Query 009045
Match_columns 546
No_of_seqs 924 out of 4447
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 19:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3.1E-44 6.7E-49 331.5 25.2 355 134-544 133-489 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 2.3E-42 5E-47 319.1 28.6 392 93-541 122-520 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 4E-34 8.6E-39 293.5 42.9 381 92-542 132-573 (615)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-31 2.7E-36 291.9 41.2 408 94-539 472-899 (899)
5 PRK11447 cellulose synthase su 100.0 5.6E-31 1.2E-35 287.2 44.2 440 93-542 118-702 (1157)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-30 2.2E-35 284.8 41.4 429 92-542 334-801 (899)
7 PRK15174 Vi polysaccharide exp 100.0 5.4E-30 1.2E-34 261.7 38.6 323 126-541 53-382 (656)
8 PRK11447 cellulose synthase su 100.0 6.9E-30 1.5E-34 278.7 40.2 366 132-539 284-739 (1157)
9 PRK15174 Vi polysaccharide exp 100.0 4.3E-29 9.4E-34 255.1 38.7 345 93-541 48-404 (656)
10 TIGR00990 3a0801s09 mitochondr 100.0 2.8E-29 6E-34 257.8 36.1 339 93-512 166-577 (615)
11 KOG2002 TPR-containing nuclear 100.0 2.3E-29 5.1E-34 245.3 31.6 428 92-542 204-711 (1018)
12 KOG0547 Translocase of outer m 100.0 1.8E-28 3.8E-33 221.7 28.4 386 88-542 116-568 (606)
13 KOG1126 DNA-binding cell divis 100.0 2.4E-28 5.1E-33 230.0 23.9 290 133-544 335-624 (638)
14 KOG2002 TPR-containing nuclear 100.0 3.5E-26 7.6E-31 223.3 33.8 371 133-543 146-562 (1018)
15 PRK10049 pgaA outer membrane p 100.0 2.4E-25 5.2E-30 232.6 40.7 377 134-544 32-460 (765)
16 KOG1126 DNA-binding cell divis 99.9 2.6E-26 5.6E-31 216.3 21.5 218 139-400 409-626 (638)
17 KOG1155 Anaphase-promoting com 99.9 3.8E-24 8.3E-29 192.7 31.9 354 93-539 170-535 (559)
18 PRK09782 bacteriophage N4 rece 99.9 1.7E-24 3.7E-29 226.1 33.0 298 135-527 459-760 (987)
19 PRK09782 bacteriophage N4 rece 99.9 1.2E-23 2.5E-28 219.8 37.4 369 134-542 359-742 (987)
20 PRK11788 tetratricopeptide rep 99.9 7.5E-24 1.6E-28 207.1 34.1 289 134-541 52-348 (389)
21 PRK10049 pgaA outer membrane p 99.9 1.5E-23 3.3E-28 219.1 37.9 369 144-544 8-426 (765)
22 KOG1155 Anaphase-promoting com 99.9 3.2E-23 6.8E-28 186.8 32.4 318 148-541 161-496 (559)
23 KOG0624 dsRNA-activated protei 99.9 1.9E-23 4.1E-28 181.1 27.8 320 147-544 34-374 (504)
24 KOG0547 Translocase of outer m 99.9 8.3E-24 1.8E-28 191.7 26.5 190 343-544 338-536 (606)
25 PRK11788 tetratricopeptide rep 99.9 5.2E-23 1.1E-27 201.1 31.4 272 150-543 34-314 (389)
26 KOG2076 RNA polymerase III tra 99.9 4.3E-22 9.4E-27 193.8 36.3 327 126-538 150-510 (895)
27 KOG1173 Anaphase-promoting com 99.9 2.5E-21 5.5E-26 179.1 30.1 383 145-543 76-521 (611)
28 KOG0624 dsRNA-activated protei 99.9 5.6E-22 1.2E-26 172.1 23.9 292 93-402 44-344 (504)
29 KOG0548 Molecular co-chaperone 99.9 1.2E-21 2.5E-26 180.7 27.2 325 218-543 12-458 (539)
30 PRK14574 hmsH outer membrane p 99.9 5.2E-20 1.1E-24 188.8 40.7 418 92-544 39-517 (822)
31 KOG1129 TPR repeat-containing 99.9 1.9E-21 4.1E-26 167.8 23.1 274 159-542 187-460 (478)
32 KOG2003 TPR repeat-containing 99.9 2.1E-20 4.6E-25 168.2 30.6 359 151-543 201-692 (840)
33 PF13429 TPR_15: Tetratricopep 99.9 1.1E-22 2.4E-27 188.2 15.2 255 218-541 18-278 (280)
34 PRK12370 invasion protein regu 99.9 2E-20 4.3E-25 188.7 31.6 249 220-538 273-533 (553)
35 KOG0495 HAT repeat protein [RN 99.9 2.4E-19 5.3E-24 168.3 35.9 310 218-539 526-879 (913)
36 KOG1173 Anaphase-promoting com 99.9 2.1E-20 4.6E-25 173.1 27.6 292 149-523 242-535 (611)
37 PRK11189 lipoprotein NlpI; Pro 99.9 9.5E-20 2E-24 168.6 28.8 236 220-526 38-286 (296)
38 KOG2076 RNA polymerase III tra 99.9 1.3E-19 2.9E-24 176.6 29.7 305 219-544 150-482 (895)
39 KOG4162 Predicted calmodulin-b 99.9 1.6E-19 3.4E-24 173.2 29.7 403 109-546 344-789 (799)
40 PRK11189 lipoprotein NlpI; Pro 99.9 3.4E-20 7.4E-25 171.5 24.1 221 254-543 38-268 (296)
41 PRK12370 invasion protein regu 99.9 1E-19 2.3E-24 183.5 29.5 225 147-406 252-482 (553)
42 PRK14574 hmsH outer membrane p 99.9 1.5E-18 3.3E-23 178.2 38.2 353 143-540 26-396 (822)
43 KOG0548 Molecular co-chaperone 99.9 2.9E-19 6.3E-24 165.0 29.1 372 91-536 6-485 (539)
44 TIGR00540 hemY_coli hemY prote 99.9 1.2E-18 2.5E-23 169.5 33.6 304 153-541 86-400 (409)
45 KOG1129 TPR repeat-containing 99.9 1.4E-20 3E-25 162.5 17.6 212 151-407 223-437 (478)
46 KOG1125 TPR repeat-containing 99.9 3.4E-20 7.3E-25 172.6 21.2 256 92-385 290-562 (579)
47 KOG1125 TPR repeat-containing 99.9 1.3E-20 2.8E-25 175.3 18.2 233 217-509 294-530 (579)
48 KOG2003 TPR repeat-containing 99.9 1.1E-18 2.3E-23 157.4 27.0 237 257-526 471-709 (840)
49 TIGR02521 type_IV_pilW type IV 99.8 1E-18 2.2E-23 158.1 27.3 202 241-541 30-233 (234)
50 KOG1127 TPR repeat-containing 99.8 1.2E-18 2.6E-23 171.0 27.2 392 109-541 479-914 (1238)
51 PF13429 TPR_15: Tetratricopep 99.8 9.6E-21 2.1E-25 175.3 12.2 254 94-394 15-277 (280)
52 COG3063 PilF Tfp pilus assembl 99.8 1E-18 2.2E-23 144.4 21.9 206 151-400 35-242 (250)
53 KOG0550 Molecular chaperone (D 99.8 1.1E-19 2.4E-24 161.9 17.6 283 218-543 59-353 (486)
54 COG3063 PilF Tfp pilus assembl 99.8 2.7E-18 5.8E-23 141.9 23.9 205 242-513 35-243 (250)
55 PLN03081 pentatricopeptide (PP 99.8 1.9E-17 4.1E-22 173.1 36.7 362 134-540 140-557 (697)
56 KOG1174 Anaphase-promoting com 99.8 2.7E-18 6E-23 153.0 25.4 294 141-524 222-518 (564)
57 PLN02789 farnesyltranstransfer 99.8 3.8E-18 8.3E-23 156.9 27.3 164 223-407 52-225 (320)
58 TIGR02521 type_IV_pilW type IV 99.8 2.6E-18 5.7E-23 155.4 24.5 203 150-396 30-234 (234)
59 PRK10747 putative protoheme IX 99.8 4E-17 8.7E-22 157.9 33.4 304 152-542 85-392 (398)
60 KOG0495 HAT repeat protein [RN 99.8 7.3E-17 1.6E-21 152.0 33.3 350 109-519 537-893 (913)
61 KOG1156 N-terminal acetyltrans 99.8 5E-17 1.1E-21 153.3 32.0 363 134-541 24-435 (700)
62 PLN02789 farnesyltranstransfer 99.8 2.1E-17 4.6E-22 152.0 24.9 207 134-378 54-268 (320)
63 TIGR00540 hemY_coli hemY prote 99.8 7.6E-17 1.7E-21 156.9 29.8 268 246-542 88-368 (409)
64 KOG1127 TPR repeat-containing 99.8 1.3E-17 2.9E-22 163.8 24.0 361 133-543 474-882 (1238)
65 cd05804 StaR_like StaR_like; a 99.8 1.7E-16 3.6E-21 153.1 30.8 315 147-541 2-337 (355)
66 PLN03218 maturation of RBCL 1; 99.8 2.7E-15 5.9E-20 158.7 42.1 347 134-541 423-784 (1060)
67 COG2956 Predicted N-acetylgluc 99.8 1.5E-16 3.3E-21 137.7 26.2 227 132-398 50-282 (389)
68 KOG1174 Anaphase-promoting com 99.8 1.6E-16 3.4E-21 141.9 26.2 254 223-544 247-504 (564)
69 KOG1915 Cell cycle control pro 99.8 6.2E-15 1.3E-19 134.1 34.5 406 109-539 60-499 (677)
70 KOG1840 Kinesin light chain [C 99.8 1.3E-16 2.7E-21 153.2 24.5 245 237-540 194-479 (508)
71 KOG1156 N-terminal acetyltrans 99.8 1.7E-14 3.7E-19 136.4 36.8 384 109-536 28-464 (700)
72 KOG0550 Molecular chaperone (D 99.8 3.4E-17 7.4E-22 146.3 17.5 264 132-473 64-349 (486)
73 PRK10747 putative protoheme IX 99.8 2.1E-15 4.6E-20 145.9 31.4 269 244-543 86-360 (398)
74 PLN03077 Protein ECB2; Provisi 99.8 4.2E-15 9.1E-20 159.4 36.8 303 220-540 401-720 (857)
75 KOG1840 Kinesin light chain [C 99.7 4.6E-16 1E-20 149.3 24.3 255 146-505 194-478 (508)
76 PLN03218 maturation of RBCL 1; 99.7 3.6E-14 7.8E-19 150.3 40.3 346 134-540 387-748 (1060)
77 COG2956 Predicted N-acetylgluc 99.7 4.3E-15 9.3E-20 128.8 25.3 250 221-539 48-310 (389)
78 PRK15359 type III secretion sy 99.7 4.8E-16 1E-20 126.8 15.5 127 228-378 13-139 (144)
79 KOG4162 Predicted calmodulin-b 99.7 8.2E-14 1.8E-18 134.5 31.4 369 134-543 340-752 (799)
80 TIGR03302 OM_YfiO outer membra 99.7 4.4E-15 9.6E-20 133.9 21.5 194 146-397 28-235 (235)
81 TIGR03302 OM_YfiO outer membra 99.7 8.1E-15 1.8E-19 132.2 23.0 196 239-542 30-234 (235)
82 PLN03081 pentatricopeptide (PP 99.7 8.2E-14 1.8E-18 145.9 32.3 212 134-394 104-354 (697)
83 KOG1915 Cell cycle control pro 99.7 1.7E-12 3.7E-17 118.5 35.8 409 109-544 94-589 (677)
84 PRK15359 type III secretion sy 99.7 2.5E-15 5.4E-20 122.6 15.4 124 261-408 12-135 (144)
85 PRK10370 formate-dependent nit 99.6 2.8E-14 6E-19 122.9 19.5 127 220-367 51-180 (198)
86 cd05804 StaR_like StaR_like; a 99.6 3.3E-13 7.2E-18 130.2 29.4 291 134-507 23-337 (355)
87 KOG3785 Uncharacterized conser 99.6 1.1E-13 2.4E-18 121.5 23.1 316 218-536 32-418 (557)
88 PLN03077 Protein ECB2; Provisi 99.6 3.4E-13 7.4E-18 144.7 31.0 381 96-537 231-651 (857)
89 PRK10370 formate-dependent nit 99.6 2.5E-14 5.4E-19 123.2 17.8 127 255-401 52-180 (198)
90 KOG1130 Predicted G-alpha GTPa 99.6 5E-14 1.1E-18 126.1 17.8 284 156-506 22-344 (639)
91 PRK15179 Vi polysaccharide bio 99.6 2E-13 4.3E-18 138.2 24.1 157 225-402 69-225 (694)
92 PRK14720 transcript cleavage f 99.6 4.4E-13 9.4E-18 136.5 26.4 260 145-541 25-284 (906)
93 KOG3060 Uncharacterized conser 99.6 1.3E-12 2.8E-17 109.9 22.4 169 219-408 63-234 (289)
94 KOG3060 Uncharacterized conser 99.6 3.5E-12 7.5E-17 107.4 23.7 161 224-405 28-194 (289)
95 KOG2376 Signal recognition par 99.6 5.3E-11 1.1E-15 112.0 33.5 215 134-400 29-259 (652)
96 PF12569 NARP1: NMDA receptor- 99.6 5.8E-11 1.2E-15 116.1 34.8 419 94-537 11-517 (517)
97 COG5010 TadD Flp pilus assembl 99.5 1.3E-12 2.9E-17 111.1 20.1 147 225-392 83-229 (257)
98 COG5010 TadD Flp pilus assembl 99.5 2E-12 4.4E-17 110.0 20.8 162 222-405 47-208 (257)
99 KOG3785 Uncharacterized conser 99.5 6.8E-12 1.5E-16 110.5 24.6 280 244-534 153-451 (557)
100 TIGR02552 LcrH_SycD type III s 99.5 3.7E-13 8.1E-18 109.8 15.1 119 229-368 4-122 (135)
101 TIGR02552 LcrH_SycD type III s 99.5 5.5E-13 1.2E-17 108.8 15.3 119 263-402 4-122 (135)
102 PF12569 NARP1: NMDA receptor- 99.5 3.5E-11 7.5E-16 117.6 29.9 226 150-399 3-262 (517)
103 COG3071 HemY Uncharacterized e 99.5 1.7E-10 3.7E-15 103.9 31.6 271 245-545 87-395 (400)
104 KOG1130 Predicted G-alpha GTPa 99.5 9.8E-14 2.1E-18 124.3 11.1 277 90-394 20-344 (639)
105 KOG1128 Uncharacterized conser 99.5 2.3E-12 4.9E-17 124.1 20.4 196 148-402 395-590 (777)
106 KOG0553 TPR repeat-containing 99.5 1.2E-13 2.5E-18 119.7 10.0 104 218-321 91-194 (304)
107 KOG2376 Signal recognition par 99.5 6.1E-10 1.3E-14 105.1 34.9 226 94-365 19-258 (652)
108 KOG0553 TPR repeat-containing 99.5 5.2E-13 1.1E-17 115.7 13.6 120 242-382 81-200 (304)
109 PRK14720 transcript cleavage f 99.5 7.9E-12 1.7E-16 127.5 23.7 202 133-410 47-268 (906)
110 PRK04841 transcriptional regul 99.5 1E-10 2.2E-15 127.5 33.4 320 150-543 408-763 (903)
111 PRK15179 Vi polysaccharide bio 99.5 3.7E-12 8E-17 129.1 20.2 139 197-367 86-224 (694)
112 PRK15363 pathogenicity island 99.5 4E-12 8.6E-17 101.1 15.0 106 235-361 27-133 (157)
113 KOG2047 mRNA splicing factor [ 99.4 9.5E-10 2.1E-14 104.6 32.7 417 95-543 33-582 (835)
114 KOG1128 Uncharacterized conser 99.4 7.8E-12 1.7E-16 120.4 17.9 206 220-507 410-617 (777)
115 PRK15363 pathogenicity island 99.4 8.2E-12 1.8E-16 99.3 13.5 109 268-397 26-135 (157)
116 KOG4340 Uncharacterized conser 99.4 1.5E-09 3.2E-14 93.8 27.5 347 133-544 26-447 (459)
117 COG4783 Putative Zn-dependent 99.4 2.8E-10 6.1E-15 105.4 24.5 154 272-507 302-455 (484)
118 COG3071 HemY Uncharacterized e 99.4 1.6E-09 3.6E-14 97.7 27.5 299 154-506 87-390 (400)
119 PLN03088 SGT1, suppressor of 99.3 5E-11 1.1E-15 113.0 15.9 112 246-378 6-117 (356)
120 KOG1941 Acetylcholine receptor 99.3 1.4E-09 3E-14 96.5 22.5 315 151-540 6-360 (518)
121 PF04733 Coatomer_E: Coatomer 99.3 7.9E-11 1.7E-15 107.4 15.1 251 218-542 11-267 (290)
122 PLN03088 SGT1, suppressor of 99.3 2.8E-11 6.1E-16 114.7 12.3 104 218-321 12-115 (356)
123 COG4783 Putative Zn-dependent 99.3 5.6E-10 1.2E-14 103.4 18.6 142 238-400 302-443 (484)
124 KOG2047 mRNA splicing factor [ 99.3 2.2E-08 4.7E-13 95.7 29.1 214 143-397 341-582 (835)
125 CHL00033 ycf3 photosystem I as 99.3 3.5E-10 7.5E-15 95.7 15.9 131 219-363 10-152 (168)
126 KOG4340 Uncharacterized conser 99.2 2.9E-09 6.3E-14 92.0 21.2 175 219-394 21-207 (459)
127 PRK10866 outer membrane biogen 99.2 2E-09 4.4E-14 95.8 20.8 166 219-391 43-238 (243)
128 COG4235 Cytochrome c biogenesi 99.2 9E-10 2E-14 96.7 17.3 127 257-401 137-263 (287)
129 PRK10866 outer membrane biogen 99.2 9.7E-09 2.1E-13 91.5 24.1 55 482-536 180-237 (243)
130 PF13525 YfiO: Outer membrane 99.2 2.4E-09 5.1E-14 93.3 19.5 175 150-385 4-198 (203)
131 PF13414 TPR_11: TPR repeat; P 99.2 6.3E-11 1.4E-15 83.5 7.5 67 241-307 2-69 (69)
132 PRK04841 transcriptional regul 99.2 8.5E-08 1.8E-12 104.7 35.1 344 151-542 341-722 (903)
133 TIGR02795 tol_pal_ybgF tol-pal 99.2 8.1E-10 1.8E-14 87.8 13.9 107 242-369 2-114 (119)
134 COG4235 Cytochrome c biogenesi 99.2 1.1E-09 2.4E-14 96.2 15.4 124 222-366 136-262 (287)
135 PRK02603 photosystem I assembl 99.2 1.1E-09 2.4E-14 92.9 14.4 84 238-321 31-117 (172)
136 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.8E-09 3.9E-14 85.8 14.6 106 276-402 2-113 (119)
137 PF12895 Apc3: Anaphase-promot 99.1 1.6E-10 3.6E-15 84.8 7.3 81 221-302 2-84 (84)
138 COG4785 NlpI Lipoprotein NlpI, 99.1 4.5E-09 9.7E-14 86.6 16.0 105 241-366 64-168 (297)
139 PF13525 YfiO: Outer membrane 99.1 2.1E-08 4.6E-13 87.3 21.7 186 241-531 4-198 (203)
140 PF13414 TPR_11: TPR repeat; P 99.1 2.9E-10 6.3E-15 80.0 7.9 66 477-542 3-69 (69)
141 PF09976 TPR_21: Tetratricopep 99.1 3E-09 6.6E-14 87.3 14.6 117 220-358 23-145 (145)
142 PF13432 TPR_16: Tetratricopep 99.1 4.3E-10 9.3E-15 78.0 7.8 65 246-310 1-65 (65)
143 PRK10153 DNA-binding transcrip 99.1 5.9E-09 1.3E-13 103.0 18.7 143 238-402 333-490 (517)
144 cd00189 TPR Tetratricopeptide 99.1 1.7E-09 3.7E-14 82.1 11.7 99 244-363 2-100 (100)
145 PF09976 TPR_21: Tetratricopep 99.1 8.5E-09 1.8E-13 84.7 16.4 117 254-392 23-145 (145)
146 cd00189 TPR Tetratricopeptide 99.1 1.9E-09 4.2E-14 81.8 11.8 99 278-397 2-100 (100)
147 PF04733 Coatomer_E: Coatomer 99.1 2.4E-09 5.2E-14 97.8 14.1 155 219-399 113-270 (290)
148 PRK11906 transcriptional regul 99.1 8.2E-09 1.8E-13 96.5 17.5 153 220-393 270-435 (458)
149 COG4785 NlpI Lipoprotein NlpI, 99.1 1.5E-08 3.2E-13 83.7 16.7 216 275-527 64-291 (297)
150 KOG0543 FKBP-type peptidyl-pro 99.1 1.1E-08 2.5E-13 93.1 17.2 129 151-321 208-336 (397)
151 KOG4648 Uncharacterized conser 99.1 1.3E-10 2.8E-15 102.1 4.5 229 280-541 101-331 (536)
152 PF14938 SNAP: Soluble NSF att 99.1 2.8E-08 6E-13 91.6 20.0 146 244-405 77-236 (282)
153 CHL00033 ycf3 photosystem I as 99.0 5.2E-09 1.1E-13 88.6 13.8 123 256-399 13-154 (168)
154 PRK02603 photosystem I assembl 99.0 3.6E-09 7.8E-14 89.8 12.8 106 272-398 31-153 (172)
155 KOG1070 rRNA processing protei 99.0 4.7E-08 1E-12 101.1 22.4 221 134-395 1441-1664(1710)
156 PRK11906 transcriptional regul 99.0 1.4E-08 3.1E-13 94.9 17.2 180 145-359 242-435 (458)
157 PRK15331 chaperone protein Sic 99.0 8.9E-09 1.9E-13 82.5 13.2 108 235-364 30-137 (165)
158 PRK10153 DNA-binding transcrip 99.0 2E-08 4.3E-13 99.3 18.0 126 220-367 354-489 (517)
159 KOG0543 FKBP-type peptidyl-pro 99.0 1.1E-08 2.4E-13 93.2 14.9 133 243-396 209-357 (397)
160 PF13432 TPR_16: Tetratricopep 99.0 1.5E-09 3.2E-14 75.3 7.3 63 482-544 2-64 (65)
161 KOG1941 Acetylcholine receptor 99.0 2.9E-08 6.2E-13 88.4 16.3 245 244-543 8-278 (518)
162 PRK10803 tol-pal system protei 99.0 1.3E-08 2.8E-13 91.3 14.2 95 219-313 154-254 (263)
163 PF12895 Apc3: Anaphase-promot 99.0 1.6E-09 3.5E-14 79.5 7.1 82 254-357 1-84 (84)
164 COG0457 NrfG FOG: TPR repeat [ 99.0 9.3E-07 2E-11 80.2 27.2 222 222-509 37-268 (291)
165 KOG4648 Uncharacterized conser 98.9 8.3E-10 1.8E-14 97.2 5.1 179 218-397 107-299 (536)
166 PRK10803 tol-pal system protei 98.9 4E-08 8.7E-13 88.1 15.8 107 241-368 141-254 (263)
167 PRK15331 chaperone protein Sic 98.9 1.4E-08 3E-13 81.4 11.3 109 268-398 29-137 (165)
168 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 4.4E-08 9.5E-13 92.4 15.8 122 248-393 175-296 (395)
169 PF12688 TPR_5: Tetratrico pep 98.9 6.3E-08 1.4E-12 74.9 13.2 96 243-359 2-103 (120)
170 PF14938 SNAP: Soluble NSF att 98.9 7.2E-08 1.6E-12 88.8 15.1 151 346-536 89-262 (282)
171 PF14559 TPR_19: Tetratricopep 98.9 6.8E-09 1.5E-13 72.8 6.4 65 220-284 3-67 (68)
172 COG4105 ComL DNA uptake lipopr 98.8 9.4E-07 2E-11 76.2 19.6 177 219-399 45-238 (254)
173 COG0457 NrfG FOG: TPR repeat [ 98.8 2.6E-06 5.6E-11 77.3 24.2 220 134-397 40-268 (291)
174 KOG1070 rRNA processing protei 98.8 7E-07 1.5E-11 92.8 21.6 253 224-542 1440-1702(1710)
175 KOG4234 TPR repeat-containing 98.8 3.9E-08 8.4E-13 80.1 9.5 101 218-318 105-210 (271)
176 KOG2053 Mitochondrial inherita 98.8 8.7E-06 1.9E-10 81.5 27.6 236 218-510 19-259 (932)
177 COG3898 Uncharacterized membra 98.8 4.4E-05 9.6E-10 69.3 29.5 295 157-539 90-391 (531)
178 PF14559 TPR_19: Tetratricopep 98.8 1.7E-08 3.8E-13 70.7 6.6 67 252-318 1-67 (68)
179 PF12688 TPR_5: Tetratrico pep 98.8 2.6E-07 5.7E-12 71.5 13.3 97 276-393 1-103 (120)
180 PF13371 TPR_9: Tetratricopept 98.8 4.2E-08 9.2E-13 69.8 8.3 68 249-316 2-69 (73)
181 KOG3617 WD40 and TPR repeat-co 98.8 8.9E-06 1.9E-10 80.5 26.0 296 156-538 805-1172(1416)
182 KOG3081 Vesicle coat complex C 98.8 9.6E-06 2.1E-10 69.8 23.0 244 219-535 19-265 (299)
183 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3E-07 6.4E-12 86.9 14.6 114 221-358 182-295 (395)
184 COG1729 Uncharacterized protei 98.7 3.9E-07 8.4E-12 79.4 13.5 97 219-315 152-254 (262)
185 KOG4234 TPR repeat-containing 98.7 3E-07 6.4E-12 75.1 11.6 107 245-372 98-209 (271)
186 KOG2053 Mitochondrial inherita 98.7 0.00059 1.3E-08 68.9 38.5 222 133-398 25-259 (932)
187 KOG2471 TPR repeat-containing 98.7 4.6E-06 1E-10 77.6 20.3 152 218-377 216-381 (696)
188 PF13371 TPR_9: Tetratricopept 98.7 1.5E-07 3.2E-12 67.0 8.3 67 339-405 3-69 (73)
189 KOG3081 Vesicle coat complex C 98.7 0.00017 3.8E-09 62.3 27.4 143 241-407 107-249 (299)
190 COG4105 ComL DNA uptake lipopr 98.6 3.8E-05 8.3E-10 66.5 23.7 173 343-534 46-227 (254)
191 COG4700 Uncharacterized protei 98.6 6.4E-06 1.4E-10 66.7 17.2 146 225-393 73-221 (251)
192 COG1729 Uncharacterized protei 98.6 1.6E-06 3.6E-11 75.6 14.7 105 245-370 144-254 (262)
193 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2.1E-07 4.6E-12 87.1 9.3 70 237-306 70-142 (453)
194 PF13512 TPR_18: Tetratricopep 98.6 1.4E-06 3.1E-11 68.4 12.4 95 218-312 20-135 (142)
195 PF13424 TPR_12: Tetratricopep 98.6 8.7E-08 1.9E-12 69.2 5.3 68 239-306 2-76 (78)
196 PF13424 TPR_12: Tetratricopep 98.6 1.3E-07 2.7E-12 68.4 5.9 66 477-542 5-77 (78)
197 PF06552 TOM20_plant: Plant sp 98.6 5.1E-07 1.1E-11 73.1 9.7 92 224-315 7-119 (186)
198 PF13512 TPR_18: Tetratricopep 98.6 2.1E-06 4.6E-11 67.4 12.9 81 241-321 9-95 (142)
199 KOG3617 WD40 and TPR repeat-co 98.6 6.5E-06 1.4E-10 81.4 18.9 246 218-538 738-994 (1416)
200 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2.8E-07 6.1E-12 86.3 8.8 68 473-540 71-141 (453)
201 KOG2300 Uncharacterized conser 98.5 0.00032 7E-09 65.7 27.5 130 151-299 7-150 (629)
202 KOG4555 TPR repeat-containing 98.5 2.2E-06 4.9E-11 64.8 10.2 92 219-310 54-149 (175)
203 PF06552 TOM20_plant: Plant sp 98.5 1.7E-06 3.7E-11 70.2 10.3 102 292-407 7-122 (186)
204 KOG1586 Protein required for f 98.5 6.9E-05 1.5E-09 63.2 19.8 189 163-405 26-235 (288)
205 COG4700 Uncharacterized protei 98.4 0.00011 2.5E-09 59.7 19.6 127 250-398 64-193 (251)
206 KOG4555 TPR repeat-containing 98.4 1.8E-05 3.8E-10 60.1 13.7 99 244-363 45-147 (175)
207 KOG1550 Extracellular protein 98.4 0.00018 3.9E-09 72.9 24.9 291 167-541 228-539 (552)
208 KOG2796 Uncharacterized conser 98.3 8E-05 1.7E-09 64.0 17.4 148 225-399 166-320 (366)
209 KOG4642 Chaperone-dependent E3 98.3 2.6E-06 5.7E-11 71.8 8.0 88 218-305 20-107 (284)
210 PF13431 TPR_17: Tetratricopep 98.3 6.5E-07 1.4E-11 51.8 3.1 34 499-532 1-34 (34)
211 KOG2796 Uncharacterized conser 98.3 0.00023 5E-09 61.3 19.5 227 241-521 68-333 (366)
212 KOG2610 Uncharacterized conser 98.3 0.00016 3.4E-09 64.5 19.0 153 219-392 114-274 (491)
213 KOG1914 mRNA cleavage and poly 98.3 0.0045 9.7E-08 59.3 33.6 181 352-540 266-464 (656)
214 KOG1550 Extracellular protein 98.3 0.00064 1.4E-08 68.9 25.7 149 223-395 227-394 (552)
215 PF13428 TPR_14: Tetratricopep 98.2 2.4E-06 5.2E-11 53.3 4.8 40 244-283 3-42 (44)
216 KOG0376 Serine-threonine phosp 98.2 1.5E-06 3.2E-11 81.2 5.4 103 218-320 14-116 (476)
217 KOG2471 TPR repeat-containing 98.2 0.00067 1.4E-08 63.7 22.3 132 143-288 232-381 (696)
218 KOG3616 Selective LIM binding 98.2 0.00068 1.5E-08 66.8 23.1 346 91-510 658-1028(1636)
219 PF05843 Suf: Suppressor of fo 98.2 7.4E-05 1.6E-09 68.6 15.9 135 244-399 3-141 (280)
220 PF13428 TPR_14: Tetratricopep 98.2 5.5E-06 1.2E-10 51.6 5.6 43 276-318 1-43 (44)
221 COG3898 Uncharacterized membra 98.2 0.0042 9.2E-08 56.9 25.4 279 132-506 99-392 (531)
222 KOG4642 Chaperone-dependent E3 98.1 7.9E-06 1.7E-10 69.0 7.2 89 283-392 17-105 (284)
223 PF13431 TPR_17: Tetratricopep 98.1 3.1E-06 6.8E-11 49.0 3.2 34 139-172 1-34 (34)
224 KOG0545 Aryl-hydrocarbon recep 98.1 0.00018 3.9E-09 61.2 14.2 122 151-313 178-301 (329)
225 KOG1586 Protein required for f 98.1 0.0026 5.7E-08 54.0 20.4 151 222-402 28-191 (288)
226 KOG1585 Protein required for f 98.0 0.00094 2E-08 57.0 17.6 202 151-391 31-253 (308)
227 PF04184 ST7: ST7 protein; In 98.0 0.0002 4.2E-09 67.8 15.0 160 220-402 180-383 (539)
228 PF04184 ST7: ST7 protein; In 98.0 0.00032 7E-09 66.4 16.3 216 134-394 185-414 (539)
229 KOG1585 Protein required for f 98.0 0.0032 7E-08 53.9 19.8 151 343-534 83-250 (308)
230 KOG0545 Aryl-hydrocarbon recep 98.0 9.7E-05 2.1E-09 62.8 10.7 61 339-399 238-298 (329)
231 KOG0985 Vesicle coat protein c 98.0 0.034 7.4E-07 57.5 29.8 233 222-469 1089-1378(1666)
232 PF05843 Suf: Suppressor of fo 97.9 0.00037 8E-09 64.0 14.3 127 220-367 13-143 (280)
233 KOG4507 Uncharacterized conser 97.9 0.0009 2E-08 64.3 16.7 117 139-276 201-317 (886)
234 KOG0376 Serine-threonine phosp 97.9 3E-05 6.5E-10 72.8 6.7 110 246-376 8-117 (476)
235 PF00515 TPR_1: Tetratricopept 97.9 2.9E-05 6.4E-10 45.2 4.2 34 365-398 1-34 (34)
236 KOG0530 Protein farnesyltransf 97.9 0.011 2.3E-07 51.4 20.8 160 225-405 60-227 (318)
237 PF02259 FAT: FAT domain; Int 97.8 0.0059 1.3E-07 58.8 22.5 65 478-542 253-340 (352)
238 PF07079 DUF1347: Protein of u 97.8 0.028 6E-07 52.9 29.4 135 152-304 7-156 (549)
239 PF00515 TPR_1: Tetratricopept 97.8 3.5E-05 7.6E-10 44.9 4.3 31 278-308 3-33 (34)
240 PF13281 DUF4071: Domain of un 97.8 0.0032 6.8E-08 59.0 19.0 165 218-400 151-340 (374)
241 PF07719 TPR_2: Tetratricopept 97.8 5.6E-05 1.2E-09 44.0 5.0 31 278-308 3-33 (34)
242 KOG3616 Selective LIM binding 97.8 0.0037 8E-08 61.9 19.6 60 243-302 662-732 (1636)
243 PF07719 TPR_2: Tetratricopept 97.8 5.6E-05 1.2E-09 44.1 4.8 34 365-398 1-34 (34)
244 KOG2610 Uncharacterized conser 97.8 0.0016 3.4E-08 58.4 15.7 126 248-391 109-235 (491)
245 COG3118 Thioredoxin domain-con 97.7 0.0016 3.5E-08 57.7 14.7 54 247-300 139-192 (304)
246 KOG2300 Uncharacterized conser 97.7 0.05 1.1E-06 51.7 31.4 118 133-266 25-151 (629)
247 PF10345 Cohesin_load: Cohesin 97.7 0.09 1.9E-06 54.5 34.0 294 225-538 38-431 (608)
248 PF03704 BTAD: Bacterial trans 97.7 0.0031 6.7E-08 51.8 15.2 114 155-304 10-124 (146)
249 PF13281 DUF4071: Domain of un 97.7 0.052 1.1E-06 51.1 25.2 108 275-400 140-261 (374)
250 PF10300 DUF3808: Protein of u 97.6 0.0018 4E-08 64.0 15.0 134 163-308 200-337 (468)
251 COG2976 Uncharacterized protei 97.6 0.0076 1.7E-07 50.0 15.8 116 226-363 70-191 (207)
252 KOG1308 Hsp70-interacting prot 97.6 2.4E-05 5.3E-10 69.9 1.3 90 219-308 125-214 (377)
253 KOG0530 Protein farnesyltransf 97.5 0.028 6.2E-07 48.9 18.8 155 223-392 93-251 (318)
254 KOG0551 Hsp90 co-chaperone CNS 97.5 0.00018 3.9E-09 64.2 5.9 93 218-310 91-187 (390)
255 COG3118 Thioredoxin domain-con 97.5 0.006 1.3E-07 54.2 14.7 145 134-301 151-297 (304)
256 KOG0551 Hsp90 co-chaperone CNS 97.4 0.0014 3E-08 58.7 10.3 101 242-363 81-185 (390)
257 PF10300 DUF3808: Protein of u 97.4 0.006 1.3E-07 60.5 15.9 188 351-542 177-378 (468)
258 KOG1308 Hsp70-interacting prot 97.4 0.00019 4.2E-09 64.3 4.5 91 252-363 124-214 (377)
259 COG0790 FOG: TPR repeat, SEL1 97.4 0.034 7.3E-07 51.9 19.9 154 221-398 90-270 (292)
260 PF13181 TPR_8: Tetratricopept 97.4 0.00041 8.9E-09 40.3 4.4 30 278-307 3-32 (34)
261 COG0790 FOG: TPR repeat, SEL1 97.4 0.054 1.2E-06 50.5 21.1 77 462-541 172-267 (292)
262 PF08424 NRDE-2: NRDE-2, neces 97.4 0.022 4.7E-07 53.6 18.0 150 229-396 6-185 (321)
263 PF03704 BTAD: Bacterial trans 97.3 0.0089 1.9E-07 49.0 13.7 91 248-359 12-124 (146)
264 PF13181 TPR_8: Tetratricopept 97.3 0.00037 8E-09 40.5 3.9 32 366-397 2-33 (34)
265 PF13176 TPR_7: Tetratricopept 97.3 0.00048 1E-08 40.5 4.4 30 513-542 1-30 (36)
266 PF13174 TPR_6: Tetratricopept 97.3 0.00037 8E-09 40.1 3.8 32 513-544 2-33 (33)
267 PF08631 SPO22: Meiosis protei 97.3 0.14 3E-06 47.1 23.6 240 134-392 10-273 (278)
268 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.17 3.7E-06 47.8 26.4 378 139-542 30-497 (660)
269 COG2909 MalT ATP-dependent tra 97.2 0.32 7E-06 50.2 31.9 244 275-536 414-684 (894)
270 PF02259 FAT: FAT domain; Int 97.2 0.2 4.3E-06 48.2 23.9 116 274-410 144-303 (352)
271 PF08631 SPO22: Meiosis protei 97.2 0.17 3.7E-06 46.6 27.1 154 218-393 3-185 (278)
272 PF04910 Tcf25: Transcriptiona 97.2 0.052 1.1E-06 51.7 18.7 138 139-304 28-167 (360)
273 KOG0890 Protein kinase of the 97.2 0.34 7.3E-06 55.5 26.7 257 247-544 1454-1735(2382)
274 PF04910 Tcf25: Transcriptiona 97.1 0.024 5.2E-07 53.9 15.9 145 234-398 32-226 (360)
275 PF08424 NRDE-2: NRDE-2, neces 97.1 0.13 2.9E-06 48.4 20.5 105 297-410 6-110 (321)
276 KOG2041 WD40 repeat protein [G 97.1 0.12 2.7E-06 51.4 20.1 239 235-537 686-936 (1189)
277 PF13176 TPR_7: Tetratricopept 97.1 0.0012 2.5E-08 38.9 4.2 29 153-181 1-29 (36)
278 KOG1914 mRNA cleavage and poly 97.1 0.34 7.3E-06 47.1 32.7 396 112-542 10-503 (656)
279 COG2976 Uncharacterized protei 97.1 0.069 1.5E-06 44.5 15.4 120 260-398 70-192 (207)
280 PF13174 TPR_6: Tetratricopept 97.0 0.0019 4E-08 37.1 4.4 32 479-510 2-33 (33)
281 KOG3824 Huntingtin interacting 96.9 0.003 6.6E-08 55.8 7.2 66 220-285 128-193 (472)
282 PF14561 TPR_20: Tetratricopep 96.9 0.014 3E-07 42.8 9.4 76 226-301 6-83 (90)
283 COG2909 MalT ATP-dependent tra 96.9 0.72 1.6E-05 47.8 28.9 214 150-398 414-651 (894)
284 KOG4507 Uncharacterized conser 96.8 0.0063 1.4E-07 58.8 8.8 101 219-319 618-719 (886)
285 KOG2396 HAT (Half-A-TPR) repea 96.8 0.36 7.8E-06 46.4 20.0 94 293-407 88-182 (568)
286 PF07079 DUF1347: Protein of u 96.8 0.12 2.7E-06 48.8 16.5 107 283-390 386-520 (549)
287 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0075 1.6E-07 38.7 6.1 43 479-521 3-45 (53)
288 PF09986 DUF2225: Uncharacteri 96.7 0.02 4.4E-07 49.9 10.6 112 164-284 90-208 (214)
289 KOG1258 mRNA processing protei 96.7 0.71 1.5E-05 45.6 26.0 297 223-541 60-396 (577)
290 KOG0985 Vesicle coat protein c 96.7 1.1 2.3E-05 47.3 25.7 228 248-539 1054-1307(1666)
291 COG4649 Uncharacterized protei 96.7 0.13 2.8E-06 41.9 13.8 77 224-300 74-156 (221)
292 PF04781 DUF627: Protein of un 96.7 0.0066 1.4E-07 45.4 6.2 105 157-270 2-106 (111)
293 KOG0890 Protein kinase of the 96.7 1.9 4.2E-05 49.8 29.9 295 219-542 1460-1786(2382)
294 PRK10941 hypothetical protein; 96.6 0.027 5.9E-07 50.8 10.8 76 244-319 183-258 (269)
295 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.015 3.2E-07 37.4 6.5 38 277-314 2-39 (53)
296 KOG3824 Huntingtin interacting 96.5 0.011 2.4E-07 52.4 7.2 71 249-319 123-193 (472)
297 KOG3783 Uncharacterized conser 96.4 1 2.2E-05 44.0 21.9 242 259-541 250-521 (546)
298 KOG2396 HAT (Half-A-TPR) repea 96.4 1.1 2.3E-05 43.4 28.0 94 225-318 88-182 (568)
299 PF09613 HrpB1_HrpK: Bacterial 96.3 0.036 7.9E-07 44.9 8.8 75 219-293 21-95 (160)
300 PRK13184 pknD serine/threonine 96.2 1 2.2E-05 48.4 21.4 98 216-314 483-590 (932)
301 PF12968 DUF3856: Domain of Un 96.2 0.26 5.6E-06 37.3 11.9 96 447-542 9-131 (144)
302 KOG1464 COP9 signalosome, subu 96.1 0.87 1.9E-05 40.2 17.0 212 132-379 42-286 (440)
303 smart00028 TPR Tetratricopepti 96.1 0.0096 2.1E-07 33.6 3.7 30 244-273 3-32 (34)
304 PF04781 DUF627: Protein of un 96.1 0.053 1.2E-06 40.7 8.2 91 249-360 3-107 (111)
305 PF09613 HrpB1_HrpK: Bacterial 96.1 0.16 3.5E-06 41.2 11.5 77 244-320 12-88 (160)
306 KOG2041 WD40 repeat protein [G 96.1 1.9 4E-05 43.5 21.1 60 242-301 796-877 (1189)
307 COG3914 Spy Predicted O-linked 96.0 1.4 3.1E-05 43.5 19.4 124 261-405 50-182 (620)
308 PF14561 TPR_20: Tetratricopep 96.0 0.12 2.6E-06 37.9 9.6 48 351-398 8-55 (90)
309 smart00028 TPR Tetratricopepti 96.0 0.013 2.9E-07 32.9 3.9 32 277-308 2-33 (34)
310 PRK10941 hypothetical protein; 95.9 0.12 2.7E-06 46.6 11.2 61 343-403 193-253 (269)
311 PF10602 RPN7: 26S proteasome 95.9 0.19 4.2E-06 42.4 11.7 103 242-361 36-143 (177)
312 PF09986 DUF2225: Uncharacteri 95.8 0.15 3.2E-06 44.6 11.1 99 220-318 89-208 (214)
313 KOG1464 COP9 signalosome, subu 95.8 1.2 2.6E-05 39.3 16.2 166 219-401 38-227 (440)
314 PF13374 TPR_10: Tetratricopep 95.8 0.025 5.4E-07 34.4 4.7 31 512-542 3-33 (42)
315 COG3914 Spy Predicted O-linked 95.7 0.35 7.7E-06 47.5 14.0 141 226-381 49-192 (620)
316 PRK15180 Vi polysaccharide bio 95.6 0.041 9E-07 52.1 7.2 127 216-363 297-423 (831)
317 COG4976 Predicted methyltransf 95.5 0.026 5.7E-07 48.0 5.1 58 342-399 6-63 (287)
318 COG4976 Predicted methyltransf 95.5 0.024 5.3E-07 48.2 4.7 56 220-275 7-62 (287)
319 KOG1258 mRNA processing protei 95.5 3.1 6.6E-05 41.4 33.3 171 343-525 309-489 (577)
320 KOG2422 Uncharacterized conser 95.4 1.7 3.6E-05 42.9 17.1 159 218-397 248-451 (665)
321 KOG3364 Membrane protein invol 95.3 0.22 4.8E-06 38.8 8.9 77 309-403 31-109 (149)
322 PF10345 Cohesin_load: Cohesin 95.3 4.6 9.9E-05 42.1 34.3 366 136-539 118-605 (608)
323 KOG1839 Uncharacterized protei 95.2 0.21 4.5E-06 53.8 11.6 154 220-394 944-1128(1236)
324 KOG3364 Membrane protein invol 95.2 0.44 9.5E-06 37.2 10.3 76 241-316 31-111 (149)
325 TIGR02561 HrpB1_HrpK type III 95.2 0.12 2.5E-06 41.2 7.4 74 220-293 22-95 (153)
326 PF13374 TPR_10: Tetratricopep 95.2 0.051 1.1E-06 33.0 4.6 30 151-180 2-31 (42)
327 KOG3783 Uncharacterized conser 95.2 1.9 4.2E-05 42.2 16.8 255 225-510 250-524 (546)
328 KOG0529 Protein geranylgeranyl 95.1 1.1 2.4E-05 42.2 14.6 163 225-404 46-234 (421)
329 PRK15180 Vi polysaccharide bio 95.1 0.14 3E-06 48.7 8.9 125 253-398 300-424 (831)
330 PF12968 DUF3856: Domain of Un 95.0 0.37 7.9E-06 36.6 8.9 106 152-270 8-128 (144)
331 KOG1310 WD40 repeat protein [G 94.8 0.1 2.2E-06 50.3 7.2 93 288-398 386-478 (758)
332 TIGR02561 HrpB1_HrpK type III 94.6 0.72 1.6E-05 36.9 10.4 76 245-320 13-88 (153)
333 KOG1310 WD40 repeat protein [G 94.5 0.19 4.2E-06 48.4 8.3 93 218-310 384-479 (758)
334 COG5191 Uncharacterized conser 94.5 0.086 1.9E-06 47.2 5.6 90 230-319 95-185 (435)
335 KOG0529 Protein geranylgeranyl 94.4 3.2 6.9E-05 39.3 15.7 139 224-371 91-235 (421)
336 COG5191 Uncharacterized conser 94.4 0.12 2.6E-06 46.3 6.3 89 298-407 95-184 (435)
337 COG3629 DnrI DNA-binding trans 94.4 0.42 9.2E-06 43.1 9.8 77 465-541 141-217 (280)
338 KOG1538 Uncharacterized conser 94.2 3.6 7.9E-05 41.2 16.2 44 343-394 759-802 (1081)
339 PF12862 Apc5: Anaphase-promot 94.1 0.21 4.6E-06 37.1 6.3 57 487-543 8-73 (94)
340 PF04053 Coatomer_WDAD: Coatom 94.0 3.7 8.1E-05 40.4 16.2 104 251-392 270-374 (443)
341 KOG3807 Predicted membrane pro 93.9 5.2 0.00011 36.6 16.0 126 138-299 205-334 (556)
342 COG5107 RNA14 Pre-mRNA 3'-end 93.7 6.8 0.00015 37.6 26.3 296 230-541 30-363 (660)
343 PRK13184 pknD serine/threonine 93.6 13 0.00028 40.4 26.3 141 156-310 480-625 (932)
344 PF10516 SHNi-TPR: SHNi-TPR; 93.6 0.15 3.2E-06 30.1 3.7 31 512-542 2-32 (38)
345 PF10602 RPN7: 26S proteasome 93.4 2 4.3E-05 36.4 11.7 96 443-538 34-140 (177)
346 KOG2422 Uncharacterized conser 93.4 3.5 7.6E-05 40.8 14.3 171 165-363 252-451 (665)
347 KOG4814 Uncharacterized conser 93.3 0.85 1.8E-05 45.3 10.3 95 244-359 356-456 (872)
348 COG2912 Uncharacterized conser 93.3 0.69 1.5E-05 41.2 8.9 76 244-319 183-258 (269)
349 PF07721 TPR_4: Tetratricopept 93.3 0.12 2.7E-06 27.5 2.8 25 152-176 2-26 (26)
350 PF10516 SHNi-TPR: SHNi-TPR; 93.2 0.19 4.1E-06 29.6 3.7 29 152-180 2-30 (38)
351 COG4649 Uncharacterized protei 93.2 4.2 9.1E-05 33.5 16.2 137 252-406 68-207 (221)
352 KOG1839 Uncharacterized protei 93.2 0.99 2.1E-05 49.0 11.4 168 337-542 938-1130(1236)
353 COG1747 Uncharacterized N-term 93.1 9.5 0.00021 37.4 21.0 59 341-399 215-293 (711)
354 PF07721 TPR_4: Tetratricopept 93.1 0.14 3E-06 27.3 2.8 24 512-535 2-25 (26)
355 KOG4814 Uncharacterized conser 92.8 12 0.00026 37.8 19.6 102 279-395 357-458 (872)
356 PF12862 Apc5: Anaphase-promot 92.5 0.68 1.5E-05 34.3 6.9 56 252-307 8-72 (94)
357 PF07720 TPR_3: Tetratricopept 92.2 0.55 1.2E-05 27.4 4.7 32 151-182 1-34 (36)
358 PF04053 Coatomer_WDAD: Coatom 92.1 2.5 5.3E-05 41.7 11.9 71 219-302 329-399 (443)
359 COG5159 RPN6 26S proteasome re 92.0 8.8 0.00019 34.5 18.6 161 218-393 13-193 (421)
360 COG3629 DnrI DNA-binding trans 91.9 1.1 2.3E-05 40.6 8.5 65 241-305 152-216 (280)
361 PF10579 Rapsyn_N: Rapsyn N-te 91.9 2.3 5E-05 29.8 8.1 34 286-319 16-49 (80)
362 PF04190 DUF410: Protein of un 91.8 9.8 0.00021 34.6 17.0 125 240-379 88-242 (260)
363 PF07720 TPR_3: Tetratricopept 91.8 0.71 1.5E-05 26.9 4.9 20 279-298 4-23 (36)
364 PF15015 NYD-SP12_N: Spermatog 91.6 0.75 1.6E-05 43.3 7.3 84 220-303 195-289 (569)
365 COG2912 Uncharacterized conser 91.0 0.71 1.5E-05 41.1 6.3 64 340-403 190-253 (269)
366 PF11207 DUF2989: Protein of u 91.0 1.9 4.2E-05 36.6 8.6 71 225-296 123-198 (203)
367 KOG3807 Predicted membrane pro 90.2 15 0.00033 33.8 18.3 53 251-305 193-245 (556)
368 KOG2063 Vacuolar assembly/sort 90.1 17 0.00037 38.8 16.2 30 445-474 684-713 (877)
369 COG3947 Response regulator con 90.0 1.5 3.3E-05 39.3 7.4 62 480-541 282-343 (361)
370 PF04190 DUF410: Protein of un 90.0 15 0.00032 33.4 18.4 100 241-360 48-170 (260)
371 PF10579 Rapsyn_N: Rapsyn N-te 89.9 2.4 5.3E-05 29.7 6.8 56 486-541 15-73 (80)
372 KOG1538 Uncharacterized conser 89.1 28 0.0006 35.4 16.3 58 245-302 588-658 (1081)
373 COG5159 RPN6 26S proteasome re 89.0 17 0.00037 32.8 15.6 196 338-542 10-237 (421)
374 PF10373 EST1_DNA_bind: Est1 D 88.9 1.5 3.3E-05 40.4 7.3 61 261-321 1-61 (278)
375 PF11207 DUF2989: Protein of u 88.5 6.9 0.00015 33.4 9.9 39 346-384 155-197 (203)
376 PF15015 NYD-SP12_N: Spermatog 88.2 4.2 9.2E-05 38.5 9.2 87 250-357 184-288 (569)
377 PRK11619 lytic murein transgly 88.1 37 0.00081 35.6 27.5 141 343-502 324-464 (644)
378 COG3947 Response regulator con 88.0 2.7 5.9E-05 37.7 7.5 61 244-304 281-341 (361)
379 smart00299 CLH Clathrin heavy 87.8 13 0.00028 29.9 14.8 119 343-523 19-137 (140)
380 KOG1463 26S proteasome regulat 87.7 12 0.00027 34.5 11.5 172 155-362 132-318 (411)
381 PRK11619 lytic murein transgly 86.7 44 0.00096 35.0 27.9 54 486-539 321-374 (644)
382 TIGR03504 FimV_Cterm FimV C-te 86.4 1.5 3.2E-05 26.9 3.6 25 515-539 3-27 (44)
383 PF12854 PPR_1: PPR repeat 86.3 2 4.4E-05 24.6 4.1 28 149-176 5-32 (34)
384 PF10373 EST1_DNA_bind: Est1 D 86.1 3 6.6E-05 38.4 7.6 62 227-288 1-62 (278)
385 smart00386 HAT HAT (Half-A-TPR 85.4 2.5 5.4E-05 23.4 4.3 30 491-520 1-30 (33)
386 KOG4014 Uncharacterized conser 84.8 22 0.00048 29.8 14.8 166 221-393 48-232 (248)
387 COG4455 ImpE Protein of avirul 84.8 2.9 6.3E-05 35.9 5.8 57 219-275 12-68 (273)
388 PF10255 Paf67: RNA polymerase 84.6 2.1 4.6E-05 41.1 5.6 60 244-304 124-192 (404)
389 COG1747 Uncharacterized N-term 84.5 45 0.00097 33.0 21.5 53 487-539 215-287 (711)
390 COG5536 BET4 Protein prenyltra 84.4 25 0.00053 31.7 11.4 166 225-405 49-233 (328)
391 TIGR03504 FimV_Cterm FimV C-te 84.3 2.4 5.3E-05 26.0 3.9 26 368-393 2-27 (44)
392 cd02682 MIT_AAA_Arch MIT: doma 83.9 7 0.00015 27.3 6.5 28 153-180 8-35 (75)
393 PF12854 PPR_1: PPR repeat 83.7 3.2 6.8E-05 23.7 4.1 27 510-536 6-32 (34)
394 PF10255 Paf67: RNA polymerase 83.7 19 0.00042 34.8 11.6 59 447-505 124-192 (404)
395 COG4455 ImpE Protein of avirul 83.7 9.1 0.0002 33.0 8.2 59 342-400 12-70 (273)
396 smart00386 HAT HAT (Half-A-TPR 83.6 3.9 8.4E-05 22.5 4.6 29 290-318 1-29 (33)
397 PF09670 Cas_Cas02710: CRISPR- 83.5 28 0.0006 33.8 12.8 62 244-305 133-198 (379)
398 PF11817 Foie-gras_1: Foie gra 83.4 10 0.00022 34.2 9.3 75 462-536 162-243 (247)
399 KOG4279 Serine/threonine prote 83.1 21 0.00046 36.8 11.8 126 150-291 200-335 (1226)
400 cd02682 MIT_AAA_Arch MIT: doma 82.8 9.7 0.00021 26.6 6.8 49 447-520 8-56 (75)
401 KOG0546 HSP90 co-chaperone CPR 82.8 2.3 5.1E-05 39.3 4.9 77 243-319 276-352 (372)
402 PF12739 TRAPPC-Trs85: ER-Golg 82.4 53 0.0011 32.4 15.7 113 153-271 210-329 (414)
403 PF00244 14-3-3: 14-3-3 protei 81.4 39 0.00085 30.2 14.7 57 338-394 8-66 (236)
404 KOG2581 26S proteasome regulat 81.4 52 0.0011 31.5 16.7 109 150-275 168-280 (493)
405 COG4941 Predicted RNA polymera 80.2 51 0.0011 30.7 15.4 166 133-317 212-406 (415)
406 KOG2114 Vacuolar assembly/sort 79.6 88 0.0019 33.1 24.5 84 151-262 368-451 (933)
407 PF12739 TRAPPC-Trs85: ER-Golg 79.4 68 0.0015 31.6 15.7 28 517-544 376-403 (414)
408 PF11817 Foie-gras_1: Foie gra 79.4 48 0.001 29.9 15.5 56 337-392 184-245 (247)
409 cd02680 MIT_calpain7_2 MIT: do 78.6 4.5 9.7E-05 28.3 4.1 21 486-506 15-35 (75)
410 KOG2114 Vacuolar assembly/sort 77.7 61 0.0013 34.2 13.1 51 343-394 346-397 (933)
411 KOG0276 Vesicle coat complex C 76.7 16 0.00034 36.7 8.5 48 218-270 647-694 (794)
412 COG5536 BET4 Protein prenyltra 76.5 15 0.00032 33.0 7.5 139 224-374 90-236 (328)
413 KOG1497 COP9 signalosome, subu 76.5 58 0.0013 30.1 11.3 99 242-358 103-211 (399)
414 PF13041 PPR_2: PPR repeat fam 76.4 12 0.00027 23.4 5.6 32 150-181 2-33 (50)
415 KOG0687 26S proteasome regulat 76.3 66 0.0014 29.9 11.7 105 241-363 103-213 (393)
416 KOG4014 Uncharacterized conser 76.2 46 0.00099 28.0 15.0 180 343-542 47-235 (248)
417 cd02677 MIT_SNX15 MIT: domain 74.9 5.1 0.00011 28.1 3.6 22 485-506 14-35 (75)
418 cd02680 MIT_calpain7_2 MIT: do 74.9 6.5 0.00014 27.5 4.1 18 220-237 18-35 (75)
419 PF13041 PPR_2: PPR repeat fam 74.8 8.2 0.00018 24.3 4.4 28 479-506 5-32 (50)
420 KOG0128 RNA-binding protein SA 74.8 1.2E+02 0.0026 32.1 32.3 222 138-398 134-380 (881)
421 KOG0546 HSP90 co-chaperone CPR 74.5 5.5 0.00012 37.0 4.6 64 343-406 287-350 (372)
422 PF09670 Cas_Cas02710: CRISPR- 74.2 32 0.0007 33.3 10.2 54 218-271 141-198 (379)
423 PF09205 DUF1955: Domain of un 74.0 26 0.00055 27.7 7.4 55 486-540 95-149 (161)
424 PF11846 DUF3366: Domain of un 73.8 13 0.00029 31.9 6.9 49 493-542 127-175 (193)
425 KOG0276 Vesicle coat complex C 73.7 40 0.00087 34.0 10.4 31 149-179 664-694 (794)
426 cd02681 MIT_calpain7_1 MIT: do 72.3 7.3 0.00016 27.4 3.9 17 220-236 18-34 (76)
427 PF09797 NatB_MDM20: N-acetylt 72.3 25 0.00053 34.0 9.0 49 220-268 195-243 (365)
428 KOG1920 IkappaB kinase complex 72.0 1.7E+02 0.0037 32.6 18.3 306 138-541 778-1094(1265)
429 PF14863 Alkyl_sulf_dimr: Alky 71.9 12 0.00026 30.1 5.5 50 242-291 70-119 (141)
430 KOG2581 26S proteasome regulat 71.9 97 0.0021 29.8 19.5 131 252-399 136-281 (493)
431 PF01535 PPR: PPR repeat; Int 71.9 7 0.00015 21.2 3.2 26 514-539 3-28 (31)
432 KOG1463 26S proteasome regulat 71.9 88 0.0019 29.3 21.4 160 219-393 15-196 (411)
433 PF04212 MIT: MIT (microtubule 71.2 12 0.00025 25.7 4.8 23 482-504 10-32 (69)
434 PF01535 PPR: PPR repeat; Int 71.1 7.2 0.00016 21.1 3.1 27 367-393 2-28 (31)
435 PF14863 Alkyl_sulf_dimr: Alky 70.7 14 0.00031 29.7 5.7 51 479-529 72-122 (141)
436 TIGR00756 PPR pentatricopeptid 70.4 11 0.00024 20.9 4.0 26 514-539 3-28 (35)
437 KOG0686 COP9 signalosome, subu 69.9 77 0.0017 30.5 10.8 95 277-392 151-256 (466)
438 cd02681 MIT_calpain7_1 MIT: do 69.2 13 0.00028 26.1 4.6 26 480-505 9-34 (76)
439 cd02656 MIT MIT: domain contai 68.0 11 0.00025 26.3 4.2 23 483-505 12-34 (75)
440 PHA02537 M terminase endonucle 67.9 9.4 0.0002 33.6 4.5 93 218-310 93-212 (230)
441 PF09797 NatB_MDM20: N-acetylt 67.6 32 0.00068 33.3 8.6 47 256-302 197-243 (365)
442 PF08311 Mad3_BUB1_I: Mad3/BUB 67.6 59 0.0013 25.6 14.5 85 165-269 40-126 (126)
443 PF08311 Mad3_BUB1_I: Mad3/BUB 65.7 65 0.0014 25.4 9.5 44 495-538 81-126 (126)
444 PF09205 DUF1955: Domain of un 65.6 48 0.001 26.3 7.3 53 343-395 98-150 (161)
445 PHA02537 M terminase endonucle 65.1 27 0.00058 30.8 6.7 111 154-275 86-211 (230)
446 PF11846 DUF3366: Domain of un 65.1 25 0.00053 30.3 6.7 51 346-397 126-176 (193)
447 cd02683 MIT_1 MIT: domain cont 64.6 17 0.00036 25.7 4.4 26 480-505 9-34 (77)
448 KOG0686 COP9 signalosome, subu 64.2 33 0.00071 32.8 7.4 32 151-182 150-181 (466)
449 smart00671 SEL1 Sel1-like repe 64.1 16 0.00034 20.7 3.8 29 512-540 2-34 (36)
450 COG5187 RPN7 26S proteasome re 64.0 1.2E+02 0.0026 27.8 14.0 103 443-545 113-226 (412)
451 cd02679 MIT_spastin MIT: domai 63.9 11 0.00025 26.6 3.5 15 166-180 4-18 (79)
452 KOG0128 RNA-binding protein SA 63.0 2.1E+02 0.0046 30.4 29.5 238 134-407 96-354 (881)
453 cd02679 MIT_spastin MIT: domai 62.0 16 0.00035 25.9 3.9 35 493-542 5-39 (79)
454 PF04097 Nic96: Nup93/Nic96; 61.2 2.2E+02 0.0047 29.9 17.0 91 247-357 263-353 (613)
455 PF08238 Sel1: Sel1 repeat; I 60.4 20 0.00042 20.8 3.8 28 512-539 2-36 (39)
456 KOG4279 Serine/threonine prote 60.0 1E+02 0.0022 32.3 10.3 106 275-399 200-321 (1226)
457 PF13812 PPR_3: Pentatricopept 59.9 25 0.00053 19.4 4.0 27 513-539 3-29 (34)
458 PF08626 TRAPPC9-Trs120: Trans 59.8 1.4E+02 0.0031 34.2 13.0 150 150-305 241-474 (1185)
459 cd02684 MIT_2 MIT: domain cont 59.0 20 0.00043 25.2 4.0 15 167-181 3-17 (75)
460 COG3014 Uncharacterized protei 58.9 1.6E+02 0.0035 27.7 13.1 28 367-394 127-154 (449)
461 PF10952 DUF2753: Protein of u 57.8 57 0.0012 25.3 6.4 66 245-310 4-88 (140)
462 PF13226 DUF4034: Domain of un 57.6 1.6E+02 0.0034 27.1 11.2 121 159-293 8-150 (277)
463 PF04212 MIT: MIT (microtubule 57.1 30 0.00066 23.6 4.7 29 153-181 7-35 (69)
464 cd02678 MIT_VPS4 MIT: domain c 56.7 21 0.00046 25.0 3.9 15 167-181 3-17 (75)
465 smart00745 MIT Microtubule Int 55.9 29 0.00064 24.3 4.6 24 482-505 13-36 (77)
466 TIGR03362 VI_chp_7 type VI sec 55.6 1.8E+02 0.0039 27.2 16.3 141 254-395 111-280 (301)
467 TIGR02710 CRISPR-associated pr 55.4 2E+02 0.0044 27.8 12.9 54 248-301 136-196 (380)
468 KOG4151 Myosin assembly protei 54.8 42 0.0009 35.0 6.9 106 247-373 58-169 (748)
469 PF05053 Menin: Menin; InterP 53.3 79 0.0017 31.8 8.2 48 258-305 295-347 (618)
470 COG4259 Uncharacterized protei 53.0 60 0.0013 24.1 5.5 34 511-544 72-105 (121)
471 PRK15490 Vi polysaccharide bio 52.3 69 0.0015 32.7 7.9 78 221-300 21-98 (578)
472 PF10952 DUF2753: Protein of u 52.1 46 0.001 25.8 5.1 64 337-400 7-89 (140)
473 KOG4521 Nuclear pore complex, 51.7 3.9E+02 0.0085 30.0 15.6 176 365-541 920-1133(1480)
474 PF01239 PPTA: Protein prenylt 51.7 40 0.00086 18.5 4.5 29 496-524 2-30 (31)
475 cd02678 MIT_VPS4 MIT: domain c 51.5 39 0.00085 23.6 4.6 24 482-505 11-34 (75)
476 TIGR03362 VI_chp_7 type VI sec 51.4 2.1E+02 0.0045 26.7 15.9 48 343-391 111-158 (301)
477 PF02064 MAS20: MAS20 protein 51.4 39 0.00084 26.3 4.8 30 155-184 67-96 (121)
478 PF12753 Nro1: Nuclear pore co 50.1 24 0.00052 33.6 4.2 48 493-542 334-386 (404)
479 KOG2561 Adaptor protein NUB1, 49.9 1.2E+02 0.0027 29.4 8.6 100 244-359 165-295 (568)
480 KOG0292 Vesicle coat complex C 48.9 2.3E+02 0.0049 30.6 10.9 119 154-278 994-1120(1202)
481 smart00299 CLH Clathrin heavy 48.8 1.4E+02 0.003 23.8 14.9 47 253-300 18-64 (140)
482 KOG4151 Myosin assembly protei 48.3 32 0.00069 35.8 5.0 113 157-286 59-171 (748)
483 PF12583 TPPII_N: Tripeptidyl 47.6 86 0.0019 24.7 6.0 38 486-523 85-122 (139)
484 PF12753 Nro1: Nuclear pore co 47.4 35 0.00075 32.6 4.7 47 460-506 333-391 (404)
485 cd02683 MIT_1 MIT: domain cont 46.9 1E+02 0.0022 21.8 7.5 39 448-511 9-47 (77)
486 KOG2062 26S proteasome regulat 46.8 3.8E+02 0.0082 28.4 12.4 210 257-524 38-255 (929)
487 COG3014 Uncharacterized protei 46.0 2.6E+02 0.0057 26.3 15.7 107 137-271 41-154 (449)
488 PF13226 DUF4034: Domain of un 45.7 2.4E+02 0.0053 25.9 11.4 88 295-382 62-150 (277)
489 cd02684 MIT_2 MIT: domain cont 45.6 53 0.0012 23.0 4.4 23 483-505 12-34 (75)
490 KOG1924 RhoA GTPase effector D 45.6 59 0.0013 33.9 6.2 13 170-182 731-743 (1102)
491 PF08626 TRAPPC9-Trs120: Trans 45.6 5.4E+02 0.012 29.8 14.7 82 460-541 360-475 (1185)
492 TIGR02996 rpt_mate_G_obs repea 44.9 64 0.0014 19.5 3.9 33 138-170 3-35 (42)
493 PF12921 ATP13: Mitochondrial 44.5 1.6E+02 0.0034 23.3 7.7 29 480-508 55-83 (126)
494 KOG0889 Histone acetyltransfer 43.7 8.4E+02 0.018 31.5 24.8 66 477-542 2812-2885(3550)
495 KOG0292 Vesicle coat complex C 43.1 93 0.002 33.2 7.3 74 214-300 649-722 (1202)
496 PF02184 HAT: HAT (Half-A-TPR) 42.6 64 0.0014 18.3 3.7 26 291-317 2-27 (32)
497 PF07219 HemY_N: HemY protein 41.6 1.4E+02 0.003 22.7 6.6 50 242-291 59-108 (108)
498 smart00777 Mad3_BUB1_I Mad3/BU 40.8 1.8E+02 0.0039 22.9 9.6 40 261-300 82-123 (125)
499 TIGR02710 CRISPR-associated pr 40.6 3.5E+02 0.0076 26.2 14.3 28 370-397 135-162 (380)
500 PF02064 MAS20: MAS20 protein 40.5 60 0.0013 25.3 4.4 31 246-276 67-97 (121)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-44 Score=331.47 Aligned_cols=355 Identities=19% Similarity=0.203 Sum_probs=244.4
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|...|+.+++++|+..++|.++|.++...|+.+.|..+|..+++++|.. .-++..+|.++..+
T Consensus 133 ~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l------------~ca~s~lgnLlka~--- 197 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL------------YCARSDLGNLLKAE--- 197 (966)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch------------hhhhcchhHHHHhh---
Confidence 556666666666666666666666666666666666666666666665432 12222333333333
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
|++.+|..+|.++++.+|..+.+|.+||.++..+|+...|+..|+++++++|...++|++||.+|...+.++
T Consensus 198 --------Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 198 --------GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred --------cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 333666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
.|+.+|.+++.+.|++..++-+++.+|+ .+|..+-||..|++++++.|..+.++.++|.
T Consensus 270 ~Avs~Y~rAl~lrpn~A~a~gNla~iYy---------------------eqG~ldlAI~~Ykral~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPNHAVAHGNLACIYY---------------------EQGLLDLAIDTYKRALELQPNFPDAYNNLAN 328 (966)
T ss_pred HHHHHHHHHHhcCCcchhhccceEEEEe---------------------ccccHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence 6666666666666666666665555555 6677777777777777777777777777777
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
++...|+..+|..+|.+++.+.|+.+++..+++.....+.. .. ...........+.|+...+..++|.
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e-----------~A~~ly~~al~v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IE-----------EATRLYLKALEVFPEFAAAHNNLAS 396 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-ch-----------HHHHHHHHHHhhChhhhhhhhhHHH
Confidence 77777777777777777777777777777777664433211 11 1112222233345566677888888
Q ss_pred HHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHH
Q 009045 454 VQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 531 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 531 (546)
+|..+|++++|+..|+.++. |.-.+++.++|.+|..+|+.+.|+.+|.+++..+|..++++.+||.+|...|+..+|+
T Consensus 397 i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 88888888888888888554 6666788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhccc
Q 009045 532 KCLEKVLMVYCSS 544 (546)
Q Consensus 532 ~~~~~al~~~~~~ 544 (546)
..|+.++.+-++.
T Consensus 477 ~sY~~aLklkPDf 489 (966)
T KOG4626|consen 477 QSYRTALKLKPDF 489 (966)
T ss_pred HHHHHHHccCCCC
Confidence 8888888876654
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-42 Score=319.14 Aligned_cols=392 Identities=17% Similarity=0.182 Sum_probs=346.1
Q ss_pred hhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 009045 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQP 167 (546)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 167 (546)
-++.+...|+...++ ..+..+++..|+...+|..+|.. +...|-.+|.++++++|....++..+|.++-..|+.
T Consensus 122 ~aN~~kerg~~~~al-~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 122 LANILKERGQLQDAL-ALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHHHhchHHHHH-HHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhccc
Confidence 456677888888887 88999999999999998887776 568888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHH
Q 009045 168 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 247 (546)
Q Consensus 168 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 247 (546)
.+|..+|.+|++..|. + +.+|.++|-+ +..+|+...|+..|+++++++|+..++|++
T Consensus 201 ~ea~~cYlkAi~~qp~---------f---AiawsnLg~~-----------f~~~Gei~~aiq~y~eAvkldP~f~dAYiN 257 (966)
T KOG4626|consen 201 EEAKACYLKAIETQPC---------F---AIAWSNLGCV-----------FNAQGEIWLAIQHYEEAVKLDPNFLDAYIN 257 (966)
T ss_pred chhHHHHHHHHhhCCc---------e---eeeehhcchH-----------HhhcchHHHHHHHHHHhhcCCCcchHHHhh
Confidence 9999999999998542 1 2344444444 456677799999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcc
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 327 (546)
||.+|...+.|++|+.+|.+++.+.|+++.++.++|.+|+.+|..+-|+..|++++.+.|+.++++.+++..+.
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk------ 331 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK------ 331 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
..|+..+|..+|.+++.+.|..+++..+||.+|..+|.+++|...|+++++..|....++.+++.
T Consensus 332 ---------------d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 332 ---------------DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLAS 396 (966)
T ss_pred ---------------hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHH
Q 009045 408 SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESA 485 (546)
Q Consensus 408 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~ 485 (546)
..-.+.. +.. ..........+.|..+.++.++|..|..+|+...|+..|.+++. |.-.+++.+||.
T Consensus 397 i~kqqgn--------l~~----Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 397 IYKQQGN--------LDD----AIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS 464 (966)
T ss_pred HHHhccc--------HHH----HHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence 5443311 122 22334455566788999999999999999999999999999665 666688999999
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 486 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 486 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
+|...|+..+||..|+.++++.|+.++++.++..++.-..++..=-+.+++..++.
T Consensus 465 i~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~siv 520 (966)
T KOG4626|consen 465 IYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIV 520 (966)
T ss_pred HhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999977777666555555555443
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4e-34 Score=293.47 Aligned_cols=381 Identities=16% Similarity=0.129 Sum_probs=306.6
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
..|..+++.|++..++ ..|.++|...|+ ...+..+|.+ +..+|.+.+.++++.+|++..+++.+|.+|..+|+
T Consensus 132 ~~G~~~~~~~~~~~Ai-~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAI-KLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4688899999999998 999999999996 3444444443 55889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcccchhc-------------------------cchhhHHHHHHHhhcc-------------cccc
Q 009045 167 PLKAVSSYEKAEEILLRCEADI-------------------------ARPELLSLVQIHHAQC-------------LLPE 208 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~-------------------------~~~~~~~~~~~~~~~~-------------~~~~ 208 (546)
+++|+..|..++..++...... ..+....... +.... ....
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHccCCcchhhhhccccccc
Confidence 9999999987766533211000 0000000000 00000 0000
Q ss_pred ccCCCcccc------ccChhhHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHH
Q 009045 209 SSGDNSLDK------ELEPEELEEILSKLKESMQS---DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCI 279 (546)
Q Consensus 209 ~~g~~~~~~------~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 279 (546)
..+...... ....+++++|+..|++++.. .|....++..+|.++..+|++++|+..|++++.++|++..+|
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 368 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSY 368 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 011110000 01235789999999999976 477888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 280 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
..+|.++..+|++++|+..|+++++.+|++..+++.+|.++. ..|++++|+.+|+++++
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF---------------------IKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887 89999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCC
Q 009045 360 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP 439 (546)
Q Consensus 360 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (546)
++|++...+..+|.++..+|++++|+..|++++...|+++
T Consensus 428 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~---------------------------------------- 467 (615)
T TIGR00990 428 LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP---------------------------------------- 467 (615)
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----------------------------------------
Confidence 9999999999999999999999999999999999988764
Q ss_pred CCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhh--h------HHhhHHHHH-HHhccHHHHHHHHHHHHHhCCCC
Q 009045 440 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE--C------AGAGESAFL-DQASAVNVAKECLLAALKADPKA 510 (546)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~------~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~ 510 (546)
.++..+|.++...|++++|+..|.+++.-.+. . .+++.+..+ ...|++++|+..|+++++++|++
T Consensus 468 ------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 468 ------DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred ------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 45666788888899999999999996653221 1 233333334 34799999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
..++..+|.++...|++++|+.+|++++++..
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998865
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-31 Score=291.93 Aligned_cols=408 Identities=22% Similarity=0.197 Sum_probs=296.7
Q ss_pred hhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChh
Q 009045 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPL 168 (546)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 168 (546)
+..+...|+...++ ..|.+++...|+....+...+.+ +...|.+.|++++..+|.+..++..++.++...|+++
T Consensus 472 ~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 550 (899)
T TIGR02917 472 GAIYLGKGDLAKAR-EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550 (899)
T ss_pred HHHHHhCCCHHHHH-HHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHH
Confidence 33444444444444 55555555555544444333332 2344555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHH
Q 009045 169 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 248 (546)
Q Consensus 169 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 248 (546)
+|+..|+++++.+|.+. ..+..++.. +...|++++|+..+++++...|.+..+|..+
T Consensus 551 ~A~~~~~~~~~~~~~~~------------~~~~~l~~~-----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 607 (899)
T TIGR02917 551 EAVAWLEKAAELNPQEI------------EPALALAQY-----------YLGKGQLKKALAILNEAADAAPDSPEAWLML 607 (899)
T ss_pred HHHHHHHHHHHhCccch------------hHHHHHHHH-----------HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 55555555555543220 111222222 3456777999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccc
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 328 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 328 (546)
|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|++...+..++.++...+....
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888865433221
Q ss_pred c-------------ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 009045 329 A-------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 395 (546)
Q Consensus 329 ~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 395 (546)
+ ....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+..++++++.+
T Consensus 688 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 688 AKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 23334457788888888888888888888888876 677788888888888888888888888888
Q ss_pred CCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--
Q 009045 396 PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS-- 473 (546)
Q Consensus 396 p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-- 473 (546)
|++...+..++...... .....+...+...+. ..|.++.++..++.++...|+ .+|+..+.+.+.
T Consensus 767 ~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQ--------KDYDKAIKHYRTVVK----KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred CCCHHHHHHHHHHHHHC--------cCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 88887777776654432 112223333333332 346678888899999999888 788888888544
Q ss_pred chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 474 KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 474 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
+.+...+..+|.++...|++++|+.+|+++++.+|.++.+++.++.++...|++++|++.++++++
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 555667778888999999999999999999999999999999999999999999999999988763
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.6e-31 Score=287.25 Aligned_cols=440 Identities=14% Similarity=0.131 Sum_probs=315.2
Q ss_pred hhhHHhhccchhhhhhHHHHHhHhcCCCCcc-c---ccccCCC--CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 93 EGKKINKLGKCRSRISSKMDSALEFGVDADG-D---QSGLGTS--SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~-~---~~~~g~~--~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
.+..+...|+...++ ..|.+++...|.... + +...... +..+|.+.|+++++.+|.++.++..+|.++...|+
T Consensus 118 ~A~ll~~~g~~~eA~-~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEAL-ASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHH-HHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 455677888888887 899999998887642 1 1111111 44789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcccchh-----------ccchhhHHHHHH--------------Hhhccc----------cccccC
Q 009045 167 PLKAVSSYEKAEEILLRCEAD-----------IARPELLSLVQI--------------HHAQCL----------LPESSG 211 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~-----------~~~~~~~~~~~~--------------~~~~~~----------~~~~~g 211 (546)
+++|+..+++++...+..... ...+........ ...+.. ....+|
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 999999999987643211000 000000000000 000000 000112
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC----------------
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------- 275 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 275 (546)
.. ++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+|+++++.+|++
T Consensus 277 ~~----~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 277 LA----AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HH----HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 22 4567778888888888888888888888888888888888888888888888777654
Q ss_pred --------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009045 276 --------------------------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323 (546)
Q Consensus 276 --------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 323 (546)
..++..+|.++...|++++|++.|+++++++|++..++..++.++...
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 334455666666666666666666666666666666665555554321
Q ss_pred hCcccc----------------------ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 009045 324 YGSVLA----------------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 381 (546)
Q Consensus 324 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 381 (546)
....+ ....+..+|..+...|++++|+..|+++++++|+++.+++.+|.+|...|++
T Consensus 433 -~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 -SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred -CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 00000 0112234677788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHH-----HhhhccC---------chhHHHH------------------HHHH
Q 009045 382 RSSGKCLEKAAKLEPNCMSTRYAVAVSRIK-----DAERSQE---------PTEQLSW------------------AGNE 429 (546)
Q Consensus 382 ~~A~~~~~~al~~~p~~~~~~~~l~~~~l~-----~~~~~~~---------~~~~~~~------------------~~~~ 429 (546)
++|+..|+++++.+|+++..++.++..... ++..... ....+.. ....
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999888776543211 0000000 0000000 0011
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc--cchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC
Q 009045 430 MASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 507 (546)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 507 (546)
....+. ..|.++..+..+|.++...|++++|+..|.+.+ .|.+..++++++.+|...|++++|+..|+++++..
T Consensus 592 A~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 592 AEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 122222 356677889999999999999999999999965 47777899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 508 PKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 508 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
|+++.++..+|.++...|++++|+++|++++...+
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 99999999999999999999999999999998764
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-30 Score=284.81 Aligned_cols=429 Identities=19% Similarity=0.169 Sum_probs=284.3
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
..+..+...|+...++ ..+.+++...|.....+...|.+ +..+|.+.|++++..+|++..++..+|.++...|+
T Consensus 334 ~la~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 334 LLASIQLRLGRVDEAI-ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHHCCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 3566677888888876 78888888888766655555444 45788888888888889888888899999999999
Q ss_pred hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHh--------------------hccccccccCCCccccccChhhHHH
Q 009045 167 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH--------------------AQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
+++|+..|+++++..|+..... ..++..+. .....+..+|.. +...|++++
T Consensus 413 ~~~A~~~~~~a~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~ 483 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELGRAD-----LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI----YLGKGDLAK 483 (899)
T ss_pred hHHHHHHHHHHHhhCCcchhhH-----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH----HHhCCCHHH
Confidence 9999999998888766432110 00000000 000111111222 445566678
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
|+..|+++++.+|++..+++.+|.++...|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888777777777777788888778888888888888877777777777777887777888888888888877777
Q ss_pred CCCHHHHHHHHHHHHHhhCcccc-------------ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 307 QNHPAALINYAALLLCKYGSVLA-------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 307 p~~~~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
|.+...+..++.++...+....+ ....+..+|.++...|++++|+..|+++++..|.++.++..+|.
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 77777777777766544322111 23345557777778888888888888888888888888888888
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
++...|++++|+..|+++++.+|++...+..++....... ....+. ..+.......+..+..+..+|.
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~----~~~~~~~~~~~~~~~~~~~~~~ 711 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK--------RTESAK----KIAKSLQKQHPKAALGFELEGD 711 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------CHHHHH----HHHHHHHhhCcCChHHHHHHHH
Confidence 8888888888888888888888887777666655433211 011111 1111111223445556666666
Q ss_pred HHHhcccHHHHHHHHHhhccchh-hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009045 454 VQKTHHEVAAAFETEENELSKME-ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 532 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 532 (546)
++...|++++|+..|.+.+...+ ...++.++.++...|++++|+..++++++..|++..+++.+|.+|...|++++|+.
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 66667777777666666443211 14455566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhc
Q 009045 533 CLEKVLMVYC 542 (546)
Q Consensus 533 ~~~~al~~~~ 542 (546)
+|+++++..+
T Consensus 792 ~~~~~~~~~p 801 (899)
T TIGR02917 792 HYRTVVKKAP 801 (899)
T ss_pred HHHHHHHhCC
Confidence 6666665543
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=5.4e-30 Score=261.73 Aligned_cols=323 Identities=11% Similarity=0.016 Sum_probs=236.0
Q ss_pred cccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccc
Q 009045 126 SGLGTSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 205 (546)
Q Consensus 126 ~~~g~~~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 205 (546)
+..|.. .+|...++.++...|.++.+++.+|.+....|++++|+..|+++++.+|++. .++..++.
T Consensus 53 ~~~g~~--~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------------~a~~~la~ 118 (656)
T PRK15174 53 LRKDET--DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------------EDVLLVAS 118 (656)
T ss_pred HhcCCc--chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHH
Confidence 445555 7788888888888999999999999888889999999999999988877641 23444444
Q ss_pred cccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 206 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
++ ...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|++..++..++ .
T Consensus 119 ~l-----------~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~ 186 (656)
T PRK15174 119 VL-----------LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-S 186 (656)
T ss_pred HH-----------HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-H
Confidence 44 34455688999999999888888888888898888999999999988888888888888777654 4
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQNHP-AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 364 (546)
+...|++++|+..++++++.+|... .....++.++. ..|++++|+..|++++..+|++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~---------------------~~g~~~eA~~~~~~al~~~p~~ 245 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC---------------------AVGKYQEAIQTGESALARGLDG 245 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCC
Confidence 7788899999988888888765332 22333344444 7888899999999999888888
Q ss_pred HHHHHHHHHHHHHcCChHH----HHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 009045 365 AHIWANLANAYYLTGDHRS----SGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV 440 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (546)
+.++..+|.++...|++++ |+..|++++..+|++..+
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a--------------------------------------- 286 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI--------------------------------------- 286 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH---------------------------------------
Confidence 8888889999998888885 788888888888876543
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009045 441 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLA 518 (546)
Q Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 518 (546)
+..+|.++...|++++|+..+++.+. +....++..+|.++...|++++|+..|++++..+|++...+..+|
T Consensus 287 -------~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 287 -------VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred -------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 44455555566666666666655332 444455556666666666666666666666666666555555556
Q ss_pred HHHHhcCChHHHHHHHHHHHHHh
Q 009045 519 NAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.++...|++++|+..|+++++..
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC
Confidence 66666666666666666666554
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6.9e-30 Score=278.70 Aligned_cols=366 Identities=15% Similarity=0.111 Sum_probs=290.6
Q ss_pred CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 132 SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 132 ~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
+...|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++.+|+................+.. ..+|
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~-----~~~g 358 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL-----IQQG 358 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH-----HHHH
Confidence 44889999999999999999999999999999999999999999999998765321100001111111111 1112
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH------
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA------ 285 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~------ 285 (546)
.. ++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..++.+
T Consensus 359 ~~----~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 359 DA----ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HH----HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 22 45677889999999999999999999999999999999999999999999999999988776655544
Q ss_pred ------------------------------------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc
Q 009045 286 ------------------------------------YFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329 (546)
Q Consensus 286 ------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 329 (546)
+...|++++|+..|+++++++|+++.+++.++.++.
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~-------- 506 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR-------- 506 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------
Confidence 446799999999999999999999999999888887
Q ss_pred ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------------
Q 009045 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL--------------- 394 (546)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------- 394 (546)
..|++++|+..|+++++.+|+++..++.++..+...+++++|+..++++...
T Consensus 507 -------------~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 507 -------------QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred -------------HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 8999999999999999999999999999998888889998888887764322
Q ss_pred -------------------------CCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHH
Q 009045 395 -------------------------EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 449 (546)
Q Consensus 395 -------------------------~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (546)
.|.++..+..++..... ...+..+...+...+ ...|+++.++.
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~--------~g~~~~A~~~y~~al----~~~P~~~~a~~ 641 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQ--------RGDYAAARAAYQRVL----TREPGNADARL 641 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHH--------cCCHHHHHHHHHHHH----HhCCCCHHHHH
Confidence 23333333222221111 112223333333333 34678899999
Q ss_pred HHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHH
Q 009045 450 GFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA------HIWANLANAY 521 (546)
Q Consensus 450 ~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~ 521 (546)
.++.++...|++++|+..+...+. +.....+..+|.++...|++++|+..|++++...|+++ .++..+|.++
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~ 721 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE 721 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH
Confidence 999999999999999999998665 45567788899999999999999999999999876543 4667789999
Q ss_pred HhcCChHHHHHHHHHHHH
Q 009045 522 YLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 522 ~~~g~~~~A~~~~~~al~ 539 (546)
...|++++|+..|++++.
T Consensus 722 ~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 722 AQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 999999999999999985
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.98 E-value=4.3e-29 Score=255.12 Aligned_cols=345 Identities=12% Similarity=0.005 Sum_probs=294.4
Q ss_pred hhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 009045 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQP 167 (546)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 167 (546)
-...+.+.|+...++ ..+...+...|++..+++..|.. +...|...|++++..+|+++.++..+|.++...|++
T Consensus 48 ~~~~~~~~g~~~~A~-~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGL-TLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhH-HHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 445577778888887 88899999999999999988876 678899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHH
Q 009045 168 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 247 (546)
Q Consensus 168 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 247 (546)
++|+..|++++++.|++ ...+..++.++. ..|++++|+..+++++...|+++.++..
T Consensus 127 ~~Ai~~l~~Al~l~P~~------------~~a~~~la~~l~-----------~~g~~~eA~~~~~~~~~~~P~~~~a~~~ 183 (656)
T PRK15174 127 ATVADLAEQAWLAFSGN------------SQIFALHLRTLV-----------LMDKELQAISLARTQAQEVPPRGDMIAT 183 (656)
T ss_pred HHHHHHHHHHHHhCCCc------------HHHHHHHHHHHH-----------HCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999997654 233444555444 4455699999999999999999988877
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCc
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 326 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 326 (546)
++ .+...|++++|+..+++++..+| ........++.++...|++++|+..|++++..+|++...+..+|.++.
T Consensus 184 ~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~----- 257 (656)
T PRK15174 184 CL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYY----- 257 (656)
T ss_pred HH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-----
Confidence 65 48899999999999999999876 344455667889999999999999999999999999999999998888
Q ss_pred cccccccccccchHHHhhcCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 327 VLAGAGANTGEGACLDQASAVNV----AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
..|++++ |+..|+++++++|+++.++..+|.++...|++++|+..+++++.++|++.
T Consensus 258 ----------------~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~--- 318 (656)
T PRK15174 258 ----------------QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP--- 318 (656)
T ss_pred ----------------HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---
Confidence 7888885 89999999999999999999999999999999999999999999999865
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHH
Q 009045 403 YAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAG 480 (546)
Q Consensus 403 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~ 480 (546)
.++..+|.++...|++++|+..+.+.+. +.....+
T Consensus 319 -------------------------------------------~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 319 -------------------------------------------YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred -------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 3456677888999999999999998665 3333445
Q ss_pred hhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 481 AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
..+|.++...|++++|+..|+++++.+|++. ...+++|+..|.++++..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAV 404 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhc
Confidence 5678899999999999999999999999875 234456666666666654
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.98 E-value=2.8e-29 Score=257.75 Aligned_cols=339 Identities=15% Similarity=0.094 Sum_probs=270.0
Q ss_pred hhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHH-----------------------
Q 009045 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVA----------------------- 144 (546)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l----------------------- 144 (546)
.+.++.++|+...++ ..+.++|+..|+...+++.+|.+ +...|...|..+.
T Consensus 166 ~a~~~~~l~~~~~Ai-~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 244 (615)
T TIGR00990 166 RAACHNALGDWEKVV-EDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAE 244 (615)
T ss_pred HHHHHHHhCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence 455677788888887 89999999999998888887766 3445544443332
Q ss_pred -------HhCCCCHHHHHHHHHHH---------------------------------H---HcCChhHHHHHHHHHHHHh
Q 009045 145 -------RKMPKNAHAHFLLGLMY---------------------------------Q---RLGQPLKAVSSYEKAEEIL 181 (546)
Q Consensus 145 -------~~~p~~~~~~~~lg~~~---------------------------------~---~~g~~~~A~~~~~~al~~~ 181 (546)
...|.+...+..+|..+ . ..++|++|+..|+++++..
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 245 SKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 23333322222222221 1 2357899999999999863
Q ss_pred cccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHH
Q 009045 182 LRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSS 261 (546)
Q Consensus 182 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 261 (546)
.. .| ..+.++..+|.++. ..|++++|+..|+++++.+|.+..++..+|.++...|++++|
T Consensus 325 ~~------~~---~~a~a~~~lg~~~~-----------~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 325 KL------GE---KEAIALNLRGTFKC-----------LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred CC------Ch---hhHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 11 12 22345556666554 455669999999999999999999999999999999999999
Q ss_pred HHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHH
Q 009045 262 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 341 (546)
Q Consensus 262 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (546)
+..|+++++.+|+++.+++.+|.+++..|++++|+.+|++++.++|++...+..+|.++.
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~-------------------- 444 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY-------------------- 444 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH--------------------
Confidence 999999999999999999999999999999999999999999999999999999988887
Q ss_pred HhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchh
Q 009045 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 421 (546)
Q Consensus 342 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~ 421 (546)
..|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++.+.|+....+..+..
T Consensus 445 -~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~-------------- 509 (615)
T TIGR00990 445 -KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP-------------- 509 (615)
T ss_pred -HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH--------------
Confidence 89999999999999999999999999999999999999999999999999999976443322211
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc--cchhhhHHhhHHHHHHHhccHHHHHHH
Q 009045 422 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKEC 499 (546)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~la~~~~~~g~~~~A~~~ 499 (546)
.+...+..+...|++++|+..+.+.+ ++....++..+|.++.+.|++++|+.+
T Consensus 510 -------------------------l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 510 -------------------------LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred -------------------------HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 11122223344689999999999854 455556788999999999999999999
Q ss_pred HHHHHHhCCCCHH
Q 009045 500 LLAALKADPKAAH 512 (546)
Q Consensus 500 ~~~al~~~p~~~~ 512 (546)
|++++++.+...+
T Consensus 565 ~e~A~~l~~~~~e 577 (615)
T TIGR00990 565 FERAAELARTEGE 577 (615)
T ss_pred HHHHHHHhccHHH
Confidence 9999999887554
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.3e-29 Score=245.31 Aligned_cols=428 Identities=16% Similarity=0.141 Sum_probs=291.7
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC--------CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS--------SSSREEKGLVHVARKMPKNAHAHFLLGLMYQR 163 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~--------~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~ 163 (546)
..|.++.++|+...++ ..|.++++++|..+.++..+|.+ ..+.+...+.++...+|.||.++..|+.-|+.
T Consensus 204 gig~Cf~kl~~~~~a~-~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf 282 (1018)
T KOG2002|consen 204 GIGHCFWKLGMSEKAL-LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF 282 (1018)
T ss_pred hhhhHHHhccchhhHH-HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh
Confidence 4566777777777776 77777777777777777766665 23445556777777777888888888877777
Q ss_pred cCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCccc-H
Q 009045 164 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ-A 242 (546)
Q Consensus 164 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~ 242 (546)
.|+|..+..+...++... ..-...+..++.+|..| ..+|+|++|..+|.++++.++++ .
T Consensus 283 K~dy~~v~~la~~ai~~t---------~~~~~~aes~Y~~gRs~-----------Ha~Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNT---------ENKSIKAESFYQLGRSY-----------HAQGDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred cccHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHH-----------HhhccHHHHHHHHHHHHccCCCCcc
Confidence 788888777777777652 11112233444555544 56667799999999999999988 7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG----DMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
-.++.+|.+++..|+++.|+.+|+++++..|++.+....||.+|...+ ..+.|..+..++++..|.+..+|+.++.
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999886 6788999999999999999999999998
Q ss_pred HHHHhhCccc-----------------cccccccccchHHHhhcCHHHHHHHHHHHHhc-----CCC-----CHHHHHHH
Q 009045 319 LLLCKYGSVL-----------------AGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPK-----AAHIWANL 371 (546)
Q Consensus 319 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-----~~~~~~~l 371 (546)
++........ ..+...-++|..+...|++.+|...|..++.. +++ +....+++
T Consensus 423 l~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 423 LLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 8864311100 12333445677777888888888888877765 111 23357778
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH------------HHHHhhhccCchhHHHH--------------
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS------------RIKDAERSQEPTEQLSW-------------- 425 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~------------~l~~~~~~~~~~~~~~~-------------- 425 (546)
|.++..+++++.|...|..+++.+|...+++..++.. .+...............
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcc
Confidence 8888888888888888888888888777777665421 11111111111100000
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH------------hcccHHHHHHHHHhhccchhh--hHHhhHHHHHHHhc
Q 009045 426 AGNEMASILREGDPVQIEPPIAWAGFAAVQK------------THHEVAAAFETEENELSKMEE--CAGAGESAFLDQAS 491 (546)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~l~~~~~--~~~~~la~~~~~~g 491 (546)
+-..+...+..... ..++.+...||.++. ..+.+++|+..|.+.+...+. .+-.++|.++...|
T Consensus 583 a~k~f~~i~~~~~~--~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 583 AKKKFETILKKTST--KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccHHHHHHhhhcc--CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 00111112222111 144556666666653 334567777777776654433 34447777777777
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 492 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
++.+|+..|.++.+-..++.++|.++|.||..+|+|..|++.|+.++..+-
T Consensus 661 ~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777777766666677777777777777777777777777776654
No 12
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-28 Score=221.72 Aligned_cols=386 Identities=16% Similarity=0.109 Sum_probs=267.0
Q ss_pred ccchhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009045 88 DVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQ 162 (546)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~ 162 (546)
......|+.+++.|++..+| ..|+.||++.|+..--+..+... +..+..+.+.++++++|+...+++.++..+.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAI-kyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAI-KYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHhhhhhhhhcccHHHHH-HHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34456899999999999998 99999999999864444443333 3377778899999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHHhc-cc-------------------------chhccchhhHHHHHHHhhcccc-----ccccC
Q 009045 163 RLGQPLKAVSSYEKAEEILL-RC-------------------------EADIARPELLSLVQIHHAQCLL-----PESSG 211 (546)
Q Consensus 163 ~~g~~~~A~~~~~~al~~~p-~~-------------------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~g 211 (546)
.+|++++|+....-..-... ++ ...+.-|.... +..+...-.. ....+
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f-i~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF-IASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH-HHHHHhhccccccccccCCC
Confidence 99999998755433221100 00 00000111110 1111110000 00000
Q ss_pred C---Ccc---cccc---ChhhHHHHHHHHHHHHhcC----ccc---------HHHHHHHHHHHHHcCChHHHHHHHHhhH
Q 009045 212 D---NSL---DKEL---EPEELEEILSKLKESMQSD----TRQ---------AVVWNTLGLILLKSGRLQSSISVLSSLL 269 (546)
Q Consensus 212 ~---~~~---~~~~---~~~~~~~A~~~~~~al~~~----p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al 269 (546)
. ... -.++ ....|.+|...+.+..... ..+ +.++...|..++-.|++-.|...|+++|
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 0 000 0001 1124555555555443211 111 5677778888888888888888888888
Q ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHH
Q 009045 270 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 270 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
+++|.+...|..+|.+|....+.++-...|.++..++|.+++.|+..|.+++ -++++++
T Consensus 354 ~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f---------------------lL~q~e~ 412 (606)
T KOG0547|consen 354 KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF---------------------LLQQYEE 412 (606)
T ss_pred hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH---------------------HHHHHHH
Confidence 8888888778888888888888888888888888888888888888888877 6777888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 009045 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNE 429 (546)
Q Consensus 350 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 429 (546)
|+..|++++.++|.+.-.+..++.+.+++++++++...|+.+.+..|+.++.+...+.....
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD------------------ 474 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD------------------ 474 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh------------------
Confidence 88888888888888888888888888888888888888888888888888777666655332
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--ch------hhhHHhhHHHH-HHHhccHHHHHHHH
Q 009045 430 MASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KM------EECAGAGESAF-LDQASAVNVAKECL 500 (546)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~------~~~~~~~la~~-~~~~g~~~~A~~~~ 500 (546)
++++++|++.|..++. +. ....+.+.|.+ +.-.+++..|+..+
T Consensus 475 ----------------------------qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll 526 (606)
T KOG0547|consen 475 ----------------------------QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLL 526 (606)
T ss_pred ----------------------------HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHH
Confidence 3444555555554333 22 11222333322 22348899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 501 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 501 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
+++++++|.+..++..||.+..++|+.++|+++|++++.+-.
T Consensus 527 ~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 527 RKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988753
No 13
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.4e-28 Score=230.01 Aligned_cols=290 Identities=14% Similarity=0.132 Sum_probs=242.1
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
...|...|.+.-...++...++..+|..|+.+++|++|..+|+.+-++.|-. +.-..++.-.-+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r---------v~~meiyST~LW------- 398 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR---------VKGMEIYSTTLW------- 398 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------ccchhHHHHHHH-------
Confidence 4556667777666778888999999999999999999999999999885532 221222211110
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
...+--+--.+.+..+..+|+.++.|..+|.||..+++++.|+++|++++.++|.+..+|..+|.-+....++
T Consensus 399 -------HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 399 -------HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF 471 (638)
T ss_pred -------HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH
Confidence 1111122223345677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
+.|..+|++++..+|.+..+|+.+|.+|. ++++++.|.-+|++|++++|.+......+|
T Consensus 472 d~a~~~fr~Al~~~~rhYnAwYGlG~vy~---------------------Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g 530 (638)
T KOG1126|consen 472 DKAMKSFRKALGVDPRHYNAWYGLGTVYL---------------------KQEKLEFAEFHFQKAVEINPSNSVILCHIG 530 (638)
T ss_pred HhHHHHHHhhhcCCchhhHHHHhhhhhee---------------------ccchhhHHHHHHHhhhcCCccchhHHhhhh
Confidence 99999999999999999999999999998 899999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 009045 373 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 452 (546)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 452 (546)
.++.++|+.++|+.+|++|+.++|.++...+..+.
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~--------------------------------------------- 565 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS--------------------------------------------- 565 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH---------------------------------------------
Confidence 99999999999999999999999998755544433
Q ss_pred HHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009045 453 AVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 532 (546)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 532 (546)
++...+++++|+..+++..++-|++..+++.+|.+|.+.|+.+.|+.
T Consensus 566 ---------------------------------il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 566 ---------------------------------ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred ---------------------------------HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 66777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhccc
Q 009045 533 CLEKVLMVYCSS 544 (546)
Q Consensus 533 ~~~~al~~~~~~ 544 (546)
.|.-|+++-+..
T Consensus 613 ~f~~A~~ldpkg 624 (638)
T KOG1126|consen 613 HFSWALDLDPKG 624 (638)
T ss_pred hhHHHhcCCCcc
Confidence 888888776554
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.5e-26 Score=223.30 Aligned_cols=371 Identities=15% Similarity=0.146 Sum_probs=238.3
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
+..|.+.|..+++..|+|..++++.|.+.+..|+|..|+.+|++++.++|... ++. ..++|.++..+|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-----aD~------rIgig~Cf~kl~~ 214 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK-----ADV------RIGIGHCFWKLGM 214 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC-----CCc------cchhhhHHHhccc
Confidence 45666777777777777777777777777777777777777777777766542 111 1122223323332
Q ss_pred Cc--------------------------cccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHH
Q 009045 213 NS--------------------------LDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 266 (546)
Q Consensus 213 ~~--------------------------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 266 (546)
.. .-.......+..++..+.++...++.+|.++..|+..++..|+|..+.....
T Consensus 215 ~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~ 294 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAE 294 (1018)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHH
Confidence 20 0001122344445555555555555555555555555555555555555555
Q ss_pred hhHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhhCccccccccccccchHHH
Q 009045 267 SLLAVDP---NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAGANTGEGACLD 342 (546)
Q Consensus 267 ~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (546)
.++...- --++.++.+|++|..+|+|++|..+|.++++.++++ .-.++.+|.+++
T Consensus 295 ~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i--------------------- 353 (1018)
T KOG2002|consen 295 HAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI--------------------- 353 (1018)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH---------------------
Confidence 5544321 123345555556666666666666666666555555 333444444444
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccC
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG----DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQE 418 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~ 418 (546)
..|+++.|+.+|+++++..|++.++...||.+|...+ ..+.|..+..++++..|.+..+|..++......-. ..
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~--~~ 431 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP--WA 431 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh--HH
Confidence 7777777777777777777777777777777777765 55677777777777777777777766654332111 11
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc----hhh--------hHHhhHHHH
Q 009045 419 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK----MEE--------CAGAGESAF 486 (546)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~~~--------~~~~~la~~ 486 (546)
....+..+. ..+...... -.+...+++|..++..|++.+|...+..++.. .+. ...|++|.+
T Consensus 432 sL~~~~~A~----d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 432 SLDAYGNAL----DILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred HHHHHHHHH----HHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 122222222 222222221 45678999999999999999999999886553 111 247899999
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 487 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 487 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+...++++.|.+.|..+++..|...+++..+|......++..+|...++.++.+-.+
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999998888999999999999999987643
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=2.4e-25 Score=232.63 Aligned_cols=377 Identities=12% Similarity=0.036 Sum_probs=275.4
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|.+. .++..++.++
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~------------~a~~~la~~l------ 93 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND------------DYQRGLILTL------ 93 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHH------
Confidence 7778888888888888888899999999999999999999999998876541 2223444443
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
...|++++|+..++++++.+|+++. +..+|.++...|++++|+..|++++++.|++..++..+|.++...|..+
T Consensus 94 -----~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 94 -----ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred -----HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 3456669999999999999999888 8889999999999999999999999999999999888999888888888
Q ss_pred HHHHHHHHHHhhCCCCHH-----HHHHHHHHHHH-----------------hhCccc----cccccc--c-----c-cch
Q 009045 294 QSAKCFQDLILKDQNHPA-----ALINYAALLLC-----------------KYGSVL----AGAGAN--T-----G-EGA 339 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~-----------------~~~~~~----~~~~~~--~-----~-~~~ 339 (546)
+|+..++++.. .|+... ....+..+... ...... ..+... . . ++.
T Consensus 168 ~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 168 PALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 88888876654 433200 00000000000 000000 000000 0 1 232
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHhh
Q 009045 340 CLDQASAVNVAKECLLAALKADPKAA-HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM----STRYAVAVSRIKDAE 414 (546)
Q Consensus 340 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~l~~~~ 414 (546)
+...|++++|+..|+++++..+..+ .+...+|.+|..+|++++|+..|++++..+|.+. .....++...+.
T Consensus 247 -Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~--- 322 (765)
T PRK10049 247 -LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE--- 322 (765)
T ss_pred -HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh---
Confidence 3577999999999999999864322 2344469999999999999999999999888762 222233222211
Q ss_pred hccCchhHHHHHHHHHHHHHhcC---------CCCCCCc--HHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHh
Q 009045 415 RSQEPTEQLSWAGNEMASILREG---------DPVQIEP--PIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGA 481 (546)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~ 481 (546)
.+.+..+...+....... ....|++ ..++..++.++...|++++|+..+.+.+. |.....++
T Consensus 323 -----~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 323 -----SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred -----cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 122223333333333221 1112232 34678899999999999999999998554 77778899
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 482 GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
.+|.++...|++++|+..++++++++|++..+++.+|.++...|++++|...++++++..|..
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999999999988754
No 16
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.6e-26 Score=216.33 Aligned_cols=218 Identities=17% Similarity=0.242 Sum_probs=205.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccc
Q 009045 139 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE 218 (546)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (546)
+.+..+..+|..|+.|..+|+||..+++++.|+++|++|++++|.. +++|..+|.. +
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f-------------------aYayTLlGhE----~ 465 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF-------------------AYAYTLLGHE----S 465 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-------------------chhhhhcCCh----h
Confidence 5677888999999999999999999999999999999999997643 3445556666 7
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
....+++.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.++|+.++|+..
T Consensus 466 ~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 466 IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 378 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 378 (546)
|++|+.++|.++-..+..+.++. ..+++++|+..+++.-++.|+...++..+|.+|.++
T Consensus 546 ~~~A~~ld~kn~l~~~~~~~il~---------------------~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRASILF---------------------SLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred HHHHHhcCCCCchhHHHHHHHHH---------------------hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999888 889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCChh
Q 009045 379 GDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 379 g~~~~A~~~~~~al~~~p~~~~ 400 (546)
|+.+.|+..|.-|..++|.-..
T Consensus 605 ~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 605 GNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred ccchHHHHhhHHHhcCCCccch
Confidence 9999999999999999998654
No 17
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.8e-24 Score=192.69 Aligned_cols=354 Identities=14% Similarity=0.123 Sum_probs=242.1
Q ss_pred hhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCCCchHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChhHH
Q 009045 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKGLVHVARKMP--KNAHAHFLLGLMYQRLGQPLKA 170 (546)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~a~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A 170 (546)
.|.++.++|....++ ..|...+...|-+..+|..++.+ -.-++........-| .+.-.-+.++.++....+.+++
T Consensus 170 ~Gvv~k~~~~~s~A~-~sfv~~v~~~P~~W~AWleL~~l--it~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 170 YGVVLKELGLLSLAI-DSFVEVVNRYPWFWSAWLELSEL--ITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred HHHHHHhhchHHHHH-HHHHHHHhcCCcchHHHHHHHHh--hchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554 55566666666666666555544 222222222332223 2333344556666666666666
Q ss_pred HHHHHHHHHH-hcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHH
Q 009045 171 VSSYEKAEEI-LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 249 (546)
Q Consensus 171 ~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 249 (546)
+.-++..+.. .|.+. -. ... .|.+ ...+.++++|+..|+.+.+.+|-..+-+-...
T Consensus 247 ~~k~e~l~~~gf~~~~------~i----~~~--~A~~-----------~y~~rDfD~a~s~Feei~knDPYRl~dmdlyS 303 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSM------YI----KTQ--IAAA-----------SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYS 303 (559)
T ss_pred HHHHHHHHhccCCccH------HH----HHH--HHHH-----------HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHh
Confidence 6666666555 22221 11 011 1111 23556677777777777777776655555555
Q ss_pred HHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc
Q 009045 250 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329 (546)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 329 (546)
++++-..+-.+---.-+.+..++.-.++....+|..|...++.++|+.+|+++++++|....+|..+|.-|.
T Consensus 304 N~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv-------- 375 (559)
T KOG1155|consen 304 NVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV-------- 375 (559)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH--------
Confidence 555555554443334445555666666667777777777788888888888888888888777777777776
Q ss_pred ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009045 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 409 (546)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 409 (546)
.+++...|++.|++|++++|.+..+|+.||++|.-++.+.=|+-+|++++...|.+
T Consensus 376 -------------EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD----------- 431 (559)
T KOG1155|consen 376 -------------EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND----------- 431 (559)
T ss_pred -------------HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-----------
Confidence 67777888888888888888888888888888888888888888888888777765
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHH
Q 009045 410 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFL 487 (546)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~ 487 (546)
+..|..+|.+|.+.++.++|+..|.+++. +.+..+++.+|.+|
T Consensus 432 -----------------------------------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 432 -----------------------------------SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred -----------------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 36788899999999999999999999665 44558899999999
Q ss_pred HHhccHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 488 DQASAVNVAKECLLAALK-------ADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 488 ~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
.+.++.++|..+|++.++ .+|+-..+...|+.-+.+.+++++|..+..+++.
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 999999999999999998 4565677888899999999999999988776654
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.7e-24 Score=226.09 Aligned_cols=298 Identities=16% Similarity=0.061 Sum_probs=241.2
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 135 REEKGLVHVARKMPK--NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 135 ~a~~~~~~~l~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
.+...+.+++..+|. ++.+|+.+|.++.. |++.+|+..|.+++...|+. ..+..++.++
T Consensus 459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~-------------~~~L~lA~al----- 519 (987)
T PRK09782 459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA-------------WQHRAVAYQA----- 519 (987)
T ss_pred hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch-------------HHHHHHHHHH-----
Confidence 344567777777888 99999999999997 89999999999999986642 1123333332
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
...|++++|+..|++++...|.+ ..++.+|.++...|++++|+.+|+++++.+|.+...+..++......|++
T Consensus 520 ------~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 520 ------YQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred ------HHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCH
Confidence 35567799999999988776654 56789999999999999999999999999999988888888888888999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
++|+..|+++++++|+ ...+..+|.++. +.|++++|+..|++++.++|+++.++.++|
T Consensus 593 ~eAl~~~~~AL~l~P~-~~a~~~LA~~l~---------------------~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG 650 (987)
T PRK09782 593 ELALNDLTRSLNIAPS-ANAYVARATIYR---------------------QRHNVPAAVSDLRAALELEPNNSNYQAALG 650 (987)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999996 888988888887 999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 009045 373 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 452 (546)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 452 (546)
.++...|++++|+..|+++++.+|+++. ++..+|
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~----------------------------------------------a~~nLA 684 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPDDPA----------------------------------------------LIRQLA 684 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH----------------------------------------------HHHHHH
Confidence 9999999999999999999999998753 455566
Q ss_pred HHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 009045 453 AVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 527 (546)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 527 (546)
.++...|++++|+..+++.+. +.........|.+..+..+++.|.+.+.++...+|+.. +....|.++...+++
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence 666677777777777766433 44445555666666666677777777777777766666 666666666666665
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.2e-23 Score=219.83 Aligned_cols=369 Identities=12% Similarity=0.032 Sum_probs=269.9
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhH-HHHHHHhhccccc-----
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL-SLVQIHHAQCLLP----- 207 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~----- 207 (546)
.++.+......+..|.+..++..++......|++++|...|+++... +..... .+... .++.++.......
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF-QGDARL--SQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC-Cccccc--CHHHHHHHHHHHHhCCcccchHHH
Confidence 55556677778888999999999999999999999999999999875 222111 11111 2222222221100
Q ss_pred cccCCC--ccccccChhhHH---HHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHH
Q 009045 208 ESSGDN--SLDKELEPEELE---EILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIG 280 (546)
Q Consensus 208 ~~~g~~--~~~~~~~~~~~~---~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 280 (546)
..+|.. ......-.|++. .+...+.+++...|. ++.+++.+|.++.. +++.+|+..|.+++...|++. ...
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L 513 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHR 513 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHH
Confidence 000100 000001134443 355666666777777 89999999999988 899999999999999999754 466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc
Q 009045 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 360 (546)
Q Consensus 281 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 360 (546)
.+|.++...|++++|+..|++++...|.+ ..+..++.++. +.|++++|+.+|+++++.
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all---------------------~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQ---------------------AAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhc
Confidence 67888889999999999999988775554 45667777766 889999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 009045 361 DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV 440 (546)
Q Consensus 361 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (546)
+|.....+..++......|++++|+..|+++++++|+ ...+..++...... . ....+ ...+......
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l-G-------~~deA----~~~l~~AL~l 638 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQR-H-------NVPAA----VSDLRAALEL 638 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC-C-------CHHHH----HHHHHHHHHh
Confidence 9998888888887788889999999999999999996 76666666533321 1 11112 2222333344
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009045 441 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLA 518 (546)
Q Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 518 (546)
.|+++.++..+|.++...|++++|+..+.+++. |....+++++|.++...|++++|+..|+++++++|+++.+....|
T Consensus 639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence 567778888888888888888888888887554 666677888888888888888888888888888888888888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhc
Q 009045 519 NAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
.+.....+++.|.+.++++..+-+
T Consensus 719 ~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 719 EQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc
Confidence 888888888888888888776544
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=7.5e-24 Score=207.06 Aligned_cols=289 Identities=15% Similarity=0.132 Sum_probs=204.3
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|...|.++++.+|++..++..+|.++...|++++|+..+++++.. |.. +. ......+..++.++
T Consensus 52 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~------~~-~~~~~~~~~La~~~------ 117 (389)
T PRK11788 52 DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDL------TR-EQRLLALQELGQDY------ 117 (389)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCC------CH-HHHHHHHHHHHHHH------
Confidence 77888888888888888888888888888888888888888888764 211 00 01112333444443
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh-----HHHHHHHHHHHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----DCIGNLGIAYFQ 288 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~ 288 (546)
...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++..
T Consensus 118 -----~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 118 -----LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred -----HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 3445557777777777777777777777777777777777777777777777666542 245567777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC-HHH
Q 009045 289 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-AHI 367 (546)
Q Consensus 289 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~ 367 (546)
.|++++|+..|+++++..|++..++..++.++. ..|++++|+..+++++..+|.+ ..+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLAL---------------------AQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 777777777777777777777766666666665 6777777777777777776664 345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHH
Q 009045 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 447 (546)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (546)
+..++.+|...|++++|+..++++++..|+...
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~----------------------------------------------- 284 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADL----------------------------------------------- 284 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-----------------------------------------------
Confidence 667777777777777777777777777665321
Q ss_pred HHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--cC
Q 009045 448 WAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL--TG 525 (546)
Q Consensus 448 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g 525 (546)
...++.++...|++++|+..++++++..|++......++..+.. .|
T Consensus 285 --------------------------------~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 285 --------------------------------LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred --------------------------------HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCc
Confidence 12344477888999999999999999999987666555544422 56
Q ss_pred ChHHHHHHHHHHHHHh
Q 009045 526 DHRSSGKCLEKVLMVY 541 (546)
Q Consensus 526 ~~~~A~~~~~~al~~~ 541 (546)
+..+|+..+++.++..
T Consensus 333 ~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 333 RAKESLLLLRDLVGEQ 348 (389)
T ss_pred cchhHHHHHHHHHHHH
Confidence 8899999999888743
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=1.5e-23 Score=219.11 Aligned_cols=369 Identities=11% Similarity=0.001 Sum_probs=274.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhh
Q 009045 144 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEE 223 (546)
Q Consensus 144 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 223 (546)
-...|-++.-..-...+....|+.++|+..|.++....|.+ ...+..++.++ ...|+
T Consensus 8 ~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~------------a~~~~~lA~~~-----------~~~g~ 64 (765)
T PRK10049 8 ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLP------------ARGYAAVAVAY-----------RNLKQ 64 (765)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHH-----------HHcCC
Confidence 44567788888888899999999999999999998765433 23344555554 34556
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
+++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++.. +..+|.++...|++++|+..|++++
T Consensus 65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 65 WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCccccc--cc---------------cccc-----cchHHHhhcCH---HHHHHHHHHHH
Q 009045 304 LKDQNHPAALINYAALLLCKYGSVLAG--AG---------------ANTG-----EGACLDQASAV---NVAKECLLAAL 358 (546)
Q Consensus 304 ~~~p~~~~~~~~l~~~~~~~~~~~~~~--~~---------------~~~~-----~~~~~~~~~~~---~~A~~~~~~al 358 (546)
+..|++..++..++.++........+. .. .... ++......+++ ++|+..++.++
T Consensus 144 ~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 144 PRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 999999999999988876432211000 00 0000 01111122334 78999999999
Q ss_pred hcCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHhhhccCchhHHHHHHHHH
Q 009045 359 KADPKAAH-------IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS-TRYAVAVSRIKDAERSQEPTEQLSWAGNEM 430 (546)
Q Consensus 359 ~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 430 (546)
+..|.++. ++.....++...|++++|+..|+++++..+..+. +...++...+.. .....+...+
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~--------g~~e~A~~~l 295 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL--------HQPEKAQSIL 295 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc--------CCcHHHHHHH
Confidence 76443322 2222123446789999999999999988643322 222223322221 1233344444
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchh-----------------hhHHhhHHHHHHHhccH
Q 009045 431 ASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME-----------------ECAGAGESAFLDQASAV 493 (546)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-----------------~~~~~~la~~~~~~g~~ 493 (546)
...+................++.++...|++++|+..+.......+ ..++..+|.++...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 4444322111111235677788889999999999999887554321 24567899999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 494 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 494 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
++|+..+++++...|+++.++..+|.++...|++++|++.+++++++.|..
T Consensus 376 ~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 376 PQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999999988654
No 22
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.2e-23 Score=186.84 Aligned_cols=318 Identities=15% Similarity=0.134 Sum_probs=264.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHH
Q 009045 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 227 (546)
Q Consensus 148 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 227 (546)
-.++-.++..|.++...|....|+..|..++...|-. . .+|..++ +.-.-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~-----W-------~AWleL~------------------~lit~ 210 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWF-----W-------SAWLELS------------------ELITD 210 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcc-----h-------HHHHHHH------------------Hhhch
Confidence 4568888999999999999999999999999875533 2 2232222 22333
Q ss_pred HHHHHHHHhcCc--ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 228 LSKLKESMQSDT--RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 228 ~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
++.....+..-| .+...-+.++.++....+.++++.-++..+.. .|.+...-...|.++..+.++++|+..|+...+
T Consensus 211 ~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k 290 (559)
T KOG1155|consen 211 IEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK 290 (559)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 344444443334 34445566888898989999999999999988 888888999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCcccc-------------ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLA-------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
.+|-..+-...+..+++.+...... ......-+|.+|...++.++|+.+|+++++++|....+|..+
T Consensus 291 nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLm 370 (559)
T KOG1155|consen 291 NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLM 370 (559)
T ss_pred cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHh
Confidence 9998777766666666544332211 144445589999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 451 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 451 (546)
|.-|..+++...|+..|++|++++|.+. .+|+++
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi~p~Dy----------------------------------------------RAWYGL 404 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDINPRDY----------------------------------------------RAWYGL 404 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhcCchhH----------------------------------------------HHHhhh
Confidence 9999999999999999999999999765 467777
Q ss_pred HHHHHhcccHHHHHHHHHhh--ccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH
Q 009045 452 AAVQKTHHEVAAAFETEENE--LSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 529 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~~--l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 529 (546)
|++|.-++...=|+-.|+++ +.|.+...|..||.||.+.++.++|+++|.+++.....+..++..||.+|.++++..+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 77888888888888888884 5688999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 009045 530 SGKCLEKVLMVY 541 (546)
Q Consensus 530 A~~~~~~al~~~ 541 (546)
|..+|++.++.+
T Consensus 485 Aa~~yek~v~~~ 496 (559)
T KOG1155|consen 485 AAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999999976
No 23
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.93 E-value=1.9e-23 Score=181.13 Aligned_cols=320 Identities=18% Similarity=0.125 Sum_probs=260.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHH
Q 009045 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 147 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
+|.+.+-++.+|.-++..|++..|+..|..|++.+|++ ..+++..+.+|..+|+. .-
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~------------Y~aifrRaT~yLAmGks-----------k~ 90 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN------------YQAIFRRATVYLAMGKS-----------KA 90 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh------------HHHHHHHHHHHhhhcCC-----------cc
Confidence 46678889999999999999999999999999997765 24556777787777777 99
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHH------------HHHHHHHHHcCC
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCI------------GNLGIAYFQSGD 291 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~------------~~la~~~~~~g~ 291 (546)
|+..+.+++++.|+...+...+|.+++++|.+++|...|++++.-+|.+. +++ ......++..|+
T Consensus 91 al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 91 ALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred chhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999552 222 233444566899
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 292 MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 292 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
+..|+.+....+++.|-+...+...+.+|. ..|+...||..++.+-++..++.+.++.+
T Consensus 171 ~~~ai~~i~~llEi~~Wda~l~~~Rakc~i---------------------~~~e~k~AI~Dlk~askLs~DnTe~~yki 229 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQPWDASLRQARAKCYI---------------------AEGEPKKAIHDLKQASKLSQDNTEGHYKI 229 (504)
T ss_pred hhhHHHHHHHHHhcCcchhHHHHHHHHHHH---------------------hcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999999999999999988888888887 89999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 451 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 451 (546)
+.+++..|+.+.++...+++++++|++...+-..-. +.... + ...-
T Consensus 230 s~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk--lkKv~-----------------K---------------~les 275 (504)
T KOG0624|consen 230 SQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK--LKKVV-----------------K---------------SLES 275 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH--HHHHH-----------------H---------------HHHH
Confidence 999999999999999999999999997644321110 00000 0 1111
Q ss_pred HHHHHhcccHHHHHHHHHhhccchhhhH------HhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 009045 452 AAVQKTHHEVAAAFETEENELSKMEECA------GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 525 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 525 (546)
+......++|.+++...++.+...+..+ .-.+..|+...+++.+|+..+..++..+|+++.++...+.+|....
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 2233455677777777777666444422 3345668888888999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhccc
Q 009045 526 DHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 526 ~~~~A~~~~~~al~~~~~~ 544 (546)
.|+.|+..|++|.++-++.
T Consensus 356 ~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHHHhcCccc
Confidence 9999999999998876543
No 24
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.3e-24 Score=191.72 Aligned_cols=190 Identities=18% Similarity=0.106 Sum_probs=128.7
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 422 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~ 422 (546)
-.|+.-.|...|..+|+++|.....|..+|.+|....+.++-...|.++..++|.++..++..+...+.- ++
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL--------~q 409 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL--------QQ 409 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH--------HH
Confidence 5566666666666666666665555666666666666666666666666666666666665555433311 11
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHH
Q 009045 423 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECL 500 (546)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 500 (546)
+..+. .-+.....+.|++...+..++.+..++++++++...|..... |..++.+...|.++...++|++|++.|
T Consensus 410 ~e~A~----aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 410 YEEAI----ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHH----HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 11222 222233334455556677777777788888888888888766 444567778899999999999999999
Q ss_pred HHHHHhCCC------CHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHhccc
Q 009045 501 LAALKADPK------AAHIWANLANAY-YLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 501 ~~al~~~p~------~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
.+++++.|. ++..+...|.+. ...+++.+|+..+++|+++-+.+
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC 536 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH
Confidence 999999998 666666666544 35689999999999999987654
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=5.2e-23 Score=201.12 Aligned_cols=272 Identities=18% Similarity=0.132 Sum_probs=219.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
.....+.+|..+...|++++|+..|+++++.+|++ ..++..++.++ ...|++++|+.
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~-----------~~~g~~~~A~~ 90 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET------------VELHLALGNLF-----------RRRGEVDRAIR 90 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc------------HHHHHHHHHHH-----------HHcCcHHHHHH
Confidence 45566777889999999999999999999986643 23344455544 45566699999
Q ss_pred HHHHHHhcCccc----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 230 KLKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 230 ~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
.+++++...+.. ...+..+|.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 91 IHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 999988753322 3577889999999999999999999999988888899999999999999999999999999988
Q ss_pred CCCCHH-----HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 009045 306 DQNHPA-----ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 380 (546)
Q Consensus 306 ~p~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 380 (546)
.|.+.. .+..++ .++...|++++|+..|+++++.+|++..++..+|.++...|+
T Consensus 171 ~~~~~~~~~~~~~~~la---------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 171 GGDSLRVEIAHFYCELA---------------------QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD 229 (389)
T ss_pred cCCcchHHHHHHHHHHH---------------------HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence 776543 222333 344488999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhccc
Q 009045 381 HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE 460 (546)
Q Consensus 381 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (546)
+++|+..|++++..+|.+..
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~------------------------------------------------------------ 249 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLS------------------------------------------------------------ 249 (389)
T ss_pred HHHHHHHHHHHHHHChhhHH------------------------------------------------------------
Confidence 99999999999987765321
Q ss_pred HHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 461 VAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 461 ~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
..+..++.+|...|++++|+..++++++..|+... +..+|.++...|++++|+..|+++++.
T Consensus 250 -----------------~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 250 -----------------EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 11123344777889999999999999999998754 489999999999999999999999998
Q ss_pred hcc
Q 009045 541 YCS 543 (546)
Q Consensus 541 ~~~ 543 (546)
.++
T Consensus 312 ~P~ 314 (389)
T PRK11788 312 HPS 314 (389)
T ss_pred CcC
Confidence 764
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=4.3e-22 Score=193.78 Aligned_cols=327 Identities=16% Similarity=0.164 Sum_probs=244.6
Q ss_pred cccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccc
Q 009045 126 SGLGTSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 205 (546)
Q Consensus 126 ~~~g~~~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 205 (546)
+.+|.. ..|++.+.++++.+|.++.+|+.||.+|..+|+.+++...+-.|-.
T Consensus 150 farg~~--eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-------------------------- 201 (895)
T KOG2076|consen 150 FARGDL--EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-------------------------- 201 (895)
T ss_pred HHhCCH--HHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--------------------------
Confidence 344666 7777788888888888888888888888888877766666555544
Q ss_pred cccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 206 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
++|.+...|..++....++|++.+|.-+|.+||+.+|.+....+..+.+
T Consensus 202 -------------------------------L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L 250 (895)
T KOG2076|consen 202 -------------------------------LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSL 250 (895)
T ss_pred -------------------------------cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 4677788999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC--C
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--K 363 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~ 363 (546)
|.++|+...|...|.+++...|....-+ ....+.. .+..+...++-+.|++.++.++.... .
T Consensus 251 ~~~~G~~~~Am~~f~~l~~~~p~~d~er-~~d~i~~---------------~~~~~~~~~~~e~a~~~le~~~s~~~~~~ 314 (895)
T KOG2076|consen 251 YQKTGDLKRAMETFLQLLQLDPPVDIER-IEDLIRR---------------VAHYFITHNERERAAKALEGALSKEKDEA 314 (895)
T ss_pred HHHhChHHHHHHHHHHHHhhCCchhHHH-HHHHHHH---------------HHHHHHHhhHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999998322111 1111111 13344467777999999999998432 2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCh--------------------------hH-HHHHHHHHHHHhh
Q 009045 364 AAHIWANLANAYYLTGDHRSSGKCLEKAAKL--EPNCM--------------------------ST-RYAVAVSRIKDAE 414 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~--------------------------~~-~~~l~~~~l~~~~ 414 (546)
..+.+..++.++.....++.|.......... .+++. .+ +..+++..+..
T Consensus 315 ~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~-- 392 (895)
T KOG2076|consen 315 SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKE-- 392 (895)
T ss_pred cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccc--
Confidence 4556778899999999999999888776651 11111 01 11111111111
Q ss_pred hccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccch---hhhHHhhHHHHHHHhc
Q 009045 415 RSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM---EECAGAGESAFLDQAS 491 (546)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~la~~~~~~g 491 (546)
.+ ..+.+...+........+.+..+..++.++...|++.+|+..+....+.. ....|+.+|.||..+|
T Consensus 393 --~e-------~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 393 --RE-------LLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred --cc-------hHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 00 11122222333332344677899999999999999999999999866632 3457999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009045 492 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538 (546)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (546)
.+++|+.+|++++...|++.++...|+.++.++|+.++|.+.++...
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999887643
No 27
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.5e-21 Score=179.10 Aligned_cols=383 Identities=15% Similarity=0.126 Sum_probs=280.3
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH------HHHhcccchhccchhhHHHHHHHhhccccccccCCCccccc
Q 009045 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKA------EEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE 218 (546)
Q Consensus 145 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (546)
..+..+....+..+.++.+..++++|...+.++ +..+|.+....-..+......-....+.++...|.. |
T Consensus 76 ~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~----y 151 (611)
T KOG1173|consen 76 KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKV----Y 151 (611)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeeh----h
Confidence 556678888999999999999999999998854 111111100000000000000001112222333444 6
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-----------------ChHHHHHHHHhhH----------hc
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-----------------RLQSSISVLSSLL----------AV 271 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----------------~~~~A~~~~~~al----------~~ 271 (546)
....++++|...|.+++..++.+.+++..+-..++... ...+=++.+-++. ..
T Consensus 152 ~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r 231 (611)
T KOG1173|consen 152 VALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTR 231 (611)
T ss_pred hhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccccc
Confidence 77788899999999999999988776665544333221 1111111111111 01
Q ss_pred CC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccc-------------cc
Q 009045 272 DP--------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL-------------AG 330 (546)
Q Consensus 272 ~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~-------------~~ 330 (546)
.| ++.+.....+..++..++|.+..+..+..++.+|-+...+.....++...++... ..
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~ 311 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSK 311 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCC
Confidence 12 3567788889999999999999999999999999887665333224443322211 14
Q ss_pred cccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 331 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
+..|+..|-+|...|++.+|..+|.++..++|....+|...|..+...|..++|+.+|..|-++.|........++....
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM 391 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 77888899999999999999999999999999999999999999999999999999999999999999888777776544
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchh---------hhHHh
Q 009045 411 KDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME---------ECAGA 481 (546)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~---------~~~~~ 481 (546)
.... .+-..+.+.....+.|.+|.++..+|.+....+.+.+|...|+..+.... ...+.
T Consensus 392 ~t~n------------~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 392 RTNN------------LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred Hhcc------------HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 2111 11233455666677899999999999999999999999999998763211 12367
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 482 GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+||.++.+.+++++|+.+|++++.+.|.++.++..+|.+|..+|+++.|+++|.++|-+-+.
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999987653
No 28
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.91 E-value=5.6e-22 Score=172.10 Aligned_cols=292 Identities=14% Similarity=0.130 Sum_probs=228.2
Q ss_pred hhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 009045 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQP 167 (546)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 167 (546)
-|+.+.-.|.+..++ ..|..|++.+|+++.+++.++.. ...-+...+.+++++.|+...+...+|.+++++|++
T Consensus 44 lGk~lla~~Q~sDAL-t~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 44 LGKELLARGQLSDAL-THYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHhhhHHHHH-HHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 466666677777777 89999999999999888887776 557778899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHH
Q 009045 168 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 247 (546)
Q Consensus 168 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 247 (546)
++|...|+..++.+|.+.........+..+.-+..+-. + +..++..|+...|+.+....+++.|.++..+..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~----q----l~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQ----Q----LKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHH----H----HHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 99999999999998865332211111111111111000 0 011346678899999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcc
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 327 (546)
++.||...|+...||..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+-.+-.+-.
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK------ 268 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK------ 268 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999998765432222110
Q ss_pred ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH----IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
..-.+..+.-....++|.++++..++.++.+|..+. ....+..|+..-|++.+|+..+.+++.++|++..++
T Consensus 269 ---v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 269 ---VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred ---HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence 000001122334678899999999999999888433 445667888889999999999999999999876544
No 29
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.2e-21 Score=180.67 Aligned_cols=325 Identities=13% Similarity=0.093 Sum_probs=256.0
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.+..|+|+.|+.+|..++.++|.+...|.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..++-+|+|++|+.
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc------------------------------------------------
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLA------------------------------------------------ 329 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~------------------------------------------------ 329 (546)
.|.+.|+.+|++......++.++.........
T Consensus 92 ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 92 AYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 99999999999998888887766322000000
Q ss_pred ---------------------------------------------------ccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 330 ---------------------------------------------------GAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 330 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
.+.....+|....+..++..|++.|..++
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 01111227888888999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--Hhhhcc----CchhHHHH-------
Q 009045 359 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK--DAERSQ----EPTEQLSW------- 425 (546)
Q Consensus 359 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~--~~~~~~----~~~~~~~~------- 425 (546)
.++ .+...+.+.+.+|+..|.+.+.+.....+++.......-+..++..... ...... .....+..
T Consensus 252 el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 252 ELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred hHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 999 8899999999999999999999999999887766544333333322111 110000 00011111
Q ss_pred -----HHHHHHHHH---hcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHH
Q 009045 426 -----AGNEMASIL---REGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNV 495 (546)
Q Consensus 426 -----~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~ 495 (546)
......+.+ .....+.|....--..-|..++..|+|..|+..|.+++. |.+...+.+.|.||.++|.+..
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHH
Confidence 111111111 111223344444556668899999999999999999776 5566778899999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 496 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 496 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
|+..++.+++++|+...+|...|.++..+.+|++|++.|++++++-++
T Consensus 411 aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 411 ALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 999999999999999999999999999999999999999999987654
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=5.2e-20 Score=188.81 Aligned_cols=418 Identities=10% Similarity=-0.022 Sum_probs=240.4
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCccc-------ccccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGD-------QSGLGTSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRL 164 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~-------~~~~g~~~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 164 (546)
..+...++.|+...++ ..|.++++..|++..+ +...| +..+|+..+++++..+|.....+..+|.++...
T Consensus 39 ~~aii~~r~Gd~~~Al-~~L~qaL~~~P~~~~av~dll~l~~~~G--~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 39 DSLIIRARAGDTAPVL-DYLQEESKAGPLQSGQVDDWLQIAGWAG--RDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHhCCCHHHHH-HHHHHHHhhCccchhhHHHHHHHHHHcC--CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 3455555566655554 5556666665554321 11122 225555555555522333333333445556666
Q ss_pred CChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHH
Q 009045 165 GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVV 244 (546)
Q Consensus 165 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 244 (546)
|++++|++.|+++++.+|++ + .++..++.++ ...++.++|+..+++++..+|.+...
T Consensus 116 gdyd~Aiely~kaL~~dP~n------~------~~l~gLa~~y-----------~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTN------P------DLISGMIMTQ-----------ADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCC------H------HHHHHHHHHH-----------hhcCCHHHHHHHHHHhcccCcchHHH
Confidence 66666666666666555443 1 1112223332 22333456666666665555553332
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH--------
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY-------- 316 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------- 316 (546)
..++.++...++..+|++.|+++++.+|++..++..+..+....|-...|.+...+--.........++..
T Consensus 173 -l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr 251 (822)
T PRK14574 173 -MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVR 251 (822)
T ss_pred -HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHh
Confidence 33344444445554466666666666666666655555555555555555444332110000000000000
Q ss_pred ---------------HHHHHHhhCcccc----ccc--cc-----cccchHHHhhcCHHHHHHHHHHHHhcC-CCCHHHHH
Q 009045 317 ---------------AALLLCKYGSVLA----GAG--AN-----TGEGACLDQASAVNVAKECLLAALKAD-PKAAHIWA 369 (546)
Q Consensus 317 ---------------~~~~~~~~~~~~~----~~~--~~-----~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 369 (546)
..--+........ .+. .. ...-..+...|++.++++.|+...... +--.-+..
T Consensus 252 ~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 252 MAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 0000000000000 000 00 012234457788999999998877544 22345677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhc-------
Q 009045 370 NLANAYYLTGDHRSSGKCLEKAAKLEPN------CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE------- 436 (546)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------- 436 (546)
..|..|...++.++|+.+|+.++.-.|. .......+....+. ..+ +..+...+......
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld-~e~-------~~~A~~~l~~~~~~~p~~~~~ 403 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE-SEQ-------LDKAYQFAVNYSEQTPYQVGV 403 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh-ccc-------HHHHHHHHHHHHhcCCcEEec
Confidence 7899999999999999999999886632 11112223222221 111 11121112222221
Q ss_pred ----CCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 009045 437 ----GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 510 (546)
Q Consensus 437 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 510 (546)
....+++-......++.++...|++.+|...++..+. |.+...+..+|.++...|.+.+|...++.+..++|++
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 1233455666778899999999999999999999555 6677778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
..+.+.+|.++..+|++.+|....++.++.+|+.
T Consensus 484 ~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 484 LILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 9999999999999999999999999999988754
No 31
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.9e-21 Score=167.77 Aligned_cols=274 Identities=12% Similarity=0.030 Sum_probs=179.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcC
Q 009045 159 LMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD 238 (546)
Q Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~ 238 (546)
.+|+..++...|-......+++....... ....+.. .+....+|.+|.++| -+.+|.+.++..++..
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~-~~~~~~d-wwWk~Q~gkCylrLg-----------m~r~AekqlqssL~q~ 253 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSG-STGCTLD-WWWKQQMGKCYLRLG-----------MPRRAEKQLQSSLTQF 253 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccc-cccchHh-HHHHHHHHHHHHHhc-----------ChhhhHHHHHHHhhcC
Confidence 35556677777776666665553111000 0111111 112223444443333 3377777777777665
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|. ++.+..|+.+|.+..+...|+..|...++..|.+...+..+++++..++++++|.++|+.+++.+|.+.++.--++.
T Consensus 254 ~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~ 332 (478)
T KOG1129|consen 254 PH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAV 332 (478)
T ss_pred Cc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeee
Confidence 53 56666777777777777777777777777777777777777777777777777777777777777777666544444
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
-|+ -.++.+-|+.+|++.+++.-.+++.+.++|.|++..++++-++..|++++....+.
T Consensus 333 ~yf---------------------Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~ 391 (478)
T KOG1129|consen 333 GYF---------------------YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP 391 (478)
T ss_pred ccc---------------------cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc
Confidence 443 55667777777777777777777777777777777777777777777766554322
Q ss_pred hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhh
Q 009045 399 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 478 (546)
Q Consensus 399 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 478 (546)
. ...+
T Consensus 392 ~---------------------------------------------------------------------------~aaD 396 (478)
T KOG1129|consen 392 G---------------------------------------------------------------------------QAAD 396 (478)
T ss_pred c---------------------------------------------------------------------------hhhh
Confidence 1 1234
Q ss_pred HHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 479 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
.||++|.+....|++..|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..|-.+.|
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 5666777777788888888888888888888888888888888888888888888888877664
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=2.1e-20 Score=168.21 Aligned_cols=359 Identities=16% Similarity=0.165 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
..++++|+.-|.....+.+|+..|+-.++- ..+.+-|.+-..+|++ +++..+|.+|+++
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivkn-----------------kmf~nag~lkmnigni----~~kkr~fskaikf 259 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKN-----------------KMFPNAGILKMNIGNI----HFKKREFSKAIKF 259 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcc-----------------cccCCCceeeeeecce----eeehhhHHHHHHH
Confidence 456777777777777777777777766653 2233445555566666 6677777777777
Q ss_pred HHHHHhcCccc-----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHH-----------------------
Q 009045 231 LKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL----------------------- 282 (546)
Q Consensus 231 ~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------------------- 282 (546)
|+-++..-|.- ..++.++|..+.+.|+|+.|+..|+.+++..|+... -++|
T Consensus 260 yrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 260 YRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred HHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhhhheecCcHHHHHHHHHHHhcC
Confidence 77776665532 345566666666666666666666666555544222 2222
Q ss_pred --------------------------------------------------------------------------------
Q 009045 283 -------------------------------------------------------------------------------- 282 (546)
Q Consensus 283 -------------------------------------------------------------------------------- 282 (546)
T Consensus 339 p~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la 418 (840)
T KOG2003|consen 339 PGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELA 418 (840)
T ss_pred CCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhh
Confidence
Q ss_pred -------HHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhhCccccc---------------cccccccch
Q 009045 283 -------GIAYFQSGDMEQSAKCFQDLILKDQNHP-AALINYAALLLCKYGSVLAG---------------AGANTGEGA 339 (546)
Q Consensus 283 -------a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~ 339 (546)
+.-+++.|+++.|++.++-.-+.+.... .+-.++..+++.++++..++ +....+.|.
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn 498 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGN 498 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCc
Confidence 3334445555555555543333222211 22344444555444444432 334456788
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCc
Q 009045 340 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEP 419 (546)
Q Consensus 340 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~ 419 (546)
+-...|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+.-.+--++..+++.++..+-.
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~-------- 570 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-------- 570 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------
Confidence 888899999999999999999999999999999999999999999999999888877888887777653211
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHH
Q 009045 420 TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAK 497 (546)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~ 497 (546)
.+...+ ....+.....+.|.+|.++..++.+|...|+-.+|+.++-.... |.+.+..-.+|..|....-+++|+
T Consensus 571 led~aq----aie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai 646 (840)
T KOG2003|consen 571 LEDPAQ----AIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAI 646 (840)
T ss_pred hhCHHH----HHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHH
Confidence 111111 22344555667789999999999999999999999998776544 444455556777888888899999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 498 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 498 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
.+|+++--+.|+...-....+.|+.+.|+|++|.+.|+..-..++.
T Consensus 647 ~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 647 NYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 9999999999998888888999999999999999999998887764
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.89 E-value=1.1e-22 Score=188.19 Aligned_cols=255 Identities=22% Similarity=0.206 Sum_probs=110.5
Q ss_pred ccChhhHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHH
Q 009045 218 ELEPEELEEILSKLKESMQS--DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 295 (546)
++..|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+++++|
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A 96 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEA 96 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 56778889999999776544 488999999999999999999999999999999999999999899888 799999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIWANLAN 373 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 373 (546)
+..++++.+..+ ++..+.....++. ..++++++...++++.... +.++..|..+|.
T Consensus 97 ~~~~~~~~~~~~-~~~~l~~~l~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 97 LKLAEKAYERDG-DPRYLLSALQLYY---------------------RLGDYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp ----------------------H-HH---------------------HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred cccccccccccc-ccchhhHHHHHHH---------------------HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 999999987664 3444544444444 8899999999999987655 678999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
++...|++++|+.+|+++++.+|++..+ +..++.
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~~P~~~~~----------------------------------------------~~~l~~ 188 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALELDPDDPDA----------------------------------------------RNALAW 188 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH-TT-HHH----------------------------------------------HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHH----------------------------------------------HHHHHH
Confidence 9999999999999999999999987643 445566
Q ss_pred HHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHH
Q 009045 454 VQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 531 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 531 (546)
++...|+++++...+..... +.+...+..+|.++...|++++|+.+|+++++.+|+++..+..+|.++...|+.++|.
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 67778888876666655332 4555678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 009045 532 KCLEKVLMVY 541 (546)
Q Consensus 532 ~~~~~al~~~ 541 (546)
.+++++++.+
T Consensus 269 ~~~~~~~~~l 278 (280)
T PF13429_consen 269 RLRRQALRLL 278 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999998765
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=2e-20 Score=188.71 Aligned_cols=249 Identities=14% Similarity=0.035 Sum_probs=204.4
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---------CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 290 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 290 (546)
..+++++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 356779999999999999999999999999887644 34789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 291 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
++++|+..|+++++++|++..+++.+|.++. ..|++++|+..++++++++|.++..+..
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~---------------------~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLF---------------------MAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 9999999999999999999999999998887 8899999999999999999998888777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHH
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLE-PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 449 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (546)
++.+++..|++++|+..+++++... |+++ ..+.
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~----------------------------------------------~~~~ 445 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNP----------------------------------------------ILLS 445 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCH----------------------------------------------HHHH
Confidence 7778888999999999999998775 4443 3466
Q ss_pred HHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 009045 450 GFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 527 (546)
Q Consensus 450 ~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 527 (546)
.+|.++...|++++|...+.+... +....++..++..|...|+ +|...+++.++..-....-...+..+|.-.|+.
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~ 523 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEA 523 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhh
Confidence 677788889999999999887544 3333556677777777774 777777776664333333334488888888888
Q ss_pred HHHHHHHHHHH
Q 009045 528 RSSGKCLEKVL 538 (546)
Q Consensus 528 ~~A~~~~~~al 538 (546)
+.+..+ +++.
T Consensus 524 ~~~~~~-~~~~ 533 (553)
T PRK12370 524 IAEKMW-NKFK 533 (553)
T ss_pred HHHHHH-HHhh
Confidence 888777 5554
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=2.4e-19 Score=168.34 Aligned_cols=310 Identities=14% Similarity=0.092 Sum_probs=257.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
..+.+.++-|...|..+++.+|....+|...+..-...|..++-...|++++...|.....|...+..+...|+...|..
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 34566778899999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCc------------cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGS------------VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
.+..+++.+|++.+.|+.-..+....... .......++..+.+..-+++.++|+.+++++++..|+..
T Consensus 606 il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~ 685 (913)
T KOG0495|consen 606 ILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH 685 (913)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH
Confidence 99999999999988886554443321111 011234455567777789999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcH
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 445 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (546)
..|..+|+++.++++.+.|...|...++..|.....|..++...-... .....+..+..+...+|.+.
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~------------~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG------------QLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc------------chhhHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999998887765322111 11234456666777788899
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhccch--------------------------------hhhHHhhHHHHHHHhccH
Q 009045 446 IAWAGFAAVQKTHHEVAAAFETEENELSKM--------------------------------EECAGAGESAFLDQASAV 493 (546)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--------------------------------~~~~~~~la~~~~~~g~~ 493 (546)
..|.....+-...|..+.|.....++++.. ++..+..+|..+....++
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~ 833 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKI 833 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 999999999999999988888777655422 223366788889999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 494 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 494 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
++|.++|.++++.+|++.++|.++-..+...|.-++-.+.|.+...
T Consensus 834 ~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 834 EKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999988888888877654
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.1e-20 Score=173.06 Aligned_cols=292 Identities=13% Similarity=0.073 Sum_probs=245.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 149 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
++.+.+...+..++..++|.+..+.++..++.+|-. +... -++.+ ++. +.|+..+-.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh------~~~~---~~~ia---~l~-----------el~~~n~Lf 298 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFH------LPCL---PLHIA---CLY-----------ELGKSNKLF 298 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCC------cchH---HHHHH---HHH-----------HhcccchHH
Confidence 567888889999999999999999999999997643 1111 11111 222 333336666
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
..-.+.++..|+.+..|+..|..|...|++.+|..+|.++..++|....+|...|..+.-.|..++|+.+|..|-++.|.
T Consensus 299 ~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 299 LLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 66677889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 388 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (546)
.......+|.-|. +.++++.|.++|.+++.+.|.++-++..+|.+.+..+.|.+|..+|
T Consensus 379 ~hlP~LYlgmey~---------------------~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 379 CHLPSLYLGMEYM---------------------RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred CcchHHHHHHHHH---------------------HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 8777777777766 8899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHH
Q 009045 389 EKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE 468 (546)
Q Consensus 389 ~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 468 (546)
+.++..-+.... +. +.-...+.++|.++.+++++++|+..+
T Consensus 438 ~~~l~~ik~~~~-----------------------------------e~----~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 438 QKALEVIKSVLN-----------------------------------EK----IFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHhhhccc-----------------------------------cc----cchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 999943222100 00 001135899999999999999999999
Q ss_pred Hhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 009045 469 ENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 523 (546)
Q Consensus 469 ~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 523 (546)
++++. +.+...+..+|.+|..+|+++.|+..|.+++-+.|++..+-..|+.+...
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99654 77778899999999999999999999999999999998777777766543
No 37
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.88 E-value=9.5e-20 Score=168.58 Aligned_cols=236 Identities=17% Similarity=0.121 Sum_probs=182.7
Q ss_pred ChhhHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHH
Q 009045 220 EPEELEEILSKLKESMQSDT----RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 295 (546)
..+..+.++..+.+++...| ..+..|+.+|.++...|++++|+..|+++++++|+++.+|..+|.++...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44667999999999996433 34778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 375 (546)
+..|+++++++|++..++.++|.++. ..|++++|+..|+++++.+|+++.... ...+.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~---------------------~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~ 175 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALY---------------------YGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLA 175 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHH
Confidence 99999999999999999999999887 899999999999999999999874222 22344
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 009045 376 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 455 (546)
Q Consensus 376 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (546)
...+++++|+..|.+.+...+.....+ .+. .
T Consensus 176 ~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~------------------------------------------------~ 206 (296)
T PRK11189 176 ESKLDPKQAKENLKQRYEKLDKEQWGW-NIV------------------------------------------------E 206 (296)
T ss_pred HccCCHHHHHHHHHHHHhhCCccccHH-HHH------------------------------------------------H
Confidence 567889999999988775543222111 111 1
Q ss_pred HhcccH--HHHHHHHHh------hccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Q 009045 456 KTHHEV--AAAFETEEN------ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGD 526 (546)
Q Consensus 456 ~~~~~~--~~A~~~~~~------~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~ 526 (546)
...|++ ++++..+.. .+.+....+|+++|.++...|++++|+.+|+++++.+| ++.+..+.+..+....++
T Consensus 207 ~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 207 FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 111111 112222221 12234457899999999999999999999999999996 667776666666554443
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=1.3e-19 Score=176.62 Aligned_cols=305 Identities=18% Similarity=0.229 Sum_probs=235.1
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+..|++++|..++.++++.+|.++.+|+.||.+|.++|+.+++...+-.|-.++|++.+.|..++....++|++.+|+-+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 34588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHH
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-----AHIWANLAN 373 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~ 373 (546)
|.++++.+|.+....+..+.++. +.|++..|+..|.+++...|.. ...-...+.
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~---------------------~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQ---------------------KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHH---------------------HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988887 8999999999999999999931 223344577
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHhh-----hcc------Cc-hhHHHHH-----HHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNC--MSTRYAVAVSRIKDAE-----RSQ------EP-TEQLSWA-----GNEMASIL 434 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~l~~~~-----~~~------~~-~~~~~~~-----~~~~~~~~ 434 (546)
.+...++-+.|++.++.++....+- ...+..++...+.... ... +. .+.-.+. ........
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 7888888899999999999833221 1112222221111100 000 00 0000000 00001122
Q ss_pred hcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc---chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC-C
Q 009045 435 REGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK-A 510 (546)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~ 510 (546)
.......++.+.+...++.+..+.++..+++..+...-. ......++.++.+|...|++.+|+.+|..++...+. +
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 223333334444577888888888888888887766333 344467889999999999999999999999987764 4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
...|+.+|.||..+|.+++|+++|++++.+-|..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 7899999999999999999999999999987653
No 39
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.87 E-value=1.6e-19 Score=173.19 Aligned_cols=403 Identities=15% Similarity=0.092 Sum_probs=292.1
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhC--CCCHHHHHHHHH-HHHHcCChhHHHHHHHHHHHH
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKM--PKNAHAHFLLGL-MYQRLGQPLKAVSSYEKAEEI 180 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~--p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~ 180 (546)
+.|++++...-....-|+..+.. ....|...++..+... |.+...+...+. |+.+.|.+++++.+..+++..
T Consensus 344 e~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~ 423 (799)
T KOG4162|consen 344 EQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISL 423 (799)
T ss_pred HHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 66777766655555555555443 5567777888888877 777777666655 455678999999999999985
Q ss_pred hcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHH
Q 009045 181 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQS 260 (546)
Q Consensus 181 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 260 (546)
.-.. .... ....+..+|.+|..+.......-.+.....+++..++++++.+|.|+.+.+.++.-|..+++.+.
T Consensus 424 ~~~~-----~~~l--~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~s 496 (799)
T KOG4162|consen 424 LGGQ-----RSHL--KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTS 496 (799)
T ss_pred hhhh-----hhhh--hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHH
Confidence 4111 1112 23455666666655544422333445566899999999999999999999999999999999999
Q ss_pred HHHHHHhhHhc-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccch
Q 009045 261 SISVLSSLLAV-DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 339 (546)
Q Consensus 261 A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 339 (546)
|....++++++ ..+++.+|..++.++...+++.+|+...+.++.-.|+|.........+-.
T Consensus 497 Al~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~------------------ 558 (799)
T KOG4162|consen 497 ALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL------------------ 558 (799)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh------------------
Confidence 99999999999 55778999999999999999999999999999999988766554444443
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhc----------------
Q 009045 340 CLDQASAVNVAKECLLAALKADPKAAH---------IWANLANAYYLTGDHRSSGKCLEKAAKL---------------- 394 (546)
Q Consensus 340 ~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------- 394 (546)
..++.++|+..+...+.+-..... .....+......++..+|+..++++...
T Consensus 559 ---~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 559 ---TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred ---hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 678899999998888776443222 2222233334445556666666555432
Q ss_pred ---CCCChhHHHHHHHHHHHHh--hhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q 009045 395 ---EPNCMSTRYAVAVSRIKDA--ERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE 469 (546)
Q Consensus 395 ---~p~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 469 (546)
.|.....|+..-...+..+ ...... .......+.+...+.+..+..|+..|..+...|+..+|...|.
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~-------~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGN-------DDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCC-------chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 1111122221111111000 000000 0112234444555567788899999999999999999999999
Q ss_pred h--hccchhhhHHhhHHHHHHHhccHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcccC
Q 009045 470 N--ELSKMEECAGAGESAFLDQASAVNVAKE--CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSSN 545 (546)
Q Consensus 470 ~--~l~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 545 (546)
. .++|........+|.++.+.|+-.-|.. ++..+++++|.++++|+.+|.++.+.|+.++|.++|.-|+++-.+.+
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 8 5568888889999999999999888877 99999999999999999999999999999999999999999987765
Q ss_pred C
Q 009045 546 L 546 (546)
Q Consensus 546 ~ 546 (546)
|
T Consensus 789 V 789 (799)
T KOG4162|consen 789 V 789 (799)
T ss_pred c
Confidence 4
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=3.4e-20 Score=171.53 Aligned_cols=221 Identities=15% Similarity=0.103 Sum_probs=178.0
Q ss_pred HcCChHHHHHHHHhhHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc
Q 009045 254 KSGRLQSSISVLSSLLAVDP----NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329 (546)
Q Consensus 254 ~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 329 (546)
..++.+.++..+.+++...| ..+..|+.+|.+|...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-------- 109 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-------- 109 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--------
Confidence 34577889999999996433 337789999999999999999999999999999999999999999888
Q ss_pred ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009045 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 409 (546)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 409 (546)
..|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++.+|+++...
T Consensus 110 -------------~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~------- 169 (296)
T PRK11189 110 -------------QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA------- 169 (296)
T ss_pred -------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-------
Confidence 999999999999999999999999999999999999999999999999999999876210
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHH
Q 009045 410 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQ 489 (546)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~ 489 (546)
.|.. +....+++++|+..+.+.....+...|. .+.+...
T Consensus 170 -------------------------------------~~~~---l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~ 208 (296)
T PRK11189 170 -------------------------------------LWLY---LAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFY 208 (296)
T ss_pred -------------------------------------HHHH---HHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHH
Confidence 1221 1234567888888887655433333332 3455666
Q ss_pred hccHHHH--H----HHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 490 ASAVNVA--K----ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 490 ~g~~~~A--~----~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
.|++..+ + ..++..+++.|...++|+++|.++...|++++|+.+|++++++.+.
T Consensus 209 lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 209 LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 6665433 2 2223334667778899999999999999999999999999987653
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=1e-19 Score=183.51 Aligned_cols=225 Identities=12% Similarity=0.013 Sum_probs=181.4
Q ss_pred CCCCHH--HHHHHHHHHHHc---CChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccCh
Q 009045 147 MPKNAH--AHFLLGLMYQRL---GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEP 221 (546)
Q Consensus 147 ~p~~~~--~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 221 (546)
.|.+.+ .++..|..+... +.+++|+.+|+++++++|+.. ..+..++.++..++... .....
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a------------~a~~~La~~~~~~~~~g--~~~~~ 317 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI------------APYCALAECYLSMAQMG--IFDKQ 317 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH------------HHHHHHHHHHHHHHHcC--Ccccc
Confidence 444444 345566655443 347899999999999987651 22333333332222110 01256
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (546)
+++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..+++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Q 009045 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAAHIWANLANAYYLTGD 380 (546)
Q Consensus 302 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 380 (546)
+++++|.+......++.++. ..|++++|+..+++++... |+++..+..+|.++...|+
T Consensus 398 Al~l~P~~~~~~~~~~~~~~---------------------~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITY---------------------YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK 456 (553)
T ss_pred HHhcCCCChhhHHHHHHHHH---------------------hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC
Confidence 99999998877666555555 6789999999999999875 7889999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 381 HRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 381 ~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
+++|...+++.....|........++
T Consensus 457 ~~eA~~~~~~~~~~~~~~~~~~~~l~ 482 (553)
T PRK12370 457 HELARKLTKEISTQEITGLIAVNLLY 482 (553)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHH
Confidence 99999999998888777654444443
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=1.5e-18 Score=178.15 Aligned_cols=353 Identities=11% Similarity=-0.005 Sum_probs=263.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChh
Q 009045 143 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 222 (546)
Q Consensus 143 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 222 (546)
..-..|..+...+..+.+..+.|+++.|+..|+++++.+|.+. +.... +..++ ...|
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~-----~av~d-------ll~l~-----------~~~G 82 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS-----GQVDD-------WLQIA-----------GWAG 82 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch-----hhHHH-------HHHHH-----------HHcC
Confidence 3456788999999999999999999999999999999987642 11111 11122 2335
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
+.++|+.++++++...|.....+..+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++
T Consensus 83 ~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 83 RDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 56999999999995455555566666889999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 382 (546)
...+|.+... ..++.++. ..++..+|+..++++++.+|++..++..+..++...|-..
T Consensus 163 ~~~dp~~~~~-l~layL~~---------------------~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 163 AERDPTVQNY-MTLSYLNR---------------------ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred cccCcchHHH-HHHHHHHH---------------------hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence 9999985543 33333332 5667767999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHH--HHHHHHHHHh----hhccCchhHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHH
Q 009045 383 SSGKCLEKAAKLEPNCMSTRY--AVAVSRIKDA----ERSQEPTEQLSWAGNEMASILREGDPVQI---EPPIAWAGFAA 453 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~~--~l~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~ 453 (546)
.|.+..++--.........+. ..+...+..+ ....+.......+...+..++.......+ ....+....-.
T Consensus 221 ~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 221 PALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 999777653322222211121 1111111111 11122333445555666666654333222 22334556667
Q ss_pred HHHhcccHHHHHHHHHhhc---cchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhc
Q 009045 454 VQKTHHEVAAAFETEENEL---SKMEECAGAGESAFLDQASAVNVAKECLLAALKADP------KAAHIWANLANAYYLT 524 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~ 524 (546)
++...+++.+++..|+... .+.+..+....|..|+..++.++|+..|++++.-.| ........|..+|...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 7888999999999999855 355777888999999999999999999999988653 2334457788899999
Q ss_pred CChHHHHHHHHHHHHH
Q 009045 525 GDHRSSGKCLEKVLMV 540 (546)
Q Consensus 525 g~~~~A~~~~~~al~~ 540 (546)
+++++|..++++..+.
T Consensus 381 e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQ 396 (822)
T ss_pred ccHHHHHHHHHHHHhc
Confidence 9999999999998874
No 43
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.9e-19 Score=164.99 Aligned_cols=372 Identities=17% Similarity=0.119 Sum_probs=265.9
Q ss_pred hhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009045 91 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLG 165 (546)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 165 (546)
...|+..+.-|++..++ ..|..+|.+.|.+---+..+... +...|.+.-.+.++++|.-+..|..+|..+.-+|
T Consensus 6 k~kgnaa~s~~d~~~ai-~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAI-RLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHhhcccccHHHHH-HHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 34677788889999998 99999999999743333333222 3345555566778899999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccccc---CCCc----------------------------
Q 009045 166 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS---GDNS---------------------------- 214 (546)
Q Consensus 166 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~---------------------------- 214 (546)
+|++|+..|.+.++.+|++. ....++..++... ++..
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~------------~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNK------------QLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred cHHHHHHHHHHHhhcCCchH------------HHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 99999999999999987652 3334454444111 1110
Q ss_pred ---------cccccChhhHHHHHHHHHHHHh--------------cCcc---------------------cHHHHHHHHH
Q 009045 215 ---------LDKELEPEELEEILSKLKESMQ--------------SDTR---------------------QAVVWNTLGL 250 (546)
Q Consensus 215 ---------~~~~~~~~~~~~A~~~~~~al~--------------~~p~---------------------~~~~~~~l~~ 250 (546)
+..++....+..|.-.+..+-. ..|. -......+|.
T Consensus 153 ~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 0001111111111111111000 0110 0223556888
Q ss_pred HHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccc
Q 009045 251 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 330 (546)
Q Consensus 251 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 330 (546)
......++..|++.|.+++.++ .+...+.+.+.+|+..|.+.+++....++++.......-+..++..+.+
T Consensus 233 aaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r-------- 303 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR-------- 303 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH--------
Confidence 8888999999999999999999 8888899999999999999999998888887766555555555555542
Q ss_pred cccccccchHHHhhcCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHcCChHHH
Q 009045 331 AGANTGEGACLDQASAVNVAKECLLAALKAD--------------------------PKAAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~g~~~~A 384 (546)
+|..+...++++.|+.+|.+++... |.-..--...|..++..|+|..|
T Consensus 304 ------~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 304 ------LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred ------hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 4667778888888888888877543 22233344568888999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHH
Q 009045 385 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 464 (546)
Q Consensus 385 ~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 464 (546)
+..|.+++..+|+++. .|.+.+.+|..++.+..|
T Consensus 378 v~~YteAIkr~P~Da~----------------------------------------------lYsNRAac~~kL~~~~~a 411 (539)
T KOG0548|consen 378 VKHYTEAIKRDPEDAR----------------------------------------------LYSNRAACYLKLGEYPEA 411 (539)
T ss_pred HHHHHHHHhcCCchhH----------------------------------------------HHHHHHHHHHHHhhHHHH
Confidence 9999999999988764 456666677777888888
Q ss_pred HHHHHh--hccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009045 465 FETEEN--ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 536 (546)
Q Consensus 465 ~~~~~~--~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (546)
+..... .+++.....|+..|.++..+.+|++|++.|+++++.+|++..+...+..|+..+.......+.+++
T Consensus 412 L~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 412 LKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 877766 445666788999999999999999999999999999999999999999998865444444444444
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.86 E-value=1.2e-18 Score=169.53 Aligned_cols=304 Identities=15% Similarity=0.089 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHH
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 232 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~ 232 (546)
.....|.+....|+++.|.+.+.++.+..|.+ .. .+...+.+ +...|+++.|..++.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~-------~~-----~~llaA~a-----------a~~~g~~~~A~~~l~ 142 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEP-------VL-----NLIKAAEA-----------AQQRGDEARANQHLE 142 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC-------HH-----HHHHHHHH-----------HHHCCCHHHHHHHHH
Confidence 44667888899999999999999998875532 11 11122222 245577799999999
Q ss_pred HHHhcCcccH-HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 009045 233 ESMQSDTRQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 311 (546)
Q Consensus 233 ~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 311 (546)
++.+..|++. .+....+.++...|+++.|...+++.++..|+++.++..++.++...|++++|.+.+.+..+....+..
T Consensus 143 ~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 143 EAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 9999988875 466667999999999999999999999999999999999999999999999999999999987655544
Q ss_pred HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCChHHHHHH
Q 009045 312 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP----KAAHIWANLANAYYLTGDHRSSGKC 387 (546)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~ 387 (546)
....+-.... .-....+..+++.+.+.++....| +++..+..++..+...|++++|...
T Consensus 223 ~~~~l~~~a~-----------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~ 285 (409)
T TIGR00540 223 EFADLEQKAE-----------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI 285 (409)
T ss_pred HHHHHHHHHH-----------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 3322111111 000133444556677888888777 5899999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHH
Q 009045 388 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 467 (546)
Q Consensus 388 ~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 467 (546)
++++++..|++....+.+ .........++..+++..
T Consensus 286 l~~~l~~~pd~~~~~~~~--------------------------------------------l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 286 IFDGLKKLGDDRAISLPL--------------------------------------------CLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred HHHHHhhCCCcccchhHH--------------------------------------------HHHhhhcCCCChHHHHHH
Confidence 999999999886432110 000111122334455555
Q ss_pred HHhhcc--chhh--hHHhhHHHHHHHhccHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 468 EENELS--KMEE--CAGAGESAFLDQASAVNVAKECLL--AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 468 ~~~~l~--~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
+++.+. |.+. .....+|.++.+.|++++|.++|+ ++++..|++.. +..+|.++.+.|+.++|.++|++++...
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 555443 4555 556689999999999999999999 68888897766 5599999999999999999999998876
No 45
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=1.4e-20 Score=162.46 Aligned_cols=212 Identities=17% Similarity=0.246 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
...-..+|.||.++|.+.+|.+.++.+++..| .++ .+..++.+|. +..+...|+..
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-------~~d------TfllLskvY~-----------ridQP~~AL~~ 278 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-------HPD------TFLLLSKVYQ-----------RIDQPERALLV 278 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-------chh------HHHHHHHHHH-----------HhccHHHHHHH
Confidence 34446799999999999999999999999754 233 2334444444 34556999999
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
|.+.++..|.+...+...++++..++++++|+++|+.+++.+|.+.++...+|.-|+--++.+-|+.+|++.+++.-.++
T Consensus 279 ~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp 358 (478)
T KOG1129|consen 279 IGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP 358 (478)
T ss_pred HhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHH
Q 009045 311 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKC 387 (546)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~ 387 (546)
+.+.++|.+++ ..++++-++..|++++....+ -.++|+++|.+....|++.-|..+
T Consensus 359 eLf~NigLCC~---------------------yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 359 ELFCNIGLCCL---------------------YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred HHHhhHHHHHH---------------------hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 99999999988 788899999999999987542 578999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHH
Q 009045 388 LEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 388 ~~~al~~~p~~~~~~~~l~~ 407 (546)
|+-++..++++..++.+++.
T Consensus 418 frlaL~~d~~h~ealnNLav 437 (478)
T KOG1129|consen 418 FRLALTSDAQHGEALNNLAV 437 (478)
T ss_pred HHHHhccCcchHHHHHhHHH
Confidence 99999999988765555543
No 46
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=3.4e-20 Score=172.57 Aligned_cols=256 Identities=18% Similarity=0.165 Sum_probs=214.7
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
.+|..+.+-|..-.++ -.|+.++..+|.++.+|..+|.+ .-..++.+++++++++|+|.+++..||..|...|.
T Consensus 290 ~eG~~lm~nG~L~~A~-LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAA-LAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHhcCCchHHH-HHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 4888999999977776 78999999999999999999998 55678899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCc--ccHHH
Q 009045 167 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT--RQAVV 244 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~ 244 (546)
-.+|+.++.+-|...|..... ..+..-...+. .........+..-.+.|-.+....| .++++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l--------------~~a~~~~~~~~--~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHL--------------VSAGENEDFEN--TKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHHHHhCccchhc--------------cccCccccccC--CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 999999999999875432110 00000000000 0012455667788888888888888 78999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 324 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 324 (546)
...||.+|...|+|++|+.+|+.||..+|++...|..||-.+..-.+..+|+..|.+|+++.|....+++++|..++
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m--- 509 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM--- 509 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHcCChHHHH
Q 009045 325 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----------AAHIWANLANAYYLTGDHRSSG 385 (546)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~~~~A~ 385 (546)
.+|.|++|+++|-.+|.+.+. +-.+|..|=.++..+++.+-+.
T Consensus 510 ------------------NlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 510 ------------------NLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ------------------hhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 999999999999999998665 1246666666677777666443
No 47
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=175.27 Aligned_cols=233 Identities=20% Similarity=0.260 Sum_probs=171.7
Q ss_pred cccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 217 KELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 217 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
.+++.|++.+|.-+|+.++..+|.++++|..||.+....++-..|+..++++++++|++..++..||..|...|.-.+|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANA 374 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~ 374 (546)
.++.+-+...|........ ..-. .............+..-.+.|..+....| .++++...||.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a--~~~~------------~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSA--GENE------------DFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHHHHHHHhCccchhcccc--Cccc------------cccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 9999999887754322110 0000 00000000112224455667777777777 689999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
|...|+|++|+.+|+.+|...|++. ..|..||-.
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~----------------------------------------------~lWNRLGAt 473 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDY----------------------------------------------LLWNRLGAT 473 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchH----------------------------------------------HHHHHhhHH
Confidence 9999999999999999999999875 345556655
Q ss_pred HHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 009045 455 QKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK 509 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 509 (546)
+....+.++|+..|.+++. |...+++|++|.+++.+|.|++|+++|-.||.+.+.
T Consensus 474 LAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 5555555555555555332 444455555555555555555555555555555443
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1.1e-18 Score=157.41 Aligned_cols=237 Identities=16% Similarity=0.098 Sum_probs=137.1
Q ss_pred ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccc
Q 009045 257 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTG 336 (546)
Q Consensus 257 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 336 (546)
++..|.++-..++.++.-++.++.+.|.+-+..|++++|.+.|++++..+.....+++++|..+.
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e--------------- 535 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE--------------- 535 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH---------------
Confidence 44555555555555555555555555555555555555555555555555555555555554444
Q ss_pred cchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhc
Q 009045 337 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS 416 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~ 416 (546)
.+|+.++|+++|-+.-.+--+++++++.++.+|..+.+..+|++++.++..+-|+++..+..++..+-.+..+.
T Consensus 536 ------~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 536 ------ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred ------HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence 45555555555555444444455555555555555555555555555555555555544444433221111110
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhh--ccchhhhHHhhHHHHHHHhccHH
Q 009045 417 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENE--LSKMEECAGAGESAFLDQASAVN 494 (546)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--l~~~~~~~~~~la~~~~~~g~~~ 494 (546)
. .+ ...-..-...|-+....-.++..|....-+++++.++.++ +.|....-...++.|+.+.|+|.
T Consensus 610 q----af--------q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 610 Q----AF--------QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred h----hh--------hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 0 00 0000011111223334445666677777788999999883 34444444558889999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 495 VAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 495 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
+|...|+..-...|.+.+.+..|-++.-.+|-
T Consensus 678 ka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999888888766663
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.85 E-value=1e-18 Score=158.06 Aligned_cols=202 Identities=19% Similarity=0.206 Sum_probs=181.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+..+..+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|++.|++++...|.+...+..++.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
. ..|++++|+..|++++... +.....+..+|.++...|++++|...+.+++..+|++
T Consensus 110 ~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 110 C---------------------QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred H---------------------HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 7 8899999999999999853 4567789999999999999999999999999998876
Q ss_pred hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhh
Q 009045 399 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 478 (546)
Q Consensus 399 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 478 (546)
...+.
T Consensus 169 ~~~~~--------------------------------------------------------------------------- 173 (234)
T TIGR02521 169 PESLL--------------------------------------------------------------------------- 173 (234)
T ss_pred hHHHH---------------------------------------------------------------------------
Confidence 43322
Q ss_pred HHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 479 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.+|.++...|++++|+.+++++++..|.++..+..++.++...|+.++|..+.+.+...+
T Consensus 174 ---~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 174 ---ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 233377788899999999999999989899999999999999999999999988877654
No 50
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.84 E-value=1.2e-18 Score=170.99 Aligned_cols=392 Identities=13% Similarity=0.073 Sum_probs=284.2
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 183 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 183 (546)
..|-+++..++....++..+|.+ ++.+|.++|.++.++|+.+++++-..+..|....+++.|....-++-+..|.
T Consensus 479 ~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a 558 (1238)
T KOG1127|consen 479 HALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA 558 (1238)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH
Confidence 44556666666666666666666 5666666777777777777777777777777777777776664444443221
Q ss_pred cchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHH
Q 009045 184 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 263 (546)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 263 (546)
... ...|.. .|-+ |++.+++..|+..|+.+++.+|.+..+|..+|.+|...|++..|++
T Consensus 559 ---------~~~-k~nW~~-------rG~y----yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 559 ---------FAC-KENWVQ-------RGPY----YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred ---------HHH-Hhhhhh-------cccc----ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHH
Confidence 110 111222 3444 6888999999999999999999999999999999999999999999
Q ss_pred HHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHh
Q 009045 264 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 343 (546)
Q Consensus 264 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (546)
.|.++..++|.+..+.+..+.+...+|+|.+|+..+...+............++.++.+. +..+.-
T Consensus 618 vF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~--------------akd~~~ 683 (1238)
T KOG1127|consen 618 VFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD--------------AKDSAI 683 (1238)
T ss_pred hhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--------------HHHHHH
Confidence 999999999999999999999999999999999999999988877777777888777643 223334
Q ss_pred hcCHHHHHHHHHHHHh-------cC-CCCHHHHHHHHHHHHH-----------------------cCCh------HHHHH
Q 009045 344 ASAVNVAKECLLAALK-------AD-PKAAHIWANLANAYYL-----------------------TGDH------RSSGK 386 (546)
Q Consensus 344 ~~~~~~A~~~~~~al~-------~~-p~~~~~~~~l~~~~~~-----------------------~g~~------~~A~~ 386 (546)
.|-..+|..++++.++ .. -++.-.|..+|.+..- ++.. --|.+
T Consensus 684 ~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~ 763 (1238)
T KOG1127|consen 684 TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYE 763 (1238)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHH
Confidence 4444555555555443 22 2333444444433221 1111 12333
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHH
Q 009045 387 CLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFE 466 (546)
Q Consensus 387 ~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 466 (546)
++-..+++... +..|++++...+.......+.......+...+.+.+.. ..++...|..+|.+ ...|++.-|..
T Consensus 764 c~~~hlsl~~~-~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L----~ann~~~WnaLGVl-sg~gnva~aQH 837 (1238)
T KOG1127|consen 764 CGIAHLSLAIH-MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL----CANNEGLWNALGVL-SGIGNVACAQH 837 (1238)
T ss_pred HhhHHHHHhhc-cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH----hhccHHHHHHHHHh-hccchhhhhhh
Confidence 34333333222 56788888888887766666555555555555444443 34567889999998 56689999998
Q ss_pred HHHh--hccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 467 TEEN--ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 467 ~~~~--~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.|.+ .+.+.....|.++|.++.+..+++-|...|.++..++|.+...|...+.+....|+.-++...|...-++.
T Consensus 838 CfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 838 CFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred hhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 8887 45577778899999999999999999999999999999999999999999999999999999988754443
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.84 E-value=9.6e-21 Score=175.27 Aligned_cols=254 Identities=19% Similarity=0.164 Sum_probs=107.3
Q ss_pred hhHHhhccchhhhhhHHHHHhHhcC--CCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 94 GKKINKLGKCRSRISSKMDSALEFG--VDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~--~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
+..+++.|+...++ ..+.+.+... |++...|...|.+ +...|.+.|++++..++.++..+..++.+ ...++
T Consensus 15 A~~~~~~~~~~~Al-~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKAL-EVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 55566777777776 6665544443 6666677767665 56777778888888888888888788777 67888
Q ss_pred hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcC--cccHHH
Q 009045 167 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD--TRQAVV 244 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~ 244 (546)
+++|+.+++++.+..++ +..+ .....+ +...++++++...++++.... +.++..
T Consensus 93 ~~~A~~~~~~~~~~~~~-------~~~l------~~~l~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 148 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGD-------PRYL------LSALQL-----------YYRLGDYDEAEELLEKLEELPAAPDSARF 148 (280)
T ss_dssp --------------------------------------H------------HHHTT-HHHHHHHHHHHHH-T---T-HHH
T ss_pred ccccccccccccccccc-------cchh------hHHHHH-----------HHHHhHHHHHHHHHHHHHhccCCCCCHHH
Confidence 88888888887765332 1111 111111 234566788888888866544 567778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 324 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 324 (546)
|..+|.++.+.|++++|+.+|+++++++|++..++..++.++...|+++++.+.+....+..|.++..+..+|.++.
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~--- 225 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL--- 225 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc---
Confidence 88888888888888888888888888888888888888888888888888888888877777777777777777777
Q ss_pred CccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 325 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
..|++++|+.+|+++++.+|+++.++..+|.++...|+.++|..+++++++.
T Consensus 226 ------------------~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 226 ------------------QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp ------------------HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ------------------cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888888998888888888888888888888888888888888888887653
No 52
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=1e-18 Score=144.40 Aligned_cols=206 Identities=20% Similarity=0.220 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
..+...||.-|+..|++..|...+++|++.+|+. ..+|..++.+|..+|.. +.|.+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~------------~~a~~~~A~~Yq~~Ge~-----------~~A~e~ 91 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY------------YLAHLVRAHYYQKLGEN-----------DLADES 91 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------------HHHHHHHHHHHHHcCCh-----------hhHHHH
Confidence 5678899999999999999999999999998765 35667777777777666 999999
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
|++++.++|++.+++++.|..++.+|++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|+++++++|+
T Consensus 92 YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 92 YRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred HHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999999875 4456788999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 388 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (546)
++.....++...+ ..|++-.|..++++.....+-..+.+.....+-...|+-+.+-.+=
T Consensus 172 ~~~~~l~~a~~~~---------------------~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 172 FPPALLELARLHY---------------------KAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred CChHHHHHHHHHH---------------------hcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999988888887 8899999999999998888888888888888889999999888888
Q ss_pred HHHHhcCCCChh
Q 009045 389 EKAAKLEPNCMS 400 (546)
Q Consensus 389 ~~al~~~p~~~~ 400 (546)
.+..+..|....
T Consensus 231 ~qL~r~fP~s~e 242 (250)
T COG3063 231 AQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhCCCcHH
Confidence 888888887654
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-19 Score=161.93 Aligned_cols=283 Identities=12% Similarity=0.040 Sum_probs=231.1
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
++...+|.+|+..|..+++..|+++..|.+.+.+++..|+|++|.-..++.++++|.....+...+.++..+++..+|.+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc-----c-cccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLA-----G-AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
.|+..- ++ ..+..+......... . ...-.-.+.|+...|++++|...--..+++++.+.++++..
T Consensus 139 ~~~~~~--------~~-~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vr 209 (486)
T KOG0550|consen 139 KLKSKQ--------AY-KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVR 209 (486)
T ss_pred Hhhhhh--------hh-HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhc
Confidence 776211 00 000000000000000 0 00011135667799999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 451 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 451 (546)
|.+++..++.+.|+.+|++++.++|+.......... +..-..|...
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~----------------------------------~k~le~~k~~ 255 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM----------------------------------PKKLEVKKER 255 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhh----------------------------------HHHHHHHHhh
Confidence 999999999999999999999999987654332211 1112467888
Q ss_pred HHHHHhcccHHHHHHHHHhhccchhh------hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 009045 452 AAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 525 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 525 (546)
|.-..+.|++.+|.+.|..++.-.+. ..+++.|.+..++|+..+|+..++.+++++|....++...|.|+..++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999997763332 447799999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcc
Q 009045 526 DHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 526 ~~~~A~~~~~~al~~~~~ 543 (546)
+|++|++.|+++++.-.+
T Consensus 336 ~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999999987544
No 54
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=2.7e-18 Score=141.88 Aligned_cols=205 Identities=16% Similarity=0.108 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
..+...||.-|+..|++..|...++++|+.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|..+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
..|++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|+++++++|+++
T Consensus 115 ---------------------~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 115 ---------------------AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred ---------------------hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 888999999999999984 344678899999999999999999999999999999876
Q ss_pred hHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc--hhh
Q 009045 400 STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK--MEE 477 (546)
Q Consensus 400 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~ 477 (546)
.... .++..+...|++..|...+...... ...
T Consensus 174 ~~~l----------------------------------------------~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A 207 (250)
T COG3063 174 PALL----------------------------------------------ELARLHYKAGDYAPARLYLERYQQRGGAQA 207 (250)
T ss_pred hHHH----------------------------------------------HHHHHHHhcccchHHHHHHHHHHhcccccH
Confidence 5443 3344445555555555555543221 122
Q ss_pred hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 009045 478 CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI 513 (546)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 513 (546)
..+.....+-...|+-+.+-++=.+.....|...+.
T Consensus 208 ~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 208 ESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 223323334556666666666666666666665543
No 55
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.84 E-value=1.9e-17 Score=173.09 Aligned_cols=362 Identities=13% Similarity=0.065 Sum_probs=248.8
Q ss_pred hHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 134 SREEKGLVHVARK--MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 134 ~~a~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
..+.+.+....+. .| +...+..+..+|.+.|++++|...|++..+ | +. ..|..+...
T Consensus 140 ~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~---------~~----~t~n~li~~----- 198 (697)
T PLN03081 140 RCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R---------NL----ASWGTIIGG----- 198 (697)
T ss_pred HHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C---------Ce----eeHHHHHHH-----
Confidence 4556666666553 34 567777888888888888888888877643 1 11 112222222
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCc------------------------------------ccHHHHHHHHHHHHHc
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDT------------------------------------RQAVVWNTLGLILLKS 255 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p------------------------------------~~~~~~~~l~~~~~~~ 255 (546)
+.+.|++++|+..|+++++... .+..++..+...|.+.
T Consensus 199 ------~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 199 ------LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred ------HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 2344556777777777765322 1233455677788888
Q ss_pred CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhhCcc------
Q 009045 256 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK--DQNHPAALINYAALLLCKYGSV------ 327 (546)
Q Consensus 256 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~------ 327 (546)
|++++|...|++.. +.+...|..+...|.+.|++++|+..|++.... .| +..++..+...+...+.-.
T Consensus 273 g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHH
Confidence 89999988888753 346778888888999999999999998888654 33 3344555444443221111
Q ss_pred --------ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC
Q 009045 328 --------LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL--EPN 397 (546)
Q Consensus 328 --------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~ 397 (546)
..+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.++|++.|++..+. .|+
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 11233444567788899999999999998754 35778999999999999999999999998764 454
Q ss_pred ChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhh
Q 009045 398 CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 477 (546)
Q Consensus 398 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 477 (546)
... +..+.. ...... ....+..-+.. +.......| +...|..+...+.+.|++++|...+.+.....+.
T Consensus 426 ~~T-~~~ll~-a~~~~g-------~~~~a~~~f~~-m~~~~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~ 494 (697)
T PLN03081 426 HVT-FLAVLS-ACRYSG-------LSEQGWEIFQS-MSENHRIKP-RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV 494 (697)
T ss_pred HHH-HHHHHH-HHhcCC-------cHHHHHHHHHH-HHHhcCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH
Confidence 322 221111 111111 11111111212 221122222 2356889999999999999999999886555556
Q ss_pred hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 478 CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
..|..+...+...|+++.|...+++.+++.|++...|..++.+|...|++++|.+.+++..+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 778889899999999999999999999999999999999999999999999999999987654
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.7e-18 Score=152.96 Aligned_cols=294 Identities=13% Similarity=0.081 Sum_probs=174.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccC
Q 009045 141 VHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE 220 (546)
Q Consensus 141 ~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 220 (546)
-+....-|+|...+..+|.++...|++.+|+..|+++..++|.. ......| +.++. .
T Consensus 222 le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~---------i~~MD~Y---a~LL~-----------~ 278 (564)
T KOG1174|consen 222 LHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN---------VEAMDLY---AVLLG-----------Q 278 (564)
T ss_pred HHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh---------hhhHHHH---HHHHH-----------h
Confidence 33344455666666666666666666666666666666553322 1111111 11111 2
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
.|+++.-...-...+..+.....-|+.-|..++..+++..|+.+-.++|..+|.+..++...|.++..+|+.++|+-.|+
T Consensus 279 eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred ccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHH
Confidence 23334444444444444444455555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHH-Hc
Q 009045 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA-NAYY-LT 378 (546)
Q Consensus 301 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~-~~ 378 (546)
.+..+.|...+.|..+..+|+ ..|++.+|.-..+.+++.-|.++.++..+| .++. .-
T Consensus 359 ~Aq~Lap~rL~~Y~GL~hsYL---------------------A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 359 TAQMLAPYRLEIYRGLFHSYL---------------------AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred HHHhcchhhHHHHHHHHHHHH---------------------hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc
Confidence 555555555555555555554 555555555555555555555555555554 2222 22
Q ss_pred CChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhc
Q 009045 379 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH 458 (546)
Q Consensus 379 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (546)
.--++|.+.+++++++.|.. ..+-..++.++...
T Consensus 418 ~~rEKAKkf~ek~L~~~P~Y----------------------------------------------~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPIY----------------------------------------------TPAVNLIAELCQVE 451 (564)
T ss_pred hhHHHHHHHHHhhhccCCcc----------------------------------------------HHHHHHHHHHHHhh
Confidence 22345555555555555543 34556677777888
Q ss_pred ccHHHHHHHHHhhccchhh-hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 009045 459 HEVAAAFETEENELSKMEE-CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 524 (546)
Q Consensus 459 ~~~~~A~~~~~~~l~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 524 (546)
|.+..++..+++.+...+. ..+..+|.++...+.+.+|+.+|..++.++|++..+.-.|-..-...
T Consensus 452 g~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred CccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 8888899998887765544 45668999999999999999999999999999988877776654443
No 57
>PLN02789 farnesyltranstransferase
Probab=99.84 E-value=3.8e-18 Score=156.93 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH--HHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM--EQSAKCF 299 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~ 299 (546)
..++|+..+.++++++|.+..+|..++.++..+| ++++++..+.+++..+|++..+|...+.++..+|+. ++++.++
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 3489999999999999999999999999999998 689999999999999999999999999999999874 7889999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-
Q 009045 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT- 378 (546)
Q Consensus 300 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~- 378 (546)
+++++.+|.+..+|..++.++. ..|+++++++++.++|+.+|.+..+|..++.++...
T Consensus 132 ~kal~~dpkNy~AW~~R~w~l~---------------------~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 132 RKILSLDAKNYHAWSHRQWVLR---------------------TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHhCcccHHHHHHHHHHHH---------------------HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcc
Confidence 9999999999999999998887 788899999999999999999999999999998776
Q ss_pred --CCh----HHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 379 --GDH----RSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 379 --g~~----~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
|.+ ++++.+..+++..+|++..+|..+..
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ 225 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILANPRNESPWRYLRG 225 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 333 46888888999999998776655433
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=2.6e-18 Score=155.41 Aligned_cols=203 Identities=19% Similarity=0.201 Sum_probs=178.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
.+..++.+|.++...|++++|+..++++++..|.. ...+..++.++ ...|++++|+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~-----------~~~~~~~~A~~ 86 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD------------YLAYLALALYY-----------QQLGELEKAED 86 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------------HHHHHHHHHHH-----------HHcCCHHHHHH
Confidence 47889999999999999999999999999986543 13344455544 45566699999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD--PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
.++++++..|.+..++..+|.++...|++++|+..|++++... +.....+..+|.++...|++++|...+.+++..+|
T Consensus 87 ~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 87 SFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999853 45677899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 009045 308 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387 (546)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 387 (546)
++...+..++.++. ..|++++|+..+++++...|.++..+..++.++...|+.++|..+
T Consensus 167 ~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 167 QRPESLLELAELYY---------------------LRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred CChHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99888888888877 899999999999999999888899999999999999999999999
Q ss_pred HHHHHhcCC
Q 009045 388 LEKAAKLEP 396 (546)
Q Consensus 388 ~~~al~~~p 396 (546)
.+.+....|
T Consensus 226 ~~~~~~~~~ 234 (234)
T TIGR02521 226 GAQLQKLFP 234 (234)
T ss_pred HHHHHhhCc
Confidence 888776543
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=4e-17 Score=157.90 Aligned_cols=304 Identities=11% Similarity=0.012 Sum_probs=226.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHH
Q 009045 152 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 231 (546)
Q Consensus 152 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 231 (546)
...+..|......|++++|.+...++.+..+ .|.... ...+.+ ....|+++.|..+|
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-------~p~l~~-----llaA~a-----------A~~~g~~~~A~~~l 141 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAE-------QPVVNY-----LLAAEA-----------AQQRGDEARANQHL 141 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-------chHHHH-----HHHHHH-----------HHHCCCHHHHHHHH
Confidence 3356778888889999999977777655311 122211 111111 24677889999999
Q ss_pred HHHHhcCcccHH-HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 232 KESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 232 ~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
.++.+.+|++.. .....+.++...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+.+..+..+.+.
T Consensus 142 ~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 142 ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence 999999998754 3345599999999999999999999999999999999999999999999999999999998877655
Q ss_pred HHHHHHH-HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009045 311 AALINYA-ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 389 (546)
Q Consensus 311 ~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 389 (546)
.....+- ..+... ........+-+...+.++..-+..|+++.++..++..+...|+.++|...++
T Consensus 222 ~~~~~l~~~a~~~l--------------~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 222 EHRAMLEQQAWIGL--------------MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4333111 111100 0000122334444555555545567799999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q 009045 390 KAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE 469 (546)
Q Consensus 390 ~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 469 (546)
++++..++ +... ...+. ...++.++++...+
T Consensus 288 ~~l~~~~~-~~l~----------------------------------------------~l~~~--l~~~~~~~al~~~e 318 (398)
T PRK10747 288 DGLKRQYD-ERLV----------------------------------------------LLIPR--LKTNNPEQLEKVLR 318 (398)
T ss_pred HHHhcCCC-HHHH----------------------------------------------HHHhh--ccCCChHHHHHHHH
Confidence 99995443 3211 11111 13367777777777
Q ss_pred hhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 470 NELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 470 ~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
..++ |.+...++.+|.++...+++++|.++|+++++..|++. .+..++.++.+.|+.++|..+|++++.+..
T Consensus 319 ~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 319 QQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 6444 55566788999999999999999999999999999865 467899999999999999999999998763
No 60
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=7.3e-17 Score=151.96 Aligned_cols=350 Identities=17% Similarity=0.097 Sum_probs=284.0
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 183 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 183 (546)
..|..+|+..|..-..|.....+ ....-+..+++++..-|+....|...+..++..|+...|...+.++++.+|.
T Consensus 537 AVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 537 AVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 56778888888766555543332 2244556889999999999999999999999999999999999999999776
Q ss_pred cchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHH
Q 009045 184 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 263 (546)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 263 (546)
++ .+|..-..+ .....+++.|..+|.++....|. ..+|+.-+.+...+++.++|+.
T Consensus 617 se------------eiwlaavKl-----------e~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 617 SE------------EIWLAAVKL-----------EFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred cH------------HHHHHHHHH-----------hhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHH
Confidence 42 222221111 35667889999999999987765 6788889999999999999999
Q ss_pred HHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHh
Q 009045 264 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 343 (546)
Q Consensus 264 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (546)
.++.+++..|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+-. +
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE---------------------k 731 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE---------------------K 731 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH---------------------H
Confidence 9999999999999999999999999999999999999999999999999998888776 7
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHH
Q 009045 344 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQL 423 (546)
Q Consensus 344 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~ 423 (546)
.|..-.|...++++.-.+|++...|......-++.|+.+.|...+.++++..|++...|..-....- ...+..
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~-~~~rkT------ 804 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEP-RPQRKT------ 804 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhcc-Ccccch------
Confidence 8899999999999999999999999999999999999999999999999999998766643322100 000000
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHH
Q 009045 424 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLL 501 (546)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~ 501 (546)
.....+.. ...++.+....+..+....++++|...|.++++ +...++|..+-..+.+.|.-++-.+.+.
T Consensus 805 -----ks~DALkk----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 805 -----KSIDALKK----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred -----HHHHHHHh----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 01111111 235678999999999999999999999999665 6666777766678889999999999999
Q ss_pred HHHHhCCCCHHHHHHHHH
Q 009045 502 AALKADPKAAHIWANLAN 519 (546)
Q Consensus 502 ~al~~~p~~~~~~~~lg~ 519 (546)
++..-.|.+...|.....
T Consensus 876 ~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 876 KCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHhccCCCCCcHHHHHhh
Confidence 999999999988876654
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.82 E-value=5e-17 Score=153.28 Aligned_cols=363 Identities=14% Similarity=0.136 Sum_probs=247.5
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+--+..+.+++..|.+++.+...|..+..+|+-++|..+.+.++..++.+ .-+|+.+|.++
T Consensus 24 kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S------------~vCwHv~gl~~------ 85 (700)
T KOG1156|consen 24 KKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS------------HVCWHVLGLLQ------ 85 (700)
T ss_pred HhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc------------chhHHHHHHHH------
Confidence 444566778999999999999999999999999999999999999976654 24566667664
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
....+|++|+++|+.|+.++|+|..+|.-++.+..++++++.....-.+.+++.|.....|...+..+...|++.
T Consensus 86 -----R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 86 -----RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred -----hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 294 QSAKCFQDLILKD---QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 294 ~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
.|....+...+.. |.....-.....++. ..++...|.+++|++.+..--..--+.......
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~----------------n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ 224 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQ----------------NQILIEAGSLQKALEHLLDNEKQIVDKLAFEET 224 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHH----------------HHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhh
Confidence 9999988877655 333322222222222 233446666666666655433333333445556
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHhhhcc-----------C-------------chhHHH
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI--KDAERSQ-----------E-------------PTEQLS 424 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l--~~~~~~~-----------~-------------~~~~~~ 424 (546)
.+.++..++++++|...|...+..+|++...+..+-.... ....... . ....+.
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~ 304 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELK 304 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhH
Confidence 6777777777777777777777777777654443322111 0000000 0 000000
Q ss_pred HHH-HHHHHHHhcCCCCCCCcHHHHHHHHHHHHhccc---HHHHHHHHHhhccch------------hh----hHHhhHH
Q 009045 425 WAG-NEMASILREGDPVQIEPPIAWAGFAAVQKTHHE---VAAAFETEENELSKM------------EE----CAGAGES 484 (546)
Q Consensus 425 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~l~~~------------~~----~~~~~la 484 (546)
... ..+...+..+.+ .+...+-..|..... .++-+..|...+... ++ ..++.++
T Consensus 305 ~~vdkyL~~~l~Kg~p------~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~la 378 (700)
T KOG1156|consen 305 EIVDKYLRPLLSKGVP------SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLA 378 (700)
T ss_pred HHHHHHHHHHhhcCCC------chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHH
Confidence 000 111112222111 222222222222111 112222222222211 11 3356788
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 485 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
..+...|+++.|..++..|+...|.-++.+...|+++...|++++|..+++++-++-
T Consensus 379 qh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 379 QHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999999999999999999887653
No 62
>PLN02789 farnesyltranstransferase
Probab=99.80 E-value=2.1e-17 Score=152.03 Aligned_cols=207 Identities=17% Similarity=0.148 Sum_probs=177.9
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
.+|...+.+++.++|.+..+|..+|.++..+| ++++++.+++++++.+|++ ..+|+..+.++..+|.
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn------------yqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN------------YQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc------------hHHhHHHHHHHHHcCc
Confidence 88999999999999999999999999999999 6899999999999998765 2345555555544443
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc---
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS--- 289 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--- 289 (546)
. .+++++.++.++++.+|++..+|..++.++...|++++|++++.++|+.+|.+..+|..++.+....
T Consensus 122 ~---------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 122 D---------AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred h---------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 1 1367899999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 290 GDM----EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 290 g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
|.+ ++++.+..+++..+|++..+|..++.++..... ..++..+|++.+.+++...|.++
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~-----------------~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE-----------------ALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc-----------------ccccchhHHHHHHHhhcccCCcH
Confidence 333 578889999999999999999999988862100 13566789999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 009045 366 HIWANLANAYYLT 378 (546)
Q Consensus 366 ~~~~~l~~~~~~~ 378 (546)
.++..|+.+|...
T Consensus 256 ~al~~l~d~~~~~ 268 (320)
T PLN02789 256 FALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999864
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=7.6e-17 Score=156.89 Aligned_cols=268 Identities=11% Similarity=0.040 Sum_probs=186.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhh
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP-AALINYAALLLCKY 324 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~ 324 (546)
...|.+....|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. ......+.++.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l--- 164 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL--- 164 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH---
Confidence 44566667778888888888777777777666777777777778888888888888777777764 34444566555
Q ss_pred CccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHH
Q 009045 325 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 404 (546)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 404 (546)
..|+++.|+..+++.++..|+++.++..++.++...|++++|...+.+..+....++.....
T Consensus 165 ------------------~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 165 ------------------AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred ------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 77778888888888888888888777888888888888888888877777664443332211
Q ss_pred H----HHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhH-
Q 009045 405 V----AVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA- 479 (546)
Q Consensus 405 l----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~- 479 (546)
+ ....+..... ... ...+...........++++.++..++..+...|++++|+..+.+.++..+...
T Consensus 227 l~~~a~~~~l~~~~~-~~~-------~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~ 298 (409)
T TIGR00540 227 LEQKAEIGLLDEAMA-DEG-------IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA 298 (409)
T ss_pred HHHHHHHHHHHHHHH-hcC-------HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc
Confidence 1 1111111110 000 11122222222222235678999999999999999999999999887444333
Q ss_pred ---HhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCChHHHHHHHH--HHHHHhc
Q 009045 480 ---GAGESAFLDQASAVNVAKECLLAALKADPKAA--HIWANLANAYYLTGDHRSSGKCLE--KVLMVYC 542 (546)
Q Consensus 480 ---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~~ 542 (546)
...........++.+.+++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ ++++..+
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p 368 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL 368 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC
Confidence 12222234456788999999999999999999 899999999999999999999999 4665544
No 64
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.80 E-value=1.3e-17 Score=163.78 Aligned_cols=361 Identities=17% Similarity=0.133 Sum_probs=267.4
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
...+-.+|-++++++|..+.++..||.+|...-+...|.++|++|.++++... ..+...+
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda------------eaaaa~a-------- 533 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA------------EAAAASA-------- 533 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh------------hhHHHHH--------
Confidence 35566688999999999999999999999999999999999999999976541 1111222
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 290 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 290 (546)
+.+.+..+++.|...+-.+-+..|.. ...|..+|..|...+++..|+..|+.++..+|.+...|..+|.+|...|
T Consensus 534 ---dtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG 610 (1238)
T KOG1127|consen 534 ---DTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG 610 (1238)
T ss_pred ---HHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC
Confidence 22467778899999977777776643 3466779999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC------
Q 009045 291 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA------ 364 (546)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------ 364 (546)
++..|++.|.++..++|.+....+..+.+.. ..|.|.+|+..+...+......
T Consensus 611 ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec---------------------d~GkYkeald~l~~ii~~~s~e~~~q~g 669 (1238)
T KOG1127|consen 611 RYSHALKVFTKASLLRPLSKYGRFKEAVMEC---------------------DNGKYKEALDALGLIIYAFSLERTGQNG 669 (1238)
T ss_pred ceehHHHhhhhhHhcCcHhHHHHHHHHHHHH---------------------HhhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999988887777766 8899999999999888765443
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------C-CCChhHHHHHHHHHHH--Hhh-----------------h-
Q 009045 365 -AHIWANLANAYYLTGDHRSSGKCLEKAAKL-------E-PNCMSTRYAVAVSRIK--DAE-----------------R- 415 (546)
Q Consensus 365 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~-p~~~~~~~~l~~~~l~--~~~-----------------~- 415 (546)
++.+.+++..+...|=+.+|..++++.++. . -++...|..++..... +.. .
T Consensus 670 LaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~ 749 (1238)
T KOG1127|consen 670 LAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKT 749 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 445555555555666666777777666543 2 2222223222211110 000 0
Q ss_pred -ccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh--------cccHHHHHHHHHhhcc--chhhhHHhhHH
Q 009045 416 -SQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT--------HHEVAAAFETEENELS--KMEECAGAGES 484 (546)
Q Consensus 416 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~l~--~~~~~~~~~la 484 (546)
.....+-+....+.....+.. ...+..|+++|..|.. +.+...|+..+.+++. ..+...|..||
T Consensus 750 ~~l~~~d~l~Lg~~c~~~hlsl-----~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLG 824 (1238)
T KOG1127|consen 750 GALKKNDLLFLGYECGIAHLSL-----AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALG 824 (1238)
T ss_pred ccCcchhHHHHHHHHhhHHHHH-----hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 000000001111111111111 1235679999988765 2244578888888555 56667788898
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 485 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
.+ ...|++.-|..+|-+.+...|.+...|.++|.++....+++.|...|.++..+.|.
T Consensus 825 Vl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 825 VL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL 882 (1238)
T ss_pred Hh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCch
Confidence 88 66689999999999999999999999999999999999999999999998877654
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.80 E-value=1.7e-16 Score=153.11 Aligned_cols=315 Identities=13% Similarity=0.070 Sum_probs=218.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHH
Q 009045 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 147 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
||+.+.++..+|.++...|+.+.|...+.++.+..+.+.. . .......+.. +...|++++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~e~~~~~a~~-----------~~~~g~~~~ 61 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT------E---RERAHVEALS-----------AWIAGDLPK 61 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC------H---HHHHHHHHHH-----------HHHcCCHHH
Confidence 7999999999999999999999999999999988664311 1 1112222322 245567799
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGR----LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
|...++++++.+|++..++.. +..+...|+ ...+.+.+......+|....++..+|.++..+|++++|+..++++
T Consensus 62 A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 62 ALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred HHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999887775 555555544 444444444444567777888889999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHc
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA----HIWANLANAYYLT 378 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~ 378 (546)
+++.|++...+..++.++. ..|++++|+.++++++...|..+ ..+..+|.++...
T Consensus 141 l~~~p~~~~~~~~la~i~~---------------------~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLE---------------------MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HhhCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 9999999999888888887 89999999999999999877432 3567899999999
Q ss_pred CChHHHHHHHHHHHhcCCCChhHHH--HH-HHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 009045 379 GDHRSSGKCLEKAAKLEPNCMSTRY--AV-AVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 455 (546)
Q Consensus 379 g~~~~A~~~~~~al~~~p~~~~~~~--~l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (546)
|++++|+..|++++...|....... .. ............... .-|-.+....
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-------------------------~~w~~~~~~~ 254 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG-------------------------DRWEDLADYA 254 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH-------------------------HHHHHHHHHH
Confidence 9999999999999876663221111 11 111111100001000 1111111000
Q ss_pred HhcccHHHHHHHHHhhcc-chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcC
Q 009045 456 KTHHEVAAAFETEENELS-KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK---------AAHIWANLANAYYLTG 525 (546)
Q Consensus 456 ~~~~~~~~A~~~~~~~l~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g 525 (546)
..... ..........+.++...|+.++|...++........ ........+.+++..|
T Consensus 255 -------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 255 -------------AWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred -------------HhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 00000 000111123445677777888888877776553322 2556678899999999
Q ss_pred ChHHHHHHHHHHHHHh
Q 009045 526 DHRSSGKCLEKVLMVY 541 (546)
Q Consensus 526 ~~~~A~~~~~~al~~~ 541 (546)
++++|+..+..++.+.
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999876
No 66
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.79 E-value=2.7e-15 Score=158.73 Aligned_cols=347 Identities=12% Similarity=0.051 Sum_probs=257.9
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
..|...|..... .+...|..+-..+.+.|++++|...|++..+.... |+. ..+..+...|
T Consensus 423 ~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~-------pD~----~tynsLI~~y------ 482 (1060)
T PLN03218 423 KEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK-------ADC----KLYTTLISTC------ 482 (1060)
T ss_pred HHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-------CCH----HHHHHHHHHH------
Confidence 455555544432 46778888889999999999999999998876432 222 1222222222
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--CCCChHHHHHHHHHHHHcC
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSG 290 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g 290 (546)
.+.|++++|...|+++.+... .+...|..+...|.+.|++++|+..|...... .| +...|..+...|.+.|
T Consensus 483 -----~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 483 -----AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSG 556 (1060)
T ss_pred -----HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCC
Confidence 355667999999999987643 36789999999999999999999999998765 34 4778999999999999
Q ss_pred CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC-CCCH
Q 009045 291 DMEQSAKCFQDLILK----DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAA 365 (546)
Q Consensus 291 ~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 365 (546)
++++|.+.|++.... .|+ ...+..+...|. +.|++++|.+.|+.+.+.. +.+.
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~---------------------k~G~ldeA~elf~~M~e~gi~p~~ 614 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPD-HITVGALMKACA---------------------NAGQVDRAKEVYQMIHEYNIKGTP 614 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHcCCCCCh
Confidence 999999999998763 344 445655655555 8999999999999999876 4478
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKL--EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE 443 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (546)
..|..+...|.+.|++++|+..|++..+. .|+ ...+..+.. .+.... .+..+..-+......+. ..
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~-a~~k~G-------~~eeA~~l~~eM~k~G~---~p 682 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVD-VAGHAG-------DLDKAFEILQDARKQGI---KL 682 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH-HHHhCC-------CHHHHHHHHHHHHHcCC---CC
Confidence 89999999999999999999999999876 454 222222222 111111 11222222222222221 23
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHhhcc---chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 009045 444 PPIAWAGFAAVQKTHHEVAAAFETEENELS---KMEECAGAGESAFLDQASAVNVAKECLLAALKA--DPKAAHIWANLA 518 (546)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 518 (546)
+...|..+...|.+.|++++|...|..... ..+...|..+...|.+.|++++|++.|++.... .| +..+|..+-
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence 456899999999999999999999987543 334567889999999999999999999998764 34 466778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHHh
Q 009045 519 NAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
..+.+.|++++|..+|.++++..
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999988754
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.5e-16 Score=137.69 Aligned_cols=227 Identities=15% Similarity=0.193 Sum_probs=189.0
Q ss_pred CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 132 SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 132 ~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
+.++|.+.|..+++.+|...+++..||++|...|..+.|+..-+..++. |++... ....+...+|
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----------pdlT~~-----qr~lAl~qL~ 114 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----------PDLTFE-----QRLLALQQLG 114 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----------CCCchH-----HHHHHHHHHH
Confidence 6799999999999999999999999999999999999999998887763 333211 1222334455
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-----hHHHHHHHHHH
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-----CDCIGNLGIAY 286 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 286 (546)
+. |+..|-++.|...|...++...--..++-.|..+|....+|++|++.-++..++.++. +..+..|+..+
T Consensus 115 ~D----ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 115 RD----YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HH----HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 55 7788888999999998887655556788889999999999999999999988887754 45677888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC-H
Q 009045 287 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-A 365 (546)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~ 365 (546)
....+.+.|+..+.++++.+|++..+-+.+|.+.. ..|+|+.|++.++.+++.+|+. +
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~---------------------~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVEL---------------------AKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH---------------------hccchHHHHHHHHHHHHhChHHHH
Confidence 88899999999999999999999888888887777 8899999999999999998884 5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
++.-.|..+|..+|+.++.+..+.++.+..+..
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 677888899999999999999999998887764
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.6e-16 Score=141.92 Aligned_cols=254 Identities=13% Similarity=0.069 Sum_probs=161.5
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
++.+|+..|+++.-++|......-..|.++...|+++.-.......+.++.....-|+--+.+.+..+++..|+.+-+++
T Consensus 247 dn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~ 326 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKC 326 (564)
T ss_pred CchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 33555555555555555555555555555555555555555555555554444444555555555555555555555555
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 382 (546)
++.+|.+..+++..|.++. +.|+.++|+-.|+.+..+.|...+.|..|-.+|...|++.
T Consensus 327 I~~~~r~~~alilKG~lL~---------------------~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLI---------------------ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hccCcccchHHHhccHHHH---------------------hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 5555555555555554444 5555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH-HH-HHhccc
Q 009045 383 SSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA-AV-QKTHHE 460 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~~ 460 (546)
+|...-+.+++..|.+...+. .+| .+ .....-
T Consensus 386 EA~~~An~~~~~~~~sA~~Lt----------------------------------------------L~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSARSLT----------------------------------------------LFGTLVLFPDPRM 419 (564)
T ss_pred HHHHHHHHHHHHhhcchhhhh----------------------------------------------hhcceeeccCchh
Confidence 555555555555555443332 222 11 122234
Q ss_pred HHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009045 461 VAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538 (546)
Q Consensus 461 ~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (546)
-++|..++.+.+. |....+...+|.++...|.+++++..+++.+...|++ ..+..||.++...+.+++|+++|..|+
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5788888888665 5555778889999999999999999999999999875 589999999999999999999999999
Q ss_pred HHhccc
Q 009045 539 MVYCSS 544 (546)
Q Consensus 539 ~~~~~~ 544 (546)
.+-|.+
T Consensus 499 r~dP~~ 504 (564)
T KOG1174|consen 499 RQDPKS 504 (564)
T ss_pred hcCccc
Confidence 987654
No 69
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=6.2e-15 Score=134.11 Aligned_cols=406 Identities=13% Similarity=0.057 Sum_probs=278.5
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 183 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 183 (546)
+.|+..|..+.-+...|...|.. +..+|...|+++|..+..+...|...+.+-++......|...+.+|+.+.|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 56666666666555566655555 4577888999999999999999999999999999999999999999998664
Q ss_pred cchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHH
Q 009045 184 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 263 (546)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 263 (546)
- -..|+.....-..+|+. ..|...|++-++-.|+ ..+|......-.+.+..+.|..
T Consensus 140 V------------dqlWyKY~ymEE~LgNi-----------~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 140 V------------DQLWYKYIYMEEMLGNI-----------AGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred H------------HHHHHHHHHHHHHhccc-----------HHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHH
Confidence 2 13344444443444444 8888888888888775 5677777777777778888888
Q ss_pred HHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHhhCccccc-------ccccc
Q 009045 264 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL-INYAALLLCKYGSVLAG-------AGANT 335 (546)
Q Consensus 264 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~~~~~-------~~~~~ 335 (546)
.|++-+-.+|+ ...|...+..-.+.|+..-|...|++|+....++...- ...+.+......+...- +....
T Consensus 196 IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 196 IYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred HHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88887777765 66677777777777777777777777776554433221 11111111000000000 00000
Q ss_pred ----------ccchHHHhhcC---HHHHH-----HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 336 ----------GEGACLDQASA---VNVAK-----ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 336 ----------~~~~~~~~~~~---~~~A~-----~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
..-....+-|+ .++++ -.|++.++.+|.+.++|+..-.+-...|+.+.-.+.|++++.--|.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 00001112232 22332 2466778889999999999999999999999999999999987775
Q ss_pred ChhHHH--HHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccch
Q 009045 398 CMSTRY--AVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM 475 (546)
Q Consensus 398 ~~~~~~--~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 475 (546)
...-.+ ......++-+....-..+.......-....+..........+.+|...+.....+.+...|...+..++...
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c 434 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC 434 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC
Confidence 432211 111111111111111122233333444455565666667888999999999999999999999999988866
Q ss_pred hhhHHh-hHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 476 EECAGA-GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 476 ~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
+..-.+ +.-.+-.++++++.+...|++-++..|.+..+|...|.+-..+|+.+.|...|+-|++
T Consensus 435 PK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 435 PKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 664443 5556677899999999999999999999999999999999999999999999998875
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.77 E-value=1.3e-16 Score=153.17 Aligned_cols=245 Identities=18% Similarity=0.178 Sum_probs=198.7
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-- 306 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 306 (546)
..|....+...++..|..+|+|++|+..++.++.. .|.-......+|.+|..++++.+|+..|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666778888999999999999999999999998 55556666779999999999999999999999763
Q ss_pred ------CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHH
Q 009045 307 ------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--------PKAAHIWANLA 372 (546)
Q Consensus 307 ------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 372 (546)
|.-..++.+|+.+|. ..|++++|..++++++++. |.-...+..++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~---------------------~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYY---------------------KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHh---------------------ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 333445666666665 9999999999999999873 33456788899
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 009045 373 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 452 (546)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 452 (546)
.++..++++++|+.++++++++.-+-+ ....+..+..+.++|
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~--------------------------------------g~~~~~~a~~~~nl~ 374 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAP--------------------------------------GEDNVNLAKIYANLA 374 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhc--------------------------------------cccchHHHHHHHHHH
Confidence 999999999999999999887643111 001122345789999
Q ss_pred HHHHhcccHHHHHHHHHhhccch----------hhhHHhhHHHHHHHhccHHHHHHHHHHHHHh-------CCCCHHHHH
Q 009045 453 AVQKTHHEVAAAFETEENELSKM----------EECAGAGESAFLDQASAVNVAKECLLAALKA-------DPKAAHIWA 515 (546)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~ 515 (546)
.+|..+|++.+|...+.+++... ...+++.+|..|.+.+++.+|...|..++.+ .|+-...+.
T Consensus 375 ~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~ 454 (508)
T KOG1840|consen 375 ELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL 454 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 99999999999999999866522 2355779999999999999999999888764 344567889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 516 NLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 516 ~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
+||.+|..+|+++.|+++.++++..
T Consensus 455 nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 455 NLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998854
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.76 E-value=1.7e-14 Score=136.45 Aligned_cols=384 Identities=13% Similarity=0.090 Sum_probs=272.2
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 183 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 183 (546)
+..+..|...|.+...+..+|.. +...|....+..++.|+.+...|+.+|.++....+|++|+++|+.|+.+.|+
T Consensus 28 K~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d 107 (700)
T KOG1156|consen 28 KLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD 107 (700)
T ss_pred HHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 55567788899999999988887 5667777888899999999999999999999999999999999999999776
Q ss_pred cchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHH
Q 009045 184 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 263 (546)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 263 (546)
+ ..++..++.+...+ ++++.....-.+.++..|..-..|...+..+...|++..|..
T Consensus 108 N------------~qilrDlslLQ~Qm-----------Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 108 N------------LQILRDLSLLQIQM-----------RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred c------------HHHHHHHHHHHHHH-----------HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 24555666655444 555888888899999999999999999999999999999999
Q ss_pred HHHhhHhcC---CCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccccccccc
Q 009045 264 VLSSLLAVD---PNN-----CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 335 (546)
Q Consensus 264 ~~~~al~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 335 (546)
..+...+.. |.. .........+..+.|.+++|.+.+..--.. ....++....
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~------i~Dkla~~e~-------------- 224 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ------IVDKLAFEET-------------- 224 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH------HHHHHHHhhh--------------
Confidence 888776654 332 345556667777888888887776553222 1222222221
Q ss_pred ccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhcCCCChhHHH-HH--------
Q 009045 336 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG-KCLEKAAKLEPNCMSTRY-AV-------- 405 (546)
Q Consensus 336 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~-~l-------- 405 (546)
.|.++.+++++++|+..|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|....... .+
T Consensus 225 -ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 225 -KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEEL 303 (700)
T ss_pred -HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchh
Confidence 2455559999999999999999999999999988888886333444444 556555554443321110 00
Q ss_pred ---HHHHHHHh---------------hhccCchhHHHHHHHHHHHHHhcCCCC--------CCCcHHHH--HHHHHHHHh
Q 009045 406 ---AVSRIKDA---------------ERSQEPTEQLSWAGNEMASILREGDPV--------QIEPPIAW--AGFAAVQKT 457 (546)
Q Consensus 406 ---~~~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--~~l~~~~~~ 457 (546)
....+... .+.......+......+...+...... .+..+.+| +.++..+..
T Consensus 304 ~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 00011100 011011111122222222233222111 13344445 578888899
Q ss_pred cccHHHHHHHHHhhccchhh--hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009045 458 HHEVAAAFETEENELSKMEE--CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 535 (546)
Q Consensus 458 ~~~~~~A~~~~~~~l~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (546)
.|+++.|......+++-.+. +.+...|.++...|++++|..++..+.++|-.+..+-..-|.-..+.++.++|.+...
T Consensus 384 ~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 99999999999999885544 6677889999999999999999999999987666555567777788888888887654
Q ss_pred H
Q 009045 536 K 536 (546)
Q Consensus 536 ~ 536 (546)
+
T Consensus 464 k 464 (700)
T KOG1156|consen 464 K 464 (700)
T ss_pred H
Confidence 4
No 72
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.4e-17 Score=146.26 Aligned_cols=264 Identities=17% Similarity=0.129 Sum_probs=199.1
Q ss_pred CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 132 SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 132 ~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
.++.|...+..+++..|+++..|...+.+++..|+|++|....++.+++.|... . .+.+.+
T Consensus 64 ~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~------------k-------~~~r~~ 124 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS------------K-------GQLREG 124 (486)
T ss_pred hHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc------------c-------cccchh
Confidence 348888899999999999999999999999999999999999999998855421 1 222333
Q ss_pred CCccccccChhhHHHHHHHHHHHH-----hc-------------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC
Q 009045 212 DNSLDKELEPEELEEILSKLKESM-----QS-------------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP 273 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al-----~~-------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 273 (546)
+. +...++..+|...++..- .. .|....+....+.|+...|++++|...--..+++++
T Consensus 125 ~c----~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~ 200 (486)
T KOG0550|consen 125 QC----HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA 200 (486)
T ss_pred hh----hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc
Confidence 33 445555677776665221 00 122234555678888889999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH
Q 009045 274 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 353 (546)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 353 (546)
.+.++++..|.+++..++.+.|+..|++++.++|++..+-...-..-. +..+...|.-..+.|++.+|.++
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~---------le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK---------LEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH---------HHHHHhhhhhHhhccchhHHHHH
Confidence 999999999999999999999999999999999987765432222111 33445577888888888888888
Q ss_pred HHHHHhcCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 009045 354 LLAALKADPK----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNE 429 (546)
Q Consensus 354 ~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 429 (546)
|..+|.++|+ ++..|.+++.+...+|+..+|+...+.++.+++...
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi------------------------------ 321 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI------------------------------ 321 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH------------------------------
Confidence 8888888887 456788888888888888888888888888887532
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc
Q 009045 430 MASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 473 (546)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 473 (546)
.++...|.++...+++++|++.|.+++.
T Consensus 322 ----------------kall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 322 ----------------KALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777778888888887777554
No 73
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=2.1e-15 Score=145.91 Aligned_cols=269 Identities=13% Similarity=0.064 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL-GIAYFQSGDMEQSAKCFQDLILKDQNHPAAL-INYAALLL 321 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~ 321 (546)
..+..|.+....|+|++|.+.+.+.-+..+ ++..++.+ +.+....|+++.|..+|.++.+..|++.... ...+.++.
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 345667777788999999988887666533 34555555 5566999999999999999999999886443 23355555
Q ss_pred HhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 009045 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
..|++++|+..+++..+.+|+++.++..++.+|...|++++|+..+.+..+..+.++..
T Consensus 165 ---------------------~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 165 ---------------------ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred ---------------------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 89999999999999999999999999999999999999999999999998877765443
Q ss_pred HHH---HHHHH-HHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhh
Q 009045 402 RYA---VAVSR-IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 477 (546)
Q Consensus 402 ~~~---l~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 477 (546)
... .+... +...... ... ..+...........++++.+...++..+...|+.++|.....+.++....
T Consensus 224 ~~~l~~~a~~~l~~~~~~~-~~~-------~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~ 295 (398)
T PRK10747 224 RAMLEQQAWIGLMDQAMAD-QGS-------EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD 295 (398)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCH-------HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 221 11111 1111111 111 12222333333334677889999999999999999999999998773322
Q ss_pred hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 478 CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
....+.......++.++++..+++.++.+|+++..+..+|.++...|++++|.++|+++++.-|+
T Consensus 296 -~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 296 -ERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred -HHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 21111123335599999999999999999999999999999999999999999999999988654
No 74
>PLN03077 Protein ECB2; Provisional
Probab=99.76 E-value=4.2e-15 Score=159.38 Aligned_cols=303 Identities=10% Similarity=0.028 Sum_probs=215.6
Q ss_pred ChhhHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
..|++++|...+..+++... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 44566777777777766533 3456777888899999999999999988654 3567889999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCc--------------cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGS--------------VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 364 (546)
|++.....+.+...+..+...+...+.- ...+......+-..|.+.|++++|...|+.. +.+
T Consensus 478 f~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d 553 (857)
T PLN03077 478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKD 553 (857)
T ss_pred HHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCC
Confidence 9998754333333333332222211000 0011222234557888999999999999886 557
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCC
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKL--EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQI 442 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (546)
...|..+...|...|+.++|+..|++..+. .|+.......+. ...... ....+...+. .+.....+.|
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~--a~~~~g-------~v~ea~~~f~-~M~~~~gi~P 623 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC--ACSRSG-------MVTQGLEYFH-SMEEKYSITP 623 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH--HHhhcC-------hHHHHHHHHH-HHHHHhCCCC
Confidence 889999999999999999999999998874 565443222221 111111 1111211222 2221222333
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009045 443 EPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 522 (546)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 522 (546)
+ ...|..+...+.+.|++++|...+++.--..+...|..+-..+...|+.+.+....+++++++|++...+..++.+|.
T Consensus 624 ~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 624 N-LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred c-hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 3 467899999999999999999999985434445667777777888899999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHH
Q 009045 523 LTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 523 ~~g~~~~A~~~~~~al~~ 540 (546)
..|++++|.+..+...+.
T Consensus 703 ~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 703 DAGKWDEVARVRKTMREN 720 (857)
T ss_pred HCCChHHHHHHHHHHHHc
Confidence 999999999998877654
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=4.6e-16 Score=149.32 Aligned_cols=255 Identities=19% Similarity=0.208 Sum_probs=186.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHH
Q 009045 146 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 225 (546)
Q Consensus 146 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 225 (546)
.+|.-..+...+|..|..+|+|++|+..++++++..-+ ..|
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k------------------~~G--------------------- 234 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEK------------------TSG--------------------- 234 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH------------------ccC---------------------
Confidence 35777778888999999999999999999999886100 000
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------CCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 226 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
...|.-......+|.+|..++++++|+..|++++.+ +|.-+.++.+||.+|...|++++|..
T Consensus 235 ----------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~ 304 (508)
T KOG1840|consen 235 ----------LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEE 304 (508)
T ss_pred ----------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHH
Confidence 012333344447999999999999999999999986 44456789999999999999999999
Q ss_pred HHHHHHhhCCC-----CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--------CCC
Q 009045 298 CFQDLILKDQN-----HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--------PKA 364 (546)
Q Consensus 298 ~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~ 364 (546)
++++++.+... .+.+-..+ .+++.++...+++++|+.++++++++. +.-
T Consensus 305 ~~e~Al~I~~~~~~~~~~~v~~~l------------------~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~ 366 (508)
T KOG1840|consen 305 YCERALEIYEKLLGASHPEVAAQL------------------SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL 366 (508)
T ss_pred HHHHHHHHHHHhhccChHHHHHHH------------------HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH
Confidence 99999976432 22211111 123444558999999999999998863 234
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP 444 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (546)
+..+.+||.+|..+|++++|.++|++++.+...... ......
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~--------------------------------------~~~~~~ 408 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG--------------------------------------KKDYGV 408 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--------------------------------------CcChhh
Confidence 678999999999999999999999999987542211 001112
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhcc------chh---hhHHhhHHHHHHHhccHHHHHHHHHHHHH
Q 009045 445 PIAWAGFAAVQKTHHEVAAAFETEENELS------KME---ECAGAGESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~------~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
...+..+|..+...+.+.+|...|....+ +.. ...+.+||.+|..+|++++|+++.++++.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 23456677777777777777776665333 222 24567999999999999999999999884
No 76
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.75 E-value=3.6e-14 Score=150.32 Aligned_cols=346 Identities=12% Similarity=0.085 Sum_probs=248.6
Q ss_pred hHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 134 SREEKGLVHVARKMP--KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
..|.+.|++....+. .+...+..+...+.+.|..++|+.+|+.... |+.. .+..+...
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----------pd~~----Tyn~LL~a----- 446 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----------PTLS----TFNMLMSV----- 446 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----------CCHH----HHHHHHHH-----
Confidence 555556666555442 2333334455556667777777776655432 1111 11111111
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC-CChHHHHHHHHHHHHc
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-NNCDCIGNLGIAYFQS 289 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 289 (546)
+...|++++|...|+++.+... .+...|..+...|.+.|++++|.+.|+++.+... -+...|..+...|.+.
T Consensus 447 ------~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 447 ------CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred ------HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 2355677999999999887643 3567888999999999999999999999987643 2678899999999999
Q ss_pred CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc----CCC
Q 009045 290 GDMEQSAKCFQDLILKD--QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPK 363 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~ 363 (546)
|++++|+..|++..... | +...|..+...+. +.|++++|.+.|.+.... .|+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~---------------------k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKP-DRVVFNALISACG---------------------QSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999987643 4 3556666666665 889999999999999763 444
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCC
Q 009045 364 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN-CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQI 442 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (546)
...|..+...|.+.|++++|.+.|+++.+.+.. +...+..+.. .+..... +..+..-+......+ ..|
T Consensus 579 -~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~-ay~k~G~-------~deAl~lf~eM~~~G--v~P 647 (1060)
T PLN03218 579 -HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN-SCSQKGD-------WDFALSIYDDMKKKG--VKP 647 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH-HHHhcCC-------HHHHHHHHHHHHHcC--CCC
Confidence 678888999999999999999999999987633 3333333322 2222221 222222222333222 223
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHhhcc---chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Q 009045 443 EPPIAWAGFAAVQKTHHEVAAAFETEENELS---KMEECAGAGESAFLDQASAVNVAKECLLAALKA--DPKAAHIWANL 517 (546)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 517 (546)
+...|..+...+...|++++|+..+..... ..+...+..+...|.+.|++++|+..|++..+. .| +...|..+
T Consensus 648 -D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~L 725 (1060)
T PLN03218 648 -DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNAL 725 (1060)
T ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Confidence 356789999999999999999999998665 334567888999999999999999999998764 44 56789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHH
Q 009045 518 ANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 518 g~~~~~~g~~~~A~~~~~~al~~ 540 (546)
...|.+.|++++|.+.|++..+.
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999987654
No 77
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=4.3e-15 Score=128.85 Aligned_cols=250 Identities=18% Similarity=0.192 Sum_probs=113.2
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-----hHHHHHHHHHHHHcCCHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-----CDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A 295 (546)
.++.++|+..|..+++.+|...++.+.||.+|.+.|..+.|+..-+..++ .|+. .-+...||.-|+..|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34444444444444444444444444444444444444444444433332 2221 22344444444444444444
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC-----HHHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-----AHIWAN 370 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~ 370 (546)
...|........--..+...+..+|. ...+|++|++..++..++.++. +..+..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ---------------------~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQ---------------------ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHH---------------------HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 44444444333333333333333333 4444444444444444444431 223444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHH
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAG 450 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (546)
++..+....+.+.|+..+.++++.+|++. .+-..
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cv----------------------------------------------RAsi~ 219 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCV----------------------------------------------RASII 219 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccce----------------------------------------------ehhhh
Confidence 44444444444444444444444444432 23334
Q ss_pred HHHHHHhcccHHHHHHHHHhhccchhh---hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 009045 451 FAAVQKTHHEVAAAFETEENELSKMEE---CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 527 (546)
Q Consensus 451 l~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 527 (546)
+|.+....|++++|++.+...+..++. .+.-.|..+|.+.|+.++.+.++.++.+..++ +++...++..-....-.
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~ 298 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGI 298 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhCh
Confidence 555555555555555555554443332 23334445555555555555555555555443 23333444444444444
Q ss_pred HHHHHHHHHHHH
Q 009045 528 RSSGKCLEKVLM 539 (546)
Q Consensus 528 ~~A~~~~~~al~ 539 (546)
+.|..++.+-+.
T Consensus 299 ~~Aq~~l~~Ql~ 310 (389)
T COG2956 299 DAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 78
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.71 E-value=4.8e-16 Score=126.81 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 228 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 228 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
...|+++++.+|++ ++.+|.++...|++++|+..|++++.++|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788888888875 556888888899999999999999999998889999999999999999999999999998889
Q ss_pred CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009045 308 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 378 (546)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 378 (546)
+++.+++++|.++. ..|++++|+..|++++++.|+++..+..+|.+....
T Consensus 90 ~~~~a~~~lg~~l~---------------------~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLK---------------------MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 88888888888887 788888899999888888888888888888776543
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.70 E-value=8.2e-14 Score=134.51 Aligned_cols=369 Identities=14% Similarity=0.057 Sum_probs=263.1
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
..+.+.|++++..--...+.|+.++.+|...|.-..|+...+..+...|... .+.. +.. ....+
T Consensus 340 ~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps----~~s~--~Lm---asklc------- 403 (799)
T KOG4162|consen 340 EVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS----DISV--LLM---ASKLC------- 403 (799)
T ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC----cchH--HHH---HHHHH-------
Confidence 4455566666666666677777777777777777777777777766542110 1111 001 11111
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHc-----------CChHHHHHHHHhhHhcCCCChH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDT-----RQAVVWNTLGLILLKS-----------GRLQSSISVLSSLLAVDPNNCD 277 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~ 277 (546)
.-+.+..++++.+..+++.... -.+.++..+|.+|..+ ....++++.++++++.+|+|+.
T Consensus 404 ----~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 404 ----IERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred ----HhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 1245666999999999987321 1255778888887543 2467899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 278 CIGNLGIAYFQSGDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
+.+.++.-|..+++.+.|....++++++ ..++..+|..++.++. ..+++.+|+.....
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS---------------------a~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS---------------------AQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh---------------------hhhhhHHHHHHHHH
Confidence 9999999999999999999999999999 5667888999998887 88999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhh--------hccCchh---HHHH
Q 009045 357 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE--------RSQEPTE---QLSW 425 (546)
Q Consensus 357 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~--------~~~~~~~---~~~~ 425 (546)
++.-.|+|.........+-...++.++|+..+...+.+-.....+...++.....+.. ...++.. .+..
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 9999999888777777788889999999999988887655333333222221111000 0001111 1111
Q ss_pred HHHHHHHHHh-----cCCCCCCC-------cHHHHHHHHHHHHhcccHHHHHHHHHh--hccchhhhHHhhHHHHHHHhc
Q 009045 426 AGNEMASILR-----EGDPVQIE-------PPIAWAGFAAVQKTHHEVAAAFETEEN--ELSKMEECAGAGESAFLDQAS 491 (546)
Q Consensus 426 ~~~~~~~~~~-----~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~--~l~~~~~~~~~~la~~~~~~g 491 (546)
....-.+.+. ......+. ....|...+..+...+..+++...+.+ .+.+.....|+..|.++...|
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence 1110001111 00001111 234688889999999999999877776 445666788899999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH--HHHHHHHHhcc
Q 009045 492 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK--CLEKVLMVYCS 543 (546)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~~~ 543 (546)
++.+|...|..++.++|+++.....+|.++...|+..-|.. .+..++++-+.
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999988888 88888887543
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=4.4e-15 Score=133.90 Aligned_cols=194 Identities=16% Similarity=0.102 Sum_probs=134.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHH
Q 009045 146 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 225 (546)
Q Consensus 146 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 225 (546)
.++..+..++.+|..+...|++++|+..|++++...|.+
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~----------------------------------------- 66 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS----------------------------------------- 66 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----------------------------------------
Confidence 345678889999999999999999999998888875532
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChH---HHHHHHHHHHHc--------CCHHH
Q 009045 226 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD---CIGNLGIAYFQS--------GDMEQ 294 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~--------g~~~~ 294 (546)
|....+++.+|.++...|++++|+..|+++++..|+++. +++.+|.++... |++++
T Consensus 67 -------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 133 (235)
T TIGR03302 67 -------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAARE 133 (235)
T ss_pred -------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHH
Confidence 111245566666666666666666666666666665554 466666666654 56677
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWANL 371 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 371 (546)
|++.|++++..+|++...+..+..+..... ........+|.++...|++.+|+..|+++++..|+ .+.++..+
T Consensus 134 A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l 209 (235)
T TIGR03302 134 AFEAFQELIRRYPNSEYAPDAKKRMDYLRN----RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARL 209 (235)
T ss_pred HHHHHHHHHHHCCCChhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHH
Confidence 777777777777766544322221111000 00011124566777999999999999999999776 46899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
|.++..+|++++|+.+++......|+
T Consensus 210 ~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 210 VEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999888776653
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=8.1e-15 Score=132.19 Aligned_cols=196 Identities=16% Similarity=0.099 Sum_probs=127.5
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---H
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---A 312 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 312 (546)
+..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34455666666666666666666666666666666543 35566666666666666666666666666665554 2
Q ss_pred HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
++.+|.++. .. ++.++...|++++|+..|++++
T Consensus 110 ~~~~g~~~~---------------------~~--------------------------~~~~~~~~~~~~~A~~~~~~~~ 142 (235)
T TIGR03302 110 YYLRGLSNY---------------------NQ--------------------------IDRVDRDQTAAREAFEAFQELI 142 (235)
T ss_pred HHHHHHHHH---------------------Hh--------------------------cccccCCHHHHHHHHHHHHHHH
Confidence 333333332 11 1112333478899999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc
Q 009045 393 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 472 (546)
Q Consensus 393 ~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 472 (546)
..+|++...+..+... +.....
T Consensus 143 ~~~p~~~~~~~a~~~~-------------------------------------------~~~~~~--------------- 164 (235)
T TIGR03302 143 RRYPNSEYAPDAKKRM-------------------------------------------DYLRNR--------------- 164 (235)
T ss_pred HHCCCChhHHHHHHHH-------------------------------------------HHHHHH---------------
Confidence 9999876544222110 000000
Q ss_pred cchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 473 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 473 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
.....+.+|..+...|++.+|+..|++++...|+. +.+++.+|.++..+|++++|..+++.....++
T Consensus 165 ---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 ---LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 01122356678999999999999999999997764 68999999999999999999999988776654
No 82
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.68 E-value=8.2e-14 Score=145.85 Aligned_cols=212 Identities=11% Similarity=0.038 Sum_probs=139.8
Q ss_pred hHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 134 SREEKGLVHVARKMP--KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
..|.+.|.......+ -+..++..+..++.+.++++.|...+....+... .|+. ..+..+...
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~-------~~~~----~~~n~Li~~----- 167 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF-------EPDQ----YMMNRVLLM----- 167 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-------Ccch----HHHHHHHHH-----
Confidence 667777777765432 4678888999999999999999999998887532 2221 122233333
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC--C---------------
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--N--------------- 274 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~--------------- 274 (546)
|.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|+..|++.++... +
T Consensus 168 ------y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 168 ------HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred ------HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 3456777999999999864 3 567899999999999999999999999876532 1
Q ss_pred -------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccccccccc
Q 009045 275 -------------------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 335 (546)
Q Consensus 275 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 335 (546)
+..++..+...|.+.|++++|.+.|++.. +.+..+|..+...|.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~-------------- 301 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYA-------------- 301 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHH--------------
Confidence 22334556677777778888877777643 345556666666555
Q ss_pred ccchHHHhhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 336 GEGACLDQASAVNVAKECLLAALKAD-PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 336 ~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
+.|++++|++.|++..+.. .-+...+..+..++...|++++|...+..+++.
T Consensus 302 -------~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 302 -------LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred -------hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 5555566666555554421 112444555555555555555555555555544
No 83
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.7e-12 Score=118.54 Aligned_cols=409 Identities=13% Similarity=0.052 Sum_probs=267.2
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 183 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 183 (546)
+.|++||+.+..+...|...... +.+.|...+.+++..-|.-...|+....+-..+|+...|.+.|++-++..|+
T Consensus 94 Sv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~ 173 (677)
T KOG1915|consen 94 SVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD 173 (677)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc
Confidence 67888998887776666654443 5678888999999999999999999999999999999999999999999776
Q ss_pred cchhccchhhH-------HHHHHHhhccccccccCCC--ccccccChhhHHHHHHHHHHHHhcCcccH---HHHHHHHHH
Q 009045 184 CEADIARPELL-------SLVQIHHAQCLLPESSGDN--SLDKELEPEELEEILSKLKESMQSDTRQA---VVWNTLGLI 251 (546)
Q Consensus 184 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~ 251 (546)
...+...-++- ..-.++.....++-..... ...--.+.|+...|...|.+|++.-.++. ..+...|..
T Consensus 174 eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~f 253 (677)
T KOG1915|consen 174 EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEF 253 (677)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 53221100000 0000000000000000000 00001244555666666666665443321 223333333
Q ss_pred HHHcCChHHHHHHHHhhHh--------------------------------------------cCCCChHHHHHHHHHHH
Q 009045 252 LLKSGRLQSSISVLSSLLA--------------------------------------------VDPNNCDCIGNLGIAYF 287 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~--------------------------------------------~~p~~~~~~~~la~~~~ 287 (546)
-..+..++.|.-.|+-+|. .+|.|.++|+..-.+-.
T Consensus 254 Ee~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e 333 (677)
T KOG1915|consen 254 EERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEE 333 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3344444444444444433 35666667777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchH-HHhhcCHHHHHHHHHHHHhcCCC---
Q 009045 288 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC-LDQASAVNVAKECLLAALKADPK--- 363 (546)
Q Consensus 288 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~--- 363 (546)
..|+.+.-.+.|++|+..-|....-.+-.-.+|+ +.+.+.+ .....+.+.+.+.|+.++++-|.
T Consensus 334 ~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL------------WinYalyeEle~ed~ertr~vyq~~l~lIPHkkF 401 (677)
T KOG1915|consen 334 SVGDKDRIRETYERAIANVPPASEKRYWRRYIYL------------WINYALYEELEAEDVERTRQVYQACLDLIPHKKF 401 (677)
T ss_pred hcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH------------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc
Confidence 7777777777777777665543322111111111 0001111 12578899999999999999997
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH-HHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCC
Q 009045 364 -AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV-SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ 441 (546)
Q Consensus 364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (546)
.+.+|...|....++.+...|.+.+-.++...|.+....-.+-+ ..+. -+..+.++...-....
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~--------------efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLR--------------EFDRCRKLYEKFLEFS 467 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHh--------------hHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999999987543322211 1111 1223444444444556
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc----hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009045 442 IEPPIAWAGFAAVQKTHHEVAAAFETEENELSK----MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANL 517 (546)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 517 (546)
|.+..+|...|.+-..+|+.+.|...|.-+++. .+...|-..-..-...|.+++|...|++.|+..+... +|...
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisF 546 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISF 546 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhH
Confidence 788899999999999999999999999988773 3444455555556688999999999999999987654 88777
Q ss_pred HHHHH-----hcC-----------ChHHHHHHHHHHHHHhccc
Q 009045 518 ANAYY-----LTG-----------DHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 518 g~~~~-----~~g-----------~~~~A~~~~~~al~~~~~~ 544 (546)
|..-. ..| +...|...|++|...+..+
T Consensus 547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred HHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 77654 455 6778999999999887654
No 84
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.67 E-value=2.5e-15 Score=122.57 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=116.4
Q ss_pred HHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchH
Q 009045 261 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 340 (546)
Q Consensus 261 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 340 (546)
-...|+++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~------------------- 69 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM------------------- 69 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-------------------
Confidence 356899999999885 6678999999999999999999999999999999999999988
Q ss_pred HHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009045 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 408 (546)
Q Consensus 341 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 408 (546)
..|++++|+..|++++.++|+++.+++++|.++..+|++++|+..|++++++.|+++..+...+..
T Consensus 70 --~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 70 --MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred --HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999888777654
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.64 E-value=2.8e-14 Score=122.91 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=117.8
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHH-HHcCC--HHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY-FQSGD--MEQSA 296 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~ 296 (546)
..++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++.++|+++.++..+|.++ ...|+ +++|.
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3466799999999999999999999999999999999999999999999999999999999999975 77787 59999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
+.++++++.+|++..++..+|..+. ..|++++|+.+++++++..|.+..-
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~---------------------~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAF---------------------MQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999988 8999999999999999998875443
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.64 E-value=3.3e-13 Score=130.20 Aligned_cols=291 Identities=11% Similarity=-0.018 Sum_probs=193.6
Q ss_pred hHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccccc
Q 009045 134 SREEKGLVHVARKMPKN---AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 210 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (546)
..+.+.+.++.+..|.+ .+..+..|.++...|++++|+..++++++.+|++. ..+.. +..+..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~------------~a~~~-~~~~~~~ 89 (355)
T cd05804 23 PAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL------------LALKL-HLGAFGL 89 (355)
T ss_pred chHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH------------HHHHH-hHHHHHh
Confidence 44466677777666644 66788889999999999999999999999977642 11111 2222222
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC
Q 009045 211 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 290 (546)
Q Consensus 211 g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 290 (546)
|.. .+....+...+......+|.....+..+|.++..+|++++|+..+++++++.|++..++..+|.++...|
T Consensus 90 ~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 90 GDF-------SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred ccc-------ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 221 2334556666655556778888888899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC--C
Q 009045 291 DMEQSAKCFQDLILKDQNHPA----ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--A 364 (546)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~ 364 (546)
++++|+.++++++...|.... .+..++.++. ..|++++|+..|++++...|. .
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~---------------------~~G~~~~A~~~~~~~~~~~~~~~~ 221 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL---------------------ERGDYEAALAIYDTHIAPSAESDP 221 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHhccccCCCh
Confidence 999999999999998875432 2334555555 999999999999999876662 2
Q ss_pred HHHHH---HHHHHHHHcCChHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 009045 365 AHIWA---NLANAYYLTGDHRSSGKCLEKAAKLE-PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV 440 (546)
Q Consensus 365 ~~~~~---~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (546)
..... .+...+...|....+... +.+.... +....
T Consensus 222 ~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~---------------------------------------- 260 (355)
T cd05804 222 ALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD---------------------------------------- 260 (355)
T ss_pred HHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc----------------------------------------
Confidence 21111 122222333332222221 1111110 00000
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc---c--------hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC
Q 009045 441 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---K--------MEECAGAGESAFLDQASAVNVAKECLLAALKAD 507 (546)
Q Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 507 (546)
..........+.++...|+.++|...+..... . .........+.++...|++++|+..+..++.+.
T Consensus 261 -~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 261 -HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred -ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00011123455566666777776666655222 1 112334567778899999999999999998764
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.1e-13 Score=121.54 Aligned_cols=316 Identities=12% Similarity=0.044 Sum_probs=209.4
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
.+...+|..|+..++-.+..+.... .....+|.|++.+|+|++|+..|.-+...+.-+.+.+.+|+.+++-+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4567788999999998887665443 566778999999999999999999999887778899999999999999999998
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHh------hCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCK------YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
..-.++-+ .|-....++.++.-+-.. ........+..+.++.+....-.|++|++.|.+.+..+|+.......
T Consensus 112 ~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy 190 (557)
T KOG3785|consen 112 SIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVY 190 (557)
T ss_pred HHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHH
Confidence 87766532 121122222222211100 00011123445567777778888999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHH-------HHHH------------
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG-------NEMA------------ 431 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~-------~~~~------------ 431 (546)
++.||+++.-|+-+.+.+.--++..|+++.+....+...+.-.. ...+........ ....
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~n-gr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLIN-GRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN 269 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhc-cchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence 99999999999999999999999999998777655543332110 000000000000 0000
Q ss_pred --HHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhh---------------------------
Q 009045 432 --SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAG--------------------------- 482 (546)
Q Consensus 432 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~--------------------------- 482 (546)
..++-..+.....|++..++...|..+++..+|+..... ++|..+.-+..
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffql 348 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD-LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQL 348 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Confidence 111111112224566777788888888888888776543 22222222222
Q ss_pred ----------------HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009045 483 ----------------ESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 536 (546)
Q Consensus 483 ----------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (546)
+|.+++-..++++-+.++...-...-++....++++.++...|++.+|.+.|-+
T Consensus 349 VG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 349 VGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred hcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhh
Confidence 333333334466666666666666666667777888888888888888777644
No 88
>PLN03077 Protein ECB2; Provisional
Probab=99.63 E-value=3.4e-13 Score=144.73 Aligned_cols=381 Identities=11% Similarity=0.040 Sum_probs=232.3
Q ss_pred HHhhccchhhhhhHHHHHhHhcCCCC----cccccccCCCCchHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChhHH
Q 009045 96 KINKLGKCRSRISSKMDSALEFGVDA----DGDQSGLGTSSSSREEKGLVHVARKM-PKNAHAHFLLGLMYQRLGQPLKA 170 (546)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~al~~~~~~----~~~~~~~g~~~~~~a~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 170 (546)
.+.+.|+...+. ..|++....+... ...+...|.. .+|.+.|.+..... ..+...+..+-..+...|+.+.|
T Consensus 231 ~y~k~g~~~~A~-~lf~~m~~~d~~s~n~li~~~~~~g~~--~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 231 MYVKCGDVVSAR-LVFDRMPRRDCISWNAMISGYFENGEC--LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHhcCCCHHHHH-HHHhcCCCCCcchhHHHHHHHHhCCCH--HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 355666666654 5555544333322 2233445555 88888888887653 23556677777788888999999
Q ss_pred HHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 009045 171 VSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGL 250 (546)
Q Consensus 171 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 250 (546)
.+.+..+++..- .|+. ..+..+...| .+.|++++|...|+++.. .+...|..+..
T Consensus 308 ~~l~~~~~~~g~-------~~d~----~~~n~Li~~y-----------~k~g~~~~A~~vf~~m~~---~d~~s~n~li~ 362 (857)
T PLN03077 308 REMHGYVVKTGF-------AVDV----SVCNSLIQMY-----------LSLGSWGEAEKVFSRMET---KDAVSWTAMIS 362 (857)
T ss_pred HHHHHHHHHhCC-------ccch----HHHHHHHHHH-----------HhcCCHHHHHHHHhhCCC---CCeeeHHHHHH
Confidence 998888877532 1221 2233333333 345666889888888653 34567888888
Q ss_pred HHHHcCChHHHHHHHHhhHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhCcc
Q 009045 251 ILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSV 327 (546)
Q Consensus 251 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~ 327 (546)
.|.+.|++++|++.|++.... .|+. ..+..+-..+...|++++|.+.+..+.+.... +...+..+...|.
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~------ 435 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS------ 435 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH------
Confidence 888999999999998877554 4554 34555555778888888888888888876432 3444555555555
Q ss_pred ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCChhHHHHHH
Q 009045 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL-EPNCMSTRYAVA 406 (546)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~ 406 (546)
+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|++.+.. .|+.......+.
T Consensus 436 ---------------k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~ 497 (857)
T PLN03077 436 ---------------KCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS 497 (857)
T ss_pred ---------------HcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence 77788888888776543 34567777777788888888888888777643 233221111111
Q ss_pred -HHHHHHhh----------hc---------------cCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhccc
Q 009045 407 -VSRIKDAE----------RS---------------QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE 460 (546)
Q Consensus 407 -~~~l~~~~----------~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (546)
........ +. ......+..+ ...+... ..+...|..+...|...|+
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A----~~~f~~~----~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA----WNQFNSH----EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH----HHHHHhc----CCChhhHHHHHHHHHHcCC
Confidence 00000000 00 0000011111 1122221 2345677778888888888
Q ss_pred HHHHHHHHHhhcc---chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009045 461 VAAAFETEENELS---KMEECAGAGESAFLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYYLTGDHRSSGKCLE 535 (546)
Q Consensus 461 ~~~A~~~~~~~l~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (546)
.++|+..|.+... ..+...+..+-..+.+.|++++|..+|+...+..+ -+...|..+..++.+.|++++|.+.++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8888888776443 12223344555567777778888888877764322 134567777777777788777777776
Q ss_pred HH
Q 009045 536 KV 537 (546)
Q Consensus 536 ~a 537 (546)
+.
T Consensus 650 ~m 651 (857)
T PLN03077 650 KM 651 (857)
T ss_pred HC
Confidence 53
No 89
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.63 E-value=2.5e-14 Score=123.21 Aligned_cols=127 Identities=16% Similarity=0.217 Sum_probs=118.6
Q ss_pred cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccc
Q 009045 255 SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGAN 334 (546)
Q Consensus 255 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 334 (546)
.++.++++..+++++..+|++...|..+|.+|...|++++|+..|+++++++|++...+..+|.++..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~------------ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYY------------ 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------
Confidence 67889999999999999999999999999999999999999999999999999999999999987531
Q ss_pred cccchHHHhhcC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 009045 335 TGEGACLDQASA--VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 335 ~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
..|+ +++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++..|.+..-
T Consensus 120 --------~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 120 --------QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred --------hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 5566 5999999999999999999999999999999999999999999999999886543
No 90
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.61 E-value=5e-14 Score=126.12 Aligned_cols=284 Identities=14% Similarity=0.090 Sum_probs=180.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHH
Q 009045 156 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 235 (546)
Q Consensus 156 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al 235 (546)
.-|.-+++.|++...+.+|+.|++... .++..+..+| ..+|+. |+-.++|++|+++-..-+
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGT--------eDl~tLSAIY-------sQLGNA----yfyL~DY~kAl~yH~hDl 82 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGT--------EDLSTLSAIY-------SQLGNA----YFYLKDYEKALKYHTHDL 82 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcc--------hHHHHHHHHH-------HHhcch----hhhHhhHHHHHhhhhhhH
Confidence 347778999999999999999999853 3344344444 444544 566777799998765433
Q ss_pred hc------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC------CChHHHHHHHHHHHHcCCH-----------
Q 009045 236 QS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDM----------- 292 (546)
Q Consensus 236 ~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~----------- 292 (546)
.+ .-..+.+.-+||.++-..|.|++|+.+..+-+.+.. ....+++++|.+|...|+.
T Consensus 83 tlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~ 162 (639)
T KOG1130|consen 83 TLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGA 162 (639)
T ss_pred HHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhccc
Confidence 22 223355667899999999999999999988776532 2367899999999887652
Q ss_pred --HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC------C
Q 009045 293 --EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------A 364 (546)
Q Consensus 293 --~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~ 364 (546)
+++...++.+.+..-.+......++. ..+....+-++|..|+-+|+|+.|+..-+.-+.+... .
T Consensus 163 f~~ev~~al~~Av~fy~eNL~l~~~lgD--------r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae 234 (639)
T KOG1130|consen 163 FNAEVTSALENAVKFYMENLELSEKLGD--------RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE 234 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444555554433222222222222 2223344456788888899999999888877776443 3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP 444 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (546)
-.++.++|.++.-+|+++.|+++|+..+.+.-. ++. . ...
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie-------lg~----r-----------------------------~vE 274 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE-------LGN----R-----------------------------TVE 274 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHH-------hcc----h-----------------------------hHH
Confidence 457888999999999999999999887654211 000 0 001
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhcc--------chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHh
Q 009045 445 PIAWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAGESAFLDQASAVNVAKECLLAALKA 506 (546)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 506 (546)
+...+.+|..|.-..++++||.++.+-+. .....+.|.+|..+-..|..++|+.+.++.+++
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 23455566666666666666666655222 112244555555555555555555555555543
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.60 E-value=2e-13 Score=138.17 Aligned_cols=157 Identities=9% Similarity=0.051 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.+++.-........|+++.++.+||.+..+.|++++|...++.++++.|++..++..++.++.+++++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 44444455556678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 384 (546)
.+|++..+++.+|.++. +.|++++|+.+|++++..+|++..++..+|.++...|+.++|
T Consensus 149 ~~p~~~~~~~~~a~~l~---------------------~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 149 GGSSSAREILLEAKSWD---------------------EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred cCCCCHHHHHHHHHHHH---------------------HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHH
Q 009045 385 GKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 385 ~~~~~~al~~~p~~~~~~ 402 (546)
...|+++++...+-...+
T Consensus 208 ~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 208 RDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHHhhCcchHHH
Confidence 999999999877655443
No 92
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.60 E-value=4.4e-13 Score=136.49 Aligned_cols=260 Identities=12% Similarity=0.008 Sum_probs=191.4
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhH
Q 009045 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL 224 (546)
Q Consensus 145 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 224 (546)
..+|.+..++..|...+...|++++|+..++.+++..|+. ...++..|.++... +++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~------------i~~yy~~G~l~~q~-----------~~~ 81 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS------------ISALYISGILSLSR-----------RPL 81 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc------------eehHHHHHHHHHhh-----------cch
Confidence 4578999999999999999999999999999999986653 23333344333222 221
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.++ +...++.+.....++ .+++++-..+...+.+..+++.+|.+|-++|++++|...|+++++
T Consensus 82 ~~~----------------~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~ 144 (906)
T PRK14720 82 NDS----------------NLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK 144 (906)
T ss_pred hhh----------------hhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 221 222555555566666 667777766666788888999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 384 (546)
.+|+++.++.++|..+. .. ++++|+.++.+++.. +...+++.++
T Consensus 145 ~D~~n~~aLNn~AY~~a---------------------e~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~ 188 (906)
T PRK14720 145 ADRDNPEIVKKLATSYE---------------------EE-DKEKAITYLKKAIYR--------------FIKKKQYVGI 188 (906)
T ss_pred cCcccHHHHHHHHHHHH---------------------Hh-hHHHHHHHHHHHHHH--------------HHhhhcchHH
Confidence 99999999999999887 55 899999999999876 6777899999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHH
Q 009045 385 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 464 (546)
Q Consensus 385 ~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 464 (546)
..++.+.+..+|++......+-........ ..
T Consensus 189 ~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~----------------------------------------------~~-- 220 (906)
T PRK14720 189 EEIWSKLVHYNSDDFDFFLRIERKVLGHRE----------------------------------------------FT-- 220 (906)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhhhc----------------------------------------------cc--
Confidence 999999999999987665443221110000 00
Q ss_pred HHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 465 FETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 465 ~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.-...+.-+=.+|...++|++++.+++.+++.+|.|..+...++.||. +.|.. ...|+..+++.
T Consensus 221 ----------~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s 284 (906)
T PRK14720 221 ----------RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS 284 (906)
T ss_pred ----------hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh
Confidence 000111122227888889999999999999999999999999999987 44444 45555555543
No 93
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.3e-12 Score=109.87 Aligned_cols=169 Identities=19% Similarity=0.201 Sum_probs=157.8
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+..|+.+-|..++++.....|++.......|..+...|++++|+++|+..++-+|.+..++...-.+...+|+.-+|++.
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 45677799999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 378 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 378 (546)
+...++..+.+.++|..++.+|. ..|+|++|.-++++.+-+.|.++..+..+|.+++-+
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~---------------------~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYL---------------------SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH---------------------hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999998 889999999999999999999999999999999987
Q ss_pred CC---hHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009045 379 GD---HRSSGKCLEKAAKLEPNCMSTRYAVAVS 408 (546)
Q Consensus 379 g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~ 408 (546)
|- +.-|.++|.++++++|.+..+++.+..+
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 74 6779999999999999888888877553
No 94
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=3.5e-12 Score=107.37 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 224 LEEILSKLKESMQ------SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 224 ~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.++-++.....+. ..++...++-....+....|+.+-|..++++.....|+...+....|..+...|++++|++
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e 107 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIE 107 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHH
Confidence 3555555555443 3444455666677788889999999999999998899999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
+|+..+.-+|.+...+.....+.. .+|+.-+||+.+...++..+.+.++|..++.+|..
T Consensus 108 ~y~~lL~ddpt~~v~~KRKlAilk---------------------a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 108 YYESLLEDDPTDTVIRKRKLAILK---------------------AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS 166 (289)
T ss_pred HHHHHhccCcchhHHHHHHHHHHH---------------------HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 999999999999888776555554 77888899999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
.|+|++|.-+|++++-+.|.++..+..+
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n~l~f~rl 194 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFNPLYFQRL 194 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 9999999999999999999887554443
No 95
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5.3e-11 Score=112.05 Aligned_cols=215 Identities=16% Similarity=0.141 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|.+...+++...|++..+++..-.+....++|++|+...+.-...... ....+..+++.
T Consensus 29 e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-------------~~~~fEKAYc~------ 89 (652)
T KOG2376|consen 29 EEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-------------NSFFFEKAYCE------ 89 (652)
T ss_pred HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-------------chhhHHHHHHH------
Confidence 55566666677777777777777777777777777776443332211000 00001222222
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
++.+..++|+..++ -.++.+..+....|.+++++|+|++|+..|+..++.+.++.+........-... -.
T Consensus 90 -----Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l 159 (652)
T KOG2376|consen 90 -----YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--AL 159 (652)
T ss_pred -----HHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hh
Confidence 23333466666665 233444445555666666666666666666666555444433322221111100 00
Q ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC--------C-
Q 009045 294 QSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--------K- 363 (546)
Q Consensus 294 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~- 363 (546)
.+ . ..+.....|. ..+.+++.+.++. ..|+|.+|++.+++++++.. .
T Consensus 160 ~~-~-~~q~v~~v~e~syel~yN~Ac~~i---------------------~~gky~qA~elL~kA~~~~~e~l~~~d~~e 216 (652)
T KOG2376|consen 160 QV-Q-LLQSVPEVPEDSYELLYNTACILI---------------------ENGKYNQAIELLEKALRICREKLEDEDTNE 216 (652)
T ss_pred hH-H-HHHhccCCCcchHHHHHHHHHHHH---------------------hcccHHHHHHHHHHHHHHHHHhhcccccch
Confidence 00 0 1222222222 3344555555554 89999999999999955421 1
Q ss_pred ------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 364 ------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 364 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
-..+...++.++..+|+.++|...|...++.+|.+..
T Consensus 217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 1346788999999999999999999999999887753
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.55 E-value=5.8e-11 Score=116.09 Aligned_cols=419 Identities=14% Similarity=0.055 Sum_probs=245.0
Q ss_pred hhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---
Q 009045 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLG--- 165 (546)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g--- 165 (546)
..++...|++..++ ..+.+....-.+.......+|.+ +...|+..|..++..+|+|...+..+..+.....
T Consensus 11 ~~il~e~g~~~~AL-~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEAL-EHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHH-HHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34455566666665 55555555555444443444333 4488889999999999999999999988884443
Q ss_pred --ChhHHHHHHHHHHHHhcccchhccc-------hhhHHHHHHHhhccccccccCCCcc-----ccccChhhHHHHHHHH
Q 009045 166 --QPLKAVSSYEKAEEILLRCEADIAR-------PELLSLVQIHHAQCLLPESSGDNSL-----DKELEPEELEEILSKL 231 (546)
Q Consensus 166 --~~~~A~~~~~~al~~~p~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~~A~~~~ 231 (546)
..+.-..+|++..+..|........ ..+...+..+.... ...|-.++ ..|-...+..-...++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~---l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQ---LRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHH---HhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 4566678888887777765322111 11211111111110 01111100 0011222222222222
Q ss_pred HHH---Hhc------------Cccc--HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHH
Q 009045 232 KES---MQS------------DTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 294 (546)
Q Consensus 232 ~~a---l~~------------~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 294 (546)
... ++. .|.. ..+++.++..|...|++++|+++++++|...|..++.+...|.++.+.|++.+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 222 211 1111 24668899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC---------CH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---------AA 365 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------~~ 365 (546)
|.++++.+..+++.+.......+..++ +.|++++|.+.+..-.+.+.+ ..
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~L---------------------Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLL---------------------RAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHH---------------------HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 999999999999988877666666666 899999999999887665421 12
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh----hHHH-H------HHHHHHHHhhhccCchhHHHHHHHHHHH--
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM----STRY-A------VAVSRIKDAERSQEPTEQLSWAGNEMAS-- 432 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~-~------l~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 432 (546)
......|.+|.+.|++..|+..|..+.+...+.. +.+. . .+...+............+..+...+..
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iY 385 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIY 385 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 2334569999999999999999999887643221 1111 1 1122222222222222222222222211
Q ss_pred --HHhcCCCCCCCc---------HHHHHHHHH-H--HHhcccHHHHHHHHHhh----------ccch--hhhHHhhHHHH
Q 009045 433 --ILREGDPVQIEP---------PIAWAGFAA-V--QKTHHEVAAAFETEENE----------LSKM--EECAGAGESAF 486 (546)
Q Consensus 433 --~~~~~~~~~~~~---------~~~~~~l~~-~--~~~~~~~~~A~~~~~~~----------l~~~--~~~~~~~la~~ 486 (546)
............ +.-...... . -....+-+++...-.+. .... ...----.|.-
T Consensus 386 l~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~Gek 465 (517)
T PF12569_consen 386 LELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEK 465 (517)
T ss_pred HHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHH
Confidence 111111100000 000000000 0 00000111111100000 0000 00000123444
Q ss_pred HHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009045 487 LDQASA-VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 537 (546)
Q Consensus 487 ~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (546)
+.+..+ .++|.++++-.++..|++.++|..--.+|.+.|++-.|++++.+|
T Consensus 466 L~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~kA 517 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKKA 517 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHhC
Confidence 444443 688999999999999999999999999999999999999998775
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.55 E-value=1.3e-12 Score=111.08 Aligned_cols=147 Identities=20% Similarity=0.276 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
+.+..+..++...+|.+...+..+|...++.|+|..|+..++++..+.|++..+|..+|.+|.+.|++++|...|.++++
T Consensus 83 ~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~ 162 (257)
T COG5010 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE 162 (257)
T ss_pred cchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH
Confidence 33444444444456667777777899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 384 (546)
+.|+.+....+++..+. -.|+++.|..++..+....+.+..+..+++.+...+|++.+|
T Consensus 163 L~~~~p~~~nNlgms~~---------------------L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 163 LAPNEPSIANNLGMSLL---------------------LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred hccCCchhhhhHHHHHH---------------------HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 99999999999988887 788999999999999888888899999999999999999998
Q ss_pred HHHHHHHH
Q 009045 385 GKCLEKAA 392 (546)
Q Consensus 385 ~~~~~~al 392 (546)
.....+-+
T Consensus 222 ~~i~~~e~ 229 (257)
T COG5010 222 EDIAVQEL 229 (257)
T ss_pred Hhhccccc
Confidence 87765433
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.54 E-value=2e-12 Score=110.01 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=147.7
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (546)
.+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|...+..|++..|+..+++
T Consensus 47 ~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 47 RQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34456777777778889999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 009045 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 381 (546)
Q Consensus 302 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 381 (546)
+..+.|+++.+|..+|.+|. +.|++++|...|.+++++.|..+.+..++|..|.-.|++
T Consensus 126 A~~l~p~d~~~~~~lgaald---------------------q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 126 AARLAPTDWEAWNLLGAALD---------------------QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HhccCCCChhhhhHHHHHHH---------------------HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 99999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHH
Q 009045 382 RSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 382 ~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
+.|..++..+...-+.+..+..++
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NL 208 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNL 208 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHH
Confidence 999999999988777665443333
No 99
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=6.8e-12 Score=110.50 Aligned_cols=280 Identities=11% Similarity=0.019 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 323 (546)
-...++.+++..-.|++|++.|++++.-+|+....-..++.+|+++.-++-+.+.+.--++..|+.+.+....+..+++.
T Consensus 153 dqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 153 DQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 44567788888889999999999999999999888999999999999999999999999999999988877776666544
Q ss_pred hCccccc---------cccccccchHHHhh-----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009045 324 YGSVLAG---------AGANTGEGACLDQA-----SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 389 (546)
Q Consensus 324 ~~~~~~~---------~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 389 (546)
.....+. ...-+..+..+.+. .+-+.|+..+-..++. -+++..+|...|..+++..+|+..++
T Consensus 233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhhhhheeeecccccHHHHHHHHh
Confidence 2211110 00000001111100 0111222222222221 35677777777888888888777665
Q ss_pred HHHhcCCCChhHHHHHHH--HHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHH
Q 009045 390 KAAKLEPNCMSTRYAVAV--SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 467 (546)
Q Consensus 390 ~al~~~p~~~~~~~~l~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 467 (546)
.++|..+.-+...+. ..+++...+.+..+ ..+.+...+...... -+.......++..++-..++++.+..
T Consensus 310 ---dl~PttP~EyilKgvv~aalGQe~gSreHlK----iAqqffqlVG~Sa~e-cDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 310 ---DLDPTTPYEYILKGVVFAALGQETGSREHLK----IAQQFFQLVGESALE-CDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred ---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHH----HHHHHHHHhcccccc-cccccchHHHHHHHHHHHHHHHHHHH
Confidence 456666655544333 22222222221111 111111222111111 11111233344444444455554444
Q ss_pred HHhh--ccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009045 468 EENE--LSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD-PKAAHIWANLANAYYLTGDHRSSGKCL 534 (546)
Q Consensus 468 ~~~~--l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 534 (546)
+... .-..+....+++|+++...|+|.+|.+.|-++-..+ .+.......|++||.+.|+.+.|-..|
T Consensus 382 lnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 382 LNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3331 113334455566666666666666666666554333 222334455666666666666665554
No 100
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.53 E-value=3.7e-13 Score=109.78 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=112.5
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
..|++++..+|++..+.+.+|.++...|++++|+..|++++..+|.++.++..+|.++..+|++++|+.+|+++++.+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
+...++.+|.++. ..|++++|+..|+++++.+|++....
T Consensus 84 ~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLL---------------------ALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhccccchHH
Confidence 9999999999888 89999999999999999999876643
No 101
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=5.5e-13 Score=108.75 Aligned_cols=119 Identities=21% Similarity=0.217 Sum_probs=113.2
Q ss_pred HHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHH
Q 009045 263 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 342 (546)
Q Consensus 263 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (546)
..|++++..+|++..+.+.+|..+...|++++|+..|++++..+|.+...+..+|.++.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--------------------- 62 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ--------------------- 62 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------
Confidence 46889999999999999999999999999999999999999999999999999999888
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
..|++++|+..++++++.+|.++..++.+|.++...|++++|+..|+++++.+|++....
T Consensus 63 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 63 MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 889999999999999999999999999999999999999999999999999999886543
No 102
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.51 E-value=3.5e-11 Score=117.62 Aligned_cols=226 Identities=13% Similarity=0.128 Sum_probs=133.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+.+++.....++...|++++|++++++....-. |. ..+....|.++ +..|++++|..
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~---------Dk---~~~~E~rA~ll-----------~kLg~~~eA~~ 59 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQIL---------DK---LAVLEKRAELL-----------LKLGRKEEAEK 59 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCC---------CH---HHHHHHHHHHH-----------HHcCCHHHHHH
Confidence 356677777788888888888888877554421 11 12223333333 34445588888
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcC-----ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSG-----RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS-AKCFQDLI 303 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al 303 (546)
.|...++.+|++...+..+..+..... +.+.-...|+......|....+. .+...+..-..|... ..++...+
T Consensus 60 ~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 60 IYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHH
Confidence 888888888888777777777763332 45555666776666655432111 111111111111111 11111111
Q ss_pred hh--------------CCCCHHHHHHHHHHHHHhhCcc--------------ccccccccccchHHHhhcCHHHHHHHHH
Q 009045 304 LK--------------DQNHPAALINYAALLLCKYGSV--------------LAGAGANTGEGACLDQASAVNVAKECLL 355 (546)
Q Consensus 304 ~~--------------~p~~~~~~~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 355 (546)
.. +|....+...+..-+....... ......++.++..|...|++++|+++++
T Consensus 139 ~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 139 RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 11 1111111112222111110000 0001223345777779999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 356 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 356 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
++|+..|..++.+...|.++...|++.+|...++.+..+++.+-
T Consensus 219 ~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 219 KAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 99999999999999999999999999999999999999998764
No 103
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.7e-10 Score=103.91 Aligned_cols=271 Identities=19% Similarity=0.101 Sum_probs=194.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHh
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-PAALINYAALLLCK 323 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~ 323 (546)
...-|..-+..|+|.+|.....+.-+..+.-..++..-+..-..+|+++.|-.++.++-+..+++ .......+.++.
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll-- 164 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL-- 164 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH--
Confidence 33456666778999999999999887777767777777888889999999999999998884443 333455555555
Q ss_pred hCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh---
Q 009045 324 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS--- 400 (546)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 400 (546)
..|+++.|.....++++..|.++.+......+|...|+|.+....+.+.-+..--+..
T Consensus 165 -------------------~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 165 -------------------NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -------------------hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 8899999999999999999999999999999999999999999888877665332221
Q ss_pred HHHHHHHHH-HHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc------
Q 009045 401 TRYAVAVSR-IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS------ 473 (546)
Q Consensus 401 ~~~~l~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~------ 473 (546)
-+-..+... +.+..... ....+..-.+.. ......++.+-..++.-+..+|+.++|.+.....++
T Consensus 226 ~le~~a~~glL~q~~~~~-~~~gL~~~W~~~-------pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 226 RLEQQAWEGLLQQARDDN-GSEGLKTWWKNQ-------PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HHHHHHHHHHHHHHhccc-cchHHHHHHHhc-------cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 112223222 22222221 111111111111 111223456667777777778888777776654332
Q ss_pred ---------------------------chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 474 ---------------------------KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 474 ---------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
+..+..+..+|..+.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+
T Consensus 298 L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~ 376 (400)
T COG3071 298 LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGE 376 (400)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC
Confidence 233355778999999999999999999999998875 5678999999999999
Q ss_pred hHHHHHHHHHHHHHhcccC
Q 009045 527 HRSSGKCLEKVLMVYCSSN 545 (546)
Q Consensus 527 ~~~A~~~~~~al~~~~~~~ 545 (546)
..+|.+.+++++.++.+++
T Consensus 377 ~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 377 PEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHHHhcCCC
Confidence 9999999999997775554
No 104
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.51 E-value=9.8e-14 Score=124.26 Aligned_cols=277 Identities=16% Similarity=0.136 Sum_probs=198.1
Q ss_pred chhhhhHHhhccchhhhhhHHHHHhHhcCCCCcc----cccccCCC-----CchHHHHH------HHHHHHhCCCCHHHH
Q 009045 90 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADG----DQSGLGTS-----SSSREEKG------LVHVARKMPKNAHAH 154 (546)
Q Consensus 90 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~----~~~~~g~~-----~~~~a~~~------~~~~l~~~p~~~~~~ 154 (546)
...+|..+++.|+|..-+ .-|..||+.+..+.. .+..+|+. ++.+|.+. +.+.+...-..+.+-
T Consensus 20 LalEGERLck~gdcraGv-~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGV-DFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHHHHhccchhhhH-HHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 356899999999999887 889999998876432 23345554 22333331 122222222345566
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccc-c--------ccChhhHH
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLD-K--------ELEPEELE 225 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~--------~~~~~~~~ 225 (546)
-+||+.+-..|.|++|+.+..+-+.+..+ -.+-+.-.++++++|.+|...|....- . .-....++
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~are------LgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARE------LGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHH------HhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 78999999999999999999998887432 344555678889999999888876110 0 01123456
Q ss_pred HHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHH
Q 009045 226 EILSKLKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 293 (546)
.|.++|..-+++.... ..++-+||..|+-+|+|+.|+..-+.-+.+.... ..++.++|.++.-+|+++
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence 6667776666543322 3367789999999999999999988877764332 458899999999999999
Q ss_pred HHHHHHHHHHhhC----CCCHH--HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC----
Q 009045 294 QSAKCFQDLILKD----QNHPA--ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---- 363 (546)
Q Consensus 294 ~A~~~~~~al~~~----p~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---- 363 (546)
.|+++|++.+.+. ....+ ..+. +|..|.-..++++||.++.+-+.+...
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYS---------------------LgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr 311 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYS---------------------LGNTYTLLKEVQKAITYHQRHLAIAQELEDR 311 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHH---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999987542 22222 2334 445555888999999999998776432
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 364 --AAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 364 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
...+++.||.++..+|..++|+.+.+..+++
T Consensus 312 iGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 312 IGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5678999999999999999999998887765
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.51 E-value=2.3e-12 Score=124.06 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=164.8
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHH
Q 009045 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 227 (546)
Q Consensus 148 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 227 (546)
|..+..-..++..+...|-...|+..|++.-.. .....+|..+|+ ..+|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw--------------------~~vi~CY~~lg~-----------~~ka 443 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMW--------------------DPVILCYLLLGQ-----------HGKA 443 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHH--------------------HHHHHHHHHhcc-----------cchH
Confidence 556667788999999999999999999986443 233344444444 4899
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 228 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 228 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
..+..+-++ .|.++..|..+|.+....--|++|.++.+.. +..+...+|......++|.++.+.++..++++|
T Consensus 444 eei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 444 EEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred HHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 999999888 6667888999998888777777777766653 345778888888889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 009045 308 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387 (546)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 387 (546)
-....|+.+|.+.+ +.++++.|.++|.+++.++|++.++|.+++.+|...|+..+|...
T Consensus 517 lq~~~wf~~G~~AL---------------------qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 517 LQLGTWFGLGCAAL---------------------QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred cchhHHHhccHHHH---------------------HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 99999999999888 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCChhHH
Q 009045 388 LEKAAKLEPNCMSTR 402 (546)
Q Consensus 388 ~~~al~~~p~~~~~~ 402 (546)
++++++.+-++...|
T Consensus 576 l~EAlKcn~~~w~iW 590 (777)
T KOG1128|consen 576 LKEALKCNYQHWQIW 590 (777)
T ss_pred HHHHhhcCCCCCeee
Confidence 999999886665443
No 106
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=119.71 Aligned_cols=104 Identities=20% Similarity=0.347 Sum_probs=99.1
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
+++.++|.+|+..|.+||+++|.++..|.+++.+|.++|.++.|++.++.+|.++|....+|..||.+|..+|++.+|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
.|+++|.++|++...+.+|..+-.
T Consensus 171 aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHHHHH
Confidence 999999999999987777766554
No 107
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=6.1e-10 Score=105.07 Aligned_cols=226 Identities=12% Similarity=0.093 Sum_probs=150.5
Q ss_pred hhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC--CchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChh
Q 009045 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS--SSSREEKGLVHVARKMPKN---AHAHFLLGLMYQRLGQPL 168 (546)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~--~~~~a~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~ 168 (546)
-....+-|++..++ ....+.+...|+...+++..-.. +.++.++++ ..++.++.. ....+..+.|.+++++.+
T Consensus 19 ln~~~~~~e~e~a~-k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~AL-k~ikk~~~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAV-KTANKILSIVPDDEDAIRCKVVALIQLDKYEDAL-KLIKKNGALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHH-HHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHH-HHHHhcchhhhcchhhHHHHHHHHHcccHH
Confidence 34455556666666 88889999999988887765443 778888888 888888742 222368999999999999
Q ss_pred HHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHH
Q 009045 169 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 248 (546)
Q Consensus 169 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 248 (546)
+|+..++ .++. . ++.+. ...+.+ .++.|+|++|+..|+..++.+.++.+.....
T Consensus 97 ealk~~~-~~~~--~-------~~~ll-----~L~AQv-----------lYrl~~ydealdiY~~L~kn~~dd~d~~~r~ 150 (652)
T KOG2376|consen 97 EALKTLK-GLDR--L-------DDKLL-----ELRAQV-----------LYRLERYDEALDIYQHLAKNNSDDQDEERRA 150 (652)
T ss_pred HHHHHHh-cccc--c-------chHHH-----HHHHHH-----------HHHHhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 9999999 2221 1 11111 111111 3467888999999999998877766554433
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHH
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPN-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD--------QNHPAALINYAAL 319 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~ 319 (546)
...-... -..+ . ..+.+...|. ..+.+++.+.++...|+|.+|++.+++++++. .+..+.-..+..+
T Consensus 151 nl~a~~a--~l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 151 NLLAVAA--ALQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred HHHHHHH--hhhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 3222111 1111 1 3344444554 67899999999999999999999999995432 1112222222222
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
.. .++.++...|+.++|...|...++.+|.+.
T Consensus 227 rv--------------QlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 227 RV--------------QLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HH--------------HHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 22 235556699999999999999999887654
No 108
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=5.2e-13 Score=115.75 Aligned_cols=120 Identities=22% Similarity=0.207 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
++-+-.-|.-+++.++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++..+.++.++|....+|..+|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34455667778888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 009045 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 382 (546)
.+|++++|++.|+++|+++|++...+.+|..+-..+++..
T Consensus 161 ---------------------~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ---------------------ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ---------------------ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 7788888888888888888888888777777766666555
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.49 E-value=7.9e-12 Score=127.47 Aligned_cols=202 Identities=11% Similarity=0.085 Sum_probs=168.7
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
..++.+.++..++.+|+....++.+|.++...+++.++... .++...+.
T Consensus 47 ~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~----------------------------- 95 (906)
T PRK14720 47 TDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ----------------------------- 95 (906)
T ss_pred HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc-----------------------------
Confidence 38888899999999999999999999999999998888877 66665322
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
..++ .+++++...+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... ++
T Consensus 96 --------~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 96 --------NLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred --------ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH
Confidence 2334 5666666666668888889999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH-----
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI----- 367 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~----- 367 (546)
++|++++.+++.. +. ..+++..+.+++.+.+..+|++.+.
T Consensus 166 ~KA~~m~~KAV~~--------------~i---------------------~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~ 210 (906)
T PRK14720 166 EKAITYLKKAIYR--------------FI---------------------KKKQYVGIEEIWSKLVHYNSDDFDFFLRIE 210 (906)
T ss_pred HHHHHHHHHHHHH--------------HH---------------------hhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence 9999999999876 22 4456777888888888877775443
Q ss_pred ---------------HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 368 ---------------WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 368 ---------------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
+.-+-..|...++|++++..++.+++.+|++..+...++.+..
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2233377888999999999999999999999888877776544
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.48 E-value=1e-10 Score=127.47 Aligned_cols=320 Identities=13% Similarity=0.028 Sum_probs=208.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
++.....++.++...|++++|...+.++....+..... ..+... ..+....+.+ +...|++++|..
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~-~~~~~~--~~~~~~~a~~-----------~~~~g~~~~A~~ 473 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIE-LDGTLQ--AEFNALRAQV-----------AINDGDPEEAER 473 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcc-cchhHH--HHHHHHHHHH-----------HHhCCCHHHHHH
Confidence 35556677888889999999999999887753321100 011111 1222223333 245667799999
Q ss_pred HHHHHHhcCccc-----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHH
Q 009045 230 KLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 230 ~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
.+++++...+.. ..+...+|.++...|++++|...+.+++...... ..++..+|.++...|++++|...
T Consensus 474 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~ 553 (903)
T PRK04841 474 LAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYET 553 (903)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999998854432 2356778999999999999999999998763321 34667889999999999999999
Q ss_pred HHHHHhhCCCC--------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-----CH
Q 009045 299 FQDLILKDQNH--------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-----AA 365 (546)
Q Consensus 299 ~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~ 365 (546)
+++++...... ...+..+ |.++...|++++|...+.+++..... ..
T Consensus 554 ~~~al~~~~~~~~~~~~~~~~~~~~l---------------------a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 554 QEKAFQLIEEQHLEQLPMHEFLLRIR---------------------AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHH---------------------HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 99998763221 1112223 34444889999999999999876332 34
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcH
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 445 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (546)
..+..+|.++...|++++|...+.++..+.+...........
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~-------------------------------------- 654 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN-------------------------------------- 654 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH--------------------------------------
Confidence 566778999999999999999999998764432110000000
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhccchhh------hHHhhHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHH
Q 009045 446 IAWAGFAAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADP------KAAHI 513 (546)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~ 513 (546)
........+...|+.+.|............. ..+..++.++...|++++|+..+++++.... ....+
T Consensus 655 -~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 655 -ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 0000011222345555555554442221111 1134566777788888888888888776521 22456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 514 WANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+..+|.++...|+.++|...+.+++++...
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 777888888888888888888888877644
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.47 E-value=3.7e-12 Score=129.09 Aligned_cols=139 Identities=14% Similarity=0.107 Sum_probs=126.8
Q ss_pred HHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh
Q 009045 197 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 276 (546)
...+..++.+...+|.. ++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|+++
T Consensus 86 ~~~~~~La~i~~~~g~~-----------~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 86 ELFQVLVARALEAAHRS-----------DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 45566667666555555 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
.+++.+|.++..+|++++|+..|++++..+|++..++..+|.++. ..|+.++|...|++
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~---------------------~~G~~~~A~~~~~~ 213 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLT---------------------RRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---------------------HcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988 89999999999999
Q ss_pred HHhcCCCCHHH
Q 009045 357 ALKADPKAAHI 367 (546)
Q Consensus 357 al~~~p~~~~~ 367 (546)
+++....-...
T Consensus 214 a~~~~~~~~~~ 224 (694)
T PRK15179 214 GLDAIGDGARK 224 (694)
T ss_pred HHHhhCcchHH
Confidence 99987664444
No 112
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.46 E-value=4e-12 Score=101.09 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=90.8
Q ss_pred HhcC-cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 009045 235 MQSD-TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 235 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 313 (546)
..+. ++.-+..+.+|..++..|++++|...|+-+..++|.+...|++||.++..+|++.+|+..|.+++.++|+++..+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3456 677778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 361 (546)
.+.|.+++ ..|+.+.|++.|+.++...
T Consensus 107 ~~ag~c~L---------------------~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYL---------------------ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHH---------------------HcCCHHHHHHHHHHHHHHh
Confidence 88888887 8888888888888888876
No 113
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=9.5e-10 Score=104.63 Aligned_cols=417 Identities=14% Similarity=0.097 Sum_probs=265.8
Q ss_pred hHHhhccchhhhhhHHHHHhHhcCCCCcccccccC---------CCCchHH----HHHHHHHHHhCCCCHHHHHHHHHHH
Q 009045 95 KKINKLGKCRSRISSKMDSALEFGVDADGDQSGLG---------TSSSSRE----EKGLVHVARKMPKNAHAHFLLGLMY 161 (546)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g---------~~~~~~a----~~~~~~~l~~~p~~~~~~~~lg~~~ 161 (546)
..-++.|.....+.-.|++++...|.+...|+..- ......+ -.+|++++..--+-+.+|.......
T Consensus 33 YIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l 112 (835)
T KOG2047|consen 33 YIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFL 112 (835)
T ss_pred HHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33445554444444568899999999888777532 1122222 2378888887788899999999999
Q ss_pred HHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCccc
Q 009045 162 QRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 241 (546)
Q Consensus 162 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 241 (546)
..+|+...-...|.+|+...|-.......+-++..+. ..+-.+-++..|++-++..|..
T Consensus 113 ~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~---------------------~~~lPets~rvyrRYLk~~P~~ 171 (835)
T KOG2047|consen 113 IKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVE---------------------SHGLPETSIRVYRRYLKVAPEA 171 (835)
T ss_pred HhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHH---------------------hCCChHHHHHHHHHHHhcCHHH
Confidence 9999999999999999998775533322222222111 1223378888888888888875
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhc------------------------CCCC---------------------h
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAV------------------------DPNN---------------------C 276 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------~p~~---------------------~ 276 (546)
.+ ..-..+...+++++|.+.|...+.. +|+. .
T Consensus 172 ~e---eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g 248 (835)
T KOG2047|consen 172 RE---EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLG 248 (835)
T ss_pred HH---HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHH
Confidence 33 3344566777888887777766542 2211 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHH-----Hhh------Ccccc--c----------
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ---NHPAALINYAALLL-----CKY------GSVLA--G---------- 330 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~-----~~~------~~~~~--~---------- 330 (546)
..|..||..|.+.|.+++|...|++++..-- +....+..++..-. ... ..... +
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 3588899999999999999999999986421 11111111111100 000 00000 0
Q ss_pred ------------------cccccccchHHHhhcCHHHHHHHHHHHHhc-CCC-----CHHHHHHHHHHHHHcCChHHHHH
Q 009045 331 ------------------AGANTGEGACLDQASAVNVAKECLLAALKA-DPK-----AAHIWANLANAYYLTGDHRSSGK 386 (546)
Q Consensus 331 ------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~l~~~~~~~g~~~~A~~ 386 (546)
.......-++-...|+..+-+..|..+++. +|. -...|..+|..|...|+.+.|..
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 000011233444567888888999888764 554 35689999999999999999999
Q ss_pred HHHHHHhcCCCCh----hHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHh--------cCCCCCC------CcHHHH
Q 009045 387 CLEKAAKLEPNCM----STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILR--------EGDPVQI------EPPIAW 448 (546)
Q Consensus 387 ~~~~al~~~p~~~----~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------~~~~~~ 448 (546)
.|+++++..-... ..|..-|...+.. +.+..+..-+..... ..+...| ....+|
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh--------~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRH--------ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999998754433 2233333222211 111111111111111 1111111 345678
Q ss_pred HHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHH---HHHH
Q 009045 449 AGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKAD--PKAAHIWANL---ANAY 521 (546)
Q Consensus 449 ~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l---g~~~ 521 (546)
..++......|-++.....|.+.++ -..+....+.|..+....-++++.+.|++-+.+. |.-.++|... ...-
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 8888888999999999999988655 4455566677778888888999999999999876 4456666543 3333
Q ss_pred HhcCChHHHHHHHHHHHHHhcc
Q 009045 522 YLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 522 ~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+..-+.+.|...|++|++..++
T Consensus 561 ygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred hcCCCHHHHHHHHHHHHhcCCH
Confidence 4455789999999999996653
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.43 E-value=7.8e-12 Score=120.44 Aligned_cols=206 Identities=15% Similarity=0.124 Sum_probs=153.4
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
..|-...|+..|++ ...|-....||...|+..+|.....+-++ .|.++..|..+|.+.....-|++|.++.
T Consensus 410 slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawEls 480 (777)
T KOG1128|consen 410 SLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELS 480 (777)
T ss_pred HcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHh
Confidence 33444888888876 35667778888888988888888888888 5666788888888877776666666666
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009045 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 379 (546)
Q Consensus 300 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 379 (546)
+..- ..+...+|.... ..++|+++.++++..++++|-....|+.+|.+..+.+
T Consensus 481 n~~s------arA~r~~~~~~~---------------------~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 481 NYIS------ARAQRSLALLIL---------------------SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred hhhh------HHHHHhhccccc---------------------cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh
Confidence 5432 223333443333 6789999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcc
Q 009045 380 DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH 459 (546)
Q Consensus 380 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (546)
+++.|.++|..++.++|++.. +|++++..|...+
T Consensus 534 k~q~av~aF~rcvtL~Pd~~e----------------------------------------------aWnNls~ayi~~~ 567 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEPDNAE----------------------------------------------AWNNLSTAYIRLK 567 (777)
T ss_pred hhHHHHHHHHHHhhcCCCchh----------------------------------------------hhhhhhHHHHHHh
Confidence 999999999999999998764 4555666666666
Q ss_pred cHHHHHHHHHhhccc--hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC
Q 009045 460 EVAAAFETEENELSK--MEECAGAGESAFLDQASAVNVAKECLLAALKAD 507 (546)
Q Consensus 460 ~~~~A~~~~~~~l~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 507 (546)
+-.+|...+.++++- .+-..|-+.-.+....|.+++|++.|.+.+.+.
T Consensus 568 ~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 568 KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 666666666665552 233445555556777777888888777777653
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.40 E-value=8.2e-12 Score=99.30 Aligned_cols=109 Identities=14% Similarity=0.051 Sum_probs=102.4
Q ss_pred hHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcC
Q 009045 268 LLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 346 (546)
Q Consensus 268 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (546)
+..+. ++..+..+.+|..++..|++++|...|+-+..++|.+...|++||.++. ..|+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q---------------------~~g~ 84 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ---------------------AQKH 84 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---------------------HHhh
Confidence 34556 7788899999999999999999999999999999999999999999998 8999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 347 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 347 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+++|+..|.+++.++|+++..+.++|.|++..|+.+.|.+.|+.++.....
T Consensus 85 ~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 85 WGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999988743
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.5e-09 Score=93.81 Aligned_cols=347 Identities=18% Similarity=0.158 Sum_probs=199.0
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
...+++++..-.+.+|++-..+..||.||+...+|..|-.+|++...+.|+... -+.++...
T Consensus 26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q----------YrlY~AQS-------- 87 (459)
T KOG4340|consen 26 YADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ----------YRLYQAQS-------- 87 (459)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH----------HHHHHHHH--------
Confidence 366777777788889999999999999999999999999999999998665311 11111111
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
+++.+.+..|+.....+...+.-.....-.-+-+.+..+++..+....++.-. .+.+....+.|.+.++.|++
T Consensus 88 -----LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 88 -----LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred -----HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccH
Confidence 23445557777766665543222233444455566666777666665554211 14566777777777777777
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc----CCC-----
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPK----- 363 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~----- 363 (546)
+.|++-|+.+++...-++..-++++.+.+ +.|++..|+++....++. .|.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaHy---------------------~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAHY---------------------SSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHH---------------------hhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 77777777777777766666666666666 667777777666555442 332
Q ss_pred --------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHHhhhccC
Q 009045 364 --------------------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN-----CMSTRYAVAVSRIKDAERSQE 418 (546)
Q Consensus 364 --------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~l~~~~~~~~ 418 (546)
-.++....+.++++.|+++.|.+.+.. +-|. ++....++++..+.. +..+
T Consensus 220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n~~~--~p~~ 294 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQALMNMDA--RPTE 294 (459)
T ss_pred eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHHhcccC--Cccc
Confidence 123455566777888888877766532 2222 223344444322211 0000
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc---------------------chhh
Q 009045 419 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---------------------KMEE 477 (546)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---------------------~~~~ 477 (546)
. ...+.-.+. ..|-.++.+.++-.+|.+..-++-|-..+..... ..+.
T Consensus 295 g-------~~KLqFLL~----~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pE 363 (459)
T KOG4340|consen 295 G-------FEKLQFLLQ----QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPE 363 (459)
T ss_pred c-------HHHHHHHHh----cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHH
Confidence 0 000111111 1222333444444444444444444333221000 0011
Q ss_pred hHHh---hHHHHH-H----------------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009045 478 CAGA---GESAFL-D----------------QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 537 (546)
Q Consensus 478 ~~~~---~la~~~-~----------------~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (546)
.+.- .++..+ . ......+|++.|+.++++. ..++...+++|+...+|..+.+.|++.
T Consensus 364 ea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~S 440 (459)
T KOG4340|consen 364 EAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKS 440 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHH
Confidence 1100 000000 0 0011455666777777652 457788999999999999999999999
Q ss_pred HHHhccc
Q 009045 538 LMVYCSS 544 (546)
Q Consensus 538 l~~~~~~ 544 (546)
.+.....
T Consensus 441 vefC~eh 447 (459)
T KOG4340|consen 441 VEFCNDH 447 (459)
T ss_pred Hhhhccc
Confidence 9876543
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.39 E-value=2.8e-10 Score=105.38 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=136.7
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
+|....+++..+..++..|++++|+..++..++..|+|+..+...+.++. ..|+..+|+
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~---------------------~~nk~~~A~ 360 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL---------------------EANKAKEAI 360 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCChHHHH
Confidence 37888999999999999999999999999999999999999988888887 899999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHH
Q 009045 352 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 431 (546)
Q Consensus 352 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 431 (546)
+.+++++.++|.....+.++|.+|.+.|++.+|+..++..+..+|+++
T Consensus 361 e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp-------------------------------- 408 (484)
T COG4783 361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP-------------------------------- 408 (484)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc--------------------------------
Confidence 999999999999999999999999999999999999999999999875
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC
Q 009045 432 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 507 (546)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 507 (546)
..|..++..|..+|+..++...+.. .|...|++++|+..+..+.+..
T Consensus 409 --------------~~w~~LAqay~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 409 --------------NGWDLLAQAYAELGNRAEALLARAE---------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred --------------hHHHHHHHHHHHhCchHHHHHHHHH---------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 4567777778888877776655443 7788889999999998888765
No 118
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=1.6e-09 Score=97.67 Aligned_cols=299 Identities=16% Similarity=0.072 Sum_probs=204.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHH
Q 009045 154 HFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKE 233 (546)
Q Consensus 154 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~ 233 (546)
...-|..-+..|+|.+|.....++-+..+ .|....+. -+.+ .-+.|+++.+-.++.+
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e-------~p~l~~l~-----aA~A-----------A~qrgd~~~an~yL~e 143 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGE-------QPVLAYLL-----AAEA-----------AQQRGDEDRANRYLAE 143 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCc-------chHHHHHH-----HHHH-----------HHhcccHHHHHHHHHH
Confidence 34456666778999999999999776533 22222111 1112 2245667999999999
Q ss_pred HHhcCcc-cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 009045 234 SMQSDTR-QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 312 (546)
Q Consensus 234 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 312 (546)
+-+..++ .......++.+....|+++.|.....++++..|.++.++.....+|...|++......+.+.-+..--+..-
T Consensus 144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e 223 (400)
T COG3071 144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE 223 (400)
T ss_pred HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence 9888443 355777889999999999999999999999999999999999999999999999999998877654333222
Q ss_pred HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH---HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009045 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK---ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 389 (546)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~---~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 389 (546)
...+-.--+. | ++.+.++-..+. .+++..-..-..++.....++.-+...|++++|.+..+
T Consensus 224 ~~~le~~a~~---------------g-lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 224 AARLEQQAWE---------------G-LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred HHHHHHHHHH---------------H-HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 2111111100 0 001222222222 23333222223467788888999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q 009045 390 KAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE 469 (546)
Q Consensus 390 ~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 469 (546)
.+++..-+.. ....+.. ....+..+ ..+.++......+++|..+..+|..+.+.+.+.+|...++
T Consensus 288 ~~Lk~~~D~~-L~~~~~~------l~~~d~~~--------l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 288 DALKRQWDPR-LCRLIPR------LRPGDPEP--------LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred HHHHhccChh-HHHHHhh------cCCCCchH--------HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9998765543 1111111 11111111 1122222333356778999999999999999999999999
Q ss_pred hhccchhh-hHHhhHHHHHHHhccHHHHHHHHHHHHHh
Q 009045 470 NELSKMEE-CAGAGESAFLDQASAVNVAKECLLAALKA 506 (546)
Q Consensus 470 ~~l~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 506 (546)
.+++..+. ..+..+|.++.+.|+..+|...++.++.+
T Consensus 353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 98885554 55678999999999999999999999854
No 119
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.32 E-value=5e-11 Score=113.02 Aligned_cols=112 Identities=12% Similarity=0.131 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 325 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 325 (546)
...|..++..|+|++|+..|++++.++|++..+++.+|.+|..+|++++|+..+++++.++|.+..+++.+|.++.
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~---- 81 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM---- 81 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH----
Confidence 3445555556666666666666666666666666666666666666666666666666666666666555555555
Q ss_pred ccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009045 326 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 378 (546)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 378 (546)
..|++++|+..|+++++++|++..+...++.+...+
T Consensus 82 -----------------~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 82 -----------------KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -----------------HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 556666666666666666666665555555554433
No 120
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.30 E-value=1.4e-09 Score=96.49 Aligned_cols=315 Identities=17% Similarity=0.119 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
+.-...-|.-++...++.+|+..+.+.+....+ .......+-.+..+ .-+.|.+++++.+
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~---------~~~Rf~~lG~l~~a-----------~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSD---------LMGRFRVLGCLVTA-----------HSEMGRYKEMLKF 65 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHH---------HHHHHHHhccchhh-----------hhhhHHHHHHHHH
Confidence 344566677788889999999999998876321 11111111111222 3355666777665
Q ss_pred HHHHHhc----Cc--ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-----hHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 231 LKESMQS----DT--RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-----CDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 231 ~~~al~~----~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
--..+.. +. -..+++.+++..+.+..++.+++.+-+..+.+.... ..+...+|.++..++.++++++.|
T Consensus 66 a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesf 145 (518)
T KOG1941|consen 66 AVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESF 145 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHH
Confidence 4443332 11 124588899999999999999999999888774332 367778999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC----------CHHHHH
Q 009045 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----------AAHIWA 369 (546)
Q Consensus 300 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~ 369 (546)
++++++..++.+.... ......+|..+.+..++++|+-+..++.++-.. ...+.+
T Consensus 146 e~A~~~A~~~~D~~LE---------------lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly 210 (518)
T KOG1941|consen 146 EKALRYAHNNDDAMLE---------------LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY 210 (518)
T ss_pred HHHHHHhhccCCceee---------------eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence 9999876554443322 222334566667999999999999999887432 234677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHH
Q 009045 370 NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 449 (546)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (546)
.++..+..+|..-.|.++.+++.++.-...+- +.......
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdr----------------------------------------a~~arc~~ 250 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDR----------------------------------------ALQARCLL 250 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhCCh----------------------------------------HHHHHHHH
Confidence 88999999999999999999998763221100 01123567
Q ss_pred HHHHHHHhcccHHHHHHHHHhhccc--------hhhhHHhhHHHHHHHhccHHH-----HHHHHHHHHHhCCCC------
Q 009045 450 GFAAVQKTHHEVAAAFETEENELSK--------MEECAGAGESAFLDQASAVNV-----AKECLLAALKADPKA------ 510 (546)
Q Consensus 450 ~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~------ 510 (546)
.+|++|...|+.+.|+..|+.+... ....++.+.+.++....-..+ |++.-++++++...-
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~v 330 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSV 330 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHH
Confidence 7889999999999999988875542 223556677777766555555 888888888765432
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
-..+..++.+|..+|.-++=...+.++-+.
T Consensus 331 lK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 331 LKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 356788999999999888877777665443
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.29 E-value=7.9e-11 Score=107.43 Aligned_cols=251 Identities=14% Similarity=0.094 Sum_probs=169.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
++-.|+|..++..++ ....++ ........+.++++.+|+++..+...... .+....+...++..+...++.+.++
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHHH
Confidence 345688899998777 223333 44567788999999999998877655442 2334556677777766656777777
Q ss_pred HHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009045 297 KCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374 (546)
Q Consensus 297 ~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 374 (546)
..++..+..... +.......|.++ ...|++++|++.+.+. .+.+.......+
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~---------------------~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi 140 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATIL---------------------FHEGDYEEALKLLHKG-----GSLELLALAVQI 140 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHH---------------------CCCCHHHHHHCCCTTT-----TCHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHH---------------------HHcCCHHHHHHHHHcc-----CcccHHHHHHHH
Confidence 777665533322 222233333333 3789999999888764 568888888999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
|..+++++.|.+.++.+-+.+.+........ +|..+
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~-----------------------------------------awv~l--- 176 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQIDEDSILTQLAE-----------------------------------------AWVNL--- 176 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCCSCCHHHHHHHH-----------------------------------------HHHHH---
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcHHHHHHHH-----------------------------------------HHHHH---
Confidence 9999999999999999988877644222222 22221
Q ss_pred HHhcccHHHHHHHHHhhccc--hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh-HHHH
Q 009045 455 QKTHHEVAAAFETEENELSK--MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH-RSSG 531 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~ 531 (546)
......+.+|+..|....+. .....+.+++.+++.+|+|++|...++++++.+|++++++.+++.+...+|+. +.+.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 11123577777777774443 33455778999999999999999999999999999999999999999999998 4555
Q ss_pred HHHHHHHHHhc
Q 009045 532 KCLEKVLMVYC 542 (546)
Q Consensus 532 ~~~~~al~~~~ 542 (546)
+++.+.....+
T Consensus 257 ~~l~qL~~~~p 267 (290)
T PF04733_consen 257 RYLSQLKQSNP 267 (290)
T ss_dssp HHHHHCHHHTT
T ss_pred HHHHHHHHhCC
Confidence 66666555444
No 122
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.29 E-value=2.8e-11 Score=114.71 Aligned_cols=104 Identities=8% Similarity=0.085 Sum_probs=99.1
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
++..|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
.|+++++++|++......++.+..
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999888777754
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=5.6e-10 Score=103.44 Aligned_cols=142 Identities=19% Similarity=0.221 Sum_probs=133.0
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
+|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++.++|+....++++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
.+++ +.|++.+|+..++..+..+|+++..|..|+.+|..+|+..+|...+-+.......
T Consensus 382 ~all---------------------~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 382 QALL---------------------KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHHH---------------------hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 9998 9999999999999999999999999999999999999999999999888877665
Q ss_pred Chh
Q 009045 398 CMS 400 (546)
Q Consensus 398 ~~~ 400 (546)
...
T Consensus 441 ~~~ 443 (484)
T COG4783 441 LEQ 443 (484)
T ss_pred HHH
Confidence 433
No 124
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.25 E-value=2.2e-08 Score=95.67 Aligned_cols=214 Identities=15% Similarity=0.166 Sum_probs=153.7
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-hcccchhccchhhHHHHHHHhhccccccccCCCccccccCh
Q 009045 143 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEP 221 (546)
Q Consensus 143 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 221 (546)
+++.+|.+.+-|.....++ .|+..+-+..|..|+.. +|... .-.....|...+..|. ..
T Consensus 341 lLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka-------~Gs~~~Lw~~faklYe-----------~~ 400 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKA-------VGSPGTLWVEFAKLYE-----------NN 400 (835)
T ss_pred HHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccC-------CCChhhHHHHHHHHHH-----------hc
Confidence 5677888888887776655 57888888888888764 33321 1112344555555543 44
Q ss_pred hhHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC------------------ChHHH
Q 009045 222 EELEEILSKLKESMQSDT----RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN------------------NCDCI 279 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~ 279 (546)
|+++.|...|+++.+..- +-+.+|...|..-.+..+++.|+.+.+++...-.. ...+|
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 555999999999887543 23568888888888899999999999888765211 23467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 280 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
..++.+....|-++.....|++.+.+.--.+....+.|..+. ...-++++.+.|++.+.
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE---------------------eh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE---------------------EHKYFEESFKAYERGIS 539 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------------hhHHHHHHHHHHHcCCc
Confidence 778888888899999999999999888888888888887776 66778999999999888
Q ss_pred cCC--CCHHHHHHHH---HHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 360 ADP--KAAHIWANLA---NAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 360 ~~p--~~~~~~~~l~---~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+.+ .-.++|...- ..-+.--+.+.|...|++|++..|.
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 864 3444444322 2223344678899999999998774
No 125
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.25 E-value=3.5e-10 Score=95.73 Aligned_cols=131 Identities=13% Similarity=0.180 Sum_probs=102.6
Q ss_pred cChhhHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 293 (546)
+-...+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 33444677777776666555544 6688999999999999999999999999887653 458999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHH-------HHHHHHHHHHhcCCC
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN-------VAKECLLAALKADPK 363 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~A~~~~~~al~~~p~ 363 (546)
+|+..|++++.++|.....+..++.++.. +|..+...|+++ +|+.+|++++..+|.
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~--------------~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHY--------------RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHH--------------hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999988873 344444555555 455555555555654
No 126
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=2.9e-09 Score=92.03 Aligned_cols=175 Identities=14% Similarity=0.070 Sum_probs=139.3
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
++..+|..|++++.--.+..|.+...+..+|.||+...+|..|..+|.+.-.+.|.........+..+++.+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhCCCCH-HHHHHHHHHHHHhhC-----------ccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 299 FQDLILKDQNHP-AALINYAALLLCKYG-----------SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 299 ~~~al~~~p~~~-~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
....... |.-. .....-+.+.+...+ .....+....+.|-+..+.|+++.|++-|+.+++...-++.
T Consensus 101 ~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 101 AFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 7655432 1110 111111111111000 00123555667788888999999999999999999998999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 367 IWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
.-++++.++++.|++..|+++..+.++.
T Consensus 180 lAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 180 LAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999988777654
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.24 E-value=2e-09 Score=95.83 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=132.9
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHH---HHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcC--
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVV---WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSG-- 290 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g-- 290 (546)
+..|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..|++.++.+|++ ..+++.+|.++..++
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS 122 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence 56788999999999999999987654 4899999999999999999999999998876 567889998865544
Q ss_pred -------------C---HHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 291 -------------D---MEQSAKCFQDLILKDQNHPAAL---INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 291 -------------~---~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
+ ..+|+..|++.++..|+...+- ..+..+.... +..-+.+|..|.+.|.|..|+
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l-------a~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL-------AKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCchHHHH
Confidence 1 3578899999999999875432 2222221111 223345788899999999999
Q ss_pred HHHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009045 352 ECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 352 ~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a 391 (546)
.-++.+++..|+ ..+++..++.+|..+|..++|.......
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999887 5678899999999999999998876543
No 128
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=9e-10 Score=96.71 Aligned_cols=127 Identities=20% Similarity=0.268 Sum_probs=108.8
Q ss_pred ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccc
Q 009045 257 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTG 336 (546)
Q Consensus 257 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 336 (546)
..+.-+.-++.-+..+|++.+.|..||.+|+.+|++..|...|.+++++.|++++.+..++.+++...
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a------------ 204 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA------------ 204 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------------
Confidence 34566667777788899999999999999999999999999999999999999999999988887431
Q ss_pred cchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 009045 337 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
......++...+++++.++|.++.+.+.||..++..|+|.+|+..++..++..|.+..-
T Consensus 205 ------~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 205 ------GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred ------CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 23446788999999999999999999999999999999999999999999998877543
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.22 E-value=9.7e-09 Score=91.51 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=47.7
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHH
Q 009045 482 GESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEK 536 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (546)
.+|..|.+.|.|..|+.-++.+++..|+. .++++.++.+|..+|..++|..+...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45668889999999999999999988875 78899999999999999999887654
No 130
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.21 E-value=2.4e-09 Score=93.25 Aligned_cols=175 Identities=19% Similarity=0.190 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
++..++..|..++..|+|.+|+..|++++...|.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s--------------------------------------------- 38 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS--------------------------------------------- 38 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS---------------------------------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------------------------------------------
Confidence 45677777777778888888888777777765543
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHc-----------CCHHHH
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQS-----------GDMEQS 295 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~-----------g~~~~A 295 (546)
|.-..+.+.+|.+++..|++++|+..|++.++..|+++ .+++.+|.+++.+ +...+|
T Consensus 39 ---------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A 109 (203)
T PF13525_consen 39 ---------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKA 109 (203)
T ss_dssp ---------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence 22245777888888888888888888888888887764 5777778776554 334589
Q ss_pred HHHHHHHHhhCCCCHHHH---HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC---HHHHH
Q 009045 296 AKCFQDLILKDQNHPAAL---INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA---AHIWA 369 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 369 (546)
+..|+..+...|+...+- ..+..+... .+..-+.+|..|.+.|.+..|+..++.+++..|+. ..++.
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~ 182 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNR-------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALA 182 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 999999999999876442 222222111 12233456888889999999999999999999985 45788
Q ss_pred HHHHHHHHcCChHHHH
Q 009045 370 NLANAYYLTGDHRSSG 385 (546)
Q Consensus 370 ~l~~~~~~~g~~~~A~ 385 (546)
.++.+|..+|..+.|.
T Consensus 183 ~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 183 RLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHhCChHHHH
Confidence 8899999999888543
No 131
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.20 E-value=6.3e-11 Score=83.48 Aligned_cols=67 Identities=31% Similarity=0.610 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG-DMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 307 (546)
++..|..+|.+++..|++++|+..|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999987
No 132
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=8.5e-08 Score=104.70 Aligned_cols=344 Identities=13% Similarity=-0.026 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
...+...+..+...|++.+|+.++..+-.. ..........+... ...|++..+...
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~d~-------------~~~~~ll~~~a~~l-----------~~~g~~~~l~~~ 396 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAAGDA-------------QLLRDILLQHGWSL-----------FNQGELSLLEEC 396 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-------------HHHHHHHHHhHHHH-----------HhcCChHHHHHH
Confidence 345566677788889988888766554211 11112222222222 223444655555
Q ss_pred HHHHH-hcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 231 LKESM-QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---------NCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 231 ~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
+..+- .....++.....++.++...|++++|...+..+....+. ...+...+|.++...|++++|...++
T Consensus 397 l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 476 (903)
T PRK04841 397 LNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAE 476 (903)
T ss_pred HHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 54431 111223445677888889999999999999988664221 13455667888999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHH
Q 009045 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANA 374 (546)
Q Consensus 301 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~ 374 (546)
+++...+.........+.. .+|.++...|++++|...+++++..... ...++..+|.+
T Consensus 477 ~al~~~~~~~~~~~~~a~~----------------~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 477 LALAELPLTWYYSRIVATS----------------VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhcCCCccHHHHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 9998655432211111111 1344555899999999999999876432 13456788999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCC-----h---hHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCC-CCCcH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNC-----M---STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV-QIEPP 445 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~-----~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 445 (546)
+...|++++|...+++++...... . ..+..++...... .. +..+...+...+...... .....
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-G~-------~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW-AR-------LDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-cC-------HHHHHHHHHHhHHhhhccCchHHH
Confidence 999999999999999998763321 1 1111222211111 11 111211222221111111 11234
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhccchh-----hhHHh----hHHHHHHHhccHHHHHHHHHHHHHhCCCCH----H
Q 009045 446 IAWAGFAAVQKTHHEVAAAFETEENELSKME-----ECAGA----GESAFLDQASAVNVAKECLLAALKADPKAA----H 512 (546)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~ 512 (546)
..+..++.++...|++++|...+.....-.. ..... .....+...|+.+.|..++.......+... .
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 5667789999999999999988877533110 00001 112344567889999999877655332222 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 513 IWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
.+..+|.++...|++++|...+++++....
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~ 722 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENAR 722 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 256889999999999999999999998754
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.18 E-value=8.1e-10 Score=87.82 Aligned_cols=107 Identities=23% Similarity=0.336 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALIN 315 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 315 (546)
+..++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|++++...|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3577889999999999999999999999888876 5688889999999999999999999999888875 456777
Q ss_pred HHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 009045 316 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 369 (546)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 369 (546)
++.++. ..|++++|+.+++++++..|++..+..
T Consensus 82 ~~~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQ---------------------ELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHH---------------------HhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 777766 888999999999999999888766543
No 134
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.1e-09 Score=96.18 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC---CHHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKC 298 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~ 298 (546)
.+.+.-+.-++..+..+|++++-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.+++.+. ...++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 446888888999999999999999999999999999999999999999999999999999999987654 46789999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
++++++.+|.+..+...++..++ ..|+|.+|+..++..++..|.+..
T Consensus 216 l~~al~~D~~~iral~lLA~~af---------------------e~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAF---------------------EQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999888 899999999999999999887543
No 135
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.16 E-value=1.1e-09 Score=92.95 Aligned_cols=84 Identities=18% Similarity=0.356 Sum_probs=76.2
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
.+..+.+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..|++++...|.+...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34556789999999999999999999999999887653 568999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 009045 315 NYAALLL 321 (546)
Q Consensus 315 ~l~~~~~ 321 (546)
.+|.++.
T Consensus 111 ~lg~~~~ 117 (172)
T PRK02603 111 NIAVIYH 117 (172)
T ss_pred HHHHHHH
Confidence 9988887
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.15 E-value=1.8e-09 Score=85.81 Aligned_cols=106 Identities=18% Similarity=0.244 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 276 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
+..++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++. ..|++++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~ 60 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY---------------------AQGKYADAAK 60 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH---------------------hhccHHHHHH
Confidence 4678999999999999999999999999999876 456777777776 9999999999
Q ss_pred HHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 353 CLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 353 ~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
.|++++..+|++ +.++..+|.++...|++++|+.+++++++..|++..+.
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 999999998884 67899999999999999999999999999999986543
No 137
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.14 E-value=1.6e-10 Score=84.77 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+|+++.|+..|+++++.+|. +...++.+|.++++.|+|++|+..+++ ...++.+...++.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57889999999999999995 566788899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q 009045 299 FQDL 302 (546)
Q Consensus 299 ~~~a 302 (546)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 138
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.13 E-value=4.5e-09 Score=86.63 Aligned_cols=105 Identities=22% Similarity=0.282 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+..++.+|..|-..|-+.-|.-.|.+++.+.|+.+.++..+|..+...|+|+.|.+.|...++++|.+.-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 45677788888888888888888888888888888888888888888888888888888888888888887777777666
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
+ --|+++-|.+.+.+-.+.+|+++-
T Consensus 144 Y---------------------Y~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 144 Y---------------------YGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred e---------------------ecCchHhhHHHHHHHHhcCCCChH
Confidence 5 667888888888888888887664
No 139
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.13 E-value=2.1e-08 Score=87.26 Aligned_cols=186 Identities=19% Similarity=0.185 Sum_probs=120.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALI 314 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 314 (546)
.+..++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..|++.++..|+++. +++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35677888888888888888888888888877754 467888888888888888888888888888887653 333
Q ss_pred HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
.+|.++. .. ....+ ......+...+|+..|+..+..
T Consensus 84 ~~g~~~~---------------------~~---------~~~~~--------------~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 84 MLGLSYY---------------------KQ---------IPGIL--------------RSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp HHHHHHH---------------------HH---------HHHHH---------------TT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------Hh---------Cccch--------------hcccChHHHHHHHHHHHHHHHH
Confidence 3333332 11 00000 2233445667899999999999
Q ss_pred CCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc
Q 009045 395 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 474 (546)
Q Consensus 395 ~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 474 (546)
.|++..+...... +. .+...
T Consensus 120 yP~S~y~~~A~~~--l~----------------------------------~l~~~------------------------ 139 (203)
T PF13525_consen 120 YPNSEYAEEAKKR--LA----------------------------------ELRNR------------------------ 139 (203)
T ss_dssp -TTSTTHHHHHHH--HH----------------------------------HHHHH------------------------
T ss_pred CcCchHHHHHHHH--HH----------------------------------HHHHH------------------------
Confidence 9998654322111 00 00000
Q ss_pred hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHH
Q 009045 475 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSG 531 (546)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~ 531 (546)
-..--+.+|..|.+.|.|..|+..++.+++..|+. .+++..++.+|.++|..+.|.
T Consensus 140 -la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 140 -LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 11112346668999999999999999999999987 567899999999999988554
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.13 E-value=2.9e-10 Score=80.03 Aligned_cols=66 Identities=26% Similarity=0.182 Sum_probs=61.9
Q ss_pred hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHhc
Q 009045 477 ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG-DHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~ 542 (546)
...|+.+|.++...|++++|+.+|+++++++|+++.+|+++|.++..+| ++++|+.+|++++++-|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4578889999999999999999999999999999999999999999999 79999999999998754
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.11 E-value=3e-09 Score=87.30 Aligned_cols=117 Identities=13% Similarity=0.088 Sum_probs=92.0
Q ss_pred ChhhHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 293 (546)
..++...+...+++.+..+|+. ..+.+.+|.+++..|++++|+..|++++...|+. ..+.+.+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3456688888888999888887 5578889999999999999999999999987655 457888999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
+|+..++.. .-.+-.+..+..+|. ++...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gd---------------------i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGD---------------------IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHH---------------------HHHHCCCHHHHHHHHHHhC
Confidence 999999662 222223334444444 4449999999999999874
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.10 E-value=4.3e-10 Score=78.02 Aligned_cols=65 Identities=22% Similarity=0.394 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999874
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.10 E-value=5.9e-09 Score=102.96 Aligned_cols=143 Identities=16% Similarity=0.156 Sum_probs=116.1
Q ss_pred CcccHHH--HHHHHHHHHHcCC---hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHh
Q 009045 238 DTRQAVV--WNTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--------DMEQSAKCFQDLIL 304 (546)
Q Consensus 238 ~p~~~~~--~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~ 304 (546)
.|.+..+ ++..|.-+...++ +..|+.+|+++++++|+++.++..++.+|.... +...+.+..++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3455444 4567777766554 889999999999999999999999988876542 24456666667666
Q ss_pred h--CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 009045 305 K--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 305 ~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 382 (546)
+ +|.++.++..++.... ..|++++|...+++++.++| +..+|..+|.++...|+++
T Consensus 413 l~~~~~~~~~~~ala~~~~---------------------~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 413 LPELNVLPRIYEILAVQAL---------------------VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred cccCcCChHHHHHHHHHHH---------------------hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHH
Confidence 4 6667777777777666 77999999999999999999 5889999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHH
Q 009045 383 SSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~ 402 (546)
+|+..|++++.++|.++..+
T Consensus 471 eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 471 LAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred HHHHHHHHHHhcCCCCchHH
Confidence 99999999999999988543
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.09 E-value=1.7e-09 Score=82.13 Aligned_cols=99 Identities=24% Similarity=0.370 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 323 (546)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|++++...|.+...+..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY-- 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH--
Confidence 567888999999999999999999999999888889999999999999999999999999998888878888877776
Q ss_pred hCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 324 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
..|++++|...+.++++..|.
T Consensus 80 -------------------~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 -------------------KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred -------------------HHHhHHHHHHHHHHHHccCCC
Confidence 788899999999998887763
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.09 E-value=8.5e-09 Score=84.65 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=98.6
Q ss_pred HcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhhCcc
Q 009045 254 KSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSV 327 (546)
Q Consensus 254 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~ 327 (546)
..++...+...+++.++.+|+. ..+.+.+|.+++..|++++|...|++++...|+.. .+.+.++.++.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~------ 96 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL------ 96 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH------
Confidence 6789999999999999999988 56788899999999999999999999999876542 23445555555
Q ss_pred ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
..|++++|+..++. +...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 97 ---------------~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 97 ---------------QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---------------HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999976 33344567788999999999999999999999875
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.09 E-value=1.9e-09 Score=81.84 Aligned_cols=99 Identities=30% Similarity=0.434 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHH
Q 009045 278 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 357 (546)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 357 (546)
+++.+|.++...|++++|+..++++++..|.+...+..++.++. ..+++++|+.+++++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~a~~~~~~~ 60 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY---------------------KLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999888888888887 789999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 358 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 358 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+...|.+..++..+|.++...|++++|...+.++++..|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999988773
No 147
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.08 E-value=2.4e-09 Score=97.79 Aligned_cols=155 Identities=22% Similarity=0.208 Sum_probs=92.5
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC--CHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--DMEQSA 296 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~ 296 (546)
...|++++|++.+.+. .+.++......++...++++.|.+.++.+-+.+.+..-.....+++.+..| .+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 3455666666666543 345555556666666777777777666666666555544444455555544 466666
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
..|++.....+..+..+..++.+++ .+|+|++|.+.+++++..+|.++.++.+++.+..
T Consensus 188 y~f~El~~~~~~t~~~lng~A~~~l---------------------~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 188 YIFEELSDKFGSTPKLLNGLAVCHL---------------------QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp HHHHHHHCCS--SHHHHHHHHHHHH---------------------HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 6776666555555555555555555 6677777777777777777777777777777766
Q ss_pred HcCCh-HHHHHHHHHHHhcCCCCh
Q 009045 377 LTGDH-RSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 377 ~~g~~-~~A~~~~~~al~~~p~~~ 399 (546)
.+|+. +.+.+++.+....+|+++
T Consensus 247 ~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HhCCChhHHHHHHHHHHHhCCCCh
Confidence 66666 445556666666666655
No 148
>PRK11906 transcriptional regulator; Provisional
Probab=99.08 E-value=8.2e-09 Score=96.49 Aligned_cols=153 Identities=12% Similarity=0.160 Sum_probs=129.8
Q ss_pred ChhhHHHHHHHHHHHH---hcCcccHHHHHHHHHHHHHc---------CChHHHHHHHHhhHhcCCCChHHHHHHHHHHH
Q 009045 220 EPEELEEILSKLKESM---QSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF 287 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 287 (546)
.....+.|+.+|.+++ .++|+.+.++..++.|++.. ....+|....+++++++|.++.++..+|.++.
T Consensus 270 t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 270 TPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG 349 (458)
T ss_pred CHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3456689999999999 99999999999999998765 24567889999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 288 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 288 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
..|+++.|+..|++++.++|+...+++..|.+.. ..|+.++|++.++++++++|....+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~---------------------~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF---------------------HNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHhccCchhhHH
Confidence 9999999999999999999999999999998887 8899999999999999999986554
Q ss_pred HHHHHHH-HHHcCChHHHHHHHHHHHh
Q 009045 368 WANLANA-YYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 368 ~~~l~~~-~~~~g~~~~A~~~~~~al~ 393 (546)
-...-.+ .+-....++|+..|-+-.+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 409 VVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 3333333 3445567888888765443
No 149
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=1.5e-08 Score=83.66 Aligned_cols=216 Identities=13% Similarity=0.058 Sum_probs=142.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 354 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 354 (546)
.+..++..|..|-.+|-+.-|.-.|.+++.+.|+-+.++..+|..+. ..|+++.|.+.|
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~---------------------~a~~fdaa~eaF 122 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT---------------------QAGNFDAAYEAF 122 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH---------------------hcccchHHHHHh
Confidence 35677888999999999999999999999999999999999998887 899999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHH
Q 009045 355 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL 434 (546)
Q Consensus 355 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 434 (546)
...++++|.+--++.+.|..++.-|++.-|.+.+.+-.+.+|+++.--..+- +.+.. .....+...+....
T Consensus 123 ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY---l~E~k------~dP~~A~tnL~qR~ 193 (297)
T COG4785 123 DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY---LNEQK------LDPKQAKTNLKQRA 193 (297)
T ss_pred hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH---HHHhh------CCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999874322221 11100 00111111111111
Q ss_pred hcCCCCCCCcHHHHHHHHHHHHhcccH--HHHHHHHHh------hccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHh
Q 009045 435 REGDPVQIEPPIAWAGFAAVQKTHHEV--AAAFETEEN------ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKA 506 (546)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~------~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 506 (546)
..... ..-.|...+ ...|++ +...+.... .+...-.++++.+|..+...|+.++|...|+-++..
T Consensus 194 ~~~d~----e~WG~~iV~---~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 194 EKSDK----EQWGWNIVE---FYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccH----hhhhHHHHH---HHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11111 011122211 122222 111111111 222334466778888888888888888888888775
Q ss_pred CCCCH----HHHHHHHHHHHhcCCh
Q 009045 507 DPKAA----HIWANLANAYYLTGDH 527 (546)
Q Consensus 507 ~p~~~----~~~~~lg~~~~~~g~~ 527 (546)
+--+- .+.+.|+.+.....+.
T Consensus 267 nVynfVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 267 NVYNFVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred hHHHHHHHHHHHHHHHHhccccchh
Confidence 54331 2334455554444333
No 150
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.1e-08 Score=93.12 Aligned_cols=129 Identities=21% Similarity=0.221 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
+......|+.|++.|+|..|...|++++........ .. .++....
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~--------------------------------~~---~ee~~~~ 252 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS--------------------------------FD---EEEQKKA 252 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc--------------------------------CC---HHHHHHH
Confidence 344567899999999999999999999886322100 00 0111110
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
. ++ -..++.+++.|+.++++|.+|+..+.++|.++|+|..+++..|.++..+|+++.|+..|++++++.|.|.
T Consensus 253 -~-~~-----k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 253 -E-AL-----KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred -H-HH-----HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 0 01 1357889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 009045 311 AALINYAALLL 321 (546)
Q Consensus 311 ~~~~~l~~~~~ 321 (546)
.+...+..+..
T Consensus 326 a~~~el~~l~~ 336 (397)
T KOG0543|consen 326 AARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHHH
Confidence 88888777665
No 151
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.06 E-value=1.3e-10 Score=102.14 Aligned_cols=229 Identities=15% Similarity=0.131 Sum_probs=120.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 280 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
...|.-|+++|.|++|+.+|.+++..+|.++..+.+.+..|+ +.+.|..|...+..++.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl---------------------k~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL---------------------KQKSFAQAEEDCEAAIA 159 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH---------------------HHHHHHHHHHhHHHHHH
Confidence 344555555555555555555555555555555555555555 55555555555555555
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHhhhccCchhHHHHHHHHHHHHHhcCC
Q 009045 360 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS-RIKDAERSQEPTEQLSWAGNEMASILREGD 438 (546)
Q Consensus 360 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (546)
++.....+|...+.+-..+|+..+|.+.++.++++.|++......++.. .+.+..-.......+..+.......+
T Consensus 160 Ld~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l---- 235 (536)
T KOG4648|consen 160 LDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQIL---- 235 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhc----
Confidence 5555556666666666666666666666666666666554433322211 00000000000000000000000000
Q ss_pred CCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHh-hHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009045 439 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGA-GESAFLDQASAVNVAKECLLAALKADPKAAHIWANL 517 (546)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 517 (546)
..-.-|..+...|.++.++..+.+.+......... .-+..+.+.-+++.++..+.+++..+|.........
T Consensus 236 --------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~ 307 (536)
T KOG4648|consen 236 --------PIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGP 307 (536)
T ss_pred --------cccCcchhhhhhhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCC
Confidence 01223445566667777777766644333222222 115577788888888888888888887766555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHh
Q 009045 518 ANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 518 g~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
|.+-.-.|...++...++.++.+-
T Consensus 308 ~~A~T~~~~~~E~K~~~~T~~~~~ 331 (536)
T KOG4648|consen 308 PKAETIAKTSKEVKPTKQTAVKVA 331 (536)
T ss_pred chhHHHHhhhhhcCcchhheeeec
Confidence 666666666667777776665543
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.05 E-value=2.8e-08 Score=91.59 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCC--C----ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDP--N----NCDCIGNLGIAYFQS-GDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
.+...+.++.+. ++++|+.+|++++.+.- + -..++..+|.+|... |++++|+++|++++.+....... ...
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~-~~a 154 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP-HSA 154 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H-HHH
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh-hhH
Confidence 444455555444 77788888887777521 1 145778899999998 99999999999999875433211 112
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC------CH-HHHHHHHHHHHHcCChHHHHHHHH
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AA-HIWANLANAYYLTGDHRSSGKCLE 389 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~-~~~~~l~~~~~~~g~~~~A~~~~~ 389 (546)
..++. .+|.++...|+|++|++.|++.....-+ +. ..++..+.|++..|++..|...++
T Consensus 155 ~~~~~--------------~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 155 AECLL--------------KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp HHHHH--------------HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHH--------------HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22222 2355666999999999999999875432 12 345678889999999999999999
Q ss_pred HHHhcCCCChhHHHHH
Q 009045 390 KAAKLEPNCMSTRYAV 405 (546)
Q Consensus 390 ~al~~~p~~~~~~~~l 405 (546)
+....+|......-..
T Consensus 221 ~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 221 RYCSQDPSFASSREYK 236 (282)
T ss_dssp HHGTTSTTSTTSHHHH
T ss_pred HHHhhCCCCCCcHHHH
Confidence 9999999776554433
No 153
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.05 E-value=5.2e-09 Score=88.55 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=99.0
Q ss_pred CChHHHHHHHHhhHhcCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhCccccc
Q 009045 256 GRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAG 330 (546)
Q Consensus 256 g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~ 330 (546)
+.|..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. ..++.++|.++.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~--------- 83 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT--------- 83 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH---------
Confidence 44666666666665555544 6778999999999999999999999999987763 346777777776
Q ss_pred cccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HcCChH-------HHHHHHHHHHhcCC
Q 009045 331 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY-------LTGDHR-------SSGKCLEKAAKLEP 396 (546)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-------~~g~~~-------~A~~~~~~al~~~p 396 (546)
..|++++|+..|++++.+.|.....+..+|.++. .+|+++ +|+.+|++++..+|
T Consensus 84 ------------~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 84 ------------SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred ------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 8999999999999999999999999999999988 777776 55666667777788
Q ss_pred CCh
Q 009045 397 NCM 399 (546)
Q Consensus 397 ~~~ 399 (546)
.+.
T Consensus 152 ~~~ 154 (168)
T CHL00033 152 GNY 154 (168)
T ss_pred ccH
Confidence 654
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.05 E-value=3.6e-09 Score=89.80 Aligned_cols=106 Identities=17% Similarity=0.255 Sum_probs=92.1
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHH
Q 009045 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN 348 (546)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (546)
++....+++.+|.++...|++++|+.+|+++++..|+.. ..+..+|.++. ..|+++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~ 89 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA---------------------SNGEHD 89 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH---------------------HcCCHH
Confidence 345677899999999999999999999999999877643 45666666666 999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCCC
Q 009045 349 VAKECLLAALKADPKAAHIWANLANAYYLTGD--------------HRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 349 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 398 (546)
+|+..+++++...|.+...+..+|.++...|+ +++|+.++++++..+|++
T Consensus 90 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 90 KALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999999999999999999999888 577888888888888876
No 155
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.04 E-value=4.7e-08 Score=101.13 Aligned_cols=221 Identities=15% Similarity=0.096 Sum_probs=184.2
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-hcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-LLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
..-++.|.+.+..+|+..-.|...-..+...++.++|.+.+++|+.. ++.. ..+.+..+.++.++-..| |
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE-----eeEKLNiWiA~lNlEn~y---G- 1511 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE-----EEEKLNIWIAYLNLENAY---G- 1511 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch-----hHHHHHHHHHHHhHHHhh---C-
Confidence 33456899999999999999999999999999999999999999975 2222 222333333344433332 3
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
.-+...+.|++|.+... -...+..|..+|...+.+++|.++|+..++...+...+|..+|..++.+.+-
T Consensus 1512 ----------~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1512 ----------TEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred ----------cHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH
Confidence 33778888888887643 3568888999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 293 EQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
+.|...+.+|++.-|. +.......+.+-+ +.|+.+.+...|+..+..+|...+.|.-
T Consensus 1581 ~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF---------------------k~GDaeRGRtlfEgll~ayPKRtDlW~V 1639 (1710)
T KOG1070|consen 1581 EAARELLKRALKSLPKQEHVEFISKFAQLEF---------------------KYGDAERGRTLFEGLLSAYPKRTDLWSV 1639 (1710)
T ss_pred HHHHHHHHHHHhhcchhhhHHHHHHHHHHHh---------------------hcCCchhhHHHHHHHHhhCccchhHHHH
Confidence 9999999999999998 5555555565555 9999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLE 395 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~ 395 (546)
....-...|+.+.+...|++++.+.
T Consensus 1640 Yid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1640 YIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999764
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=99.04 E-value=1.4e-08 Score=94.92 Aligned_cols=180 Identities=12% Similarity=0.110 Sum_probs=133.6
Q ss_pred HhCCCCH---HHH----HHHHHHHHHcCC---hhHHHHHHHHHH---HHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 145 RKMPKNA---HAH----FLLGLMYQRLGQ---PLKAVSSYEKAE---EILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 145 ~~~p~~~---~~~----~~lg~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
...|.+. ++| +.+|......+. .+.|+.+|.+++ .++|... ..+..++.++.... .+|
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a-----~a~~~lA~~h~~~~----~~g 312 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT-----ECYCLLAECHMSLA----LHG 312 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH-----HHHHHHHHHHHHHH----Hhc
Confidence 3345555 444 777777766654 568999999999 7755431 11111122221111 122
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 291 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 291 (546)
.. - ...+..+|.+..+++++++|.++.++..+|.++...++++.|+..|++++.++|+.+.+|+..|.+....|+
T Consensus 313 ~~----~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 313 KS----E-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred CC----C-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 22 1 467789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 292 MEQSAKCFQDLILKDQNHPAALINYAAL-LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 292 ~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
.++|++.++++++++|....+-...-.+ .+ -....+.|+..|-+-.+
T Consensus 388 ~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 388 IEEARICIDKSLQLEPRRRKAVVIKECVDMY---------------------VPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHH---------------------cCCchhhhHHHHhhccc
Confidence 9999999999999999876654332222 11 34457788887766443
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=99.03 E-value=8.9e-09 Score=82.48 Aligned_cols=108 Identities=11% Similarity=0.039 Sum_probs=90.7
Q ss_pred HhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 235 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 235 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
..+.++.-+..+..|.-++..|++++|...|+-+...+|.++..|..||.++..+++|++|+..|..+..++++++...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 34455666788888888899999999999999888889988999999999999999999999999999888888888888
Q ss_pred HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC
Q 009045 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364 (546)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 364 (546)
..|.+++ .+|+.+.|+.+|..++. .|.+
T Consensus 110 ~agqC~l---------------------~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 110 FTGQCQL---------------------LMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred hHHHHHH---------------------HhCCHHHHHHHHHHHHh-Ccch
Confidence 8877777 88888889888888888 3443
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.01 E-value=2e-08 Score=99.31 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=108.4
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--------ChHHHHHHHHhhHhc--CCCChHHHHHHHHHHHHc
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG--------RLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQS 289 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 289 (546)
..+++..|+.+|+++++.+|+++.++..++.++.... +...+.....+++.+ +|..+.++..+|..+...
T Consensus 354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 354 DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 4567899999999999999999999999988876642 344566667776664 777788999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 290 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
|++++|...+++++.++| +..++..+|.++. ..|++++|++.|++++.++|..+..
T Consensus 434 g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~---------------------~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE---------------------LKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999999 4778888888887 8999999999999999999997753
No 159
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.1e-08 Score=93.16 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
......|..|++.|+|..|...|++++..-... ..++.+++.++.++++|.+|+....++|.++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 345567999999999999999999988763211 24677788888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH-HH
Q 009045 308 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS-GK 386 (546)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~ 386 (546)
+|..+++..|.++. ..|+++.|+..|++++++.|.|-.+...+..+-.+..++.+. .+
T Consensus 289 ~N~KALyRrG~A~l---------------------~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 289 NNVKALYRRGQALL---------------------ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred CchhHHHHHHHHHH---------------------hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777 777788888888888888888877777777777666665544 66
Q ss_pred HHHHHHhcCC
Q 009045 387 CLEKAAKLEP 396 (546)
Q Consensus 387 ~~~~al~~~p 396 (546)
.|.+++..-+
T Consensus 348 ~y~~mF~k~~ 357 (397)
T KOG0543|consen 348 MYANMFAKLA 357 (397)
T ss_pred HHHHHhhccc
Confidence 6777766544
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.01 E-value=1.5e-09 Score=75.30 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=58.3
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 482 GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+.+|++++++.|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 567899999999999999999999999999999999999999999999999999999988764
No 161
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.99 E-value=2.9e-08 Score=88.36 Aligned_cols=245 Identities=14% Similarity=0.061 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
-...-|.-++...++.+|+..+.+.+..-.+. ...+-.+..+...+|.|++++.+--..+....+..+....
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~----- 82 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFL----- 82 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 34456666778888888888888887754332 3345556677788888888776654444332221111111
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-----AHIWANLANAYYLTGDHRSSGKCLEKAAKLE 395 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 395 (546)
...+.+++..+.+..++.+++.+....+.+.... ......+|.++..++.++++++.|+++++..
T Consensus 83 ----------~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A 152 (518)
T KOG1941|consen 83 ----------LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYA 152 (518)
T ss_pred ----------HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 1111223444457788888888888877763322 3566778999999999999999999999886
Q ss_pred CCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--
Q 009045 396 PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS-- 473 (546)
Q Consensus 396 p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-- 473 (546)
.++.+....+ .++..+|..+....++++|..+..++.+
T Consensus 153 ~~~~D~~LEl----------------------------------------qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 153 HNNDDAMLEL----------------------------------------QVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred hccCCceeee----------------------------------------ehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 6554333211 3577788888888888888877666433
Q ss_pred ------c----hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009045 474 ------K----MEECAGAGESAFLDQASAVNVAKECLLAALKAD------PKAAHIWANLANAYYLTGDHRSSGKCLEKV 537 (546)
Q Consensus 474 ------~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (546)
. ....++|.++..+...|+.-+|.++++++.++. +-.......+|.+|...|+.+.|..-|+.|
T Consensus 193 ~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 193 NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1 112457789999999999999999999998763 223556678999999999999999999999
Q ss_pred HHHhcc
Q 009045 538 LMVYCS 543 (546)
Q Consensus 538 l~~~~~ 543 (546)
+..+.+
T Consensus 273 m~~m~~ 278 (518)
T KOG1941|consen 273 MGTMAS 278 (518)
T ss_pred HHHHhh
Confidence 887754
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.98 E-value=1.3e-08 Score=91.27 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=87.4
Q ss_pred cChhhHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC---ChHHHHHHHHHHHHcCCH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---NCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~ 292 (546)
+..|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++.+|.++..+|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 35678899999999999999988 579999999999999999999999999998776 478999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~ 313 (546)
++|+..|+++++..|+...+.
T Consensus 234 ~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999987554
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.98 E-value=1.6e-09 Score=79.51 Aligned_cols=82 Identities=28% Similarity=0.403 Sum_probs=71.8
Q ss_pred HcCChHHHHHHHHhhHhcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccccc
Q 009045 254 KSGRLQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 331 (546)
Q Consensus 254 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 331 (546)
.+|+|+.|+..|+++++.+|. +...++.+|.+|+..|++++|+..+++ .+.++.+....+.+|.++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~---------- 69 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLL---------- 69 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHH----------
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHH----------
Confidence 368999999999999999995 467788899999999999999999999 8888888888887788877
Q ss_pred ccccccchHHHhhcCHHHHHHHHHHH
Q 009045 332 GANTGEGACLDQASAVNVAKECLLAA 357 (546)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~A~~~~~~a 357 (546)
++|++++|++.|+++
T Consensus 70 -----------~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 -----------KLGKYEEAIKALEKA 84 (84)
T ss_dssp -----------HTT-HHHHHHHHHHH
T ss_pred -----------HhCCHHHHHHHHhcC
Confidence 999999999999875
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.98 E-value=9.3e-07 Score=80.22 Aligned_cols=222 Identities=26% Similarity=0.234 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCChHHHHHHHHhhHh--cCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
+.+..+...+...+...+. ........+..+...+++..++..+...+. ..+.....+..++..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4557788888888887776 377888899999999999999999999987 688888999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHH-HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC---CCHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAA-LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP---KAAHIWANLAN 373 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~ 373 (546)
.+..++...+........... ++. ..|+++.|+..+.+++...| .....+...+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALY---------------------ELGDYEEALELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence 999999987776444444443 343 88999999999999988776 45666777777
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
.+...++++.|+..+.+++...+.. ....+..++.
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~ 210 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDD---------------------------------------------DAEALLNLGL 210 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccc---------------------------------------------chHHHHHhhH
Confidence 7888999999999999999988874 1134555666
Q ss_pred HHHhcccHHHHHHHHHhhccchh--hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 009045 454 VQKTHHEVAAAFETEENELSKME--ECAGAGESAFLDQASAVNVAKECLLAALKADPK 509 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 509 (546)
.+...+++..++..+...+...+ ...+..++..+...+.++++...+.+++...|.
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 66666677777777776555443 345556666666666688888888888887776
No 165
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.95 E-value=8.3e-10 Score=97.15 Aligned_cols=179 Identities=9% Similarity=-0.003 Sum_probs=131.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
|+++|.|++|+.+|.+++..+|.++..+.+++.+|+++.+|..|...+..++.++.....+|...|.+-..+|+..+|.+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccc---------c-----ccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVL---------A-----GAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
.++.+|.+.|++.+..-.++.+-.-+..... + +....-..|..+...|.++.++.++-+-+..+..
T Consensus 187 D~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~ 266 (536)
T KOG4648|consen 187 DCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDD 266 (536)
T ss_pred hHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCc
Confidence 9999999999988776555544321111100 0 0111112355555666666666666655544444
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 364 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+.....+ +..|....+++.++...-+++..+|.
T Consensus 267 ~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s 299 (536)
T KOG4648|consen 267 SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPT 299 (536)
T ss_pred cccCccc-HHHHHHHhhcchhHHHHHHhcCCCCC
Confidence 3333333 45555555666666555555555443
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.94 E-value=4e-08 Score=88.09 Aligned_cols=107 Identities=14% Similarity=0.182 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHH-HHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHH
Q 009045 241 QAVVWNTLGLIL-LKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAAL 313 (546)
Q Consensus 241 ~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 313 (546)
+...++..|..+ +..|+|++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|+++++..|++ ++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 356777777766 56799999999999999999988 5799999999999999999999999999988875 5667
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
+.+|.++. ..|++++|+..|+++++..|+...+.
T Consensus 221 ~klg~~~~---------------------~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 221 FKVGVIMQ---------------------DKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 77777776 89999999999999999999976543
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=98.94 E-value=1.4e-08 Score=81.40 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=99.4
Q ss_pred hHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCH
Q 009045 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 347 (546)
Q Consensus 268 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (546)
+..+.++..+..+..|.-++..|++++|...|+-....+|.+...+..||.++. ..++|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q---------------------~~k~y 87 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ---------------------LKKQF 87 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH---------------------HHHHH
Confidence 334556667888999999999999999999999999999999999999988887 88999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 348 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 348 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
++|+..|..+..++++++...+..|.||+.+|+.+.|+.+|+.++. .|.+
T Consensus 88 ~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 88 QKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 9999999999999999999999999999999999999999999998 4543
No 168
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.92 E-value=4.4e-08 Score=92.41 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=109.2
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcc
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 327 (546)
+-.++...++++.|+..|++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl------ 245 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL------ 245 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------
Confidence 445566678999999999999988865 66779999999999999999999999999999888887777777
Q ss_pred ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
..++++.|+...+++++..|.+...|..|+.+|..+|+++.|+..++.+--
T Consensus 246 ---------------~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 ---------------SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred ---------------hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 889999999999999999999999999999999999999999988875543
No 169
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.89 E-value=6.3e-08 Score=74.92 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN---HPAALINY 316 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 316 (546)
.+++.+|.++-..|+.++|+..|++++...... ..++..+|..+..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467778888888888888888888888764433 457778888888888888888888888877776 44555555
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
+.++. ..|++++|+..+-.++.
T Consensus 82 Al~L~---------------------~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALY---------------------NLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHH---------------------HCCCHHHHHHHHHHHHH
Confidence 55554 77788888877776664
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.86 E-value=7.2e-08 Score=88.84 Aligned_cols=151 Identities=19% Similarity=0.075 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccC
Q 009045 346 AVNVAKECLLAALKADPK------AAHIWANLANAYYLT-GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQE 418 (546)
Q Consensus 346 ~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~ 418 (546)
++++|+.+|++++.+.-. -..++..+|.+|... |++++|+.+|++++.+..........
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a-------------- 154 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA-------------- 154 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH--------------
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH--------------
Confidence 677777777777665211 256778899999998 99999999999999875443321111
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc--------hhh-hHHhhHHHHHHH
Q 009045 419 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK--------MEE-CAGAGESAFLDQ 489 (546)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~la~~~~~ 489 (546)
...+..++.++...|+|++|+..|.+.... ... ..++..+.|++.
T Consensus 155 --------------------------~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 155 --------------------------AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --------------------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 135678889999999999999999884331 111 334577779999
Q ss_pred hccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH--hcCChHHHHHHHHH
Q 009045 490 ASAVNVAKECLLAALKADPKA-----AHIWANLANAYY--LTGDHRSSGKCLEK 536 (546)
Q Consensus 490 ~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~--~~g~~~~A~~~~~~ 536 (546)
.|++..|...+++....+|.. ......|-.++. ....+..|+.-|.+
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 999999999999999998854 334444444543 23345555555543
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.86 E-value=6.8e-09 Score=72.77 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=47.4
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI 284 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 284 (546)
..|++++|+..|++++..+|++..+++.+|.+|+..|++++|...+++++..+|+++.++..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 45677777777777777777777777777777777777777777777777777777666665554
No 172
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.84 E-value=9.4e-07 Score=76.23 Aligned_cols=177 Identities=17% Similarity=0.164 Sum_probs=134.2
Q ss_pred cChhhHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHc---
Q 009045 219 LEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQS--- 289 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~--- 289 (546)
++.|++++|++.|+.+....|.. ..+...++.++++.+++++|+..+++-+.+.|.++ .+++..|.+++..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 57899999999999999988765 56899999999999999999999999999988764 4677888887653
Q ss_pred -----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-
Q 009045 290 -----GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK- 363 (546)
Q Consensus 290 -----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 363 (546)
.-..+|+..|+..+...|+..-+-.....+-... ...+..-+.+|..|.+.|.+-.|+.-++.+++..|+
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~----d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLN----DALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH----HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 2245788889999999998754322222111100 001233456789999999999999999999999777
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 364 --AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 364 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
..+++..+..+|..+|-.++|...-.-.-.-.|++.
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 356788889999999999999776544434445443
No 173
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.82 E-value=2.6e-06 Score=77.29 Aligned_cols=220 Identities=25% Similarity=0.280 Sum_probs=176.8
Q ss_pred hHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--hcccchhccchhhHHHHHHHhhccccccc
Q 009045 134 SREEKGLVHVARKMPK--NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI--LLRCEADIARPELLSLVQIHHAQCLLPES 209 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (546)
..+...+...+...+. ........+..+...+.+..+...+...+.. .+.. ...+...+..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-- 105 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL------------AEALLNLGLLL-- 105 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch------------HHHHHHHHHHH--
Confidence 3444556666666665 4788899999999999999999999998863 2111 12222233222
Q ss_pred cCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHcCChHHHHHHHHhhHhcCC---CChHHHHHHHHH
Q 009045 210 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGL-ILLKSGRLQSSISVLSSLLAVDP---NNCDCIGNLGIA 285 (546)
Q Consensus 210 ~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~ 285 (546)
...+++..++..+.+++...+.........+. ++...|+++.|+..|.+++...| .....+...+..
T Consensus 106 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (291)
T COG0457 106 ---------EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL 176 (291)
T ss_pred ---------HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH
Confidence 34455799999999999988877666666666 89999999999999999988777 456677777778
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 364 (546)
+...++++.|+..+.+++...+. ....+..++..+. ..+++..|+..+..++...|..
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL---------------------KLGKYEEALEYYEKALELDPDN 235 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH---------------------HcccHHHHHHHHHHHHhhCccc
Confidence 88999999999999999999998 5777777777776 7789999999999999999987
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
...+..++..+...+.++++...+.+++...|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 788888888888888899999999999999997
No 174
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=7e-07 Score=92.82 Aligned_cols=253 Identities=11% Similarity=0.056 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-CCCC----hHHHHHHHHHHHHcCCHHHHHHH
Q 009045 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNN----CDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
-.+..+.|++.+..+|+....|...-..+.+.++.++|.+.+++||.. ++.. ..+|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 355677888889999999999999888899999999999999999874 3322 34555555555566777788888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 378 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 378 (546)
|++|-+... ....+..|..+|. ..+.+++|.++|+..++...+....|..+|..++..
T Consensus 1520 FeRAcqycd-~~~V~~~L~~iy~---------------------k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYE---------------------KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHH---------------------HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 888887643 2344555655555 888999999999999999888899999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhc
Q 009045 379 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH 458 (546)
Q Consensus 379 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (546)
.+-++|...+.+|++.-|.... .......+++.++.
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eH--------------------------------------------v~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEH--------------------------------------------VEFISKFAQLEFKY 1613 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhh--------------------------------------------HHHHHHHHHHHhhc
Confidence 9999999999999999887321 12344556667778
Q ss_pred ccHHHHHHHHHhhccch--hhhHHhhHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc-CChHHHHHH
Q 009045 459 HEVAAAFETEENELSKM--EECAGAGESAFLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYYLT-GDHRSSGKC 533 (546)
Q Consensus 459 ~~~~~A~~~~~~~l~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~-g~~~~A~~~ 533 (546)
|+.+.+...+...+... ..+.|.-....-.+.|+.+.+...|++++.+ .|.....+|..=.-|.+. |+-+.....
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 88888888887766544 4567876666677788889999999999886 455666666666666544 665555555
Q ss_pred HHHHHHHhc
Q 009045 534 LEKVLMVYC 542 (546)
Q Consensus 534 ~~~al~~~~ 542 (546)
=.+|++...
T Consensus 1694 KarA~EYv~ 1702 (1710)
T KOG1070|consen 1694 KARAKEYVE 1702 (1710)
T ss_pred HHHHHHHHH
Confidence 566766553
No 175
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=3.9e-08 Score=80.11 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=92.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
++..|+|++|..-|..+|...|.. ..+|.+.|.++++++.++.|+..+.++|+++|.+..++...|.+|.++..|
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 578899999999999999999865 347888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
++|++.|.+++..+|....+.-....
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 99999999999999998876654443
No 176
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.80 E-value=8.7e-06 Score=81.49 Aligned_cols=236 Identities=13% Similarity=0.114 Sum_probs=150.8
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.+..+++.+|+..+.+.++..|+...+....|.++.++|+.++|..+++..-...+++-..+-.+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 56788888888888888888888888888888888888888888877777666677777778888888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI-WANLANAYY 376 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~ 376 (546)
+|+++.+.+|. .+....+-.+|. +.+.|.+-.+.--+..+..|.++-. |..+..+..
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayv---------------------R~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYV---------------------REKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 88888888887 555555555555 5555555444444444556665543 333333333
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Q 009045 377 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQK 456 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (546)
.....+.... .....++. ..+...+... . ......=....-.++.
T Consensus 157 s~~~~~~~~~-------------~i~l~LA~--------------------~m~~~~l~~~-g-k~~s~aE~~Lyl~iL~ 201 (932)
T KOG2053|consen 157 SIFSENELLD-------------PILLALAE--------------------KMVQKLLEKK-G-KIESEAEIILYLLILE 201 (932)
T ss_pred hccCCccccc-------------chhHHHHH--------------------HHHHHHhccC-C-ccchHHHHHHHHHHHH
Confidence 3322222211 11112211 1112222222 1 1111111223345667
Q ss_pred hcccHHHHHHHHHhhcc----chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 009045 457 THHEVAAAFETEENELS----KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 510 (546)
Q Consensus 457 ~~~~~~~A~~~~~~~l~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 510 (546)
.+|++++|...+...+. +.+..........+...++|.+-.+...+.+..++++
T Consensus 202 ~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 202 LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 78899999999865333 2222223345567888999999999999999999987
No 177
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.80 E-value=4.4e-05 Score=69.32 Aligned_cols=295 Identities=18% Similarity=0.120 Sum_probs=194.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHh
Q 009045 157 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 236 (546)
Q Consensus 157 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~ 236 (546)
-|.+-.-.|+-..|.+.-.++-++...+ .+-+..+..... .+-.|+++.|.+-|+.++.
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssD-----qepLIhlLeAQa----------------al~eG~~~~Ar~kfeAMl~ 148 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSD-----QEPLIHLLEAQA----------------ALLEGDYEDARKKFEAMLD 148 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhcc-----chHHHHHHHHHH----------------HHhcCchHHHHHHHHHHhc
Confidence 3555666788888888888877554322 222332222222 2346888999999998874
Q ss_pred cCcccHHHHHHHHH--HHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HH
Q 009045 237 SDTRQAVVWNTLGL--ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA-AL 313 (546)
Q Consensus 237 ~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~ 313 (546)
+|+. ..+-..|. --.+.|..+.|+.+-.++-...|.-..++...-......|+|+.|++..+......--... +-
T Consensus 149 -dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae 226 (531)
T COG3898 149 -DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE 226 (531)
T ss_pred -ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH
Confidence 4432 22222222 2356899999999999999999999999988888889999999999999877643211111 11
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
...+.++..+ +.. .-.-+...|...-.+++++.|+....-..-+..++..|+..++-..++.+.+
T Consensus 227 R~rAvLLtAk--------------A~s-~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 227 RSRAVLLTAK--------------AMS-LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHHHHHH--------------HHH-HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 1222222211 000 1234578899999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHH---Hh
Q 009045 394 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE---EN 470 (546)
Q Consensus 394 ~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~---~~ 470 (546)
..|.-..+. ... +.+.|+.......- ..
T Consensus 292 ~ePHP~ia~-lY~------------------------------------------------~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 292 AEPHPDIAL-LYV------------------------------------------------RARSGDTALDRLKRAKKLE 322 (531)
T ss_pred cCCChHHHH-HHH------------------------------------------------HhcCCCcHHHHHHHHHHHH
Confidence 998632211 110 11111111110000 11
Q ss_pred hccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 009045 471 ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-GDHRSSGKCLEKVLM 539 (546)
Q Consensus 471 ~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~ 539 (546)
.+++++....+..+..-+..|++..|..--+.+....|.. .++..|+.+-... |+-.++..++-+++.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4455566666666677777788888888778777777753 4666777776544 888888888777764
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.79 E-value=1.7e-08 Score=70.68 Aligned_cols=67 Identities=24% Similarity=0.412 Sum_probs=60.6
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
++..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3678999999999999999999999999999999999999999999999999999998777665543
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.78 E-value=2.6e-07 Score=71.46 Aligned_cols=97 Identities=23% Similarity=0.159 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 276 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
+.+++.+|.++-.+|+.++|+..|++++...... ..+++.++..+. .+|++++|+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr---------------------~LG~~deA~~ 59 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR---------------------NLGRYDEALA 59 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH---------------------HcCCHHHHHH
Confidence 3578999999999999999999999999975544 345666666665 9999999999
Q ss_pred HHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 353 CLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 353 ~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
.+++++...|+ +..+...++.++...|++++|+..+-.++.
T Consensus 60 ~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 60 LLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999888 888889999999999999999999988775
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.78 E-value=4.2e-08 Score=69.83 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=55.8
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
..+|...++|++|++++++++.++|+++..+..+|.++..+|++.+|+..|+++++..|++.......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 46778888888888888888888888888888888888888888888888888888888877665433
No 181
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=8.9e-06 Score=80.46 Aligned_cols=296 Identities=13% Similarity=0.053 Sum_probs=163.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHH
Q 009045 156 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 235 (546)
Q Consensus 156 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al 235 (546)
..|.+...+|..++|...|++.-..+ ++ +. + |...|.+++|.+..+.--
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D-----------Ll------NK---l-----------yQs~g~w~eA~eiAE~~D 853 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD-----------LL------NK---L-----------YQSQGMWSEAFEIAETKD 853 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-----------HH------HH---H-----------HHhcccHHHHHHHHhhcc
Confidence 34556667777788888777765432 10 00 0 334566677766554322
Q ss_pred hcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhH----------hcCC----------CChHHHHHHHHHHHHcCCHHHH
Q 009045 236 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL----------AVDP----------NNCDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 236 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------~~~p----------~~~~~~~~la~~~~~~g~~~~A 295 (546)
++. --..|++.+.-+...++.+.|+++|+++- .-+| .+...|...|......|+.+.|
T Consensus 854 RiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 854 RIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred cee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 222 23467777777777788888888887651 1122 2334555666666677777777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 375 (546)
+.+|..+-. |+.+.. +..-+|+.++|-...++ ..+..+.+.+|+.|
T Consensus 932 l~~Y~~A~D--------~fs~Vr---------------------I~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 932 LSFYSSAKD--------YFSMVR---------------------IKCIQGKTDKAARIAEE-----SGDKAACYHLARMY 977 (1416)
T ss_pred HHHHHHhhh--------hhhhee---------------------eEeeccCchHHHHHHHh-----cccHHHHHHHHHHh
Confidence 777766532 222222 22256667766655443 45677888999999
Q ss_pred HHcCChHHHHHHHHHHHhc------CCCC--hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHH
Q 009045 376 YLTGDHRSSGKCLEKAAKL------EPNC--MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 447 (546)
Q Consensus 376 ~~~g~~~~A~~~~~~al~~------~p~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (546)
...|++.+|+..|.++-.. ...+ .+-+.+++...-. ..+.. ....+.+. +..
T Consensus 978 En~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~---------~d~v~----aArYyEe~-------g~~ 1037 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGG---------SDLVS----AARYYEEL-------GGY 1037 (1416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCc---------hhHHH----HHHHHHHc-------chh
Confidence 9999999999988876433 2221 1122222221000 00000 00011110 001
Q ss_pred HHHHHHHHHhcccHHHHHHH------------HHhhccch-hhhHHhhHHHHHHHhccHHHHHHHHH------HHHHh--
Q 009045 448 WAGFAAVQKTHHEVAAAFET------------EENELSKM-EECAGAGESAFLDQASAVNVAKECLL------AALKA-- 506 (546)
Q Consensus 448 ~~~l~~~~~~~~~~~~A~~~------------~~~~l~~~-~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~-- 506 (546)
......+|.+.|.+.+|++. ..+.+++. ++..+..-+..+....+|++|+..+- .|+++
T Consensus 1038 ~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1038 AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCK 1117 (1416)
T ss_pred hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12223445555555555443 22233322 33444456666777777777776543 33332
Q ss_pred --------------CCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009045 507 --------------DPK---------AAHIWANLANAYYLTGDHRSSGKCLEKVL 538 (546)
Q Consensus 507 --------------~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (546)
.|. ....+..+|.+..++|.|..|-+-|.+|=
T Consensus 1118 ~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1118 NRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred cCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 121 14578889999999999999998887763
No 182
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=9.6e-06 Score=69.78 Aligned_cols=244 Identities=14% Similarity=0.055 Sum_probs=163.8
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+-.|+|..++..-.+..... ........+.+.|..+|++..-+......- .....+...++.....-++.+.-+..
T Consensus 19 fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 44677888887777665443 667777888888888888877665544332 12244555566655555665555555
Q ss_pred HHHHHhhCCCCHH-HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 299 FQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 299 ~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
..+.+........ .+..++ |.++...|++++|++...+. .+.++...--.++.+
T Consensus 95 l~E~~a~~~~~sn~i~~l~a--------------------a~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLA--------------------AIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLK 149 (299)
T ss_pred HHHHHHhhccchhHHHHHHh--------------------hHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHH
Confidence 5444433222222 232222 22334889999999887763 345666666778889
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 457 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (546)
+.+++-|...++++.+++.+.... .++ .+|..++. .
T Consensus 150 ~~r~d~A~~~lk~mq~ided~tLt--QLA---------------------------------------~awv~la~---g 185 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDATLT--QLA---------------------------------------QAWVKLAT---G 185 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHHHH--HHH---------------------------------------HHHHHHhc---c
Confidence 999999999999998887653211 121 23333322 2
Q ss_pred cccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009045 458 HHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 535 (546)
Q Consensus 458 ~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (546)
.+++..|+-.|+..-+ +.......+.+.|.+.+|+|++|...++.++..++++++++.++-.+-...|...++..-+-
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 2357788888887555 33345667889999999999999999999999999999999999999999998866665443
No 183
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.73 E-value=3e-07 Score=86.89 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=105.5
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
.++++.|+..|++..+.+|+ +...++.++...++-.+|+..+.+++...|.+...+...+..+...++++.|+...+
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 46689999999999998875 566789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 301 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
++....|++...|..|+.+|. ..|+++.|+..++.+-
T Consensus 259 ~av~lsP~~f~~W~~La~~Yi---------------------~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 259 KAVELSPSEFETWYQLAECYI---------------------QLGDFENALLALNSCP 295 (395)
T ss_pred HHHHhCchhHHHHHHHHHHHH---------------------hcCCHHHHHHHHhcCc
Confidence 999999999999999999998 9999999998777543
No 184
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.71 E-value=3.9e-07 Score=79.42 Aligned_cols=97 Identities=14% Similarity=0.242 Sum_probs=88.7
Q ss_pred cChhhHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~ 292 (546)
+..|+|..|...|...++..|+. +.+++.||.+++.+|+|++|...|..+++..|+. +++++.+|.+...+|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 46678899999999999999976 6799999999999999999999999999987765 68899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALIN 315 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~ 315 (546)
++|...|+++++..|+...+...
T Consensus 232 d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 232 DEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999998877543
No 185
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=3e-07 Score=75.08 Aligned_cols=107 Identities=19% Similarity=0.116 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
+-.-|.-++..|+|.+|..-|..+|.+.|..+ ..|.+.|.+.++++.++.|+....++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44557788899999999999999999988653 3556667777777777777777777777777666666665655
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
|. +...+++|++.|.+.++.+|....+...+.
T Consensus 178 ye---------------------k~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 178 YE---------------------KMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HH---------------------hhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 55 556667777777777766666554444333
No 186
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.69 E-value=0.00059 Score=68.93 Aligned_cols=222 Identities=13% Similarity=0.013 Sum_probs=150.7
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
..+|...+.++++.+|+..-+...-|..+.++|+.++|..+++..-...+.+ ... ...+-.+
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D------~~t------Lq~l~~~------ 86 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD------DLT------LQFLQNV------ 86 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc------hHH------HHHHHHH------
Confidence 3677778888999999999999999999999999999997666544432221 111 1112222
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHH-HHHHHHHHHHcCC
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC-IGNLGIAYFQSGD 291 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~ 291 (546)
|.+.+++++|..+|++++..+|. .+.++.+-.+|.+.+.|.+=.+.--+..+..|+++.. |.-+..+......
T Consensus 87 -----y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 87 -----YRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred -----HHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccC
Confidence 34566779999999999999999 8888888889999888877666655666677776543 4444444433333
Q ss_pred HH---------HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH-HHh-
Q 009045 292 ME---------QSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA-ALK- 359 (546)
Q Consensus 292 ~~---------~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-al~- 359 (546)
.+ -|...+++.++.. +-...+ -+.+|. .++...|++++|.+.+.. ..+
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a---E~~Lyl-----------------~iL~~~~k~~eal~~l~~~la~~ 220 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLLEKKGKIESEA---EIILYL-----------------LILELQGKYQEALEFLAITLAEK 220 (932)
T ss_pred CcccccchhHHHHHHHHHHHhccCCccchHH---HHHHHH-----------------HHHHhcccHHHHHHHHHHHHHHh
Confidence 22 3555666666554 111111 111111 234478999999999943 233
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 360 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 360 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
..+.+...-......+...++|.+-.+...+.+...+++
T Consensus 221 l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 221 LTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 334455555566778888999999999999999999887
No 187
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=4.6e-06 Score=77.58 Aligned_cols=152 Identities=15% Similarity=0.185 Sum_probs=108.1
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhh-HhcCCC--------ChHHHHHHHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL-LAVDPN--------NCDCIGNLGIAYFQ 288 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~ 288 (546)
++...++..+....+.++.+..+.+.+++..+..++..|++.+|.+.+... +...|. ...+|.++|.+++.
T Consensus 216 llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~ 295 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ 295 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee
Confidence 345556666666666667677788889999999999999999999987654 222332 23467899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCc-----cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 289 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS-----VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 289 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
+|.|.-+..+|.++++. ......-| + +... ........++.|..+...|+.-.|.++|.+++.....
T Consensus 296 ~~~y~~~~~~F~kAL~N----~c~qL~~g--~--~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 296 LGCYQASSVLFLKALRN----SCSQLRNG--L--KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred hhhHHHHHHHHHHHHHH----HHHHHhcc--C--CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 99999999999999961 00000000 0 0000 0001222334455555999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 009045 364 AAHIWANLANAYYL 377 (546)
Q Consensus 364 ~~~~~~~l~~~~~~ 377 (546)
++..|..++.|++.
T Consensus 368 nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 368 NPRLWLRLAECCIM 381 (696)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999999874
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.67 E-value=1.5e-07 Score=66.99 Aligned_cols=67 Identities=25% Similarity=0.299 Sum_probs=61.7
Q ss_pred hHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 339 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 339 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
.++.+.+++++|++++++++.++|+++..|..+|.++..+|++.+|+..|+++++..|++.......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4566999999999999999999999999999999999999999999999999999999987665443
No 189
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.00017 Score=62.29 Aligned_cols=143 Identities=13% Similarity=0.081 Sum_probs=115.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
+......-|.+++..|++++|+....+. .+.++...-..++.++.+++-|.+.++++.+++.+ ..+..|+..+
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~aw 179 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAW 179 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHH
Confidence 3345666778899999999999988763 45667777778899999999999999999887654 3455566665
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
... ....+.+.+|.-+|+..-+..|..+......+.|++.+|+|++|...++.++..++++++
T Consensus 180 v~l-----------------a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 180 VKL-----------------ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred HHH-----------------hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 532 114456899999999999988888999999999999999999999999999999999987
Q ss_pred HHHHHHH
Q 009045 401 TRYAVAV 407 (546)
Q Consensus 401 ~~~~l~~ 407 (546)
.+.++..
T Consensus 243 tL~Nliv 249 (299)
T KOG3081|consen 243 TLANLIV 249 (299)
T ss_pred HHHHHHH
Confidence 7766644
No 190
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.65 E-value=3.8e-05 Score=66.51 Aligned_cols=173 Identities=17% Similarity=0.142 Sum_probs=123.0
Q ss_pred hhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH---HHHHHHHHHHhhhc
Q 009045 343 QASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR---YAVAVSRIKDAERS 416 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~l~~~~l~~~~~~ 416 (546)
+.|++++|+..|+.+....|. ...+...++.++++.+++++|+...++-+++.|.++.+- +..++..+......
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 899999999999999999887 457889999999999999999999999999999887654 45555555444444
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHH
Q 009045 417 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVA 496 (546)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A 496 (546)
.........+...+..++..-.... -.+.+-..+..+-.. -..--..+|..|.+.|.+..|
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~-Ya~dA~~~i~~~~d~------------------LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSR-YAPDAKARIVKLNDA------------------LAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHH------------------HHHHHHHHHHHHHHhcChHHH
Confidence 4445555556666666655533211 111111111111111 111123566789999999999
Q ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHH
Q 009045 497 KECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCL 534 (546)
Q Consensus 497 ~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~ 534 (546)
+..++.+++..|+. .+++..+..+|..+|-.++|...-
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999999987765 678888999999999999987763
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.63 E-value=6.4e-06 Score=66.71 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHh-cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA-VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
+.......+.+..-|. ..-.+.||..+...|++.+|...|++++. +.-+++..+..+++..+..+++..|...+++..
T Consensus 73 ~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 73 ERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 4444444455555565 34577899999999999999999999986 466788999999999999999999999999999
Q ss_pred hhCCCC--HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 009045 304 LKDQNH--PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 381 (546)
Q Consensus 304 ~~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 381 (546)
+.+|.. ++....++.++- ..|++.+|...|+.++...|+ +......+..+..+|+.
T Consensus 152 e~~pa~r~pd~~Ll~aR~la---------------------a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 152 EYNPAFRSPDGHLLFARTLA---------------------AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRL 209 (251)
T ss_pred hcCCccCCCCchHHHHHHHH---------------------hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcch
Confidence 988753 444555566555 899999999999999999987 67777889999999998
Q ss_pred HHHHHHHHHHHh
Q 009045 382 RSSGKCLEKAAK 393 (546)
Q Consensus 382 ~~A~~~~~~al~ 393 (546)
.+|...+....+
T Consensus 210 ~ea~aq~~~v~d 221 (251)
T COG4700 210 REANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHHHH
Confidence 888877766554
No 192
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.62 E-value=1.6e-06 Score=75.56 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAA 318 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~ 318 (546)
.+..|.-++..|+|..|...|..-++..|+. +.+++.||.+++.+|+++.|...|..+.+-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888999999999999999999999999976 6899999999999999999999999999987765 566777777
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
+.. .+|+.++|...|+++++..|+...+...
T Consensus 224 ~~~---------------------~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLG---------------------RLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHH---------------------HhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 776 8999999999999999999997766543
No 193
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.60 E-value=2.1e-07 Score=87.10 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=66.7
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC---IGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
.+|+++.+++++|.+|+..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999855 9999999999999999999999999973
No 194
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.60 E-value=1.4e-06 Score=68.43 Aligned_cols=95 Identities=17% Similarity=0.252 Sum_probs=84.7
Q ss_pred ccChhhHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHcCC
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGD 291 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~ 291 (546)
.++.|+|.+|++.|+.+....|.. ..+.+.+|.+|+..+++++|+..+++.++++|.++ .+++..|.+++.+..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 367899999999999999988854 56899999999999999999999999999999774 578999999998876
Q ss_pred ---------------HHHHHHHHHHHHhhCCCCHHH
Q 009045 292 ---------------MEQSAKCFQDLILKDQNHPAA 312 (546)
Q Consensus 292 ---------------~~~A~~~~~~al~~~p~~~~~ 312 (546)
..+|...|++.++..|+...+
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 889999999999999988754
No 195
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.59 E-value=8.7e-08 Score=69.18 Aligned_cols=68 Identities=22% Similarity=0.437 Sum_probs=58.6
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc----C---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV----D---PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
|+-..++.++|.+|..+|++++|+.+|++++++ . |....++.++|.++..+|++++|++++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 556788999999999999999999999999976 1 1236689999999999999999999999999763
No 196
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.58 E-value=1.3e-07 Score=68.35 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=55.3
Q ss_pred hhHHhhHHHHHHHhccHHHHHHHHHHHHHh---CC-C---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 477 ECAGAGESAFLDQASAVNVAKECLLAALKA---DP-K---AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
..++.++|.+|...|++++|+.+|++++++ .+ + .+.++.++|.++...|++++|+++|+++++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 345678888999999999999999999975 12 2 266889999999999999999999999999874
No 197
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.58 E-value=5.1e-07 Score=73.10 Aligned_cols=92 Identities=23% Similarity=0.291 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----------hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC--
Q 009045 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR----------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-- 291 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 291 (546)
|+.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|+.+|.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6899999999999999999999999999887643 5678888999999999999999999999987654
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHH
Q 009045 292 ---------MEQSAKCFQDLILKDQNHPAALIN 315 (546)
Q Consensus 292 ---------~~~A~~~~~~al~~~p~~~~~~~~ 315 (546)
|++|..+|+++...+|++...+..
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 788999999999999998755443
No 198
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.58 E-value=2.1e-06 Score=67.44 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=70.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALI 314 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 314 (546)
.+..++.-|...++.|+|++|++.|+.+....|.. ..+...+|.+|+..|++++|+..+++.++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 35678899999999999999999999999998754 578999999999999999999999999999998875 455
Q ss_pred HHHHHHH
Q 009045 315 NYAALLL 321 (546)
Q Consensus 315 ~l~~~~~ 321 (546)
..|.++.
T Consensus 89 ~~gL~~~ 95 (142)
T PF13512_consen 89 MRGLSYY 95 (142)
T ss_pred HHHHHHH
Confidence 5665554
No 199
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=6.5e-06 Score=81.36 Aligned_cols=246 Identities=12% Similarity=0.077 Sum_probs=168.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHh--------hHhc---CCCChHHHHHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS--------LLAV---DPNNCDCIGNLGIAY 286 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------al~~---~p~~~~~~~~la~~~ 286 (546)
|...|+.+.|.+..+-+- ...+|-+++....+..+.+-|.-++-. ++.. +|+ +.-...+.+.
T Consensus 738 yvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHH
Confidence 566777799887765432 346899999999999888888766532 2222 333 3334456777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 287 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
..+|..++|...|++.-+.+ .+-.+|. ..|.+++|.+..+.--.+. --.
T Consensus 811 ieLgMlEeA~~lYr~ckR~D--------LlNKlyQ---------------------s~g~w~eA~eiAE~~DRiH--Lr~ 859 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD--------LLNKLYQ---------------------SQGMWSEAFEIAETKDRIH--LRN 859 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH--------HHHHHHH---------------------hcccHHHHHHHHhhcccee--hhh
Confidence 89999999999999876532 2333343 7899999988776533222 245
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHH
Q 009045 367 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 446 (546)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (546)
.|++.+.-+...++.+.|+++|+++-...-+ ...+..... ..+...++.. .++.
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafe----v~rmL~e~p-----------------~~~e~Yv~~~-----~d~~ 913 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFE----VFRMLKEYP-----------------KQIEQYVRRK-----RDES 913 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHH----HHHHHHhCh-----------------HHHHHHHHhc-----cchH
Confidence 7888999999999999999999986321100 000000000 0111111211 2346
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 447 AWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 447 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
.|.-+|..+...|+.+.|+..|..+- -|+.+..+.+-+|+.++|-..-++ ..+-.+.|.||+.|...|+
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~------D~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAK------DYFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhh------hhhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHH
Confidence 78889999999999999999998643 356666677788888888776554 4677789999999999999
Q ss_pred hHHHHHHHHHHH
Q 009045 527 HRSSGKCLEKVL 538 (546)
Q Consensus 527 ~~~A~~~~~~al 538 (546)
..+|+..|.+|-
T Consensus 983 v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHHH
Confidence 999998887653
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.55 E-value=2.8e-07 Score=86.32 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=55.9
Q ss_pred cchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 473 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI---WANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 473 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
++.....++++|.+|...|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+|++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35555677788888888888888888888888888888754 888888888888888888888888886
No 201
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00032 Score=65.73 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 151 AHAHFLLGLMYQRLG--QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
..++.++|..+...| +...++++++..+.. .+...--++.+..+|.++ +.-..+++.|.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~---------~is~~veart~LqLg~lL----------~~yT~N~elAk 67 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQF---------QISFLVEARTHLQLGALL----------LRYTKNVELAK 67 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhcc---------CChHHHHHHHHHHHHHHH----------HHHhccHHHHH
Confidence 467788899999999 899999999998876 333334456666666655 33456689999
Q ss_pred HHHHHHHhcC---ccc----HHHHHHHHHHHHHcC-ChHHHHHHHHhhHhcCCCCh----HHHHHHHHHHHHcCCHHHHH
Q 009045 229 SKLKESMQSD---TRQ----AVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNC----DCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 229 ~~~~~al~~~---p~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~ 296 (546)
..++++..+. |.. .++...++.+|.... .+..|...+++++++....+ ...+.|+.++.-..++..|+
T Consensus 68 sHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~ 147 (629)
T KOG2300|consen 68 SHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSAL 147 (629)
T ss_pred HHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHH
Confidence 9999987653 332 346677899988877 88999999999999876654 35667888888888888887
Q ss_pred HHH
Q 009045 297 KCF 299 (546)
Q Consensus 297 ~~~ 299 (546)
+.+
T Consensus 148 elL 150 (629)
T KOG2300|consen 148 ELL 150 (629)
T ss_pred HHH
Confidence 764
No 202
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.48 E-value=2.2e-06 Score=64.77 Aligned_cols=92 Identities=15% Similarity=0.237 Sum_probs=82.8
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC----hHHHHHHHHHHHHcCCHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQ 294 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~ 294 (546)
.+.|+++.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+.+++++.... ..++...|.+|..+|+.+.
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 356778999999999999999999999999999999999999999999999985543 4678899999999999999
Q ss_pred HHHHHHHHHhhCCCCH
Q 009045 295 SAKCFQDLILKDQNHP 310 (546)
Q Consensus 295 A~~~~~~al~~~p~~~ 310 (546)
|...|+.+.++.....
T Consensus 134 AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 134 ARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHhHHHHHHhCCHHH
Confidence 9999999998875543
No 203
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.48 E-value=1.7e-06 Score=70.16 Aligned_cols=102 Identities=21% Similarity=0.195 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchH---HHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 292 MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC---LDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 292 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
|+.|.+.++.....+|.+.+.+++.|.+++.. +.. -.....+++|+.-|++++.++|+...++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLEL--------------Aqfk~g~es~~miedAisK~eeAL~I~P~~hdAl 72 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLEL--------------AQFKQGPESKKMIEDAISKFEEALKINPNKHDAL 72 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH--------------HHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH--------------HhccCcchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 67899999999999999999999999888743 111 1133568899999999999999999999
Q ss_pred HHHHHHHHHcCC-----------hHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 369 ANLANAYYLTGD-----------HRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 369 ~~l~~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
..+|.+|...+. |++|..+|+++...+|++...+..+..
T Consensus 73 w~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 73 WCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999987654 789999999999999999876665544
No 204
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=6.9e-05 Score=63.23 Aligned_cols=189 Identities=11% Similarity=0.083 Sum_probs=127.8
Q ss_pred HcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhc----C
Q 009045 163 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS----D 238 (546)
Q Consensus 163 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~----~ 238 (546)
-.+++++|.++|.++-... . -..+|..|=..|.++-+. +
T Consensus 26 g~~k~eeAadl~~~Aan~y-------------k------------------------laK~w~~AG~aflkaA~~h~k~~ 68 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANMY-------------K------------------------LAKNWSAAGDAFLKAADLHLKAG 68 (288)
T ss_pred CCcchHHHHHHHHHHHHHH-------------H------------------------HHHhHHHHHHHHHHHHHHHHhcC
Confidence 3458999999999987652 1 123334444444444322 1
Q ss_pred -cc-cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh------HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q 009045 239 -TR-QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNLGIAYFQS-GDMEQSAKCFQDLILKDQNH 309 (546)
Q Consensus 239 -p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 309 (546)
.+ -+..|...+.+|. .++..+|+.++++++++..+.. ..+..+|.+|..- .++++|+.+|+++-......
T Consensus 69 skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e 147 (288)
T KOG1586|consen 69 SKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE 147 (288)
T ss_pred CchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence 12 2445666666664 4599999999999999865443 3455788888764 89999999999998765433
Q ss_pred HH-HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCh
Q 009045 310 PA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-------HIWANLANAYYLTGDH 381 (546)
Q Consensus 310 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~ 381 (546)
.. +.-+...+- .+.+-...++|.+|+..|++.....-++. ..++.-|.|++-..+.
T Consensus 148 es~ssANKC~lK----------------vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~ 211 (288)
T KOG1586|consen 148 ESVSSANKCLLK----------------VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADE 211 (288)
T ss_pred hhhhhHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccH
Confidence 21 122222111 23444588999999999999887655543 2345567888888999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHH
Q 009045 382 RSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 382 ~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
-.+...+++..+++|.....+-..
T Consensus 212 v~a~~ALeky~~~dP~F~dsREck 235 (288)
T KOG1586|consen 212 VNAQRALEKYQELDPAFTDSRECK 235 (288)
T ss_pred HHHHHHHHHHHhcCCcccccHHHH
Confidence 999999999999999987766543
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.44 E-value=0.00011 Score=59.66 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=104.1
Q ss_pred HHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhhCccc
Q 009045 250 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL-KDQNHPAALINYAALLLCKYGSVL 328 (546)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~ 328 (546)
....+.=+.+.......+.+...|. ..-.+.||....++|++.+|...|++++. +..++...+..++...+
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf------- 135 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF------- 135 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-------
Confidence 3334444555666666666666676 45578899999999999999999999985 56677777888888777
Q ss_pred cccccccccchHHHhhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 329 AGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
..+++..|...+++..+.+|. .+.....+|.++...|++.+|...|+.++...|+.
T Consensus 136 --------------a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 136 --------------AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred --------------hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 889999999999999998886 67788889999999999999999999999998864
No 206
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.42 E-value=1.8e-05 Score=60.07 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA----ALINYAAL 319 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~ 319 (546)
.+-..|.++...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+..+++++++...... ++...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR--- 121 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR--- 121 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH---
Confidence 34456888889999999999999999999999999999999999999999999999999998655432 23334
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
|.+|...|+-+.|...|+.+-++...
T Consensus 122 ------------------g~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 122 ------------------GLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred ------------------HHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 44455899999999999988776443
No 207
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.39 E-value=0.00018 Score=72.87 Aligned_cols=291 Identities=14% Similarity=0.042 Sum_probs=186.2
Q ss_pred hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhc-----Cccc
Q 009045 167 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS-----DTRQ 241 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~ 241 (546)
..+|..+|+.+.+.. .......++.++...+.- ...|.+.|+.+|+.+.+. .-.+
T Consensus 228 ~~~a~~~~~~~a~~g--------------~~~a~~~~g~~y~~G~~g------~~~d~e~a~~~l~~aa~~~~~~a~~~~ 287 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--------------HSEAQYALGICYLAGTYG------VTQDLESAIEYLKLAAESFKKAATKGL 287 (552)
T ss_pred hhHHHHHHHHHHhhc--------------chHHHHHHHHHHhhcccc------ccccHHHHHHHHHHHHHHHHHHHhhcC
Confidence 467888888887762 122333444443322222 458899999999999761 1124
Q ss_pred HHHHHHHHHHHHHcC-----ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHH
Q 009045 242 AVVWNTLGLILLKSG-----RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 313 (546)
+.+.+.+|.+|.+.. ++..|+.+|.++-.. +++.+.+.+|.++..-. ++..|.++|..|.+. .+..+.
T Consensus 288 ~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~ 363 (552)
T KOG1550|consen 288 PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAI 363 (552)
T ss_pred CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHH
Confidence 557888999998853 678899999998876 45778889999987765 578999999998764 477888
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHH
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-GDHRSSGKCLEKAA 392 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al 392 (546)
+.++.++.. | .....+...|..+|.++.+.. ++.+...++..+..- +++..+...+....
T Consensus 364 ~~la~~y~~---------------G--~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 364 YRLALCYEL---------------G--LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHh---------------C--CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 899988873 2 124567899999999999887 455555565555433 77777776666555
Q ss_pred hcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc
Q 009045 393 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 472 (546)
Q Consensus 393 ~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 472 (546)
...-........... . ... ...... ....+...++..+.+..
T Consensus 425 ~~g~~~~q~~a~~l~--~-~~~-----------------------~~~~~~------------~~~~~~~~~~~~~~~a~ 466 (552)
T KOG1550|consen 425 ELGYEVAQSNAAYLL--D-QSE-----------------------EDLFSR------------GVISTLERAFSLYSRAA 466 (552)
T ss_pred HhhhhHHhhHHHHHH--H-hcc-----------------------cccccc------------ccccchhHHHHHHHHHH
Confidence 443332211110000 0 000 000000 00123344445555555
Q ss_pred cchhhhHHhhHHHHHHHh----ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHh
Q 009045 473 SKMEECAGAGESAFLDQA----SAVNVAKECLLAALKADPKAAHIWANLANAYYLT---GDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 473 ~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~ 541 (546)
...+..+...+|.+|... .+++.|...|.++.... +...+++|.++..- .....|..+|.++.+.-
T Consensus 467 ~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 467 AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 556666666677666654 34888888888887766 78888888888431 12678888888877643
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=8e-05 Score=64.02 Aligned_cols=148 Identities=22% Similarity=0.228 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
+..++.+++-+ ..+.+.+..++.-.|.|.-.+..+.++++.+ |..+.....||.+.++.|+.+.|..+|++.-
T Consensus 166 ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 166 ESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred hhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44555555543 3567778889999999999999999999998 6778889999999999999999999999665
Q ss_pred hhCC------CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 304 LKDQ------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 304 ~~~p------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
+... .+.....+.+.+ +.-.+++..|...|.+++..+|.++.+..+.+.|+..
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~i---------------------~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAFL---------------------HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHhhhhccchhHHHHhhhhhh---------------------eecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 3321 112223333333 3478899999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCh
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~ 399 (546)
.|+..+|++.++.++...|...
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999754
No 209
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.6e-06 Score=71.78 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=84.7
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
++....|..|+.+|.+++.++|..+..|.+.+.+|++..+|+.+....+++++++|+....++.+|........|++|+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 009045 298 CFQDLILK 305 (546)
Q Consensus 298 ~~~~al~~ 305 (546)
.+.++..+
T Consensus 100 ~Lqra~sl 107 (284)
T KOG4642|consen 100 VLQRAYSL 107 (284)
T ss_pred HHHHHHHH
Confidence 99999755
No 210
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.31 E-value=6.5e-07 Score=51.84 Aligned_cols=34 Identities=32% Similarity=0.528 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009045 499 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 532 (546)
Q Consensus 499 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 532 (546)
+|+++|+++|+++.+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999963
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.00023 Score=61.29 Aligned_cols=227 Identities=14% Similarity=0.117 Sum_probs=127.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-------------------hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------------------CDCIGNLGIAYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (546)
+...|...-.++.+...+++|...+...-.++..+ .......|.+...+|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34567777778888888888887776655543211 11233446666677877777665554
Q ss_pred HHhhC------------CC-CHHHHH-HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC-CCCHH
Q 009045 302 LILKD------------QN-HPAALI-NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAAH 366 (546)
Q Consensus 302 al~~~------------p~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 366 (546)
....- |. ....|. .++.+.. .+..++.-.|.|.-.+..+.+.++.+ |..+.
T Consensus 148 L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy--------------~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~ 213 (366)
T KOG2796|consen 148 LKTVVSKILANLEQGLAEESSIRLWRKRLGRVMY--------------SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ 213 (366)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH--------------HHHHHHhcchhhhhhHHHHHHHHHhCCcccHH
Confidence 43210 00 111111 1111111 12344456666777777777777666 44666
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHH
Q 009045 367 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 446 (546)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (546)
....||.+-++.|+.+.|..+|+.+-+... .+.... ..-.
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~------------------------------------kL~~~q----~~~~ 253 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQ------------------------------------KLDGLQ----GKIM 253 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHh------------------------------------hhhccc----hhHH
Confidence 666677777777777777666665542111 011111 1123
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Q 009045 447 AWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAY 521 (546)
Q Consensus 447 ~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~ 521 (546)
+..+.+.++.-.+++..|...+.+.+. +.+..+..+.|.|++..|+..+|++.++.+++..|.. ....++|..+|
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 445566666666777777777766443 4444555567777777777777777777777777753 23445555554
No 212
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00016 Score=64.53 Aligned_cols=153 Identities=8% Similarity=-0.010 Sum_probs=127.5
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-CCCC---hHHHHHHHHHHHHcCCHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNN---CDCIGNLGIAYFQSGDMEQ 294 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~ 294 (546)
...|++.+|....++.++..|.+..++..--.+++..|+...-...+++++-. +++. ..+.-.++..+...|-|++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45677799999999999999999999988889999999999999999999877 6655 4566677888899999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC----CHHHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----AAHIWAN 370 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~ 370 (546)
|.+.-++++++++.+..+...++.++. ..|++.++.+++.+.-..-.. ...-|..
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVle---------------------m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH 252 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLE---------------------MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH 252 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHH---------------------hcchhhhHHHHHHhcccchhhhhHHHhhhhHH
Confidence 999999999999999999888888877 788999999988875443222 1123455
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 009045 371 LANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al 392 (546)
.+.++...+.|+.|++.|.+-+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHH
Confidence 6888889999999999998754
No 213
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.27 E-value=0.0045 Score=59.27 Aligned_cols=181 Identities=10% Similarity=0.044 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHhhhc
Q 009045 352 ECLLAALKADPKAAHIWANLANAYYLTGD--------------HRSSGKCLEKAAKLEPNC-MSTRYAVAVSRIKDAERS 416 (546)
Q Consensus 352 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~-~~~~~~l~~~~l~~~~~~ 416 (546)
-.|++++..-+..+++|+.-+.-+...++ .+++..+|++++...-.. ...++.+ ....+....
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~--a~~eE~~~~ 343 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL--ADYEESRYD 343 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHhcc
Confidence 34556666556667777666555555544 567777777777543322 1112222 112211111
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhh--HHhhHHH-HHHHhccH
Q 009045 417 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC--AGAGESA-FLDQASAV 493 (546)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~la~-~~~~~g~~ 493 (546)
....+......+.+... ... +...+|..+-..-.+..-...|...|.++-+..-.. .+..-|. -|.-.++.
T Consensus 344 ~n~~~~~~~~~~~ll~~----~~~--~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~ 417 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKI----EDI--DLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDK 417 (656)
T ss_pred cchhhhhHHHHHHHHhh----hcc--CCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCCh
Confidence 11011111111111111 111 122345555555555556677777777755433222 2222221 34567889
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 494 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 494 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
.-|...|+-.++..++.+..-......+...++-..|...|++++..
T Consensus 418 ~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 418 ETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 99999999999999999988888888889999999999999998875
No 214
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.27 E-value=0.00064 Score=68.94 Aligned_cols=149 Identities=23% Similarity=0.167 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-----CChHHHHHHHHhhHhc-----CCCChHHHHHHHHHHHHcC--
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKS-----GRLQSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSG-- 290 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 290 (546)
+...|..+++.+... .+..+...+|.+|..- .+.+.|+.+|+.+... .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 467888888888754 4677888888888764 6899999999999771 1225678899999998853
Q ss_pred ---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 291 ---DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 291 ---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
+...|..+|.++-... ++.+.+.+|.++.. |. ...++..|.++|..+... .+..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~---------------g~---~~~d~~~A~~yy~~Aa~~--G~~~A 362 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYET---------------GT---KERDYRRAFEYYSLAAKA--GHILA 362 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHc---------------CC---ccccHHHHHHHHHHHHHc--CChHH
Confidence 6788999999998765 56778888988872 11 235788999999999865 56888
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHhcC
Q 009045 368 WANLANAYYL----TGDHRSSGKCLEKAAKLE 395 (546)
Q Consensus 368 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~ 395 (546)
.+.++.+|.. ..+...|..+|+++.+..
T Consensus 363 ~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 363 IYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 8999998875 357899999999999987
No 215
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.24 E-value=2.4e-06 Score=53.28 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 283 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 283 (546)
++..+|.+|...|++++|+..|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555555544
No 216
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.23 E-value=1.5e-06 Score=81.25 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=97.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.+..+.|+.|+..|.++++++|+.+..+-+++.++.+.+++..|+..+.++++++|....+|+..|.+...++++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.|+....+.|+++.+...+..+-
T Consensus 94 ~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHhhhcCcCcHHHHHHHHHHH
Confidence 99999999999998876665554
No 217
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.00067 Score=63.74 Aligned_cols=132 Identities=13% Similarity=0.083 Sum_probs=98.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChh
Q 009045 143 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 222 (546)
Q Consensus 143 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 222 (546)
+.....+.+.+++..+..++..|++.+|.+.+...=-. . .+... ..-....|.....+|-+ +++.+
T Consensus 232 vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~---~-----~~g~~--~T~q~~~cif~NNlGcI----h~~~~ 297 (696)
T KOG2471|consen 232 VMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIH---K-----EAGGT--ITPQLSSCIFNNNLGCI----HYQLG 297 (696)
T ss_pred hhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccc---c-----ccCcc--ccchhhhheeecCcceE----eeehh
Confidence 34445678899999999999999999999887654211 0 11110 01112344555666666 67778
Q ss_pred hHHHHHHHHHHHHhc---------Cc---------ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHH
Q 009045 223 ELEEILSKLKESMQS---------DT---------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI 284 (546)
Q Consensus 223 ~~~~A~~~~~~al~~---------~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 284 (546)
.|.-+..+|.++++. .| ....++++.|..|...|+.-.|.++|.+++.....++..|..++.
T Consensus 298 ~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 298 CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 889999999999851 11 235689999999999999999999999999999999999999999
Q ss_pred HHHH
Q 009045 285 AYFQ 288 (546)
Q Consensus 285 ~~~~ 288 (546)
+...
T Consensus 378 cCim 381 (696)
T KOG2471|consen 378 CCIM 381 (696)
T ss_pred HHHH
Confidence 8865
No 218
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.22 E-value=0.00068 Score=66.83 Aligned_cols=346 Identities=14% Similarity=0.136 Sum_probs=191.0
Q ss_pred hhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCCCchHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChhH
Q 009045 91 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKGLVHVARKMPKN-AHAHFLLGLMYQRLGQPLK 169 (546)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~a~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~ 169 (546)
-..+.++-+.|+.+..+ ..|++++++ +.+|.. .++|.++.+-+ -|.. ...--..|.-+...|+++.
T Consensus 658 lik~elydkagdlfeki-~d~dkale~--------fkkgda-f~kaielarfa---fp~evv~lee~wg~hl~~~~q~da 724 (1636)
T KOG3616|consen 658 LIKGELYDKAGDLFEKI-HDFDKALEC--------FKKGDA-FGKAIELARFA---FPEEVVKLEEAWGDHLEQIGQLDA 724 (1636)
T ss_pred HHhhHHHHhhhhHHHHh-hCHHHHHHH--------HHcccH-HHHHHHHHHhh---CcHHHhhHHHHHhHHHHHHHhHHH
Confidence 34677888899999998 899999988 445554 24444432222 2322 2223345777888999999
Q ss_pred HHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHH
Q 009045 170 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 249 (546)
Q Consensus 170 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 249 (546)
|+..|-.+--+- ..+. ..+...+|.+|+..++....... ....|-.++
T Consensus 725 ainhfiea~~~~-------------kaie------------------aai~akew~kai~ildniqdqk~-~s~yy~~ia 772 (1636)
T KOG3616|consen 725 AINHFIEANCLI-------------KAIE------------------AAIGAKEWKKAISILDNIQDQKT-ASGYYGEIA 772 (1636)
T ss_pred HHHHHHHhhhHH-------------HHHH------------------HHhhhhhhhhhHhHHHHhhhhcc-ccccchHHH
Confidence 999887764331 0000 02345667888887776544322 233455678
Q ss_pred HHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHhhCccc
Q 009045 250 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA-LINYAALLLCKYGSVL 328 (546)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~ 328 (546)
.-|...|+|+.|.+.|.++- ....-...|-+.|+|.+|.+.-+++.. |..... +...+.-+...
T Consensus 773 dhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldeh----- 837 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEH----- 837 (1636)
T ss_pred HHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhh-----
Confidence 88888888888888887642 222334566778888888777666532 322221 22222211111
Q ss_pred cccccccccchHHHhhcCHHHHHHHHHHH------Hh----cCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 329 AGAGANTGEGACLDQASAVNVAKECLLAA------LK----ADPK-AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------l~----~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
..+...-.+|.-.|..++|+..|.+. +. ..|+ -.+.+..+|.-|...|+...|...|-++-.....
T Consensus 838 ---gkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaa 914 (1636)
T KOG3616|consen 838 ---GKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAA 914 (1636)
T ss_pred ---cchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHH
Confidence 11111112233445555566655542 11 1233 3457788899999999999999888766432110
Q ss_pred ChhHHHHHHHHHHHHhhh--------ccCchhHHHHHH----HHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHH
Q 009045 398 CMSTRYAVAVSRIKDAER--------SQEPTEQLSWAG----NEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAF 465 (546)
Q Consensus 398 ~~~~~~~l~~~~l~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 465 (546)
.....+...+.++.+ ..+....+.|+. ....+.+.... .+..-.......+-++-|+
T Consensus 915 ---vnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~g--------ll~~~id~a~d~~afd~af 983 (1636)
T KOG3616|consen 915 ---VNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHG--------LLEAAIDFAADNCAFDFAF 983 (1636)
T ss_pred ---HHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhh--------hHHHHhhhhhcccchhhHH
Confidence 000001111111110 001111122211 11111111100 0111112223445566666
Q ss_pred HHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 009045 466 ETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 510 (546)
Q Consensus 466 ~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 510 (546)
..-+-..+......+..++..+...|++++|-+.|-.+++++.-+
T Consensus 984 dlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 984 DLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 666666677777888889999999999999999999999988655
No 219
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.21 E-value=7.4e-05 Score=68.62 Aligned_cols=135 Identities=18% Similarity=0.250 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ-SGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
+|..+.....+.+..+.|..+|.++++..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|..+...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~- 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI- 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 566777777888889999999999997767778899999999777 556666999999999999999999888887776
Q ss_pred hhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
..|+.+.|...|++++..-+... .+|......-...|+.+......+++.+..|+..
T Consensus 82 --------------------~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 --------------------KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp --------------------HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred --------------------HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 78899999999999998866644 6888888888899999999999999999888754
No 220
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.18 E-value=5.5e-06 Score=51.65 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 276 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
+.++..+|.+|..+|++++|++.|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3678999999999999999999999999999999999988875
No 221
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.17 E-value=0.0042 Score=56.94 Aligned_cols=279 Identities=15% Similarity=0.094 Sum_probs=180.1
Q ss_pred CchHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccc
Q 009045 132 SSSREEKGLVHVARKMPKN--AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 209 (546)
Q Consensus 132 ~~~~a~~~~~~~l~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (546)
+...+.+.-.+.-++-..+ +-++..-+..-.-.|+++.|.+-|+..+. .|+...+. ..|+.+
T Consensus 99 da~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----------dPEtRllG----LRgLyl-- 162 (531)
T COG3898 99 DASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----------DPETRLLG----LRGLYL-- 162 (531)
T ss_pred chHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----------ChHHHHHh----HHHHHH--
Confidence 3355555555554433333 44555667888889999999999999886 33332211 111100
Q ss_pred cCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc---CCCCh-----HHHHH
Q 009045 210 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV---DPNNC-----DCIGN 281 (546)
Q Consensus 210 ~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~-----~~~~~ 281 (546)
.....|..+.|+.+-+.+-..-|.-+.++...-...+..|+|+.|++..+..... .++-. ..+..
T Consensus 163 -------eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 163 -------EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred -------HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 0235677799999999999999999988888888889999999999999876543 22211 11222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC
Q 009045 282 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361 (546)
Q Consensus 282 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 361 (546)
.+... -..+...|...-..+.++.|+...+-..-+..+. +.|+..++-..++.+.+..
T Consensus 236 kA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf---------------------~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 236 KAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALF---------------------RDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHH---------------------hccchhhhhhHHHHHHhcC
Confidence 22222 2346888999999999999999888877777777 8899999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCC
Q 009045 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAA---KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 438 (546)
Q Consensus 362 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (546)
|. +. ++.+|....--+.++.-++++- .+.|++.......
T Consensus 294 PH-P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~v--------------------------------- 335 (531)
T COG3898 294 PH-PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAV--------------------------------- 335 (531)
T ss_pred CC-hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHH---------------------------------
Confidence 86 33 3445555444455555555543 4456665444433
Q ss_pred CCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhh-hHHhhHHHHHHHh-ccHHHHHHHHHHHHHh
Q 009045 439 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE-CAGAGESAFLDQA-SAVNVAKECLLAALKA 506 (546)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 506 (546)
+..-...|++..|...-+......+. .++..++.+-... |+-.+...++-++++-
T Consensus 336 -------------a~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 336 -------------AEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -------------HHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 33334445555444444443333222 3334455554433 7778888888888763
No 222
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=7.9e-06 Score=68.98 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=47.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC
Q 009045 283 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362 (546)
Q Consensus 283 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 362 (546)
|..++.-.+|..|+.+|.+++.++|..+..+.+.+.+++ +.++++.+....+++++++|
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl---------------------k~~~~~~v~~dcrralql~~ 75 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL---------------------KLKHWEPVEEDCRRALQLDP 75 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH---------------------HhhhhhhhhhhHHHHHhcCh
Confidence 333444444555555555555555555554544444444 45555555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 363 KAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 363 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
+.+..++.+|.+......|++|+..+.++.
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 555555555555555555555555555553
No 223
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.12 E-value=3.1e-06 Score=48.97 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHH
Q 009045 139 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVS 172 (546)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 172 (546)
+|+++|+.+|+++.+|+.+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 224
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00018 Score=61.25 Aligned_cols=122 Identities=17% Similarity=0.114 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhccc--chhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRC--EADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
..++...|+-+++.|+|.+|...|+.|+....+- ...+..|.+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW----------------------------------- 222 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW----------------------------------- 222 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH-----------------------------------
Confidence 5677788888899999999999988887652110 000111122
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
++++......+.+.+.|+...|+|-++++....++..+|.+..+++..|.+....-+..+|...|.++++++|.
T Consensus 223 ------~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 223 ------LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred ------HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 22223334577888888999999999999999999999999999999999988888889999999999998887
Q ss_pred CHHHH
Q 009045 309 HPAAL 313 (546)
Q Consensus 309 ~~~~~ 313 (546)
-..+.
T Consensus 297 lasvV 301 (329)
T KOG0545|consen 297 LASVV 301 (329)
T ss_pred hHHHH
Confidence 65544
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0026 Score=54.04 Aligned_cols=151 Identities=9% Similarity=0.009 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcC-----C-CChHHHHHHHHHHHHcCCHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-----P-NNCDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~la~~~~~~g~~~~A 295 (546)
+++++|.++|.++- ..|....+|+.|=..|.++-... . +-...|...+.+|. .++..+|
T Consensus 28 ~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eA 92 (288)
T KOG1586|consen 28 NKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEA 92 (288)
T ss_pred cchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHH
Confidence 46799988888764 33444455555555555553331 1 12344555555554 4599999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHh-hcCHHHHHHHHHHHHhcCCC------CHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ-ASAVNVAKECLLAALKADPK------AAHIW 368 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~------~~~~~ 368 (546)
+.++++++++..+-. +.-. .+..+..+|.+|.. +.++++|+.+|+++-+-... .-..+
T Consensus 93 v~cL~~aieIyt~~G-------rf~~--------aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~ 157 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMG-------RFTM--------AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCL 157 (288)
T ss_pred HHHHHHHHHHHHhhh-------HHHH--------HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHH
Confidence 999999988754322 2211 02223345555555 48999999999998776443 22355
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 369 ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
...+..-...++|.+|+..|+++....-++....
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 6667777789999999999999988766665443
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00094 Score=57.04 Aligned_cols=202 Identities=16% Similarity=0.140 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
+..+..-+.+|....+|++|..++.+|.+-.-. +..+...+..+-..+.+. .+...+.++..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEn------nrslfhAAKayEqaamLa-----------ke~~klsEvvdl 93 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN------NRSLFHAAKAYEQAAMLA-----------KELSKLSEVVDL 93 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHHHHH-----------HHHHHhHHHHHH
Confidence 455666677888889999999999999875322 233334444444444333 244556888888
Q ss_pred HHHHHhcC-----cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 231 LKESMQSD-----TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 231 ~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
|+++.... |+.+..-...+--....-+.++|++.|++++.+-... .+.+...++++.+..++.+|-..+
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHH
Confidence 88887653 3333333344444566788999999999988763322 456667788888999999988877
Q ss_pred HHHHhh----C--CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc----CCCCHHHHH
Q 009045 300 QDLILK----D--QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPKAAHIWA 369 (546)
Q Consensus 300 ~~al~~----~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~ 369 (546)
.+-... + +.....+.....+++ ...+|..|..+++...++ .+++..+..
T Consensus 174 lKe~~~~~~~~~y~~~~k~~va~ilv~L---------------------~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 174 LKEGVAADKCDAYNSQCKAYVAAILVYL---------------------YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHhhhHHHHHhhcccHHHHHHHHHHHHh---------------------hHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 764422 2 222222332223333 567889999999887665 334556666
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 009045 370 NLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~a 391 (546)
+|-..| ..|+.++....+..-
T Consensus 233 nLL~ay-d~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLSSP 253 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHcCh
Confidence 665554 567777766655433
No 227
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.04 E-value=0.0002 Score=67.79 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=116.2
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC-----------------------C--
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-----------------------N-- 274 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----------------------~-- 274 (546)
+..+...-++.-.+|++++|+.+.+|..|+.- ......+|..+|+++++... .
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 56677899999999999999999999988763 23345777777777766311 0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
...+...+|.+..++|+.++|++.++..++..|. +.....++..+++ ..+.|.++..
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL---------------------elq~Yad~q~ 316 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL---------------------ELQAYADVQA 316 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH---------------------hcCCHHHHHH
Confidence 1335667899999999999999999999988775 4456777777776 8888999988
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHH-cCC---------------hHHHHHHHHHHHhcCCCChhHH
Q 009045 353 CLLAALKA-DPKAAHIWANLANAYYL-TGD---------------HRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 353 ~~~~al~~-~p~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~ 402 (546)
.+.+--++ -|+.+...+..+.+-.+ .++ -..|++.+.++++.+|..+...
T Consensus 317 lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 88886443 25556666655554332 121 1347788999999999876543
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.03 E-value=0.00032 Score=66.40 Aligned_cols=216 Identities=15% Similarity=0.058 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+-.++..++++++|+.+.+|..|+.-.. .-..+|..+|+++++..... +....
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~----------------lg~s~-------- 238 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEAS----------------LGKSQ-------- 238 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHh----------------hchhh--------
Confidence 33445778899999999999988876432 34688999999998863111 11000
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC--ChHHHHHHHHHHHHc
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQS 289 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 289 (546)
..+....+-..+..... ...+...+|.|..++|+.++|++.|+..++..|. +..++.+|..++..+
T Consensus 239 ----------~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLel 308 (539)
T PF04184_consen 239 ----------FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLEL 308 (539)
T ss_pred ----------hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhc
Confidence 00000001111111111 1345677999999999999999999999988774 567999999999999
Q ss_pred CCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhc---CHHHHHHHHHHHHhcCCCCH
Q 009045 290 GDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS---AVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 290 g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~ 365 (546)
+.|.++...+.+--++ -|+.....+..+.+..+.-.+.. ....-.+.| .-..|++.+.+|++.+|..+
T Consensus 309 q~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~f--------s~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 309 QAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKF--------SPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred CCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhcccc--------CchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 9999999998885433 24444444444433322100000 000111222 12348899999999999877
Q ss_pred HHHHHHHH------HHHHcCChHHHHHHHHHHHhc
Q 009045 366 HIWANLAN------AYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 366 ~~~~~l~~------~~~~~g~~~~A~~~~~~al~~ 394 (546)
..+..+=. -+.+.|+ .||+.+---.+..
T Consensus 381 ~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~h 414 (539)
T PF04184_consen 381 KYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQH 414 (539)
T ss_pred hhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHH
Confidence 65543321 2344554 6777666555543
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0032 Score=53.87 Aligned_cols=151 Identities=15% Similarity=0.039 Sum_probs=78.1
Q ss_pred hhcCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhcc
Q 009045 343 QASAVNVAKECLLAALKA-----DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~ 417 (546)
....+.++..+|+++..+ .|+.+..-...+--.....+.++|+..|++++.+...........
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~------------ 150 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF------------ 150 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH------------
Confidence 455566666666666544 233232233333334455677778888877776654433222111
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--------chhhhHHhhHHHHHHH
Q 009045 418 EPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAGESAFLDQ 489 (546)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~la~~~~~ 489 (546)
..+-..+.++....++.+|-..+.+... +..-..+.....+++.
T Consensus 151 ----------------------------el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 151 ----------------------------ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred ----------------------------HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 2233444555555555555555544221 1111223333345566
Q ss_pred hccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009045 490 ASAVNVAKECLLAALKA----DPKAAHIWANLANAYYLTGDHRSSGKCL 534 (546)
Q Consensus 490 ~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 534 (546)
..+|..|..+++..-++ .|++..+..+|-..| ..|+.++....+
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 66888888888876654 344455555555544 456666655443
No 230
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=9.7e-05 Score=62.79 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=56.3
Q ss_pred hHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 339 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 339 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
.|+...|+|-++++.....+..+|.+..+++..|.++...=+..+|...|.++++++|.-.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 3444899999999999999999999999999999999999999999999999999999754
No 231
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.034 Score=57.55 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (546)
++++.|.++.++. +.+..|..+|.+..+.|...+|++.|-++ +++..|.....+..+.|.|++-++++.-
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3446666655553 34678888888888888888888888764 5666777777888888888888888776
Q ss_pred HHhhCCC-CHHH--HHHHHHH------------------------HHHhhCcc-----ccccccccccchHHHhhcCHHH
Q 009045 302 LILKDQN-HPAA--LINYAAL------------------------LLCKYGSV-----LAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 302 al~~~p~-~~~~--~~~l~~~------------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
+-+.-.. ..+. .+.++.+ ++...... ......+..++..+..+|+|+.
T Consensus 1159 aRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1159 ARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 6543211 1111 1111111 00000000 0013334457777888899999
Q ss_pred HHHHHHHHHhcCC-----------C--------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHH
Q 009045 350 AKECLLAALKADP-----------K--------------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 404 (546)
Q Consensus 350 A~~~~~~al~~~p-----------~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 404 (546)
|++..+++-.... . .++-+-.+...|...|-+++-+..++.++.+...+...+..
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTE 1318 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTE 1318 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHH
Confidence 9888887643210 0 23344566777888999999999999999887766666555
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q 009045 405 VAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE 469 (546)
Q Consensus 405 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 469 (546)
++..+-.-.-.....--.+-|..-.+.+.++.. +....|..+..+|..-..|+.|.....
T Consensus 1319 LaiLYskykp~km~EHl~LFwsRvNipKviRA~-----eqahlW~ElvfLY~~y~eyDNAa~tmm 1378 (1666)
T KOG0985|consen 1319 LAILYSKYKPEKMMEHLKLFWSRVNIPKVIRAA-----EQAHLWSELVFLYDKYEEYDNAALTMM 1378 (1666)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 555332211000000011112222222333322 224678888888888888887765543
No 232
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.90 E-value=0.00037 Score=64.05 Aligned_cols=127 Identities=10% Similarity=0.062 Sum_probs=100.8
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK-SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+.+..+.|...|.++++..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+...|+.+.|...
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~l 92 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARAL 92 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence 34557999999999997777778999999999777 56666699999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCH---HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 299 FQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 299 ~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
|++++..-+... ..|..+...-. ..|+.+...+..+++.+..|.....
T Consensus 93 fer~i~~l~~~~~~~~iw~~~i~fE~---------------------~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 93 FERAISSLPKEKQSKKIWKKFIEFES---------------------KYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHCCTSSCHHHCHHHHHHHHHHHH---------------------HHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999998866655 23443333333 7899999999999999998884443
No 233
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.89 E-value=0.0009 Score=64.31 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=86.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccc
Q 009045 139 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE 218 (546)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (546)
..-..++.+|.++..+..-+.....+|+..+|+.++..++-..+.- ..+ .+...+|.++.+.|..
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h-----~kd-----i~lLSlaTiL~RaG~s----- 265 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRH-----NKD-----IALLSLATVLHRAGFS----- 265 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc-----ccc-----chhhhHHHHHHHcccc-----
Confidence 4455667777777666555555556899999999999999885432 111 2234556666666655
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC 276 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 276 (546)
.+|--++..|+...|....-++.+|.++...+.+...+.+|..+.+.+|...
T Consensus 266 ------adA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 266 ------ADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred ------cchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence 7777777888877776667789999999999999999999999999988653
No 234
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.88 E-value=3e-05 Score=72.78 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 325 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 325 (546)
-..+...+.-+.|+.|+..|.++|+++|+++..+.+.+..+.+.+++..|+..+.++++.+|....+++..|....
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m---- 83 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM---- 83 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH----
Confidence 3456677888999999999999999999999999999999999999999999999999999999999888888777
Q ss_pred ccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009045 326 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
..+.+.+|+..|+....+.|+++.+...+-.|-.
T Consensus 84 -----------------~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 84 -----------------ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred -----------------hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 8899999999999999999999998877776644
No 235
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.86 E-value=2.9e-05 Score=45.24 Aligned_cols=34 Identities=32% Similarity=0.559 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
+.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999863
No 236
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.011 Score=51.40 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKS-GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME-QSAKCFQDL 302 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~a 302 (546)
..|+..-..++.++|.+..+|..+-.++..+ .+..+-++++..++.-+|++..+|...-.+....|++. .-++..+.+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 5556666666666666666665555554443 24455566666666666666666666666666666665 556666666
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC--
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL-TG-- 379 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g-- 379 (546)
+..+..+..+|...-.++. ..+.++.-+.+..+.++.+-.+-.+|...--+... .|
T Consensus 140 l~~DaKNYHaWshRqW~~r---------------------~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~ 198 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLR---------------------FFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVI 198 (318)
T ss_pred HhccccchhhhHHHHHHHH---------------------HHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCc
Confidence 6666666666665555554 44556666666666666555544444432211111 11
Q ss_pred ---ChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 380 ---DHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 380 ---~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
..+.-+.+..+.+...|++..+|..+
T Consensus 199 ~~~~le~El~yt~~~I~~vP~NeSaWnYL 227 (318)
T KOG0530|consen 199 SKAELERELNYTKDKILLVPNNESAWNYL 227 (318)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 12233445555666666666666544
No 237
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.85 E-value=0.0059 Score=58.82 Aligned_cols=65 Identities=17% Similarity=0.034 Sum_probs=48.5
Q ss_pred hHHhhHHHHHHHh------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh-----------------HHHHHHH
Q 009045 478 CAGAGESAFLDQA------SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH-----------------RSSGKCL 534 (546)
Q Consensus 478 ~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------~~A~~~~ 534 (546)
.++..+|...... +..++++..|+++++.+|+...+|+.+|..+...=+. ..|+..|
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y 332 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY 332 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence 4455666666666 7889999999999999999999999999987544221 2367777
Q ss_pred HHHHHHhc
Q 009045 535 EKVLMVYC 542 (546)
Q Consensus 535 ~~al~~~~ 542 (546)
-+++.+.+
T Consensus 333 ~~al~~~~ 340 (352)
T PF02259_consen 333 LKALSLGS 340 (352)
T ss_pred HHHHhhCC
Confidence 77776554
No 238
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.84 E-value=0.028 Score=52.92 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHH
Q 009045 152 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 231 (546)
Q Consensus 152 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 231 (546)
-.+...|.++.+++++.+|...|.+..+..... |.... -.++.++..- .+-.++.+.-...+
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~------~f~lk-eEvl~griln-----------Affl~nld~Me~~l 68 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESS------PFLLK-EEVLGGRILN-----------AFFLNNLDLMEKQL 68 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcc------hHHHH-HHHHhhHHHH-----------HHHHhhHHHHHHHH
Confidence 345677899999999999999999998753221 11111 0111111000 11234445555555
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---------------hHHHHHHHHHHHHcCCHHHHH
Q 009045 232 KESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 232 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~ 296 (546)
...-+..|..+....-.|...++.+.|.+|++.+..--..-... ...-...+.++...|++.++.
T Consensus 69 ~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR 148 (549)
T PF07079_consen 69 MELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGR 148 (549)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHH
Confidence 55555677777777788888888899999888776544331110 111224567778889999988
Q ss_pred HHHHHHHh
Q 009045 297 KCFQDLIL 304 (546)
Q Consensus 297 ~~~~~al~ 304 (546)
..+++.+.
T Consensus 149 ~iLn~i~~ 156 (549)
T PF07079_consen 149 AILNRIIE 156 (549)
T ss_pred HHHHHHHH
Confidence 88887764
No 239
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.84 E-value=3.5e-05 Score=44.91 Aligned_cols=31 Identities=39% Similarity=0.572 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 278 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555443
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.83 E-value=0.0032 Score=59.01 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=114.8
Q ss_pred ccChhhHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHH---cCChHHHHHHHHh-hHhcCCCChHHHHHHHHHHHHc
Q 009045 218 ELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLK---SGRLQSSISVLSS-LLAVDPNNCDCIGNLGIAYFQS 289 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~~~~la~~~~~~ 289 (546)
|....+|+.-++..+..-.. -++...+.+.+|.++.+ .|+.++|+..+.. .....+.+++.+..+|.+|...
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 35667788888888877665 45567788889999999 9999999999999 5555678899999999998642
Q ss_pred ---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH---HHHH
Q 009045 290 ---------GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC---LLAA 357 (546)
Q Consensus 290 ---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~---~~~a 357 (546)
...++|+.+|.+++.++|+. ..-++++.++...+... ..-.+..+. +...
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~-----------------~~~~el~~i~~~l~~l 292 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDF-----------------ETSEELRKIGVKLSSL 292 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcc-----------------cchHHHHHHHHHHHHH
Confidence 34789999999999999654 34456666655322110 000011111 1111
Q ss_pred H-h----cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 358 L-K----ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 358 l-~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
+ + -.-.+...+-.++.+..-.|++++|+..+++++++.|....
T Consensus 293 lg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 293 LGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1 1 11123445566788888899999999999999999876654
No 241
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.82 E-value=5.6e-05 Score=44.05 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 278 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
+++.+|.+++.+|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555544
No 242
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.81 E-value=0.0037 Score=61.92 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhh------Hhc----CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSL------LAV----DPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
..|-.-|.+|.+..++++|+++|++. +++ .|.. ...--..|.-+...|+++.|+..|-.+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 45555666677777777777766543 322 2222 112233455666677777777766544
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.81 E-value=5.6e-05 Score=44.06 Aligned_cols=34 Identities=38% Similarity=0.637 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
+.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678899999999999999999999999999975
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0016 Score=58.36 Aligned_cols=126 Identities=16% Similarity=0.131 Sum_probs=106.2
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhCc
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGS 326 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~ 326 (546)
-+.+.+..|++.+|-...++.++..|.+.-++..--.+++.+|+...-...+++.+.. +++-+-..+.-|..-
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya------ 182 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA------ 182 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHH------
Confidence 3456677899999999999999999999999998899999999999999999999977 666544333333222
Q ss_pred cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009045 327 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 391 (546)
-.+...|-|++|.+..++++++++.+.-+...++.++...|++.++.+.+.+.
T Consensus 183 ------------FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 183 ------------FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred ------------hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 23448899999999999999999999999999999999999999999988764
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0016 Score=57.66 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
.-+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+.
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA 192 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH
Confidence 334444555555555555555555555555555555555555555555554443
No 246
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.05 Score=51.66 Aligned_cols=118 Identities=16% Similarity=0.104 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHHhCCCC---HHHHHHHHHHH-HHcCChhHHHHHHHHHHHHhcccchhccchhhH-HHHHHHhhccccc
Q 009045 133 SSREEKGLVHVARKMPKN---AHAHFLLGLMY-QRLGQPLKAVSSYEKAEEILLRCEADIARPELL-SLVQIHHAQCLLP 207 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~---~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~ 207 (546)
.+.++++++..+...|.+ +..+..+|.++ ....+++.|...++++..+... -|.+. .-......++.++
T Consensus 25 Ikk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~------ip~fydvKf~a~SlLa~lh 98 (629)
T KOG2300|consen 25 IKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS------IPSFYDVKFQAASLLAHLH 98 (629)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc------cccHHhhhhHHHHHHHHHH
Confidence 378888888888887764 56677788765 4578999999999999877421 22221 0111222233332
Q ss_pred cccCCCccccccChhhHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHcCChHHHHHHHH
Q 009045 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV----VWNTLGLILLKSGRLQSSISVLS 266 (546)
Q Consensus 208 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~ 266 (546)
.... ..+..+...+++++++....+. ..+.++.++.-..++..|++.+.
T Consensus 99 ~~~~----------~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 99 HQLA----------QSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHhc----------CCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 2221 1468899999999988765543 55668888888888888887643
No 247
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.70 E-value=0.09 Score=54.54 Aligned_cols=294 Identities=14% Similarity=0.022 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhcCc----ccHHHHHHHHHHHH-HcCChHHHHHHHHhhHhcCCC--C----hHHHHHHHHHHHHcCCHH
Q 009045 225 EEILSKLKESMQSDT----RQAVVWNTLGLILL-KSGRLQSSISVLSSLLAVDPN--N----CDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 225 ~~A~~~~~~al~~~p----~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~ 293 (546)
..|+.+++-+++..+ ..+.+++.+|.+++ ...+++.|..++.+++.+... . ..+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 667788877774222 23558888999887 789999999999999887643 2 234556788888888877
Q ss_pred HHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--CCCHHH---
Q 009045 294 QSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHI--- 367 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~--- 367 (546)
|....++.++..... ...|...-..+. .......+++..|++.++...... ..++.+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~----------------~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLK----------------IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHH----------------HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 999999998765441 112222222221 011113379999999999988775 243332
Q ss_pred -HHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCh----hHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhc
Q 009045 368 -WANLANAYYLTGDHRSSGKCLEKAAKL------EPNCM----STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 436 (546)
Q Consensus 368 -~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~----~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (546)
....+.++...+..+++++..+++... +++.. .++..+.. +.-..... .........+.+...+..
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~--l~~~l~~~-~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD--LCCSLQQG-DVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH--HHHHHHcC-CHHHHHHHHHHHHHHHHH
Confidence 334466777788888888888877432 22221 11111111 11111111 111111111122221111
Q ss_pred CCCCC-------------------------C------C----cHHHHHHHHHHHHhcccHHHHHHHHHhhccchhh----
Q 009045 437 GDPVQ-------------------------I------E----PPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE---- 477 (546)
Q Consensus 437 ~~~~~-------------------------~------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---- 477 (546)
..... + . ...+|..-|......+..++|.+.+.+.+.....
T Consensus 258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~ 337 (608)
T PF10345_consen 258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK 337 (608)
T ss_pred hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence 11100 0 0 0112233344444555554555555543220000
Q ss_pred ------------------------hHHhhHHHHHHHhccHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHhc
Q 009045 478 ------------------------CAGAGESAFLDQASAVNVAKECLLAALKAD---PK------AAHIWANLANAYYLT 524 (546)
Q Consensus 478 ------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~lg~~~~~~ 524 (546)
...+..+.+.+-.+++..|...++.+.... |. .+..++..|..+...
T Consensus 338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~ 417 (608)
T PF10345_consen 338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST 417 (608)
T ss_pred CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence 124466677778899999999888777642 22 377889999999999
Q ss_pred CChHHHHHHHHHHH
Q 009045 525 GDHRSSGKCLEKVL 538 (546)
Q Consensus 525 g~~~~A~~~~~~al 538 (546)
|+.+.|..+|.+..
T Consensus 418 g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 418 GDLEAALYQYQKPR 431 (608)
T ss_pred CCHHHHHHHHhhhH
Confidence 99999999998444
No 248
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.68 E-value=0.0031 Score=51.78 Aligned_cols=114 Identities=20% Similarity=0.188 Sum_probs=80.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhH-HHHHHHHHH
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL-EEILSKLKE 233 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~A~~~~~~ 233 (546)
...|......|+...++..+++++.+...+-..... ...| ......++.
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~------------------------------~~~W~~~~r~~l~~ 59 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLD------------------------------DEEWVEPERERLRE 59 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT------------------------------TSTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC------------------------------ccHHHHHHHHHHHH
Confidence 344666677889999999999999875322100000 0011 222233333
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 234 SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 234 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
. ...+...++..+...|++++|+..+++++..+|.+-.++..+..+|...|+..+|++.|++...
T Consensus 60 ~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 60 L------YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp H------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 2467778899999999999999999999999999999999999999999999999999998764
No 249
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.67 E-value=0.052 Score=51.10 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILK----DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 350 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 350 (546)
.+++..++=..|....+|+.-++..+..-.+ -++.......++.++.++ .+.|+.++|
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr------------------n~~gdre~A 201 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR------------------NKPGDREKA 201 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc------------------ccCCCHHHH
Confidence 3566778888899999999999998887665 344555566666666521 138999999
Q ss_pred HHHHHHH-HhcCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCChh
Q 009045 351 KECLLAA-LKADPKAAHIWANLANAYYLT---------GDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 351 ~~~~~~a-l~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~ 400 (546)
+..+..+ ....+.+++.+..+|.+|..+ ...++|+..|.++.+++|+...
T Consensus 202 l~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 202 LQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 9999994 455667899999999998642 3478999999999999976543
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.61 E-value=0.0018 Score=64.03 Aligned_cols=134 Identities=19% Similarity=0.162 Sum_probs=96.9
Q ss_pred HcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccH
Q 009045 163 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA 242 (546)
Q Consensus 163 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 242 (546)
-.|+-+.++..+.++.+. .+- +..+..++-..+.... ....+.. . ...+.+.|.+.+....+..|+..
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i-----~~~la~L~LL~y~~~~-~~~~~~~----~-~~~~~~~a~~lL~~~~~~yP~s~ 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENI-----RSPLAALVLLWYHLVV-PSFLGID----G-EDVPLEEAEELLEEMLKRYPNSA 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCc-----chHHHHHHHHHHHHHH-HHHcCCc----c-cCCCHHHHHHHHHHHHHhCCCcH
Confidence 358899999999998763 111 2222222222111111 0111110 0 34567999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
-.++..|+++...|+.++|++.|++++...... .-.++.+|.++..+++|++|..+|.+..+.+.-
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999988643332 346889999999999999999999999986544
No 251
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.0076 Score=49.99 Aligned_cols=116 Identities=15% Similarity=0.131 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 226 EILSKLKESMQSDTRQA---VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
+.....++....++... -+...++..+...|++++|+..++.++....+. .-+-.+|+.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444445555554432 245567888999999999999999988654332 345678899999999999998887
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 300 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
...-. ..|..+..-+ .|+++...|+-++|+..|++++...+.
T Consensus 150 ~t~~~------~~w~~~~~el----------------rGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKE------ESWAAIVAEL----------------RGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hcccc------ccHHHHHHHH----------------hhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 65422 1122221111 145555888888888888888887644
No 252
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.58 E-value=2.4e-05 Score=69.88 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=85.4
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+..|.++.|++.|..++.++|..+..+..++.++..+++...|+..+..+++++|+....+-..|.....+|+|.+|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 009045 299 FQDLILKDQN 308 (546)
Q Consensus 299 ~~~al~~~p~ 308 (546)
+..+.+++-+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 9999987643
No 253
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.028 Score=48.87 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChH-HHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ-SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (546)
++.+-++++.++++.+|.+..+|..+-.+....|+.. .-++..+.++..+.++..+|...-.+....+.++.-+.+..+
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4688899999999999999999999999999999888 889999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC-
Q 009045 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL-TG- 379 (546)
Q Consensus 302 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g- 379 (546)
.++.+-.+-.+|...-.+.... .|.. ..-..+.-+.+..+.|.+.|++..+|..|..++.. .|
T Consensus 173 Lle~Di~NNSAWN~Ryfvi~~~-------------~~~~--~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl 237 (318)
T KOG0530|consen 173 LLEEDIRNNSAWNQRYFVITNT-------------KGVI--SKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGL 237 (318)
T ss_pred HHHHhhhccchhheeeEEEEec-------------cCCc--cHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCC
Confidence 9998877777765432221100 0000 11234566788889999999999999999988886 44
Q ss_pred -ChHHHHHHHHHHH
Q 009045 380 -DHRSSGKCLEKAA 392 (546)
Q Consensus 380 -~~~~A~~~~~~al 392 (546)
.+.+-.......+
T Consensus 238 ~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 238 SSDSKVVSFVENLY 251 (318)
T ss_pred cCCchHHHHHHHHh
Confidence 2344444444444
No 254
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00018 Score=64.15 Aligned_cols=93 Identities=11% Similarity=0.175 Sum_probs=84.0
Q ss_pred ccChhhHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
+++..+|..|+..|.+.|+..-.+ +..|.+++-+....|+|..|+....+++.++|.+..+++.-+.+++.+.++.
T Consensus 91 ~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~ 170 (390)
T KOG0551|consen 91 YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFA 170 (390)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHH
Confidence 688899999999999999875443 5588999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCH
Q 009045 294 QSAKCFQDLILKDQNHP 310 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~ 310 (546)
+|..+.+..+.++....
T Consensus 171 ~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 171 EAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHHHHhhhhhhhHHHH
Confidence 99999999987765443
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.006 Score=54.22 Aligned_cols=145 Identities=16% Similarity=0.130 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
..+...|..++...|++.++...++.+|...|+.+.|...+...-..... ..... ...+..+. ...+.
T Consensus 151 ~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-------~~~~~-l~a~i~ll---~qaa~- 218 (304)
T COG3118 151 GEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-------KAAHG-LQAQIELL---EQAAA- 218 (304)
T ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-------hHHHH-HHHHHHHH---HHHhc-
Confidence 78888999999999999999999999999999999999888774322111 11110 01110110 00000
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC--CChHHHHHHHHHHHHcCC
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--NNCDCIGNLGIAYFQSGD 291 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~ 291 (546)
.++ ...+++.+..+|++..+-+.+|..+...|+.+.|++.+-..++.+. .+..+...+-.++...|.
T Consensus 219 -------~~~----~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 219 -------TPE----IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred -------CCC----HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 011 1345556678999999999999999999999999999998888755 345566666666666664
Q ss_pred HHHHHHHHHH
Q 009045 292 MEQSAKCFQD 301 (546)
Q Consensus 292 ~~~A~~~~~~ 301 (546)
-+.+...|++
T Consensus 288 ~Dp~~~~~RR 297 (304)
T COG3118 288 ADPLVLAYRR 297 (304)
T ss_pred CCHHHHHHHH
Confidence 4444444433
No 256
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0014 Score=58.68 Aligned_cols=101 Identities=18% Similarity=0.112 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN----NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
+.-+-.-|+-|++..+|..|+..|.+.|+..-. +...|.+.+.+.+.+|+|..|+....++++++|.+..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 445667899999999999999999999997443 3567889999999999999999999999999999999999888
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
.+++ .++++.+|+.+++..+.++.+
T Consensus 161 kc~~---------------------eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLL---------------------ELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHH---------------------HHHHHHHHHHHHhhhhhhhHH
Confidence 8887 888999999999988776544
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.43 E-value=0.006 Score=60.46 Aligned_cols=188 Identities=15% Similarity=0.004 Sum_probs=123.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHH
Q 009045 351 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEM 430 (546)
Q Consensus 351 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 430 (546)
+-.|.-++.+-|.. ...+-.+.--.|+-+.++..+.++.+ .++-....-.+.+..+-......-..+........+
T Consensus 177 ~G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 34455556655532 22333344456899999999999877 333222222222221111110000000012223334
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc------chhhhHHhhHHHHHHHhccHHHHHHHHHHHH
Q 009045 431 ASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS------KMEECAGAGESAFLDQASAVNVAKECLLAAL 504 (546)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 504 (546)
...+.......|+.....+..|.++...|+.++|+..+.+.+. +...-.++.++.++..+.+|++|..++.+.+
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 4555555556678888889999999999999999999997664 2333557899999999999999999999999
Q ss_pred HhCCCC-HHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHhc
Q 009045 505 KADPKA-AHIWANLANAYYLTGDH-------RSSGKCLEKVLMVYC 542 (546)
Q Consensus 505 ~~~p~~-~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~~ 542 (546)
+.+.-. +...|..|.|+...|+. ++|.++|.++-.+..
T Consensus 333 ~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 333 KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 876554 45567789999999999 888888887766553
No 258
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.40 E-value=0.00019 Score=64.33 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=81.3
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccccc
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 331 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 331 (546)
.+..|.+++|++.|..++.++|.....+...+.++.++++...|+..+..++.++|+....+-..+....
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r---------- 193 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER---------- 193 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH----------
Confidence 3456889999999999999999999999999999999999999999999999999998877766666655
Q ss_pred ccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 332 GANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
.+|+|++|...+..+.+++-+
T Consensus 194 -----------llg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 194 -----------LLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred -----------HhhchHHHHHHHHHHHhcccc
Confidence 789999999999999988654
No 259
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.39 E-value=0.034 Score=51.89 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=115.8
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCChHHHHHHHHhhHhcCCCC-hHHHHHHHHHHHHcC-----
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNN-CDCIGNLGIAYFQSG----- 290 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g----- 290 (546)
..+..+|...|+.+. ...++.+.+.+|.+|.. ..+..+|..+|.++....-.. ..+.+.+|..|..-.
T Consensus 90 ~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 90 SRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 456799999999554 45678899999999987 459999999999999875433 344888888887642
Q ss_pred --CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 291 --DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 291 --~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
+...|+..|.++.... +..+...+|.+|..- ..-..++.+|+.+|.++-+... ...+
T Consensus 168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G-----------------~Gv~~d~~~A~~wy~~Aa~~g~--~~a~ 226 (292)
T COG0790 168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG-----------------LGVPRDLKKAFRWYKKAAEQGD--GAAC 226 (292)
T ss_pred cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC-----------------CCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence 2337899999888765 778888888877631 1145689999999999999876 8888
Q ss_pred HHHHHHHHHcC---------------ChHHHHHHHHHHHhcCCCC
Q 009045 369 ANLANAYYLTG---------------DHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 369 ~~l~~~~~~~g---------------~~~~A~~~~~~al~~~p~~ 398 (546)
+.++ ++...| +...|...+..+....+..
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 8888 777666 6666667666666555443
No 260
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.38 E-value=0.00041 Score=40.29 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 278 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555555
No 261
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.38 E-value=0.054 Score=50.52 Aligned_cols=77 Identities=16% Similarity=0.069 Sum_probs=56.5
Q ss_pred HHHHHHHHhhccchhhhHHhhHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC------------
Q 009045 462 AAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG------------ 525 (546)
Q Consensus 462 ~~A~~~~~~~l~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g------------ 525 (546)
..|+..|.++.......+.+.+|.+|.. ..++.+|..+|.++-+... ..+++.++ ++...|
T Consensus 172 ~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~ 248 (292)
T COG0790 172 KKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAA 248 (292)
T ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccc
Confidence 4566666665555677777778877754 3368999999999988776 88888888 666666
Q ss_pred ---ChHHHHHHHHHHHHHh
Q 009045 526 ---DHRSSGKCLEKVLMVY 541 (546)
Q Consensus 526 ---~~~~A~~~~~~al~~~ 541 (546)
+...|..++.++....
T Consensus 249 ~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 249 KEEDKKQALEWLQKACELG 267 (292)
T ss_pred cCCCHHHHHHHHHHHHHcC
Confidence 7778888887776543
No 262
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.36 E-value=0.022 Score=53.62 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=115.8
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCC------------hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGR------------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
..|++.++.+|.+..+|..+....-..-. .+.-+..|++|++.+|++...+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999998876554432 456788999999999999999999988999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc-------C----C---
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-------D----P--- 362 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~----p--- 362 (546)
+.+++++..+|++...|..+-...... ...-.+......|.+++.. . +
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~------------------~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~ 147 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSN------------------FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLP 147 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHH------------------hccCcHHHHHHHHHHHHHHHHHhhccccccccchh
Confidence 999999999999999988776665421 0122355555666555543 1 0
Q ss_pred ----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 009045 363 ----KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 363 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 396 (546)
....+...+.......|..+.|+..++..++++=
T Consensus 148 ~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 148 ELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred hHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 1234566777888899999999999999998753
No 263
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.35 E-value=0.0089 Score=49.04 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=68.7
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCCC----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPNN----------------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
.|......++...++..+.+++.+.... ..+...++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3555556677777777777777763211 235567788888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 306 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 306 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
+|.+...+..+..++. ..|+...|+..|++...
T Consensus 92 dP~~E~~~~~lm~~~~---------------------~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALA---------------------AQGRRAEALRVYERYRR 124 (146)
T ss_dssp STT-HHHHHHHHHHHH---------------------HTT-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---------------------HCcCHHHHHHHHHHHHH
Confidence 9999999999998888 89999999999988754
No 264
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.34 E-value=0.00037 Score=40.48 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57888999999999999999999999998884
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.34 E-value=0.00048 Score=40.54 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 513 IWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
+|.+||.+|...|++++|+.+|++++.+-.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 467788888888888888888888776553
No 266
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.33 E-value=0.00037 Score=40.13 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 513 IWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
+++.+|.++...|++++|+..|+++++.+|.|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45666666666666666666666666666543
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.30 E-value=0.14 Score=47.15 Aligned_cols=240 Identities=16% Similarity=0.078 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHh----CCCC----HHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHhcc-cchhccchhhH-HHHHHHhh
Q 009045 134 SREEKGLVHVARK----MPKN----AHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLR-CEADIARPELL-SLVQIHHA 202 (546)
Q Consensus 134 ~~a~~~~~~~l~~----~p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~-~~~~~~~~ 202 (546)
..|+..+.++-.. +|+. ...+++.|......+ ++++|+.+++++.++... .......++.. -...++..
T Consensus 10 ~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~ 89 (278)
T PF08631_consen 10 DLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRL 89 (278)
T ss_pred HHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHH
Confidence 4555555554432 3332 566788888889999 999999999999998533 11112223321 12345556
Q ss_pred ccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC-CChHHHHH
Q 009045 203 QCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-NNCDCIGN 281 (546)
Q Consensus 203 ~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 281 (546)
++.++...+.. ...++|....+.+-...|+.+..+...-.++.+.++.+.+.+.+.+++..-+ .....-..
T Consensus 90 La~~~l~~~~~--------~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 90 LANAYLEWDTY--------ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHcCCCh--------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 66665444443 5667788888888888888888886666666678999999999999988644 11211111
Q ss_pred HHHH-HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 282 LGIA-YFQSGDMEQSAKCFQDLILK--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 282 la~~-~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
+..+ .........|...+...+.. .|.... +.....+....... ...-....+..+.....+....
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~----------~~~~~~~~~~i~~l~~~~~~v~ 230 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTT----------QSKDLSSSEKIESLEELLSIVE 230 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHc----------CCccccchhHHHHHHHHHHHHH
Confidence 2211 11223446777777777744 333221 33333222210000 0000001111233333333222
Q ss_pred hc--CCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 359 KA--DPKAA-------HIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 359 ~~--~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
+. .|-.. ....+.|...+..++|++|+..|+-++
T Consensus 231 ~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 231 HSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 11 12122 234566888999999999999999776
No 268
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.28 E-value=0.17 Score=47.78 Aligned_cols=378 Identities=9% Similarity=-0.021 Sum_probs=194.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccc
Q 009045 139 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE 218 (546)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (546)
-++.-++.+|++...|+.|...+..+|.+++-.+.|++...-.|-- ..++..+..+ .
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~----------~~aw~ly~s~-------------E 86 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM----------EHAWRLYMSG-------------E 86 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc----------cHHHHHHhcc-------------h
Confidence 3455678899999999999999999999999999999987654322 1112222222 1
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-C---------ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS-G---------RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 288 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g---------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 288 (546)
+..++|......|.+++...-+ .+.|...- -|.+. + ..-+|.+..-..+-.+|.....|...+..+..
T Consensus 87 LA~~df~svE~lf~rCL~k~l~-ldLW~lYl-~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~ 164 (660)
T COG5107 87 LARKDFRSVESLFGRCLKKSLN-LDLWMLYL-EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEY 164 (660)
T ss_pred hhhhhHHHHHHHHHHHHhhhcc-HhHHHHHH-HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 3557778888888887764332 33443322 22221 1 12233333333444577777777776655432
Q ss_pred ---------cCCHHHHHHHHHHHHhhCCCCHHH-HHHH-------------------------HHHHHHhhCcccc----
Q 009045 289 ---------SGDMEQSAKCFQDLILKDQNHPAA-LINY-------------------------AALLLCKYGSVLA---- 329 (546)
Q Consensus 289 ---------~g~~~~A~~~~~~al~~~p~~~~~-~~~l-------------------------~~~~~~~~~~~~~---- 329 (546)
+.+.+.-...|.+++..--++.+- |... +...++.......
T Consensus 165 ~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v 244 (660)
T COG5107 165 IEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSV 244 (660)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccc
Confidence 333445566677776532222111 1100 0000000000000
Q ss_pred ---------------ccccccccchH------HHhhcCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 009045 330 ---------------GAGANTGEGAC------LDQASAVNV-AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387 (546)
Q Consensus 330 ---------------~~~~~~~~~~~------~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 387 (546)
....|++.-.. ....+-..+ ---.+++++.-.+-.++.|+.-...+...++-+.|+..
T Consensus 245 ~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~t 324 (660)
T COG5107 245 KNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKT 324 (660)
T ss_pred cCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHH
Confidence 00011110000 001111222 22346677777777888888888888888999999998
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhH----HHHHHHHHHHHHhcCCCCCC------------CcHHHHHHH
Q 009045 388 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ----LSWAGNEMASILREGDPVQI------------EPPIAWAGF 451 (546)
Q Consensus 388 ~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l 451 (546)
.++++...|.-.. .+..-...-.+........+. +.................++ ....+|..+
T Consensus 325 v~rg~~~spsL~~-~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~ 403 (660)
T COG5107 325 VERGIEMSPSLTM-FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVH 403 (660)
T ss_pred HHhcccCCCchhe-eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHH
Confidence 8888888776211 000000000000000000000 00000000000011111011 111233333
Q ss_pred HHHHHhcccHHHHHHHHHhhccch--hhhHHhhHHH-HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChH
Q 009045 452 AAVQKTHHEVAAAFETEENELSKM--EECAGAGESA-FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 528 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 528 (546)
-....+..-.+.|...|.+.-+.. ....+..-|. -+...|++..|-..|+-.+...|+.+...+..-..+...++-.
T Consensus 404 ~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~ 483 (660)
T COG5107 404 LNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEE 483 (660)
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHH
Confidence 333344444566666666644422 1122222221 4557788999999999999999988877777777778889999
Q ss_pred HHHHHHHHHHHHhc
Q 009045 529 SSGKCLEKVLMVYC 542 (546)
Q Consensus 529 ~A~~~~~~al~~~~ 542 (546)
.|...|+++++...
T Consensus 484 naraLFetsv~r~~ 497 (660)
T COG5107 484 NARALFETSVERLE 497 (660)
T ss_pred HHHHHHHHhHHHHH
Confidence 99999998877653
No 269
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.24 E-value=0.32 Score=50.20 Aligned_cols=244 Identities=11% Similarity=-0.044 Sum_probs=132.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
++......++......++.+|.....++...-+. ....-..++...- -.|.+....|++++|++
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~a--------------L~a~val~~~~~e~a~~ 479 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQA--------------LRAQVALNRGDPEEAED 479 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHH--------------HHHHHHHhcCCHHHHHH
Confidence 4556666777778888888888888777654333 1111111111110 01344447899999999
Q ss_pred HHHHHHhcCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH----HHHHHHHhhhccCchhHH
Q 009045 353 CLLAALKADPK-----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV----AVSRIKDAERSQEPTEQL 423 (546)
Q Consensus 353 ~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----~~~~l~~~~~~~~~~~~~ 423 (546)
..+.++..-|. ...++..+|.+..-.|++++|..+...+.++.......++.+ -...+..... .......
T Consensus 480 lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG-q~~~a~~ 558 (894)
T COG2909 480 LARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG-QVARAEQ 558 (894)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh-HHHHHHH
Confidence 99999998776 355778899999999999999999999988754433322221 1111111111 0001111
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--------chhhh-HHhhHHHHHHHhccHH
Q 009045 424 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--------KMEEC-AGAGESAFLDQASAVN 494 (546)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--------~~~~~-~~~~la~~~~~~g~~~ 494 (546)
..+........... .+.........+.++...-+++.+.......+. +.... ..+.++.+....|+++
T Consensus 559 ~~~~~~~~~q~l~q---~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~ 635 (894)
T COG2909 559 EKAFNLIREQHLEQ---KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLD 635 (894)
T ss_pred HHHHHHHHHHHhhh---cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHH
Confidence 11111111111111 111112223333333333334444433333221 11122 2348899999999999
Q ss_pred HHHHHHHHHHHhCCCC--HH-----HHHHHHHHHHhcCChHHHHHHHHH
Q 009045 495 VAKECLLAALKADPKA--AH-----IWANLANAYYLTGDHRSSGKCLEK 536 (546)
Q Consensus 495 ~A~~~~~~al~~~p~~--~~-----~~~~lg~~~~~~g~~~~A~~~~~~ 536 (546)
+|...+.....+-.+. .. ++.-........||..+|.....+
T Consensus 636 ~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 636 KALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 9999999887753322 11 111122233677898888887766
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.23 E-value=0.2 Score=48.20 Aligned_cols=116 Identities=17% Similarity=0.127 Sum_probs=75.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHH
Q 009045 274 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN----HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
.....|...+.+..+.|+++.|...+.++....+. .+...+..+.+++ ..|+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw---------------------~~g~~~~ 202 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW---------------------AQGEQEE 202 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH---------------------HcCCHHH
Confidence 44556666666777777777777666666654321 2334444444444 5566666
Q ss_pred HHHHHHHHHhc-C---------------------------------CCCHHHHHHHHHHHHHc------CChHHHHHHHH
Q 009045 350 AKECLLAALKA-D---------------------------------PKAAHIWANLANAYYLT------GDHRSSGKCLE 389 (546)
Q Consensus 350 A~~~~~~al~~-~---------------------------------p~~~~~~~~l~~~~~~~------g~~~~A~~~~~ 389 (546)
|+..++..+.. . .....++..+|...... +..++++..|+
T Consensus 203 Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~ 282 (352)
T PF02259_consen 203 AIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYK 282 (352)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 66666555551 0 00245666777777777 88899999999
Q ss_pred HHHhcCCCChhHHHHHHHHHH
Q 009045 390 KAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 390 ~al~~~p~~~~~~~~l~~~~l 410 (546)
++++.+|....+++..+....
T Consensus 283 ~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 283 EATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhChhHHHHHHHHHHHHH
Confidence 999999999988888776443
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.23 E-value=0.17 Score=46.62 Aligned_cols=154 Identities=13% Similarity=0.116 Sum_probs=101.6
Q ss_pred ccChhhHHHHHHHHHHHHhcC----ccc----HHHHHHHHHHHHHcC-ChHHHHHHHHhhHhc----CC---CC------
Q 009045 218 ELEPEELEEILSKLKESMQSD----TRQ----AVVWNTLGLILLKSG-RLQSSISVLSSLLAV----DP---NN------ 275 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~----~p---~~------ 275 (546)
..++|+++.|..++.|+-... |+. ...+++.|......+ +++.|...++++.++ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357888999999999986543 433 347788899999999 999999999999887 21 11
Q ss_pred -hHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 276 -CDCIGNLGIAYFQSGDME---QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 276 -~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
..++..++.+|...+.++ +|....+.+-...|+.+..+...-.++. +.++.+.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~---------------------~~~~~~~~~ 141 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILL---------------------KSFDEEEYE 141 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHh---------------------ccCChhHHH
Confidence 346778899998888765 4555555555666776766644444443 467788888
Q ss_pred HHHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 352 ECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 352 ~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
+.+.+++..-+- +.........-+.. .....|...+...+.
T Consensus 142 ~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 142 EILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHH
Confidence 888888876442 12221111212222 334566666666654
No 272
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.20 E-value=0.052 Score=51.70 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=89.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccc
Q 009045 139 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE 218 (546)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (546)
.+...++.+|-+.+++..++.++..+|+...|.++.++|+-..-.. ..+.+. ....-...|.. .
T Consensus 28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~----~~~~F~--------~~~~~~~~g~~----r 91 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERA----FHPSFS--------PFRSNLTSGNC----R 91 (360)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH----HHHHhh--------hhhcccccCcc----c
Confidence 3445779999999999999999999999999999999998763110 001110 00000011111 0
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC-ChHHH-HHHHHHHHHcCCHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-NCDCI-GNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~-~~la~~~~~~g~~~~A~ 296 (546)
+.-..+ .+.....+++.....+.+.|-+..|+++.+-.+.++|. ++-.. +.+-....+.++++--+
T Consensus 92 L~~~~~------------eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li 159 (360)
T PF04910_consen 92 LDYRRP------------ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLI 159 (360)
T ss_pred cCCccc------------cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHH
Confidence 000000 01122346667788889999999999999999999998 66544 44444456778888777
Q ss_pred HHHHHHHh
Q 009045 297 KCFQDLIL 304 (546)
Q Consensus 297 ~~~~~al~ 304 (546)
+.++....
T Consensus 160 ~~~~~~~~ 167 (360)
T PF04910_consen 160 DFSESPLA 167 (360)
T ss_pred HHHHhHhh
Confidence 77776554
No 273
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.34 Score=55.48 Aligned_cols=257 Identities=10% Similarity=0.054 Sum_probs=150.7
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCc
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 326 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 326 (546)
..-..+...|+|..|..+|++++..+|+....+...-......|.+...+...+-.....++....+..++.--.
T Consensus 1454 ~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaa----- 1528 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAA----- 1528 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHH-----
Confidence 344456677999999999999999999888888877778888888888888887777666666666666654332
Q ss_pred cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH-----HHHHHHHHHhcCC-----
Q 009045 327 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS-----SGKCLEKAAKLEP----- 396 (546)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-----A~~~~~~al~~~p----- 396 (546)
.+.++++.-..+.. ..+-.+..+.. +|.+.....+-+. .++..+..+ +.|
T Consensus 1529 ---------------W~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~lsa~s 1588 (2382)
T KOG0890|consen 1529 ---------------WRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENLSACS 1588 (2382)
T ss_pred ---------------hhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhHHHhh
Confidence 25666665554433 11111122211 5555555433221 111111111 111
Q ss_pred ---CChhHHHHHHHHHH-HHhhhccCchhHHHHHHHHHHHHHhcCCC--CCCCcHHHHHHHHHHHHhcccHHHHHHHHHh
Q 009045 397 ---NCMSTRYAVAVSRI-KDAERSQEPTEQLSWAGNEMASILREGDP--VQIEPPIAWAGFAAVQKTHHEVAAAFETEEN 470 (546)
Q Consensus 397 ---~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 470 (546)
.....+-.+....+ .+. ......+..... ....+..-|.+....-....+..+-+-.+++
T Consensus 1589 ~~~Sy~~~Y~~~~kLH~l~el--------------~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RR 1654 (2382)
T KOG0890|consen 1589 IEGSYVRSYEILMKLHLLLEL--------------ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRR 1654 (2382)
T ss_pred ccchHHHHHHHHHHHHHHHHH--------------HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHH
Confidence 00011111110000 000 001111111100 0112223455554444444445555544444
Q ss_pred hc---------cchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 471 EL---------SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 471 ~l---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.+ +..-.+.|...|++....|.++.|..++-+|.+.. -+.++...|..+...|+...|+..+++.+++.
T Consensus 1655 s~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1655 SMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 22 23444779999999999999999999999998876 57889999999999999999999999999876
Q ss_pred ccc
Q 009045 542 CSS 544 (546)
Q Consensus 542 ~~~ 544 (546)
-.+
T Consensus 1733 ~~~ 1735 (2382)
T KOG0890|consen 1733 FPD 1735 (2382)
T ss_pred ccc
Confidence 443
No 274
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.15 E-value=0.024 Score=53.90 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=110.5
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------------------------CCCC---hHHHHHHHH
Q 009045 234 SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------------------------DPNN---CDCIGNLGI 284 (546)
Q Consensus 234 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~---~~~~~~la~ 284 (546)
.+..+|-+.+++..++.++..+|++..|.+.+++|+-. .+.| ..+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 35678999999999999999999999999999988532 1122 234556677
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC-
Q 009045 285 AYFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP- 362 (546)
Q Consensus 285 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p- 362 (546)
...+.|-+..|.++.+-.+.++|. ++-........|. .+.++++=-++.++.......
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~A--------------------Lrs~~y~~Li~~~~~~~~~~~~ 171 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYA--------------------LRSRQYQWLIDFSESPLAKCYR 171 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH--------------------HhcCCHHHHHHHHHhHhhhhhh
Confidence 788999999999999999999999 6655544444443 266777777777776554211
Q ss_pred ----CCHHHHHHHHHHHHHcCCh---------------HHHHHHHHHHHhcCCCC
Q 009045 363 ----KAAHIWANLANAYYLTGDH---------------RSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 363 ----~~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~al~~~p~~ 398 (546)
.-+..-+.++.+++..++- ++|...+.+|+...|.-
T Consensus 172 ~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 172 NWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 1345667788888888888 89999999999998854
No 275
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.12 E-value=0.13 Score=48.35 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=78.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
..|++.++.+|.+..+|..+........... ....-....-.+.-+.+|++|++.+|++...+..+-.+..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~---------~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~ 76 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQ---------SSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGE 76 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcccc---------ccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4577788888999999988887665321100 0001112333567889999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 377 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
+..+.++....+++++..+|++...|........
T Consensus 77 ~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 77 KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQ 110 (321)
T ss_pred HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 9999999999999999999999888876544333
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.12 Score=51.36 Aligned_cols=239 Identities=12% Similarity=0.054 Sum_probs=137.4
Q ss_pred HhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHH----------HHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 235 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCI----------GNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 235 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
++.+| ++..|..++..-...-.++-|...|-+.-.. +. .... ...+.+-.--|+|++|.+.|-.+-+
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence 44455 4889999999888888888888888765321 11 1111 2234444456899999988855432
Q ss_pred hCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~ 382 (546)
. .++.-+. .+.|+|-...+.++..-.-+.+ --.++.++|..+..+..|+
T Consensus 763 r---------DLAielr--------------------~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 763 R---------DLAIELR--------------------KKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred h---------hhhHHHH--------------------HhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222111 2667776666666543222221 3568899999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHH
Q 009045 383 SSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVA 462 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (546)
+|.++|.++-.... ..+.++.+-. + ..+..... ..|++...+-.+|..+...|.-+
T Consensus 814 ~A~~yY~~~~~~e~-~~ecly~le~--f-----------------~~LE~la~----~Lpe~s~llp~~a~mf~svGMC~ 869 (1189)
T KOG2041|consen 814 EAAKYYSYCGDTEN-QIECLYRLEL--F-----------------GELEVLAR----TLPEDSELLPVMADMFTSVGMCD 869 (1189)
T ss_pred HHHHHHHhccchHh-HHHHHHHHHh--h-----------------hhHHHHHH----hcCcccchHHHHHHHHHhhchHH
Confidence 99999987654322 1222222111 0 00111111 12445566778888999999999
Q ss_pred HHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009045 463 AAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 537 (546)
Q Consensus 463 ~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (546)
+|...|.+.-.+.... .....+.+|.+|++.-++-- -|.-....-..+.-+...++..+|++.++++
T Consensus 870 qAV~a~Lr~s~pkaAv------~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 870 QAVEAYLRRSLPKAAV------HTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHhccCcHHHH------HHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 9998887644433221 14455666777766555321 1221222222333345667777777777766
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.10 E-value=0.0012 Score=38.87 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEIL 181 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 181 (546)
+|..||.+|...|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999988764
No 278
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.06 E-value=0.34 Score=47.08 Aligned_cols=396 Identities=14% Similarity=0.096 Sum_probs=201.9
Q ss_pred HHhHhcCCCCcccccccCCC----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchh
Q 009045 112 DSALEFGVDADGDQSGLGTS----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEAD 187 (546)
Q Consensus 112 ~~al~~~~~~~~~~~~~g~~----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 187 (546)
++-|+.+|.+..+|..+-.- ...+..+.|++.+...|..+.+|.......++..+|+.-...|.+.+..--+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn---- 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN---- 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh----
Confidence 55677788877777654322 3477788999999999999999999999999999999999999998865211
Q ss_pred ccchhhHHHHHHHhhc-------------------cccccccC------------------CCccccccChhhHHHHHHH
Q 009045 188 IARPELLSLVQIHHAQ-------------------CLLPESSG------------------DNSLDKELEPEELEEILSK 230 (546)
Q Consensus 188 ~~~~~~~~~~~~~~~~-------------------~~~~~~~g------------------~~~~~~~~~~~~~~~A~~~ 230 (546)
-++ ...+... -.+....| -....++-++.+.+.-.+.
T Consensus 86 ---lDL---W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRri 159 (656)
T KOG1914|consen 86 ---LDL---WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRI 159 (656)
T ss_pred ---HhH---HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHH
Confidence 111 1111100 00011111 0011122233344444455
Q ss_pred HHHHHhcCcccHH-HHHH-----------HH--HHHHHcCChHHHHHHHHhhHhc-------CCC----C-------hHH
Q 009045 231 LKESMQSDTRQAV-VWNT-----------LG--LILLKSGRLQSSISVLSSLLAV-------DPN----N-------CDC 278 (546)
Q Consensus 231 ~~~al~~~p~~~~-~~~~-----------l~--~~~~~~g~~~~A~~~~~~al~~-------~p~----~-------~~~ 278 (546)
|++++..--.+.+ .|.. .| .+--+...|..|...++....+ +|. . .+.
T Consensus 160 Yqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~ 239 (656)
T KOG1914|consen 160 YQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVEL 239 (656)
T ss_pred HHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHH
Confidence 5555533222211 1100 00 0111222344444444433221 110 0 111
Q ss_pred HHHHHHHHHHcC------C--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcC----
Q 009045 279 IGNLGIAYFQSG------D--MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA---- 346 (546)
Q Consensus 279 ~~~la~~~~~~g------~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 346 (546)
|.++...-...+ . -..-.-.|++++..-+-.++.|+..+..+.. .++++...|+
T Consensus 240 W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~--------------~s~l~~~~~d~~~a 305 (656)
T KOG1914|consen 240 WKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIE--------------ISDLLTEKGDVPDA 305 (656)
T ss_pred HHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------hhHHHHHhcccccc
Confidence 222221111111 0 0112234455555555555555554444431 2333334443
Q ss_pred ---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCc
Q 009045 347 ---VNVAKECLLAALKADPK-AAHIWANLANAYYLTG---DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEP 419 (546)
Q Consensus 347 ---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~ 419 (546)
-+++..+|++++..--. +...++.++.--...- +++.-...+++.+.+...+....+..-...+.. .+-
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR----~eG 381 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR----AEG 381 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHH----hhh
Confidence 56778888887764322 3334444443332222 256666777777766544433222111111111 111
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH-HHHhcccHHHHHHHHHhhccchhhhHHh--hHHHHHHHhccHHHH
Q 009045 420 TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA-VQKTHHEVAAAFETEENELSKMEECAGA--GESAFLDQASAVNVA 496 (546)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~--~la~~~~~~g~~~~A 496 (546)
.. ..+..+............++..-|. -|...++.+-|+..|...+........+ .....+...++-..|
T Consensus 382 lk-------aaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 382 LK-------AARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HH-------HHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhH
Confidence 11 1112222111111111233333332 2456789999999999988755544433 334467788999999
Q ss_pred HHHHHHHHHh--CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 497 KECLLAALKA--DPK-AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 497 ~~~~~~al~~--~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
...|++++.. .|+ ...+|..+-..-..-|+...+++.=++-...++
T Consensus 455 R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 455 RALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 9999999987 443 356777777777888888888877776666554
No 279
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.069 Score=44.54 Aligned_cols=120 Identities=15% Similarity=0.131 Sum_probs=81.1
Q ss_pred HHHHHHHhhHhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccc
Q 009045 260 SSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTG 336 (546)
Q Consensus 260 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 336 (546)
+......+....++... -+-..++..+...|++++|+..++.++....+.. +..++...
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~--lk~l~~lR---------------- 131 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDEN--LKALAALR---------------- 131 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHH--HHHHHHHH----------------
Confidence 33444444444454432 2455678889999999999999999986433221 11121111
Q ss_pred cchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 337 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
++++..+.|.+++|+..+....... -.+..-...|.++...|+-++|+..|++++...++.
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 2444559999999999887644311 123445678999999999999999999999998554
No 280
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.97 E-value=0.0019 Score=37.10 Aligned_cols=32 Identities=16% Similarity=0.026 Sum_probs=29.4
Q ss_pred HHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 009045 479 AGAGESAFLDQASAVNVAKECLLAALKADPKA 510 (546)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 510 (546)
+++.+|.++...|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57889999999999999999999999999974
No 281
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.94 E-value=0.003 Score=55.85 Aligned_cols=66 Identities=11% Similarity=0.193 Sum_probs=60.2
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
..|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.++.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 567779999999999999999999999999999999999999999999999999999998877654
No 282
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.92 E-value=0.014 Score=42.80 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009045 226 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (546)
..+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..++++ ..+...+-.++..+|.-+.-...|++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 34667888899999999999999999999999999999999999998765 56666666666666665544444444
No 283
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.87 E-value=0.72 Score=47.82 Aligned_cols=214 Identities=16% Similarity=0.124 Sum_probs=132.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
++......+.......++.+|.....++...-+..... ...+......+..+.. .+..|++++|++
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~-~~~~l~ae~~aL~a~v-------------al~~~~~e~a~~ 479 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHS-RQGDLLAEFQALRAQV-------------ALNRGDPEEAED 479 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCccc-chhhHHHHHHHHHHHH-------------HHhcCCHHHHHH
Confidence 56666777888889999999999999987765443111 1111211112222221 345678899999
Q ss_pred HHHHHHhcCccc-----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC----CC--hHHHHHHHHHHHHcCCHH--HHH
Q 009045 230 KLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDP----NN--CDCIGNLGIAYFQSGDME--QSA 296 (546)
Q Consensus 230 ~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~--~~~~~~la~~~~~~g~~~--~A~ 296 (546)
..+.++..-|.+ ..++..+|.+.+-.|++++|..+.+.+.+... -. ..+....+.++..+|+.. +..
T Consensus 480 lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~ 559 (894)
T COG2909 480 LARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQE 559 (894)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999887754 45777899999999999999999999887732 22 234445577888889433 333
Q ss_pred HHHHHHH----hhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc----CCCCHH--
Q 009045 297 KCFQDLI----LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPKAAH-- 366 (546)
Q Consensus 297 ~~~~~al----~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~-- 366 (546)
..|...- ...|.........+.++.. .-+++.+..-..+.++. .|....
T Consensus 560 ~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~---------------------~~r~~~~~~ear~~~~~~~~~~~~~~~~~ 618 (894)
T COG2909 560 KAFNLIREQHLEQKPRHEFLVRIRAQLLRA---------------------WLRLDLAEAEARLGIEVGSVYTPQPLLSR 618 (894)
T ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHH---------------------HHHHhhhhHHhhhcchhhhhcccchhHHH
Confidence 3333222 2233333333333333331 11144444444444433 333222
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 367 -IWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 367 -~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
..+.|+.+++..|+.++|...+..+.....+.
T Consensus 619 ~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 619 LALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 23478999999999999999999887764443
No 284
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.83 E-value=0.0063 Score=58.78 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=88.9
Q ss_pred cChhhHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
...|+...|+.++..++...|... ....+|+.++...|-...|-..+.+++.+....+-.++.+|..|..+.+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 345666999999999999888654 3678899999999999999999999999998888999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~ 319 (546)
.|+.+++++|+++.....+-.+
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999998876555443
No 285
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.82 E-value=0.36 Score=46.45 Aligned_cols=94 Identities=11% Similarity=0.120 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
..-...|+.++...+.+...|........ +.+.+.+--..|.+++..+|+++..|..-+
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k---------------------k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA 146 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK---------------------KKKTYGEVKKIFAAMLAKHPNNPDLWIYAA 146 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH---------------------HhcchhHHHHHHHHHHHhCCCCchhHHhhh
Confidence 34566788999999999999888776665 666689999999999999999999999999
Q ss_pred HHHHHcCC-hHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 373 NAYYLTGD-HRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 373 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
.-.+..+. .+.|...|.++++.+|+++..|.....
T Consensus 147 ~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 147 KWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred hhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 88887776 999999999999999999988765443
No 286
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.78 E-value=0.12 Score=48.78 Aligned_cols=107 Identities=9% Similarity=0.016 Sum_probs=77.5
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc---------------------------ccccc
Q 009045 283 GIAYFQSGD-MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---------------------------GAGAN 334 (546)
Q Consensus 283 a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~---------------------------~~~~~ 334 (546)
|.-+++.|. -++|+..++.+++..+.+.......-......+.+.+. +....
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 445566676 78899999999998888775433222221111111111 12233
Q ss_pred cccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009045 335 TGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 390 (546)
Q Consensus 335 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (546)
+.-|.++...|+|.++.-+-.=..+++| ++.++..+|.++....+|++|..++..
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3457778899999999999999999999 799999999999999999999998865
No 287
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.75 E-value=0.0075 Score=38.73 Aligned_cols=43 Identities=9% Similarity=-0.164 Sum_probs=35.2
Q ss_pred HHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009045 479 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 521 (546)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 521 (546)
.+|.+|..+.+.|+|++|..+++.+++.+|+|..+......+-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 4678888999999999999999999999999988876655543
No 288
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.72 E-value=0.02 Score=49.87 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=76.4
Q ss_pred cCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcc---
Q 009045 164 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR--- 240 (546)
Q Consensus 164 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~--- 240 (546)
...+++|+..|.-|+-..--. .......+.++..++++|..+|+. ..+..-+..|+..|.+++.....
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~-----~~~~s~~A~l~LrlAWlyR~~~~~----~~E~~fl~~Al~~y~~a~~~e~~~~~ 160 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK-----KEKPSKKAGLCLRLAWLYRDLGDE----ENEKRFLRKALEFYEEAYENEDFPIE 160 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 446778888887777552111 223335567788888888888886 45556668888888888865432
Q ss_pred ---cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh-HHHHHHHH
Q 009045 241 ---QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-DCIGNLGI 284 (546)
Q Consensus 241 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~ 284 (546)
...+++.+|.+..+.|++++|+.+|.+++....... ..+..+|+
T Consensus 161 ~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 161 GMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 246788899999999999999999999887643322 34444443
No 289
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.72 E-value=0.71 Score=45.63 Aligned_cols=297 Identities=12% Similarity=0.035 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHH-HHHHcCCHHHHHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI-AYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 301 (546)
..+.+...|...+...|.....|...|..-.+.|..+.++++|++++.--|-....|..+-. +--..|+.+.-...|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 34556666667777777777777777777777777777777777777777766666654332 23345666666677777
Q ss_pred HHhhCCCCHHH---HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 009045 302 LILKDQNHPAA---LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL- 377 (546)
Q Consensus 302 al~~~p~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~- 377 (546)
|......+..+ |..+-... ...+++..-...|++.+++--.....++..=.=+..
T Consensus 140 A~~~vG~dF~S~~lWdkyie~e---------------------n~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFE---------------------NGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHhcccchhccHHHHHHHHHH---------------------hccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 77665443322 22222211 256677777777777776532222222211111111
Q ss_pred -----cCChHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHhhhccCchh----HHHH-----------HHHHHHH---
Q 009045 378 -----TGDHRSSGKCLEKAAKL--EPNCMSTRYAVAVSRIKDAERSQEPTE----QLSW-----------AGNEMAS--- 432 (546)
Q Consensus 378 -----~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~l~~~~~~~~~~~----~~~~-----------~~~~~~~--- 432 (546)
+-..+++...-...... .+......-.+ ...+........... .+.. ......+
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~-~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEEL-EIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHH-HHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 12223333322222211 00000000000 000000000000000 0000 0000000
Q ss_pred ---HHh----cCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc--hhhhHHhhHHHHHHHhccHHHHHHHHHHH
Q 009045 433 ---ILR----EGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK--MEECAGAGESAFLDQASAVNVAKECLLAA 503 (546)
Q Consensus 433 ---~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 503 (546)
.+. ...+........|..........|+++.....+.+.+-+ .....|...+......|+.+-|-..+..+
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 000 011122223345666666667778888888888776553 33466777777777777777777777766
Q ss_pred HHh-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 504 LKA-DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 504 l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.+. .|..+.++..-+.+-...|++..|...+++..+-+
T Consensus 358 ~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred hhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 664 35566677777777777778888888877777655
No 290
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=1.1 Score=47.27 Aligned_cols=228 Identities=16% Similarity=0.072 Sum_probs=137.3
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcc
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 327 (546)
+|.+....+-|++|...|++- .-+..+.. .+....+..+.|.++-+++ +.+..|..++...+
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL------ 1115 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQL------ 1115 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHH------
Confidence 466666777778888777762 11222221 1223445666666665554 34667777777776
Q ss_pred ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-hhHHHHHH
Q 009045 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC-MSTRYAVA 406 (546)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~ 406 (546)
+.|...+|++.|-++ +++..|.....+..+.|.|++-+.++..+-+..... .+.-...+
T Consensus 1116 ---------------~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1116 ---------------QGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFA 1175 (1666)
T ss_pred ---------------hcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 788899999988764 567778888888889999999999888877653322 12222222
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHH
Q 009045 407 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAF 486 (546)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~ 486 (546)
.....+.. ++...+. .|+.+ -....|.-++..+.|+.|.-.|.. ...|-.++..
T Consensus 1176 yAkt~rl~--------------elE~fi~-----gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~------vSN~a~La~T 1229 (1666)
T KOG0985|consen 1176 YAKTNRLT--------------ELEEFIA-----GPNVA-NIQQVGDRCFEEKMYEAAKLLYSN------VSNFAKLAST 1229 (1666)
T ss_pred HHHhchHH--------------HHHHHhc-----CCCch-hHHHHhHHHhhhhhhHHHHHHHHH------hhhHHHHHHH
Confidence 22111110 1111111 11222 244567777788888888777653 2345577778
Q ss_pred HHHhccHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 487 LDQASAVNVAKECLLAALKADP-------------------------KAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 487 ~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
+..+|+|..|+..-++|-...- -+++-+-.+...|...|-+++-+..++.++-
T Consensus 1230 LV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 8888888888888777633110 0123344455566777777777777766654
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.13 Score=41.93 Aligned_cols=77 Identities=6% Similarity=0.083 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC--C--hHHHHHHHHHHHHcCCHHHHHH
Q 009045 224 LEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN--N--CDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.++|+..|...-+..-.. .-+.+..|.+..+.|+...|+..|..+-...|- - -.+...-+.++...|-|++-..
T Consensus 74 ~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~s 153 (221)
T COG4649 74 TDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSS 153 (221)
T ss_pred chHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHH
Confidence 356666665554433222 224555666666666766777666665443321 1 1123333444555555555444
Q ss_pred HHH
Q 009045 298 CFQ 300 (546)
Q Consensus 298 ~~~ 300 (546)
..+
T Consensus 154 rve 156 (221)
T COG4649 154 RVE 156 (221)
T ss_pred Hhh
Confidence 433
No 292
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.68 E-value=0.0066 Score=45.42 Aligned_cols=105 Identities=12% Similarity=0.008 Sum_probs=53.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHh
Q 009045 157 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 236 (546)
Q Consensus 157 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~ 236 (546)
++.-++..|++-+|++..+..+...++.... ...+...|.++..++...-+-..+.--+-.++++|.++..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~---------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~ 72 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS---------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE 72 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch---------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc
Confidence 4677899999999999999999885543211 1223333333322222111112222333444444445444
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHh
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 270 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 270 (546)
+.|..+..++.+|.-+-....|++++...++++.
T Consensus 73 Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 73 LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4554444444444444444444444444444443
No 293
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=1.9 Score=49.81 Aligned_cols=295 Identities=13% Similarity=0.036 Sum_probs=168.1
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHH-HHHHcCCHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI-AYFQSGDMEQSAK 297 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~ 297 (546)
-..|++..|..+|++++..+|+....+...-......|.++..+...+-.....++...-++.+|. +-+..++++.-..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 356899999999999999999988878877778888899999999888877777766666666553 4477888887766
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH-------hcCCCCHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL-------KADPKAAHIWAN 370 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~~~ 370 (546)
+.. ..+-.+..+.. +|.++.....+. .=...+.++..+..+ .........|..
T Consensus 1540 ~l~---~~n~e~w~~~~-~g~~ll~~~~kD----------------~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~ 1599 (2382)
T KOG0890|consen 1540 YLS---DRNIEYWSVES-IGKLLLRNKKKD----------------EIATLDLIENSRELVIENLSACSIEGSYVRSYEI 1599 (2382)
T ss_pred hhh---cccccchhHHH-HHHHHHhhcccc----------------hhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHH
Confidence 654 22222222221 455544221100 000011111111111 001111122222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcH
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLEPNCM-----STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 445 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (546)
+-.++... +.+.-++... ...+++. +-|.+. +.....+....+. ..+.......+...........
T Consensus 1600 ~~kLH~l~-el~~~~~~l~---~~s~~~~s~~~sd~W~~R----l~~tq~s~~~~ep-ILa~RRs~l~~~~~~~~~~~~g 1670 (2382)
T KOG0890|consen 1600 LMKLHLLL-ELENSIEELK---KVSYDEDSANNSDNWKNR----LERTQPSFRIKEP-ILAFRRSMLDLRMRSNLKSRLG 1670 (2382)
T ss_pred HHHHHHHH-HHHHHHHHhh---ccCccccccccchhHHHH----HHHhchhHHHHhH-HHHHHHHHHHHhccccccchhH
Confidence 22222111 1111111111 1111111 111111 1111111111111 1111111112222224455677
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC-CC----------C----
Q 009045 446 IAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD-PK----------A---- 510 (546)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~---- 510 (546)
..|...|.+....|.++.|....-++.....+.+....|..+...|+-..|+..+++.++++ |+ .
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~ 1750 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLL 1750 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhh
Confidence 89999999999999999999999998888888899999999999999999999999999753 32 1
Q ss_pred --HHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHhc
Q 009045 511 --AHIWANLANAYYLTGDH--RSSGKCLEKVLMVYC 542 (546)
Q Consensus 511 --~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~ 542 (546)
..+...++......|+. +.-+.+|..+.++++
T Consensus 1751 i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1751 IFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 22344455555666664 245677888888776
No 294
>PRK10941 hypothetical protein; Provisional
Probab=96.58 E-value=0.027 Score=50.79 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+-.....+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999999999999999999999999876544443
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.57 E-value=0.015 Score=37.41 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
+.++.+|..++++|+|++|..+.+.++++.|++..+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34566777777777777777777777777777766543
No 296
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.45 E-value=0.011 Score=52.44 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=64.7
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
+.-..+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+++.+.|.+.+++.+....
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 33456789999999999999999999999999999999999999999999999999999999998877654
No 297
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=1 Score=43.98 Aligned_cols=242 Identities=10% Similarity=0.054 Sum_probs=131.7
Q ss_pred HHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccc
Q 009045 259 QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEG 338 (546)
Q Consensus 259 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 338 (546)
+...+.+.......|.++......+..+...|+.+.|+..+...+. +..... ...+++ .+|
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~---~~l~~f--------------E~a 310 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQV---KSLMVF--------------ERA 310 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHH---HHHHHH--------------HHH
Confidence 3444455555566888888888888888888888888888887776 111111 011111 123
Q ss_pred hHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHH--------cCChHHHHHHHHHHH---hcCCCChhHHHHHH
Q 009045 339 ACLDQASAVNVAKECLLAALKADPKAAHIWANLA-NAYYL--------TGDHRSSGKCLEKAA---KLEPNCMSTRYAVA 406 (546)
Q Consensus 339 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~--------~g~~~~A~~~~~~al---~~~p~~~~~~~~l~ 406 (546)
.+..-..+|..|-..+....+...-....|..++ .|+.. .|+-++|..+++... ...|++...-.
T Consensus 311 w~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~--- 387 (546)
T KOG3783|consen 311 WLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK--- 387 (546)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---
Confidence 3333666788888888887776554444444444 33322 234444444443332 22222211110
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHH--HHHHHHHHHH-----hcccHHHHHHHHHh-hccchhh-
Q 009045 407 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI--AWAGFAAVQK-----THHEVAAAFETEEN-ELSKMEE- 477 (546)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~-----~~~~~~~A~~~~~~-~l~~~~~- 477 (546)
...+ ...+...... ..+..+. .+..++.++. ...+..+....+.. ..++.+.
T Consensus 388 ---------------f~~R---Kverf~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~ 448 (546)
T KOG3783|consen 388 ---------------FIVR---KVERFVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDE 448 (546)
T ss_pred ---------------HHHH---HHHHHhcccc-ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHH
Confidence 0000 1111111111 1111111 1222332222 11222323333332 2322222
Q ss_pred -hHHhhHHHHHHHhccHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHh
Q 009045 478 -CAGAGESAFLDQASAVNVAKECLLAALKAD---PK----AAHIWANLANAYYLTGD-HRSSGKCLEKVLMVY 541 (546)
Q Consensus 478 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~ 541 (546)
--++-+|.++..+|+-..|..+|..+++.. .. -|.++|.+|..|..+|. ..++..++.+|-+-+
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 224578899999999999999999888531 11 27899999999999999 999999999997755
No 298
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.36 E-value=1.1 Score=43.41 Aligned_cols=94 Identities=15% Similarity=0.136 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-MEQSAKCFQDLI 303 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al 303 (546)
..-...|+.+....+.+...|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 4556788899999998999999988888888889999999999999999999999998888887776 889999999999
Q ss_pred hhCCCCHHHHHHHHH
Q 009045 304 LKDQNHPAALINYAA 318 (546)
Q Consensus 304 ~~~p~~~~~~~~l~~ 318 (546)
+.+|+.+..|...-.
T Consensus 168 R~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFR 182 (568)
T ss_pred hcCCCChHHHHHHHH
Confidence 999999887765433
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.31 E-value=0.036 Score=44.90 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=66.1
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
+..++.+.+...+..+--+.|+.+..-..-|.+++..|+|.+|+..|+.+....|..+.+--.++.+++.+|+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 345677889899988888899999999999999999999999999999998888999988899999998888765
No 300
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.24 E-value=1 Score=48.37 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=80.4
Q ss_pred ccccChhhHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHc----C---ChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 216 DKELEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKS----G---RLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 216 ~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
+..+....|++|+..|++.....|.. .++.+..|..+..+ | .+++|+..|++.. -.|.-+--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHH
Confidence 45678899999999999999999876 45788888877653 2 5778888887754 356667778999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
|.++|++++-+++|.-+++..|.++..-.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 99999999999999999999998886543
No 301
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.20 E-value=0.26 Score=37.35 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=65.6
Q ss_pred HHHHHHHH--HHhcccHHHHHHHHHhhccc--------------hhhhHHhhHHHHHHHhccHHHHHHHHHHHH------
Q 009045 447 AWAGFAAV--QKTHHEVAAAFETEENELSK--------------MEECAGAGESAFLDQASAVNVAKECLLAAL------ 504 (546)
Q Consensus 447 ~~~~l~~~--~~~~~~~~~A~~~~~~~l~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al------ 504 (546)
+|..|+.. ....|.+++|...+.++++. .+...+-.|+..+..+|+|++++..-++++
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 34444433 34556788888888775541 111335578889999999988777766666
Q ss_pred -HhCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 505 -KADPKAAHIW----ANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 505 -~~~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
+++.+....| ++.|..+..+|+.++|+..|+++-+++.
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 4566665544 6789999999999999999999988764
No 302
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.13 E-value=0.87 Score=40.15 Aligned_cols=212 Identities=12% Similarity=0.164 Sum_probs=128.3
Q ss_pred CchHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHHhccc----chhccchhhHHHHHHHhhc
Q 009045 132 SSSREEKGLVHVARKMPKNA----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRC----EADIARPELLSLVQIHHAQ 203 (546)
Q Consensus 132 ~~~~a~~~~~~~l~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~ 203 (546)
....|...|++++++.+... .++-.+-.+++++|+|++-...|.+.+..-... ............+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS----- 116 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS----- 116 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh-----
Confidence 44777788999999888754 466677889999999999999999887652110 00000000000000
Q ss_pred cccccccCCCccccccChhhHHHHHHHHHHHHhc--CcccHHHHH----HHHHHHHHcCChHHHHHHHHhhHhcCC----
Q 009045 204 CLLPESSGDNSLDKELEPEELEEILSKLKESMQS--DTRQAVVWN----TLGLILLKSGRLQSSISVLSSLLAVDP---- 273 (546)
Q Consensus 204 ~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~al~~~p---- 273 (546)
...+.+--...|+..+.. +..+...|+ .+|.+|+..|.|.+-.+.+++.-....
T Consensus 117 ----------------tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 117 ----------------TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ----------------hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 111122222333322221 222333443 589999999999888887777654322
Q ss_pred --------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhc
Q 009045 274 --------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS 345 (546)
Q Consensus 274 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (546)
.-.++|..-...|..+.+..+-...|++++.+...-+..+ .+|.+..+- |..+.+.|
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECG--------------GKMHlreg 245 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECG--------------GKMHLREG 245 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcC--------------Cccccccc
Confidence 1234566667788888888888889999998765443332 244443321 55566889
Q ss_pred CHHHHHHHHHHHHhcCCC-----CHHH--HHHHHHHHHHcC
Q 009045 346 AVNVAKECLLAALKADPK-----AAHI--WANLANAYYLTG 379 (546)
Q Consensus 346 ~~~~A~~~~~~al~~~p~-----~~~~--~~~l~~~~~~~g 379 (546)
+|++|-..|-.+++.... ...+ |..|+..+...|
T Consensus 246 ~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 246 EFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 999999988888876433 2222 445566666554
No 303
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.12 E-value=0.0096 Score=33.56 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCC
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDP 273 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 273 (546)
+++.+|.++...|++++|+..|++++++.|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555544
No 304
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.11 E-value=0.053 Score=40.70 Aligned_cols=91 Identities=12% Similarity=0.154 Sum_probs=57.1
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHH
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGD-----------MEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
+.-++..|++-+|++..+..+...+++. ..+..-|.++..+.. .-.++++|.++..+.|.....++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 4455666666666666666666655444 334444555543321 23478889999999998877777
Q ss_pred HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc
Q 009045 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 360 (546)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 360 (546)
.+|.-+- ....|++++.-.++++.+
T Consensus 83 ~la~~l~---------------------s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLG---------------------SVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhh---------------------hHHHHHHHHHHHHHHhcc
Confidence 7776543 234477777777777764
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.11 E-value=0.16 Score=41.23 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+..+..+-...++.+++...+..+--+.|..+..-..-|.++...|+|.+|+..++.+....|..+..--.++.++
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 33344444444455555555555554555555555555555555555555555555554444444443333333333
No 306
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.08 E-value=1.9 Score=43.53 Aligned_cols=60 Identities=8% Similarity=0.123 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHh----------------------cCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLA----------------------VDPNNCDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
..++.++|..+..+..|++|.++|.+.-. .-|++...+-.+|..+...|.-++|++.|
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 34677777777777777777777665421 13555555556666666666666666655
Q ss_pred HH
Q 009045 300 QD 301 (546)
Q Consensus 300 ~~ 301 (546)
-+
T Consensus 876 Lr 877 (1189)
T KOG2041|consen 876 LR 877 (1189)
T ss_pred Hh
Confidence 43
No 307
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=1.4 Score=43.48 Aligned_cols=124 Identities=19% Similarity=0.093 Sum_probs=71.2
Q ss_pred HHHHHHhhHhcCCCChHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccc
Q 009045 261 SISVLSSLLAVDPNNCDCIGN--LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEG 338 (546)
Q Consensus 261 A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 338 (546)
++..+...+.+++.++..+.. +...+...+....+.-.+..++..+|.+..+..+++..+.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale----------------- 112 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALE----------------- 112 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHH-----------------
Confidence 555555555566666555333 3555556666666666666677777777666666666655
Q ss_pred hHHHhhcC-HHHHHHHHHHHHhcCCCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 339 ACLDQASA-VNVAKECLLAALKADPKAAHIWANL------ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 339 ~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
..|. +.-+....+.+....|.+......+ +.....+|+..++.....++..+.|+++.....+
T Consensus 113 ----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 113 ----LDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred ----HhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 2222 3333333444666666655444333 6666666666666677777777766665444333
No 308
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.01 E-value=0.12 Score=37.89 Aligned_cols=48 Identities=25% Similarity=0.244 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 351 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 351 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 334455555555555555555555555555555555555555555444
No 309
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.00 E-value=0.013 Score=32.93 Aligned_cols=32 Identities=28% Similarity=0.559 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
.++..+|.++...|++++|+..|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 57889999999999999999999999998875
No 310
>PRK10941 hypothetical protein; Provisional
Probab=95.89 E-value=0.12 Score=46.65 Aligned_cols=61 Identities=13% Similarity=0.013 Sum_probs=48.3
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 403 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 403 (546)
+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+..
T Consensus 193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 7777888888888888888888877788888888888888888888888888887776554
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.86 E-value=0.19 Score=42.41 Aligned_cols=103 Identities=16% Similarity=0.024 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINY 316 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 316 (546)
..++..+|..|.+.|++++|++.|.++...... ..+.+..+..+.+..+++.....+..++-..-.. ++. ..+.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~-~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWE-RRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHH-HHHH
Confidence 457889999999999999999999998876433 2567888999999999999999999998765332 222 2222
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 361 (546)
-.++. |......++|..|...|-.++...
T Consensus 115 lk~~~----------------gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYE----------------GLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHH----------------HHHHHHhchHHHHHHHHHccCcCC
Confidence 23332 444456777777777777665443
No 312
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.83 E-value=0.15 Score=44.56 Aligned_cols=99 Identities=13% Similarity=0.195 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHHHHHHhc----C-c--ccHHHHHHHHHHHHHcCChHH-------HHHHHHhhHhcCC------CChHHH
Q 009045 220 EPEELEEILSKLKESMQS----D-T--RQAVVWNTLGLILLKSGRLQS-------SISVLSSLLAVDP------NNCDCI 279 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~----~-p--~~~~~~~~l~~~~~~~g~~~~-------A~~~~~~al~~~p------~~~~~~ 279 (546)
....+++|++.|.-|+-. . + .-+..+..+|.+|...|+.+. |+..|.+++.... +...+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345678888888777632 1 1 235688889999999999554 5555555554422 225688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHH
Q 009045 280 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHP-AALINYAA 318 (546)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~ 318 (546)
+.+|.++.+.|++++|.++|.+++....... .....++.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 9999999999999999999999997544333 24444443
No 313
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.82 E-value=1.2 Score=39.30 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=93.4
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHcCChHHHHHHHHhhHhc-----CCCChH-HHHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAV----VWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNNCD-CIGNLGIAYFQ 288 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~-~~~~la~~~~~ 288 (546)
+...+.++|+..|++++++.+...+ ++-.+..+++++|+|++-...|++.+.. ..+..+ ....+-..-..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 4566889999999999999886543 5666788899999999999988887653 111111 11111111111
Q ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC----
Q 009045 289 SGDMEQSAKCFQDLILK--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP---- 362 (546)
Q Consensus 289 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---- 362 (546)
..+.+--...|+..+.. +..+...| ...+..+|.++...+.|.+-.+.+++.-....
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLW-----------------FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLW-----------------FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceee-----------------eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 22222222333332221 11111112 12223345555566666666555554433211
Q ss_pred --------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 009045 363 --------KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 363 --------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
.-.++|..-...|-.+.+-.+-...|++++.+...-+..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 123455556677888888888888899998876554443
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.80 E-value=0.025 Score=34.40 Aligned_cols=31 Identities=32% Similarity=0.319 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 512 HIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
.++.++|.+|...|++++|..++++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 5678889999999999999999999888764
No 315
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.35 Score=47.48 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCcccHHHHHH--HHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-H
Q 009045 226 EILSKLKESMQSDTRQAVVWNT--LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD-L 302 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-a 302 (546)
-++..+...+..++.++..+.. +...+...+....+...+..++..+|++..+..+|+......|..-.+...+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3555666666677877776443 477778889999999999999999999999999999999888877776666655 8
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 381 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 381 (546)
....|++......+..++. ++.+...+|+..++.....++..+.|.++.+...+.....+...+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~ 192 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQ---------------LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW 192 (620)
T ss_pred HhcCcchHHHHhhHHHHHH---------------HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence 8889999888776655554 466667899999999999999999999877666555554444443
No 316
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.62 E-value=0.041 Score=52.10 Aligned_cols=127 Identities=9% Similarity=0.086 Sum_probs=94.5
Q ss_pred ccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHH
Q 009045 216 DKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 216 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 295 (546)
.+.+..|+...|-..+..+++..|.++......+.++..+|.|+.+...+.-+-..-..-..+...+-+..+.+|++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34567888899999999999999999999999999999999999999888766555444455666666778889999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
...-.-.+.-.-.+++....-+. ...++|-++++...+++.+.++|.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~---------------------sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAG---------------------SADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecc---------------------cHHHHhHHHHHHHHHHHHhccCCh
Confidence 88887777655444443321111 122667778888888888877765
No 317
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.55 E-value=0.026 Score=48.02 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=55.3
Q ss_pred HhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 342 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
.+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4788999999999999999999999999999999999999999999999999999875
No 318
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.46 E-value=0.024 Score=48.20 Aligned_cols=56 Identities=20% Similarity=0.366 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 275 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 275 (546)
+.++.+.|.+.|.+++..-|+....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44445555555555555555555555555555555555555555555555555443
No 319
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.46 E-value=3.1 Score=41.40 Aligned_cols=171 Identities=12% Similarity=0.016 Sum_probs=85.3
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhhhccCchh
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM-STRYAVAVSRIKDAERSQEPTE 421 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~l~~~~~~~~~~~ 421 (546)
..|+++...-.|++++-......+.|...+......|+.+-|-..+.++.++.-... ..+..- ..+.+... ...
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~--a~f~e~~~---n~~ 383 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE--ARFEESNG---NFD 383 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH--HHHHHhhc---cHH
Confidence 566666666667666666666666666666666666666666666666665543322 211111 11111110 001
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHH---HHHHhhccchh-----hhHHhhHHH-HHHHhcc
Q 009045 422 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAF---ETEENELSKME-----ECAGAGESA-FLDQASA 492 (546)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~l~~~~-----~~~~~~la~-~~~~~g~ 492 (546)
....+...+ ... .|....+-..........|+.+.+. ..+........ ...+...+. .+.-.++
T Consensus 384 ~A~~~lq~i---~~e----~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 384 DAKVILQRI---ESE----YPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred HHHHHHHHH---Hhh----CCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence 111111111 011 1233334444444555555555555 22222111100 011122222 3445667
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 009045 493 VNVAKECLLAALKADPKAAHIWANLANAYYLTG 525 (546)
Q Consensus 493 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 525 (546)
.+.|...+.++++..|++-..+..+-.+....+
T Consensus 457 ~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 457 ADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 888999999999999988877777766655444
No 320
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=1.7 Score=42.86 Aligned_cols=159 Identities=14% Similarity=0.073 Sum_probs=110.4
Q ss_pred ccChhhHHHHHHHHHHHHhc------------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------------
Q 009045 218 ELEPEELEEILSKLKESMQS------------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-------------- 271 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------- 271 (546)
+-....|++|...|.-++.. .|-+...+..++.++..+|+.+-|.....++|-.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 44567889999999888654 4566889999999999999999988888877531
Q ss_pred -------CCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhCccccccccccccchH
Q 009045 272 -------DPNNCDC---IGNLGIAYFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGAC 340 (546)
Q Consensus 272 -------~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 340 (546)
.|.|-.. ++..-..+.+.|-+..|.++.+-.++++|. ++-+...+..+|..
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL------------------ 389 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL------------------ 389 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH------------------
Confidence 2333322 233344556789999999999999999998 77776666665542
Q ss_pred HHhhcCHHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCC
Q 009045 341 LDQASAVNVAKECLLAA-----LKADPKAAHIWANLANAYYLTGD---HRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 341 ~~~~~~~~~A~~~~~~a-----l~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~ 397 (546)
+..+|+=-|+.++.. +..-|+ ...-..++..|..... -..|...+.+|+...|.
T Consensus 390 --rareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 390 --RAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred --HHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 455555555555544 233343 2333455666666555 56788889999988884
No 321
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.29 E-value=0.22 Score=38.77 Aligned_cols=77 Identities=21% Similarity=0.135 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCChHHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK-ADPK-AAHIWANLANAYYLTGDHRSSGK 386 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 386 (546)
.....++++.++... ....+..+.+.+++..++ -.|. .-+..+.|+..+++.++|++++.
T Consensus 31 s~~s~f~lAwaLV~S------------------~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~ 92 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRS------------------RDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLR 92 (149)
T ss_pred hHHHHHHHHHHHHcc------------------cchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHH
Confidence 345567777777632 145667889999999997 4554 56678899999999999999999
Q ss_pred HHHHHHhcCCCChhHHH
Q 009045 387 CLEKAAKLEPNCMSTRY 403 (546)
Q Consensus 387 ~~~~al~~~p~~~~~~~ 403 (546)
+.+..++..|++..+..
T Consensus 93 yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 93 YVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHhhCCCcHHHHH
Confidence 99999999999986653
No 322
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.25 E-value=4.6 Score=42.13 Aligned_cols=366 Identities=15% Similarity=0.095 Sum_probs=181.6
Q ss_pred HHHHHHHHHHhCCC---C-HHHHHHH--HHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccc
Q 009045 136 EEKGLVHVARKMPK---N-AHAHFLL--GLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 209 (546)
Q Consensus 136 a~~~~~~~l~~~p~---~-~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (546)
|...+++.++.--. . ....+.+ ...+...+++..|++.++......-.. ..+... +.+....+.+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~----~d~~~~--v~~~l~~~~l~-- 189 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR----GDPAVF--VLASLSEALLH-- 189 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc----CCHHHH--HHHHHHHHHHH--
Confidence 55666666654333 2 2222222 223333479999999999998874211 022221 22222222222
Q ss_pred cCCCccccccChhhHHHHHHHHHHHHhc------C----cccHHHHHHHHH--HHHHcCChHHHHHHHHhhH---hc---
Q 009045 210 SGDNSLDKELEPEELEEILSKLKESMQS------D----TRQAVVWNTLGL--ILLKSGRLQSSISVLSSLL---AV--- 271 (546)
Q Consensus 210 ~g~~~~~~~~~~~~~~~A~~~~~~al~~------~----p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al---~~--- 271 (546)
+..+..+.+++.++++... + +....+|..+-. ++...|+++.+...+++.- ..
T Consensus 190 ---------l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~ 260 (608)
T PF10345_consen 190 ---------LRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKK 260 (608)
T ss_pred ---------hcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 2333346666666665321 1 112334444333 4566777767666554432 11
Q ss_pred CC-------C---------------C--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----
Q 009045 272 DP-------N---------------N--------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP----- 310 (546)
Q Consensus 272 ~p-------~---------------~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----- 310 (546)
.+ + . .-++..-|......|..++|.++++++++.-.+..
T Consensus 261 ~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~ 340 (608)
T PF10345_consen 261 SPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPS 340 (608)
T ss_pred CccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCC
Confidence 11 0 0 01233445666677777799999988886421111
Q ss_pred ------------HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC---CC------CHHHHH
Q 009045 311 ------------AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD---PK------AAHIWA 369 (546)
Q Consensus 311 ------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~ 369 (546)
..|...-.++ .....+.+..-.+++..|......+.... |. .+..++
T Consensus 341 ~~~~sl~~~~~~~~~~~~l~~~------------~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~y 408 (608)
T PF10345_consen 341 APSESLSEASERIQWLRYLQCY------------LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHY 408 (608)
T ss_pred CCCcCHHHHHHhHHHHHHHHHH------------HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHH
Confidence 1111111111 11223555567889999988888776653 22 467889
Q ss_pred HHHHHHHHcCChHHHHHHHH--------HHHhcCCCChhHHHH---HHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCC
Q 009045 370 NLANAYYLTGDHRSSGKCLE--------KAAKLEPNCMSTRYA---VAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 438 (546)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~--------~al~~~p~~~~~~~~---l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (546)
..|..+...|+.+.|...|. .+....+.+....+. +.............. . .+...+....
T Consensus 409 L~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~-~-------~~~~l~~~i~ 480 (608)
T PF10345_consen 409 LLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSE-S-------ELNELLEQIE 480 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhh-h-------HHHHHHHhcC
Confidence 99999999999999999998 333444443322221 111111111111100 0 1223333222
Q ss_pred CCCCCcHH----HH-HHHHHHHH--hcccHHHHHHHHHhhccch---------hhhHHhhHHHHHHHhccHHHHHHHHHH
Q 009045 439 PVQIEPPI----AW-AGFAAVQK--THHEVAAAFETEENELSKM---------EECAGAGESAFLDQASAVNVAKECLLA 502 (546)
Q Consensus 439 ~~~~~~~~----~~-~~l~~~~~--~~~~~~~A~~~~~~~l~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~ 502 (546)
+...+.+. .| ..+-..+. ..-...++...+...++.. -..++..++..++ .|+..+.......
T Consensus 481 p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~ 559 (608)
T PF10345_consen 481 PLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSAR 559 (608)
T ss_pred ccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 22111111 12 22111111 1112224444444333322 1122445555555 6777776666666
Q ss_pred HHHhC---CCCHH-HHH-----HHHHHHHhcCChHHHHHHHHHHHH
Q 009045 503 ALKAD---PKAAH-IWA-----NLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 503 al~~~---p~~~~-~~~-----~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
+.... |+... .|. .+...+...|+.++|.....+.-.
T Consensus 560 a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 560 AFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 66543 33333 332 455668889999999998877654
No 323
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.23 E-value=0.21 Score=53.84 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=115.6
Q ss_pred ChhhHHHHHH------HHHH-HHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------CCCChHHHHHHHH
Q 009045 220 EPEELEEILS------KLKE-SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGI 284 (546)
Q Consensus 220 ~~~~~~~A~~------~~~~-al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~ 284 (546)
..|.+.+|.+ .+.. .-.+.|.....+..++.++.+.|++++|+..-.++.-+ .|+....+.+++.
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 4455665555 5553 33457888899999999999999999999998887654 3455778889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 285 AYFQSGDMEQSAKCFQDLILK--------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 285 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
..+..++...|...+.++..+ .|.-.....++..++. ..++++.|+.+.+.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~---------------------~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL---------------------GVEEADTALRYLES 1082 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh---------------------hHHHHHHHHHHHHH
Confidence 999999999999999988765 2333334455555544 67889999999999
Q ss_pred HHhcCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 357 ALKADPK--------AAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 357 al~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
|+..... ....+..+++++..++++..|+...+....+
T Consensus 1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9885322 4566777888888888888888777766654
No 324
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.22 E-value=0.44 Score=37.18 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHHcC---ChHHHHHHHHhhHh-cCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 009045 241 QAVVWNTLGLILLKSG---RLQSSISVLSSLLA-VDPN-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 315 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 315 (546)
.....++++.++.... +..+.+.+++..++ -.|. ..+..+.|+..++++++|+.++.+.+..++..|++..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3567888999988765 45678889999986 4453 46788999999999999999999999999999999887643
Q ss_pred H
Q 009045 316 Y 316 (546)
Q Consensus 316 l 316 (546)
.
T Consensus 111 k 111 (149)
T KOG3364|consen 111 K 111 (149)
T ss_pred H
Confidence 3
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.22 E-value=0.12 Score=41.21 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
..++.+++...+..+--+.|+.+..-..-|.+++..|+|.+|+..|+...+..+..+.+.-.++.++..+|+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 34566888888888878889999988899999999999999999999988888787888888888888888754
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.22 E-value=0.051 Score=32.95 Aligned_cols=30 Identities=33% Similarity=0.248 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 180 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 180 (546)
..++..+|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457899999999999999999999999987
No 327
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=1.9 Score=42.17 Aligned_cols=255 Identities=13% Similarity=0.042 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
+...+.+.......|+++...+..+.++...|+.+.|+..+...+...-. ..-.++.+|.++.-+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 55556666666788999999999999999999988899999988871111 1345778899999999999999999988
Q ss_pred HhhCCCCHHHHHHHH-HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHH---HhcCCCCHH---HHHHHHHHH
Q 009045 303 ILKDQNHPAALINYA-ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA---LKADPKAAH---IWANLANAY 375 (546)
Q Consensus 303 l~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a---l~~~p~~~~---~~~~l~~~~ 375 (546)
.....-....+..++ .+++.. . ..+....|+-++|-.+++.. +...|.+.. .....+.-+
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~-~------------~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf 396 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQN-W------------EVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERF 396 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhcc-H------------HHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHH
Confidence 776543333344443 333210 0 11111233444444444433 233333221 122223333
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHH
Q 009045 376 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE-PPIAWAGFAAV 454 (546)
Q Consensus 376 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 454 (546)
...+. -.+...+. .|-...+++..+...+. .+.. . .+..........+.+ ....++.+|.+
T Consensus 397 ~~~~~-~~~~~~la-----~P~~El~Y~Wngf~~~s-----~~~l---~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~ 458 (546)
T KOG3783|consen 397 VKRGP-LNASILLA-----SPYYELAYFWNGFSRMS-----KNEL---E----KMRAELENPKIDDSDDEGLKYLLKGVI 458 (546)
T ss_pred hcccc-cccccccc-----chHHHHHHHHhhcccCC-----hhhH---H----HHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 33321 00000000 01111111111111100 0000 0 011111111111222 22346788999
Q ss_pred HHhcccHHHHHHHHHhhccc---------hhhhHHhhHHHHHHHhcc-HHHHHHHHHHHHHhCCCC
Q 009045 455 QKTHHEVAAAFETEENELSK---------MEECAGAGESAFLDQASA-VNVAKECLLAALKADPKA 510 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~~---------~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 510 (546)
+...|+-..|...+...++. ..+.++|.+|..+...+. ..++.+++.+|-+...++
T Consensus 459 lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 459 LRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 99999999998888775532 233678999999999998 999999999998876443
No 328
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=1.1 Score=42.23 Aligned_cols=163 Identities=14% Similarity=0.116 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC-
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLK------------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD- 291 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~- 291 (546)
.++++.=.+.+..+|+...+|+..=.++.. +.-+++-+.+...+++.+|+...+|+.+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 677888888888999888777765444332 2346677888889999999999999999999987764
Q ss_pred -HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 292 -MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 292 -~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
+..-++..+++++.+|.+..+|...-.+.... ........+-+++..+++..++.+..+|..
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~-----------------~~~~~~~~~El~ftt~~I~~nfSNYsaWhy 188 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA-----------------ERSRNLEKEELEFTTKLINDNFSNYSAWHY 188 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHH-----------------hcccccchhHHHHHHHHHhccchhhhHHHH
Confidence 68889999999999999999987666555421 112234677788999999999999999998
Q ss_pred HHHHHHH------cCC------hHHHHHHHHHHHhcCCCChhHHHH
Q 009045 371 LANAYYL------TGD------HRSSGKCLEKAAKLEPNCMSTRYA 404 (546)
Q Consensus 371 l~~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~ 404 (546)
...++.. .|+ ...-+..-..++-.+|++..+|+.
T Consensus 189 Rs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 189 RSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 8877763 231 234455666777789999887764
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.14 E-value=0.14 Score=48.75 Aligned_cols=125 Identities=14% Similarity=0.027 Sum_probs=99.5
Q ss_pred HHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccc
Q 009045 253 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAG 332 (546)
Q Consensus 253 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 332 (546)
+..|+.-.|-.-...++...|.++......+.+...+|+|+.+...+..+-..-.....+..-+-..+
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~------------ 367 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL------------ 367 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh------------
Confidence 45688888988899999999999999999999999999999999888766554333333332222222
Q ss_pred cccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 333 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 333 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
..+|++++|.....-.+...-+++++....+.....+|-++++..++++.+.++|..
T Consensus 368 ---------~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 368 ---------HGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred ---------hchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 278999999999998888777778877777777788899999999999999998754
No 330
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.95 E-value=0.37 Score=36.56 Aligned_cols=106 Identities=16% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHHHHH--HHHHcCChhHHHHHHHHHHHHhcccchhcc--chhhHHHHHHHhhccccccccCCCccccccChhhHHHH
Q 009045 152 HAHFLLGL--MYQRLGQPLKAVSSYEKAEEILLRCEADIA--RPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 227 (546)
Q Consensus 152 ~~~~~lg~--~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 227 (546)
.+|..|+. -.+.-|-|++|...++++++....-+.... +..+. +.+|-.++.++..+|++ +++
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFD--A~chA~Ls~A~~~Lgry-----------~e~ 74 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFD--AFCHAGLSGALAGLGRY-----------DEC 74 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHH--HHHHHHHHHHHHHTT-H-----------HHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHH--HHHHHHHHHHHHhhccH-----------HHH
Confidence 34444443 445678999999999999998543222111 12222 34455555555555554 776
Q ss_pred HHHHHHHHh-------cCcccHH----HHHHHHHHHHHcCChHHHHHHHHhhHh
Q 009045 228 LSKLKESMQ-------SDTRQAV----VWNTLGLILLKSGRLQSSISVLSSLLA 270 (546)
Q Consensus 228 ~~~~~~al~-------~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~ 270 (546)
+..-.+++. ++.+... +.+..|..+...|+.++|+..|+.+-+
T Consensus 75 L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 75 LQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 666655553 3333322 344566677777777777777776644
No 331
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.82 E-value=0.1 Score=50.27 Aligned_cols=93 Identities=16% Similarity=0.013 Sum_probs=73.1
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 288 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 288 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
..+....|+..|.++++..|.....+.+.+.+++.++ -.|+.-.|+..+..+++++|....+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRk------------------W~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRK------------------WRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhh------------------ccccHHHHHHhHHhhccCChHHHHH
Confidence 3445667888888888888888888888877776431 2456677888888888888888889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
|+.|+.++..++++.+|+.+...+....|.+
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 9999999999999999988888877777744
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.65 E-value=0.72 Score=36.88 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
+......-...++.+++...+...--+.|+.+.+-..-|.++...|+|.+|+..++......+..+...-.++.++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 3334444444666666666666666666666666666666666666666666666666555444443333333333
No 333
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.51 E-value=0.19 Score=48.40 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=82.0
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 294 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 294 (546)
.+..+.+..++..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++.|+.++..++++.+
T Consensus 384 ~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 384 GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred hhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence 34567789999999999999999999999999998875 566678888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCH
Q 009045 295 SAKCFQDLILKDQNHP 310 (546)
Q Consensus 295 A~~~~~~al~~~p~~~ 310 (546)
|+.+...+....|.+.
T Consensus 464 al~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 464 ALSCHWALQMSFPTDV 479 (758)
T ss_pred hhhhHHHHhhcCchhh
Confidence 9999988888888554
No 334
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.51 E-value=0.086 Score=47.16 Aligned_cols=90 Identities=17% Similarity=0.250 Sum_probs=77.1
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN-LGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
.|.++-...|+++..|...+..-...|-+.+--..|.+++..+|.+++.|.. -+.-+...++++.+...|.++++++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3445555678899999998888888899999999999999999999999987 566678899999999999999999999
Q ss_pred CHHHHHHHHHH
Q 009045 309 HPAALINYAAL 319 (546)
Q Consensus 309 ~~~~~~~l~~~ 319 (546)
++..|...-..
T Consensus 175 ~p~iw~eyfr~ 185 (435)
T COG5191 175 SPRIWIEYFRM 185 (435)
T ss_pred CchHHHHHHHH
Confidence 99888765443
No 335
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=3.2 Score=39.29 Aligned_cols=139 Identities=16% Similarity=0.176 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC----CHHHHHH
Q 009045 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR--LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG----DMEQSAK 297 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~ 297 (546)
+++-+.+...+++.+|+...+|+.+..++.+.+. +..=+....++++.+|.+..+|...-.+..... ...+-++
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 4788888999999999999999999999987764 678899999999999999888876655554332 3567788
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
+..+++.-++.|..+|.....++.....+..... .........-++....++-.+|++..+|+..
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~---------~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN---------FMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHHHHhccccccCc---------cCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 8899999999999999988888764433221100 0011124556677778888899999888763
No 336
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.41 E-value=0.12 Score=46.27 Aligned_cols=89 Identities=16% Similarity=0.152 Sum_probs=73.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN-LANAYY 376 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~ 376 (546)
.|.++....++++..|...+.... +.|.+.+--..|.+++..+|.+++.|.. -+.-+.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~---------------------k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~ 153 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVI---------------------KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELF 153 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhh
Confidence 344555567888888877766555 6778899999999999999999999987 566778
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 377 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
..++++.+...|.++++++|+++..|.....
T Consensus 154 ~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 154 EIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred hhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 8999999999999999999999988875443
No 337
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.38 E-value=0.42 Score=43.14 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=66.4
Q ss_pred HHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 465 FETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 465 ~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
+....+.+......++..++..+...|+++.++..+++.+..+|-+..+|..+-.+|...|+...|+..|++.-++.
T Consensus 141 V~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 141 VLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 33344445555566778888899999999999999999999999999999999999999999999999999987754
No 338
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.21 E-value=3.6 Score=41.19 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=24.8
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
....+..|.+.|.+.=. ...+-.++...++|.+|....++--+.
T Consensus 759 ~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 759 KLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred hccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccc
Confidence 44555556665554322 123455666778888887766554333
No 339
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.09 E-value=0.21 Score=37.07 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=41.1
Q ss_pred HHHhccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 487 LDQASAVNVAKECLLAALKADPK---------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 487 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
..+.|+|..|++.+.+.+..... ...++.++|.++...|++++|+..+++++++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44677777777777776654221 1356777888888889999999999888887643
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.97 E-value=3.7 Score=40.45 Aligned_cols=104 Identities=16% Similarity=0.235 Sum_probs=66.3
Q ss_pred HHHHcCChHHHHHHHHhhHhcCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc
Q 009045 251 ILLKSGRLQSSISVLSSLLAVDPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329 (546)
Q Consensus 251 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 329 (546)
.....|+++++....... ++-|.- ..-...++..+.+.|..+.|+..- .++...+.++.
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLAl----------- 329 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELAL----------- 329 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHHH-----------
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHHH-----------
Confidence 345668898877776521 112222 344666777788888888876653 24555665554
Q ss_pred ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
+.|+++.|.+..+ ..++...|..||......|+++-|..+|+++-
T Consensus 330 -------------~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 330 -------------QLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp -------------HCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred -------------hcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 7889988887654 34478899999999999999999999998764
No 341
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.85 E-value=5.2 Score=36.64 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCcccc
Q 009045 138 KGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDK 217 (546)
Q Consensus 138 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 217 (546)
+....+++++|..+.++..|+.--. --..+|.+.|++|++.... .+.........|..
T Consensus 205 ~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~----------------~yr~sqq~qh~~~~---- 262 (556)
T KOG3807|consen 205 KAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGET----------------IYRQSQQCQHQSPQ---- 262 (556)
T ss_pred HHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHH----------------HHhhHHHHhhhccc----
Confidence 4566788999999999988876543 2467888899998876211 10100000000100
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC--hHHHHHHHHHHHHcCCHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAV--VWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 293 (546)
. +...+.+ .+.. +-..++.|-.++|+..+|++.|+...+-.|-. ..++-+|-..+..+.-|.
T Consensus 263 -------~------da~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 263 -------H------EAQLRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred -------h------hhhhhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111122 2222 33468899999999999999999888776622 234445555555555444
Q ss_pred HHHHHH
Q 009045 294 QSAKCF 299 (546)
Q Consensus 294 ~A~~~~ 299 (546)
+....+
T Consensus 329 DvqavL 334 (556)
T KOG3807|consen 329 DVQAVL 334 (556)
T ss_pred HHHHHH
Confidence 444333
No 342
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.73 E-value=6.8 Score=37.62 Aligned_cols=296 Identities=12% Similarity=0.094 Sum_probs=168.9
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 309 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (546)
-++.-++.+|.+...|+.|..-+..+|.+++-.+.|++...-.|-...+|...-..-....+|..-...|-+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 5667788899999999999999999999999999999999988888888876666566678888888888888864322
Q ss_pred HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------cCC
Q 009045 310 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL---------TGD 380 (546)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---------~g~ 380 (546)
.+.|...- -|.++-+.. ..| ...-..-+|.+..-.+.-.+|.....|...+..+.. +.+
T Consensus 109 ldLW~lYl-~YIRr~n~~--------~tG---q~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqr 176 (660)
T COG5107 109 LDLWMLYL-EYIRRVNNL--------ITG---QKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQR 176 (660)
T ss_pred HhHHHHHH-HHHHhhCcc--------ccc---chhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHH
Confidence 33443222 222211100 000 011123344444444444677777777776665442 334
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHH------HHHHHHHhhhccCchhHHHHHHHHHHHHHhc---CCCCCC---------
Q 009045 381 HRSSGKCLEKAAKLEPNCMSTRYAV------AVSRIKDAERSQEPTEQLSWAGNEMASILRE---GDPVQI--------- 442 (546)
Q Consensus 381 ~~~A~~~~~~al~~~p~~~~~~~~l------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------- 442 (546)
.+.-...|.+++..--++..-.+.- ....+-......+....+..+...+...... ....+|
T Consensus 177 id~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~ 256 (660)
T COG5107 177 IDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKA 256 (660)
T ss_pred HHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccc
Confidence 5566677888876543433222110 0000000000111111111222112111111 111111
Q ss_pred --CcHHHHHHHHHHHHhcc------cHHHHHH-HHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 009045 443 --EPPIAWAGFAAVQKTHH------EVAAAFE-TEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 511 (546)
Q Consensus 443 --~~~~~~~~l~~~~~~~~------~~~~A~~-~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 511 (546)
....-|.++...-...+ -..+-+. .+.+.+. ...+..|+.-...+...++-+.|+...++++...|.
T Consensus 257 ~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-- 334 (660)
T COG5107 257 ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-- 334 (660)
T ss_pred cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--
Confidence 11112555544433222 1222222 2223333 344566776666777888889999888888776665
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 512 HIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
..+.++.+|....+-+.-..+|+++.+-+
T Consensus 335 -L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 335 -LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred -hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 78889999998888888888888877654
No 343
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.63 E-value=13 Score=40.44 Aligned_cols=141 Identities=8% Similarity=0.012 Sum_probs=89.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHH
Q 009045 156 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 235 (546)
Q Consensus 156 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al 235 (546)
....++.....|++|+..|++.....|.-... -.+.+..|......... .-....+++|+..|++.-
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 546 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEG---------YEAQFRLGITLLEKASE----QGDPRDFTQALSEFSYLH 546 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc---------hHHHHHhhHHHHHHHHh----cCChHHHHHHHHHHHHhc
Confidence 34556677788999999999999887754221 12233333333222221 112256889999998854
Q ss_pred hcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCH
Q 009045 236 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-----GDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 236 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~ 310 (546)
..|.-+--|...|.+|.++|++++-+++|.-+++..|+.+..-...-.+-+++ .+-..|....--++..-|...
T Consensus 547 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 547 -GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred -CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 45666777888999999999999999999999999998876543333222221 122334444445555555543
No 344
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.61 E-value=0.15 Score=30.10 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 512 HIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
+++..||.+-...++|++|+..|++++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888753
No 345
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.40 E-value=2 Score=36.37 Aligned_cols=96 Identities=7% Similarity=-0.129 Sum_probs=71.6
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHhhccch-----hhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHH--
Q 009045 443 EPPIAWAGFAAVQKTHHEVAAAFETEENELSKM-----EECAGAGESAFLDQASAVNVAKECLLAALKADP--KAAHI-- 513 (546)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~-- 513 (546)
....++..+|..|.+.|+++.|++.|.+..+.. ..+.++.+..+....+++.....++.++-..-. .+...
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 345678899999999999999999999866532 225567788888899999999999998877533 33332
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHHH
Q 009045 514 --WANLANAYYLTGDHRSSGKCLEKVL 538 (546)
Q Consensus 514 --~~~lg~~~~~~g~~~~A~~~~~~al 538 (546)
...-|..+...++|.+|...|-.+.
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 2344667788888888888876554
No 346
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=3.5 Score=40.77 Aligned_cols=171 Identities=17% Similarity=0.112 Sum_probs=103.3
Q ss_pred CChhHHHHHHHHHHHHhcccchhc---cchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhc----
Q 009045 165 GQPLKAVSSYEKAEEILLRCEADI---ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS---- 237 (546)
Q Consensus 165 g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~---- 237 (546)
.-|++|...|.-+....+-+.... ..|.. +.....++.+....|+. -+..+-.+.++-.+++++.-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYH---vdsLLqva~~~r~qgD~----e~aadLieR~Ly~~d~a~hp~F~~ 324 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYH---VDSLLQVADIFRFQGDR----EMAADLIERGLYVFDRALHPNFIP 324 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcc---hhHHHHHHHHHHHhcch----hhHHHHHHHHHHHHHHHhcccccc
Confidence 458899999998887744331111 12322 23333444444445554 44455556666667766542
Q ss_pred ----------CcccHH---HHHHHHHHHHHcCChHHHHHHHHhhHhcCCC-ChHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 009045 238 ----------DTRQAV---VWNTLGLILLKSGRLQSSISVLSSLLAVDPN-NCDCIGNLGIAY-FQSGDMEQSAKCFQDL 302 (546)
Q Consensus 238 ----------~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~g~~~~A~~~~~~a 302 (546)
.|.+-. +++..-..+.+.|-+..|.++++-.++++|. ++-+...+..+| .+..+|+--++.++..
T Consensus 325 ~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 325 FSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred ccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 222322 3444455567889999999999999999998 777666666655 3556676666666655
Q ss_pred -----HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhc--CHHHHHHHHHHHHhcCCC
Q 009045 303 -----ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS--AVNVAKECLLAALKADPK 363 (546)
Q Consensus 303 -----l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~ 363 (546)
+...|+... -..++..|.. +.. .-+.|...+.+|+...|.
T Consensus 405 e~~n~l~~~PN~~y-S~AlA~f~l~--------------------~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 405 ENMNKLSQLPNFGY-SLALARFFLR--------------------KNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhccHhhcCCchH-HHHHHHHHHh--------------------cCChhhHHHHHHHHHHHHHhCcH
Confidence 334454432 2344555542 111 367788888899888773
No 347
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.35 E-value=0.85 Score=45.35 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
++.+-|.-+++..+|..+++.|...+..-|.+ +.....++.+|..+.+.+.|.+++++|-+.+|.++-......
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45566777888899999999999888775543 556778889999999999999999999999988876655554
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
.+.. ..+.-++|+.+......
T Consensus 436 ~~~~---------------------~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 436 QSFL---------------------AEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHH---------------------HhcchHHHHHHHHHHHh
Confidence 4444 55666677766665543
No 348
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=0.69 Score=41.24 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
...++=..+...++++.|..+.++.+.++|+++.-+...|.+|.++|.+.-|++.+...+...|+.+.+-......
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3444556788899999999999999999999999999999999999999999999999999999998776544433
No 349
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.28 E-value=0.12 Score=27.49 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHH
Q 009045 152 HAHFLLGLMYQRLGQPLKAVSSYEK 176 (546)
Q Consensus 152 ~~~~~lg~~~~~~g~~~~A~~~~~~ 176 (546)
.+.+.+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5788999999999999999998763
No 350
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.25 E-value=0.19 Score=29.64 Aligned_cols=29 Identities=34% Similarity=0.287 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 009045 152 HAHFLLGLMYQRLGQPLKAVSSYEKAEEI 180 (546)
Q Consensus 152 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 180 (546)
+++..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999999997
No 351
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.18 E-value=4.2 Score=33.55 Aligned_cols=137 Identities=13% Similarity=0.120 Sum_probs=93.8
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 329 (546)
+.+.+..++|+..|..+-+-.-.. .-+....|.+....|+...|+..|..+-...|- +.....++++-.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlra-------- 138 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRA-------- 138 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHH--------
Confidence 456688899999998876654443 345667788999999999999999998765442 333323333221
Q ss_pred ccccccccchHHHhhcCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 330 GAGANTGEGACLDQASAVNVAKECLLAAL-KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
+..+...|.|++-....+..- ..+|-...+...||..-++.|++.+|...|..... +...+....+.+
T Consensus 139 --------a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRA 207 (221)
T COG4649 139 --------AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA 207 (221)
T ss_pred --------HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence 223347888887766555432 23455667888899999999999999999999887 444443333333
No 352
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.16 E-value=0.99 Score=48.96 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=97.5
Q ss_pred cchHHHhhcCHHHHHH------HHH-HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009045 337 EGACLDQASAVNVAKE------CLL-AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 409 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~------~~~-~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 409 (546)
.|......|.+.+|.+ .+. ..-.+.|.....+..++.++...|++++|+..-.++.-+......
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g--------- 1008 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG--------- 1008 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc---------
Confidence 4444555667776666 555 233457888899999999999999999999988887654321100
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhh----------ccchhhhH
Q 009045 410 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENE----------LSKMEECA 479 (546)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------l~~~~~~~ 479 (546)
...++....+.+++......++...|...+.+. ..|.....
T Consensus 1009 -----------------------------~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~ 1059 (1236)
T KOG1839|consen 1009 -----------------------------KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALS 1059 (1236)
T ss_pred -----------------------------CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhh
Confidence 000001111222222222222222222222221 11222233
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 480 GAGESAFLDQASAVNVAKECLLAALKADP--------KAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
..+++.++...++++.|+++.+.|+...- .....+..++..+...+++..|....+....+|.
T Consensus 1060 ~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1060 FINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 44666677777888888888888877432 2345566777777778888888877777777664
No 353
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.09 E-value=9.5 Score=37.36 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=43.0
Q ss_pred HHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHhcCCCCh
Q 009045 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL--------------------TGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 341 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~ 399 (546)
|....++.+|+......++.+..+..+...+..-+.. -.++.+++..|++.+..+..+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF 293 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF 293 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence 3456778888888888888877777666666555444 5567888888888888776654
No 354
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.08 E-value=0.14 Score=27.27 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 009045 512 HIWANLANAYYLTGDHRSSGKCLE 535 (546)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~ 535 (546)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677777777777777777665
No 355
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=12 Score=37.77 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 279 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 279 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
+.+-|.-.++..+|..++++|...+..-|.+.....- +.... .+..||..+.+.+.|.++++.|-
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR--------------~l~~CYL~L~QLD~A~E~~~EAE 421 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQR--------------ALQVCYLKLEQLDNAVEVYQEAE 421 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHH--------------HHHHHHhhHHHHHHHHHHHHHHH
Confidence 4455667788899999999999999887765443211 22221 23445568899999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 009045 359 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 395 (546)
Q Consensus 359 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 395 (546)
+.+|.++-....+-.+....|.-++|+.+........
T Consensus 422 ~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 422 EVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred hhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 9999999988888889999999999999988876553
No 356
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.49 E-value=0.68 Score=34.33 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=44.0
Q ss_pred HHHcCChHHHHHHHHhhHhcCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPN---------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
..+.|+|.+|++.+.+....... ...+..++|.++...|++++|+..+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45778899998888777765221 245678899999999999999999999998743
No 357
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.24 E-value=0.55 Score=27.36 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHH--HHHHHhc
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYE--KAEEILL 182 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~p 182 (546)
++.++.+|..+...|++++|+..|+ -+..+++
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3568899999999999999999944 7776644
No 358
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.06 E-value=2.5 Score=41.68 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=40.6
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
++.|+++.|.+..++ .+++..|..||...+.+|+++-|.++|+++- -+..|..+|...|+.+.=.+.
T Consensus 329 l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHH
T ss_pred HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHH
Confidence 345666666655432 2355677777777777777777777777642 234455566666665444444
Q ss_pred HHHH
Q 009045 299 FQDL 302 (546)
Q Consensus 299 ~~~a 302 (546)
.+.+
T Consensus 396 ~~~a 399 (443)
T PF04053_consen 396 AKIA 399 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 359
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=8.8 Score=34.47 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=87.8
Q ss_pred ccChhhHHHHHHHHHHHHhcCc--------ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-----CCCChHHHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDT--------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNNCDCIGNLGI 284 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~ 284 (546)
....+++++|+..|.+.+.... ........++.+|...|++..--+.....-.. .|....+...+..
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 3577889999999999986521 22447788999999999887654444332221 1111111111111
Q ss_pred H-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc---
Q 009045 285 A-YFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--- 360 (546)
Q Consensus 285 ~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 360 (546)
- -.....++.-+......++........+..+..-. .+...+.+.|.|.+|+......+.-
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~---------------Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELEC---------------KLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 1 11223344444444444433221111111111111 1233445888888888877665432
Q ss_pred ---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 361 ---DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 361 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
.+.-..++..-..+|....+..++...+..+-.
T Consensus 158 ~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 158 YDDKINLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred hcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 233456677777888888888777777666543
No 360
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.92 E-value=1.1 Score=40.62 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
...++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999998764
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.86 E-value=2.3 Score=29.77 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=16.6
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
++...+.++|+..++++++..++....+..+|.+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l 49 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYL 49 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3344455555555555555555444444444433
No 362
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.84 E-value=9.8 Score=34.58 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=67.0
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhH----------------hcCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLL----------------AVDPNNCDCIGNLGI-AYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a 302 (546)
.++..+..+|..+++.|++.+|..+|-..- +-.|...+.+...+. -|...++...|...+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 568899999999999999999988875431 124555555555544 456779999998887776
Q ss_pred Hhh----CCC---------CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 009045 303 ILK----DQN---------HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 369 (546)
Q Consensus 303 l~~----~p~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 369 (546)
.+. +|. ......+...++...-++ .....+..-.+.|+..++.+|.......
T Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~---------------~~~~~F~~L~~~Y~~~L~rd~~~~~~L~ 232 (260)
T PF04190_consen 168 TSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCER---------------DNLPLFKKLCEKYKPSLKRDPSFKEYLD 232 (260)
T ss_dssp HHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHH---------------T-HHHHHHHHHHTHH---HHHHTHHHHH
T ss_pred HHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhc---------------CcHHHHHHHHHHhCccccccHHHHHHHH
Confidence 655 331 111223333333211000 0112234444555555666666777777
Q ss_pred HHHHHHHHcC
Q 009045 370 NLANAYYLTG 379 (546)
Q Consensus 370 ~l~~~~~~~g 379 (546)
.+|..|+...
T Consensus 233 ~IG~~yFgi~ 242 (260)
T PF04190_consen 233 KIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHH---
T ss_pred HHHHHHCCCC
Confidence 8888887644
No 363
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.84 E-value=0.71 Score=26.88 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=9.6
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 009045 279 IGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 279 ~~~la~~~~~~g~~~~A~~~ 298 (546)
++.+|-.+...|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
No 364
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.63 E-value=0.75 Score=43.26 Aligned_cols=84 Identities=6% Similarity=0.003 Sum_probs=64.9
Q ss_pred ChhhHHHHHHHHHHHHhcCc------ccH-----HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDT------RQA-----VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 288 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p------~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 288 (546)
..|+|..|++++.+.-.... ++. .+-..+..||.++++.+-|+....+.|.++|....-+...|.++..
T Consensus 195 Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~ 274 (569)
T PF15015_consen 195 AAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRR 274 (569)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHH
Confidence 44555666666655443321 111 2345689999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHH
Q 009045 289 SGDMEQSAKCFQDLI 303 (546)
Q Consensus 289 ~g~~~~A~~~~~~al 303 (546)
+.+|.+|.+.+.-+.
T Consensus 275 LeRy~eAarSamia~ 289 (569)
T PF15015_consen 275 LERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988766554
No 365
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.02 E-value=0.71 Score=41.14 Aligned_cols=64 Identities=13% Similarity=-0.018 Sum_probs=58.9
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHH
Q 009045 340 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 403 (546)
Q Consensus 340 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 403 (546)
.+.+.++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+.+.+-.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 4458899999999999999999999999999999999999999999999999999999876543
No 366
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.01 E-value=1.9 Score=36.62 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC----ChHHHHHHHHHHHHcCCHHHHH
Q 009045 225 EEILSKLKESMQS-DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN----NCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 225 ~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 296 (546)
++|...|-++-.. .-++++..+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.+|..+|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 6677766655332 1256788888888776 57888999999999988443 4788899999999999988874
No 367
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=90.17 E-value=15 Score=33.79 Aligned_cols=53 Identities=8% Similarity=0.090 Sum_probs=36.1
Q ss_pred HHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 251 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 251 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
.-.+..+..+-++.-..+++++|+.+.++..|+.- ..--..+|.+.++++++.
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHH
Confidence 33455666666777778888888888888777643 223456777777777764
No 368
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.12 E-value=17 Score=38.85 Aligned_cols=30 Identities=13% Similarity=0.017 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhccc
Q 009045 445 PIAWAGFAAVQKTHHEVAAAFETEENELSK 474 (546)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 474 (546)
...|...+.++.+.|+.++|+..|...++.
T Consensus 684 ~~l~ee~aill~rl~khe~aL~Iyv~~L~d 713 (877)
T KOG2063|consen 684 DELYEERAILLGRLGKHEEALHIYVHELDD 713 (877)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 457888899999999999999987665543
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.04 E-value=1.5 Score=39.27 Aligned_cols=62 Identities=23% Similarity=0.072 Sum_probs=55.0
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 480 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
....+..|...|.+.+|+.+.++++.++|-+...+..+-.++...|+--.|+..|++.-+.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 33455678899999999999999999999999999999999999999999999998876654
No 370
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.96 E-value=15 Score=33.41 Aligned_cols=100 Identities=9% Similarity=-0.042 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHHcCChH-HHHHHHHhhHhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH----------
Q 009045 241 QAVVWNTLGLILLKSGRLQ-SSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI---------- 303 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------- 303 (546)
+....-+++.++...+.-+ +-....+++++. .-.++..+..+|..|++.|++.+|..+|-..-
T Consensus 48 ~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~l 127 (260)
T PF04190_consen 48 DEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVML 127 (260)
T ss_dssp SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHH
Confidence 3344455666665554322 223334444433 22568899999999999999999988873321
Q ss_pred ------hhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc
Q 009045 304 ------LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 360 (546)
Q Consensus 304 ------~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 360 (546)
+-.|...+.+...+.+. |...++...|...+..-++.
T Consensus 128 l~~~~~~~~~~e~dlfi~RaVL~--------------------yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 128 LEEWSTKGYPSEADLFIARAVLQ--------------------YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHTSS--HHHHHHHHHHH--------------------HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchhHHHHHHHHH--------------------HHHhcCHHHHHHHHHHHHHH
Confidence 12233344443333332 34678888888877666554
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.91 E-value=2.4 Score=29.68 Aligned_cols=56 Identities=16% Similarity=-0.011 Sum_probs=43.5
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHhcCChHHHHHHHHHHHHHh
Q 009045 486 FLDQASAVNVAKECLLAALKADPKAAHIWANLA---NAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 486 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
-+....+.++|+..++++++..++.++-+..+| .+|...|+|.+.+++--.=+++.
T Consensus 15 kLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 15 KLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778889999999999999888777666555 46788899998888776666554
No 372
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.11 E-value=28 Score=35.37 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhc-------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAV-------------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~-------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
|..+|.--...=+++-|.+.|.++-.+ ......--..+|.++.-.|+|.+|.+.|.+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHc
Confidence 555666556666777777777665332 0111122345677778888888888888663
No 373
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=17 Score=32.78 Aligned_cols=196 Identities=15% Similarity=0.062 Sum_probs=111.3
Q ss_pred chHHHhhcCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH-HH
Q 009045 338 GACLDQASAVNVAKECLLAALKADPK--------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA-VS 408 (546)
Q Consensus 338 ~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~ 408 (546)
+.-..+.+++++|+..|.+.+...-. .......++.+|...|++..--+.....-+.-.+......... ..
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 33344788999999999999876211 3456788999999999986443333222211111111111000 01
Q ss_pred HHHHhhhccCc--------hhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc---ch--
Q 009045 409 RIKDAERSQEP--------TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---KM-- 475 (546)
Q Consensus 409 ~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---~~-- 475 (546)
.+.......+. .....|+..+-...++. ..-..+..++.+.|.|.+|+......+. ..
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~---------~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD 160 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRL---------ELECKLIYLLYKTGKYSDALALINPLLHELKKYDD 160 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC
Confidence 11111111111 12234444444444443 3445677888999999999987765322 11
Q ss_pred ---hhhHHhhHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 476 ---EECAGAGESAFLDQASAVNVAKECLLAALKA-----DPKAAHIW--ANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 476 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
-...+..-..+|....+..++...+..|-.. .|....+. ..-|...+.-.+|.-|..+|-++++-|.
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 1133445556788888888887777766543 23332222 2336666788899999999999887664
No 374
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.90 E-value=1.5 Score=40.36 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=28.8
Q ss_pred HHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 261 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 261 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
|+.+|.+|+.+.|++...+..+|.++...|+.-.|+-+|-+++-.....+.+..++..++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555443333444444444443
No 375
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.50 E-value=6.9 Score=33.40 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCChHHH
Q 009045 346 AVNVAKECLLAALKADPK----AAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 346 ~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A 384 (546)
+.++++..+.+++++.+. +++++..|+.++..+|+++.|
T Consensus 155 D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 155 DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444322 355555555555555555554
No 376
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.18 E-value=4.2 Score=38.54 Aligned_cols=87 Identities=10% Similarity=0.027 Sum_probs=60.6
Q ss_pred HHHHHcCChHHHHHHHHhhHhcC--------CCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 009045 250 LILLKSGRLQSSISVLSSLLAVD--------PNN----------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 311 (546)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~al~~~--------p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 311 (546)
..++++++|..|.--|..++++. |.. ..+...|..||..+++.+.|+....+.+-++|....
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~fr 263 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFR 263 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhh
Confidence 34455555555555555555541 111 124557899999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHH
Q 009045 312 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 357 (546)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 357 (546)
.+...+.++. .+.+|.+|-..+.-+
T Consensus 264 nHLrqAavfR---------------------~LeRy~eAarSamia 288 (569)
T PF15015_consen 264 NHLRQAAVFR---------------------RLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 8777777766 566677766655443
No 377
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.06 E-value=37 Score=35.56 Aligned_cols=141 Identities=9% Similarity=-0.059 Sum_probs=78.8
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 422 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~ 422 (546)
..++++.....+...-..........+.+|.++...|+.++|...|+++.. +. ..+-.++...++...........
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LAa~~Lg~~~~~~~~~~~ 399 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVAAQRLGEEYPLKIDKAP 399 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHHHHHcCCCCCCCCCCCC
Confidence 677888877777775444445678899999999999999999999999854 22 23334444444322111000000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHH
Q 009045 423 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLA 502 (546)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 502 (546)
.. ...+ .. ..-...+..+...|+...|.......+...+......++......|.++.++....+
T Consensus 400 ~~------~~~~-------~~--~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 400 KP------DSAL-------TQ--GPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred ch------hhhh-------cc--ChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 00 0000 00 112344455556666666666665544444444445555556666666666655443
No 378
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.97 E-value=2.7 Score=37.74 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.+...+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+--.+++.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4445677888999999999999999999999999999999999999999999888877543
No 379
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=87.79 E-value=13 Score=29.91 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=73.7
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 422 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~ 422 (546)
..+.....+.+++..+..++.++..+..+..+|... +..+.+..++. .++....-..+..
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd~~~~~~~--------------- 78 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYDIEKVGKL--------------- 78 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCCHHHHHHH---------------
Confidence 457788899999998888777788888888888765 34455555542 1111111111100
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHH
Q 009045 423 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLA 502 (546)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 502 (546)
... ...|.....++.+.|++.+|+..+ ....++++.|++++.+
T Consensus 79 -----------c~~--------~~l~~~~~~l~~k~~~~~~Al~~~------------------l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 79 -----------CEK--------AKLYEEAVELYKKDGNFKDAIVTL------------------IEHLGNYEKAIEYFVK 121 (140)
T ss_pred -----------HHH--------cCcHHHHHHHHHhhcCHHHHHHHH------------------HHcccCHHHHHHHHHh
Confidence 000 123556666677777777777653 2233778888888886
Q ss_pred HHHhCCCCHHHHHHHHHHHHh
Q 009045 503 ALKADPKAAHIWANLANAYYL 523 (546)
Q Consensus 503 al~~~p~~~~~~~~lg~~~~~ 523 (546)
..+++.|..++..+..
T Consensus 122 -----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 122 -----QNNPELWAEVLKALLD 137 (140)
T ss_pred -----CCCHHHHHHHHHHHHc
Confidence 3567888888776653
No 380
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=87.72 E-value=12 Score=34.53 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHH
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 234 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~a 234 (546)
..+..+|...++|.+|+......+.-..+-+ +-..++.++..-..+| ....+..+|...+..|
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlD------DK~lLvev~llESK~y-----------~~l~Nl~KakasLTsA 194 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLD------DKILLVEVHLLESKAY-----------HALRNLPKAKASLTSA 194 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc------cccceeeehhhhhHHH-----------HHHhcchhHHHHHHHH
Confidence 4578889999999999998888776532211 1112223333333333 3334447776666655
Q ss_pred Hhc-----Cccc--HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC---CChH---HHHHHHHHHHHcCCHHHHHH--HH
Q 009045 235 MQS-----DTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDP---NNCD---CIGNLGIAYFQSGDMEQSAK--CF 299 (546)
Q Consensus 235 l~~-----~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~---~~~~la~~~~~~g~~~~A~~--~~ 299 (546)
-.. .|.. +..-..-|..+....+|..|..+|-.+++-.. ++.. ++..+-.+-..++..++--. .-
T Consensus 195 RT~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~ 274 (411)
T KOG1463|consen 195 RTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSA 274 (411)
T ss_pred HHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 322 1211 12223346666677899999999988887522 1122 33333444445555555333 33
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC
Q 009045 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362 (546)
Q Consensus 300 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 362 (546)
+.+++....+.++....+..+..+ .+.+|+.|+..|..-+..+|
T Consensus 275 K~~l~y~g~~i~AmkavAeA~~nR-------------------SLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 275 KLALKYAGRDIDAMKAVAEAFGNR-------------------SLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHhccCcchHHHHHHHHHhcCC-------------------cHHHHHHHHHHhHHHHhcCh
Confidence 445666666777777777766533 56677888888777776554
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.74 E-value=44 Score=35.02 Aligned_cols=54 Identities=7% Similarity=-0.040 Sum_probs=41.1
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 486 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 486 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
.....++++.....+...-..........|++|..+...|+.++|..+|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 444778888777777765443345677889999998889999999999998743
No 382
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.38 E-value=1.5 Score=26.94 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 515 ANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 515 ~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
+.||.+|...|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677788888888888888877774
No 383
>PF12854 PPR_1: PPR repeat
Probab=86.35 E-value=2 Score=24.55 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 009045 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEK 176 (546)
Q Consensus 149 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 176 (546)
.|...|..+-..|.+.|+.++|++.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4677899999999999999999999986
No 384
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.15 E-value=3 Score=38.37 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 288 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 288 (546)
|..+|.+|+.+.|.+...++.+|.++...|+.-.|+=+|-+++-...-.+.+..+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997765568888888888877
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.43 E-value=2.5 Score=23.40 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009045 491 SAVNVAKECLLAALKADPKAAHIWANLANA 520 (546)
Q Consensus 491 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 520 (546)
|+.+.|...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467889999999999999999999887654
No 386
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=84.80 E-value=22 Score=29.77 Aligned_cols=166 Identities=14% Similarity=0.185 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc-----C
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLK-----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-----G 290 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g 290 (546)
+.+|++|.+.|..--..+ ..+...+.+|..++. .++...|+..|..+-. -+.+.+...+|.++..- +
T Consensus 48 ~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 356677777776654433 345667777765543 4688999999998876 46788888888888652 2
Q ss_pred C--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc---ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 291 D--MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---GAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 291 ~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
+ ..+|.+++.++-.+. +..+.+.|...++.-...... ....-...+..+.-.++.++|.++--++-+++ ++
T Consensus 125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~ 200 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IP 200 (248)
T ss_pred CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--Ch
Confidence 3 678999999987654 666777777777632111111 11222334445555667777777777776653 35
Q ss_pred HHHHHHHHHHHHc----CChHHHHHHHHHHHh
Q 009045 366 HIWANLANAYYLT----GDHRSSGKCLEKAAK 393 (546)
Q Consensus 366 ~~~~~l~~~~~~~----g~~~~A~~~~~~al~ 393 (546)
.+.-++.+.|..- .+-++|..+-.++.+
T Consensus 201 ~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 201 QACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred HHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 5555555555331 234455555554444
No 387
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.79 E-value=2.9 Score=35.86 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=36.0
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 275 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 275 (546)
++.+.+.+++...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|++
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 445555666666666666666666666666666666666666666666666666654
No 388
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.63 E-value=2.1 Score=41.11 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhc---------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAV---------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
+...|.+++.-+|+|..|++.++.. ++ .+-....++..|-+|+.+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778899999999999988753 22 233467889999999999999999999999874
No 389
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.47 E-value=45 Score=33.02 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=32.9
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------------------cCChHHHHHHHHHHHH
Q 009045 487 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL--------------------TGDHRSSGKCLEKVLM 539 (546)
Q Consensus 487 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~ 539 (546)
|....++++|++.+..+++.+..+..+.-.+-.-+.. -.++..++.-|++.+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~ 287 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMH 287 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhe
Confidence 4455667777777777777777666665554444333 4456666666666554
No 390
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.42 E-value=25 Score=31.70 Aligned_cols=166 Identities=14% Similarity=0.064 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHH--------cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc--CCHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLK--------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS--GDMEQ 294 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~ 294 (546)
..|++.-...+..+|....+|...-.+... ..-++.-+..+..+++.+|.+...|...-.++... ..+..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 456666666777778777777766555543 22356667788899999999999999888877655 66788
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH---
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL--- 371 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--- 371 (546)
-....++.+..++.|...|...-.++. .+.-.....++..-.++-..++..++.+..+|...
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~---------------~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~ 193 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLR---------------TIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIW 193 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeee---------------cchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHH
Confidence 888889999999998877754433331 01111133344555677778888899999988877
Q ss_pred HHHHHHcCC------hHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 372 ANAYYLTGD------HRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 372 ~~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
-...+..|+ +++=+.+.-.++-.+|++..+|..+
T Consensus 194 ~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 194 IERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHH
Confidence 333444554 3455666666777789988777644
No 391
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.32 E-value=2.4 Score=25.99 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 368 WANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
.+.++.+|..+|+.+.|...+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999999999995
No 392
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.93 E-value=7 Score=27.31 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEI 180 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 180 (546)
.+...|.-+-..|++.+|+.+|+++++.
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3445555566667777766666666654
No 393
>PF12854 PPR_1: PPR repeat
Probab=83.74 E-value=3.2 Score=23.74 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009045 510 AAHIWANLANAYYLTGDHRSSGKCLEK 536 (546)
Q Consensus 510 ~~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (546)
+..+|..+-..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456777788888888888888888765
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.71 E-value=19 Score=34.77 Aligned_cols=59 Identities=14% Similarity=-0.048 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHh-hcc---------chhhhHHhhHHHHHHHhccHHHHHHHHHHHHH
Q 009045 447 AWAGFAAVQKTHHEVAAAFETEEN-ELS---------KMEECAGAGESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 447 ~~~~l~~~~~~~~~~~~A~~~~~~-~l~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
....+..++.-.|+|..|++.... .+. ......+|.+|-+|+-+++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888887765 111 22224577888888888888888888887763
No 395
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.66 E-value=9.1 Score=33.02 Aligned_cols=59 Identities=22% Similarity=0.126 Sum_probs=54.8
Q ss_pred HhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 342 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
.+.+...+++...+.-++-.|.+......+-.++.-.|+|++|...++-+-++.|++..
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 37788999999999999999999999999999999999999999999999999998753
No 396
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.58 E-value=3.9 Score=22.55 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 290 GDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|+.+.|...|++++...|.+...|..+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34566666666666666666666655443
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.50 E-value=28 Score=33.76 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh--HHHHHH--HHHHHHcCCHHHHHHHHHHHHhh
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC--DCIGNL--GIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 305 (546)
.....+.-++..++|..|...|..+...-|... ..+..+ |..++..-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445567788899999999999999988533333 344444 44456788999999999998865
No 398
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.35 E-value=10 Score=34.22 Aligned_cols=75 Identities=12% Similarity=-0.017 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcc-chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCChHHHHHHH
Q 009045 462 AAAFETEENELS-KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCL 534 (546)
Q Consensus 462 ~~A~~~~~~~l~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~ 534 (546)
.+|+..|.+.-. ..-......+|..|+..|++++|+.+|+.+....... ..++..+..|+...|+.+..+.+.
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445555554222 2333455689999999999999999999997654322 566778899999999998877665
Q ss_pred HH
Q 009045 535 EK 536 (546)
Q Consensus 535 ~~ 536 (546)
=+
T Consensus 242 le 243 (247)
T PF11817_consen 242 LE 243 (247)
T ss_pred HH
Confidence 33
No 399
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=83.14 E-value=21 Score=36.83 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+++.-.++-..|....+|+.-++..+..-.+ |+. -+..+...+.+..+.++.+.+ +.|+-++|+.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t------~~vve~~nv~f~YaFALNRRN--------r~GDRakAL~ 264 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDT------LKVVETHNVRFHYAFALNRRN--------RPGDRAKALN 264 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cch------hhhhccCceEEEeeehhcccC--------CCccHHHHHH
Confidence 5777788888888888888877777665543 321 112222222334444444443 3488899999
Q ss_pred HHHHHHhcC-cccHHHHHHHHHHHHH---------cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC
Q 009045 230 KLKESMQSD-TRQAVVWNTLGLILLK---------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 291 (546)
Q Consensus 230 ~~~~al~~~-p~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 291 (546)
..-.+++.. |-.++.+...|++|-. .+..+.|+++|+++.+..|... .=.+++.++...|+
T Consensus 265 ~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 265 TVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGE 335 (1226)
T ss_pred HHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhh
Confidence 988888754 4446677777777753 3567789999999999998643 23455555555553
No 400
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.77 E-value=9.7 Score=26.62 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009045 447 AWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 520 (546)
Q Consensus 447 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 520 (546)
.+...+.-+...|++.+|+.. |.+|++.+.+++...|+++.-......+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~-------------------------Y~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITN-------------------------YKKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHH-------------------------HHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 345555566666666666655 4567777777777888887654444444
No 401
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=82.77 E-value=2.3 Score=39.27 Aligned_cols=77 Identities=13% Similarity=0.039 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
....+++.+-...+.+..|+..-..++..++....+++..+..+....++++|++.++.+....|++......+...
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 34555788888889999998888888888888899999999999999999999999999999999887765544433
No 402
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=82.45 E-value=53 Score=32.36 Aligned_cols=113 Identities=14% Similarity=-0.048 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCcc---ccccChhhHHHHHH
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSL---DKELEPEELEEILS 229 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~A~~ 229 (546)
....||.+++..|+|+-|...|+.+.+-.-.+ ..+..++.+....+.++...+.... .+-.-..-++.|..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D------kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~ 283 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND------KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYY 283 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc------hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHH
Confidence 34568999999999999999999988754222 2233333333333333333332200 00011223456666
Q ss_pred HHHHHH----hcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc
Q 009045 230 KLKESM----QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV 271 (546)
Q Consensus 230 ~~~~al----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 271 (546)
.|.+.- .....-..+....+.++...|.+.+|...+-+....
T Consensus 284 ~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 284 TYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 666631 111122335556666777777777777766665544
No 403
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=81.42 E-value=39 Score=30.16 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=34.6
Q ss_pred chHHHhhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH-cCChHHHHHHHHHHHhc
Q 009045 338 GACLDQASAVNVAKECLLAALKADPK-AAHIWANLANAYYL-TGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 338 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~ 394 (546)
+.+..+.|+|++.+.++++++..++. +.+-...++.+|-. .|....+...+......
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 44455888888888888888888766 44555556666532 34445555555544443
No 404
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=81.41 E-value=52 Score=31.53 Aligned_cols=109 Identities=17% Similarity=0.069 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
.+..|+.+..+|...|+...-...+...+....=-. ...... ...+.+ +..|+..+.|+.|-.
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh----d~e~qa--vLiN~L-----------Lr~yL~n~lydqa~~ 230 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH----DEEGQA--VLINLL-----------LRNYLHNKLYDQADK 230 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC----cchhHH--HHHHHH-----------HHHHhhhHHHHHHHH
Confidence 367788899999999997777666666655421000 000000 000000 112466677888888
Q ss_pred HHHHHHh----cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC
Q 009045 230 KLKESMQ----SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 275 (546)
Q Consensus 230 ~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 275 (546)
...+..- .+...+..++.+|.+..-+++|..|.++|.+++...|..
T Consensus 231 lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 231 LVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 7777651 111335567788999999999999999999999998874
No 405
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=80.21 E-value=51 Score=30.71 Aligned_cols=166 Identities=16% Similarity=0.073 Sum_probs=107.8
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------------------hhHHHHHHHHHHHHhcccch
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ--------------------------PLKAVSSYEKAEEILLRCEA 186 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~--------------------------~~~A~~~~~~al~~~p~~~~ 186 (546)
++++...-.-+..+-|..++++-.++.+.+...+ .+++...+.+++.... .
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~-p-- 288 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRR-P-- 288 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCC-C--
Confidence 3666666677788899999999888887765422 5567777777766521 0
Q ss_pred hccchhhHHH-HHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHH
Q 009045 187 DIARPELLSL-VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 265 (546)
Q Consensus 187 ~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 265 (546)
-|..+.. +...+..+. .-..-+|..-..+|+-.....|. +.+-.+.+.......-...++...
T Consensus 289 ---GPYqlqAAIaa~HA~a~------------~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~v 352 (415)
T COG4941 289 ---GPYQLQAAIAALHARAR------------RAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMV 352 (415)
T ss_pred ---ChHHHHHHHHHHHHhhc------------ccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHH
Confidence 1222111 111111111 12345677777777776666664 455556666666666667777777
Q ss_pred HhhHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 266 SSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 266 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
+..... -......+...|..+.++|+.++|...|++++.+.++..+..+...
T Consensus 353 e~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 353 EALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 666554 2244566778899999999999999999999999988776654433
No 406
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.62 E-value=88 Score=33.13 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
...+...|..++..|++++|...|-+.+... .|... ..++++..+..+-..+
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l--------e~s~V--------------------i~kfLdaq~IknLt~Y 419 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFL--------EPSEV--------------------IKKFLDAQRIKNLTSY 419 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccC--------ChHHH--------------------HHHhcCHHHHHHHHHH
Confidence 4567778999999999999999999998752 22211 0114566666777777
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHH
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSI 262 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 262 (546)
++...+..-.+.+--..|-.+|.++++.++-.
T Consensus 420 Le~L~~~gla~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 420 LEALHKKGLANSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHHHcccccchhHHHHHHHHHHhcchHHHH
Confidence 77777665555555555666777776654433
No 407
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=79.38 E-value=68 Score=31.64 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=24.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 517 LANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 517 lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
-|.-|.+.|+...|..+|.+|+.+|...
T Consensus 376 Ag~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 376 AGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 3667899999999999999999999643
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.35 E-value=48 Score=29.89 Aligned_cols=56 Identities=11% Similarity=-0.078 Sum_probs=39.5
Q ss_pred cchHHHhhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 337 EGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
+|..|...|++++|+++|+.+...... ...+...+..|+...|+.+..+.+.-+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 456666888888998888888655332 34566677788888888887776654443
No 409
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.61 E-value=4.5 Score=28.28 Aligned_cols=21 Identities=19% Similarity=0.053 Sum_probs=17.5
Q ss_pred HHHHhccHHHHHHHHHHHHHh
Q 009045 486 FLDQASAVNVAKECLLAALKA 506 (546)
Q Consensus 486 ~~~~~g~~~~A~~~~~~al~~ 506 (546)
.-...|+|++|+.+|..+++.
T Consensus 15 ~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 15 DEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhHhhhHHHHHHHHHHHHHH
Confidence 455789999999999999874
No 410
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.67 E-value=61 Score=34.25 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=36.5
Q ss_pred hhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 343 QASAVNVAKECLLAALKADPK-AAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
+...|+-|+...+.- ..+++ -...+...|.-++..|++++|...|-+++..
T Consensus 346 kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 556677777655532 22222 3456777899999999999999999998864
No 411
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.69 E-value=16 Score=36.69 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=36.6
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHh
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 270 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 270 (546)
.++.|+++.|..+..++ ++..-|..||.+....+++..|.++|.++-.
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 35667778887765543 4566788899999999999999999988754
No 412
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.54 E-value=15 Score=33.01 Aligned_cols=139 Identities=17% Similarity=0.274 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--CChHHHHHHHHhhHhcCCCChHHHHHHHHHH------HHcCCHHHH
Q 009045 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKS--GRLQSSISVLSSLLAVDPNNCDCIGNLGIAY------FQSGDMEQS 295 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A 295 (546)
++.-+..+..+++.+|.+...|..+-.++... .++..-+...++.++.++.|..+|...-.+. .....+..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 36667789999999999999998887777655 6788888899999999999987776554444 344455556
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 374 (546)
.++-..++..++.+..+|...-....... +.|.+-.+ .-+++-+++.-.++-.+|++..+|..+-.+
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~-----------~~~~visq-k~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRF-----------NRGDVISQ-KYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHH-----------hhcccchH-HHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 67777788889999999887744433211 11221111 136677778888888899988888665443
No 413
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.53 E-value=58 Score=30.09 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN--------NCDCIGNLGIAYFQSGDMEQSAKCFQDLI--LKDQNHPA 311 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~ 311 (546)
......||.+|.+.++|..|-..+.- +.++.. ....+..+|.+|...++..+|..+..++- ..+..|..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 34677899999999999999887754 333321 13467789999999999999999888863 33456666
Q ss_pred HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 312 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
....+-.++. +++...++|-+|...|-+..
T Consensus 182 Lqie~kvc~A-----------------RvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 182 LQIEYKVCYA-----------------RVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 6655555543 44446666766666665443
No 414
>PF13041 PPR_2: PPR repeat family
Probab=76.44 E-value=12 Score=23.44 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEIL 181 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 181 (546)
+...|..+-..|.+.|++++|.+.|++..+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 45678889999999999999999999998763
No 415
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=76.32 E-value=66 Score=29.87 Aligned_cols=105 Identities=11% Similarity=0.040 Sum_probs=69.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
-.+++.+.|..|.+.|+-+.|++.+.+..+..- +-.-....+|..|....-..+.++..+..++...+ ++- .
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD-WeR-r 180 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD-WER-R 180 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC-hhh-h
Confidence 367999999999999999999999988765422 22334456677776665555666655555554433 222 2
Q ss_pred HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
+.-.+|. |.......++.+|-..|-.++.....
T Consensus 181 NRlKvY~----------------Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 181 NRLKVYQ----------------GLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhHHHHH----------------HHHHHHHHhHHHHHHHHHHHcccccc
Confidence 2333333 44445778899999999888876544
No 416
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=76.22 E-value=46 Score=28.00 Aligned_cols=180 Identities=9% Similarity=0.003 Sum_probs=96.8
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhcc
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYL-----TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~ 417 (546)
-..++++|...|..--+-+ ..+...+.+|.-++. .++...|++.|..+... +.+.+-..+++....... ..
T Consensus 47 i~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~~~gLl~~~g~~-~r 122 (248)
T KOG4014|consen 47 IQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACRYLGLLHWNGEK-DR 122 (248)
T ss_pred HHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHhhhhhhhccCcC-Cc
Confidence 4567888888887755433 245666666655542 45688999999988874 345555555544332111 11
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHH
Q 009045 418 EPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAK 497 (546)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~ 497 (546)
+.......+.+.+.+.... ++..+.+.|...+..-. +++. .. .+.... -...+..+.-..+.++|.
T Consensus 123 ~~dpd~~Ka~~y~traCdl------~~~~aCf~LS~m~~~g~--~k~~----t~-ap~~g~-p~~~~~~~~~~kDMdka~ 188 (248)
T KOG4014|consen 123 KADPDSEKAERYMTRACDL------EDGEACFLLSTMYMGGK--EKFK----TN-APGEGK-PLDRAELGSLSKDMDKAL 188 (248)
T ss_pred cCCCCcHHHHHHHHHhccC------CCchHHHHHHHHHhccc--hhhc----cc-CCCCCC-CcchhhhhhhhHhHHHHH
Confidence 1111112222222222221 22334444444443221 1110 00 010000 011222444556788999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHhc
Q 009045 498 ECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 498 ~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~ 542 (546)
.+--++-+++ ++.+.-++.+.|.. -.+.++|..+-.+|.++..
T Consensus 189 qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~ 235 (248)
T KOG4014|consen 189 QFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIME 235 (248)
T ss_pred HHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHH
Confidence 9888888874 67777888888743 2467889999999988874
No 417
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=74.94 E-value=5.1 Score=28.10 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=16.0
Q ss_pred HHHHHhccHHHHHHHHHHHHHh
Q 009045 485 AFLDQASAVNVAKECLLAALKA 506 (546)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~al~~ 506 (546)
.-....|+|++|..+|..+++.
T Consensus 14 ve~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 14 LEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 3455678888888888887763
No 418
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.86 E-value=6.5 Score=27.47 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=12.8
Q ss_pred ChhhHHHHHHHHHHHHhc
Q 009045 220 EPEELEEILSKLKESMQS 237 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~ 237 (546)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 356778888888777753
No 419
>PF13041 PPR_2: PPR repeat family
Probab=74.80 E-value=8.2 Score=24.26 Aligned_cols=28 Identities=11% Similarity=-0.164 Sum_probs=19.5
Q ss_pred HHhhHHHHHHHhccHHHHHHHHHHHHHh
Q 009045 479 AGAGESAFLDQASAVNVAKECLLAALKA 506 (546)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 506 (546)
.|..+-..|.+.|++++|.+.|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3455566777777777777777777764
No 420
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=74.77 E-value=1.2e+02 Score=32.14 Aligned_cols=222 Identities=10% Similarity=0.030 Sum_probs=117.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH---HcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCc
Q 009045 138 KGLVHVARKMPKNAHAHFLLGLMYQ---RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 214 (546)
Q Consensus 138 ~~~~~~l~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (546)
..-.++....|.++..|.....-.. ..+.-.++...|++++.-.- .-+-+...+......+..
T Consensus 134 ~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~------~v~iw~e~~~y~~~~~~~-------- 199 (881)
T KOG0128|consen 134 QARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN------SVPIWEEVVNYLVGFGNV-------- 199 (881)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc------cchHHHHHHHHHHhcccc--------
Confidence 3344455566777777766554332 34667788889999886421 123333333333333333
Q ss_pred cccccChhhHHHHHHHHHHHHhcCc-------ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHH----HHHHH
Q 009045 215 LDKELEPEELEEILSKLKESMQSDT-------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC----IGNLG 283 (546)
Q Consensus 215 ~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la 283 (546)
+...++++.....|.+++..-. .....+...-..|...-..++-+.++...+... -+..+ |....
T Consensus 200 ---~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~s 275 (881)
T KOG0128|consen 200 ---AKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQS 275 (881)
T ss_pred ---ccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHH
Confidence 3445666888888888876422 223455556666666666677888888877764 22211 11111
Q ss_pred --HH-HHHcCCHHHHHHHHHH-------HHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH
Q 009045 284 --IA-YFQSGDMEQSAKCFQD-------LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 353 (546)
Q Consensus 284 --~~-~~~~g~~~~A~~~~~~-------al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 353 (546)
.+ .....+++.|.....+ .++..+.....|..+..... ..|+.-.-...
T Consensus 276 k~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~---------------------~~G~p~ri~l~ 334 (881)
T KOG0128|consen 276 KAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEK---------------------KSGDPVRIQLI 334 (881)
T ss_pred hcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------------------hcCCchHHHHH
Confidence 11 1223444555444333 33333333333333333322 56666666677
Q ss_pred HHHHHhcCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCC
Q 009045 354 LLAALKADPKAAHIWANLANAY-YLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 354 ~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
+++++.-.+.+...|...|... ..++-.+.+...+.++++..|-.
T Consensus 335 ~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~t 380 (881)
T KOG0128|consen 335 EERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWT 380 (881)
T ss_pred HHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchH
Confidence 7777776666677766665433 22333444445555555555543
No 421
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=74.46 E-value=5.5 Score=36.96 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=48.5
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
..+.+..|+.....++..++....+++..+..+....++++|+..++.+....|++......+.
T Consensus 287 k~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~ 350 (372)
T KOG0546|consen 287 KVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE 350 (372)
T ss_pred cccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence 6666777777777777777777888888888888888888888888888888887765554443
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.24 E-value=32 Score=33.30 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=40.0
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHH--HHHHH--HHHHHHcCChHHHHHHHHhhHhc
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAV--VWNTL--GLILLKSGRLQSSISVLSSLLAV 271 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l--~~~~~~~g~~~~A~~~~~~al~~ 271 (546)
.+..++|..|...+..+...-|.... .+..+ |..++..-++.+|.+.+++.+..
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35778899999999999885333332 34444 45567788999999999998765
No 423
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=74.05 E-value=26 Score=27.71 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=37.7
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 486 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 486 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
.+...|+-+.--+.+....+....++..+..+|.+|.+.|+..+|-+.+.+|-+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4556666666666666666655667899999999999999999999999888764
No 424
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.81 E-value=13 Score=31.90 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 493 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 493 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
.+..++..++.++..| ++.++..++.++...|+.++|....+++..+|+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4555666777777777 477888889999999999999999988888886
No 425
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.71 E-value=40 Score=34.03 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009045 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEE 179 (546)
Q Consensus 149 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 179 (546)
++..-|..||.+....|++..|.++|.++..
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3455566666666666777767666666654
No 426
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.34 E-value=7.3 Score=27.38 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=10.5
Q ss_pred ChhhHHHHHHHHHHHHh
Q 009045 220 EPEELEEILSKLKESMQ 236 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~ 236 (546)
..|++++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 34566777766666654
No 427
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=72.30 E-value=25 Score=33.99 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=42.3
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhh
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL 268 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 268 (546)
..+.+-+|+.+++.++..+|.+......+..+|...|-...|...|...
T Consensus 195 ~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 195 DSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred CHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4566788999999999999999999999999999999999999988654
No 428
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=72.01 E-value=1.7e+02 Score=32.61 Aligned_cols=306 Identities=12% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHH--HHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 138 KGLVHVARKMPKNAHAHFLLGLMYQRLG--QPLKAVSSYEKAE--EILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 138 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
++.+.++...+.+ .-...+-..|.+.+ ..++|+....+.. ...+..+....+--++.-+...++.++-.+.++-.
T Consensus 778 ~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~La 856 (1265)
T KOG1920|consen 778 DAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTYDLDLA 856 (1265)
T ss_pred HHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhcccchHHH
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
.......+.+..+=+.++++.-+ -...+..=.+-..+++|+.|+..+.++= ...+-...+|-
T Consensus 857 l~VAq~SqkDPkEyLP~L~el~~-----m~~~~rkF~ID~~L~ry~~AL~hLs~~~-------------~~~~~e~~n~I 918 (1265)
T KOG1920|consen 857 LLVAQKSQKDPKEYLPFLNELKK-----METLLRKFKIDDYLKRYEDALSHLSECG-------------ETYFPECKNYI 918 (1265)
T ss_pred HHHHHHhccChHHHHHHHHHHhh-----chhhhhheeHHHHHHHHHHHHHHHHHcC-------------ccccHHHHHHH
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
+--..|..++.+...+.+.+...-.+| |..+...+.+++| |.
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~y-----------------a~hL~~~~~~~~A---------------------al 960 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAY-----------------ADHLREELMSDEA---------------------AL 960 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHH-----------------HHHHHHhccccHH---------------------HH
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHH---HH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAW---AG 450 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 450 (546)
.|...|+.++|+..|+.+.. ....+.......+...... ..
T Consensus 961 ~Ye~~GklekAl~a~~~~~d------------------------------------Wr~~l~~a~ql~~~~de~~~~a~~ 1004 (1265)
T KOG1920|consen 961 MYERCGKLEKALKAYKECGD------------------------------------WREALSLAAQLSEGKDELVILAEE 1004 (1265)
T ss_pred HHHHhccHHHHHHHHHHhcc------------------------------------HHHHHHHHHhhcCCHHHHHHHHHH
Q ss_pred HHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCC
Q 009045 451 FAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA----AHIWANLANAYYLTGD 526 (546)
Q Consensus 451 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~ 526 (546)
++.-+..++++-+|-......+........ .|++...|++|+.....+-..+--. +.+.-..|.+..-+.+
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~~sd~~~av~-----ll~ka~~~~eAlrva~~~~~~d~iee~l~~al~e~~~~~~~~L~~ 1079 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEYLSDPEEAVA-----LLCKAKEWEEALRVASKAKRDDIIEEVLKPALLEAFGEVLEFLED 1079 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHHhcCHHHHHH-----HHhhHhHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHh
Q 009045 527 HRSSGKCLEKVLMVY 541 (546)
Q Consensus 527 ~~~A~~~~~~al~~~ 541 (546)
..+-..-|.+=+...
T Consensus 1080 ~k~~f~~yk~RLl~v 1094 (1265)
T KOG1920|consen 1080 VKEQFVKYKKRLLVV 1094 (1265)
T ss_pred HHHHHHHHHHHHHHH
No 429
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=71.94 E-value=12 Score=30.14 Aligned_cols=50 Identities=24% Similarity=0.115 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 291 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 291 (546)
.+.....+...+..|++.-|.+..+.++..+|++..+...++.++..+|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45666777788888999999999999999999988888888888776654
No 430
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=71.94 E-value=97 Score=29.81 Aligned_cols=131 Identities=14% Similarity=0.095 Sum_probs=86.8
Q ss_pred HHHcCChHHHHHHHHhhHhc-CC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH
Q 009045 252 LLKSGRLQSSISVLSSLLAV-DP--------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD--QNHPAALINYAALL 320 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~-~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 320 (546)
++.+.++.+|.++-+..+.. .- -.+..|+.+..+|...|+...-...+...+... ..+......+..++
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 34568889988877766543 11 124568888888888898777666666555432 12222222333333
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 396 (546)
+ +.|...+.|+.|-....+..-- +...+...+.+|.+..-+++|..|.++|-+|+...|
T Consensus 216 L-----------------r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 216 L-----------------RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred H-----------------HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 3 2334677788888777765411 112456778899999999999999999999999999
Q ss_pred CCh
Q 009045 397 NCM 399 (546)
Q Consensus 397 ~~~ 399 (546)
.+.
T Consensus 279 q~~ 281 (493)
T KOG2581|consen 279 QHA 281 (493)
T ss_pred chh
Confidence 743
No 431
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.93 E-value=7 Score=21.16 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 514 WANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
|..+-.+|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 55566667777777777777766543
No 432
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=71.92 E-value=88 Score=29.30 Aligned_cols=160 Identities=13% Similarity=0.104 Sum_probs=87.6
Q ss_pred cChhhHHHHHHHHHHHHhc--Ccc--------cHHHHHHHHHHHHHcCChHHHHHHHHhhHh---cCCC--ChHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQS--DTR--------QAVVWNTLGLILLKSGRLQSSISVLSSLLA---VDPN--NCDCIGNLG 283 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~--~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~--~~~~~~~la 283 (546)
...++.++++..|...+.. .|. .......+|.+|.+.|+..+-.......-. .-+. -......+-
T Consensus 15 ~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lv 94 (411)
T KOG1463|consen 15 VSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLV 94 (411)
T ss_pred cccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3455668899999888873 111 134678899999999998876555444321 1111 111111111
Q ss_pred HHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc--
Q 009045 284 IAYF-QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-- 360 (546)
Q Consensus 284 ~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 360 (546)
.... .-+....-+.....+++........+.....- ..+...|...++|.+|+......+.-
T Consensus 95 d~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Le---------------arli~Ly~d~~~YteAlaL~~~L~rElK 159 (411)
T KOG1463|consen 95 DMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLE---------------ARLIRLYNDTKRYTEALALINDLLRELK 159 (411)
T ss_pred HHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHH---------------HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 1111 11223333344444443222121111111111 11345566889999999887766542
Q ss_pred --CC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 361 --DP--KAAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 361 --~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
+. .-.+++..-..+|+...+..+|...+..+-.
T Consensus 160 KlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 160 KLDDKILLVEVHLLESKAYHALRNLPKAKASLTSART 196 (411)
T ss_pred hcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 22 2456677778889999999998888877654
No 433
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=71.24 E-value=12 Score=25.72 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=12.3
Q ss_pred hHHHHHHHhccHHHHHHHHHHHH
Q 009045 482 GESAFLDQASAVNVAKECLLAAL 504 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al 504 (546)
..|.-+...|++++|+.+|.+++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555555554
No 434
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.09 E-value=7.2 Score=21.11 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 367 IWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
.|..+-..|.+.|++++|...|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 356677778888888888888877654
No 435
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=70.68 E-value=14 Score=29.71 Aligned_cols=51 Identities=20% Similarity=0.016 Sum_probs=39.6
Q ss_pred HHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH
Q 009045 479 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 529 (546)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 529 (546)
.....+...+..|++.-|.+....++..+|++..+...++.+|.++|.-.+
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 344555577889999999999999999999999999999999988776543
No 436
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=70.43 E-value=11 Score=20.89 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 514 WANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
|..+-..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444455555555555555555443
No 437
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.86 E-value=77 Score=30.46 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 353 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 353 (546)
.++..+|.-|...|+++.|++.|-++-........ .+.++..+-. ..|+|..-..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI---------------------~~~nw~hv~sy 209 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSI---------------------YMGNWGHVLSY 209 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH---------------------hhcchhhhhhH
Confidence 35566677777777777777777665443332221 1222222222 34445444444
Q ss_pred HHHHHhcC-------C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 354 LLAALKAD-------P-KAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 354 ~~~al~~~-------p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
..++...- + -.+.+...-|.+.+.+++|..|..+|-.+.
T Consensus 210 ~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 210 ISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44443321 0 023345556777777789999999886654
No 438
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.17 E-value=13 Score=26.13 Aligned_cols=26 Identities=19% Similarity=-0.102 Sum_probs=18.9
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHH
Q 009045 480 GAGESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
+...|.-+.+.|+|++|+.+|..+++
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44556667778888888888887765
No 439
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=68.00 E-value=11 Score=26.32 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=17.6
Q ss_pred HHHHHHHhccHHHHHHHHHHHHH
Q 009045 483 ESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 483 la~~~~~~g~~~~A~~~~~~al~ 505 (546)
.|.-....|++++|+.+|..+++
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456677889999988888876
No 440
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=67.91 E-value=9.4 Score=33.58 Aligned_cols=93 Identities=11% Similarity=0.127 Sum_probs=57.0
Q ss_pred ccChhhHHHHHHHHHHHHhcC---ccc---------HHHHHHHHHHHHHcCChHH-H-HHHHHhhHhc--CCCC--hHHH
Q 009045 218 ELEPEELEEILSKLKESMQSD---TRQ---------AVVWNTLGLILLKSGRLQS-S-ISVLSSLLAV--DPNN--CDCI 279 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~---p~~---------~~~~~~l~~~~~~~g~~~~-A-~~~~~~al~~--~p~~--~~~~ 279 (546)
.+..|+|+.|++...-+++.+ |+. ++-....+......|+.-+ . ...+..+... -|+. +..+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 468899999999999999864 221 1223334444555565321 1 1122222211 1222 3456
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCH
Q 009045 280 GNLGIAYF---------QSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 280 ~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
...|..+. ..++...|+.+++++++++|+..
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 66777663 45688899999999999998753
No 441
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=67.60 E-value=32 Score=33.26 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=42.3
Q ss_pred CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 256 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 256 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
...-+|+..++.++..+|.+......+..+|..+|-...|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 45667888999999999999999999999999999999999999653
No 442
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.57 E-value=59 Score=25.61 Aligned_cols=85 Identities=13% Similarity=0.077 Sum_probs=47.5
Q ss_pred CChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHh--cCcccH
Q 009045 165 GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ--SDTRQA 242 (546)
Q Consensus 165 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~ 242 (546)
|.-..-...+++++....+.+.....+.+ +.+|...+... ..+.+.|..+.. +.-..+
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~Ry---lkiWi~ya~~~-----------------~~~~~if~~l~~~~IG~~~A 99 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERY---LKIWIKYADLS-----------------SDPREIFKFLYSKGIGTKLA 99 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHH---HHHHHHHHTTB-----------------SHHHHHHHHHHHHTTSTTBH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHH---HHHHHHHHHHc-----------------cCHHHHHHHHHHcCccHHHH
Confidence 44555566777777776554333333333 33443333321 255666665544 344556
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLL 269 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al 269 (546)
..|...|..+...|++++|.++|+.+|
T Consensus 100 ~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 100 LFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 667777777777777777777777654
No 443
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=65.73 E-value=65 Score=25.39 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009045 495 VAKECLLAALK--ADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538 (546)
Q Consensus 495 ~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (546)
.+...|+.... +.-..+..|...|..+...|++++|.+.|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 77777777665 445668888889999999999999999998875
No 444
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=65.58 E-value=48 Score=26.26 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=38.3
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 395 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 395 (546)
..|+-++--+.+....+....++..+..+|.+|.+.|+..+|-+.+++|.+..
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 56666666677777776566689999999999999999999999999998754
No 445
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=65.12 E-value=27 Score=30.81 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhc--cchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHH
Q 009045 154 HFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADI--ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 231 (546)
Q Consensus 154 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 231 (546)
+...-...+..|+|+.|+.+..-||+.+-..+... ..|.+. +.-....+......|.. +... + ...+
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v--aeev~~~A~~~~~ag~~-----~e~~-~---~~~~ 154 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV--AEEVANAALKAASAGES-----VEPY-F---LRVF 154 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH--HHHHHHHHHHHHHcCCC-----CChH-H---HHHH
Confidence 33334456778999999999999999753221111 111111 11112222222222221 0100 1 1112
Q ss_pred HHHHh--cCccc--HHHHHHHHHHHH---------HcCChHHHHHHHHhhHhcCCCC
Q 009045 232 KESMQ--SDTRQ--AVVWNTLGLILL---------KSGRLQSSISVLSSLLAVDPNN 275 (546)
Q Consensus 232 ~~al~--~~p~~--~~~~~~l~~~~~---------~~g~~~~A~~~~~~al~~~p~~ 275 (546)
..+.. .-|+. +..+-..|..+. ..++...|+.++++++.++|+.
T Consensus 155 ~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 155 LDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 22211 11222 345666777773 4568889999999999999874
No 446
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.09 E-value=25 Score=30.25 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 346 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 346 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
..+..++..++.++..|+ +.++..++.++...|+.++|.....++....|.
T Consensus 126 ~l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345566777788888885 889999999999999999999999999999994
No 447
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=64.62 E-value=17 Score=25.70 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=15.7
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHH
Q 009045 480 GAGESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
+...|.-+...|++++|+.+|.++++
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33445556666666666666666654
No 448
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.22 E-value=33 Score=32.78 Aligned_cols=32 Identities=28% Similarity=0.240 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILL 182 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 182 (546)
-.++..+|.-|...|+++.|++.|.++-....
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT 181 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCT 181 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhc
Confidence 45778899999999999999999999776643
No 449
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=64.06 E-value=16 Score=20.65 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhc----CChHHHHHHHHHHHHH
Q 009045 512 HIWANLANAYYLT----GDHRSSGKCLEKVLMV 540 (546)
Q Consensus 512 ~~~~~lg~~~~~~----g~~~~A~~~~~~al~~ 540 (546)
.+.+.||.+|..- .+..+|..+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4567777777532 3788888888887653
No 450
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.97 E-value=1.2e+02 Score=27.78 Aligned_cols=103 Identities=11% Similarity=-0.015 Sum_probs=71.7
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHhhccchh-----hhH---HhhHHHHHHHhccHHHHHHHHHHHHHhCCCC---H
Q 009045 443 EPPIAWAGFAAVQKTHHEVAAAFETEENELSKME-----ECA---GAGESAFLDQASAVNVAKECLLAALKADPKA---A 511 (546)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-----~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 511 (546)
...++|.++|..|...++.+.+.+...+.+...- .+. ...+|.+|....-.++.++.....++...+- -
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 3457899999999999999999998877544221 122 3366667766666778888888887765432 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhcccC
Q 009045 512 HIWANLANAYYLTGDHRSSGKCLEKVLMVYCSSN 545 (546)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 545 (546)
..-...|.......++.+|...+-..+.-+.++.
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~E 226 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDILPTFESSE 226 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhccccccc
Confidence 2233456666777888999888888877776553
No 451
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=63.86 E-value=11 Score=26.61 Aligned_cols=15 Identities=20% Similarity=-0.011 Sum_probs=8.5
Q ss_pred ChhHHHHHHHHHHHH
Q 009045 166 QPLKAVSSYEKAEEI 180 (546)
Q Consensus 166 ~~~~A~~~~~~al~~ 180 (546)
.|+.|..+.++++..
T Consensus 4 ~~~~A~~~I~kaL~~ 18 (79)
T cd02679 4 YYKQAFEEISKALRA 18 (79)
T ss_pred HHHHHHHHHHHHhhh
Confidence 355566666666554
No 452
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=63.03 E-value=2.1e+02 Score=30.44 Aligned_cols=238 Identities=13% Similarity=0.037 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+-+..++.-+.+++.+...+..|-.++...|++++-...-.++.++.|-+. -.++.++.....+.
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~-----~lWl~Wl~d~~~mt--------- 161 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP-----HLWLEWLKDELSMT--------- 161 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHhhc---------
Confidence 4556677778888999999999999999999999887777777777765431 11222111111111
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHH-------HHcCChHHHHHHHHhhHhcCCC-------ChHHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLIL-------LKSGRLQSSISVLSSLLAVDPN-------NCDCI 279 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~al~~~p~-------~~~~~ 279 (546)
..++-.++...|++++.. -+.+..|...+... ...++++.-...|.+++..-.. ....+
T Consensus 162 ------~s~~~~~v~~~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~ 234 (881)
T KOG0128|consen 162 ------QSEERKEVEELFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMY 234 (881)
T ss_pred ------cCcchhHHHHHHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHH
Confidence 225568899999999853 33444554444433 4456788888889988875221 23445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH-------H
Q 009045 280 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK-------E 352 (546)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-------~ 352 (546)
..+-..|...-..++-+.++...+... -+..+ .+.-+..... .-.......+++.|. .
T Consensus 235 ~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~---~~~~~~~~sk-----------~h~~~~~~~~~~~a~~~l~~~~~ 299 (881)
T KOG0128|consen 235 REFEVTYLCNVEQRQVIALFVRELKQP-LDEDT---RGWDLSEQSK-----------AHVYDVETKKLDDALKNLAKILF 299 (881)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhh---hHHHHHHHHh-----------cchHHHHhccHHHHHHHHHHHHH
Confidence 555566666666677777777777654 22221 1111110000 000011233344443 3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 353 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 353 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
.+++.+...+.-...|..+..-....|+...-...+++++...+.+...|...+.
T Consensus 300 ~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~ 354 (881)
T KOG0128|consen 300 KFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGV 354 (881)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhh
Confidence 4455555555555667777777788899888888899998888877777665543
No 453
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=62.02 E-value=16 Score=25.88 Aligned_cols=35 Identities=29% Similarity=0.129 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 493 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 493 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
|+.|..+..+++..+ ..|+.++|+.+|+++++.+.
T Consensus 5 ~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 5 YKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHHHH
Confidence 455555555555443 34777777777777777664
No 454
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=61.23 E-value=2.2e+02 Score=29.93 Aligned_cols=91 Identities=20% Similarity=0.153 Sum_probs=33.7
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCc
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 326 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 326 (546)
..-.++.-.|+|+.|++++-+ .+.+..--..+|.++...|-+.-....-...+..++.++.. .+++.+....
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y--- 334 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQY--- 334 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHH---
T ss_pred HHHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHH---
Confidence 344567788999999998877 22332222333444444444333333225566666555433 4444443311
Q ss_pred cccccccccccchHHHhhcCHHHHHHHHHHH
Q 009045 327 VLAGAGANTGEGACLDQASAVNVAKECLLAA 357 (546)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 357 (546)
.. .....+..+|+++|--.
T Consensus 335 -----------~~-~F~~td~~~Al~Y~~li 353 (613)
T PF04097_consen 335 -----------TR-SFEITDPREALQYLYLI 353 (613)
T ss_dssp -----------HH-TTTTT-HHHHHHHHHGG
T ss_pred -----------HH-HHhccCHHHHHHHHHHH
Confidence 00 11456677777776543
No 455
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=60.43 E-value=20 Score=20.79 Aligned_cols=28 Identities=29% Similarity=0.193 Sum_probs=16.4
Q ss_pred HHHHHHH--HHHHhcC-----ChHHHHHHHHHHHH
Q 009045 512 HIWANLA--NAYYLTG-----DHRSSGKCLEKVLM 539 (546)
Q Consensus 512 ~~~~~lg--~~~~~~g-----~~~~A~~~~~~al~ 539 (546)
.+.+.+| .+|..-. +.++|+.+|+++.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4566677 4433222 35777777777765
No 456
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.03 E-value=1e+02 Score=32.27 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH------HHHHHHHHHHhhCccccccccccccchHHHhhcCHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA------LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN 348 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (546)
.++...++-..|....+|+.-++..+.. +.-|+.... .+.++.++.++ .+-|+-+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRR------------------Nr~GDRa 260 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRR------------------NRPGDRA 260 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhccc------------------CCCccHH
Confidence 3556667777788888888777766554 333432211 11112222111 1578899
Q ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHH---------cCChHHHHHHHHHHHhcCCCCh
Q 009045 349 VAKECLLAALKADP-KAAHIWANLANAYYL---------TGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 349 ~A~~~~~~al~~~p-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~al~~~p~~~ 399 (546)
+|+...-.+++... -.++.+...|++|.. .+..+.|+..|+++++..|...
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~ 321 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY 321 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh
Confidence 99998888887643 356667777777754 3556889999999999999643
No 457
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=59.91 E-value=25 Score=19.43 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 513 IWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
.|..+-.++.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466677777888888888888877654
No 458
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=59.82 E-value=1.4e+02 Score=34.20 Aligned_cols=150 Identities=18% Similarity=0.152 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccc---cCCC-------------
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES---SGDN------------- 213 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~------------- 213 (546)
.......+|..+...|++.+|++.|..|+....... |++=++.++-+++.+... .|..
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~------D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~ 314 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSN------DYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPI 314 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcC------cHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCC
Confidence 466778899999999999999999999999854432 222112222222111000 0000
Q ss_pred ------------c------------------------cccccChhhHHHHHHHHHHHHhc----Ccc--cHHHHHHHHHH
Q 009045 214 ------------S------------------------LDKELEPEELEEILSKLKESMQS----DTR--QAVVWNTLGLI 251 (546)
Q Consensus 214 ------------~------------------------~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~l~~~ 251 (546)
. .-...-...+++++.+|.++... .|. ..++....+.+
T Consensus 315 ~~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~ 394 (1185)
T PF08626_consen 315 SSSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARF 394 (1185)
T ss_pred CCccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHH
Confidence 0 00011234578888888888632 222 24566677777
Q ss_pred HHHcC--------------------ChHHHHHHHHhhHhcCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 252 LLKSG--------------------RLQSSISVLSSLLAVDPN------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 252 ~~~~g--------------------~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
+.... .-.++.+...+++..... ....+..+|.+|..+|-..++.-+.+.++..
T Consensus 395 l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 395 LVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 77777 677888888888776432 2567889999999999988888777777654
No 459
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=59.02 E-value=20 Score=25.18 Aligned_cols=15 Identities=20% Similarity=-0.071 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHh
Q 009045 167 PLKAVSSYEKAEEIL 181 (546)
Q Consensus 167 ~~~A~~~~~~al~~~ 181 (546)
+++|+..+.+|++.+
T Consensus 3 l~~Ai~lv~~Av~~D 17 (75)
T cd02684 3 LEKAIALVVQAVKKD 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888888764
No 460
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.92 E-value=1.6e+02 Score=27.67 Aligned_cols=28 Identities=21% Similarity=0.128 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 367 IWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
+.+.+|.-|+...+++.|.--|+++...
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 4556677777777777777777777654
No 461
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=57.82 E-value=57 Score=25.35 Aligned_cols=66 Identities=18% Similarity=0.057 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH----hh
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLGIAYFQSGDMEQSAKCFQDLI----LK 305 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al----~~ 305 (546)
+..+|...++.+++-.++-.|++|+.+..+- .....+||..+..+|+.+-.+++++-|- .+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888888899989999998888752211 2346789999999999999999886554 44
Q ss_pred CCCCH
Q 009045 306 DQNHP 310 (546)
Q Consensus 306 ~p~~~ 310 (546)
-|..+
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 55543
No 462
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=57.63 E-value=1.6e+02 Score=27.10 Aligned_cols=121 Identities=7% Similarity=0.010 Sum_probs=70.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcC
Q 009045 159 LMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD 238 (546)
Q Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~ 238 (546)
..+...++|++=...|.+......++.... .+ + ...+...+ ...+.. .......-...++.-++..
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e-~~-Y---~~~~~~~~--l~D~~~-------~~~~~~~~~~~LkaWv~a~ 73 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGE-QR-Y---FRAWMSST--LFDMDS-------VVDAWQARLAVLKAWVAAC 73 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCcc-ch-H---HHHHhhcc--ccCcch-------hhhHHHhHHHHHHHHHHHC
Confidence 446678889888888888876533221111 11 1 11111111 000100 0011124566777778899
Q ss_pred cccHHHHHHHHHHHHHcC----------------------ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 239 TRQAVVWNTLGLILLKSG----------------------RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
|++..++..+|..+.... -.+.|...+.+++.++|....+...+-.+-...|+.+
T Consensus 74 P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 74 PKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred CCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 999999999888876532 2456667777777777777777777666666666654
No 463
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=57.08 E-value=30 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEIL 181 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 181 (546)
.+...|.-+-..|++++|+.+|.++++..
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45566777788999999999999999873
No 464
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=56.68 E-value=21 Score=24.96 Aligned_cols=15 Identities=33% Similarity=0.065 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHh
Q 009045 167 PLKAVSSYEKAEEIL 181 (546)
Q Consensus 167 ~~~A~~~~~~al~~~ 181 (546)
+++|+.++.+|++.+
T Consensus 3 ~~~A~~l~~~Av~~D 17 (75)
T cd02678 3 LQKAIELVKKAIEED 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777777653
No 465
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=55.94 E-value=29 Score=24.32 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=13.2
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHH
Q 009045 482 GESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
..|..+...|++++|+.+|.++++
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555666666666665543
No 466
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=55.59 E-value=1.8e+02 Score=27.17 Aligned_cols=141 Identities=13% Similarity=0.021 Sum_probs=78.4
Q ss_pred HcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-------------HHHHHHH
Q 009045 254 KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL----KDQNH-------------PAALINY 316 (546)
Q Consensus 254 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~-------------~~~~~~l 316 (546)
..+++.+.++..++.+..+|-..+.++..+.+..++| ++.+.......+. ..|.- ..+..-+
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL 189 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWL 189 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHH
Confidence 5566677777777777777777777777777777777 3444444333322 12211 1111111
Q ss_pred HHHHHHhhC-ccc--------cccccccccchHHHhhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHH
Q 009045 317 AALLLCKYG-SVL--------AGAGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 317 ~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A 384 (546)
...-....+ ... .........+......+.++.|+..++..+...+. .....+.++.++...|.++-|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA 269 (301)
T TIGR03362 190 AQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELA 269 (301)
T ss_pred HhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 100000000 000 00000011234445778899999999876654333 334556778999999999999
Q ss_pred HHHHHHHHhcC
Q 009045 385 GKCLEKAAKLE 395 (546)
Q Consensus 385 ~~~~~~al~~~ 395 (546)
...|+...+.-
T Consensus 270 ~~ll~~L~~~~ 280 (301)
T TIGR03362 270 QQLYAALDQQI 280 (301)
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 467
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=55.42 E-value=2e+02 Score=27.77 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=40.8
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCC-----ChHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPN-----NCDCIGNLGIA--YFQSGDMEQSAKCFQD 301 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~--~~~~g~~~~A~~~~~~ 301 (546)
.+..++..++|..|...|..++...+. ....+..+... ++..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 556788999999999999999987542 23344555444 4678889999999986
No 468
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=54.81 E-value=42 Score=35.04 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=72.8
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhcCCCC----hHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQ--SGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.-|+.+++.+++..|.--|..++.+-|.+ .....+.+.++.. .|+|..++.--.-++...|....++...+..|
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y 137 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKY 137 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHH
Confidence 34777788888888877777777776632 3445556666654 56778888888888888887777776655555
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
. ..+.++-|++...-.....|.+..+......
T Consensus 138 ~---------------------al~k~d~a~rdl~i~~~~~p~~~~~~eif~e 169 (748)
T KOG4151|consen 138 E---------------------ALNKLDLAVRDLRIVEKMDPSNVSASEIFEE 169 (748)
T ss_pred H---------------------HHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Confidence 5 5666788888877777778877555443333
No 469
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=53.28 E-value=79 Score=31.83 Aligned_cols=48 Identities=6% Similarity=0.164 Sum_probs=33.2
Q ss_pred hHHHHHHHHhhHhc-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 258 LQSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 258 ~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
-..++..|.+++.. +..+..-|..+|..|++.+++.+|+..+-.+-..
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777764 3345667888999999999999999988887643
No 470
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.95 E-value=60 Score=24.08 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
+..+-.||.+|...|+.+.|..-|+.--.+++.|
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 5566677777777777777777777666666654
No 471
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=52.26 E-value=69 Score=32.72 Aligned_cols=78 Identities=6% Similarity=0.167 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
....+.+....+.-+......+...+..+..+...+..+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 344566666666655555555667777788888888888888888888888887 667777777888887777777666
No 472
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=52.11 E-value=46 Score=25.83 Aligned_cols=64 Identities=20% Similarity=0.117 Sum_probs=46.7
Q ss_pred cchHHHhhcCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHH----HhcCCC
Q 009045 337 EGACLDQASAVNVAKECLLAALKADPK---------------AAHIWANLANAYYLTGDHRSSGKCLEKA----AKLEPN 397 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a----l~~~p~ 397 (546)
+|....+.+++-.++-+|++|+.+..+ .+....+||..+..+|+.+-.+++++-+ +.+-|.
T Consensus 7 lAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQ 86 (140)
T PF10952_consen 7 LADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQ 86 (140)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccC
Confidence 344555888888899999988865322 2345678999999999999999988654 556666
Q ss_pred Chh
Q 009045 398 CMS 400 (546)
Q Consensus 398 ~~~ 400 (546)
.+.
T Consensus 87 Cp~ 89 (140)
T PF10952_consen 87 CPN 89 (140)
T ss_pred CCC
Confidence 553
No 473
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.70 E-value=3.9e+02 Score=29.98 Aligned_cols=176 Identities=10% Similarity=-0.031 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH----------------------HHHHhhhccCchhH
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS----------------------RIKDAERSQEPTEQ 422 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~----------------------~l~~~~~~~~~~~~ 422 (546)
+...+.+|.+|...|+..+|+.+|.+|..-..+.. ++..+... ++....+..+....
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 44566788888888899999999888875433221 22111111 11111111111111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc-chhhhHHhhHHHHHHHhccHH-------
Q 009045 423 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS-KMEECAGAGESAFLDQASAVN------- 494 (546)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~la~~~~~~g~~~------- 494 (546)
......-....+.......|..+..+..+-..+...|.+-+|+....+.-+ ......+-.+-.++++.|.++
T Consensus 999 ~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpf 1078 (1480)
T KOG4521|consen 999 AEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPF 1078 (1480)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCc
Confidence 111222233445555555666666777777778889999999888776444 222244556666777777743
Q ss_pred -----HHHH-HHHHHHHhCCCC-HHHHHHHHHHHHhcCChHHHHH-HHHHHHHHh
Q 009045 495 -----VAKE-CLLAALKADPKA-AHIWANLANAYYLTGDHRSSGK-CLEKVLMVY 541 (546)
Q Consensus 495 -----~A~~-~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~ 541 (546)
+-.. .++++-...|-. ...|..|--.+...+++.+|-. +|+.+..+-
T Consensus 1079 igl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1079 IGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred cchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 2222 334444444433 3344444455578888888765 566666543
No 474
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=51.70 E-value=40 Score=18.51 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 009045 496 AKECLLAALKADPKAAHIWANLANAYYLT 524 (546)
Q Consensus 496 A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 524 (546)
.+++..+++..+|.+..+|..+-.+....
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 46778899999999999999887776543
No 475
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=51.52 E-value=39 Score=23.61 Aligned_cols=24 Identities=21% Similarity=0.057 Sum_probs=13.6
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHH
Q 009045 482 GESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
..|.-....|++++|+.+|.++++
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445556666666666666544
No 476
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=51.40 E-value=2.1e+02 Score=26.73 Aligned_cols=48 Identities=10% Similarity=-0.048 Sum_probs=37.8
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 391 (546)
..+++.+.++..++.+..+|--.+.++..+.++.++| ++.+.......
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~e 158 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDE 158 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 4566788888888888889998999999999999999 55555554443
No 477
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=51.36 E-value=39 Score=26.34 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhccc
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRC 184 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 184 (546)
..+|..+...|++++|..+|-+|+...|++
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 458999999999999999999999997654
No 478
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=50.14 E-value=24 Score=33.62 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChH-----HHHHHHHHHHHHhc
Q 009045 493 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR-----SSGKCLEKVLMVYC 542 (546)
Q Consensus 493 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~~ 542 (546)
..+|++++++|.. .+.|+.|..+|.++..+|+.- +=..+|++|-+++.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~ 386 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILK 386 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHH
Confidence 6788888888876 456788888888888777642 22345555555543
No 479
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.92 E-value=1.2e+02 Score=29.43 Aligned_cols=100 Identities=18% Similarity=0.112 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhc-----------CCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAV-----------DPNNCDCIGNLGIAYFQSGDM----------EQSAKCFQDL 302 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a 302 (546)
.++..|.+.+....|++|+.++-.|-+. -.+.+..-..+.++|+.+.+. ..|.+.|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 4455677888888899988877665332 223344555677888877653 3344444443
Q ss_pred Hhh---------CCCCHH-HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 303 ILK---------DQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 303 l~~---------~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
.-- .+..++ +++..-.++ .|.+.+..|+-++|.++++.+..
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LL----------------QGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELL----------------QGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHH----------------HHHHHHHcCCcHHHHHHHHHHHH
Confidence 311 122222 222222222 27777799999999999998764
No 480
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.89 E-value=2.3e+02 Score=30.56 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHhccc----chhccc-hhhHHHHHHHhhccccccccCCCccccccChhhHHHH-
Q 009045 154 HFLLGLMYQRLGQPLKAVSSYEKAEEILLRC----EADIAR-PELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI- 227 (546)
Q Consensus 154 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A- 227 (546)
-...|.-....|++.+|++.|+.++-.-|-- ...... ........ -+..|+......+ -+..++.+++
T Consensus 994 kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~-eYi~gL~~E~~Rr-----~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 994 KLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICR-EYIVGLSVELERR-----KLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHH-HHHhhheeeeeec-----ccCCchHHHHH
Confidence 3456667778999999999999998764421 000000 01111111 1122222111111 2344555555
Q ss_pred -HHHHHHHHhcCcccHH-HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHH
Q 009045 228 -LSKLKESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 278 (546)
Q Consensus 228 -~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 278 (546)
+..|-.-..+.|-+.. ++..--.++++.+++..|-..-.+.+++.|..+.+
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 3333333445554433 34444456788888888888888888888876544
No 481
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=48.82 E-value=1.4e+02 Score=23.83 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=26.4
Q ss_pred HHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 253 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 253 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
...+.....+.+++.++..++.++..+..+..+|... +..+.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3445666666666666666655566666666666543 2333444443
No 482
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=48.26 E-value=32 Score=35.83 Aligned_cols=113 Identities=13% Similarity=0.056 Sum_probs=81.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHh
Q 009045 157 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 236 (546)
Q Consensus 157 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~ 236 (546)
-|...+..+++.+|.--|..++.+.|.+ +.+.. ..+.+.+.++. .+..+++..++.-..-++.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~-----~~~~a---~~~~~~~s~~m---------~~~l~~~~~~~~E~~la~~ 121 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKD-----HHVVA---TLRSNQASCYM---------QLGLGEYPKAIPECELALE 121 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheecccc-----chhhh---hHHHHHHHHHh---------hcCccchhhhcCchhhhhh
Confidence 3566677788888888888888887644 22221 22222222222 2455677999999999999
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 286 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 286 (546)
..|....+++..+.+|...+.++-|++...-.....|.+..+......++
T Consensus 122 ~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 122 SQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred ccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999998888888998865544433333
No 483
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=47.55 E-value=86 Score=24.68 Aligned_cols=38 Identities=11% Similarity=-0.036 Sum_probs=27.9
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 009045 486 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 523 (546)
Q Consensus 486 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 523 (546)
.++..-+.+.|...|+..++..|++..++..+-..+..
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 44455567899999999999999999988887776644
No 484
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=47.38 E-value=35 Score=32.62 Aligned_cols=47 Identities=15% Similarity=0.014 Sum_probs=34.9
Q ss_pred cHHHHHHHHHhhccchhhhHHhhHHHHHHHhcc------------HHHHHHHHHHHHHh
Q 009045 460 EVAAAFETEENELSKMEECAGAGESAFLDQASA------------VNVAKECLLAALKA 506 (546)
Q Consensus 460 ~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~ 506 (546)
-+.+|+.++.++.....+..|..+|.++..+|+ |.+|...+.+|-..
T Consensus 333 l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 333 LIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 456777788888888888888888888888887 67777777777553
No 485
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=46.90 E-value=1e+02 Score=21.78 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 009045 448 WAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 511 (546)
Q Consensus 448 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 511 (546)
+...|.-....|++++|+..| .+|+..|..+++..|+..
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y-------------------------~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCY-------------------------QEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHH-------------------------HHHHHHHHHHHhhCCCHH
Confidence 455666777888888887764 567888888888777653
No 486
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.77 E-value=3.8e+02 Score=28.38 Aligned_cols=210 Identities=10% Similarity=0.016 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhhHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHhhCcccccc
Q 009045 257 RLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL---ILKDQNHPAALINYAALLLCKYGSVLAGA 331 (546)
Q Consensus 257 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 331 (546)
...+++...+...+- .|+...+-.....+|+.+|+|++|+++--.+ +..+++........+.+.-..
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~y-------- 109 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMY-------- 109 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHH--------
Q ss_pred ccccccchHHHhhcCHHHHHHHHH--H-HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009045 332 GANTGEGACLDQASAVNVAKECLL--A-ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 408 (546)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~A~~~~~--~-al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 408 (546)
.+++.+.+. + .--+++.-......+-.-....++|..|+-+.-+.-+++-
T Consensus 110 ---------------i~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~------------ 162 (929)
T KOG2062|consen 110 ---------------IETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDI------------ 162 (929)
T ss_pred ---------------HHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHH------------
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHH
Q 009045 409 RIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLD 488 (546)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~ 488 (546)
+...+-..+...-.....+..+-.+-...+-..+-+...-+...+.+..-++.+..||.
T Consensus 163 ---------------------ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v 221 (929)
T KOG2062|consen 163 ---------------------IEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYV 221 (929)
T ss_pred ---------------------HHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeE
Q ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 009045 489 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 524 (546)
Q Consensus 489 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 524 (546)
.+.+.+.+...+++.++ .++.-.-+.++.-+...
T Consensus 222 ~Ldd~~~va~ll~kL~~--e~~~llayQIAFDL~es 255 (929)
T KOG2062|consen 222 FLDDAEAVADLLEKLVK--EDDLLLAYQIAFDLYES 255 (929)
T ss_pred EcCCHHHHHHHHHHHHh--cchhhhHHHHHHHHhhc
No 487
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.02 E-value=2.6e+02 Score=26.34 Aligned_cols=107 Identities=8% Similarity=-0.077 Sum_probs=60.8
Q ss_pred HHHHHHHHHhCCCCHHHH---HHHHHHHHHcCChhHHHHHHHHHHHHhcccchhc-cchhhHHHHHHHhhccccccccCC
Q 009045 137 EKGLVHVARKMPKNAHAH---FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADI-ARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 137 ~~~~~~~l~~~p~~~~~~---~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
...|++..+.-|++.... ..-|.++...|+|.+....|..+-.......+.. ..+...
T Consensus 41 ~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A------------------ 102 (449)
T COG3014 41 KKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGA------------------ 102 (449)
T ss_pred hhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccc------------------
Confidence 346777777777654433 3458889999999988887776654422211100 000000
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCChHHHHHHHHhhHhc
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAV 271 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 271 (546)
.+-.+.-.=+...+.+|.. ....+.+|.-|+...+++.|.-.|.++...
T Consensus 103 ----------~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 103 ----------GYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred ----------cchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 0011111111222233333 235667888999999999999999988764
No 488
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=45.67 E-value=2.4e+02 Score=25.86 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc-ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA-GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
-...++.-++..|+...++..+|..+....-..-. .....+..........-.+.|...+.+++.++|....+...+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 34455555566676666666666655432000000 00000111111222333577888888888888888877777777
Q ss_pred HHHHcCChH
Q 009045 374 AYYLTGDHR 382 (546)
Q Consensus 374 ~~~~~g~~~ 382 (546)
+-...|...
T Consensus 142 ~s~~fgeP~ 150 (277)
T PF13226_consen 142 ISAYFGEPD 150 (277)
T ss_pred HHhhcCCch
Confidence 766666654
No 489
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=45.60 E-value=53 Score=23.02 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=12.5
Q ss_pred HHHHHHHhccHHHHHHHHHHHHH
Q 009045 483 ESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 483 la~~~~~~g~~~~A~~~~~~al~ 505 (546)
.|.-....|++++|+.+|..+++
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 33445555556666666665544
No 490
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=45.58 E-value=59 Score=33.94 Aligned_cols=13 Identities=15% Similarity=-0.033 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHhc
Q 009045 170 AVSSYEKAEEILL 182 (546)
Q Consensus 170 A~~~~~~al~~~p 182 (546)
+...++..++..|
T Consensus 731 se~~iqnLik~lP 743 (1102)
T KOG1924|consen 731 SESMIQNLIKHLP 743 (1102)
T ss_pred HHHHHHHHHHhCC
Confidence 3344444444433
No 491
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=45.56 E-value=5.4e+02 Score=29.78 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=60.6
Q ss_pred cHHHHHHHHHhhccc--------hhhhHHhhHHHHHHHhc--------------------cHHHHHHHHHHHHHhCCC--
Q 009045 460 EVAAAFETEENELSK--------MEECAGAGESAFLDQAS--------------------AVNVAKECLLAALKADPK-- 509 (546)
Q Consensus 460 ~~~~A~~~~~~~l~~--------~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~al~~~p~-- 509 (546)
.+++++..|.+.... ...++...++..+.... .-.++..++.+++.....
T Consensus 360 ~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l 439 (1185)
T PF08626_consen 360 LYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL 439 (1185)
T ss_pred HHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC
Confidence 468888899886521 12245556666666666 677888888888875543
Q ss_pred ----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 510 ----AAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 510 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
....+..+|.+|...|-..++.-+.+.++..+
T Consensus 440 ~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 440 SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 26678899999999999999888888887766
No 492
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=44.87 E-value=64 Score=19.55 Aligned_cols=33 Identities=15% Similarity=0.323 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHH
Q 009045 138 KGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKA 170 (546)
Q Consensus 138 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 170 (546)
..|..++-.+|.+...+...|..+...|+...|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 467789999999999999999999999998654
No 493
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=44.50 E-value=1.6e+02 Score=23.27 Aligned_cols=29 Identities=7% Similarity=-0.165 Sum_probs=16.7
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHHhCC
Q 009045 480 GAGESAFLDQASAVNVAKECLLAALKADP 508 (546)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 508 (546)
+..+..+|...|++..|+++.....+..|
T Consensus 55 L~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 55 LIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 44555555556666666666665555555
No 494
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.72 E-value=8.4e+02 Score=31.53 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=40.6
Q ss_pred hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCC----hHHHHHHHHHHHHHhc
Q 009045 477 ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGD----HRSSGKCLEKVLMVYC 542 (546)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~----~~~A~~~~~~al~~~~ 542 (546)
.......|....+.|+.++|-..|..|++++-..+.+|...|..... .+. -..|+.+|=+|...+.
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~ 2885 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYN 2885 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhcccc
Confidence 34455566677777888888888888887777777777776665422 122 1245555555555443
No 495
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.10 E-value=93 Score=33.20 Aligned_cols=74 Identities=24% Similarity=0.349 Sum_probs=52.6
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
.++..++.|+++.|++...+. ++++.|..||..-+.+|+.+-|.-+|++.-.. -.|..+|.-.|+.+
T Consensus 649 RF~LaLe~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knf--------ekLsfLYliTgn~e 715 (1202)
T KOG0292|consen 649 RFELALECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMCYQRTKNF--------EKLSFLYLITGNLE 715 (1202)
T ss_pred heeeehhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhh--------hheeEEEEEeCCHH
Confidence 445567889999999887664 56789999999999999999999999986432 23344444555555
Q ss_pred HHHHHHH
Q 009045 294 QSAKCFQ 300 (546)
Q Consensus 294 ~A~~~~~ 300 (546)
+-.+...
T Consensus 716 KL~Km~~ 722 (1202)
T KOG0292|consen 716 KLSKMMK 722 (1202)
T ss_pred HHHHHHH
Confidence 4444433
No 496
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=42.64 E-value=64 Score=18.25 Aligned_cols=26 Identities=15% Similarity=0.447 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 291 DMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
.++.|...|++.+...|+ +..|+..+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 356667777777666654 44454444
No 497
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=41.59 E-value=1.4e+02 Score=22.68 Aligned_cols=50 Identities=24% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 291 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 291 (546)
.......|.+-...|++..|.+...++-+..+...-.+..-+.+-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
No 498
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.78 E-value=1.8e+02 Score=22.92 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=20.9
Q ss_pred HHHHHHhhHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 261 SISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 261 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
+.+.|.-+... ....+..|...|..+...|++.+|.+.|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444332 23344455555666666666666666654
No 499
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.61 E-value=3.5e+02 Score=26.22 Aligned_cols=28 Identities=14% Similarity=-0.138 Sum_probs=23.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 370 NLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
..+..++..++|..|...|..++...+.
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~ 162 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLS 162 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccC
Confidence 3455788999999999999999987654
No 500
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=40.47 E-value=60 Score=25.31 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhcCCCCh
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAVDPNNC 276 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 276 (546)
..+|..+...|++++|..+|-+|+...|+-.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 3478888888888888888888888877643
Done!