BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>009045
MEREVYPVPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTSPLVSAPE
LSRLTNEDSNHSSSHHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVD
ADGDQSGLGTSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI
LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR
QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ
DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA
DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPT
EQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAG
AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV
YCSSNL

High Scoring Gene Products

Symbol, full name Information P value
AT5G63200 protein from Arabidopsis thaliana 2.5e-136

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  009045
        (546 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2162027 - symbol:AT5G63200 "AT5G63200" species...  1316  2.5e-136  2


>TAIR|locus:2162027 [details] [associations]
            symbol:AT5G63200 "AT5G63200" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0000956 "nuclear-transcribed
            mRNA catabolic process" evidence=RCA] InterPro:IPR001440
            InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
            Pfam:PF00515 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
            EMBL:CP002688 GenomeReviews:BA000015_GR eggNOG:COG0457
            Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 EMBL:AK176456
            EMBL:AK176469 IPI:IPI00535936 RefSeq:NP_201125.2 UniGene:At.43413
            UniGene:At.8840 ProteinModelPortal:Q67YJ9 SMR:Q67YJ9
            EnsemblPlants:AT5G63200.1 GeneID:836441 KEGG:ath:AT5G63200
            TAIR:At5g63200 HOGENOM:HOG000005912 InParanoid:Q67YJ9 OMA:PIAWAGL
            PhylomeDB:Q67YJ9 ProtClustDB:CLSN2680600 Genevestigator:Q67YJ9
            Uniprot:Q67YJ9
        Length = 649

 Score = 1316 (468.3 bits), Expect = 2.5e-136, Sum P(2) = 2.5e-136
 Identities = 271/479 (56%), Positives = 330/479 (68%)

Query:     8 VPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTS-PLVSAPELSRLTN 66
             + VK E  T +S +  +       KL +LADLN NPPETD D ++S P+ + P ++RL+N
Sbjct:     7 IAVKCEPMTVDSPSRPL-------KLVVLADLNFNPPETD-DLDSSIPIPTPPPITRLSN 58

Query:    67 EDSNXXXXXXDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQS 126
             E+S+       +G IL  KE++  EVE KKI+K+GKCRSR  SK++S+ + GVDADGD +
Sbjct:    59 EESH------QEGGILTCKEVEPGEVEAKKISKVGKCRSR--SKIESSSDCGVDADGDLA 110

Query:   127 GLGTSSSSREEK------GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 180
               G  +S REEK      GL+HVARKMPKNAHAHF+LGLM+QRLGQ  KA+  YEKAEEI
Sbjct:   111 NQGVPAS-REEKISNLKMGLIHVARKMPKNAHAHFILGLMFQRLGQSQKAIPEYEKAEEI 169

Query:   181 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNXXXXXXXXXXXXXXXXXXXXXMQSDTR 240
             LL CE +IARPELL LVQIHH QCLL +  GD                      ++ D R
Sbjct:   170 LLGCEPEIARPELLLLVQIHHGQCLLLDGFGDTDSVKELEGEELEEILSKLKDSIKLDVR 229

Query:   241 QAVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300
             QA VWNTLGL+LLK               A+ P+N DC+ NLG+AY QSGDME SAKCFQ
Sbjct:   230 QAAVWNTLGLMLLKAGCLMSAISVLSSLLALVPDNYDCLANLGVAYLQSGDMELSAKCFQ 289

Query:   301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECXXXXXXX 360
             DL+LKD NHPAALINYAA LLCK+ S +AGAGAN G  A  DQ + +NVAKEC       
Sbjct:   290 DLVLKDHNHPAALINYAAELLCKHSSTVAGAGANGGADASEDQKAPMNVAKECLLAALRS 349

Query:   361 XXXXXHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPT 420
                  H W NLAN+YY+ GDHRSS KCLEKAAKL+PNCM+TR+AVAV RIKDAERSQ+ +
Sbjct:   350 DPKSAHAWVNLANSYYMMGDHRSSSKCLEKAAKLDPNCMATRFAVAVQRIKDAERSQDAS 409

Query:   421 EQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 479
             +QLSWAGNEMAS++REG+ V I+PPIAWAG A   K  HE+AAAF  + NEL++MEE A
Sbjct:   410 DQLSWAGNEMASVIREGESVPIDPPIAWAGLAMAHKAQHEIAAAFVADRNELTEMEERA 468

 Score = 164 (62.8 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 39/88 (44%), Positives = 45/88 (51%)

Query:   454 VQKTHHEVAAAFETEENELSKMEEC-AGAGES----AFLDQASAVNVAKECXXXXXXXXX 508
             V K H+  AA        L K     AGAG +    A  DQ + +NVAKEC         
Sbjct:   292 VLKDHNHPAALINYAAELLCKHSSTVAGAGANGGADASEDQKAPMNVAKECLLAALRSDP 351

Query:   509 XXXHIWANLANAYYLTGDHRSSGKCLEK 536
                H W NLAN+YY+ GDHRSS KCLEK
Sbjct:   352 KSAHAWVNLANSYYMMGDHRSSSKCLEK 379

 Score = 40 (19.1 bits), Expect = 2.5e-136, Sum P(2) = 2.5e-136
 Identities = 7/29 (24%), Positives = 16/29 (55%)

Query:   512 HIWANLANAYYLTGDHRSSGKCLEKVLMV 540
             + W+NL  +  L+ +H  + +  ++ L V
Sbjct:   518 YAWSNLGISLQLSDEHSEAEEVYKRALTV 546


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      546       480   0.00079  119 3  11 23  0.45    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  280 KB (2145 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.92u 0.14s 38.06t   Elapsed:  00:00:02
  Total cpu time:  37.92u 0.14s 38.06t   Elapsed:  00:00:02
  Start:  Mon May 20 19:31:32 2013   End:  Mon May 20 19:31:34 2013

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