~~~~~~~h~d~~~~-~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la  466 (517)
T PLN02687        388 NGYHIPKGATLLVNVWAIARDPEQW-PDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTA  466 (517)
T ss_pred             CCEEECCCCEEEEecHHhcCCcccC-CCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999 999999999999753211   112345799999999999999999999999999


Q ss_pred             HHHhhceEEeCCCCccCC-----ceeEeeecCCCCeEEEEecccc
Q 009043          504 MILQRYRFNLSPSYVHSP-----VLVVTLRPQHGLQVIFQPLSVN  543 (546)
Q Consensus       504 ~ll~~f~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~  543 (546)
                      +||++|+|++.++..+..     ....+..+..++.|++++|+-|
T Consensus       467 ~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~  511 (517)
T PLN02687        467 TLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPRLLP  511 (517)
T ss_pred             HHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccCCCh
Confidence            999999999876532211     2234455666788888888644


No 12 
>PLN00168 Cytochrome P450; Provisional
Probab=100.00  E-value=4.1e-70  Score=573.05  Aligned_cols=455  Identities=19%  Similarity=0.312  Sum_probs=357.2

Q ss_pred             cCCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcC
Q 009043           43 QGIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNS  122 (546)
Q Consensus        43 ~~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~  122 (546)
                      +.+|||+++|++||+..+....               ..++.++.+|+++||++|++++|+.++|+|+||+.+++++.++
T Consensus        35 ~lpPgp~~~pl~G~l~~~~~~~---------------~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~   99 (519)
T PLN00168         35 RLPPGPPAVPLLGSLVWLTNSS---------------ADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVER   99 (519)
T ss_pred             CCCcCCCCCcccccHHhhcccc---------------ccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhc
Confidence            4788999999999997653210               2356788999999999999999999999999999999999988


Q ss_pred             CCCCCCCCchhHHHHhhc--CCccc--cCCchHHHhhh-hccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccH
Q 009043          123 DGTYPKVQAPGFLRKILG--DGLVT--AGGENWHRQRK-LATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMI  197 (546)
Q Consensus       123 ~~~~~~~~~~~~~~~~~g--~~l~~--~~g~~w~~~R~-~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (546)
                      ...|++++... ...++|  .+++.  .+|+.|+++|| ++.+.|+.++++                          .+.
T Consensus       100 ~~~f~~rp~~~-~~~~~~~~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~--------------------------~~~  152 (519)
T PLN00168        100 GAALADRPAVA-SSRLLGESDNTITRSSYGPVWRLLRRNLVAETLHPSRVR--------------------------LFA  152 (519)
T ss_pred             CCccccCCccc-chhhhccCCCceeCCCCCHHHHHHHHHHHHhccCHHHHH--------------------------HHH
Confidence            87786665322 223344  23444  67999999987 788999999999                          999


Q ss_pred             HHHHHHHHHHHHHhccc--CCceeehHHHHHHHHHHHHhhcccCCCccccchHHHHHHHHHHHH----Hh-hhhhhcccc
Q 009043          198 PAMVASVEIMLKRWRHS--EGKEIEVSQEFKLLTSEIISRTAFGSSYLEGESIFNKLTNMSFLA----SR-NAYKIKIPL  270 (546)
Q Consensus       198 ~~~~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~p~  270 (546)
                      +.+.+.++.+++.+...  .+..+|+.+.+..++.++++.++||.+++...  ...+.......    .. ......+|.
T Consensus       153 ~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~ii~~~~fG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~  230 (519)
T PLN00168        153 PARAWVRRVLVDKLRREAEDAAAPRVVETFQYAMFCLLVLMCFGERLDEPA--VRAIAAAQRDWLLYVSKKMSVFAFFPA  230 (519)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCcChhh--HHHHHHHHHHHHHHhcCCCCHHHhCcc
Confidence            99999999999999753  23468999999999999999999999876321  22222221111    11 111233454


Q ss_pred             ccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhc----CCCC----CCCCcHHHHHHHHcCCCCCCCCCCHHHHHHH
Q 009043          271 IGDFVKTSDDVEGDKLEQGIRDSIIKMMKTREEKALK----GESE----GYGNDYFGLLLKAYHDPDMTKRISLDVLIDE  342 (546)
Q Consensus       271 ~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~----~~~~----~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~  342 (546)
                      +..++......+..+..+.+.+++.++++++++....    +...    ....|+++.+++....+..+..++++++.++
T Consensus       231 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~  310 (519)
T PLN00168        231 VTKHLFRGRLQKALALRRRQKELFVPLIDARREYKNHLGQGGEPPKKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNL  310 (519)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccccccccccccHHHHHHhhhccccccCCCCHHHHHHH
Confidence            3222221223445567888889999999887764311    1000    0146899999976432222346999999999


Q ss_pred             HHHHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCC--CCCCccccCCChhHHHHHHhhhcCCCCCCCc-cee
Q 009043          343 CKTFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQ--KNPAPDGIGKLKTMSMVINESLRLYPPAVNI-SRN  419 (546)
Q Consensus       343 ~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~--~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~-~r~  419 (546)
                      +.++++||+|||+++++|++++|++||++|+|+++||++++++  +.++.+++.+||||+||++||||++|+++.. +|.
T Consensus       311 ~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~  390 (519)
T PLN00168        311 CSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHK  390 (519)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCcc
Confidence            9999999999999999999999999999999999999999974  5689999999999999999999999999876 899


Q ss_pred             eccccccCCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccc----cCCCCCcccccCCCCCCCcchHHHH
Q 009043          420 VEREVRLGKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKA----SNNTPAAFLPFSSGPRICVGLNFAA  495 (546)
Q Consensus       420 ~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~----~~~~~~~~~~Fg~G~r~C~G~~~A~  495 (546)
                      +.+|++++||.|||||.|.++.+++||||++| |||++|+||||++.....    ....+..++|||.|+|+|+|++||+
T Consensus       391 ~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~-~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~  469 (519)
T PLN00168        391 AAEDMEVGGYLIPKGATVNFMVAEMGRDEREW-ERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAM  469 (519)
T ss_pred             CCCCccCCCEEECCCCEEEEChHHHhcCcccc-CCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHH
Confidence            99999999999999999999999999999999 999999999999742211    1123467999999999999999999


Q ss_pred             HHHHHHHHHHHhhceEEeCCCCccCC--ceeEeeecCCCCeEEEEeccc
Q 009043          496 TEAKIALSMILQRYRFNLSPSYVHSP--VLVVTLRPQHGLQVIFQPLSV  542 (546)
Q Consensus       496 ~~~~~~l~~ll~~f~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~  542 (546)
                      +|+++++++||++|+|++.++.+...  ...++..+.++++|++++|+.
T Consensus       470 ~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~  518 (519)
T PLN00168        470 LHLEYFVANMVREFEWKEVPGDEVDFAEKREFTTVMAKPLRARLVPRRT  518 (519)
T ss_pred             HHHHHHHHHHHHHccceeCCCCcCChhhhceeEEeecCCcEEEEEeccC
Confidence            99999999999999999876533322  234677888899999999874


No 13 
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00  E-value=2.7e-70  Score=570.92  Aligned_cols=449  Identities=17%  Similarity=0.312  Sum_probs=356.5

Q ss_pred             cCCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcC
Q 009043           43 QGIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNS  122 (546)
Q Consensus        43 ~~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~  122 (546)
                      +.||||+++|++|+++.+..                  .++.++.+++++||+||++++|+.++|+|+||+.+++++.++
T Consensus        31 ~~pPgp~~~Pl~G~l~~~~~------------------~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~   92 (504)
T PLN00110         31 KLPPGPRGWPLLGALPLLGN------------------MPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTL   92 (504)
T ss_pred             CCcccCCCCCeeechhhcCC------------------chHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhc
Confidence            37899999999999876531                  246789999999999999999999999999999999999987


Q ss_pred             CCCCCCCCchh-HHHHhhc--CCccccCCchHHHhhhhccc-cCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHH
Q 009043          123 DGTYPKVQAPG-FLRKILG--DGLVTAGGENWHRQRKLATL-AFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIP  198 (546)
Q Consensus       123 ~~~~~~~~~~~-~~~~~~g--~~l~~~~g~~w~~~R~~~~~-~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (546)
                      ...|++++... .....+|  +++++.+|+.|+++|+.+++ .|+.++++                          .+.+
T Consensus        93 ~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~--------------------------~~~~  146 (504)
T PLN00110         93 DINFSNRPPNAGATHLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALE--------------------------DWSQ  146 (504)
T ss_pred             chhhcCCCCccchhhhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHH--------------------------HhhH
Confidence            77787765322 2222333  46777789999999999984 78988888                          8999


Q ss_pred             HHHHHHHHHHHHhccc--CCceeehHHHHHHHHHHHHhhcccCCCcc-ccc----hHHHHHHHHHHHHHhhhhhhccccc
Q 009043          199 AMVASVEIMLKRWRHS--EGKEIEVSQEFKLLTSEIISRTAFGSSYL-EGE----SIFNKLTNMSFLASRNAYKIKIPLI  271 (546)
Q Consensus       199 ~~~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~vi~~~~fG~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~p~~  271 (546)
                      .+.++++.+++.+.+.  +++++|+.+.+..++.+++++++||.++. ...    +....+...............+|.+
T Consensus       147 ~i~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~vi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l  226 (504)
T PLN00110        147 VRTVELGHMLRAMLELSQRGEPVVVPEMLTFSMANMIGQVILSRRVFETKGSESNEFKDMVVELMTTAGYFNIGDFIPSI  226 (504)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcEeHHHHHHHHHHHHHHHHHhCCcccccCchhHHHHHHHHHHHHHHhccccHHHHcchH
Confidence            9999998888888653  46789999999999999999999998762 111    1222222222211111112344544


Q ss_pred             cccccCC-chhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 009043          272 GDFVKTS-DDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAG  350 (546)
Q Consensus       272 ~~~l~~~-~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag  350 (546)
                       .|++.. ..+...+..+.+.+++.+.++++.+.....   ....|+++.+++...+. .+..++++++.+++..+++||
T Consensus       227 -~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~d~l~~ll~~~~~~-~~~~l~~~~i~~~~~~~~~Ag  301 (504)
T PLN00110        227 -AWMDIQGIERGMKHLHKKFDKLLTRMIEEHTASAHER---KGNPDFLDVVMANQENS-TGEKLTLTNIKALLLNLFTAG  301 (504)
T ss_pred             -hhhCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccCCChhhHHhhccccc-CCCCCCHHHHHHHHHhhhccc
Confidence             333321 224455567778888888887776543211   13469999999754322 234699999999999999999


Q ss_pred             cccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCC-CCCCccccCCChhHHHHHHhhhcCCCCCCC-cceeeccccccCC
Q 009043          351 HETTTKLLTWTILLLATHTDWQEKLREEVLELFGQ-KNPAPDGIGKLKTMSMVINESLRLYPPAVN-ISRNVEREVRLGK  428 (546)
Q Consensus       351 ~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~-~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~-~~r~~~~d~~l~g  428 (546)
                      +|||+++++|++++|++||++|+|+++|++++.++ +.++++++++||||+|||+||||++|+++. ++|.+.+|++++|
T Consensus       302 ~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g  381 (504)
T PLN00110        302 TDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRNRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNG  381 (504)
T ss_pred             ccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCC
Confidence            99999999999999999999999999999999884 668999999999999999999999999998 5999999999999


Q ss_pred             eeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccC--CCCCcccccCCCCCCCcchHHHHHHHHHHHHHHH
Q 009043          429 YILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASN--NTPAAFLPFSSGPRICVGLNFAATEAKIALSMIL  506 (546)
Q Consensus       429 ~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~--~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll  506 (546)
                      |.|||||.|+++.+++||||++| +||++|+||||++.+....+  .+...++|||.|+|.|+|++||+.|+++++++|+
T Consensus       382 ~~Ip~Gt~V~~~~~~~h~d~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll  460 (504)
T PLN00110        382 YYIPKNTRLSVNIWAIGRDPDVW-ENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLV  460 (504)
T ss_pred             EEECCCCEEEEeHHHhcCChhhc-CCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 99999999999965322110  1235799999999999999999999999999999


Q ss_pred             hhceEEeCCCCccC--CceeEeeecCCCCeEEEEecc
Q 009043          507 QRYRFNLSPSYVHS--PVLVVTLRPQHGLQVIFQPLS  541 (546)
Q Consensus       507 ~~f~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~  541 (546)
                      ++|+|++.++.+..  .....++.|.++++|++++|+
T Consensus       461 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  497 (504)
T PLN00110        461 HSFDWKLPDGVELNMDEAFGLALQKAVPLSAMVTPRL  497 (504)
T ss_pred             HhceeecCCCCccCcccccccccccCCCceEeeccCC
Confidence            99999987764332  234567789999999999995


No 14 
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00  E-value=1.9e-69  Score=568.49  Aligned_cols=447  Identities=22%  Similarity=0.365  Sum_probs=347.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHh---CCcEEEcccCccEEEeCCHHHHHHHHh
Q 009043           44 GIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQY---GMNFLTWYGSRAQLVITQPELIKEILS  120 (546)
Q Consensus        44 ~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ky---G~v~~~~~g~~~~vvv~~p~~~~~il~  120 (546)
                      ++|||+++|++||++.+...                   +..+.+|.++|   |++|++++|+.++|+++||+.+++++.
T Consensus        31 ~~pgp~~~p~~G~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~   91 (516)
T PLN03195         31 NRKGPKSWPIIGAALEQLKN-------------------YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLK   91 (516)
T ss_pred             ccCCCCCCCeecchHHHHhc-------------------cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHh
Confidence            68999999999998776531                   22345666666   899999999999999999999999998


Q ss_pred             cCCCCCCCCCch-hHHHHhhcCCccccCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHH
Q 009043          121 NSDGTYPKVQAP-GFLRKILGDGLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPA  199 (546)
Q Consensus       121 ~~~~~~~~~~~~-~~~~~~~g~~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (546)
                      ++...|.++... .....++|+++++.+|+.|+++|+++++.|+.++++                          .+.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~g~~w~~~Rr~l~~~fs~~~l~--------------------------~~~~~  145 (516)
T PLN03195         92 TNFANYPKGEVYHSYMEVLLGDGIFNVDGELWRKQRKTASFEFASKNLR--------------------------DFSTV  145 (516)
T ss_pred             hCccccCCcHhHHHHHHHHhcCeeeccCcHHHHHHHHhcchhhhHHHHH--------------------------HHHHH
Confidence            765567666432 234455688898889999999999999999999988                          77776


Q ss_pred             H-HHHHHHHHHHhccc--CCceeehHHHHHHHHHHHHhhcccCCCccccc------hHHHHHHHHHHHHHhhhhhhcccc
Q 009043          200 M-VASVEIMLKRWRHS--EGKEIEVSQEFKLLTSEIISRTAFGSSYLEGE------SIFNKLTNMSFLASRNAYKIKIPL  270 (546)
Q Consensus       200 ~-~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~p~  270 (546)
                      + .+.++.+.+.+...  .+.++|+.+.+..++++++++++||.++...+      +....+........   .....|.
T Consensus       146 ~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~  222 (516)
T PLN03195        146 VFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKVGFGVEIGTLSPSLPENPFAQAFDTANIIVT---LRFIDPL  222 (516)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHHHhCCCccccccCCCccHHHHHHHHHHHHHH---HHHhcch
Confidence            5 56666777666532  46689999999999999999999999875321      22222222111110   1111121


Q ss_pred             c--cccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHH
Q 009043          271 I--GDFVKTSDDVEGDKLEQGIRDSIIKMMKTREEKALKGE--SEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTF  346 (546)
Q Consensus       271 ~--~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~--~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~  346 (546)
                      +  ..+++....+...+..+.+.+++.+.+++++++..++.  ......|+++.+++...+.  +..++++++.+++..+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~l  300 (516)
T PLN03195        223 WKLKKFLNIGSEALLSKSIKVVDDFTYSVIRRRKAEMDEARKSGKKVKHDILSRFIELGEDP--DSNFTDKSLRDIVLNF  300 (516)
T ss_pred             hhHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHhccCCC--CCCCCHHHHHHHHHHH
Confidence            1  11222222234456777888888888888776543211  1113569999999754322  3468999999999999


Q ss_pred             HHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCC---------------------CCCCccccCCChhHHHHHHh
Q 009043          347 YIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQ---------------------KNPAPDGIGKLKTMSMVINE  405 (546)
Q Consensus       347 ~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~---------------------~~~~~~~~~~lp~l~a~i~E  405 (546)
                      ++||+|||+++++|++++|++||++|+|+|+||+++.++                     ..++++++.+||||+|||+|
T Consensus       301 l~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~E  380 (516)
T PLN03195        301 VIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITE  380 (516)
T ss_pred             HHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccccccccccchhhhhcccccCCCCHHHHhcCHHHHHHHHH
Confidence            999999999999999999999999999999999988642                     34789999999999999999


Q ss_pred             hhcCCCCCCCcceeecccccc-CCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCC
Q 009043          406 SLRLYPPAVNISRNVEREVRL-GKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSG  484 (546)
Q Consensus       406 tlRl~p~~~~~~r~~~~d~~l-~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G  484 (546)
                      |||++|++|..+|.+.+|.++ +|+.|||||.|.++.+++||||++||+||++|+||||++.+.... ..+..++|||.|
T Consensus       381 tLRl~p~~p~~~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~-~~~~~~~pFG~G  459 (516)
T PLN03195        381 TLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQN-ASPFKFTAFQAG  459 (516)
T ss_pred             HhhcCCCCcchhhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCC-CCCceEeccCCC
Confidence            999999999997778887666 999999999999999999999999999999999999996422111 245679999999


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHhhceEEeCCCCccCCceeEeeecCCCCeEEEEecc
Q 009043          485 PRICVGLNFAATEAKIALSMILQRYRFNLSPSYVHSPVLVVTLRPQHGLQVIFQPLS  541 (546)
Q Consensus       485 ~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  541 (546)
                      +|+|+|++||++|++++++.|+++|++++.++.+.......++.|.+|++|++++|+
T Consensus       460 ~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~  516 (516)
T PLN03195        460 PRICLGKDSAYLQMKMALALLCRFFKFQLVPGHPVKYRMMTILSMANGLKVTVSRRS  516 (516)
T ss_pred             CCcCcCHHHHHHHHHHHHHHHHHhceeEecCCCcceeeeeeEEecCCCEEEEEEeCC
Confidence            999999999999999999999999999987654433333456789999999999875


No 15 
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00  E-value=1.8e-69  Score=567.68  Aligned_cols=460  Identities=22%  Similarity=0.334  Sum_probs=349.0

Q ss_pred             HHHHHhhchhhHHHHHhhcCCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCc
Q 009043           25 LFNKLWWIPNRTQAVMGSQGIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSR  104 (546)
Q Consensus        25 ~~~~~~~~p~~~~~~~~~~~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~  104 (546)
                      +++++.++|..        .+|||+++|++|+++.+..                 +..+..+.+|+++||+||++++|+.
T Consensus        20 ~~~~~~~~~~~--------~pPgp~~~p~~g~l~~~~~-----------------~~~~~~~~~~~~~yG~v~~i~~g~~   74 (503)
T PLN02394         20 LVSKLRGKKLK--------LPPGPAAVPIFGNWLQVGD-----------------DLNHRNLAEMAKKYGDVFLLRMGQR   74 (503)
T ss_pred             HHHHHhcCcCC--------CCcCCCCCCeeeeHHhcCC-----------------CchhHHHHHHHHHhCCeEEEEcCCe
Confidence            35666666766        8999999999999977632                 1135688899999999999999999


Q ss_pred             cEEEeCCHHHHHHHHhcCCCCCCCCCchhHHHHhhcC---CccccCCchHHHhhhhcc-ccCChhhhhhhcchhhhhhhh
Q 009043          105 AQLVITQPELIKEILSNSDGTYPKVQAPGFLRKILGD---GLVTAGGENWHRQRKLAT-LAFYAESLRVTKSNCLMFKLK  180 (546)
Q Consensus       105 ~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~~~g~---~l~~~~g~~w~~~R~~~~-~~f~~~~l~~~~~~~~~~~~~  180 (546)
                      ++|+|+||+.+++++.++...|.+++.......+.|.   +++..+|+.|+++|+.+. +.|+.++++            
T Consensus        75 ~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~------------  142 (503)
T PLN02394         75 NLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQ------------  142 (503)
T ss_pred             eEEEeCCHHHHHHHHHhCCccccCCCCcchHhHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHH------------
Confidence            9999999999999998777667655433333444343   367778999999999996 889988888            


Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHHHhccc---CCceeehHHHHHHHHHHHHhhcccCCCccccch-HHHHHHHHH
Q 009043          181 SVIVMLFNVFAPMQDMIPAMVASVEIMLKRWRHS---EGKEIEVSQEFKLLTSEIISRTAFGSSYLEGES-IFNKLTNMS  256 (546)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~-~~~~~~~~~  256 (546)
                                    .+.+.++++++++++.+...   .++.+++.+.+..++++++++++||.++...++ ....+....
T Consensus       143 --------------~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~  208 (503)
T PLN02394        143 --------------QYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNIMYRMMFDRRFESEDDPLFLKLKALN  208 (503)
T ss_pred             --------------HhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHHHHHHHhCCCcccccchhHHHHHHHH
Confidence                          88999999999999998653   244689999999999999999999998864322 222222221


Q ss_pred             HHHHhhh------hhhccccccccccCCchhhhhHHHHHHHHHH-HHHHHHHHHHHhcCC-CCCCCCcHHHHHHHHcCCC
Q 009043          257 FLASRNA------YKIKIPLIGDFVKTSDDVEGDKLEQGIRDSI-IKMMKTREEKALKGE-SEGYGNDYFGLLLKAYHDP  328 (546)
Q Consensus       257 ~~~~~~~------~~~~~p~~~~~l~~~~~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~-~~~~~~d~l~~ll~~~~~~  328 (546)
                      .......      ....+|.+..++. ...+............+ ...++++++...... ......|+++.+++...+ 
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~-  286 (503)
T PLN02394        209 GERSRLAQSFEYNYGDFIPILRPFLR-GYLKICQDVKERRLALFKDYFVDERKKLMSAKGMDKEGLKCAIDHILEAQKK-  286 (503)
T ss_pred             HHHHHHhcccccchhhhchHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHhcccc-
Confidence            1111100      1112232211111 00111112222222223 334555544322110 111347899999987543 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCC-CCCCccccCCChhHHHHHHhhh
Q 009043          329 DMTKRISLDVLIDECKTFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQ-KNPAPDGIGKLKTMSMVINESL  407 (546)
Q Consensus       329 ~~~~~l~~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~-~~~~~~~~~~lp~l~a~i~Etl  407 (546)
                         +.++++++..++.++++||+|||+++++|++++|++||++|+|+|+||+++.+. ..++.+++++||||+|||+|||
T Consensus       287 ---~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~l~~lpyl~avi~Etl  363 (503)
T PLN02394        287 ---GEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPGNQVTEPDTHKLPYLQAVVKETL  363 (503)
T ss_pred             ---CCCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCHhHHhhCHHHHHHHHHHH
Confidence               258999999999999999999999999999999999999999999999999984 5678999999999999999999


Q ss_pred             cCCCCCCCc-ceeeccccccCCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccc-cCCCCCcccccCCCC
Q 009043          408 RLYPPAVNI-SRNVEREVRLGKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKA-SNNTPAAFLPFSSGP  485 (546)
Q Consensus       408 Rl~p~~~~~-~r~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~-~~~~~~~~~~Fg~G~  485 (546)
                      |++|++|.. +|.+.+|++++||.||+||.|.++.+++||||++| +||++|+||||++.+... .......++|||.|+
T Consensus       364 Rl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~-~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~  442 (503)
T PLN02394        364 RLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELW-KNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGR  442 (503)
T ss_pred             hcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccC-CCccccCccccCCCCCcccccCCCCceeCCCCCC
Confidence            999999987 89999999999999999999999999999999999 999999999999753221 112356799999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHhhceEEeCCCCc-cCC--ce-eEeeecCCCCeEEEEecc
Q 009043          486 RICVGLNFAATEAKIALSMILQRYRFNLSPSYV-HSP--VL-VVTLRPQHGLQVIFQPLS  541 (546)
Q Consensus       486 r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~-~~~--~~-~~~~~~~~~~~v~~~~~~  541 (546)
                      |+|+|++||++|+++++|+|+++|+|++.++.+ ...  .. ++.+.....++|++++|+
T Consensus       443 R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  502 (503)
T PLN02394        443 RSCPGIILALPILGIVLGRLVQNFELLPPPGQSKIDVSEKGGQFSLHIAKHSTVVFKPRS  502 (503)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCCcCccccccCceeeccCCCceEEeecCC
Confidence            999999999999999999999999999877642 222  23 366655668999999996


No 16 
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00  E-value=7.6e-70  Score=571.64  Aligned_cols=478  Identities=18%  Similarity=0.278  Sum_probs=368.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhchhhHHHHHhhcCCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHH
Q 009043           12 SCFCLVFFLFIIRLFNKLWWIPNRTQAVMGSQGIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTK   91 (546)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (546)
                      ++.++++++++++.+.+....+.+        .+|||+++|++||+..+..                  +++.++.++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~--------~ppgp~~~pl~G~~~~~~~------------------~~~~~~~~~~~   62 (514)
T PLN03112          9 LFSVLIFNVLIWRWLNASMRKSLR--------LPPGPPRWPIVGNLLQLGP------------------LPHRDLASLCK   62 (514)
T ss_pred             HHHHHHHHHHHHHHccccccCCCC--------CccCCCCCCeeeeHHhcCC------------------chHHHHHHHHH
Confidence            333444455555555544444443        7899999999999987631                  34678899999


Q ss_pred             HhCCcEEEcccCccEEEeCCHHHHHHHHhcCCCCCCCCCchh-HHHHhhc--CCccccCCchHHHhhhhcc-ccCChhhh
Q 009043           92 QYGMNFLTWYGSRAQLVITQPELIKEILSNSDGTYPKVQAPG-FLRKILG--DGLVTAGGENWHRQRKLAT-LAFYAESL  167 (546)
Q Consensus        92 kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~-~~~~~~g--~~l~~~~g~~w~~~R~~~~-~~f~~~~l  167 (546)
                      +||++|++++|+.++|+++||+.+++++.++...|++++... .....+|  .+++..+|+.|+++|+++. +.|+.+++
T Consensus        63 kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~~~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l  142 (514)
T PLN03112         63 KYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLAAVHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRL  142 (514)
T ss_pred             HhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCcccceeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHH
Confidence            999999999999999999999999999987777787765321 1222344  3356678999999999965 68999999


Q ss_pred             hhhcchhhhhhhhHHHHHhhhccccccccHHHHHHHHHHHHHHhccc--CCceeehHHHHHHHHHHHHhhcccCCCcccc
Q 009043          168 RVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPAMVASVEIMLKRWRHS--EGKEIEVSQEFKLLTSEIISRTAFGSSYLEG  245 (546)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~  245 (546)
                      +                          .+.+.+.++++.+++.+.+.  .++++|+.+.+..++++++++++||.++...
T Consensus       143 ~--------------------------~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~  196 (514)
T PLN03112        143 E--------------------------SFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLGAFSMNNVTRMLLGKQYFGA  196 (514)
T ss_pred             H--------------------------HhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHHHHHHHHHHHHHcCCccccc
Confidence            8                          89999999999999876542  4668999999999999999999999986321


Q ss_pred             c----hHHHHHHHHHHHHHh----hhhhhcccccccccc-CCchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 009043          246 E----SIFNKLTNMSFLASR----NAYKIKIPLIGDFVK-TSDDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGND  316 (546)
Q Consensus       246 ~----~~~~~~~~~~~~~~~----~~~~~~~p~~~~~l~-~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d  316 (546)
                      .    +....+......+..    .....++|.+ .+++ ....++..+..+.+.+++.+.++++++............|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d  275 (514)
T PLN03112        197 ESAGPKEAMEFMHITHELFRLLGVIYLGDYLPAW-RWLDPYGCEKKMREVEKRVDEFHDKIIDEHRRARSGKLPGGKDMD  275 (514)
T ss_pred             cccchHHHHHHHHHHHHHHHHcCCCcHHHhChHH-HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccch
Confidence            1    111222222221111    1122334544 3332 2223556667788888888888887765332211124569


Q ss_pred             HHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCC-CCCCccccCC
Q 009043          317 YFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQ-KNPAPDGIGK  395 (546)
Q Consensus       317 ~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~-~~~~~~~~~~  395 (546)
                      +++.+++...++ ....++++++.+++..+++||+|||+++++|++++|++||++|+|+|+||++++++ +.++.+++++
T Consensus       276 ~l~~ll~~~~~~-~~~~l~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~t~~~l~~  354 (514)
T PLN03112        276 FVDVLLSLPGEN-GKEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVGRNRMVQESDLVH  354 (514)
T ss_pred             HHHHHHHhhccc-cccCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhChHHHHHHHHHHHHhcCCCCcCChhhhcc
Confidence            999999864332 22358999999999999999999999999999999999999999999999999884 5689999999


Q ss_pred             ChhHHHHHHhhhcCCCCCCCc-ceeeccccccCCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCccccc---
Q 009043          396 LKTMSMVINESLRLYPPAVNI-SRNVEREVRLGKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKAS---  471 (546)
Q Consensus       396 lp~l~a~i~EtlRl~p~~~~~-~r~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~---  471 (546)
                      |||++|||+||+|++|+++.. +|.+.+|++++||.|||||.|.++.+++||||++| +||++|+||||.++++...   
T Consensus       355 L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~-~dP~~F~PeRf~~~~~~~~~~~  433 (514)
T PLN03112        355 LNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIW-DDVEEFRPERHWPAEGSRVEIS  433 (514)
T ss_pred             CcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccC-CChhhcCCcccCCCCCCccccc
Confidence            999999999999999999975 89999999999999999999999999999999999 9999999999876422111   


Q ss_pred             CCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHhhceEEeCCCCccC-----CceeEeeecCCCCeEEEEeccccc
Q 009043          472 NNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQRYRFNLSPSYVHS-----PVLVVTLRPQHGLQVIFQPLSVNQ  544 (546)
Q Consensus       472 ~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~  544 (546)
                      ...+..++|||.|+|.|+|++||++|+++++++||++|+|++.++....     ....+++.+.+++.|++++|...+
T Consensus       434 ~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  511 (514)
T PLN03112        434 HGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPRLAPH  511 (514)
T ss_pred             cCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecCCccc
Confidence            0134579999999999999999999999999999999999987542111     122455567789999999997654


No 17 
>PLN02966 cytochrome P450 83A1
Probab=100.00  E-value=1.6e-69  Score=566.60  Aligned_cols=452  Identities=19%  Similarity=0.326  Sum_probs=346.4

Q ss_pred             CCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcCC
Q 009043           44 GIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNSD  123 (546)
Q Consensus        44 ~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~  123 (546)
                      .||||+++|++||+..+..                 .+++.++.+|+++||++|++++|+.++|+++||+.+++++.++.
T Consensus        30 ~ppgp~~~p~~G~l~~l~~-----------------~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~   92 (502)
T PLN02966         30 LPPGPSPLPVIGNLLQLQK-----------------LNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQD   92 (502)
T ss_pred             CCcCCCCCCeeccHHhcCC-----------------CChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCc
Confidence            6899999999999987632                 13577899999999999999999999999999999999998877


Q ss_pred             CCCCCCCchhHHHHh-hcC-Cc-cccCCchHHHhhhh-ccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHH
Q 009043          124 GTYPKVQAPGFLRKI-LGD-GL-VTAGGENWHRQRKL-ATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPA  199 (546)
Q Consensus       124 ~~~~~~~~~~~~~~~-~g~-~l-~~~~g~~w~~~R~~-~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (546)
                      ..|.+.+........ .|. ++ +..+|+.|+.+|+. +.+.|+.++++                          .+.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~--------------------------~~~~~  146 (502)
T PLN02966         93 VNFADRPPHRGHEFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVA--------------------------TFKHV  146 (502)
T ss_pred             ccccCCCCCccceeeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHH--------------------------HHHHH
Confidence            667654422111111 222 22 44569999999999 77899999998                          89999


Q ss_pred             HHHHHHHHHHHhccc--CCceeehHHHHHHHHHHHHhhcccCCCccccchHHHHHHHHHHHH----Hhhhhhhccccccc
Q 009043          200 MVASVEIMLKRWRHS--EGKEIEVSQEFKLLTSEIISRTAFGSSYLEGESIFNKLTNMSFLA----SRNAYKIKIPLIGD  273 (546)
Q Consensus       200 ~~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~  273 (546)
                      +.+.++++++.|...  .++++|+.+.+..+++++++.++||.+++..++....+.+.....    .......++|.+ .
T Consensus       147 i~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~  225 (502)
T PLN02966        147 REEEARRMMDKINKAADKSEVVDISELMLTFTNSVVCRQAFGKKYNEDGEEMKRFIKILYGTQSVLGKIFFSDFFPYC-G  225 (502)
T ss_pred             HHHHHHHHHHHHHHhccCCCceeHHHHHHHHHHHHHHHHHhCCccCccchHHHHHHHHHHHHHHHhCcccHHHhhchh-h
Confidence            999999999999653  456899999999999999999999998864333222232222111    111122334432 2


Q ss_pred             cccC-Cc-hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 009043          274 FVKT-SD-DVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGH  351 (546)
Q Consensus       274 ~l~~-~~-~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~  351 (546)
                      +++. .. ........+...+++.+.++++......+   ....|+++.+++...++..+..++++++.+++..+++||+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~  302 (502)
T PLN02966        226 FLDDLSGLTAYMKECFERQDTYIQEVVNETLDPKRVK---PETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGT  302 (502)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cccccHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhccc
Confidence            1211 11 12223345566666777776654321111   1346899999976543211345899999999999999999


Q ss_pred             ccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCC---CCCCccccCCChhHHHHHHhhhcCCCCCCCc-ceeeccccccC
Q 009043          352 ETTTKLLTWTILLLATHTDWQEKLREEVLELFGQ---KNPAPDGIGKLKTMSMVINESLRLYPPAVNI-SRNVEREVRLG  427 (546)
Q Consensus       352 dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~---~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~-~r~~~~d~~l~  427 (546)
                      |||+++++|++++|++||++|+|+++||+++.++   ..++++++++||||+|||+|+||++|++++. +|.+.+|++++
T Consensus       303 eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~  382 (502)
T PLN02966        303 DTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIA  382 (502)
T ss_pred             cchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccCCCcCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEc
Confidence            9999999999999999999999999999999863   3579999999999999999999999999985 89999999999


Q ss_pred             CeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHh
Q 009043          428 KYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQ  507 (546)
Q Consensus       428 g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~  507 (546)
                      ||.|||||.|.+++|++||||++|||||++|+||||++++.... ..+..++|||.|+|+|+|++||++|+++++|.|++
T Consensus       383 g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~-~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~  461 (502)
T PLN02966        383 GYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFK-GTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLL  461 (502)
T ss_pred             cEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcC-CCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999997533211 24568999999999999999999999999999999


Q ss_pred             hceEEeCCCCccCCc----eeEeeecCCCCeEEEEeccccc
Q 009043          508 RYRFNLSPSYVHSPV----LVVTLRPQHGLQVIFQPLSVNQ  544 (546)
Q Consensus       508 ~f~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~  544 (546)
                      +|+|++.++......    ..+.+.++.+ +++++++..|+
T Consensus       462 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  501 (502)
T PLN02966        462 NFNFKLPNGMKPDDINMDVMTGLAMHKSQ-HLKLVPEKVNK  501 (502)
T ss_pred             hceeeCCCCCCcccCCcccccCeeeccCC-CeEEEEEeCCC
Confidence            999998876433211    2234443434 66777777664


No 18 
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00  E-value=1.1e-68  Score=565.90  Aligned_cols=428  Identities=26%  Similarity=0.437  Sum_probs=341.3

Q ss_pred             cchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcCCCCCCCCCchhHHHHhhcCCccccCCchHHHhhhhcc
Q 009043           80 PRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNSDGTYPKVQAPGFLRKILGDGLVTAGGENWHRQRKLAT  159 (546)
Q Consensus        80 ~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~~~g~~l~~~~g~~w~~~R~~~~  159 (546)
                      +.++..+.+|+++||+||++++|+.++|+|+||+.+++++.++...|.++.....+....|.++++.+|+.|+.+|+.+.
T Consensus       151 g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~g~~l~~~dge~wr~rRr~l~  230 (633)
T PLN02738        151 EAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIV  230 (633)
T ss_pred             chHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhccCCceecCCcHHHHHHHHhcc
Confidence            45788899999999999999999999999999999999998776667776543444445678888899999999999999


Q ss_pred             ccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHHHHHHHHHHHHHhccc--CCceeehHHHHHHHHHHHHhhcc
Q 009043          160 LAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPAMVASVEIMLKRWRHS--EGKEIEVSQEFKLLTSEIISRTA  237 (546)
Q Consensus       160 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~vi~~~~  237 (546)
                      +.|+..++.                          .+.+.+.+.++.+++.+...  .+.++|+...+..+++|+|+.++
T Consensus       231 p~Fs~~~v~--------------------------~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~  284 (633)
T PLN02738        231 PALHQKYVA--------------------------AMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAV  284 (633)
T ss_pred             HhhhHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHH
Confidence            999999988                          89999999999999999753  46789999999999999999999


Q ss_pred             cCCCccc---cchHHHHHHHHHHHHHhhhhhh----ccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhcCC-
Q 009043          238 FGSSYLE---GESIFNKLTNMSFLASRNAYKI----KIPLIGDFVKTSDDVEGDKLEQGIRDSIIKMMKTREEKALKGE-  309 (546)
Q Consensus       238 fG~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~-  309 (546)
                      ||.+++.   +++....+..............    .+|.+ ..++.. .++..+..+.+.+.+.++++.+++...+.. 
T Consensus       285 FG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~l~~~-~~~~~~~~~~l~~~~~~li~~~~~~~~~~~~  362 (633)
T PLN02738        285 FNYDFDSLSNDTGIVEAVYTVLREAEDRSVSPIPVWEIPIW-KDISPR-QRKVAEALKLINDTLDDLIAICKRMVEEEEL  362 (633)
T ss_pred             hCCCccccccchHHHHHHHHHHHHHHHHhhcchhhhhhhHH-hhhchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9998763   2233333333322221111111    11222 122211 233444555555666666554433211110 


Q ss_pred             ------CCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHh
Q 009043          310 ------SEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELF  383 (546)
Q Consensus       310 ------~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~  383 (546)
                            ......|+++.+++..      ..++++++.+++..+++||+|||+++++|++++|++||++|+|+|+||++++
T Consensus       363 ~~~~~~~~~~~~dil~~Ll~~~------~~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~  436 (633)
T PLN02738        363 QFHEEYMNERDPSILHFLLASG------DDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVL  436 (633)
T ss_pred             cchhcccccccchHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence                  0113468999998752      2588999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCCChhHHHHHHhhhcCCCCCCCcceeeccccccCCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCC
Q 009043          384 GQKNPAPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERF  463 (546)
Q Consensus       384 ~~~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~~r~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rf  463 (546)
                      ++..++++++++||||+|||+|+|||+|+++..+|++.+|++++||.|||||.|.++.|.+||||++| |||++|+||||
T Consensus       437 ~~~~~t~edL~kLPYL~AVIkEtLRL~p~~p~~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~if-pdP~~F~PERW  515 (633)
T PLN02738        437 GDRFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHW-DDAEKFNPERW  515 (633)
T ss_pred             CCCCCCHHHHccCHHHHHHHHHHHhcCCCccccceeeccCceECCEEECCCCEEEecHHHHhCCcccc-CCccccCcccC
Confidence            87778999999999999999999999999999889999999999999999999999999999999999 99999999999


Q ss_pred             CCCccc-ccCCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHhhceEEeCCCCcc-CCceeEeeecCCCCeEEEEecc
Q 009043          464 ADGVAK-ASNNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQRYRFNLSPSYVH-SPVLVVTLRPQHGLQVIFQPLS  541 (546)
Q Consensus       464 l~~~~~-~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~  541 (546)
                      ++.+.. ........++|||.|+|.|+|++||++|++++++.|+++|+|++.++.++ .....++++|.++++|++++|+
T Consensus       516 l~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~~~~~~~~~~~~~p~~~l~v~l~~R~  595 (633)
T PLN02738        516 PLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGAPPVKMTTGATIHTTEGLKMTVTRRT  595 (633)
T ss_pred             CCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCCCCcccccceEEeeCCCcEEEEEECC
Confidence            853211 11134568999999999999999999999999999999999998765332 2223578889999999999996


Q ss_pred             c
Q 009043          542 V  542 (546)
Q Consensus       542 ~  542 (546)
                      .
T Consensus       596 ~  596 (633)
T PLN02738        596 K  596 (633)
T ss_pred             C
Confidence            4


No 19 
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00  E-value=8.9e-69  Score=555.39  Aligned_cols=425  Identities=19%  Similarity=0.263  Sum_probs=343.4

Q ss_pred             CCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcCC
Q 009043           44 GIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNSD  123 (546)
Q Consensus        44 ~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~  123 (546)
                      .+|||+++|++||++.+.+                  +...++.+++++||++|++++|+.++++++||+.+++++.++.
T Consensus        32 ~ppgp~~~P~~G~~~~~~~------------------~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~   93 (463)
T PLN02774         32 LPPGTMGWPLFGETTEFLK------------------QGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEG   93 (463)
T ss_pred             CCCCCCCCCchhhHHHHHH------------------hhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCC
Confidence            5689999999999988753                  2255788999999999999999999999999999999998877


Q ss_pred             CCCCCCCchhHHHHhhc-CCccccCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccc-cHHHHH
Q 009043          124 GTYPKVQAPGFLRKILG-DGLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQD-MIPAMV  201 (546)
Q Consensus       124 ~~~~~~~~~~~~~~~~g-~~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  201 (546)
                      ..|.++.... ...++| .++++.+|+.|+++|+.+++.|++..++                          . +.+.+.
T Consensus        94 ~~~~~~~~~~-~~~~lg~~~~~~~~g~~w~~~R~~l~~~~~~~~~~--------------------------~~~~~~~~  146 (463)
T PLN02774         94 KGLVPGYPQS-MLDILGTCNIAAVHGSTHRYMRGSLLSLISPTMIR--------------------------DHLLPKID  146 (463)
T ss_pred             CeEEecCCHH-HHHHhCccchhhcCCHHHHHHHHHHHHhcCHHHHH--------------------------HHHHHHHH
Confidence            6664432222 334555 4678889999999999999999998877                          4 678888


Q ss_pred             HHHHHHHHHhcccCCceeehHHHHHHHHHHHHhhcccCCCccccchHHHHHHHHHHHHHhhhhhhccccccccccCCchh
Q 009043          202 ASVEIMLKRWRHSEGKEIEVSQEFKLLTSEIISRTAFGSSYLEGESIFNKLTNMSFLASRNAYKIKIPLIGDFVKTSDDV  281 (546)
Q Consensus       202 ~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  281 (546)
                      +.++++++.|..  ++++|+.+.+..++.++++.++||......   ...+..........  ...+|   .++|....+
T Consensus       147 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~--~~~~~---~~lp~~~~~  216 (463)
T PLN02774        147 EFMRSHLSGWDG--LKTIDIQEKTKEMALLSALKQIAGTLSKPI---SEEFKTEFFKLVLG--TLSLP---IDLPGTNYR  216 (463)
T ss_pred             HHHHHHHHhhCC--CCCEEeeHHHHHHHHHHHHHHHcCCCChHH---HHHHHHHHHHHhcc--cccCC---cCCCChhhh
Confidence            888888888864  467999999999999999999999764321   11121111111111  11122   234433345


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhhcccHHHHHHHH
Q 009043          282 EGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHETTTKLLTWT  361 (546)
Q Consensus       282 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~dtt~~~l~~~  361 (546)
                      +..++.+.+.+++.+.++++++..   .   ..+|+++.+++...+   +..++++++.+++.++++||+|||+++++|+
T Consensus       217 ~~~~~~~~~~~~~~~~i~~r~~~~---~---~~~d~l~~ll~~~~~---~~~~s~~ei~~~~~~ll~Ag~dTt~~~l~w~  287 (463)
T PLN02774        217 SGVQARKNIVRMLRQLIQERRASG---E---THTDMLGYLMRKEGN---RYKLTDEEIIDQIITILYSGYETVSTTSMMA  287 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC---C---CcccHHHHHHhCccC---CCCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            666778888888888888876431   1   457999999874322   2358999999999999999999999999999


Q ss_pred             HHHHccChHHHHHHHHHHHHHhCC----CCCCccccCCChhHHHHHHhhhcCCCCCCCcceeeccccccCCeeeCCCCEE
Q 009043          362 ILLLATHTDWQEKLREEVLELFGQ----KNPAPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGKYILPANMEL  437 (546)
Q Consensus       362 l~~L~~~P~~~~~lr~Ei~~~~~~----~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~~r~~~~d~~l~g~~ip~G~~v  437 (546)
                      +++|++||++|+|+|+|++++.+.    ..+++++++++|||+|||+|+||++|+++.++|.+.+|++++||.||||+.|
T Consensus       288 l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a~ikE~lRl~P~v~~~~R~~~~d~~l~g~~IpkGt~v  367 (463)
T PLN02774        288 VKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRI  367 (463)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHHHHHHHHhcCCCCCCcccccCCCeeECCEEECCCCEE
Confidence            999999999999999999999862    4578999999999999999999999999988999999999999999999999


Q ss_pred             EecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHhhceEEeCCCC
Q 009043          438 VIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQRYRFNLSPSY  517 (546)
Q Consensus       438 ~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~  517 (546)
                      +++.+++||||++| +||++|+||||++.+.    .....++|||+|+|.|||+++|++|++++++.|+++|+|++.++.
T Consensus       368 ~~~~~~~~rdp~~~-~dP~~F~PeRfl~~~~----~~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~  442 (463)
T PLN02774        368 YVYTREINYDPFLY-PDPMTFNPWRWLDKSL----ESHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGD  442 (463)
T ss_pred             EEehHHhcCCcccC-CChhccCchhcCCCCc----CCCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCC
Confidence            99999999999999 9999999999997531    112369999999999999999999999999999999999997664


Q ss_pred             ccCCceeEeeecCCCCeEEEEe
Q 009043          518 VHSPVLVVTLRPQHGLQVIFQP  539 (546)
Q Consensus       518 ~~~~~~~~~~~~~~~~~v~~~~  539 (546)
                      ...+.  .+..|++|++|++++
T Consensus       443 ~~~~~--~~~~p~~g~~~~~~~  462 (463)
T PLN02774        443 KLMKF--PRVEAPNGLHIRVSP  462 (463)
T ss_pred             ccccC--CCCCCCCCceEEeee
Confidence            33332  345689999999984


No 20 
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00  E-value=9.8e-69  Score=554.67  Aligned_cols=422  Identities=22%  Similarity=0.339  Sum_probs=347.2

Q ss_pred             CCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcCC
Q 009043           44 GIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNSD  123 (546)
Q Consensus        44 ~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~  123 (546)
                      .||||+++|++||+..+..                 ++++.++.+++++||++|++++|+.++|+++||+.+++++.++.
T Consensus        36 ~Ppgp~~~P~iG~~~~~~~-----------------~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~   98 (463)
T PLN02196         36 LPPGTMGWPYVGETFQLYS-----------------QDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKS   98 (463)
T ss_pred             CCCCCCCCCccchHHHHHh-----------------cCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCC
Confidence            6788888999999877643                 24577899999999999999999999999999999999998877


Q ss_pred             CCCCCCCchhHHHHhhc-CCccccCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHHHHH
Q 009043          124 GTYPKVQAPGFLRKILG-DGLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPAMVA  202 (546)
Q Consensus       124 ~~~~~~~~~~~~~~~~g-~~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (546)
                      ..| ++.........+| .++++.+|+.|+++|+++.+.|++++++                          .+.+.+.+
T Consensus        99 ~~~-~~~~~~~~~~~~g~~~l~~~~g~~w~~~Rk~l~~~f~~~~l~--------------------------~~~~~i~~  151 (463)
T PLN02196         99 HLF-KPTFPASKERMLGKQAIFFHQGDYHAKLRKLVLRAFMPDAIR--------------------------NMVPDIES  151 (463)
T ss_pred             Ccc-cccCchHHHHHcCcccccccCcHHHHHHHHHHHHhcChHHHH--------------------------HHHHHHHH
Confidence            556 3333333344566 4788889999999999999999999988                          89999999


Q ss_pred             HHHHHHHHhcccCCceeehHHHHHHHHHHHHhhcccCCCccccchHHHHHHHHHHHHHhhhhhhccccccccccCCchhh
Q 009043          203 SVEIMLKRWRHSEGKEIEVSQEFKLLTSEIISRTAFGSSYLEGESIFNKLTNMSFLASRNAYKIKIPLIGDFVKTSDDVE  282 (546)
Q Consensus       203 ~~~~l~~~l~~~~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  282 (546)
                      .++++++.|.   ++++++.+.+..+++++++.++||.+.....+   .+.+....+...  ...+|.   .++....++
T Consensus       152 ~~~~~~~~~~---~~~v~~~~~~~~~~~~v~~~~~fG~~~~~~~~---~~~~~~~~~~~~--~~~~~~---~~p~~~~~~  220 (463)
T PLN02196        152 IAQESLNSWE---GTQINTYQEMKTYTFNVALLSIFGKDEVLYRE---DLKRCYYILEKG--YNSMPI---NLPGTLFHK  220 (463)
T ss_pred             HHHHHHHcCC---CCeEEeHHHHHHHHHHHHHHHHcCCCCchHHH---HHHHHHHHHhcc--hhcccc---cCCCccchH
Confidence            9999998885   45799999999999999999999987532111   122222111111  111231   233333456


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHH
Q 009043          283 GDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHETTTKLLTWTI  362 (546)
Q Consensus       283 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~dtt~~~l~~~l  362 (546)
                      ..++.+.+.+++.+.++++++..   .   ...|+++.+++.      +.+++++++.+++..+++||+|||+++++|++
T Consensus       221 ~~~a~~~~~~~~~~~i~~~~~~~---~---~~~d~l~~ll~~------~~~l~~~ei~~~~~~~~~Ag~dTta~~l~~~l  288 (463)
T PLN02196        221 SMKARKELAQILAKILSKRRQNG---S---SHNDLLGSFMGD------KEGLTDEQIADNIIGVIFAARDTTASVLTWIL  288 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC---C---CcccHHHHHHhc------CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            67788888888888888776431   1   457899988853      13589999999999999999999999999999


Q ss_pred             HHHccChHHHHHHHHHHHHHhC----CCCCCccccCCChhHHHHHHhhhcCCCCCCCcceeeccccccCCeeeCCCCEEE
Q 009043          363 LLLATHTDWQEKLREEVLELFG----QKNPAPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGKYILPANMELV  438 (546)
Q Consensus       363 ~~L~~~P~~~~~lr~Ei~~~~~----~~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~~r~~~~d~~l~g~~ip~G~~v~  438 (546)
                      ++|++||++|+|+++|++++.+    ++.++++++.++|||+||++|+||++|+++...|.+.+|++++||.|||||.|+
T Consensus       289 ~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IpkGt~v~  368 (463)
T PLN02196        289 KYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVL  368 (463)
T ss_pred             HHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcChHHHHHHHHHHhcCCCccccceeeccccccCCEEeCCCCEEE
Confidence            9999999999999999999886    245889999999999999999999999999988999999999999999999999


Q ss_pred             ecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHhhceEEeCCCCc
Q 009043          439 IPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQRYRFNLSPSYV  518 (546)
Q Consensus       439 ~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~  518 (546)
                      ++++++||||++| +||++|+||||++.      ..+..++|||.|+|.|+|+++|+.|++++++.|+++|+|++.++..
T Consensus       369 ~~~~~~~rd~~~~-~dP~~F~PeRfl~~------~~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~  441 (463)
T PLN02196        369 PLFRNIHHSADIF-SDPGKFDPSRFEVA------PKPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTSN  441 (463)
T ss_pred             eeHHHhcCCchhc-CCcCccChhhhcCC------CCCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCCC
Confidence            9999999999999 99999999999963      2456899999999999999999999999999999999999876532


Q ss_pred             cCCceeEeeecCCCCeEEEEec
Q 009043          519 HSPVLVVTLRPQHGLQVIFQPL  540 (546)
Q Consensus       519 ~~~~~~~~~~~~~~~~v~~~~~  540 (546)
                      . .....+..|+++++|+++..
T Consensus       442 ~-~~~~~~~~p~~~~~~~~~~~  462 (463)
T PLN02196        442 G-IQYGPFALPQNGLPIALSRK  462 (463)
T ss_pred             c-eEEcccccCCCCceEEEecC
Confidence            2 23344567999999999864


No 21 
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=9.9e-69  Score=522.07  Aligned_cols=447  Identities=23%  Similarity=0.326  Sum_probs=377.7

Q ss_pred             CCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEc-ccCccEEEeCCHHHHHHHHhcC
Q 009043           44 GIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTW-YGSRAQLVITQPELIKEILSNS  122 (546)
Q Consensus        44 ~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~-~g~~~~vvv~~p~~~~~il~~~  122 (546)
                      .+|||+++|++|.++.+...+.              .+.++....++++||+||+.. +|+...|.|.||+.++.++++.
T Consensus        51 ~IP~p~~~~~l~~l~~~~~~~~--------------~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~E  116 (519)
T KOG0159|consen   51 EIPGPKGLPFLGLLWIWRAGGA--------------TKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNE  116 (519)
T ss_pred             hcCCCCCccHHHHHHHHHhhhh--------------hHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcC
Confidence            6899999999999887443222              366889999999999999999 8888999999999999999987


Q ss_pred             CCCCCCCC----chhHHHHhhc--CCccccCCchHHHhhhhcccc-CChhhhhhhcchhhhhhhhHHHHHhhhccccccc
Q 009043          123 DGTYPKVQ----APGFLRKILG--DGLVTAGGENWHRQRKLATLA-FYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQD  195 (546)
Q Consensus       123 ~~~~~~~~----~~~~~~~~~g--~~l~~~~g~~w~~~R~~~~~~-f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (546)
                      + .++-++    ......+.++  .|++..+|+.|++.|..+++. +++++++                          .
T Consensus       117 G-~~P~Rp~~~~~w~~~rd~~~~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~--------------------------~  169 (519)
T KOG0159|consen  117 G-KYPFRPLLIEPWVAYRDFRGGVCGLFLLEGPEWQRLRSALNPLLLQPQAVR--------------------------R  169 (519)
T ss_pred             C-CCCCcccccchhhhhHHhhccCCCcccCCCHHHHHHHHHhchhhcCHHHHH--------------------------H
Confidence            6 565552    1223445554  689999999999999999976 6788888                          9


Q ss_pred             cHHHHHHHHHHHHHHhccc-----CCceeehHHHHHHHHHHHHhhcccCCCcc----ccchHHHHHHH-HHHHHHhhhhh
Q 009043          196 MIPAMVASVEIMLKRWRHS-----EGKEIEVSQEFKLLTSEIISRTAFGSSYL----EGESIFNKLTN-MSFLASRNAYK  265 (546)
Q Consensus       196 ~~~~~~~~~~~l~~~l~~~-----~~~~vdl~~~~~~~~~~vi~~~~fG~~~~----~~~~~~~~~~~-~~~~~~~~~~~  265 (546)
                      +.+.+++.+++++..++..     ...+.|+...+.+++++.++.++||.+.+    +.++....+.+ +...+......
T Consensus       170 yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~wslEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s~~l  249 (519)
T KOG0159|consen  170 YLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELYRWSLESICLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESSAQL  249 (519)
T ss_pred             HhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhHHHH
Confidence            9999999999998888764     23478999999999999999999999885    12233333333 33333344445


Q ss_pred             hccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHH
Q 009043          266 IKIPLIGDFVKTSDDVEGDKLEQGIRDSIIKMMKTREEKALKGESE--GYGNDYFGLLLKAYHDPDMTKRISLDVLIDEC  343 (546)
Q Consensus       266 ~~~p~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~--~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~  343 (546)
                      ...|.++++++++.|++..++.+.+.+++.++|+...++.....+.  +....++..|.+.        .++.+++..++
T Consensus       250 ~~~p~l~r~~~t~~wk~~~~~~D~i~~~~~~~Id~~l~~l~~~~~~~~~~~~~l~~~L~~~--------~l~~k~~~~~~  321 (519)
T KOG0159|consen  250 MLMPSLWRYFPTKVWKDFVRAWDQIFDVGDKYIDNALEELEKQDSAGSEYTGSLLELLLRK--------ELSRKDAKANV  321 (519)
T ss_pred             HhcchHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHc--------cCCHHHHHHHH
Confidence            6667787999999999999999999999999999999887765432  1122333333332        57789999999


Q ss_pred             HHHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCC--CCCCccccCCChhHHHHHHhhhcCCCCCCCcceeec
Q 009043          344 KTFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQ--KNPAPDGIGKLKTMSMVINESLRLYPPAVNISRNVE  421 (546)
Q Consensus       344 ~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~--~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~~r~~~  421 (546)
                      ++++.||.||||.++.|+||+|++||++|++|++|+.++.++  ..++.+++.++|||.||||||+||||.+|+..|...
T Consensus       322 ~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~R~l~  401 (519)
T KOG0159|consen  322 MDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAVLPSGNSELTQKALTNMPYLRACIKETLRLYPVVPGNGRVLP  401 (519)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHHHhhhceeccccccccccc
Confidence            999999999999999999999999999999999999999874  678899999999999999999999999999999999


Q ss_pred             cccccCCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHH
Q 009043          422 REVRLGKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIA  501 (546)
Q Consensus       422 ~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~  501 (546)
                      +|..++||.|||||.|.++.+.+.+||++| ++|++|+|||||+++.+.  .++..++|||.|+|+|+||.+|++|+.+.
T Consensus       402 ~D~vL~gY~vPagT~V~l~~~~~~r~~~~F-~~p~~F~PeRWL~~~~~~--~~pF~~LPFGfG~R~C~GRRiAElEl~ll  478 (519)
T KOG0159|consen  402 KDLVLSGYHVPAGTLVVLFLYVLGRNPAYF-PDPEEFLPERWLKPSTKT--IHPFASLPFGFGPRMCLGRRIAELELHLL  478 (519)
T ss_pred             hhceeccceecCCCeEEEeehhhccChhhC-CCccccChhhhcccccCC--CCCceecCCCCCccccchHHHHHHHHHHH
Confidence            999999999999999999999999999999 999999999999975322  58899999999999999999999999999


Q ss_pred             HHHHHhhceEEeCCCCccCCceeEeeecCCCCeEEEEeccc
Q 009043          502 LSMILQRYRFNLSPSYVHSPVLVVTLRPQHGLQVIFQPLSV  542 (546)
Q Consensus       502 l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  542 (546)
                      |++|+++|+++..+..+-.....+++.|..++.+++++|++
T Consensus       479 Larllr~f~V~~~~~~pv~~~~~~il~P~~~l~f~f~~r~~  519 (519)
T KOG0159|consen  479 LARLLRNFKVEFLHEEPVEYVYRFILVPNRPLRFKFRPRNE  519 (519)
T ss_pred             HHHHHHhcceeecCCCCccceeEEEEcCCCCcceeeeeCCC
Confidence            99999999999877656666788999999999999999863


No 22 
>PLN02655 ent-kaurene oxidase
Probab=100.00  E-value=3.8e-68  Score=551.16  Aligned_cols=442  Identities=18%  Similarity=0.259  Sum_probs=348.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcCCC
Q 009043           45 IRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNSDG  124 (546)
Q Consensus        45 ~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~~  124 (546)
                      ||||+++|++||++++..                 .+++.++.+|+++||++|++++|+.++|+|+||+.+++++.++..
T Consensus         1 ppgp~~lP~iG~l~~~~~-----------------~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~   63 (466)
T PLN02655          1 VPAVPGLPVIGNLLQLKE-----------------KKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFS   63 (466)
T ss_pred             CcCCCCCCccccHHHcCC-----------------CchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCc
Confidence            589999999999988742                 135778999999999999999999999999999999999998887


Q ss_pred             CCCCCCchhHHHHhhcCC--cccc-CCchHHHhhhhccc-cCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHHH
Q 009043          125 TYPKVQAPGFLRKILGDG--LVTA-GGENWHRQRKLATL-AFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPAM  200 (546)
Q Consensus       125 ~~~~~~~~~~~~~~~g~~--l~~~-~g~~w~~~R~~~~~-~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (546)
                      .|++++.......+.|++  +++. +|+.|+++|+.+.+ .|+...++                          .+.+.+
T Consensus        64 ~f~~r~~~~~~~~~~~~~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~--------------------------~~~~~~  117 (466)
T PLN02655         64 SISTRKLSKALTVLTRDKSMVATSDYGDFHKMVKRYVMNNLLGANAQK--------------------------RFRDTR  117 (466)
T ss_pred             hhcCCChhhHHHHHhcCCCceeeCCCcHHHHHHHHHHHHHhcCchHHH--------------------------HhHHHH
Confidence            887766444444455533  4444 49999999987764 56666666                          778877


Q ss_pred             HHHHHHHHHHhccc----CCceeehHHHHHHHHHHHHhhcccCCCccccc--hHH------HHHHHHHHHHHhh----hh
Q 009043          201 VASVEIMLKRWRHS----EGKEIEVSQEFKLLTSEIISRTAFGSSYLEGE--SIF------NKLTNMSFLASRN----AY  264 (546)
Q Consensus       201 ~~~~~~l~~~l~~~----~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~--~~~------~~~~~~~~~~~~~----~~  264 (546)
                      .+.++.+++.+.+.    .++++|+.+.+..+++++++.++||.++....  +..      ..+..........    ..
T Consensus       118 ~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (466)
T PLN02655        118 DMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALGEDVESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDW  197 (466)
T ss_pred             HHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHhCCcch
Confidence            77777777776432    35689999999999999999999998765321  110      1111111111111    11


Q ss_pred             hhccccccccccCCchh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHH
Q 009043          265 KIKIPLIGDFVKTSDDV-EGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDEC  343 (546)
Q Consensus       265 ~~~~p~~~~~l~~~~~~-~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~  343 (546)
                      ...+|.+ ++++..... ...+....+.+++.+.+++++++...+.   ...|+++.+++..      ..++++++.+++
T Consensus       198 ~~~~p~l-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~d~l~~ll~~~------~~ls~~~i~~~~  267 (466)
T PLN02655        198 RDFFPYL-SWIPNKSFETRVQTTEFRRTAVMKALIKQQKKRIARGE---ERDCYLDFLLSEA------THLTDEQLMMLV  267 (466)
T ss_pred             hhhhhhh-hhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CcccHHHHHHhcc------CCCCHHHHHHHH
Confidence            2345554 555432122 2222334455777788877766533322   3468999999763      248999999999


Q ss_pred             HHHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCCCCCCccccCCChhHHHHHHhhhcCCCCCCCc-ceeecc
Q 009043          344 KTFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQKNPAPDGIGKLKTMSMVINESLRLYPPAVNI-SRNVER  422 (546)
Q Consensus       344 ~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~-~r~~~~  422 (546)
                      .++++||+|||+++++|++++|++||++|+|+|+||+++.++..+++++++++|||+||++||||++|+++.. +|.+.+
T Consensus       268 ~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~  347 (466)
T PLN02655        268 WEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGDERVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHE  347 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCC
Confidence            9999999999999999999999999999999999999999876699999999999999999999999999987 899999


Q ss_pred             ccccCCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHH
Q 009043          423 EVRLGKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIAL  502 (546)
Q Consensus       423 d~~l~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l  502 (546)
                      |++++||.|||||.|+++.+++||||++| +||++|+||||++.....  .+...++|||+|+|+|||++||+.++++++
T Consensus       348 d~~~~g~~ip~gt~v~~~~~~~~~d~~~~-~~p~~F~PeR~~~~~~~~--~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l  424 (466)
T PLN02655        348 DTTLGGYDIPAGTQIAINIYGCNMDKKRW-ENPEEWDPERFLGEKYES--ADMYKTMAFGAGKRVCAGSLQAMLIACMAI  424 (466)
T ss_pred             CcccCCEEECCCCEEEecHHHhcCCcccC-CChhccCccccCCCCccc--CCcccccCCCCCCCCCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999 899999999999753221  245789999999999999999999999999


Q ss_pred             HHHHhhceEEeCCCCc-cCCceeEeeecCCCCeEEEEeccc
Q 009043          503 SMILQRYRFNLSPSYV-HSPVLVVTLRPQHGLQVIFQPLSV  542 (546)
Q Consensus       503 ~~ll~~f~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~  542 (546)
                      ++||++|++++.++.. .....++++.++++++|++++|..
T Consensus       425 ~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  465 (466)
T PLN02655        425 ARLVQEFEWRLREGDEEKEDTVQLTTQKLHPLHAHLKPRGS  465 (466)
T ss_pred             HHHHHHeEEEeCCCCccccchhheeEeecCCcEEEEeecCC
Confidence            9999999999876522 333446778899999999998864


No 23 
>PF00067 p450:  Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature;  InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00  E-value=2e-68  Score=555.72  Aligned_cols=445  Identities=29%  Similarity=0.494  Sum_probs=363.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcCCC
Q 009043           45 IRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNSDG  124 (546)
Q Consensus        45 ~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~~  124 (546)
                      ||||+++|++||++.+.+.                ++++.++.+++++||+||++++++.++|+|+||+.+++++.++..
T Consensus         1 Ppgp~~~p~~G~~~~~~~~----------------~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~   64 (463)
T PF00067_consen    1 PPGPPPLPILGNLLQFRRK----------------GNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSK   64 (463)
T ss_dssp             SSCSSSBTTTBTHHHHHTT----------------HHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTT
T ss_pred             CcCCCCcCceeEHHHhcCC----------------CcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccc
Confidence            6999999999999999741                256888999999999999999999999999999999999998875


Q ss_pred             CCCCCCchhHH----HHhhcCCccccCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHHH
Q 009043          125 TYPKVQAPGFL----RKILGDGLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPAM  200 (546)
Q Consensus       125 ~~~~~~~~~~~----~~~~g~~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (546)
                      .++.......+    ....+.+++..+|+.|+.+|+++.+.|+.....                          .+.+.+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~--------------------------~~~~~i  118 (463)
T PF00067_consen   65 YFSFRPRPPWFEIFRGPFGGKGLFFSDGERWRRQRRLLAPAFSSKKIL--------------------------KLEPLI  118 (463)
T ss_dssp             TEEEEHCHHHHHHHHHHHTTTSSTTSSHHHHHHHHHHHHHHHSHHHHH--------------------------HHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc--------------------------cccccc
Confidence            66554222222    245678999999999999999999999888222                          588999


Q ss_pred             HHHHHHHHHHhcccC--CceeehHHHHHHHHHHHHhhcccCCCcc-ccchHH----HHHHHHHHHHHhh--hhhhccccc
Q 009043          201 VASVEIMLKRWRHSE--GKEIEVSQEFKLLTSEIISRTAFGSSYL-EGESIF----NKLTNMSFLASRN--AYKIKIPLI  271 (546)
Q Consensus       201 ~~~~~~l~~~l~~~~--~~~vdl~~~~~~~~~~vi~~~~fG~~~~-~~~~~~----~~~~~~~~~~~~~--~~~~~~p~~  271 (546)
                      ++.++.+++.+....  ++++|+.+.+..+++++++.++||.++. .+++..    +.+......+...  .....+|++
T Consensus       119 ~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  198 (463)
T PF00067_consen  119 DEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVLFGKDFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWL  198 (463)
T ss_dssp             HHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHHHSSHHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccceeeeecccccccccccccccccceeeecccccccccccccccccccccccccccccccccc
Confidence            999999999998762  3369999999999999999999999876 223222    2223332222111  123344544


Q ss_pred             cccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHc-CCCCCCCCCCHHHHHHHHHHHHHhh
Q 009043          272 GDFVKTSDDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAY-HDPDMTKRISLDVLIDECKTFYIAG  350 (546)
Q Consensus       272 ~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~-~~~~~~~~l~~~~i~~~~~~~~~ag  350 (546)
                       ++++....+...++.+.+.+++.+.+++++++...+..  ...|+++.+++.. ..+ .+..++++++.+++..+++||
T Consensus       199 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~d~l~~ll~~~~~~~-~~~~ls~~~i~~~~~~~~~ag  274 (463)
T PF00067_consen  199 -KYLPTPLFRRFKRARDRLRKYIKEIIEERREELDDGDE--SRRDLLDSLLQASSDSD-GPSGLSDEEIAAELLTLLFAG  274 (463)
T ss_dssp             -CTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHSSSS--SCSSHHHHHHHHHHTTT-TTSSSSHHHHHHHHHHHHHHH
T ss_pred             -cccccccccccccccccccccccccccccccccccccc--ccccccccccccccccc-ccccccccccccccccccccc
Confidence             56666666777778889999999999999887776522  6789999999986 332 114799999999999999999


Q ss_pred             cccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCC-CCCCccccCCChhHHHHHHhhhcCCCCCC-CcceeeccccccCC
Q 009043          351 HETTTKLLTWTILLLATHTDWQEKLREEVLELFGQ-KNPAPDGIGKLKTMSMVINESLRLYPPAV-NISRNVEREVRLGK  428 (546)
Q Consensus       351 ~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~-~~~~~~~~~~lp~l~a~i~EtlRl~p~~~-~~~r~~~~d~~l~g  428 (546)
                      +|||+.+++|++++|++||++|+|+|+||+++.++ ..++.+++++||||+|||+||||++|+++ .++|.+.+|++++|
T Consensus       275 ~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g  354 (463)
T PF00067_consen  275 HDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGDGREITFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGG  354 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTTSSSHHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999974 46889999999999999999999999999 56999999999999


Q ss_pred             eeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHhh
Q 009043          429 YILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQR  508 (546)
Q Consensus       429 ~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~  508 (546)
                      |.|||||.|+++.+++|+||++| +||++|+||||++.+.... .....++|||.|+|.|||+++|+.|++++++.||++
T Consensus       355 ~~ip~gt~v~~~~~~~~~d~~~~-~dp~~F~P~R~~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~  432 (463)
T PF00067_consen  355 YFIPKGTIVIVSIYALHRDPEYF-PDPDEFDPERFLDERGISN-RPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRR  432 (463)
T ss_dssp             EEEETTSEEEEEHHHHTTSTTTS-SSTTS--TTGGBTTTSTBC-SSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccc-ccccccccccccccccccc-cccccccccccccccchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999 9999999999998754111 467889999999999999999999999999999999


Q ss_pred             ceEEeCCCCccCCcee--EeeecCCCCeEEE
Q 009043          509 YRFNLSPSYVHSPVLV--VTLRPQHGLQVIF  537 (546)
Q Consensus       509 f~~~~~~~~~~~~~~~--~~~~~~~~~~v~~  537 (546)
                      |+|++.++....+...  .++.|..+++|.|
T Consensus       433 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (463)
T PF00067_consen  433 FDFELVPGSEPEPQEQQNGFLLPPKPLKVKF  463 (463)
T ss_dssp             EEEEESTTSSGGEEECSCSSSEEESSSEEEE
T ss_pred             CEEEECCCCCCCCccccCceEeeCCCcEEeC
Confidence            9999976544433222  4566667788765


No 24 
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00  E-value=4.3e-67  Score=541.58  Aligned_cols=436  Identities=19%  Similarity=0.269  Sum_probs=349.3

Q ss_pred             CCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcCC
Q 009043           44 GIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNSD  123 (546)
Q Consensus        44 ~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~  123 (546)
                      .||||.++|++||++.+....             +...++.++.++.++||+||++++|+.++||++||+++++++.+++
T Consensus         8 ~Ppg~~~~P~iG~~~~l~~~~-------------~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~   74 (452)
T PLN03141          8 LPKGSLGWPVIGETLDFISCA-------------YSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDG   74 (452)
T ss_pred             CCCCCCCCCchhhHHHHHhhc-------------ccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCC
Confidence            677999999999998875411             0123577889999999999999999999999999999999999887


Q ss_pred             CCCCCCCchhHHHHhhcC-CccccCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHHHHH
Q 009043          124 GTYPKVQAPGFLRKILGD-GLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPAMVA  202 (546)
Q Consensus       124 ~~~~~~~~~~~~~~~~g~-~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (546)
                      ..|..+. ......++|. +++..+|+.|+++|+++.+.|+..++..                         ...+.+.+
T Consensus        75 ~~~~~~~-~~~~~~l~g~~~~~~~~g~~wr~~r~~~~~~~~~~~l~~-------------------------~~~~~~~~  128 (452)
T PLN03141         75 NAFVPAY-PKSLTELMGKSSILLINGSLQRRVHGLIGAFLKSPHLKA-------------------------QITRDMER  128 (452)
T ss_pred             CeeeccC-chhHHHHhCcccccccCcHHHHHHHHHHHHhcCcHHHHH-------------------------HHHHHHHH
Confidence            6675442 2345556774 6888899999999999999998777661                         24566777


Q ss_pred             HHHHHHHHhcccCCceeehHHHHHHHHHHHHhhcccCCCccccchHHHHHHHHHHHHHhhhhhhccccccccccCCchhh
Q 009043          203 SVEIMLKRWRHSEGKEIEVSQEFKLLTSEIISRTAFGSSYLEGESIFNKLTNMSFLASRNAYKIKIPLIGDFVKTSDDVE  282 (546)
Q Consensus       203 ~~~~l~~~l~~~~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  282 (546)
                      .++++++.+..  ++++++.+.+..++++++++++||.+...+   ...+...........  ..+|.   ++|.....+
T Consensus       129 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~vi~~~~~G~~~~~~---~~~~~~~~~~~~~~~--~~~~~---~~p~~~~~~  198 (452)
T PLN03141        129 YVSESLDSWRD--DPPVLVQDETKKIAFEVLVKALISLEPGEE---MEFLKKEFQEFIKGL--MSLPI---KLPGTRLYR  198 (452)
T ss_pred             HHHHHHHhccC--CCCEEhHHHHHHHHHHHHHHHHcCCCchHH---HHHHHHHHHHHhhhH--HhCcc---CCCchHhHH
Confidence            77777777643  568999999999999999999999876421   122222222111111  11231   233322344


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhhcccHHHHHHH
Q 009043          283 GDKLEQGIRDSIIKMMKTREEKALKGESE--GYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHETTTKLLTW  360 (546)
Q Consensus       283 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~--~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~dtt~~~l~~  360 (546)
                      ..++.+++.+++.+.+++++.....+...  ....|+++.+++...     ..++++++++++..+++||+|||+++++|
T Consensus       199 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~-----~~l~~~~i~~~~~~ll~Ag~dTts~tl~~  273 (452)
T PLN03141        199 SLQAKKRMVKLVKKIIEEKRRAMKNKEEDETGIPKDVVDVLLRDGS-----DELTDDLISDNMIDMMIPGEDSVPVLMTL  273 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCccccCChhhHHHHHHhcCC-----CCCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            55678899999999998887654332110  024689999987532     35899999999999999999999999999


Q ss_pred             HHHHHccChHHHHHHHHHHHHHhC-----CCCCCccccCCChhHHHHHHhhhcCCCCCCCcceeeccccccCCeeeCCCC
Q 009043          361 TILLLATHTDWQEKLREEVLELFG-----QKNPAPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGKYILPANM  435 (546)
Q Consensus       361 ~l~~L~~~P~~~~~lr~Ei~~~~~-----~~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~~r~~~~d~~l~g~~ip~G~  435 (546)
                      ++++|++||++|+++++|++++.+     +..++.+++.++|||+|||+|++|++|++++++|.+.+|++++||.||||+
T Consensus       274 ~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~~~R~~~~d~~l~g~~IPkG~  353 (452)
T PLN03141        274 AVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWTDYMSLPFTQNVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGW  353 (452)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHHHhccHHHHHHHHHHHhccCCcCCcceeecCCeeECCEEECCCC
Confidence            999999999999999999998863     345788999999999999999999999998889999999999999999999


Q ss_pred             EEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHhhceEEeCC
Q 009043          436 ELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQRYRFNLSP  515 (546)
Q Consensus       436 ~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~  515 (546)
                      .|+++++++||||++| +||++|+||||++.+     ..+..++|||.|+|.|+|++||.+|+++++++|+++|+|++.+
T Consensus       354 ~V~~~~~~~~~d~~~~-~dP~~F~PeRfl~~~-----~~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~  427 (452)
T PLN03141        354 CVLAYFRSVHLDEENY-DNPYQFNPWRWQEKD-----MNNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEE  427 (452)
T ss_pred             EEEEehHhccCCchhc-CCccccCcccccCCC-----CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCC
Confidence            9999999999999999 999999999999752     2356799999999999999999999999999999999999876


Q ss_pred             CCccCCceeEeeecCCCCeEEEEeccc
Q 009043          516 SYVHSPVLVVTLRPQHGLQVIFQPLSV  542 (546)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~v~~~~~~~  542 (546)
                      +...   ...++.|.++++|.+++|.+
T Consensus       428 ~~~~---~~~~~~~~~~~~~~~~~~~~  451 (452)
T PLN03141        428 DTIV---NFPTVRMKRKLPIWVTRIDD  451 (452)
T ss_pred             CCee---ecccccCCCCceEEEEeCCC
Confidence            5322   22577999999999999964


No 25 
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00  E-value=3.1e-66  Score=542.62  Aligned_cols=440  Identities=22%  Similarity=0.320  Sum_probs=350.0

Q ss_pred             hcCCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCC--cEEEcccCccEEEeCCHHHHHHHH
Q 009043           42 SQGIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGM--NFLTWYGSRAQLVITQPELIKEIL  119 (546)
Q Consensus        42 ~~~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~--v~~~~~g~~~~vvv~~p~~~~~il  119 (546)
                      .+.+|||+++|++|+++.+....+             .++++.++.+++++||+  +|++++++.++|+++||+.+++++
T Consensus        41 ~~lpPgp~~~PilG~l~~~~~~~~-------------~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl  107 (490)
T PLN02302         41 PPLPPGDLGWPVIGNMWSFLRAFK-------------SSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVL  107 (490)
T ss_pred             CCCcCCCCCCCccccHHHHHHhcc-------------cCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHH
Confidence            346899999999999998864211             12457789999999997  799999999999999999999999


Q ss_pred             hcCCCCCCCCCchhHHHHhhcC-CccccCCchHHHhhhhccccCC-hhhhhhhcchhhhhhhhHHHHHhhhccccccccH
Q 009043          120 SNSDGTYPKVQAPGFLRKILGD-GLVTAGGENWHRQRKLATLAFY-AESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMI  197 (546)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~g~-~l~~~~g~~w~~~R~~~~~~f~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (546)
                      .+++ .|.+....... ..+|. ++...+|+.|+++|+.+.+.|+ .++++                          .+.
T Consensus       108 ~~~~-~f~~~~~~~~~-~~~g~~~~~~~~g~~w~~~R~~~~~~f~~~~~l~--------------------------~~~  159 (490)
T PLN02302        108 TDDD-AFEPGWPESTV-ELIGRKSFVGITGEEHKRLRRLTAAPVNGPEALS--------------------------TYI  159 (490)
T ss_pred             cCCC-ccccCCchhHH-HHhccccccccCcHHHHHHHHHHHhccCCHHHHH--------------------------HHH
Confidence            8764 56544322222 34564 4556789999999999999995 67787                          899


Q ss_pred             HHHHHHHHHHHHHhcccCCceeehHHHHHHHHHHHHhhcccCCCccccchHHHHHHHHHHHHHhhhhhhccccccccccC
Q 009043          198 PAMVASVEIMLKRWRHSEGKEIEVSQEFKLLTSEIISRTAFGSSYLEGESIFNKLTNMSFLASRNAYKIKIPLIGDFVKT  277 (546)
Q Consensus       198 ~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~  277 (546)
                      +.+.+.++++++.+..  ++.+|+.+.+..++++++++++||.+.....+   .+............  ..+   ..+|.
T Consensus       160 ~~i~~~v~~~~~~~~~--~~~v~~~~~~~~~~~~vi~~~~~G~~~~~~~~---~~~~~~~~~~~~~~--~~~---~~~p~  229 (490)
T PLN02302        160 PYIEENVKSCLEKWSK--MGEIEFLTELRKLTFKIIMYIFLSSESELVME---ALEREYTTLNYGVR--AMA---INLPG  229 (490)
T ss_pred             HHHHHHHHHHHHHhcC--CCCEehHHHHHHHHHHHHHHHHcCCCChHHHH---HHHHHHHHHHHHhh--hCC---cCCCc
Confidence            9999999999999864  45699999999999999999999987643221   11111111111110  111   11222


Q ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhhcccHHHH
Q 009043          278 SDDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHETTTKL  357 (546)
Q Consensus       278 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~dtt~~~  357 (546)
                      ....+..++.+.+.+++.+.++++++....+.. ....|+++.+++...++  +..++++++++++..+++||+|||+++
T Consensus       230 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~~~~d~l~~ll~~~~~~--~~~~~~~~i~~~~~~~~~Ag~dtta~~  306 (490)
T PLN02302        230 FAYHRALKARKKLVALFQSIVDERRNSRKQNIS-PRKKDMLDLLLDAEDEN--GRKLDDEEIIDLLLMYLNAGHESSGHL  306 (490)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCcCCHHHHHHhhhccC--CCCCCHHHHHHHHHHHHHhhHHHHHHH
Confidence            223455567788888888888888765432211 14579999999875432  345899999999999999999999999


Q ss_pred             HHHHHHHHccChHHHHHHHHHHHHHhCCC-----CCCccccCCChhHHHHHHhhhcCCCCCCCcceeeccccccCCeeeC
Q 009043          358 LTWTILLLATHTDWQEKLREEVLELFGQK-----NPAPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGKYILP  432 (546)
Q Consensus       358 l~~~l~~L~~~P~~~~~lr~Ei~~~~~~~-----~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~~r~~~~d~~l~g~~ip  432 (546)
                      ++|++++|++||++|+|+|+|++++.++.     .+++++++++|||+|||+|+||++|+++..+|.+.+|++++||.||
T Consensus       307 l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~~~R~~~~d~~~~g~~Ip  386 (490)
T PLN02302        307 TMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIP  386 (490)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHhcChHHHHHHHHHHHhCCCcccchhcccCCEeECCEEEC
Confidence            99999999999999999999999998632     2788999999999999999999999999888999999999999999


Q ss_pred             CCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHhhceEE
Q 009043          433 ANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQRYRFN  512 (546)
Q Consensus       433 ~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~  512 (546)
                      ||+.|+++.+++||||++| +||++|+||||++..     ..+..++|||.|+|.|+|+++|..|++++++.|+++|+|+
T Consensus       387 ~Gt~v~~~~~~~~rd~~~~-~dP~~F~PeR~~~~~-----~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~  460 (490)
T PLN02302        387 KGWKVLAWFRQVHMDPEVY-PNPKEFDPSRWDNYT-----PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLE  460 (490)
T ss_pred             CCCEEEeeHHHhcCCcccC-CCccccChhhcCCCC-----CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeE
Confidence            9999999999999999999 999999999999642     2456799999999999999999999999999999999999


Q ss_pred             eCCCCccCCceeEeeecCCCCeEEEEeccc
Q 009043          513 LSPSYVHSPVLVVTLRPQHGLQVIFQPLSV  542 (546)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  542 (546)
                      +.++... ......+.|.+++++++++|..
T Consensus       461 ~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~  489 (490)
T PLN02302        461 RLNPGCK-VMYLPHPRPKDNCLARITKVAS  489 (490)
T ss_pred             EcCCCCc-ceeCCCCCCCCCceEEEEeccC
Confidence            8754211 1122347999999999998864


No 26 
>PLN03018 homomethionine N-hydroxylase
Probab=100.00  E-value=1.6e-66  Score=543.47  Aligned_cols=456  Identities=16%  Similarity=0.212  Sum_probs=339.4

Q ss_pred             cCCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHh-CCcEEEcccCccEEEeCCHHHHHHHHhc
Q 009043           43 QGIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQY-GMNFLTWYGSRAQLVITQPELIKEILSN  121 (546)
Q Consensus        43 ~~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ky-G~v~~~~~g~~~~vvv~~p~~~~~il~~  121 (546)
                      +.||||+++|++||++.+.....                ...++.++.++| |+||++++|+.++|+|+||+.+++++.+
T Consensus        40 ~~PPgp~~~P~iGnl~~l~~~~~----------------~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~  103 (534)
T PLN03018         40 QLPPGPPGWPILGNLPELIMTRP----------------RSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRE  103 (534)
T ss_pred             CCCcCCCCCCeeccHHHhccCCC----------------cchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHh
Confidence            36899999999999988742100                012455556665 7999999999999999999999999998


Q ss_pred             CCCCCCCCCchhHHHHhhc--CCcccc-CCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHH
Q 009043          122 SDGTYPKVQAPGFLRKILG--DGLVTA-GGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIP  198 (546)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~g--~~l~~~-~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (546)
                      ++..|++++.......+.+  .++++. +|+.|+++|+++++.|.......                         .+.+
T Consensus       104 ~~~~f~~rp~~~~~~~l~~~~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~-------------------------~~~~  158 (534)
T PLN03018        104 RDADLADRPQLSIMETIGDNYKSMGTSPYGEQFMKMKKVITTEIMSVKTLN-------------------------MLEA  158 (534)
T ss_pred             CcHhhcCCCCchhhhhhccCCCceEecCCCHHHHHHHHHHHHHhcCHHHHH-------------------------HHHH
Confidence            7777877664333333322  246665 59999999999998865544331                         4555


Q ss_pred             HHHHHHHHHHHHhccc--CCceeehHHHHHHHHHHHHhhcccCCCccc-------cchHHHHHHHHHHHHHhhh------
Q 009043          199 AMVASVEIMLKRWRHS--EGKEIEVSQEFKLLTSEIISRTAFGSSYLE-------GESIFNKLTNMSFLASRNA------  263 (546)
Q Consensus       199 ~~~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~-------~~~~~~~~~~~~~~~~~~~------  263 (546)
                      ..+.+++++++.+...  .+.++|+.+.+.+++++++++++||.++..       +.+....+...........      
T Consensus       159 ~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (534)
T PLN03018        159 ARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVTMRMLFGRRHVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGF  238 (534)
T ss_pred             HHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHHHHHHhCCccccccccccccccchhHHHHHHHHHHHHHHHhCCC
Confidence            6666788888888642  345799999999999999999999998642       1111111221111111110      


Q ss_pred             -hhhccc-cccccccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHH
Q 009043          264 -YKIKIP-LIGDFVKT-SDDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLI  340 (546)
Q Consensus       264 -~~~~~p-~~~~~l~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~  340 (546)
                       ....+| ++ ++.+. ....+.......+.+++.+.++++++...+........|+++.+++...++ ....+++++++
T Consensus       239 ~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~-~~~~ls~~~i~  316 (534)
T PLN03018        239 SPVDYVERWL-RGWNIDGQEERAKVNVNLVRSYNNPIIDERVELWREKGGKAAVEDWLDTFITLKDQN-GKYLVTPDEIK  316 (534)
T ss_pred             cHHHHhhhhh-hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcccHHHHHHHhhccc-CCCCCCHHHHH
Confidence             011122 11 11111 112234445566778888888887654322111113469999999765332 11248999999


Q ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhC-CCCCCccccCCChhHHHHHHhhhcCCCCCCCc-ce
Q 009043          341 DECKTFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFG-QKNPAPDGIGKLKTMSMVINESLRLYPPAVNI-SR  418 (546)
Q Consensus       341 ~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~-~~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~-~r  418 (546)
                      +++..+++||+|||+++++|++++|++||++|+|+++||+++++ ++.++.+++.++|||+||++||||++|++|.. +|
T Consensus       317 ~~~~~~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r  396 (534)
T PLN03018        317 AQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVGKDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPH  396 (534)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCc
Confidence            99999999999999999999999999999999999999999998 45688999999999999999999999999987 79


Q ss_pred             eeccccccCCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCccccc----CCCCCcccccCCCCCCCcchHHH
Q 009043          419 NVEREVRLGKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKAS----NNTPAAFLPFSSGPRICVGLNFA  494 (546)
Q Consensus       419 ~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~----~~~~~~~~~Fg~G~r~C~G~~~A  494 (546)
                      .+.+|++++||.|||||.|+++.+++||||++| +||++|+||||++.++...    ...+..++|||+|+|.|+|+++|
T Consensus       397 ~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~-~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA  475 (534)
T PLN03018        397 VARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIW-KDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVG  475 (534)
T ss_pred             ccCCCeeECCEEECCCCEEEEChHHhcCCcccC-CCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHH
Confidence            999999999999999999999999999999999 9999999999997533211    02456799999999999999999


Q ss_pred             HHHHHHHHHHHHhhceEEeCCCC-ccCC-ceeEeeecCCCCeEEEEeccc
Q 009043          495 ATEAKIALSMILQRYRFNLSPSY-VHSP-VLVVTLRPQHGLQVIFQPLSV  542 (546)
Q Consensus       495 ~~~~~~~l~~ll~~f~~~~~~~~-~~~~-~~~~~~~~~~~~~v~~~~~~~  542 (546)
                      ++|+++++++|+++|+|++.++. .... ...+++...++++|++++|.+
T Consensus       476 ~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~R~~  525 (534)
T PLN03018        476 TIMMVMMLARFLQGFNWKLHQDFGPLSLEEDDASLLMAKPLLLSVEPRLA  525 (534)
T ss_pred             HHHHHHHHHHHHHhceEEeCCCCCCCCccccccceecCCCeEEEEEeccc
Confidence            99999999999999999987653 2111 122344455799999999943


No 27 
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00  E-value=8.5e-66  Score=531.10  Aligned_cols=435  Identities=19%  Similarity=0.267  Sum_probs=342.6

Q ss_pred             CCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcCC
Q 009043           44 GIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNSD  123 (546)
Q Consensus        44 ~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~  123 (546)
                      .+|||.++|++||++.+......             .+++.++.+++++||++|++++++.++|+|+||+.+++++.+++
T Consensus        31 lppgp~~~P~iG~~~~~~~~~~~-------------~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~   97 (472)
T PLN02987         31 LPPGSLGLPLVGETLQLISAYKT-------------ENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEG   97 (472)
T ss_pred             CcCCCcCCCchhhHHHHHhhccc-------------CChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCC
Confidence            67899999999999887531100             13567889999999999999999999999999999999999887


Q ss_pred             CCCCCCCchhHHHHhhc-CCccccCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccH-HHHH
Q 009043          124 GTYPKVQAPGFLRKILG-DGLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMI-PAMV  201 (546)
Q Consensus       124 ~~~~~~~~~~~~~~~~g-~~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  201 (546)
                      ..|.++.. .....++| +|+++++|+.|+++|+++...++.+.++                          .+. ..+.
T Consensus        98 ~~f~~~~~-~~~~~~lg~~~l~~~~g~~wr~~R~~~~~f~~~~~~~--------------------------~~~~~~~~  150 (472)
T PLN02987         98 KLFECSYP-GSISNLLGKHSLLLMKGNLHKKMHSLTMSFANSSIIK--------------------------DHLLLDID  150 (472)
T ss_pred             ceEEecCc-HHHHHHhCcccccccCcHHHHHHHHHHHHhcChHHHH--------------------------HHHHHHHH
Confidence            77755432 23345556 5788899999999999986533434443                          221 1233


Q ss_pred             HHHHHHHHHhcccCCceeehHHHHHHHHHHHHhhcccCCCccccchHHHHHHHHHHHHHhhhhhhccccccccccCCchh
Q 009043          202 ASVEIMLKRWRHSEGKEIEVSQEFKLLTSEIISRTAFGSSYLEGESIFNKLTNMSFLASRNAYKIKIPLIGDFVKTSDDV  281 (546)
Q Consensus       202 ~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  281 (546)
                      +.++..++.|.    +++++.+.+.+++++++++++||.+.+...+   .+...............+|++     ....+
T Consensus       151 ~~~~~~~~~~~----~~v~~~~~~~~~t~~vi~~~~fg~~~~~~~~---~~~~~~~~~~~~~~~~~~p~l-----~~~~~  218 (472)
T PLN02987        151 RLIRFNLDSWS----SRVLLMEEAKKITFELTVKQLMSFDPGEWTE---SLRKEYVLVIEGFFSVPLPLF-----STTYR  218 (472)
T ss_pred             HHHHHHHHhhc----cceehHHHHHHHHHHHHHHHHcCCCChHHHH---HHHHHHHHHHhhhhcCCCcCC-----CchHH
Confidence            33344444442    3699999999999999999999987642221   111111111111112223322     12356


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhhcccHHHHHHHH
Q 009043          282 EGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHETTTKLLTWT  361 (546)
Q Consensus       282 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~dtt~~~l~~~  361 (546)
                      +..++.+++.+++.+.++++++....+..  ..+|+++.+++..      .+++++++.+++..+++||+|||+++++|+
T Consensus       219 ~~~~~~~~~~~~~~~~i~~r~~~~~~~~~--~~~d~l~~ll~~~------~~~~~~ei~~~~~~l~~Ag~~tta~~l~~~  290 (472)
T PLN02987        219 RAIQARTKVAEALTLVVMKRRKEEEEGAE--KKKDMLAALLASD------DGFSDEEIVDFLVALLVAGYETTSTIMTLA  290 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCc--ccccHHHHHHhcC------CCCCHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            67788899999999999988765433211  4579999999752      158999999999999999999999999999


Q ss_pred             HHHHccChHHHHHHHHHHHHHhC----CCCCCccccCCChhHHHHHHhhhcCCCCCCCcceeeccccccCCeeeCCCCEE
Q 009043          362 ILLLATHTDWQEKLREEVLELFG----QKNPAPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGKYILPANMEL  437 (546)
Q Consensus       362 l~~L~~~P~~~~~lr~Ei~~~~~----~~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~~r~~~~d~~l~g~~ip~G~~v  437 (546)
                      +++|++||++|+++++|++++.+    +..++++++.++||++||++|+||++|+++..+|.+.+|++++||.|||||.|
T Consensus       291 l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~EtLRl~p~~~~~~R~~~~d~~~~G~~ip~Gt~v  370 (472)
T PLN02987        291 VKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKV  370 (472)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHcccCCCCCCCHHHHhcChHHHHHHHHHHHccCCcCCccccCCCCeeECCEEECCCCEE
Confidence            99999999999999999999875    24578899999999999999999999999988999999999999999999999


Q ss_pred             EecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHhhceEEeCCCC
Q 009043          438 VIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQRYRFNLSPSY  517 (546)
Q Consensus       438 ~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~  517 (546)
                      +++.+++|+||++| +||++|+||||++.+...  .....++|||.|+|.|+|+++|..|++++++.|+++|+|++.++.
T Consensus       371 ~~~~~~~~~d~~~~-~~p~~F~PeRfl~~~~~~--~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~  447 (472)
T PLN02987        371 FASFRAVHLDHEYF-KDARTFNPWRWQSNSGTT--VPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQD  447 (472)
T ss_pred             EEehHHhhCCcccC-CCccccCcccCCCCCCCC--CCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCC
Confidence            99999999999999 999999999999753221  234679999999999999999999999999999999999997664


Q ss_pred             ccCCceeEeeecCCCCeEEEEecccc
Q 009043          518 VHSPVLVVTLRPQHGLQVIFQPLSVN  543 (546)
Q Consensus       518 ~~~~~~~~~~~~~~~~~v~~~~~~~~  543 (546)
                      +..+  ..+++|.+++++++++|..+
T Consensus       448 ~~~~--~~~~~p~~~~~~~~~~r~~~  471 (472)
T PLN02987        448 KLVF--FPTTRTQKRYPINVKRRDVA  471 (472)
T ss_pred             ceee--cccccCCCCceEEEEecccC
Confidence            4322  35889999999999999764


No 28 
>PLN02936 epsilon-ring hydroxylase
Probab=100.00  E-value=8.7e-66  Score=535.90  Aligned_cols=453  Identities=24%  Similarity=0.382  Sum_probs=359.8

Q ss_pred             CCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcCC
Q 009043           44 GIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNSD  123 (546)
Q Consensus        44 ~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~  123 (546)
                      ..-|-.|||++|..+.+......             +.++..+.+|+++||++|++++|+.++|+++||+++++++.+.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~   79 (489)
T PLN02936         13 LWGDDSGIPVADAKLEDVTDLLG-------------GALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYG   79 (489)
T ss_pred             cCCCCCCCccHHhHHhhHHHHhc-------------cHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhcc
Confidence            55678899999999888764322             46788999999999999999999999999999999999998766


Q ss_pred             CCCCCCCchhHHHHhhcCCccccCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHH-HHHH
Q 009043          124 GTYPKVQAPGFLRKILGDGLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIP-AMVA  202 (546)
Q Consensus       124 ~~~~~~~~~~~~~~~~g~~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  202 (546)
                      ..|.++.........+|+++++.+|+.|+++|+++++.|+.+++.                          .+.+ .+.+
T Consensus        80 ~~f~~~~~~~~~~~~~~~~i~~~~g~~wk~~Rk~l~~~f~~~~l~--------------------------~~~~~~~~~  133 (489)
T PLN02936         80 SKYAKGLVAEVSEFLFGSGFAIAEGELWTARRRAVVPSLHRRYLS--------------------------VMVDRVFCK  133 (489)
T ss_pred             ccccCcchhhhhHHHhcCccccCCchHHHHHHHhhcCccCHHHHH--------------------------HHHHHHHHH
Confidence            678776543434445788888899999999999999999988777                          6544 7788


Q ss_pred             HHHHHHHHhccc--CCceeehHHHHHHHHHHHHhhcccCCCcccc---chHHHHHHHHHHHHHhhhhhhcccccc----c
Q 009043          203 SVEIMLKRWRHS--EGKEIEVSQEFKLLTSEIISRTAFGSSYLEG---ESIFNKLTNMSFLASRNAYKIKIPLIG----D  273 (546)
Q Consensus       203 ~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~----~  273 (546)
                      +++.+++.+.+.  ++.++|+.+.+..+++++++.++||.+++..   .+..+.+......... .....+|.+.    .
T Consensus       134 ~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~l~  212 (489)
T PLN02936        134 CAERLVEKLEPVALSGEAVNMEAKFSQLTLDVIGLSVFNYNFDSLTTDSPVIQAVYTALKEAET-RSTDLLPYWKVDFLC  212 (489)
T ss_pred             HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHcCCCccccccCcHHHHHHHHHHHHHHH-hhhccchHHhhHHHh
Confidence            889898888654  4568999999999999999999999998632   2233333332221111 1111223210    1


Q ss_pred             cccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Q 009043          274 FVKTSDDVEGDKLEQGIRDSIIKMMKTREEKALKGES--------EGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKT  345 (546)
Q Consensus       274 ~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~--------~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~  345 (546)
                      ++ ....+...++.+.+.+.+.+.++++++...+...        .....|+++.+++..      ..++++++.+++..
T Consensus       213 ~~-~p~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~------~~~~~~~i~~~~~~  285 (489)
T PLN02936        213 KI-SPRQIKAEKAVTVIRETVEDLVDKCKEIVEAEGEVIEGEEYVNDSDPSVLRFLLASR------EEVSSVQLRDDLLS  285 (489)
T ss_pred             cc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCchHHHHHHHhcc------ccCCHHHHHHHHHH
Confidence            11 1123456677788888888888877654332110        013468899888643      14789999999999


Q ss_pred             HHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCCCCCCccccCCChhHHHHHHhhhcCCCCCCCc-ceeecccc
Q 009043          346 FYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQKNPAPDGIGKLKTMSMVINESLRLYPPAVNI-SRNVEREV  424 (546)
Q Consensus       346 ~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~-~r~~~~d~  424 (546)
                      +++||+|||+++++|++++|++||++|+|+|+||++++++..++++++++||||+|||+||||++|+++.. +|.+.+|+
T Consensus       286 ~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~  365 (489)
T PLN02936        286 MLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQGRPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDV  365 (489)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCcc
Confidence            99999999999999999999999999999999999999876789999999999999999999999999887 66666777


Q ss_pred             ccCCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccc-cCCCCCcccccCCCCCCCcchHHHHHHHHHHHH
Q 009043          425 RLGKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKA-SNNTPAAFLPFSSGPRICVGLNFAATEAKIALS  503 (546)
Q Consensus       425 ~l~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~-~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~  503 (546)
                      .++||.||+||.|+++.+++||||++| +||++|+||||++++... ....+..++|||.|+|.|+|++||++|++++++
T Consensus       366 ~~~g~~Ip~Gt~v~~~~~~~~rd~~~~-~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la  444 (489)
T PLN02936        366 LPGGYKVNAGQDIMISVYNIHRSPEVW-ERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALA  444 (489)
T ss_pred             ccCCeEECCCCEEEecHHhccCChhhC-CCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999999999999 899999999999643211 112345899999999999999999999999999


Q ss_pred             HHHhhceEEeCCCCccCCceeEeeecCCCCeEEEEeccccc
Q 009043          504 MILQRYRFNLSPSYVHSPVLVVTLRPQHGLQVIFQPLSVNQ  544 (546)
Q Consensus       504 ~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  544 (546)
                      +|+++|+++++++.+......++.+|.++++|++++|.++-
T Consensus       445 ~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~~~  485 (489)
T PLN02936        445 VLLQRLDLELVPDQDIVMTTGATIHTTNGLYMTVSRRRVPD  485 (489)
T ss_pred             HHHHhCeEEecCCCccceecceEEeeCCCeEEEEEeeeCCC
Confidence            99999999988764433333467789999999999997763


No 29 
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00  E-value=7.2e-64  Score=520.77  Aligned_cols=417  Identities=19%  Similarity=0.282  Sum_probs=329.1

Q ss_pred             hhHHHHHHHHhC-CcEEEcccCccEEEeCCHHHHHHHHhcCCCCCCCCCch-hHHHHhhcCCccccCCchHHHhhhhccc
Q 009043           83 LPHICSWTKQYG-MNFLTWYGSRAQLVITQPELIKEILSNSDGTYPKVQAP-GFLRKILGDGLVTAGGENWHRQRKLATL  160 (546)
Q Consensus        83 ~~~~~~~~~kyG-~v~~~~~g~~~~vvv~~p~~~~~il~~~~~~~~~~~~~-~~~~~~~g~~l~~~~g~~w~~~R~~~~~  160 (546)
                      .+++..+.++++ .+++++..+.  ++++||+.+++++.++...|.++... ..+..++|+|+++.+|+.|+++|+.+++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g~gi~~~~g~~wk~~Rk~l~~  140 (502)
T PLN02426         63 CDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLLGRGIFNVDGDSWRFQRKMASL  140 (502)
T ss_pred             HHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcCCceeecCcHHHHHHHHHhHh
Confidence            445556777777 4777766554  89999999999998776678777533 3455677899999999999999999999


Q ss_pred             cCChhhhhhhcchhhhhhhhHHHHHhhhcccccccc--HHHHHHHHHHHHHHhccc----CCceeehHHHHHHHHHHHHh
Q 009043          161 AFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDM--IPAMVASVEIMLKRWRHS----EGKEIEVSQEFKLLTSEIIS  234 (546)
Q Consensus       161 ~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~----~~~~vdl~~~~~~~~~~vi~  234 (546)
                      .|+.++++                          .+  .+.+++.++.+++.+...    .+.++|+.+.+..+++|+++
T Consensus       141 ~fs~~~l~--------------------------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~  194 (502)
T PLN02426        141 ELGSVSIR--------------------------SYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNIC  194 (502)
T ss_pred             hhhhHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHH
Confidence            99998887                          44  356666667777666532    24679999999999999999


Q ss_pred             hcccCCCcccc------chHHHHHHHHHHHHHhhhhhhccccc---cccccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009043          235 RTAFGSSYLEG------ESIFNKLTNMSFLASRNAYKIKIPLI---GDFVKTSDDVEGDKLEQGIRDSIIKMMKTREEKA  305 (546)
Q Consensus       235 ~~~fG~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~  305 (546)
                      .++||.+++..      .+....+.......... .....|++   .++++....++..+..+.+.+++.++|+++++..
T Consensus       195 ~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~  273 (502)
T PLN02426        195 KFSFGLDPGCLELSLPISEFADAFDTASKLSAER-AMAASPLLWKIKRLLNIGSERKLKEAIKLVDELAAEVIRQRRKLG  273 (502)
T ss_pred             HHHhCCCCcccCCCCCccHHHHHHHHHHHHHHHH-HhcchhHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999987522      12223222222111111 01111222   1233333345667788889999999998876542


Q ss_pred             hcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCC
Q 009043          306 LKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQ  385 (546)
Q Consensus       306 ~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~  385 (546)
                      .   +  ...|+++.+++..        .+++++.+++.++++||+|||+++++|++++|++||++|+|+|+||+++.++
T Consensus       274 ~---~--~~~dll~~ll~~~--------~~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~  340 (502)
T PLN02426        274 F---S--ASKDLLSRFMASI--------NDDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGP  340 (502)
T ss_pred             c---C--CcchHHHHHHhcC--------CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC
Confidence            1   1  3579999999753        2578999999999999999999999999999999999999999999999874


Q ss_pred             --CCCCccccCCChhHHHHHHhhhcCCCCCCCcceeecccccc-CCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCC
Q 009043          386 --KNPAPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRL-GKYILPANMELVIPILAIHHDPQIWGEDVDLFKPER  462 (546)
Q Consensus       386 --~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~~r~~~~d~~l-~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~R  462 (546)
                        ..++++++++||||+|||+|+||++|++|...|.+.+|.++ +|+.|||||.|.++.+++||||++|||||++|+|||
T Consensus       341 ~~~~~t~~~l~~LpYl~avi~EtLRl~p~v~~~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeR  420 (502)
T PLN02426        341 NQEAASFEEMKEMHYLHAALYESMRLFPPVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPER  420 (502)
T ss_pred             CCCCCCHHHHhcChHHHHHHHHHHhCCCCCCCcceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccc
Confidence              35899999999999999999999999999988999999887 999999999999999999999999999999999999


Q ss_pred             CCCCcccccCCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHhhceEEeCCCCc--cCCceeEeeecCCCCeEEEEec
Q 009043          463 FADGVAKASNNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQRYRFNLSPSYV--HSPVLVVTLRPQHGLQVIFQPL  540 (546)
Q Consensus       463 fl~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~  540 (546)
                      |++++ ......+..++|||+|+|.|+|+++|.+|++++++.|+++|++++.++..  .....+.+++|++|++|++++|
T Consensus       421 wl~~~-~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~r  499 (502)
T PLN02426        421 WLKNG-VFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNRAPRFAPGLTATVRGGLPVRVRER  499 (502)
T ss_pred             cCCCC-CcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCCCCCcccceeEEecCCCEEEEEEEc
Confidence            99742 11112456799999999999999999999999999999999999864322  2333457899999999999998


Q ss_pred             cc
Q 009043          541 SV  542 (546)
Q Consensus       541 ~~  542 (546)
                      .+
T Consensus       500 ~~  501 (502)
T PLN02426        500 VR  501 (502)
T ss_pred             cC
Confidence            64


No 30 
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=3e-62  Score=464.67  Aligned_cols=439  Identities=18%  Similarity=0.274  Sum_probs=362.9

Q ss_pred             CCCCCCC-CCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcC
Q 009043           44 GIRGPAY-RLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNS  122 (546)
Q Consensus        44 ~~Pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~  122 (546)
                      .||--.+ .||+|+...|..                  ++..+++++++|||+||++.++|+.+.++.+|+....+++++
T Consensus        32 ~PPli~gwiP~lG~a~~fgk------------------~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~   93 (486)
T KOG0684|consen   32 EPPLIKGWIPWLGSALAFGK------------------DPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAK   93 (486)
T ss_pred             CCcccccCcchhhHHHHhcc------------------CHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCc
Confidence            5676665 599999999974                  679999999999999999999999999999999999999877


Q ss_pred             CCCCCCCCch-hHHHHhhcCCccc-cCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHHH
Q 009043          123 DGTYPKVQAP-GFLRKILGDGLVT-AGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPAM  200 (546)
Q Consensus       123 ~~~~~~~~~~-~~~~~~~g~~l~~-~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (546)
                      ...++-...+ ......||.|+.. .++....++.+.+...+...+++                          ++.+.+
T Consensus        94 ~~~ld~~~~~~~l~~~vFg~~v~~d~~~~~~~e~~~~~k~~L~~~~lk--------------------------~~~e~m  147 (486)
T KOG0684|consen   94 LADLDFEEAYSKLTTPVFGKGVVYDVPNHVMMEQKKFFKSALGGVALK--------------------------SLVELM  147 (486)
T ss_pred             ccccCHHHHHHHhhhhhcCCCccccCCCchHHHHHHHHHHHhchhhHH--------------------------HHHHHH
Confidence            5455444322 4566778888664 46888889999999999999999                          999999


Q ss_pred             HHHHHHHHHH-hcccCCceeehHHHHHHHHHHHHhhcccCCCccc-cchHHHHHHHHHHHHHhhhhhhccccccccccCC
Q 009043          201 VASVEIMLKR-WRHSEGKEIEVSQEFKLLTSEIISRTAFGSSYLE-GESIFNKLTNMSFLASRNAYKIKIPLIGDFVKTS  278 (546)
Q Consensus       201 ~~~~~~l~~~-l~~~~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  278 (546)
                      .++..+..+. +.+ ++..-.+..+...+.+.+.-.+.||..... +++....+.+....+..  ....+|.   ++|..
T Consensus       148 ~~el~~~f~~~~~~-s~~~d~l~~~~~~ii~tAs~~ll~~e~r~~~d~~~a~l~~dLd~~F~~--~d~~FP~---~LP~~  221 (486)
T KOG0684|consen  148 LEELHAYFETSLGE-SGETDGLYTFCRLIIFTASRLLLGGEVRDQLDADVAKLYHDLDQGFQP--FDFLFPY---NLPIP  221 (486)
T ss_pred             HHHHHHHHhccccc-ccchhHhhhhhHHHhhhhHHHhhhhhhhhhhcchHHHHHHHHhccccc--hHhhccc---CCCcc
Confidence            9999998887 555 566777888888888888888888876554 33333333333222211  2334453   56666


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhhcccHHHHH
Q 009043          279 DDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHETTTKLL  358 (546)
Q Consensus       279 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~dtt~~~l  358 (546)
                      ..+...++++.+.+.....+.++++..++     ..+|+++.+++...+   +...+++|+....+.+++||+.||+.|.
T Consensus       222 ~~r~~~ra~~~i~k~f~~~i~~rr~s~s~-----~~~dmlq~l~~~y~d---g~~~te~e~a~~li~~LwA~Q~ns~pts  293 (486)
T KOG0684|consen  222 LLRRRDRARKKISKIFSKIILDRRASISK-----WDNDMLQSLMEKYKD---GRPTTEEEIAGLLIGLLWAGQHNSSPTS  293 (486)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcccc-----ccHHHHHHHHHHhhc---CCcCcHHHHHHHHHHHHHhccccccHHH
Confidence            66777799999999999999998876443     557999999984443   3578899999999999999999999999


Q ss_pred             HHHHHHHccChHHHHHHHHHHHHHhCC--CCCCccccCCChhHHHHHHhhhcCCCCCCCcceeeccccccCC----eeeC
Q 009043          359 TWTILLLATHTDWQEKLREEVLELFGQ--KNPAPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGK----YILP  432 (546)
Q Consensus       359 ~~~l~~L~~~P~~~~~lr~Ei~~~~~~--~~~~~~~~~~lp~l~a~i~EtlRl~p~~~~~~r~~~~d~~l~g----~~ip  432 (546)
                      +|++++|++|||+++.+++|+.+++|+  ...+.++++++|+|++||+|||||+||.+...|.+.+|.++.+    |.||
T Consensus       294 fW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~~~IkEtLRL~~p~~~~~R~v~~D~tv~~~~~~Y~Ip  373 (486)
T KOG0684|consen  294 FWTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLDSCIKETLRLHPPAHSLMRKVHEDLTVPGSDGEYVIP  373 (486)
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHHHHHHHHHhcCCchhhHHHhhccceeeccCCcceecC
Confidence            999999999999999999999999994  3389999999999999999999999999999999999999965    9999


Q ss_pred             CCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccc---cCCCCCcccccCCCCCCCcchHHHHHHHHHHHHHHHhhc
Q 009043          433 ANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKA---SNNTPAAFLPFSSGPRICVGLNFAATEAKIALSMILQRY  509 (546)
Q Consensus       433 ~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~---~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f  509 (546)
                      +|..|.++...+|+||++| +||+.|+||||+++++.+   ...-.+.++|||.|+|.|||++||.+|++.++..+|++|
T Consensus       374 ~G~~valsP~~~hr~peif-~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~f  452 (486)
T KOG0684|consen  374 KGDIVALSPFLLHRDPEIF-PDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHF  452 (486)
T ss_pred             CCCEEEeccccccCCcccc-CChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999 999999999999765544   112345679999999999999999999999999999999


Q ss_pred             eEEeCCCCccC-CceeEeeecCCCCeEEEEecc
Q 009043          510 RFNLSPSYVHS-PVLVVTLRPQHGLQVIFQPLS  541 (546)
Q Consensus       510 ~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~  541 (546)
                      |+|+.++..++ -....+.-|.++++++++.|+
T Consensus       453 dleLid~~~P~~d~s~~v~~P~g~v~irYK~R~  485 (486)
T KOG0684|consen  453 DLELIDGPFPEVDYSRMVMQPEGDVRIRYKRRP  485 (486)
T ss_pred             ceeecCCCCCCCCHHHhhcCCCCCceEEEeecC
Confidence            99999863332 234568899999999999986


No 31 
>PLN02648 allene oxide synthase
Probab=100.00  E-value=1.9e-55  Score=450.85  Aligned_cols=402  Identities=12%  Similarity=0.132  Sum_probs=298.0

Q ss_pred             cCCCCCCCCCCCCCHHHHHHHhhhhccCCCCCCcccccchhhHHHHHHHHhCC-cEEEcccCccE-------EEeCCHHH
Q 009043           43 QGIRGPAYRLVYGNTKEILSLRNQIWISPMGLSHDILPRILPHICSWTKQYGM-NFLTWYGSRAQ-------LVITQPEL  114 (546)
Q Consensus        43 ~~~Pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kyG~-v~~~~~g~~~~-------vvv~~p~~  114 (546)
                      +.|||+.|||++|++++|.+.-.             ..++..|+.+.++|||+ ||+++++|.|+       |+++||++
T Consensus        17 ~~PPg~~g~P~iG~~~~~~~~~~-------------~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~   83 (480)
T PLN02648         17 REIPGSYGLPFLGAIKDRLDYFY-------------FQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKS   83 (480)
T ss_pred             CCCCCCCCCcCcchhhhhhhHHH-------------hcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCc
Confidence            36899999999999998875221             13456899999999999 99999998666       99999999


Q ss_pred             HHHHHhc----CCCCCCCCCchhHHHHhhc-C---CccccCCchHHHhhhhccccCChhhhhhhcchhhhhhhhHHHHHh
Q 009043          115 IKEILSN----SDGTYPKVQAPGFLRKILG-D---GLVTAGGENWHRQRKLATLAFYAESLRVTKSNCLMFKLKSVIVML  186 (546)
Q Consensus       115 ~~~il~~----~~~~~~~~~~~~~~~~~~g-~---~l~~~~g~~w~~~R~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~  186 (546)
                      ++.+|.+    ++..+.. .+..... ++| +   +++..+|+.|+++|+++.+.|+ ..++                  
T Consensus        84 ~~~v~~~~~~~~~~~~~~-~~~~~~~-l~G~~~~~s~~~~~g~~H~r~Rrll~~~f~-~~~~------------------  142 (480)
T PLN02648         84 FPVLFDVSKVDKRDVFTG-TYMPSTA-FTGGYRVLSYLDPSEPKHAKLKSFLFELLK-SRHR------------------  142 (480)
T ss_pred             eeeeecchhcccccccee-eeccCcc-ccCCceeeeecCCCCchHHHHHHHHHHHHH-Hhhh------------------
Confidence            9999975    4433443 2333444 677 4   6677789999999999999998 4667                  


Q ss_pred             hhccccccccHHHHHHHHHHHHHHhccc--CCceeehHHHHHHHHHHHHhhcccCCCccccchHHHHHHHHHHHHHhhhh
Q 009043          187 FNVFAPMQDMIPAMVASVEIMLKRWRHS--EGKEIEVSQEFKLLTSEIISRTAFGSSYLEGESIFNKLTNMSFLASRNAY  264 (546)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~  264 (546)
                              .+.+.+++.++++++.|...  .++++|+.+.+++++++++++++||.+.+. +.....+.........   
T Consensus       143 --------~~~~~m~~~~~~~~~~w~~~~~~~~~vdv~~~~~~lt~~vi~~~lfG~~~~~-~~l~~~~~~~~~~~~~---  210 (480)
T PLN02648        143 --------RFIPEFRAAFAELFDTWEAELAKKGKAEFNDPLDQMAFNFLCKALTGKDPSE-TALGSDGPALIQKWLA---  210 (480)
T ss_pred             --------hhhhHHHHHHHHHHHHHHHHHhhCCCccccchHHHHHHHHHHHHHcCCCcch-hhhccchhHHHHHHHH---
Confidence                    89999999999999999542  355799999999999999999999987653 1111111111111100   


Q ss_pred             hhccccccccccCCchh-----------hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHcCCCCCCCC
Q 009043          265 KIKIPLIGDFVKTSDDV-----------EGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDYFGLLLKAYHDPDMTKR  333 (546)
Q Consensus       265 ~~~~p~~~~~l~~~~~~-----------~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~  333 (546)
                      ...+|.....++.....           ...+..+.+.+.+.+.                    ++.+++...+    .+
T Consensus       211 ~~~~p~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ll~~~~~----~~  266 (480)
T PLN02648        211 LQLAPLASTGLPHVLEELLLHTFPLPFFLVKSDYDKLYDFFRAS--------------------ATEALDLAEK----FG  266 (480)
T ss_pred             HHhhHHHHcCchHHHHHHhhcccCCchhhhhccHHHHHHHHHHH--------------------HHHHHHHHHh----cC
Confidence            00111110000000000           0001111111111111                    1223322222    24


Q ss_pred             CCHHHHHHHHHH-HHHhhcccHHHHHHHHHHHHccChH-HHHHHHHHHHHHhC--CCCCCccccCCChhHHHHHHhhhcC
Q 009043          334 ISLDVLIDECKT-FYIAGHETTTKLLTWTILLLATHTD-WQEKLREEVLELFG--QKNPAPDGIGKLKTMSMVINESLRL  409 (546)
Q Consensus       334 l~~~~i~~~~~~-~~~ag~dtt~~~l~~~l~~L~~~P~-~~~~lr~Ei~~~~~--~~~~~~~~~~~lp~l~a~i~EtlRl  409 (546)
                      ++++|++++++. +.+++++|++++++|++++|++||+ +|+|+|+||+++.+  +..++++++++||||++|++|+||+
T Consensus       267 l~~~ei~~~~l~~~~~~t~~~~~~~l~~~l~~L~~~p~~v~~klr~Ei~~~~~~~~~~~t~~~l~~l~yl~avi~EtLRl  346 (480)
T PLN02648        267 ISREEALHNLLFVLGFNAFGGFKIFFPALLKWVGRAGEELQARLAEEVRSAVKAGGGGVTFAALEKMPLVKSVVYEALRI  346 (480)
T ss_pred             CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCCCHHHHhcCHHHHHHHHHHHhh
Confidence            899999999875 4466777888899999999999995 99999999999986  3568999999999999999999999


Q ss_pred             CCCCCCcceeeccccccC----CeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCccccc----
Q 009043          410 YPPAVNISRNVEREVRLG----KYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAAFLPF----  481 (546)
Q Consensus       410 ~p~~~~~~r~~~~d~~l~----g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~~F----  481 (546)
                      +|++++..|.+.+|++++    ||.||||+.|+++.+++||||++| +||++|+|+||++++..    ....+++|    
T Consensus       347 ~p~v~~~~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~-~dP~~F~PeRf~~~~~~----~~~~~~~f~~g~  421 (480)
T PLN02648        347 EPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVF-DRPEEFVPDRFMGEEGE----KLLKYVFWSNGR  421 (480)
T ss_pred             cCCcccccceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccC-CCcceeCCCCCCCCCcc----ccccccccCCCc
Confidence            999999989999999995    799999999999999999999999 99999999999874221    11233444    


Q ss_pred             -----CCCCCCCcchHHHHHHHHHHHHHHHhhce-EEeCCCCcc
Q 009043          482 -----SSGPRICVGLNFAATEAKIALSMILQRYR-FNLSPSYVH  519 (546)
Q Consensus       482 -----g~G~r~C~G~~~A~~~~~~~l~~ll~~f~-~~~~~~~~~  519 (546)
                           |.|+|.|+|++||+.|++++++.|+++|+ +++.++..+
T Consensus       422 ~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~~~  465 (480)
T PLN02648        422 ETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDTSG  465 (480)
T ss_pred             ccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCccc
Confidence                 67789999999999999999999999998 999876444


No 32 
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00  E-value=8.2e-52  Score=419.10  Aligned_cols=377  Identities=29%  Similarity=0.426  Sum_probs=311.0

Q ss_pred             HHHHHHHHhCCcEEEcccCcc--EEEeCCHHHHHHHHhcCCCCCCCCC----chhHHHHhhcCC-ccccCCchHHHhhhh
Q 009043           85 HICSWTKQYGMNFLTWYGSRA--QLVITQPELIKEILSNSDGTYPKVQ----APGFLRKILGDG-LVTAGGENWHRQRKL  157 (546)
Q Consensus        85 ~~~~~~~kyG~v~~~~~g~~~--~vvv~~p~~~~~il~~~~~~~~~~~----~~~~~~~~~g~~-l~~~~g~~w~~~R~~  157 (546)
                      ....+.+.||.++..+..+..  ++++++|+.+++++.++. .+++..    ........+|.+ +++.||+.|.++|++
T Consensus        27 ~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~Rkl  105 (411)
T COG2124          27 FLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRLRKL  105 (411)
T ss_pred             hHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhccccceeecCCHHHHHHHHH
Confidence            344566778888877765543  899999999999998864 222222    111245666766 788999999999999


Q ss_pred             ccccCChhhhhhhcchhhhhhhhHHHHHhhhccccccccHHHHHHHHHHHHHHhcccCCceeehHHHHHHHHHHHHhhcc
Q 009043          158 ATLAFYAESLRVTKSNCLMFKLKSVIVMLFNVFAPMQDMIPAMVASVEIMLKRWRHSEGKEIEVSQEFKLLTSEIISRTA  237 (546)
Q Consensus       158 ~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~vi~~~~  237 (546)
                      +++.|+++.++                          .+.+.+.+.++++++.+ ... ..+++.+....++.++++ .+
T Consensus       106 ~~~~F~~~~~~--------------------------~~~~~i~~~~~~~~~~~-~~~-~~~~v~~~a~~l~~~vi~-~l  156 (411)
T COG2124         106 LAPAFTPRALR--------------------------GYRPLIREIADRLLDDL-WQG-GADLVLDFAAELTLRVIA-EL  156 (411)
T ss_pred             hccccCHHHHH--------------------------HHHHHHHHHHHHHHHhc-ccC-CchhHHHHhhhhhHHHHH-HH
Confidence            99999999999                          99999999999999999 433 788899999999999999 99


Q ss_pred             cCCCccccchHHHHHHHHHHHHHhhhhhhccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcH
Q 009043          238 FGSSYLEGESIFNKLTNMSFLASRNAYKIKIPLIGDFVKTSDDVEGDKLEQGIRDSIIKMMKTREEKALKGESEGYGNDY  317 (546)
Q Consensus       238 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~  317 (546)
                      ||.+.++..............        ..|   ...+.....+..++.+.+.+++.++|++++..        ..+|+
T Consensus       157 ~Gv~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~a~~~~~~~~~~li~~rR~~--------~~~dl  217 (411)
T COG2124         157 LGVPLEDRPQLLRWSDALLLR--------LDP---DLGPEEPWRRARAARRELDAYLRALIAERRAA--------PRDDL  217 (411)
T ss_pred             hCCCHHHHHHHHHHHHHHHhc--------cCc---ccCCcccHHHHHHHHHHHHHHHHHHHHHhccC--------CcccH
Confidence            999987544433333222211        002   12222336678899999999999999999832        67899


Q ss_pred             HHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHccChHHHHHHHHHHHHHhCCCCCCccccCCCh
Q 009043          318 FGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHETTTKLLTWTILLLATHTDWQEKLREEVLELFGQKNPAPDGIGKLK  397 (546)
Q Consensus       318 l~~ll~~~~~~~~~~~l~~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~~lr~Ei~~~~~~~~~~~~~~~~lp  397 (546)
                      ++.++...+++  +..+|++|+.++++.+++||+|||+++|+|+++.|++||++++++++|.+.               |
T Consensus       218 ls~l~~a~~~~--~~~lsd~Ei~~~~~~ll~AGheTTa~~l~~a~~~L~~~P~~~~~l~~e~~~---------------~  280 (411)
T COG2124         218 LSLLLSAEDDG--GGRLSDDEIRDELITLLVAGHETTANALAWALYALLRHPDQLAKLRAEPDR---------------P  280 (411)
T ss_pred             HHHHHHHhhCC--CCcCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCchHHHHHHhCcch---------------H
Confidence            99999887765  226999999999999999999999999999999999999999999999653               8


Q ss_pred             hHHHHHHhhhcCCCCCCCcceeeccccccCCeeeCCCCEEEecchhhhcCCCCcCCCCCCccCCCCCCCcccccCCCCCc
Q 009043          398 TMSMVINESLRLYPPAVNISRNVEREVRLGKYILPANMELVIPILAIHHDPQIWGEDVDLFKPERFADGVAKASNNTPAA  477 (546)
Q Consensus       398 ~l~a~i~EtlRl~p~~~~~~r~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~  477 (546)
                      |++++++|+||++||++..+|.+.+|++++|+.||||+.|+++++++||||++| +||++|+|+||.           ..
T Consensus       281 ~~~~~v~E~LR~~ppv~~~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f-~~P~~F~p~R~~-----------~~  348 (411)
T COG2124         281 LLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVF-PDPDEFDPERFN-----------NA  348 (411)
T ss_pred             HHHHHHHHHHHhCCchhccceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhC-CChhhcCCCCCC-----------CC
Confidence            999999999999999999999999999999999999999999999999999999 899999999996           45


Q ss_pred             ccccCCCCCCCcchHHHHHHHHHHHHHHHhhceEEeCCCCccCCceeEeeecCCCCeEEEEec
Q 009043          478 FLPFSSGPRICVGLNFAATEAKIALSMILQRYRFNLSPSYVHSPVLVVTLRPQHGLQVIFQPL  540 (546)
Q Consensus       478 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  540 (546)
                      ++|||+|+|.|+|.+||++|++++++.|+++|++....+ ........+..+..+..+.++.+
T Consensus       349 ~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~-~~~~~~~~~~~~~g~~~l~v~~~  410 (411)
T COG2124         349 HLPFGGGPHRCLGAALARLELKVALAELLRRFPLLLLAE-PPPLVRRPTLVPRGGERLPVRRR  410 (411)
T ss_pred             CcCCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcCC-CCCccccccccCCCcceeeeecC
Confidence            999999999999999999999999999999999876655 23233456677777777777754


No 33 
>PF05952 ComX:  Bacillus competence pheromone ComX;  InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible.  DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=41.31  E-value=22  Score=24.55  Aligned_cols=19  Identities=26%  Similarity=0.272  Sum_probs=16.1

Q ss_pred             HHHHHHccChHHHHHHHHH
Q 009043          360 WTILLLATHTDWQEKLREE  378 (546)
Q Consensus       360 ~~l~~L~~~P~~~~~lr~E  378 (546)
                      -++.+|.+||++.+++.+.
T Consensus         4 ~iV~YLv~nPevl~kl~~g   22 (57)
T PF05952_consen    4 EIVNYLVQNPEVLEKLKEG   22 (57)
T ss_pred             HHHHHHHHChHHHHHHHcC
Confidence            3567899999999999875


No 34 
>PF08492 SRP72:  SRP72 RNA-binding domain;  InterPro: IPR013699  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=33.54  E-value=30  Score=24.17  Aligned_cols=8  Identities=38%  Similarity=0.709  Sum_probs=6.6

Q ss_pred             cCCCCCCC
Q 009043          459 KPERFADG  466 (546)
Q Consensus       459 ~P~Rfl~~  466 (546)
                      ||||||.-
T Consensus        44 DPERWLP~   51 (59)
T PF08492_consen   44 DPERWLPK   51 (59)
T ss_pred             CccccCch
Confidence            78999964


No 35 
>PF09201 SRX:  SRX;  InterPro: IPR015284  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel.  This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=33.36  E-value=33  Score=28.41  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=16.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHhh
Q 009043          487 ICVGLNFAATEAKIALSMILQR  508 (546)
Q Consensus       487 ~C~G~~~A~~~~~~~l~~ll~~  508 (546)
                      .|.|+.||+.++-.++.+|+..
T Consensus        19 N~~gKKFsE~QiN~FIs~lIts   40 (148)
T PF09201_consen   19 NCLGKKFSETQINAFISHLITS   40 (148)
T ss_dssp             ETTS----HHHHHHHHHHHHHS
T ss_pred             cccchHHHHHHHHHHHHHHhcC
Confidence            6999999999999999999964


No 36 
>PF13625 Helicase_C_3:  Helicase conserved C-terminal domain
Probab=32.79  E-value=1.5e+02  Score=24.51  Aligned_cols=41  Identities=29%  Similarity=0.562  Sum_probs=31.4

Q ss_pred             cchhhHHHHHHHHhCCcEEEcccCccEEEeCCHHHHHHHHhcC
Q 009043           80 PRILPHICSWTKQYGMNFLTWYGSRAQLVITQPELIKEILSNS  122 (546)
Q Consensus        80 ~~~~~~~~~~~~kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~  122 (546)
                      ++.-..+.+|.++||.+--  ..+...+...|++.++++..++
T Consensus        74 ~~v~~~i~~w~~~~g~v~l--~~~~~~l~~~d~~~l~~l~~~~  114 (129)
T PF13625_consen   74 QNVEQSIEDWARRYGRVRL--YKGAYLLECDDPELLDELLADP  114 (129)
T ss_pred             HHHHHHHHHHHHhcCCEEE--ecCeEEEEECCHHHHHHHHhCh
Confidence            4566788999999998643  2235578899999999998654


No 37 
>PF12508 DUF3714:  Protein of unknown function (DUF3714) ;  InterPro: IPR022187  Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. 
Probab=28.67  E-value=45  Score=30.03  Aligned_cols=44  Identities=11%  Similarity=0.267  Sum_probs=32.4

Q ss_pred             CChhHHHHHHhhhcCCCCCCCcceeeccccccCCeeeCCCCEEEe
Q 009043          395 KLKTMSMVINESLRLYPPAVNISRNVEREVRLGKYILPANMELVI  439 (546)
Q Consensus       395 ~lp~l~a~i~EtlRl~p~~~~~~r~~~~d~~l~g~~ip~G~~v~~  439 (546)
                      .-..+.|||.|+.-... ...+.=+..+|+.++|..|||||.+.-
T Consensus        51 ~~n~I~A~V~~~qtv~~-Gs~vrlRLle~i~i~g~~IPkgt~l~G   94 (200)
T PF12508_consen   51 EKNTIRAVVDGTQTVVD-GSRVRLRLLEDIQIGGILIPKGTYLYG   94 (200)
T ss_pred             CCCeEEEEEecceEEeC-CCEEEEEEcCceEECCEEeCCCCEEEE
Confidence            34558899999976643 222334567889999999999998864


No 38 
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=27.84  E-value=1.1e+02  Score=21.02  Aligned_cols=7  Identities=43%  Similarity=0.648  Sum_probs=5.1

Q ss_pred             CCCCCCC
Q 009043           44 GIRGPAY   50 (546)
Q Consensus        44 ~~Pgp~~   50 (546)
                      ++|||++
T Consensus        55 GPPGpp~   61 (62)
T COG4459          55 GPPGPPG   61 (62)
T ss_pred             CCCCCCC
Confidence            6788864


No 39 
>PHA02902 putative IMV membrane protein; Provisional
Probab=27.43  E-value=1.6e+02  Score=20.70  Aligned_cols=21  Identities=14%  Similarity=0.248  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 009043           10 ATSCFCLVFFLFIIRLFNKLW   30 (546)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~   30 (546)
                      +++.+++++++++....|+.+
T Consensus         7 vi~~v~v~Ivclliya~YrR~   27 (70)
T PHA02902          7 VILAVIVIIFCLLIYAAYKRY   27 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            333333434333333344333


No 40 
>PF11138 DUF2911:  Protein of unknown function (DUF2911);  InterPro: IPR021314  This bacterial family of proteins has no known function. 
Probab=26.77  E-value=64  Score=27.36  Aligned_cols=42  Identities=21%  Similarity=0.476  Sum_probs=30.3

Q ss_pred             eeccccccCCeeeCCCCEEEecc-------hhhhcCCCCcCCCCCCccCCC
Q 009043          419 NVEREVRLGKYILPANMELVIPI-------LAIHHDPQIWGEDVDLFKPER  462 (546)
Q Consensus       419 ~~~~d~~l~g~~ip~G~~v~~~~-------~~~~~d~~~~g~~p~~F~P~R  462 (546)
                      ...+|+.++|..||+|+.-+..+       ..+|.+...||.  ..+||+.
T Consensus        51 ~f~~dv~igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~--~~Y~~~~   99 (145)
T PF11138_consen   51 TFSKDVTIGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA--YNYDPSK   99 (145)
T ss_pred             EECCCeEECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc--cccCchh
Confidence            45688999999999999887644       245677788863  4555553


No 41 
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=26.72  E-value=30  Score=23.45  Aligned_cols=12  Identities=33%  Similarity=0.567  Sum_probs=10.0

Q ss_pred             ccccCCCCCCCc
Q 009043          478 FLPFSSGPRICV  489 (546)
Q Consensus       478 ~~~Fg~G~r~C~  489 (546)
                      --+||-|.|+|-
T Consensus        11 ~~kfg~GsrsC~   22 (56)
T KOG3506|consen   11 PRKFGQGSRSCR   22 (56)
T ss_pred             ccccCCCCccee
Confidence            357999999996


No 42 
>PF00558 Vpu:  Vpu protein;  InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=24.85  E-value=1e+02  Score=23.16  Aligned_cols=35  Identities=17%  Similarity=0.120  Sum_probs=10.3

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 009043            1 MGSPIILYAATSCFCLVFFLFIIRLFNKLWWIPNR   35 (546)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   35 (546)
                      |-...+..++.+++++++..+++.+++..|.+-++
T Consensus         1 M~~l~i~~iialiv~~iiaIvvW~iv~ieYrk~~r   35 (81)
T PF00558_consen    1 MQSLEILAIIALIVALIIAIVVWTIVYIEYRKIKR   35 (81)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHH---------
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444555556666666655554443


No 43 
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=23.18  E-value=74  Score=23.62  Aligned_cols=16  Identities=6%  Similarity=0.247  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 009043           12 SCFCLVFFLFIIRLFN   27 (546)
Q Consensus        12 ~~~~~~~~~~~~~~~~   27 (546)
                      ++.+.++|++++..+.
T Consensus        10 ~V~V~IVclliya~YR   25 (92)
T PHA02681         10 VIVISIVCYIVIMMYR   25 (92)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444555544443


No 44 
>PF15330 SIT:  SHP2-interacting transmembrane adaptor protein, SIT
Probab=22.39  E-value=1.2e+02  Score=24.27  Aligned_cols=11  Identities=27%  Similarity=0.244  Sum_probs=7.7

Q ss_pred             CCCCCCCHHHH
Q 009043           50 YRLVYGNTKEI   60 (546)
Q Consensus        50 ~~p~~G~~~~~   60 (546)
                      .-|..||+...
T Consensus        45 ~~p~YgNL~~~   55 (107)
T PF15330_consen   45 DDPCYGNLELQ   55 (107)
T ss_pred             CCccccccccc
Confidence            46889997554


No 45 
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=20.48  E-value=2.4e+02  Score=29.16  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=22.2

Q ss_pred             HhCCcEEEcccCccEEEeCCHHHHHHHHhcCCCCCCCCC
Q 009043           92 QYGMNFLTWYGSRAQLVITQPELIKEILSNSDGTYPKVQ  130 (546)
Q Consensus        92 kyG~v~~~~~g~~~~vvv~~p~~~~~il~~~~~~~~~~~  130 (546)
                      +||.||...+-++.+-|=-=|+.=++-+.+..+.|+-+.
T Consensus       222 rfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~lp~  260 (534)
T KOG3653|consen  222 RFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYSLPG  260 (534)
T ss_pred             ccceeehhhccCceeEEEecCHHHHHHHHhHHHHHhccC
Confidence            688888887777655443333333444444444565554


Done!