BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009045
         (546 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 125

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 22/143 (15%)

Query: 270 AVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 328
           A+DP N+ +   NLG AY++ GD +++ + +Q  +  D N+  A  N            L
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN------------L 49

Query: 329 AGAGANTGEGACLDQASAVNVAKECXXXXXXXXXXXXHIWANLANAYYLTGDHRSSGKCL 388
             A    G+          + A E               W NL NAYY  GD+  + +  
Sbjct: 50  GNAYYKQGD---------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 100

Query: 389 EKAAKLEPNCMSTRYAVAVSRIK 411
           +KA +L+PN    +  +  ++ K
Sbjct: 101 QKALELDPNNAEAKQNLGNAKQK 123



 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 35/81 (43%)

Query: 235 MQSDTRQAVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQ 294
           ++ D   A  W  LG    K                +DPNN +   NLG AY++ GD ++
Sbjct: 36  LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95

Query: 295 SAKCFQDLILKDQNHPAALIN 315
           + + +Q  +  D N+  A  N
Sbjct: 96  AIEYYQKALELDPNNAEAKQN 116



 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 32/74 (43%)

Query: 242 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
           A  W  LG    K                +DPNN +   NLG AY++ GD +++ + +Q 
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 302 LILKDQNHPAALIN 315
            +  D N+  A  N
Sbjct: 69  ALELDPNNAEAWYN 82



 Score = 36.6 bits (83), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417
           W NL NAYY  GD+  + +  +KA +L+PN     Y +  +  K  +  +
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61



 Score = 36.6 bits (83), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417
           W NL NAYY  GD+  + +  +KA +L+PN     Y +  +  K  +  +
Sbjct: 46  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95


>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Trigonal Crystal Form)
 pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Orthorombic Crystal Form)
          Length = 136

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 21/155 (13%)

Query: 242 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
           A  W  LG    K                +DP + +   NLG AY++ GD +++ + +Q 
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECXXXXXXXX 361
            +  D     A  N            L  A    G+          + A E         
Sbjct: 61  ALELDPRSAEAWYN------------LGNAYYKQGD---------YDEAIEYYQKALELD 99

Query: 362 XXXXHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396
                 W NL NAYY  GD+  + +  +KA +L+P
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134



 Score = 38.1 bits (87), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 21/136 (15%)

Query: 276 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 335
            +   NLG AY++ GD +++ + +Q  +  D     A  N            L  A    
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN------------LGNAYYKQ 48

Query: 336 GEGACLDQASAVNVAKECXXXXXXXXXXXXHIWANLANAYYLTGDHRSSGKCLEKAAKLE 395
           G+          + A E               W NL NAYY  GD+  + +  +KA +L+
Sbjct: 49  GD---------YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99

Query: 396 PNCMSTRYAVAVSRIK 411
           P      Y +  +  K
Sbjct: 100 PRSAEAWYNLGNAYYK 115



 Score = 38.1 bits (87), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 33/81 (40%)

Query: 235 MQSDTRQAVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQ 294
           ++ D R A  W  LG    K                +DP + +   NLG AY++ GD ++
Sbjct: 28  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87

Query: 295 SAKCFQDLILKDQNHPAALIN 315
           + + +Q  +  D     A  N
Sbjct: 88  AIEYYQKALELDPRSAEAWYN 108



 Score = 37.4 bits (85), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 29/66 (43%)

Query: 235 MQSDTRQAVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQ 294
           ++ D R A  W  LG    K                +DP + +   NLG AY++ GD ++
Sbjct: 62  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121

Query: 295 SAKCFQ 300
           + + +Q
Sbjct: 122 AIEYYQ 127



 Score = 34.7 bits (78), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 56/171 (32%), Gaps = 44/171 (25%)

Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG 427
           W NL NAYY  GD+  + +  +KA +L+P      Y +  +  K  +  +          
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE---------A 54

Query: 428 NEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFL 487
            E      E DP   E   AW           +   A E  +  L              L
Sbjct: 55  IEYYQKALELDPRSAE---AWYNLGNAYYKQGDYDEAIEYYQKALE-------------L 98

Query: 488 DQASAVNVAKECXXXXXXXXXXXXHIWANLANAYYLTGDHRSSGKCLEKVL 538
           D  SA                     W NL NAYY  GD+  + +  +K L
Sbjct: 99  DPRSA-------------------EAWYNLGNAYYKQGDYDEAIEYYQKAL 130


>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
          Length = 125

 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 22/134 (16%)

Query: 270 AVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 328
           A+DP N+ +   NLG AY++ GD +++ + +Q  +  D N+ +A  N            L
Sbjct: 2   AMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYN------------L 49

Query: 329 AGAGANTGEGACLDQASAVNVAKECXXXXXXXXXXXXHIWANLANAYYLTGDHRSSGKCL 388
             A    G     D   A+    E               W    NAYY  GD++ + +  
Sbjct: 50  GNAYYKQG-----DYQKAI----EYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDY 100

Query: 389 EKAAKLEPNCMSTR 402
           +KA +L+PN    +
Sbjct: 101 QKALELDPNNAKAK 114



 Score = 38.9 bits (89), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 30/73 (41%)

Query: 242 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
           A  W  LG    K                +DPNN     NLG AY++ GD +++ + +Q 
Sbjct: 9   AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68

Query: 302 LILKDQNHPAALI 314
            +  D N+  A  
Sbjct: 69  ALELDPNNAKAWY 81



 Score = 38.5 bits (88), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE 414
           W NL NAYY  GD++ + +  +KA +L+PN  S  Y +  +  K  +
Sbjct: 12  WKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGD 58



 Score = 35.8 bits (81), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE 414
           W NL NAYY  GD++ + +  +KA +L+PN     Y    +  K  +
Sbjct: 46  WYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGD 92



 Score = 34.7 bits (78), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 32/81 (39%)

Query: 235 MQSDTRQAVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQ 294
           ++ D   A  W  LG    K                +DPNN       G AY++ GD ++
Sbjct: 36  LELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQK 95

Query: 295 SAKCFQDLILKDQNHPAALIN 315
           + + +Q  +  D N+  A  N
Sbjct: 96  AIEDYQKALELDPNNAKAKQN 116



 Score = 28.9 bits (63), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 514 WANLANAYYLTGDHRSSGKCLEKVL 538
           W NL NAYY  GD++ + +  +K L
Sbjct: 12  WKNLGNAYYKQGDYQKAIEYYQKAL 36


>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
          Length = 125

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 22/134 (16%)

Query: 270 AVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 328
           A+DP N+ +   NLG AY++ GD +++ + +Q  +    N+  A  N            L
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYN------------L 49

Query: 329 AGAGANTGEGACLDQASAVNVAKECXXXXXXXXXXXXHIWANLANAYYLTGDHRSSGKCL 388
             A    G+          + A E               W NL NAYY  GD+  + +  
Sbjct: 50  GNAYYKQGD---------YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 100

Query: 389 EKAAKLEPNCMSTR 402
           +KA +L PN    +
Sbjct: 101 QKALELYPNNAEAK 114



 Score = 35.0 bits (79), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417
           W NL NAYY  GD+  + +  +KA +L PN     Y +  +  K  +  +
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 61



 Score = 35.0 bits (79), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417
           W NL NAYY  GD+  + +  +KA +L PN     Y +  +  K  +  +
Sbjct: 46  WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 95



 Score = 33.5 bits (75), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 30/74 (40%)

Query: 242 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
           A  W  LG    K                + PNN +   NLG AY++ GD +++ + +Q 
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 302 LILKDQNHPAALIN 315
            +    N+  A  N
Sbjct: 69  ALELYPNNAEAWYN 82



 Score = 33.5 bits (75), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 242 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300
           A  W  LG    K                + PNN +   NLG AY++ GD +++ + +Q
Sbjct: 43  AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101



 Score = 29.6 bits (65), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 514 WANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544
           W NL NAYY  GD+  + +  +K L +Y ++
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELYPNN 42



 Score = 29.6 bits (65), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 514 WANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544
           W NL NAYY  GD+  + +  +K L +Y ++
Sbjct: 46  WYNLGNAYYKQGDYDEAIEYYQKALELYPNN 76



 Score = 29.6 bits (65), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 514 WANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544
           W NL NAYY  GD+  + +  +K L +Y ++
Sbjct: 80  WYNLGNAYYKQGDYDEAIEYYQKALELYPNN 110


>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 91

 Score = 38.9 bits (89), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 32/74 (43%)

Query: 242 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
           A  W  LG    K                +DPNN +   NLG AY++ GD +++ + +Q 
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 302 LILKDQNHPAALIN 315
            +  D N+  A  N
Sbjct: 69  ALELDPNNAEAKQN 82



 Score = 36.6 bits (83), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417
           W NL NAYY  GD+  + +  +KA +L+PN     Y +  +  K  +  +
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61



 Score = 34.3 bits (77), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 411
           W NL NAYY  GD+  + +  +KA +L+PN    +  +  ++ K
Sbjct: 46  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89



 Score = 32.3 bits (72), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 270 AVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 315
           A+DP N+ +   NLG AY++ GD +++ + +Q  +  D N+  A  N
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 48


>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
          Length = 70

 Score = 33.9 bits (76), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417
           W NL NAYY  GD+  + +  +KA +L+P      Y +  +  K  +  +
Sbjct: 6   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 55



 Score = 32.7 bits (73), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 242 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300
           A  W  LG    K                +DP + +   NLG AY++ GD +++ + +Q
Sbjct: 3   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61



 Score = 32.0 bits (71), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKLEP 396
           W NL NAYY  GD+  + +  +KA +L+P
Sbjct: 40  WYNLGNAYYKQGDYDEAIEYYQKALELDP 68


>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
 pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
 pdb|3VTY|A Chain A, Crystal Structure Of Mama
 pdb|3VTY|B Chain B, Crystal Structure Of Mama
 pdb|3VTY|C Chain C, Crystal Structure Of Mama
 pdb|3VTY|D Chain D, Crystal Structure Of Mama
          Length = 184

 Score = 29.3 bits (64), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 180
           A A++ LGL+Y  +G+  KA+ +YEK   I
Sbjct: 107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.128    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,551,379
Number of Sequences: 62578
Number of extensions: 468874
Number of successful extensions: 951
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 74
length of query: 546
length of database: 14,973,337
effective HSP length: 104
effective length of query: 442
effective length of database: 8,465,225
effective search space: 3741629450
effective search space used: 3741629450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)