Query 009045
Match_columns 546
No_of_seqs 924 out of 4447
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 17:34:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 4.1E-40 1.4E-44 321.3 37.4 357 94-541 6-369 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-37 6E-42 302.7 36.6 344 92-526 38-388 (388)
3 2gw1_A Mitochondrial precursor 100.0 8.2E-35 2.8E-39 294.9 34.3 373 91-543 10-481 (514)
4 2xpi_A Anaphase-promoting comp 100.0 5.5E-34 1.9E-38 294.5 38.2 350 151-543 200-582 (597)
5 3fp2_A TPR repeat-containing p 100.0 2.8E-34 9.7E-39 292.6 35.5 379 91-543 29-494 (537)
6 2y4t_A DNAJ homolog subfamily 100.0 7E-34 2.4E-38 283.0 35.4 331 135-543 10-361 (450)
7 3ieg_A DNAJ homolog subfamily 100.0 2.4E-33 8.3E-38 270.1 37.8 316 150-543 2-338 (359)
8 2y4t_A DNAJ homolog subfamily 100.0 1.2E-33 4.2E-38 281.3 33.6 324 134-543 43-413 (450)
9 3ieg_A DNAJ homolog subfamily 100.0 8.2E-32 2.8E-36 259.4 36.9 307 134-526 20-355 (359)
10 4g1t_A Interferon-induced prot 100.0 1.8E-32 6E-37 274.7 30.3 364 149-543 49-462 (472)
11 2xpi_A Anaphase-promoting comp 100.0 2.2E-32 7.5E-37 282.5 28.0 401 92-543 89-548 (597)
12 3hym_B Cell division cycle pro 100.0 2.4E-31 8.3E-36 253.0 30.8 307 141-528 12-322 (330)
13 2gw1_A Mitochondrial precursor 100.0 7.3E-31 2.5E-35 265.9 29.3 336 150-543 5-447 (514)
14 1fch_A Peroxisomal targeting s 100.0 3E-31 1E-35 256.6 23.5 282 139-543 48-362 (368)
15 3hym_B Cell division cycle pro 100.0 9.8E-30 3.3E-34 241.9 28.3 258 219-543 33-302 (330)
16 3fp2_A TPR repeat-containing p 100.0 1.7E-29 5.8E-34 257.3 32.0 195 289-544 215-411 (537)
17 4eqf_A PEX5-related protein; a 100.0 1.9E-30 6.5E-35 250.7 21.3 271 150-542 64-358 (365)
18 2h6f_A Protein farnesyltransfe 100.0 4.8E-30 1.6E-34 245.6 23.3 260 143-524 89-366 (382)
19 4g1t_A Interferon-induced prot 100.0 3.6E-29 1.2E-33 250.6 27.4 343 134-519 68-472 (472)
20 3cv0_A Peroxisome targeting si 100.0 7.6E-29 2.6E-33 235.4 25.2 272 150-543 20-318 (327)
21 1fch_A Peroxisomal targeting s 100.0 1.2E-28 4.1E-33 238.3 24.7 260 219-544 36-318 (368)
22 2pl2_A Hypothetical conserved 100.0 5.9E-28 2E-32 214.2 24.7 212 239-539 2-213 (217)
23 2h6f_A Protein farnesyltransfe 100.0 2.1E-28 7.4E-33 234.1 22.8 241 234-542 89-350 (382)
24 4eqf_A PEX5-related protein; a 100.0 8.4E-28 2.9E-32 232.1 23.7 251 228-543 47-313 (365)
25 2xm6_A Protein corresponding t 100.0 1.7E-24 5.7E-29 217.3 43.2 349 132-541 58-433 (490)
26 2pl2_A Hypothetical conserved 100.0 2.7E-27 9.4E-32 209.9 19.7 201 148-393 2-213 (217)
27 3u4t_A TPR repeat-containing p 99.9 3.5E-26 1.2E-30 211.0 24.7 259 151-525 3-269 (272)
28 2xm6_A Protein corresponding t 99.9 2.2E-24 7.6E-29 216.4 38.6 374 100-537 56-468 (490)
29 3uq3_A Heat shock protein STI1 99.9 1.3E-25 4.5E-30 205.2 26.4 227 150-541 4-237 (258)
30 3cv0_A Peroxisome targeting si 99.9 1.3E-25 4.3E-30 213.1 24.0 276 90-397 24-318 (327)
31 3sf4_A G-protein-signaling mod 99.9 2.9E-26 9.9E-31 224.6 19.3 308 148-535 6-371 (406)
32 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.1E-24 3.9E-29 201.1 27.7 245 218-534 15-269 (275)
33 2ooe_A Cleavage stimulation fa 99.9 4.5E-24 1.5E-28 216.4 34.5 400 111-543 2-495 (530)
34 3mkr_A Coatomer subunit epsilo 99.9 1.8E-24 6.1E-29 200.5 27.7 254 218-544 9-268 (291)
35 3u4t_A TPR repeat-containing p 99.9 3.5E-25 1.2E-29 204.2 22.8 234 243-544 4-254 (272)
36 3mkr_A Coatomer subunit epsilo 99.9 1.7E-24 5.6E-29 200.7 26.7 223 134-406 16-241 (291)
37 4a1s_A PINS, partner of inscut 99.9 2.1E-25 7E-30 219.0 21.5 281 149-543 46-375 (411)
38 4abn_A Tetratricopeptide repea 99.9 9.3E-25 3.2E-29 217.2 24.0 224 222-536 82-317 (474)
39 3uq3_A Heat shock protein STI1 99.9 3E-24 1E-28 196.2 25.0 227 134-406 22-254 (258)
40 1ouv_A Conserved hypothetical 99.9 2.4E-23 8.3E-28 192.0 30.5 229 238-543 2-254 (273)
41 2q7f_A YRRB protein; TPR, prot 99.9 3.5E-24 1.2E-28 193.9 23.0 210 218-526 33-242 (243)
42 3sf4_A G-protein-signaling mod 99.9 1.1E-24 3.9E-29 213.2 20.6 264 219-543 20-339 (406)
43 2ooe_A Cleavage stimulation fa 99.9 6.3E-23 2.1E-27 208.0 33.0 364 140-541 2-455 (530)
44 3vtx_A MAMA; tetratricopeptide 99.9 1.3E-23 4.4E-28 181.4 23.6 144 235-399 32-175 (184)
45 3vtx_A MAMA; tetratricopeptide 99.9 1.4E-23 4.9E-28 181.1 23.4 144 240-404 3-146 (184)
46 3ro2_A PINS homolog, G-protein 99.9 1.8E-24 6.1E-29 205.8 19.1 282 151-544 5-336 (338)
47 2ho1_A Type 4 fimbrial biogene 99.9 4.7E-23 1.6E-27 187.6 27.3 209 236-543 30-241 (252)
48 2q7f_A YRRB protein; TPR, prot 99.9 2E-23 7E-28 188.8 23.3 205 241-544 22-226 (243)
49 2ho1_A Type 4 fimbrial biogene 99.9 3.5E-23 1.2E-27 188.5 24.3 214 146-403 31-247 (252)
50 1ouv_A Conserved hypothetical 99.9 2.5E-22 8.5E-27 185.2 30.1 234 147-514 2-259 (273)
51 2vq2_A PILW, putative fimbrial 99.9 1.8E-22 6E-27 180.2 28.2 207 237-542 3-213 (225)
52 2vq2_A PILW, putative fimbrial 99.9 1.1E-22 3.6E-27 181.7 25.2 215 146-404 3-221 (225)
53 3e4b_A ALGK; tetratricopeptide 99.9 3.9E-23 1.3E-27 204.2 23.3 341 94-539 10-386 (452)
54 2ond_A Cleavage stimulation fa 99.9 4.5E-22 1.5E-26 186.7 27.8 220 225-511 33-275 (308)
55 4i17_A Hypothetical protein; T 99.9 5.5E-22 1.9E-26 177.6 27.2 211 239-523 4-226 (228)
56 4abn_A Tetratricopeptide repea 99.9 2.1E-23 7.1E-28 207.5 18.2 213 134-391 85-318 (474)
57 2ond_A Cleavage stimulation fa 99.9 3.3E-22 1.1E-26 187.6 25.4 224 134-401 33-277 (308)
58 4gyw_A UDP-N-acetylglucosamine 99.9 4.7E-23 1.6E-27 212.3 20.8 174 146-397 4-177 (723)
59 4gyw_A UDP-N-acetylglucosamine 99.9 1.2E-22 4E-27 209.4 23.0 144 237-401 4-147 (723)
60 4a1s_A PINS, partner of inscut 99.9 5.8E-23 2E-27 201.5 19.6 225 134-396 65-334 (411)
61 3e4b_A ALGK; tetratricopeptide 99.9 5.4E-22 1.9E-26 196.0 25.4 324 155-540 7-351 (452)
62 4i17_A Hypothetical protein; T 99.9 6.1E-22 2.1E-26 177.3 23.5 191 147-407 3-222 (228)
63 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.2E-22 4.2E-27 187.4 18.9 221 133-399 21-249 (275)
64 3ulq_A Response regulator aspa 99.9 4.7E-22 1.6E-26 193.0 23.5 320 151-543 12-371 (383)
65 3ro2_A PINS homolog, G-protein 99.9 1.1E-22 3.9E-27 193.3 18.0 226 134-397 22-295 (338)
66 3nf1_A KLC 1, kinesin light ch 99.9 5E-22 1.7E-26 186.8 15.3 248 237-543 22-310 (311)
67 3ulq_A Response regulator aspa 99.9 9E-21 3.1E-25 183.9 24.6 228 219-508 114-370 (383)
68 3dra_A Protein farnesyltransfe 99.9 5.9E-20 2E-24 168.5 28.2 229 225-520 50-302 (306)
69 3qky_A Outer membrane assembly 99.9 1.1E-20 3.9E-25 172.8 22.1 219 235-531 8-252 (261)
70 4ga2_A E3 SUMO-protein ligase 99.9 2.6E-21 8.9E-26 160.1 15.0 142 218-380 7-149 (150)
71 3nf1_A KLC 1, kinesin light ch 99.9 5.4E-21 1.8E-25 179.7 18.9 253 147-509 23-310 (311)
72 1qqe_A Vesicular transport pro 99.9 4.9E-21 1.7E-25 178.0 18.2 204 134-400 2-234 (292)
73 2pzi_A Probable serine/threoni 99.9 2.5E-21 8.7E-26 200.9 17.5 203 236-541 388-599 (681)
74 3q15_A PSP28, response regulat 99.9 5.4E-20 1.9E-24 178.0 25.0 243 244-542 103-367 (378)
75 3dra_A Protein farnesyltransfe 99.9 1.1E-19 3.8E-24 166.7 25.5 232 134-406 50-300 (306)
76 3qky_A Outer membrane assembly 99.9 2.7E-20 9.4E-25 170.2 21.1 201 144-402 8-232 (261)
77 1hz4_A MALT regulatory protein 99.9 2.6E-19 8.9E-24 173.0 27.9 281 151-543 14-325 (373)
78 3urz_A Uncharacterized protein 99.9 7.3E-20 2.5E-24 160.8 20.9 189 150-399 3-191 (208)
79 3edt_B KLC 2, kinesin light ch 99.8 3.7E-21 1.3E-25 178.0 11.0 237 220-540 13-281 (283)
80 3urz_A Uncharacterized protein 99.8 5.7E-20 2E-24 161.5 17.2 180 241-520 3-199 (208)
81 1xi4_A Clathrin heavy chain; a 99.8 9.8E-18 3.3E-22 175.9 36.3 367 89-534 987-1378(1630)
82 1qqe_A Vesicular transport pro 99.8 4.2E-20 1.5E-24 171.6 16.9 207 158-402 44-277 (292)
83 3q15_A PSP28, response regulat 99.8 8.3E-19 2.8E-23 169.7 25.5 242 153-507 103-366 (378)
84 2pzi_A Probable serine/threoni 99.8 1.4E-20 4.9E-25 195.3 13.6 188 145-380 388-583 (681)
85 2yhc_A BAMD, UPF0169 lipoprote 99.8 8.5E-19 2.9E-23 156.2 22.9 206 241-544 3-217 (225)
86 4ga2_A E3 SUMO-protein ligase 99.8 2.2E-20 7.4E-25 154.6 10.8 140 247-407 2-142 (150)
87 3as5_A MAMA; tetratricopeptide 99.8 1.2E-18 4.2E-23 149.9 22.1 138 241-399 7-144 (186)
88 3edt_B KLC 2, kinesin light ch 99.8 7.1E-20 2.4E-24 169.4 14.2 238 126-395 12-282 (283)
89 3as5_A MAMA; tetratricopeptide 99.8 4.3E-19 1.5E-23 152.8 17.9 161 219-400 19-179 (186)
90 4gco_A Protein STI-1; structur 99.8 3.6E-19 1.2E-23 142.1 15.8 122 233-375 4-125 (126)
91 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.2E-18 7.7E-23 153.4 22.0 211 150-400 3-219 (225)
92 1hz4_A MALT regulatory protein 99.8 4.8E-17 1.6E-21 157.1 31.7 298 134-509 31-352 (373)
93 3dss_A Geranylgeranyl transfer 99.8 3E-17 1E-21 151.2 27.5 160 225-405 47-233 (331)
94 3dss_A Geranylgeranyl transfer 99.8 3.6E-17 1.2E-21 150.6 25.9 243 133-406 46-316 (331)
95 4gco_A Protein STI-1; structur 99.8 2.5E-18 8.7E-23 137.2 15.2 120 267-407 4-123 (126)
96 2vsy_A XCC0866; transferase, g 99.8 4.6E-18 1.6E-22 173.8 19.9 165 221-406 2-169 (568)
97 3q7a_A Farnesyltransferase alp 99.8 8E-17 2.7E-21 148.8 25.7 162 225-407 71-250 (349)
98 1xi4_A Clathrin heavy chain; a 99.8 2.3E-16 7.7E-21 165.8 32.0 302 149-541 983-1310(1630)
99 2ifu_A Gamma-SNAP; membrane fu 99.8 9.8E-18 3.4E-22 156.9 19.9 168 163-399 3-189 (307)
100 2r5s_A Uncharacterized protein 99.8 3.8E-18 1.3E-22 145.5 14.7 152 220-393 18-172 (176)
101 3gyz_A Chaperone protein IPGC; 99.8 3.1E-18 1.1E-22 140.6 13.4 120 225-365 19-138 (151)
102 2r5s_A Uncharacterized protein 99.8 6.3E-18 2.1E-22 144.2 15.1 138 239-397 3-140 (176)
103 3qou_A Protein YBBN; thioredox 99.8 2.7E-17 9.2E-22 152.1 20.3 173 143-393 109-283 (287)
104 3gyz_A Chaperone protein IPGC; 99.8 1.1E-18 3.7E-23 143.3 9.7 118 261-399 21-138 (151)
105 1b89_A Protein (clathrin heavy 99.8 3.7E-19 1.3E-23 168.0 6.9 277 134-534 20-305 (449)
106 3qou_A Protein YBBN; thioredox 99.8 3.7E-17 1.3E-21 151.2 20.1 140 238-398 113-252 (287)
107 1b89_A Protein (clathrin heavy 99.8 9.8E-18 3.4E-22 158.3 15.1 267 122-471 32-308 (449)
108 3q7a_A Farnesyltransferase alp 99.8 2.8E-16 9.5E-21 145.2 24.0 247 134-404 71-342 (349)
109 2ifu_A Gamma-SNAP; membrane fu 99.7 3E-17 1E-21 153.6 17.8 160 220-402 48-231 (307)
110 2vgx_A Chaperone SYCD; alterna 99.7 1.7E-17 5.9E-22 136.5 11.6 118 229-367 8-125 (148)
111 1p5q_A FKBP52, FK506-binding p 99.7 4.4E-19 1.5E-23 167.9 2.1 203 220-542 77-296 (336)
112 2vsy_A XCC0866; transferase, g 99.7 8.4E-17 2.9E-21 164.4 19.0 165 255-518 2-169 (568)
113 1p5q_A FKBP52, FK506-binding p 99.7 1.8E-17 6E-22 156.8 10.9 154 220-394 125-294 (336)
114 2xcb_A PCRH, regulatory protei 99.7 9.7E-17 3.3E-21 131.4 12.2 123 229-372 5-127 (142)
115 3rjv_A Putative SEL1 repeat pr 99.7 1.7E-15 5.7E-20 133.2 21.0 152 225-401 3-164 (212)
116 2vgx_A Chaperone SYCD; alterna 99.7 1.1E-16 3.6E-21 131.8 12.3 120 262-402 7-126 (148)
117 2fo7_A Synthetic consensus TPR 99.7 1.1E-15 3.8E-20 123.6 18.4 134 243-397 2-135 (136)
118 3rjv_A Putative SEL1 repeat pr 99.7 8.6E-16 2.9E-20 135.0 18.3 160 135-321 4-173 (212)
119 2c2l_A CHIP, carboxy terminus 99.7 1E-16 3.4E-21 147.7 12.7 198 273-540 1-199 (281)
120 4f3v_A ESX-1 secretion system 99.7 9.9E-17 3.4E-21 143.3 11.9 199 221-519 19-249 (282)
121 4f3v_A ESX-1 secretion system 99.7 7.3E-17 2.5E-21 144.2 10.8 214 152-405 8-247 (282)
122 4e6h_A MRNA 3'-END-processing 99.7 5E-14 1.7E-18 143.5 32.6 383 135-542 50-535 (679)
123 1hh8_A P67PHOX, NCF-2, neutrop 99.7 3.9E-15 1.3E-19 131.2 20.2 145 242-410 6-166 (213)
124 4e6h_A MRNA 3'-END-processing 99.7 4.9E-14 1.7E-18 143.6 30.5 390 109-545 53-575 (679)
125 2xcb_A PCRH, regulatory protei 99.7 6.4E-16 2.2E-20 126.4 13.1 120 263-403 5-124 (142)
126 3upv_A Heat shock protein STI1 99.7 2.2E-15 7.6E-20 120.5 15.9 118 239-377 1-124 (126)
127 2e2e_A Formate-dependent nitri 99.7 1.2E-15 4.1E-20 130.2 13.6 130 218-368 20-152 (177)
128 1dce_A Protein (RAB geranylger 99.7 6.8E-15 2.3E-19 148.1 21.2 163 225-408 46-235 (567)
129 4gcn_A Protein STI-1; structur 99.6 1.6E-15 5.5E-20 121.1 13.0 110 240-363 6-115 (127)
130 2c2l_A CHIP, carboxy terminus 99.6 3.5E-16 1.2E-20 144.0 10.5 188 148-394 1-199 (281)
131 1dce_A Protein (RAB geranylger 99.6 1.1E-14 3.8E-19 146.5 21.6 191 254-529 40-244 (567)
132 2e2e_A Formate-dependent nitri 99.6 2.3E-15 7.8E-20 128.4 14.3 131 252-403 20-153 (177)
133 1a17_A Serine/threonine protei 99.6 9E-15 3.1E-19 123.1 17.4 133 241-394 12-146 (166)
134 2fbn_A 70 kDa peptidylprolyl i 99.6 8.7E-16 3E-20 133.7 10.9 153 220-393 16-185 (198)
135 2qfc_A PLCR protein; TPR, HTH, 99.6 2.6E-14 8.8E-19 132.7 20.6 181 274-543 73-269 (293)
136 2lni_A Stress-induced-phosphop 99.6 9.7E-15 3.3E-19 117.8 15.6 122 238-380 12-133 (133)
137 2vyi_A SGTA protein; chaperone 99.6 1E-14 3.5E-19 117.1 15.6 124 237-381 7-130 (131)
138 2fo7_A Synthetic consensus TPR 99.6 3.5E-14 1.2E-18 114.6 18.7 106 237-363 30-135 (136)
139 3sz7_A HSC70 cochaperone (SGT) 99.6 7.6E-15 2.6E-19 123.4 14.9 82 240-321 9-90 (164)
140 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 7.4E-16 2.5E-20 152.1 8.8 153 219-392 245-413 (457)
141 3upv_A Heat shock protein STI1 99.6 1.6E-14 5.4E-19 115.4 15.0 114 273-407 1-120 (126)
142 3sz7_A HSC70 cochaperone (SGT) 99.6 1.7E-14 5.7E-19 121.3 15.8 118 272-410 7-124 (164)
143 3mv2_B Coatomer subunit epsilo 99.6 1.8E-13 6.3E-18 123.8 23.4 152 227-396 85-242 (310)
144 1hh8_A P67PHOX, NCF-2, neutrop 99.6 6.3E-14 2.2E-18 123.4 18.0 140 219-394 17-172 (213)
145 2qfc_A PLCR protein; TPR, HTH, 99.6 5.2E-14 1.8E-18 130.6 18.0 177 146-360 70-266 (293)
146 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 4.2E-16 1.4E-20 153.9 3.8 164 221-407 199-393 (457)
147 3u3w_A Transcriptional activat 99.6 2.2E-14 7.6E-19 133.1 14.7 156 219-395 86-267 (293)
148 1na0_A Designed protein CTPR3; 99.6 1.4E-13 4.8E-18 109.3 17.2 121 238-379 4-125 (125)
149 1a17_A Serine/threonine protei 99.6 1.7E-13 5.8E-18 115.2 18.3 129 337-543 19-149 (166)
150 2hr2_A Hypothetical protein; a 99.6 2.3E-14 7.8E-19 115.6 11.9 103 279-402 14-139 (159)
151 1hxi_A PEX5, peroxisome target 99.6 3.3E-14 1.1E-18 112.3 12.6 103 243-366 18-120 (121)
152 2hr2_A Hypothetical protein; a 99.6 1.9E-14 6.6E-19 116.0 11.3 109 242-371 11-142 (159)
153 3q49_B STIP1 homology and U bo 99.6 4.9E-14 1.7E-18 114.4 13.9 117 238-375 5-126 (137)
154 4gcn_A Protein STI-1; structur 99.6 4.7E-14 1.6E-18 112.5 13.1 102 275-397 7-115 (127)
155 2fbn_A 70 kDa peptidylprolyl i 99.6 1.7E-14 5.8E-19 125.4 11.0 147 243-410 5-167 (198)
156 1hxi_A PEX5, peroxisome target 99.5 5.7E-14 2E-18 110.9 12.6 102 277-399 18-119 (121)
157 3gw4_A Uncharacterized protein 99.5 8E-14 2.8E-18 121.6 14.4 160 218-398 2-180 (203)
158 1elw_A TPR1-domain of HOP; HOP 99.5 2.9E-13 1E-17 106.3 16.2 113 242-375 4-116 (118)
159 3rkv_A Putative peptidylprolyl 99.5 4.6E-14 1.6E-18 118.3 12.1 114 241-375 10-142 (162)
160 3u3w_A Transcriptional activat 99.5 1.3E-13 4.5E-18 127.9 16.0 170 153-360 77-266 (293)
161 1wao_1 Serine/threonine protei 99.5 7.1E-14 2.4E-18 138.4 14.0 135 206-363 8-153 (477)
162 3mv2_B Coatomer subunit epsilo 99.5 6.6E-13 2.3E-17 120.2 18.8 240 219-543 24-285 (310)
163 2lni_A Stress-induced-phosphop 99.5 3.2E-13 1.1E-17 108.7 15.1 118 272-410 12-129 (133)
164 3q49_B STIP1 homology and U bo 99.5 4.5E-13 1.6E-17 108.6 16.0 107 270-397 3-109 (137)
165 2dba_A Smooth muscle cell asso 99.5 4E-13 1.4E-17 110.5 15.9 120 237-377 23-145 (148)
166 1zu2_A Mitochondrial import re 99.5 5.9E-14 2E-18 112.9 9.7 98 219-316 13-131 (158)
167 2if4_A ATFKBP42; FKBP-like, al 99.5 2E-14 6.9E-19 135.8 8.0 143 236-399 173-333 (338)
168 3rkv_A Putative peptidylprolyl 99.5 4.7E-13 1.6E-17 112.1 15.3 111 276-407 11-140 (162)
169 1wao_1 Serine/threonine protei 99.5 6.2E-15 2.1E-19 146.0 4.2 141 240-401 4-157 (477)
170 2kck_A TPR repeat; tetratricop 99.5 3.2E-13 1.1E-17 104.9 13.0 106 272-398 2-110 (112)
171 1elw_A TPR1-domain of HOP; HOP 99.5 1.3E-12 4.5E-17 102.5 16.6 112 275-407 3-114 (118)
172 2xev_A YBGF; tetratricopeptide 99.5 8.1E-13 2.8E-17 105.8 15.4 111 244-375 4-120 (129)
173 2vyi_A SGTA protein; chaperone 99.5 8.3E-13 2.8E-17 105.8 15.0 119 271-410 7-125 (131)
174 1na0_A Designed protein CTPR3; 99.5 2.8E-12 9.7E-17 101.7 17.6 116 272-408 4-120 (125)
175 2if4_A ATFKBP42; FKBP-like, al 99.5 8.3E-14 2.8E-18 131.6 10.0 163 144-366 172-334 (338)
176 1elr_A TPR2A-domain of HOP; HO 99.5 5.9E-13 2E-17 106.7 13.4 118 240-379 2-126 (131)
177 2dba_A Smooth muscle cell asso 99.5 1.3E-12 4.5E-17 107.3 15.3 117 270-407 22-141 (148)
178 2kck_A TPR repeat; tetratricop 99.5 3.1E-13 1.1E-17 105.0 10.8 106 238-364 2-110 (112)
179 1ihg_A Cyclophilin 40; ppiase 99.5 1.5E-12 5E-17 124.3 16.7 130 151-321 223-352 (370)
180 4b4t_Q 26S proteasome regulato 99.5 2.9E-12 1E-16 126.1 19.5 138 243-395 5-165 (434)
181 2xev_A YBGF; tetratricopeptide 99.4 3.2E-12 1.1E-16 102.3 15.7 108 277-405 3-116 (129)
182 3k9i_A BH0479 protein; putativ 99.4 2.9E-13 9.9E-18 106.3 9.1 94 221-314 3-99 (117)
183 3gw4_A Uncharacterized protein 99.4 4.6E-12 1.6E-16 110.3 17.7 124 252-396 2-138 (203)
184 1ihg_A Cyclophilin 40; ppiase 99.4 9E-13 3.1E-17 125.8 13.9 125 242-387 223-363 (370)
185 1zu2_A Mitochondrial import re 99.4 4.5E-13 1.5E-17 107.8 9.5 103 253-365 13-125 (158)
186 3k9i_A BH0479 protein; putativ 99.4 3.7E-13 1.3E-17 105.7 8.3 100 254-374 2-104 (117)
187 3ro3_A PINS homolog, G-protein 99.4 2.5E-12 8.5E-17 107.4 12.0 136 241-397 8-161 (164)
188 2uy1_A Cleavage stimulation fa 99.4 4.1E-10 1.4E-14 111.6 29.1 178 347-537 195-380 (493)
189 1elr_A TPR2A-domain of HOP; HO 99.4 8.3E-12 2.9E-16 99.9 13.8 111 275-407 3-120 (131)
190 4b4t_Q 26S proteasome regulato 99.4 2E-11 6.9E-16 120.1 19.3 225 92-360 9-245 (434)
191 3ro3_A PINS homolog, G-protein 99.4 5.4E-12 1.8E-16 105.3 12.5 141 151-308 9-161 (164)
192 2uy1_A Cleavage stimulation fa 99.3 8.3E-09 2.8E-13 102.2 32.3 332 109-542 16-415 (493)
193 2kat_A Uncharacterized protein 99.2 8.8E-11 3E-15 91.6 12.4 84 225-308 2-85 (115)
194 2kat_A Uncharacterized protein 99.2 1.1E-10 3.7E-15 91.1 11.3 84 259-363 2-85 (115)
195 2l6j_A TPR repeat-containing p 99.2 1.1E-11 3.8E-16 96.1 4.8 81 241-321 3-89 (111)
196 2l6j_A TPR repeat-containing p 99.2 1.9E-11 6.4E-16 94.8 5.5 95 275-390 3-103 (111)
197 1na3_A Designed protein CTPR2; 99.2 3.3E-10 1.1E-14 84.0 12.0 83 239-321 6-88 (91)
198 1na3_A Designed protein CTPR2; 99.1 5.6E-10 1.9E-14 82.7 11.4 85 274-379 7-91 (91)
199 3ma5_A Tetratricopeptide repea 99.1 5.5E-10 1.9E-14 84.4 10.9 72 237-308 2-73 (100)
200 1klx_A Cysteine rich protein B 99.1 3.6E-09 1.2E-13 85.2 15.2 125 221-372 8-136 (138)
201 3ma5_A Tetratricopeptide repea 99.0 1.2E-09 4.3E-14 82.4 9.9 70 272-362 3-72 (100)
202 2kc7_A BFR218_protein; tetratr 99.0 3.6E-10 1.2E-14 85.3 6.9 69 246-314 4-73 (99)
203 3u64_A Protein TP_0956; tetrat 99.0 9.4E-09 3.2E-13 90.5 14.8 108 236-363 146-272 (301)
204 1klx_A Cysteine rich protein B 99.0 1E-08 3.5E-13 82.5 13.9 116 256-396 9-128 (138)
205 3n71_A Histone lysine methyltr 99.0 2.3E-09 7.9E-14 105.2 11.6 128 247-395 314-465 (490)
206 2kc7_A BFR218_protein; tetratr 99.0 1E-09 3.4E-14 82.9 7.2 91 280-399 4-95 (99)
207 3ly7_A Transcriptional activat 98.9 3.3E-08 1.1E-12 91.1 16.9 144 235-400 187-345 (372)
208 1pc2_A Mitochondria fission pr 98.9 1.4E-08 4.8E-13 80.6 11.5 103 218-320 8-115 (152)
209 3n71_A Histone lysine methyltr 98.9 6E-09 2E-13 102.3 11.0 137 155-306 313-465 (490)
210 3ly7_A Transcriptional activat 98.8 5.5E-08 1.9E-12 89.6 15.0 125 220-366 211-345 (372)
211 3bee_A Putative YFRE protein; 98.8 2.9E-08 1E-12 73.0 10.1 73 238-310 2-77 (93)
212 3u64_A Protein TP_0956; tetrat 98.8 1E-07 3.5E-12 84.0 14.5 113 270-398 146-273 (301)
213 3bee_A Putative YFRE protein; 98.6 3E-07 1E-11 67.5 10.8 76 306-399 2-77 (93)
214 1pc2_A Mitochondria fission pr 98.6 4.6E-07 1.6E-11 71.9 11.7 94 291-405 13-111 (152)
215 2v5f_A Prolyl 4-hydroxylase su 98.6 4.3E-07 1.5E-11 68.7 10.9 77 241-317 4-87 (104)
216 3qww_A SET and MYND domain-con 98.6 2.6E-07 9E-12 89.1 11.2 94 220-313 310-424 (433)
217 3qwp_A SET and MYND domain-con 98.4 3.7E-07 1.3E-11 88.2 7.9 95 219-313 298-413 (429)
218 3qwp_A SET and MYND domain-con 98.4 1E-06 3.5E-11 85.2 10.5 108 249-377 294-425 (429)
219 2v5f_A Prolyl 4-hydroxylase su 98.4 4.1E-06 1.4E-10 63.2 11.5 77 275-372 4-87 (104)
220 3qww_A SET and MYND domain-con 98.4 2.3E-06 8E-11 82.5 11.8 94 253-367 309-423 (433)
221 4g26_A Pentatricopeptide repea 98.3 0.0002 6.7E-09 70.8 24.7 188 153-375 28-220 (501)
222 1nzn_A CGI-135 protein, fissio 98.3 8.1E-06 2.8E-10 62.2 11.1 97 222-318 15-116 (126)
223 4g26_A Pentatricopeptide repea 98.3 0.00018 6E-09 71.2 22.7 155 219-394 37-204 (501)
224 4h7y_A Dual specificity protei 98.1 4.2E-05 1.4E-09 59.4 12.0 114 145-274 7-126 (161)
225 1nzn_A CGI-135 protein, fissio 98.0 9.1E-05 3.1E-09 56.4 11.4 98 290-405 15-114 (126)
226 4h7y_A Dual specificity protei 97.8 0.0004 1.4E-08 54.0 12.6 125 271-411 8-139 (161)
227 1y8m_A FIS1; mitochondria, unk 97.7 0.0011 3.9E-08 51.2 12.9 99 219-318 17-119 (144)
228 3o48_A Mitochondria fission 1 97.7 0.00095 3.2E-08 51.0 11.9 99 219-318 18-120 (134)
229 3ffl_A Anaphase-promoting comp 97.6 0.0002 6.7E-09 57.2 7.3 102 218-320 30-165 (167)
230 3ffl_A Anaphase-promoting comp 97.6 0.00062 2.1E-08 54.3 10.0 116 243-391 21-148 (167)
231 3o48_A Mitochondria fission 1 97.3 0.0014 4.9E-08 50.0 8.4 66 220-285 55-121 (134)
232 3txn_A 26S proteasome regulato 97.2 0.023 7.9E-07 53.4 18.1 196 151-380 19-235 (394)
233 1y8m_A FIS1; mitochondria, unk 96.9 0.03 1E-06 43.4 13.0 64 222-285 56-120 (144)
234 3txn_A 26S proteasome regulato 96.7 0.1 3.4E-06 49.1 17.2 175 366-543 20-213 (394)
235 4gns_B Protein CSD3, chitin bi 96.5 0.04 1.4E-06 56.4 14.1 54 484-537 344-397 (754)
236 1qsa_A Protein (soluble lytic 96.4 0.85 2.9E-05 45.9 23.3 51 489-539 297-347 (618)
237 4gns_B Protein CSD3, chitin bi 96.4 0.028 9.7E-07 57.5 12.7 123 254-391 260-397 (754)
238 4b4t_P 26S proteasome regulato 96.3 0.3 1E-05 47.2 18.6 193 344-542 29-249 (445)
239 3mkq_A Coatomer beta'-subunit; 96.3 0.85 2.9E-05 48.0 23.9 100 251-392 608-708 (814)
240 1zbp_A Hypothetical protein VP 96.1 0.13 4.6E-06 44.7 13.5 59 342-400 8-66 (273)
241 3kae_A CDC27, possible protein 96.1 0.38 1.3E-05 38.2 17.7 112 242-400 33-149 (242)
242 3mkq_A Coatomer beta'-subunit; 96.0 0.11 3.8E-06 54.8 15.4 45 253-302 663-707 (814)
243 1qsa_A Protein (soluble lytic 96.0 1.6 5.4E-05 43.9 23.0 123 249-393 221-347 (618)
244 3mkq_B Coatomer subunit alpha; 95.9 0.38 1.3E-05 39.1 14.5 53 242-302 8-60 (177)
245 1zbp_A Hypothetical protein VP 95.7 0.32 1.1E-05 42.4 14.1 61 252-312 7-67 (273)
246 3mkq_B Coatomer subunit alpha; 95.6 0.1 3.5E-06 42.4 10.1 73 218-303 15-87 (177)
247 3kae_A CDC27, possible protein 95.6 0.65 2.2E-05 36.9 16.0 96 220-362 45-145 (242)
248 2ff4_A Probable regulatory pro 95.3 0.51 1.7E-05 44.7 15.5 62 243-304 172-233 (388)
249 1ya0_A SMG-7 transcript varian 95.3 0.1 3.5E-06 50.8 10.7 79 244-322 154-232 (497)
250 4fhn_B Nucleoporin NUP120; pro 95.0 1.6 5.4E-05 48.0 20.4 53 247-303 817-869 (1139)
251 4b4t_P 26S proteasome regulato 94.9 2.9 9.8E-05 40.3 21.9 200 219-473 27-246 (445)
252 4b4t_R RPN7, 26S proteasome re 94.6 0.27 9.3E-06 47.3 11.6 125 221-362 110-239 (429)
253 2ff4_A Probable regulatory pro 94.5 0.78 2.7E-05 43.3 14.4 87 252-359 125-233 (388)
254 4b4t_S RPN3, 26S proteasome re 93.9 0.68 2.3E-05 44.8 12.4 126 251-399 145-304 (523)
255 1ya0_A SMG-7 transcript varian 93.6 0.53 1.8E-05 45.8 11.3 79 278-377 154-232 (497)
256 4b4t_R RPN7, 26S proteasome re 92.7 0.87 3E-05 43.7 11.5 104 273-397 128-240 (429)
257 3spa_A Mtrpol, DNA-directed RN 92.7 1.6 5.6E-05 46.1 13.7 100 241-361 126-231 (1134)
258 3spa_A Mtrpol, DNA-directed RN 92.5 0.94 3.2E-05 47.8 11.7 96 446-541 128-231 (1134)
259 4fhn_B Nucleoporin NUP120; pro 90.8 3.7 0.00013 45.1 15.0 70 237-306 837-929 (1139)
260 4b4t_S RPN3, 26S proteasome re 90.1 1.1 3.8E-05 43.3 8.9 119 147-310 177-304 (523)
261 4ady_A RPN2, 26S proteasome re 89.2 24 0.00083 37.1 23.4 137 151-303 413-551 (963)
262 2wpv_A GET4, UPF0363 protein Y 83.9 24 0.00082 31.7 20.1 66 239-304 131-216 (312)
263 3lpz_A GET4 (YOR164C homolog); 78.9 38 0.0013 30.7 25.4 148 348-525 119-296 (336)
264 1wy6_A Hypothetical protein ST 77.7 11 0.00037 29.0 7.4 55 486-540 100-154 (172)
265 2v6y_A AAA family ATPase, P60 76.3 5.4 0.00018 27.7 5.2 22 484-505 18-39 (83)
266 4gq2_M Nucleoporin NUP120; bet 76.2 19 0.00066 38.4 11.9 53 247-303 815-867 (950)
267 3ax2_A Mitochondrial import re 74.4 7.3 0.00025 26.1 5.1 30 155-184 21-50 (73)
268 2wpv_A GET4, UPF0363 protein Y 74.1 50 0.0017 29.7 18.7 27 274-300 132-158 (312)
269 1wy6_A Hypothetical protein ST 70.9 21 0.0007 27.5 7.4 54 343-396 103-156 (172)
270 3lpz_A GET4 (YOR164C homolog); 70.7 62 0.0021 29.3 25.0 26 274-299 134-159 (336)
271 4aez_C MAD3, mitotic spindle c 70.2 29 0.001 29.2 9.1 48 260-307 132-181 (223)
272 2wvi_A Mitotic checkpoint seri 69.5 37 0.0013 27.0 9.2 65 238-308 62-128 (164)
273 2w2u_A Hypothetical P60 katani 68.9 5.5 0.00019 27.6 3.8 15 167-181 16-30 (83)
274 2crb_A Nuclear receptor bindin 68.4 9.3 0.00032 26.7 4.6 23 482-504 20-42 (97)
275 3ax2_A Mitochondrial import re 68.0 14 0.00046 24.8 5.3 33 246-278 21-53 (73)
276 1om2_A Protein (mitochondrial 67.7 12 0.00041 26.5 5.3 30 155-184 24-53 (95)
277 2v6y_A AAA family ATPase, P60 67.3 6.1 0.00021 27.4 3.8 15 167-181 8-22 (83)
278 4ady_A RPN2, 26S proteasome re 64.8 1.5E+02 0.005 31.4 16.3 146 135-304 429-588 (963)
279 4gq2_M Nucleoporin NUP120; bet 64.3 40 0.0014 36.1 11.1 105 139-277 828-933 (950)
280 2crb_A Nuclear receptor bindin 64.0 14 0.00046 25.9 4.8 30 151-180 15-44 (97)
281 2w2u_A Hypothetical P60 katani 62.9 14 0.00046 25.6 4.8 23 482-504 24-46 (83)
282 3t5v_B Nuclear mRNA export pro 62.8 26 0.00088 33.5 8.4 90 220-309 138-254 (455)
283 3t5x_A PCI domain-containing p 62.1 18 0.00061 30.2 6.4 35 242-276 14-48 (203)
284 2ijq_A Hypothetical protein; s 60.9 46 0.0016 26.4 8.1 60 483-542 38-106 (161)
285 3re2_A Predicted protein; meni 60.4 42 0.0014 30.5 8.5 65 241-305 254-325 (472)
286 1om2_A Protein (mitochondrial 60.1 12 0.0004 26.6 4.0 29 515-543 24-52 (95)
287 2rpa_A Katanin P60 ATPase-cont 57.0 13 0.00044 25.3 3.7 26 480-505 15-40 (78)
288 4a5x_A MITD1, MIT domain-conta 56.9 20 0.00067 25.0 4.8 26 480-505 19-44 (86)
289 3t5v_B Nuclear mRNA export pro 56.2 46 0.0016 31.8 8.8 99 166-275 141-254 (455)
290 3esl_A Checkpoint serine/threo 56.0 86 0.0029 25.9 10.7 73 237-310 75-149 (202)
291 2ijq_A Hypothetical protein; s 55.9 71 0.0024 25.3 8.4 61 245-305 35-104 (161)
292 3t5x_A PCI domain-containing p 55.8 31 0.0011 28.7 6.8 38 276-313 14-51 (203)
293 2dl1_A Spartin; SPG20, MIT, st 52.6 11 0.00036 27.9 2.9 16 489-504 34-49 (116)
294 3u84_A Menin; MLL, JUND, ledgf 52.1 67 0.0023 29.8 8.5 65 241-305 276-347 (550)
295 1wfd_A Hypothetical protein 15 51.9 25 0.00086 24.9 4.8 25 481-505 19-43 (93)
296 2v6x_A Vacuolar protein sortin 51.5 26 0.00089 24.2 4.8 24 482-505 18-41 (85)
297 2cpt_A SKD1 protein, vacuolar 49.9 16 0.00055 27.2 3.7 14 167-180 15-28 (117)
298 4a1g_A Mitotic checkpoint seri 49.5 93 0.0032 24.4 12.9 47 261-307 84-132 (152)
299 3esl_A Checkpoint serine/threo 49.1 1.1E+02 0.0038 25.2 10.2 47 493-539 95-143 (202)
300 2cpt_A SKD1 protein, vacuolar 48.6 26 0.00091 26.0 4.7 26 480-505 21-46 (117)
301 2rpa_A Katanin P60 ATPase-cont 48.4 24 0.00083 23.9 4.0 27 154-180 15-41 (78)
302 2cwy_A Hypothetical protein TT 46.9 72 0.0025 22.5 6.6 57 484-542 8-70 (94)
303 2wvi_A Mitotic checkpoint seri 46.0 1.1E+02 0.0038 24.3 9.0 48 227-274 79-128 (164)
304 3lvg_A Clathrin heavy chain 1; 45.1 0.043 1.5E-06 52.1 -13.3 186 149-377 81-275 (624)
305 2ynq_A ESSB; membrane protein, 42.4 1.2E+02 0.0042 23.8 7.8 81 452-535 15-97 (161)
306 4gq4_A Menin; tumor suppressor 39.1 2.5E+02 0.0084 26.3 10.6 77 241-317 261-350 (489)
307 2br9_A 14-3-3E, 14-3-3 protein 37.5 1.9E+02 0.0065 24.6 11.3 32 243-274 6-37 (234)
308 2dl1_A Spartin; SPG20, MIT, st 36.5 38 0.0013 25.0 3.7 17 165-181 17-33 (116)
309 3re2_A Predicted protein; meni 35.3 1E+02 0.0035 28.1 6.9 32 510-541 295-326 (472)
310 2v6x_A Vacuolar protein sortin 34.6 67 0.0023 22.1 4.8 28 154-181 16-43 (85)
311 3uzd_A 14-3-3 protein gamma; s 33.3 2.3E+02 0.0079 24.3 12.9 149 245-393 7-202 (248)
312 2cwy_A Hypothetical protein TT 32.6 1.3E+02 0.0045 21.2 6.8 28 281-308 6-33 (94)
313 3u84_A Menin; MLL, JUND, ledgf 31.2 1.2E+02 0.0043 28.1 6.9 32 510-541 317-348 (550)
314 1wfd_A Hypothetical protein 15 27.9 1.6E+02 0.0054 20.7 7.7 39 448-511 18-56 (93)
315 2vkj_A TM1634; membrane protei 27.9 1.5E+02 0.0052 20.5 6.2 32 149-180 51-82 (106)
316 2cfu_A SDSA1; SDS-hydrolase, l 27.4 85 0.0029 31.8 6.0 48 243-290 450-497 (658)
317 3bu8_A Telomeric repeat-bindin 26.8 2.7E+02 0.0092 23.3 7.5 71 221-291 85-163 (235)
318 3myv_A SUSD superfamily protei 26.7 1.5E+02 0.0052 28.2 7.4 30 511-540 190-219 (454)
319 2p58_C Putative type III secre 26.4 1.8E+02 0.0062 20.9 6.6 69 449-537 27-95 (116)
320 2br9_A 14-3-3E, 14-3-3 protein 25.9 3E+02 0.01 23.3 15.4 47 493-539 146-201 (234)
321 2uwj_G Type III export protein 25.8 1.8E+02 0.006 20.9 5.4 69 449-537 26-94 (115)
322 2cfu_A SDSA1; SDS-hydrolase, l 25.2 1E+02 0.0035 31.2 6.1 50 480-529 452-501 (658)
323 3kez_A Putative sugar binding 24.3 1.7E+02 0.0057 28.0 7.2 30 511-540 196-225 (461)
324 3dza_A Uncharacterized putativ 23.7 3E+02 0.01 22.4 9.0 62 243-304 109-178 (191)
325 3bqo_A Telomeric repeat-bindin 22.7 77 0.0026 26.0 3.6 44 248-291 123-166 (211)
326 3lew_A SUSD-like carbohydrate 22.3 2E+02 0.0068 27.8 7.3 30 511-540 203-232 (495)
327 3lxu_X Tripeptidyl-peptidase 2 21.2 8.7E+02 0.03 26.9 16.1 59 262-321 1269-1328(1354)
328 3mcx_A SUSD superfamily protei 21.2 1.8E+02 0.0063 27.9 6.9 30 511-540 202-231 (477)
329 3mkr_B Coatomer subunit alpha; 21.1 4.5E+02 0.015 23.5 10.0 28 155-182 106-133 (320)
330 3iqu_A 14-3-3 protein sigma; s 20.8 3.9E+02 0.013 22.7 18.4 47 493-539 149-204 (236)
331 1bpo_A Protein (clathrin); cla 20.7 4.5E+02 0.016 25.1 8.8 16 162-177 352-367 (494)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.1e-40 Score=321.32 Aligned_cols=357 Identities=20% Similarity=0.198 Sum_probs=212.3
Q ss_pred hhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChh
Q 009045 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPL 168 (546)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 168 (546)
+..+++.|+...++ ..+.+++...|++...+...|.+ +..++...++.+++.+|.++.+++.+|.++...|+++
T Consensus 6 a~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAE-RHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 44555666666655 55666666666655555444433 3355555666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHH
Q 009045 169 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 248 (546)
Q Consensus 169 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 248 (546)
+|+..|+++++++|+. ...+..++.++...|+. ++|+..|+++++.+|++..++..+
T Consensus 85 ~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~g~~-----------~~A~~~~~~al~~~p~~~~~~~~l 141 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDF------------IDGYINLAAALVAAGDM-----------EGAVQAYVSALQYNPDLYCVRSDL 141 (388)
T ss_dssp HHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHHSCS-----------SHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHHHcCcch------------HHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHhCCCcHHHHHHH
Confidence 6666666666654432 12233444443333333 666666666666666666666666
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccc
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 328 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 328 (546)
|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++.
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~------- 214 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK------- 214 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-------
Confidence 6666666666666666666666666666666666666666666666666666666666666666666555555
Q ss_pred cccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009045 329 AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 408 (546)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 408 (546)
..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.
T Consensus 215 --------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------- 272 (388)
T 1w3b_A 215 --------------EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD-------- 272 (388)
T ss_dssp --------------TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH--------
T ss_pred --------------HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--------
Confidence 5566666666666666666666666666666666666666666666666666665544
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHH
Q 009045 409 RIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAF 486 (546)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~ 486 (546)
+|..+|.++...|++++|+..+.+.+. +....++..+|.+
T Consensus 273 --------------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 273 --------------------------------------AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp --------------------------------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 455555555556666666666655333 3344555556666
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 487 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 487 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
+...|++++|+..|+++++.+|++..+++.+|.+|...|++++|+.+|++++++.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666666666666666666666666666666666666666666666665543
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.7e-37 Score=302.73 Aligned_cols=344 Identities=18% Similarity=0.189 Sum_probs=313.2
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
.-+..+.+.|+...+. ..+..++...|.....+..+|.+ +..+|.+.|++++..+|++..++..+|.++...|+
T Consensus 38 ~l~~~~~~~~~~~~a~-~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 38 LLSSIHFQCRRLDRSA-HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC
Confidence 3566677788888776 88899999999998888887776 66889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHH
Q 009045 167 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 246 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 246 (546)
+++|+..|+++++.+|+. ...+..++.++ ...|++++|+..|+++++.+|++..++.
T Consensus 117 ~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~-----------~~~g~~~~A~~~~~~al~~~p~~~~~~~ 173 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNPDL------------YCVRSDLGNLL-----------KALGRLEEAKACYLKAIETQPNFAVAWS 173 (388)
T ss_dssp SSHHHHHHHHHHHHCTTC------------THHHHHHHHHH-----------HTTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc------------HHHHHHHHHHH-----------HHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999997654 13344555554 3456669999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCc
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 326 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 326 (546)
.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++.
T Consensus 174 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~----- 248 (388)
T 1w3b_A 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY----- 248 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 327 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++.
T Consensus 249 ----------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------- 305 (388)
T 1w3b_A 249 ----------------EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA------- 305 (388)
T ss_dssp ----------------HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH-------
T ss_pred ----------------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH-------
Confidence 899999999999999999999999999999999999999999999999999998764
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHH
Q 009045 407 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGES 484 (546)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la 484 (546)
.++..++.++...|++++|+..+.+.+. +....+++.+|
T Consensus 306 ---------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 346 (388)
T 1w3b_A 306 ---------------------------------------DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp ---------------------------------------HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3566778889999999999999999766 55667899999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 485 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
.++...|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999999988874
No 3
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-35 Score=294.89 Aligned_cols=373 Identities=13% Similarity=0.093 Sum_probs=318.3
Q ss_pred hhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009045 91 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLG 165 (546)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 165 (546)
...|..+++.|++..++ ..|.+++...|+ ...+..+|.+ +..+|...|+++++.+|++..+++.+|.++...|
T Consensus 10 ~~~g~~~~~~g~~~~A~-~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAI-KYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHTSCHHHHH-HHHHHHHHHCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHHhcCcc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 45688899999999998 999999999994 5566666655 6689999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcccchhccchhhHHH-------------------------------------------------
Q 009045 166 QPLKAVSSYEKAEEILLRCEADIARPELLSL------------------------------------------------- 196 (546)
Q Consensus 166 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~------------------------------------------------- 196 (546)
++++|+..|++++...|.+..... .....
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIE--PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTH--HHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 999999999999998764321110 00000
Q ss_pred --------------------HHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHh-----c---------CcccH
Q 009045 197 --------------------VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ-----S---------DTRQA 242 (546)
Q Consensus 197 --------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~-----~---------~p~~~ 242 (546)
...+...+..+. .+...|++++|+..|+++++ . +|.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNL--------YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH--------SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH--------HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 011111111110 01247999999999999999 5 36678
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
.+++.+|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..|++++..+|.+..++..++.++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~- 315 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF- 315 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH-
Confidence 89999999999999999999999999999999 9999999999999999999999999999999999999999988887
Q ss_pred hhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
..|++++|+..|+++++..|.+..++..+|.++...|++++|+..|+++++..|++.
T Consensus 316 --------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 372 (514)
T 2gw1_A 316 --------------------ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP--- 372 (514)
T ss_dssp --------------------HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS---
T ss_pred --------------------HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH---
Confidence 899999999999999999999999999999999999999999999999999988764
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhh----
Q 009045 403 YAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC---- 478 (546)
Q Consensus 403 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~---- 478 (546)
.++..+|.++...|++++|+..+.+.+...+..
T Consensus 373 -------------------------------------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 373 -------------------------------------------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp -------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred -------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 356677888888999999999998866533332
Q ss_pred ----HHhhHHHHHHH---hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 479 ----AGAGESAFLDQ---ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 479 ----~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.+|...|++++|+.+|++++++.+.
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 78899999999 999999999999999999999999999999999999999999999999988764
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-34 Score=294.47 Aligned_cols=350 Identities=15% Similarity=0.154 Sum_probs=297.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHh------------------------hcccc
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH------------------------AQCLL 206 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~------------------------~~~~~ 206 (546)
..+|+.+|.+|.+.|++++|+..|+++++.+|..... +..++..+. ....+
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA-----FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH-----HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 8889999999999999999999999999987654211 110100000 00011
Q ss_pred ccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHH
Q 009045 207 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 286 (546)
Q Consensus 207 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 286 (546)
+..++.. +...|++++|+..|+++++. |.+..++..+|.++...|++++|+..|++++..+|++..++..++.++
T Consensus 275 ~~~~~~~----~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 275 YMLKLNK----TSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349 (597)
T ss_dssp HHTTSCT----TTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred HHHHHHH----HcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHH
Confidence 2223444 77899999999999999988 788999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 287 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
...|++++|+..++++++..|++...+..++.++. +.|++++|+..|+++++.+|.+..
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~ 408 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL---------------------CVNKISEARRYFSKSSTMDPQFGP 408 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999988887 899999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHH
Q 009045 367 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 446 (546)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (546)
+|..+|.+|...|++++|+..|+++++..|++...+..++...... ..+..+...+...+.. .+.++.
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~----~~~~~~ 476 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL--------GNILLANEYLQSSYAL----FQYDPL 476 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHH----CCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh----CCCChH
Confidence 9999999999999999999999999999999998888877655432 1222333333333332 456788
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhccc--------hh-hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009045 447 AWAGFAAVQKTHHEVAAAFETEENELSK--------ME-ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANL 517 (546)
Q Consensus 447 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 517 (546)
+|..++.++...|++++|+..+.+.+.. .. ...+..+|.++...|++++|+..|+++++.+|+++.+|..+
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999999999986543 21 46788999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 518 ANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 518 g~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
|.+|...|++++|+.+|++++++.+.
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998765
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.8e-34 Score=292.64 Aligned_cols=379 Identities=14% Similarity=0.106 Sum_probs=310.4
Q ss_pred hhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009045 91 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLG 165 (546)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 165 (546)
...|..+++.|+...++ ..|.+++...|++...+..+|.+ +..+|.+.|++++..+|+++.+++.+|.++...|
T Consensus 29 ~~~g~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAI-KYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHHHTTCCC-CH-HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Confidence 44688889999999988 99999999999998888887776 6789999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcccchhccch------------------------------hhHHHHH-----------------
Q 009045 166 QPLKAVSSYEKAEEILLRCEADIARP------------------------------ELLSLVQ----------------- 198 (546)
Q Consensus 166 ~~~~A~~~~~~al~~~p~~~~~~~~~------------------------------~~~~~~~----------------- 198 (546)
++++|+..|+ ++...|+........ .......
T Consensus 108 ~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 108 NFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp CHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred CHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 9999999995 776666532211000 0000000
Q ss_pred ---------HHhhcccccccc-CCCccccccChhhHHHHHHHHHHHHhcCcccHH-------HHHHHHHHHHHcCChHHH
Q 009045 199 ---------IHHAQCLLPESS-GDNSLDKELEPEELEEILSKLKESMQSDTRQAV-------VWNTLGLILLKSGRLQSS 261 (546)
Q Consensus 199 ---------~~~~~~~~~~~~-g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A 261 (546)
....++..+... +.. ....|++++|+..|+++++.+|++.. ++..+|.++...|++++|
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~----~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGY----LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHH----HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 000000000000 000 11235899999999999999999855 578889999999999999
Q ss_pred HHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHH
Q 009045 262 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 341 (546)
Q Consensus 262 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (546)
+..|++++..+|+ ..++..+|.++...|++++|+..|+++++.+|++..++..+|.++.
T Consensus 263 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------- 321 (537)
T 3fp2_A 263 QVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-------------------- 321 (537)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH--------------------
Confidence 9999999999999 9999999999999999999999999999999999999999998887
Q ss_pred HhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchh
Q 009045 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 421 (546)
Q Consensus 342 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~ 421 (546)
..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++.
T Consensus 322 -~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------------- 378 (537)
T 3fp2_A 322 -ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP---------------------- 378 (537)
T ss_dssp -HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----------------------
T ss_pred -hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----------------------
Confidence 899999999999999999999999999999999999999999999999999998764
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchh--hhH------HhhHHHHHHHh---
Q 009045 422 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--ECA------GAGESAFLDQA--- 490 (546)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~~------~~~la~~~~~~--- 490 (546)
.++..+|.++...|++++|+..+.+.+...+ ... ++.+|.++...
T Consensus 379 ------------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 379 ------------------------EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp ------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred ------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 3566778888999999999999998665332 222 44567888888
Q ss_pred -------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 491 -------SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 491 -------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
|++++|+.+|+++++.+|+++.++..+|.+|...|++++|+.+|++++++.++
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999998764
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=7e-34 Score=283.02 Aligned_cols=331 Identities=15% Similarity=0.085 Sum_probs=281.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCc
Q 009045 135 REEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 214 (546)
Q Consensus 135 ~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (546)
.....+.+++..+|.++.+++.+|.++...|++++|+..|+++++.+|.+ ..++..++.++..
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~l~~~~~~----- 72 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN------------YIAYYRRATVFLA----- 72 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHH-----
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc------------HHHHHHHHHHHHH-----
Confidence 34456777889999999999999999999999999999999999986653 3445566666544
Q ss_pred cccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHH---------
Q 009045 215 LDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNL--------- 282 (546)
Q Consensus 215 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l--------- 282 (546)
.|++++|+..|+++++.+|++..++..+|.+|...|++++|+..|++++..+|++. .++..+
T Consensus 73 ------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 146 (450)
T 2y4t_A 73 ------MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL 146 (450)
T ss_dssp ------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH
Confidence 45569999999999999999999999999999999999999999999999999988 776655
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 283 ---GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 283 ---a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
|.++...|++++|+..|++++...|.+..++..++.++. ..|++++|+..|+++++
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~ 205 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI---------------------KEGEPRKAISDLKAASK 205 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHH
Confidence 666999999999999999999999999999999998887 89999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCC
Q 009045 360 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP 439 (546)
Q Consensus 360 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (546)
.+|.++.++..+|.+|...|++++|+..|++++..+|++...+..+.....
T Consensus 206 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------------- 256 (450)
T 2y4t_A 206 LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK----------------------------- 256 (450)
T ss_dssp HHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----------------------------
Confidence 999999999999999999999999999999999999998876655433110
Q ss_pred CCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chh----hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 009045 440 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KME----ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI 513 (546)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 513 (546)
...+..+|.++...|++++|+..+.+.+. +.. ...+..+|.++.+.|++++|+..++++++.+|+++.+
T Consensus 257 -----~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 331 (450)
T 2y4t_A 257 -----LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNA 331 (450)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence 12456678899999999999999998665 332 2367889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 514 WANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
|..+|.++...|++++|+.+|++++++.+.
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999987654
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=2.4e-33 Score=270.08 Aligned_cols=316 Identities=14% Similarity=0.085 Sum_probs=281.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+++.++.+|.++...|++++|+..|+++++.+|.+ ..++..+|.++. ..|++++|+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~~a~~~~-----------~~~~~~~A~~ 58 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN------------YIAYYRRATVFL-----------AMGKSKAALP 58 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH-----------HHTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------------HHHHHHHHHHHH-----------HccCHHHHHH
Confidence 56889999999999999999999999999997654 234555665553 4556699999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC---CChHHHHHH------------HHHHHHcCCHHH
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP---NNCDCIGNL------------GIAYFQSGDMEQ 294 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~ 294 (546)
.|+++++.+|++..++..+|.++...|++++|+..|+++++.+| ++..++..+ |.++...|++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 59 DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 99999999999999999999999999999999999999999999 888888877 799999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 374 (546)
|+..|+++++..|.+..++..+|.++. ..|++++|+..++++++..|.++.++..+|.+
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 197 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFI---------------------KEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999998888 89999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
+...|++++|+..|+++++..|++...+..+.... .......+|.+
T Consensus 198 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~a~~ 243 (359)
T 3ieg_A 198 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK----------------------------------KLNKLIESAEE 243 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------------------HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH----------------------------------HHHHHHHHHHH
Confidence 99999999999999999999999987654433211 11346677899
Q ss_pred HHhcccHHHHHHHHHhhcc--chhh----hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChH
Q 009045 455 QKTHHEVAAAFETEENELS--KMEE----CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 528 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~--~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 528 (546)
+...|++++|+..+.+.+. +... ..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+++
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998665 3322 346679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 009045 529 SSGKCLEKVLMVYCS 543 (546)
Q Consensus 529 ~A~~~~~~al~~~~~ 543 (546)
+|+.+|++++++.+.
T Consensus 324 ~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 324 EAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999998764
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.2e-33 Score=281.27 Aligned_cols=324 Identities=14% Similarity=0.122 Sum_probs=287.1
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|...|++++..+|.++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++.
T Consensus 43 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~----- 105 (450)
T 2y4t_A 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF------------TAARLQRGHLLL----- 105 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------------HHHHHHHHHHHH-----
Confidence 788889999999999999999999999999999999999999999997653 244555666654
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccH---HHHHHH------------HHHHHHcCChHHHHHHHHhhHhcCCCChHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQA---VVWNTL------------GLILLKSGRLQSSISVLSSLLAVDPNNCDC 278 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 278 (546)
..|++++|+..|+++++.+|.+. .++..+ |.++...|++++|+..|++++...|.+..+
T Consensus 106 ------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 106 ------KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp ------HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ------HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 44556999999999999999988 766555 677999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 279 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 279 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
+..+|.+|...|++++|+..|+++++.+|.+..++..++.++. ..|++++|+..|++++
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY---------------------QLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888 8999999999999999
Q ss_pred hcCCCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHH
Q 009045 359 KADPKAAHIWANL------------ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWA 426 (546)
Q Consensus 359 ~~~p~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 426 (546)
..+|++...+..+ |.++...|++++|+..|++++...|+++...
T Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~------------------------ 294 (450)
T 2y4t_A 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT------------------------ 294 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH------------------------
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH------------------------
Confidence 9999999888766 9999999999999999999999999865322
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc--cchhhhHHhhHHHHHHHhccHHHHHHHHHHHH
Q 009045 427 GNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKECLLAAL 504 (546)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 504 (546)
...+..+|.++...|++++|+..+.+.+ .+....+++.+|.++...|++++|+..|++++
T Consensus 295 ------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 295 ------------------VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp ------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1357888999999999999999999966 46667899999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHH------------HHhcC-----ChHHHHHHHHH-HHHHhcc
Q 009045 505 KADPKAAHIWANLANA------------YYLTG-----DHRSSGKCLEK-VLMVYCS 543 (546)
Q Consensus 505 ~~~p~~~~~~~~lg~~------------~~~~g-----~~~~A~~~~~~-al~~~~~ 543 (546)
+++|+++.++..++.+ |..+| +.+++.+.|++ +++..|+
T Consensus 357 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999955 55555 66777888887 6665544
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=8.2e-32 Score=259.37 Aligned_cols=307 Identities=14% Similarity=0.109 Sum_probs=275.8
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|...|++++..+|.++.+++.+|.++...|++++|+..|+++++..|.. ..++..+|.++
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~------ 81 (359)
T 3ieg_A 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF------------TAARLQRGHLL------ 81 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------------chHHHHHHHHH------
Confidence 788889999999999999999999999999999999999999999996653 13445555554
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCc---ccHHHHHHH------------HHHHHHcCChHHHHHHHHhhHhcCCCChHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDT---RQAVVWNTL------------GLILLKSGRLQSSISVLSSLLAVDPNNCDC 278 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 278 (546)
...|++++|+..|+++++.+| ++..++..+ |.++...|++++|+..|++++..+|.++.+
T Consensus 82 -----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 82 -----LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp -----HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -----HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 445666999999999999999 888888877 799999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 279 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 279 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
+..+|.++...|++++|+..++++++..|.+..++..+|.++. ..|++++|+..|++++
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY---------------------QLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888 8999999999999999
Q ss_pred hcCCCCHHHHH------------HHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHH
Q 009045 359 KADPKAAHIWA------------NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWA 426 (546)
Q Consensus 359 ~~~p~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 426 (546)
+..|++..++. .+|.++...|++++|+..|++++...|++...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------------------ 271 (359)
T 3ieg_A 216 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT------------------------ 271 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH------------------------
T ss_pred hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH------------------------
Confidence 99999888654 448889999999999999999999999875332
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHH
Q 009045 427 GNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAAL 504 (546)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 504 (546)
..++..+|.++...|++++|+..+.+.+. +....+++.+|.++...|++++|+..|++++
T Consensus 272 ------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 272 ------------------VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 13477889999999999999999999655 6667889999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhcCC
Q 009045 505 KADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 505 ~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
+++|++..++..++.++...++
T Consensus 334 ~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 334 EHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp TTCTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999876543
No 10
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=274.67 Aligned_cols=364 Identities=15% Similarity=0.072 Sum_probs=267.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 149 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
..+..+..||.++..+|++++|+++|++|+++.+........+.. +..+.++|.+|..+|+ +++|+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~---~~~~~nla~~y~~~g~-----------~~~A~ 114 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRS---LVTWGNYAWVYYHMGR-----------LSDVQ 114 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTT---HHHHHHHHHHHHHTTC-----------HHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHH---HHHHHHHHHHHHHcCC-----------hHHHH
Confidence 346788899999999999999999999999986654322222322 3556777777765555 59999
Q ss_pred HHHHHHHhcC--------cccHHHHHHHHHHHHHc--CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH---cCCHHHH
Q 009045 229 SKLKESMQSD--------TRQAVVWNTLGLILLKS--GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ---SGDMEQS 295 (546)
Q Consensus 229 ~~~~~al~~~--------p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A 295 (546)
.+|++++++. +..+.++..+|.++... ++|++|+.+|+++++++|+++.++..+|.++.. .++.++|
T Consensus 115 ~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHH
Confidence 9999998863 34577888888877765 579999999999999999999999999988654 5778899
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 375 (546)
++.|+++++++|++..++..++..+... +...+++++|+.++++++..+|.+..++..+|.+|
T Consensus 195 l~~~~~al~l~p~~~~~~~~l~~~~~~~-----------------~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~ 257 (472)
T 4g1t_A 195 IDPLRQAIRLNPDNQYLKVLLALKLHKM-----------------REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY 257 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHC-----------------C------CHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHH-----------------HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 9999999999999999999888776532 22678899999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhcc-------CchhHHHHHHHHHHHHHhcCCCCCCCcHHHH
Q 009045 376 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ-------EPTEQLSWAGNEMASILREGDPVQIEPPIAW 448 (546)
Q Consensus 376 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (546)
...|++++|+..|+++++.+|++..++..++........... ................+.......|....++
T Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 337 (472)
T 4g1t_A 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC 337 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCH
T ss_pred HHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhh
Confidence 999999999999999999999999999988875433211100 0011111111222222222233345667789
Q ss_pred HHHHHHHHhcccHHHHHHHHHhhccc--hhh---hHHhhHHHH-HHHhccHHHHHHHHHHHHHh----------------
Q 009045 449 AGFAAVQKTHHEVAAAFETEENELSK--MEE---CAGAGESAF-LDQASAVNVAKECLLAALKA---------------- 506 (546)
Q Consensus 449 ~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~---~~~~~la~~-~~~~g~~~~A~~~~~~al~~---------------- 506 (546)
..+|.++...|++++|+..|.+++.. .+. ..++.+|.+ +...|++++|+.+|++++++
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~ 417 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQK 417 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 99999999999999999999997652 222 235566654 45789999999999988876
Q ss_pred --------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 507 --------DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 507 --------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+|+++.+|..||.+|...|++++|+++|++|+++-+.
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4666789999999999999999999999999997643
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-32 Score=282.46 Aligned_cols=401 Identities=12% Similarity=0.053 Sum_probs=325.3
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
..+..+.+.|+...++ ..|.+++...|+. ..+...|.. +..+|...|++++.. |.++.+++.+|.+|.+.|+
T Consensus 89 ~~~~~~~~~g~~~~A~-~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 165 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAA-FVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYD 165 (597)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCchHHH-HHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhh
Confidence 3455677788888887 8889998888854 333333333 447788888887654 7789999999999999999
Q ss_pred hhHHHHHHHHHHHHhcccchhc-------cchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCc
Q 009045 167 PLKAVSSYEKAEEILLRCEADI-------ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT 239 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p 239 (546)
+++|+..|++.. |...... ...........+..++.++. +.|++++|+..|+++++.+|
T Consensus 166 ~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 166 WQGALNLLGETN---PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT-----------NLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHCSSC---TTC----------CCCSSCCHHHHHHHHHHHHHH-----------HTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhccC---CccccccccccccccccccchhHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHHhCc
Confidence 999999999632 2210000 00000112345666666654 45556999999999999999
Q ss_pred ccHHHHHHHHH--------------------------------------HHHHcCChHHHHHHHHhhHhcCCCChHHHHH
Q 009045 240 RQAVVWNTLGL--------------------------------------ILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 281 (546)
Q Consensus 240 ~~~~~~~~l~~--------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 281 (546)
.+..++..++. .|.+.|++++|+..|+++++. |.+..++..
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~ 310 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLC 310 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHH
Confidence 99888777654 344678999999999999988 788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC
Q 009045 282 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361 (546)
Q Consensus 282 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 361 (546)
+|.+|...|++++|+..|+++++.+|.+..++..++.++. ..|++++|+..++++++..
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH---------------------ESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999998888887 8999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCC
Q 009045 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ 441 (546)
Q Consensus 362 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (546)
|.+..++..+|.+|...|++++|+..|+++++.+|.+...+..++...... ..+..+...+...+.. .
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~----~ 437 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE--------GEHDQAISAYTTAARL----F 437 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHT----T
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh----C
Confidence 999999999999999999999999999999999999999888887654432 1222333333333332 4
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHh------CCCC-HH
Q 009045 442 IEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKA------DPKA-AH 512 (546)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~ 512 (546)
+.+..+|..++.++...|++++|+..+.+.+. +.+...+..+|.++.+.|++++|+..|+++++. +|++ ..
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 55778999999999999999999999999654 566788999999999999999999999999998 6665 78
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 513 IWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+|..+|.+|...|++++|+..|++++++.+.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988653
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-31 Score=252.99 Aligned_cols=307 Identities=10% Similarity=0.032 Sum_probs=264.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccC
Q 009045 141 VHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE 220 (546)
Q Consensus 141 ~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 220 (546)
...+...|.++..+..+|..+...|++++|+..|+++++.+|.+. . .+..++.+ +..
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~------~~~~~~~~-----------~~~ 68 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA------S------CLPVHIGT-----------LVE 68 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------T------THHHHHHH-----------HHH
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh------h------hHHHHHHH-----------HHH
Confidence 345667788999999999999999999999999999999977642 1 11122222 235
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
.|++++|+..++++++.+|.++.+++.+|.++...| ++++|+.+|++++..+|++..++..+|.++...|++++|+..|
T Consensus 69 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 567799999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009045 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 379 (546)
Q Consensus 300 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 379 (546)
+++++..|++...+..+|.++. ..|++++|+..|+++++.+|.++.++..+|.++...|
T Consensus 149 ~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 149 FTAAQLMKGCHLPMLYIGLEYG---------------------LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207 (330)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccccHHHHHHHHHHHH---------------------HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 9999999999999998888887 8999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcc
Q 009045 380 DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH 459 (546)
Q Consensus 380 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (546)
++++|+..|++++...+.... ....+..+.++..+|.++...|
T Consensus 208 ~~~~A~~~~~~a~~~~~~~~~-------------------------------------~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 208 EWKTAEKWFLDALEKIKAIGN-------------------------------------EVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp CHHHHHHHHHHHHHHHTTTSC-------------------------------------SCTTTTCCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhhhccc-------------------------------------cccccHHHHHHHHHHHHHHHhc
Confidence 999999999999998764321 0111334568999999999999
Q ss_pred cHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCChH
Q 009045 460 EVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAY-YLTGDHR 528 (546)
Q Consensus 460 ~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~ 528 (546)
++++|+..+.+.+. +....+++.+|.++...|++++|+.+|+++++++|+++.++..+|.++ ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999654 666788999999999999999999999999999999999999999999 5666643
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-31 Score=265.86 Aligned_cols=336 Identities=13% Similarity=0.027 Sum_probs=283.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
.+.+++.+|.++...|++++|+..|+++++.+|+ ..++..+|.++ +..|++++|+.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------~~~~~~la~~~-----------~~~g~~~~A~~ 60 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKED-------------PVFYSNLSACY-----------VSVGDLKKVVE 60 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-------------HHHHHHHHHHH-----------HHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-------------HHHHHhHHHHH-----------HHHhhHHHHHH
Confidence 4678999999999999999999999999998652 23455555554 44566699999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC----------------------------------
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------------------------- 275 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------------- 275 (546)
.|+++++.+|++..+++.+|.++...|++++|+..|++++..+|.+
T Consensus 61 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 140 (514)
T 2gw1_A 61 MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATP 140 (514)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998887632
Q ss_pred ---------------------------------------------hHHHHHHHHHHHH---cCCHHHHHHHHHHHHh---
Q 009045 276 ---------------------------------------------CDCIGNLGIAYFQ---SGDMEQSAKCFQDLIL--- 304 (546)
Q Consensus 276 ---------------------------------------------~~~~~~la~~~~~---~g~~~~A~~~~~~al~--- 304 (546)
..++..+|.++.. .|++++|+..|+++++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 220 (514)
T 2gw1_A 141 TELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220 (514)
T ss_dssp ----------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred hhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhh
Confidence 6677888888876 8999999999999999
Q ss_pred --h--CCCC-------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 305 --K--DQNH-------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 305 --~--~p~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
+ +|++ ..++..+|.++. ..|++++|+..|+++++.+|. ..++..+|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~ 278 (514)
T 2gw1_A 221 EQLDKNNEDEKLKEKLAISLEHTGIFKF---------------------LKNDPLGAHEDIKKAIELFPR-VNSYIYMAL 278 (514)
T ss_dssp HHTTTSTTCHHHHHHHHHHHHHHHHHHH---------------------HSSCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred hhhccCccccccChHHHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhhCcc-HHHHHHHHH
Confidence 6 5554 444555555554 999999999999999999999 999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
++...|++++|+..|++++..+|.+...+..++....... .+..+...+...+.. .+..+.++..+|.
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~----~~~~~~~~~~l~~ 346 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ--------NYDQAGKDFDKAKEL----DPENIFPYIQLAC 346 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT--------CTTHHHHHHHHHHHT----CSSCSHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHh----ChhhHHHHHHHHH
Confidence 9999999999999999999999999998888877655421 122333333333332 4556789999999
Q ss_pred HHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHh--
Q 009045 454 VQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAH------IWANLANAYYL-- 523 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~-- 523 (546)
++...|++++|+..+.+.+. +....+++.+|.++...|++++|+.+|+++++..|++.. +++.+|.++..
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 426 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP 426 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999655 556688999999999999999999999999999998855 99999999999
Q ss_pred -cCChHHHHHHHHHHHHHhcc
Q 009045 524 -TGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 524 -~g~~~~A~~~~~~al~~~~~ 543 (546)
.|++++|+.+|++++++.+.
T Consensus 427 ~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 427 TVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999987653
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.98 E-value=3e-31 Score=256.62 Aligned_cols=282 Identities=17% Similarity=0.173 Sum_probs=166.6
Q ss_pred HHHHHHHhCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCc
Q 009045 139 GLVHVARKMPKN----AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 214 (546)
Q Consensus 139 ~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (546)
.|.+++...|.+ ...++.+|.++...|++++|+..|+++++.+|.. ..++..+|.++.
T Consensus 48 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~------ 109 (368)
T 1fch_A 48 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH------------MEAWQYLGTTQA------ 109 (368)
T ss_dssp HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------------HHHHHHHHHHHH------
T ss_pred hhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHH------
Confidence 444444444433 2345555555555555555555555555553322 122233333322
Q ss_pred cccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHH--------------
Q 009045 215 LDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIG-------------- 280 (546)
Q Consensus 215 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-------------- 280 (546)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...|.+...+.
T Consensus 110 -----~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 110 -----ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp -----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred -----HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence 2233355555555555555555555555555555555555555555555555555444433
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 281 --NLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 281 --~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
.++.++ ..|++++|+..|+++++.+|. +..++..+|.++. ..|++++|+..|++
T Consensus 185 ~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 185 KRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN---------------------LSGEYDKAVDCFTA 242 (368)
T ss_dssp -CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHH
T ss_pred HHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH---------------------HcCCHHHHHHHHHH
Confidence 233333 555555555555555555555 4444444444444 45555555555555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhc
Q 009045 357 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 436 (546)
Q Consensus 357 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (546)
++..+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------- 284 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-------------------------------------- 284 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------------------
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------------------------------------
Confidence 555555555555555555555555555555555555555443
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC------
Q 009045 437 GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA------ 510 (546)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 510 (546)
..+++.+|.++...|++++|+.+|++++++.|++
T Consensus 285 ----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 285 ----------------------------------------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred ----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 3445566668889999999999999999999888
Q ss_pred -----HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 511 -----AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 511 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
..+|..+|.++..+|++++|..+++++++.+..
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT 362 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence 899999999999999999999999999988753
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=9.8e-30 Score=241.89 Aligned_cols=258 Identities=14% Similarity=0.067 Sum_probs=240.8
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC-CHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG-DMEQSAK 297 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~ 297 (546)
+..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.++...| ++++|+.
T Consensus 33 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 112 (330)
T 3hym_B 33 YYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARR 112 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 455778999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
+|+++++.+|.+..++..+|.++. ..|++++|+..|+++++..|.+...+..+|.++..
T Consensus 113 ~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 113 YLSKATTLEKTYGPAWIAYGHSFA---------------------VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHTTCTTCTHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 999999999999999999998887 89999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 457 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (546)
.|++++|+..|+++++..|++. .++..+|.++..
T Consensus 172 ~~~~~~A~~~~~~al~~~~~~~----------------------------------------------~~~~~l~~~~~~ 205 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPEDP----------------------------------------------FVMHEVGVVAFQ 205 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCH----------------------------------------------HHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCCCCh----------------------------------------------HHHHHHHHHHHH
Confidence 9999999999999999998754 457778888999
Q ss_pred cccHHHHHHHHHhhcc-----------chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 458 HHEVAAAFETEENELS-----------KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 458 ~~~~~~A~~~~~~~l~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
.|++++|+..+.+.+. +....+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+
T Consensus 206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 285 (330)
T 3hym_B 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence 9999999999998665 33346889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcc
Q 009045 527 HRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 527 ~~~A~~~~~~al~~~~~ 543 (546)
+++|+.+|++++++.+.
T Consensus 286 ~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 286 FENAVDYFHTALGLRRD 302 (330)
T ss_dssp HHHHHHHHHTTTTTCSC
T ss_pred HHHHHHHHHHHHccCCC
Confidence 99999999999987754
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=1.7e-29 Score=257.30 Aligned_cols=195 Identities=13% Similarity=0.031 Sum_probs=175.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 289 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 289 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
.|++++|+..|+++++.+|++...+..++.++.. +|.++...|++++|+..|+++++.+|+ ..++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~--------------~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 279 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCY--------------TGIFHFLKNNLLDAQVLLQESINLHPT-PNSY 279 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHH--------------HHHHHHhcccHHHHHHHHHHHHhcCCC-chHH
Confidence 3589999999999999999999888877776653 577888999999999999999999999 9999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHH
Q 009045 369 ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAW 448 (546)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (546)
..+|.++...|++++|+..|++++..+|++. .+|
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------------------------------------~~~ 313 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLNPEYP----------------------------------------------PTY 313 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH----------------------------------------------HHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCH----------------------------------------------HHH
Confidence 9999999999999999999999999998754 457
Q ss_pred HHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 449 AGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 449 ~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
..+|.++...|++++|+..+.+.+. +....+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 7788889999999999999999654 56668899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhccc
Q 009045 527 HRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 527 ~~~A~~~~~~al~~~~~~ 544 (546)
+++|+.+|++++++.+..
T Consensus 394 ~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCcc
Confidence 999999999999987643
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=1.9e-30 Score=250.68 Aligned_cols=271 Identities=16% Similarity=0.149 Sum_probs=226.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+...++.+|.++...|++++|+..|+++++.+|++ ..++..+|.++.. .|++++|+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~-----------~g~~~~A~~ 120 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD------------AEAWQFLGITQAE-----------NENEQAAIV 120 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHH-----------TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC------------HHHHHHHHHHHHH-----------CCCHHHHHH
Confidence 44569999999999999999999999999997654 2445566666544 455599999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHH----------HHHHHHcCCHHHHHHHH
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL----------GIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~ 299 (546)
.|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+ |.++...|++++|+..|
T Consensus 121 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999988876666555 89999999999999999
Q ss_pred HHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 300 QDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 300 ~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
+++++.+|. +..++..+|.++. ..|++++|+.+|+++++.+|+++.+|..+|.++..
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFH---------------------LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcCccCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999 8888888888887 88999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 457 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (546)
.|++++|+..|+++++++|++..++.
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~~~~~~------------------------------------------------------ 285 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGFIRSRY------------------------------------------------------ 285 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHH------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHH------------------------------------------------------
Confidence 99999999999999999887654333
Q ss_pred cccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHhcC
Q 009045 458 HHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK------------AAHIWANLANAYYLTG 525 (546)
Q Consensus 458 ~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g 525 (546)
.+|.++...|++++|+.+|++++++.|+ +..+|..++.++...|
T Consensus 286 ------------------------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 286 ------------------------NLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp ------------------------HHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred ------------------------HHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 3344777888999999999999998877 3678999999999999
Q ss_pred ChHHHHHHHHHHHHHhc
Q 009045 526 DHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 526 ~~~~A~~~~~~al~~~~ 542 (546)
+.+.|..+.++.++.+.
T Consensus 342 ~~~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 342 QPELFQAANLGDLDVLL 358 (365)
T ss_dssp CHHHHHHHHTTCCGGGT
T ss_pred cHHHHHHHHHhhHHHHH
Confidence 99999999888777664
No 18
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=4.8e-30 Score=245.57 Aligned_cols=260 Identities=12% Similarity=0.081 Sum_probs=215.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChh
Q 009045 143 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 222 (546)
Q Consensus 143 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 222 (546)
++..+|++..++..+|.++...|++++|+..|+++++++|++ ..+|..+|.++..+|+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~------------~~a~~~~g~~l~~~g~---------- 146 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN------------YTVWHFRRVLLKSLQK---------- 146 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHTTC----------
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC------------HHHHHHHHHHHHHccc----------
Confidence 456788999999999999999999999999999999997654 3556667776655543
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
++++|+..|+++++++|++..+|+.+|.++..+|++++|+.+|++++.++|++..+|+++|.++..+|++++|+.+|+++
T Consensus 147 d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 15999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHh-hcCHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ-ASAVNVA-----KECLLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
++++|++..+|.++|.++. . .|.+++| +.+|++++.++|++..+|..+|.++.
T Consensus 227 l~l~P~~~~a~~~lg~~l~---------------------~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~ 285 (382)
T 2h6f_A 227 LKEDVRNNSVWNQRYFVIS---------------------NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285 (382)
T ss_dssp HHHCTTCHHHHHHHHHHHH---------------------HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHH---------------------HhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999999998888887 4 4444666 58899999999999999999999988
Q ss_pred HcC--ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 377 LTG--DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 377 ~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
..| ++++|+..++++ +.+|++..++..++ .
T Consensus 286 ~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La----------------------------------------------~- 317 (382)
T 2h6f_A 286 DRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLV----------------------------------------------D- 317 (382)
T ss_dssp TTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHH----------------------------------------------H-
T ss_pred ccCccchHHHHHHHHHh-ccCCCCHHHHHHHH----------------------------------------------H-
Confidence 888 688888888887 77777654433332 2
Q ss_pred HHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHh--------cc-HHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHhc
Q 009045 455 QKTHHEVAAAFETEENELSKMEECAGAGESAFLDQA--------SA-VNVAKECLLAA-LKADPKAAHIWANLANAYYLT 524 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~--------g~-~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~ 524 (546)
+|... ++ +++|+.+|+++ ++++|.....|..++..+...
T Consensus 318 -------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 318 -------------------------------IYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp -------------------------------HHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 33333 22 58999999999 999999999999999988653
No 19
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.6e-29 Score=250.59 Aligned_cols=343 Identities=11% Similarity=0.027 Sum_probs=246.1
Q ss_pred hHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcc
Q 009045 134 SREEKGLVHVARK---------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQC 204 (546)
Q Consensus 134 ~~a~~~~~~~l~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 204 (546)
.+|.+.|++++++ +|....++.++|.+|..+|++++|+.+|++++++.+...... .+ ....++...|
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~-~~---~~~~~~~~~g 143 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY-RI---ESPELDCEEG 143 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS-CC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc-ch---hhHHHHHHHH
Confidence 6777777777765 678889999999999999999999999999999876532111 11 1123344444
Q ss_pred ccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH---cCChHHHHHHHHhhHhcCCCChHHHHH
Q 009045 205 LLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK---SGRLQSSISVLSSLLAVDPNNCDCIGN 281 (546)
Q Consensus 205 ~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~ 281 (546)
.++.. +..+++++|+.+|+++++++|+++.++..+|.++.. .+++++|++.|+++++++|++..++..
T Consensus 144 ~~~~~---------~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 144 WTRLK---------CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp HHHHH---------HCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHH---------HccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 43322 234678999999999999999999999999988654 578899999999999999999999999
Q ss_pred HHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHH
Q 009045 282 LGIAYFQS----GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 357 (546)
Q Consensus 282 la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 357 (546)
+|..+... |++++|+.+|++++..+|.+..++..+|.++. ..|++++|+..|+++
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~---------------------~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR---------------------RKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH---------------------HcCchHHHHHHHHHH
Confidence 99877654 67889999999999999999999999999888 899999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccC
Q 009045 358 LKADPKAAHIWANLANAYYLT-------------------GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQE 418 (546)
Q Consensus 358 l~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~ 418 (546)
++.+|+++.++..+|.+|... +.+++|+..|++++..+|.+...+..++......
T Consensus 274 l~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~------ 347 (472)
T 4g1t_A 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA------ 347 (472)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT------
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh------
Confidence 999999999999999998653 3468899999999999999999998887755432
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HHhcccHHHHHHHHHhhcc------------------------
Q 009045 419 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV-QKTHHEVAAAFETEENELS------------------------ 473 (546)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~l~------------------------ 473 (546)
..+..+...+.+.+..... ......++..+|.+ ....|++++|+..|.+++.
T Consensus 348 --~~~~~A~~~~~kaL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 348 --DQYEEAEYYFQKEFSKELT-PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLS 424 (472)
T ss_dssp --TCHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence 2233344444444443211 11112345566654 4577899999998887542
Q ss_pred --chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009045 474 --KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLAN 519 (546)
Q Consensus 474 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 519 (546)
|....+++.+|.+|...|++++|+++|++++++.|.++.++.++|.
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 3445678999999999999999999999999999999999988874
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=7.6e-29 Score=235.38 Aligned_cols=272 Identities=11% Similarity=0.113 Sum_probs=225.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+...++.+|.++...|++++|+..|+++++.+|+. ..++..++.++. ..|++++|+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~-----------~~~~~~~A~~ 76 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER------------EEAWRSLGLTQA-----------ENEKDGLAII 76 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH-----------HTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHH-----------HcCCHHHHHH
Confidence 45668899999999999999999999999986543 233444555443 4455699999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHH--------------HH-HHHHcCCHHH
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL--------------GI-AYFQSGDMEQ 294 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~ 294 (546)
.|+++++.+|.+..++..+|.++...|++++|+..|++++..+|.+...+..+ +. ++...|++++
T Consensus 77 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 77 ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHH
T ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH
Confidence 99999999998888999999999999999999999999999888888877776 66 6788888899
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 374 (546)
|+..++++++..|.+..++..+|.++. ..|++++|+..++++++.+|++..++..+|.+
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYN---------------------LSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999999988888888888888777 78889999999999999888888889999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
+...|++++|+..|+++++..|++...+
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------------------------------------------------- 243 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYVRVM---------------------------------------------------- 243 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHH----------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHH----------------------------------------------------
Confidence 9999999999999999888888764333
Q ss_pred HHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHH
Q 009045 455 QKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK------------AAHIWANLANAYY 522 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~ 522 (546)
+.+|.++...|++++|+..|+++++..|+ +..+|..+|.++.
T Consensus 244 --------------------------~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 244 --------------------------YNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp --------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 33444788899999999999999999999 7999999999999
Q ss_pred hcCChHHHHHHHHHHHHHhcc
Q 009045 523 LTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 523 ~~g~~~~A~~~~~~al~~~~~ 543 (546)
..|++++|..+++++++.++.
T Consensus 298 ~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 298 VMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HTTCHHHHHHHTTCCSHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhcch
Confidence 999999999999999988764
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=1.2e-28 Score=238.27 Aligned_cols=260 Identities=17% Similarity=0.146 Sum_probs=228.1
Q ss_pred cChhhHHHHHH-HHHHHHhcCcccH----HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 219 LEPEELEEILS-KLKESMQSDTRQA----VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 219 ~~~~~~~~A~~-~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
...|++++|+. .|++++...|.++ ..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34567799999 9999999888764 568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHH----
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA---- 369 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---- 369 (546)
+|+..|+++++++|++..++..+|.++. ..|++++|+..|++++...|.+...+.
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 174 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFT---------------------NESLQRQACEILRDWLRYTPAYAHLVTPAEE 174 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 9999999999999999999999998887 899999999999999999998776664
Q ss_pred ------------HHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcC
Q 009045 370 ------------NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREG 437 (546)
Q Consensus 370 ------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (546)
.++.++ ..|++++|+..|+++++.+|+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~-------------------------------------- 215 (368)
T 1fch_A 175 GAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI-------------------------------------- 215 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC--------------------------------------
T ss_pred HhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc--------------------------------------
Confidence 466666 99999999999999999998732
Q ss_pred CCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Q 009045 438 DPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWA 515 (546)
Q Consensus 438 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 515 (546)
.+.++..+|.++...|++++|+..+.+.+. +....+++.+|.++...|++++|+..|+++++++|+++.+++
T Consensus 216 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 289 (368)
T 1fch_A 216 ------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 289 (368)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 124677888999999999999999999654 566688999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 516 NLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 516 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
.+|.+|...|++++|+.+|++++++.+..
T Consensus 290 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 290 NLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999988654
No 22
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=5.9e-28 Score=214.23 Aligned_cols=212 Identities=16% Similarity=0.177 Sum_probs=173.5
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
++...+.. .+......|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++ ++
T Consensus 82 ~~~~~~~~----------~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~ 150 (217)
T 2pl2_A 82 AYVALYRQ----------AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT 150 (217)
T ss_dssp HHHHHHHT----------CSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHhhhh----------hhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc
Confidence 98821000 00011122999999999999999999999999999999999999999999999999998 66
Q ss_pred hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhh
Q 009045 399 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 478 (546)
Q Consensus 399 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 478 (546)
+.+++
T Consensus 151 ~~~~~--------------------------------------------------------------------------- 155 (217)
T 2pl2_A 151 PEIRS--------------------------------------------------------------------------- 155 (217)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred hHHHH---------------------------------------------------------------------------
Confidence 54433
Q ss_pred HHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 479 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+.+|+++-.
T Consensus 156 ---~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ---ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp ---HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 3344788899999999999999999999999999999999999999999999998753
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=2.1e-28 Score=234.15 Aligned_cols=241 Identities=11% Similarity=0.015 Sum_probs=214.1
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHH
Q 009045 234 SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-MEQSAKCFQDLILKDQNHPAA 312 (546)
Q Consensus 234 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 312 (546)
++..+|++..++..+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|++++.++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4678899999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
|+++|.++. ..|++++|+.+|+++++++|++..+|.++|.++..+|++++|+.+|++++
T Consensus 169 ~~~~g~~~~---------------------~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 169 WHHRRVLVE---------------------WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp HHHHHHHHH---------------------HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999988 88999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh-cccHHHH-----HH
Q 009045 393 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT-HHEVAAA-----FE 466 (546)
Q Consensus 393 ~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A-----~~ 466 (546)
+++|++..+|+.++ .++.. .|..++| +.
T Consensus 228 ~l~P~~~~a~~~lg----------------------------------------------~~l~~l~~~~~eA~~~~el~ 261 (382)
T 2h6f_A 228 KEDVRNNSVWNQRY----------------------------------------------FVISNTTGYNDRAVLEREVQ 261 (382)
T ss_dssp HHCTTCHHHHHHHH----------------------------------------------HHHHHTTCSCSHHHHHHHHH
T ss_pred HhCCCCHHHHHHHH----------------------------------------------HHHHHhcCcchHHHHHHHHH
Confidence 99999876555544 44444 3333444 46
Q ss_pred HHHhh--ccchhhhHHhhHHHHHHHhc--cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------C-hHHHHHH
Q 009045 467 TEENE--LSKMEECAGAGESAFLDQAS--AVNVAKECLLAALKADPKAAHIWANLANAYYLTG--------D-HRSSGKC 533 (546)
Q Consensus 467 ~~~~~--l~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~-~~~A~~~ 533 (546)
.+.++ +++....+|+++|.++...| ++++|+..++++ +.+|++..++..+|.+|..+| + +++|+.+
T Consensus 262 ~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~ 340 (382)
T 2h6f_A 262 YTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 340 (382)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 66664 45777788999999999888 699999999998 999999999999999999885 3 5899999
Q ss_pred HHHH-HHHhc
Q 009045 534 LEKV-LMVYC 542 (546)
Q Consensus 534 ~~~a-l~~~~ 542 (546)
|+++ +++-+
T Consensus 341 ~~~l~~~~DP 350 (382)
T 2h6f_A 341 CEILAKEKDT 350 (382)
T ss_dssp HHHHHHTTCG
T ss_pred HHHHHHHhCc
Confidence 9998 66543
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=8.4e-28 Score=232.12 Aligned_cols=251 Identities=18% Similarity=0.120 Sum_probs=216.3
Q ss_pred HHHHHHHHhcCccc----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 228 LSKLKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 228 ~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
...+.+.+...+.+ ...++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555544444 34599999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH----------HH
Q 009045 304 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL----------AN 373 (546)
Q Consensus 304 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----------~~ 373 (546)
+++|++..++..+|.++. ..|++++|+..|++++++.|++...+..+ |.
T Consensus 127 ~~~p~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYT---------------------NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred hcCCCCHHHHHHHHHHHH---------------------ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence 999999999999999888 89999999999999999999876665554 99
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
++...|++++|+.+|+++++.+|+.. .+.++..+|.
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~--------------------------------------------~~~~~~~l~~ 221 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMI--------------------------------------------DPDLQTGLGV 221 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSC--------------------------------------------CHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCcc--------------------------------------------CHHHHHHHHH
Confidence 99999999999999999999999731 2346778888
Q ss_pred HHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHH
Q 009045 454 VQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 531 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 531 (546)
++...|++++|+..+.+.+. +....+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|++++|+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999655 6667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 009045 532 KCLEKVLMVYCS 543 (546)
Q Consensus 532 ~~~~~al~~~~~ 543 (546)
.+|++++++.+.
T Consensus 302 ~~~~~al~~~~~ 313 (365)
T 4eqf_A 302 SNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhCcc
Confidence 999999998865
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=1.7e-24 Score=217.34 Aligned_cols=349 Identities=14% Similarity=0.047 Sum_probs=286.4
Q ss_pred CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccc
Q 009045 132 SSSREEKGLVHVARKMPKNAHAHFLLGLMYQR----LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207 (546)
Q Consensus 132 ~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (546)
+..+|...|+++++. .++.+++.||.+|.. .+++++|+.+|+++.+.. . ..++..+|.+|
T Consensus 58 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------~------~~a~~~Lg~~y 121 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--------L------PQAQQNLGVMY 121 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------C------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------C------HHHHHHHHHHH
Confidence 348899999999876 689999999999999 999999999999998752 1 13334455444
Q ss_pred cccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCChHHHHHHHHhhHhcCCCChHHHHHHH
Q 009045 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLG 283 (546)
Q Consensus 208 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 283 (546)
..- . -..+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|
T Consensus 122 ~~g-~------g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg 190 (490)
T 2xm6_A 122 HEG-N------GVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLG 190 (490)
T ss_dssp HHT-S------SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HcC-C------CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 321 0 0146789999999999875 578999999999998 89999999999999986 5799999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 284 IAYFQ----SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 284 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
.+|.. .+++++|+.+|+++++. .++.++..++.++....+ ..+++++|+.+|+++++
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g-----------------~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIG-----------------VTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC-----------------CCCCHHHHHHHHHHHHH
Confidence 99998 89999999999999875 568888899988872110 27899999999999987
Q ss_pred cCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHh
Q 009045 360 ADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILR 435 (546)
Q Consensus 360 ~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (546)
. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.++......... .......+...+.....
T Consensus 252 ~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g---~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 252 Q--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEG---VAKNREQAISWYTKSAE 324 (490)
T ss_dssp T--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTT---BCCCHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC---CcCCHHHHHHHHHHHHh
Confidence 5 568899999999999 99999999999999876 5677777777655443111 11223334444444444
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhcc---cHHHHHHHHHhhccchhhhHHhhHHHHHHH----hccHHHHHHHHHHHHHhCC
Q 009045 436 EGDPVQIEPPIAWAGFAAVQKTHH---EVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADP 508 (546)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 508 (546)
. .++.++..+|.++...| ++++|+..|.++....+..+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 325 ~------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-- 396 (490)
T 2xm6_A 325 Q------GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-- 396 (490)
T ss_dssp T------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred c------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--
Confidence 3 35688999999998866 899999999999888889999999999999 89999999999999986
Q ss_pred CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHh
Q 009045 509 KAAHIWANLANAYYL----TGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 509 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 541 (546)
.++.++++||.+|.. .+++++|+.+|+++++..
T Consensus 397 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 397 GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 469999999999998 899999999999999886
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=2.7e-27 Score=209.92 Aligned_cols=201 Identities=17% Similarity=0.166 Sum_probs=171.6
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHH
Q 009045 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 227 (546)
Q Consensus 148 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 227 (546)
|.++.+++.+|.++...|++++|+..|+++++.+|++ ..++..+|.++.. .|++++|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------~~a~~~lg~~~~~-----------~g~~~~A 58 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD------------PEALYWLARTQLK-----------LGLVNPA 58 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC------------HHHHHHHHHHHHH-----------TTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHH-----------cCCHHHH
Confidence 7889999999999999999999999999999997765 3455666666544 4556999
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHc-----------CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 228 LSKLKESMQSDTRQAVVWNTLGLILLKS-----------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 228 ~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
+..|+++++.+|+++.+++.+|.++... |++++|+..|+++++++|+++.++..+|.++..+|++++|+
T Consensus 59 ~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 59 LENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
..|+++++++ +++.++..+|.++. ..|++++|+..|+++++++|+++.++..+|.++.
T Consensus 139 ~~~~~al~~~-~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 139 ASLKQALALE-DTPEIRSALAELYL---------------------SMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHHHC-CCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhcc-cchHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999 99999999999888 8999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHh
Q 009045 377 LTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~ 393 (546)
..|++++|+..|+++-.
T Consensus 197 ~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 197 LKGKAEEAARAAALEHH 213 (217)
T ss_dssp C----------------
T ss_pred HccCHHHHHHHHHHHhh
Confidence 99999999999988653
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=3.5e-26 Score=211.03 Aligned_cols=259 Identities=13% Similarity=0.103 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
++.++.+|.++...|++++|+..|+++++.+|++. .++..++.++ ...|++++|+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------------~~~~~l~~~~-----------~~~~~~~~A~~~ 59 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP------------YIYNRRAVCY-----------YELAKYDLAQKD 59 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS------------TTHHHHHHHH-----------HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH------------HHHHHHHHHH-----------HHHhhHHHHHHH
Confidence 44556666666666666666666666666544321 1122222222 222333555555
Q ss_pred HHHHHhcCccc----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 231 LKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 231 ~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
|+++++ .|.+ ..++..+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|+++++.+
T Consensus 60 ~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 60 IETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred HHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 555554 2222 22345555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCHHHHHHHH-HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---hH
Q 009045 307 QNHPAALINYA-ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD---HR 382 (546)
Q Consensus 307 p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~ 382 (546)
|.+..++..+| .++ ..+++++|+..|+++++.+|++..++..+|.++..+|+ ++
T Consensus 139 ~~~~~~~~~l~~~~~----------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 196 (272)
T 3u4t_A 139 TTDPKVFYELGQAYY----------------------YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG 196 (272)
T ss_dssp CCCHHHHHHHHHHHH----------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSC
T ss_pred CCcHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhH
Confidence 55555555555 322 22255555555555555555555555555555555555 44
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHH
Q 009045 383 SSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVA 462 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (546)
+|+..|+++++.....+ + +
T Consensus 197 ~A~~~~~~a~~~~~~~~-------------------------------------------~-~----------------- 215 (272)
T 3u4t_A 197 LAKPYYEKLIEVCAPGG-------------------------------------------A-K----------------- 215 (272)
T ss_dssp TTHHHHHHHHHHHGGGG-------------------------------------------G-G-----------------
T ss_pred HHHHHHHHHHHHHhccc-------------------------------------------c-c-----------------
Confidence 45555555544322110 0 0
Q ss_pred HHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 009045 463 AAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 525 (546)
Q Consensus 463 ~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 525 (546)
. ......++..+|.+|...|++++|+.+|+++++++|+++.++-.++.+....+
T Consensus 216 --------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 216 --------Y-KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp --------G-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred --------c-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 0 00112567788999999999999999999999999999999999988876554
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=2.2e-24 Score=216.44 Aligned_cols=374 Identities=13% Similarity=-0.025 Sum_probs=294.3
Q ss_pred ccchhhhhhHHHHHhHhcCCCCcccccccCCC---------CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 009045 100 LGKCRSRISSKMDSALEFGVDADGDQSGLGTS---------SSSREEKGLVHVARKMPKNAHAHFLLGLMYQR----LGQ 166 (546)
Q Consensus 100 ~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~---------~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~ 166 (546)
.++...++ ..|.++++. .+..+++.+|.+ +..+|.+.|+++... .++.+++.+|.+|.. .++
T Consensus 56 ~~~~~~A~-~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 56 TKDLTQAM-DWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCCHHHHH-HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcCHHHHH-HHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 45555555 677777765 334444443332 557889999999875 589999999999999 899
Q ss_pred hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHH
Q 009045 167 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 246 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 246 (546)
+++|+.+|+++.+.. . ...+..+|.+|.. |. -..+++++|+..|+++++. .++.+++
T Consensus 131 ~~~A~~~~~~a~~~~--------~------~~a~~~Lg~~y~~-g~------g~~~d~~~A~~~~~~a~~~--~~~~a~~ 187 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG--------R------DSGQQSMGDAYFE-GD------GVTRDYVMAREWYSKAAEQ--GNVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTT--------C------HHHHHHHHHHHHH-TS------SSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHHHCC--------C------HHHHHHHHHHHHc-CC------CCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 999999999998752 1 2334455554432 11 1246789999999999986 5789999
Q ss_pred HHHHHHHH----cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 247 TLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 247 ~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .+..+++.++.
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 263 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 99999999 89999999999999876 578999999999997 89999999999999875 56788889998
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHh
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-----GDHRSSGKCLEKAAK 393 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~ 393 (546)
++..... ..+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|+++++
T Consensus 264 ~y~~g~~-----------------~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 264 ILEQGLA-----------------GAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HHHHTTT-----------------SSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHCCCC-----------------CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 8872100 278999999999999875 6789999999999998 999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh----cccHHHHHHHHH
Q 009045 394 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT----HHEVAAAFETEE 469 (546)
Q Consensus 394 ~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 469 (546)
.. +..+++.++...... ........+...+.+.+.. .++.+++.+|.++.. .+++++|+..|.
T Consensus 325 ~~--~~~a~~~lg~~y~~~-----g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 325 QG--DATAQANLGAIYFRL-----GSEEEHKKAVEWFRKAAAK------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp TT--CHHHHHHHHHHHHHS-----CCHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHhC-----CCcccHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 64 567777777765542 1223445555555555544 357899999999999 899999999999
Q ss_pred hhccchhhhHHhhHHHHHHH----hccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCChH--HHHHHHHHH
Q 009045 470 NELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDHR--SSGKCLEKV 537 (546)
Q Consensus 470 ~~l~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~--~A~~~~~~a 537 (546)
++....+..+++.+|.+|.. .+++++|+.+|+++++.+|+ ++.++.++|.++....+.. .|..+|+++
T Consensus 392 ~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 392 KAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 99888889999999999998 89999999999999999954 8999999999876533221 244555443
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-25 Score=205.20 Aligned_cols=227 Identities=17% Similarity=0.173 Sum_probs=156.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
.+.+++.+|.++...|++++|+.+|+++++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------------------------------------- 34 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWEL------------------------------------------------- 34 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------------------------------------------------
Confidence 3566777777777777777777777776665
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
+ .++.++..+|.++...|++++|+..|++++.+.|++ +.++..+|.++...|++++|+.+|+++
T Consensus 35 --------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 105 (258)
T 3uq3_A 35 --------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS 105 (258)
T ss_dssp --------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3 345567777777777777777777777777776655 567777777777777777777777777
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 382 (546)
+.+.|. +.++. ..|++++|+..+++++..+|.+..++..+|.++...|+++
T Consensus 106 ~~~~~~--------~~~~~---------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 106 LTEHRT--------ADILT---------------------KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHCCC--------HHHHH---------------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhcCch--------hHHHH---------------------HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 777665 12222 5666777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHH
Q 009045 383 SSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVA 462 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (546)
+|+..|++++..+|.+...+.
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~----------------------------------------------------------- 177 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYS----------------------------------------------------------- 177 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHH-----------------------------------------------------------
T ss_pred HHHHHHHHHHhcCcccHHHHH-----------------------------------------------------------
Confidence 777777777777776542222
Q ss_pred HHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 463 AAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 463 ~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|++++++.
T Consensus 178 -------------------~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 178 -------------------NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp -------------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 222355566666666666666666666666666666666666666666666666666665
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=1.3e-25 Score=213.15 Aligned_cols=276 Identities=13% Similarity=0.104 Sum_probs=237.0
Q ss_pred chhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009045 90 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRL 164 (546)
Q Consensus 90 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 164 (546)
.-..+..+...|+...++ ..+.+++...|+....+...|.+ +..+|...|++++..+|.+..++..+|.++...
T Consensus 24 ~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAA-LAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 345788889999999987 89999999999988887777665 568899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccccc-CC-CccccccChhhHHHHHHHHHHHHhcCcccH
Q 009045 165 GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS-GD-NSLDKELEPEELEEILSKLKESMQSDTRQA 242 (546)
Q Consensus 165 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 242 (546)
|++++|+..|+++++..|...... ....... ..+.....+ |. . +...|++++|+..++++++..|.+.
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~~~~~~~~~~ 172 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLG-----SVNLQAD-VDIDDLNVQSEDFF----FAAPNEYRECRTLLHAALEMNPNDA 172 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------------CC----TTSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHH-----HHHhHHH-HHHHHHHHHHHhHH----HHHcccHHHHHHHHHHHHhhCCCCH
Confidence 999999999999999876542110 0000000 000000011 22 2 5788999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
.++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++..|++..++..++.++.
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~- 251 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS- 251 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009045 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------------AAHIWANLANAYYLTGDHRSSGKCLEK 390 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (546)
..|++++|+..|++++...|. +..++..+|.++..+|++++|...+++
T Consensus 252 --------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 252 --------------------NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred --------------------HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 899999999999999999999 799999999999999999999999998
Q ss_pred HHhcCCC
Q 009045 391 AAKLEPN 397 (546)
Q Consensus 391 al~~~p~ 397 (546)
++...|+
T Consensus 312 ~l~~~~~ 318 (327)
T 3cv0_A 312 NVEPFAK 318 (327)
T ss_dssp CSHHHHH
T ss_pred HHHhcch
Confidence 8876554
No 31
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=2.9e-26 Score=224.58 Aligned_cols=308 Identities=14% Similarity=0.084 Sum_probs=245.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHH
Q 009045 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 227 (546)
Q Consensus 148 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 227 (546)
+....+++.+|.++...|++++|+.+|+++++..|.+ +. ..+.++..+|.++. ..|++++|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~------~~--~~~~~~~~l~~~~~-----------~~g~~~~A 66 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED------LK--TLSAIYSQLGNAYF-----------YLHDYAKA 66 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC------HH--HHHHHHHHHHHHHH-----------HTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccc------HH--HHHHHHHHHHHHHH-----------HhcCHHHH
Confidence 3467789999999999999999999999999996543 11 22455666666654 44556999
Q ss_pred HHHHHHHHhc------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCC----
Q 009045 228 LSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGD---- 291 (546)
Q Consensus 228 ~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~---- 291 (546)
+..|++++.. .|....++..+|.++...|++++|+.+|++++.+.|.. ..++..+|.+|...|+
T Consensus 67 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 146 (406)
T 3sf4_A 67 LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 146 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccc
Confidence 9999999876 45567899999999999999999999999999986643 4589999999999999
Q ss_pred ----------------HHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHH
Q 009045 292 ----------------MEQSAKCFQDLILKDQ------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 292 ----------------~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
+++|+.+|++++.+.+ ....++..+|.++. ..|++++
T Consensus 147 ~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~ 205 (406)
T 3sf4_A 147 PGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHY---------------------LLGNFRD 205 (406)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HHTBHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH---------------------HccCHHH
Confidence 9999999999988632 22334555555554 9999999
Q ss_pred HHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHH
Q 009045 350 AKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQL 423 (546)
Q Consensus 350 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~ 423 (546)
|+.++++++++.+.. ..++..+|.++...|++++|+.+|++++.+.+.......
T Consensus 206 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------- 265 (406)
T 3sf4_A 206 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV-------------------- 265 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--------------------
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH--------------------
Confidence 999999999886553 348999999999999999999999999987665422110
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccch--------hhhHHhhHHHHHHHhccHHH
Q 009045 424 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM--------EECAGAGESAFLDQASAVNV 495 (546)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~la~~~~~~g~~~~ 495 (546)
...++..+|.++...|++++|+..+.+.+... ...++..+|.++...|++++
T Consensus 266 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 266 --------------------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred --------------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 12468889999999999999999999866522 13568899999999999999
Q ss_pred HHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009045 496 AKECLLAALKADP------KAAHIWANLANAYYLTGDHRSSGKCLE 535 (546)
Q Consensus 496 A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (546)
|+.+|++++++.+ ....++..+|.++...|+...+...+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 9999999998743 347789999999999998755444333
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.94 E-value=1.1e-24 Score=201.14 Aligned_cols=245 Identities=15% Similarity=0.095 Sum_probs=212.5
Q ss_pred ccChhhHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 218 ELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
....|++++|+..|+++++. .|.++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 46779999999999999987 46778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
+|+.+|+++++.+|.+..++..+|.++. ..|++++|+..|+++++++|++......++.
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALY---------------------YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL 153 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999999999999999999999888 8999999999999999999999877766664
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
+ ...|++++|+..+++++...|.+...+ .++.
T Consensus 154 ~-~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~ 185 (275)
T 1xnf_A 154 A-EQKLDEKQAKEVLKQHFEKSDKEQWGW-----------------------------------------------NIVE 185 (275)
T ss_dssp H-HHHHCHHHHHHHHHHHHHHSCCCSTHH-----------------------------------------------HHHH
T ss_pred H-HHhcCHHHHHHHHHHHHhcCCcchHHH-----------------------------------------------HHHH
Confidence 4 667999999999999999988764322 2444
Q ss_pred HHHhcccHHHHHHHHHhhccchh------hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 009045 454 VQKTHHEVAAAFETEENELSKME------ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 527 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 527 (546)
.+...++.++|+..+.+.+...+ ...++.+|.++...|++++|+.+|+++++.+|++... .+.++...|++
T Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~ 262 (275)
T 1xnf_A 186 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLL 262 (275)
T ss_dssp HHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHH
Confidence 55566777888888888666443 5778899999999999999999999999999987543 47888999999
Q ss_pred HHHHHHH
Q 009045 528 RSSGKCL 534 (546)
Q Consensus 528 ~~A~~~~ 534 (546)
++|++.|
T Consensus 263 ~~a~~~~ 269 (275)
T 1xnf_A 263 GQDQDDL 269 (275)
T ss_dssp HHC----
T ss_pred HhhHHHH
Confidence 9999887
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=4.5e-24 Score=216.43 Aligned_cols=400 Identities=12% Similarity=0.023 Sum_probs=267.3
Q ss_pred HHHhHhcCCCCcccccccCCC----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccch
Q 009045 111 MDSALEFGVDADGDQSGLGTS----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEA 186 (546)
Q Consensus 111 ~~~al~~~~~~~~~~~~~g~~----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 186 (546)
++++|+.+|.+...|...+.. +..++...|++++..+|.+...|..+|..+...|++++|+..|++++...|+..
T Consensus 2 le~al~~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~- 80 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID- 80 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH-
T ss_pred hhhHhhhCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH-
Confidence 567778888877766544332 448889999999999999999999999999999999999999999999876321
Q ss_pred hccchhhHHHHHHH-hhcc--------------ccccccCCC--ccc----------------cccChhhHHHHHHHHHH
Q 009045 187 DIARPELLSLVQIH-HAQC--------------LLPESSGDN--SLD----------------KELEPEELEEILSKLKE 233 (546)
Q Consensus 187 ~~~~~~~~~~~~~~-~~~~--------------~~~~~~g~~--~~~----------------~~~~~~~~~~A~~~~~~ 233 (546)
-+...+... ...+ .+....|.. ... .+...|++++|..+|++
T Consensus 81 -----lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 81 -----LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -----HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 111111000 0000 000001100 000 00114666666677777
Q ss_pred HHhcCcccH--HHHHHHHHHHH-------------HcCChHHHHHHHHh------hHhc-----CCCC-------hHHHH
Q 009045 234 SMQSDTRQA--VVWNTLGLILL-------------KSGRLQSSISVLSS------LLAV-----DPNN-------CDCIG 280 (546)
Q Consensus 234 al~~~p~~~--~~~~~l~~~~~-------------~~g~~~~A~~~~~~------al~~-----~p~~-------~~~~~ 280 (546)
+++ .|... ..|...+.... ..+++..|...|.. .++. .|.. ...|.
T Consensus 156 al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 156 GCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp HTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred HHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 666 34332 22322222111 23345555555544 3321 2221 12333
Q ss_pred HHHHHHHH----cCCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHH----
Q 009045 281 NLGIAYFQ----SGDM----EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN---- 348 (546)
Q Consensus 281 ~la~~~~~----~g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 348 (546)
........ .++. ..++..|++++..+|.++..|+.++.++.... ......|+++
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~--------------~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSS--------------KLLAEKGDMNNAKL 300 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------HHHHTTTCCHHHHH
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------------hhhhhccchhhhhh
Confidence 32222111 1222 47788899999999999999999888876210 0000268876
Q ss_pred ---HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhhhccCchhHH
Q 009045 349 ---VAKECLLAALK-ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM-STRYAVAVSRIKDAERSQEPTEQL 423 (546)
Q Consensus 349 ---~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~l~~~~~~~~~~~~~ 423 (546)
+|+..|+++++ ..|++..+|..+|.++...|++++|...|+++++..|.++ .+|...+...... ..+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--------~~~ 372 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA--------EGI 372 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH--------HHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh--------cCH
Confidence 99999999997 8999999999999999999999999999999999999885 4666555432221 122
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHH
Q 009045 424 SWAGNEMASILREGDPVQIEPPIAWAGFAAV-QKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECL 500 (546)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 500 (546)
..+...+...+.. .+.....+...+.+ +...|++++|...|.+.+. +.....|..++.++...|++++|...|
T Consensus 373 ~~A~~~~~~Al~~----~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 373 KSGRMIFKKARED----ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHTC----TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhc----cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 3333333333332 33445556655555 3468999999999999766 555678899999999999999999999
Q ss_pred HHHHHhCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 501 LAALKADPKAAH----IWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 501 ~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
++++...|.++. +|...+......|+.+.+..+++++++.++.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999998776544 8888888889999999999999999999874
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=1.8e-24 Score=200.48 Aligned_cols=254 Identities=11% Similarity=0.053 Sum_probs=216.9
Q ss_pred ccChhhHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
.+..|++.+|+..+++....+|++ ......++.+|+.+|++++|+..++.. +|....++..++..+...|++++|+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 345788999999999998888887 468888999999999999999988762 5666788999999999999999999
Q ss_pred HHHHHHHhh--CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009045 297 KCFQDLILK--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374 (546)
Q Consensus 297 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 374 (546)
+.+++++.. +|++..+++.+|.++. ..|++++|+..|++ |.+..++..+|.+
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~---------------------~~g~~~~Al~~l~~-----~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYF---------------------YDQNPDAALRTLHQ-----GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHH---------------------HTTCHHHHHHHHTT-----CCSHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHhC-----CCCHHHHHHHHHH
Confidence 999999876 6999999999998888 89999999999998 8999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
+..+|++++|+..|+++++.+|++.......+ |. .+
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a-----------------------------------------~~---~l 175 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATA-----------------------------------------WV---SL 175 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-----------------------------------------HH---HH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH-----------------------------------------HH---HH
Confidence 99999999999999999999998643221111 11 22
Q ss_pred HHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH-HH
Q 009045 455 QKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS-SG 531 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-A~ 531 (546)
+...|++++|+..|.+.+. +.....++++|.++...|++++|+..|+++++++|++++++.++|.++...|++.+ +.
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~ 255 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 3356889999999988655 55667788999999999999999999999999999999999999999999999876 56
Q ss_pred HHHHHHHHHhccc
Q 009045 532 KCLEKVLMVYCSS 544 (546)
Q Consensus 532 ~~~~~al~~~~~~ 544 (546)
.++++++++.|..
T Consensus 256 ~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 256 RYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCC
Confidence 8889998887653
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=3.5e-25 Score=204.24 Aligned_cols=234 Identities=13% Similarity=0.093 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA----ALINYAA 318 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~ 318 (546)
..++.+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++. .|.+.. ++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666 332222 2445554
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
++. ..|++++|+.+|+++++.+|.+..++..+|.+|...|++++|+.+|+++++.+|.+
T Consensus 83 ~~~---------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 83 ILM---------------------KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHH---------------------HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHH---------------------HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 444 66666666666666666666666666666666666666666666666666666655
Q ss_pred hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chh
Q 009045 399 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KME 476 (546)
Q Consensus 399 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~ 476 (546)
...+ ..+|......+++++|+..+.+.+. +..
T Consensus 142 ~~~~----------------------------------------------~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 142 PKVF----------------------------------------------YELGQAYYYNKEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp HHHH----------------------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHH----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 4333 3333111122356666666665433 333
Q ss_pred hhHHhhHHHHHHHhcc---HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 477 ECAGAGESAFLDQASA---VNVAKECLLAALKAD---PK-----AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 477 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
..+++.+|.++...|+ +++|+..|+++++.. |+ ...++..+|.+|...|++++|+.+|++++++.|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 4566677778888888 888999999999875 44 23689999999999999999999999999988653
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=1.7e-24 Score=200.70 Aligned_cols=223 Identities=11% Similarity=0.090 Sum_probs=181.0
Q ss_pred hHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 134 SREEKGLVHVARKMPKN-AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
..+...++++...+|++ .++...++.+|..+|++++|+..++.. . .|.. ..+..++..+
T Consensus 16 ~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~--------~~~~----~a~~~la~~~----- 75 (291)
T 3mkr_A 16 QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S--------APEL----QAVRMFAEYL----- 75 (291)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S--------CHHH----HHHHHHHHHH-----
T ss_pred HHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C--------ChhH----HHHHHHHHHH-----
Confidence 55555555555556665 467888999999999999999877552 1 2221 2333333333
Q ss_pred CccccccChhhHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC
Q 009045 213 NSLDKELEPEELEEILSKLKESMQS--DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 290 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 290 (546)
...++.++|++.+++++.. +|+++.+++.+|.++...|++++|+..|++ |.+..++..+|.++..+|
T Consensus 76 ------~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g 144 (291)
T 3mkr_A 76 ------ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLD 144 (291)
T ss_dssp ------HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTT
T ss_pred ------cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCC
Confidence 3456679999999999876 699999999999999999999999999998 899999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 291 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
++++|+..|+++++.+|++.......+.+.. +...|++++|+..|+++++.+|+++.++..
T Consensus 145 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l-------------------~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~ 205 (291)
T 3mkr_A 145 RLDLARKELKKMQDQDEDATLTQLATAWVSL-------------------AAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------------------HHCTTHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-------------------HhCchHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999999999999998644433332222 125689999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
+|.++..+|++++|+..|++++..+|+++.++.+++
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999999876654443
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=2.1e-25 Score=219.04 Aligned_cols=281 Identities=17% Similarity=0.124 Sum_probs=227.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 149 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
.....++.+|.++...|++++|+.+|+++++..|++. .
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------~------------------------------------ 83 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL------R------------------------------------ 83 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH------H------------------------------------
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh------h------------------------------------
Confidence 3456677888899999999999988888888744320 0
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
....++..+|.++...|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|+++
T Consensus 84 -----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 152 (411)
T 4a1s_A 84 -----------TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH 152 (411)
T ss_dssp -----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 01346788899999999999999999999887 4666788999999999999999999999999
Q ss_pred Hhh------CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcC-----------------HHHHHHHHHHHHh
Q 009045 303 ILK------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-----------------VNVAKECLLAALK 359 (546)
Q Consensus 303 l~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~al~ 359 (546)
+.+ .+....++..+|.++. ..|+ +++|+.+++++++
T Consensus 153 l~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 153 LTLARQLGDRLSEGRALYNLGNVYH---------------------AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHH---------------------HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHH---------------------HcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 887 3444455666666665 7888 9999999999988
Q ss_pred cC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 009045 360 AD------PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASI 433 (546)
Q Consensus 360 ~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 433 (546)
+. +....++..+|.++...|++++|+.+|++++++.+.......
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------ 261 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA------------------------------ 261 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH------------------------------
Confidence 64 234568999999999999999999999999988764321110
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchh--------hhHHhhHHHHHHHhccHHHHHHHHHHHHH
Q 009045 434 LREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--------ECAGAGESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
...++..+|.++...|++++|+..+.+.+...+ ...+..+|.++...|++++|+.+|+++++
T Consensus 262 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 262 ----------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp ----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 124688899999999999999999998665332 46788999999999999999999999998
Q ss_pred hCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 506 ADPKA------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 506 ~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+.+.. ..++..+|.+|...|++++|+.+|+++++++.+
T Consensus 332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 75433 568999999999999999999999999998754
No 38
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.93 E-value=9.3e-25 Score=217.16 Aligned_cols=224 Identities=18% Similarity=0.182 Sum_probs=199.3
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCh-HHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL-QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
+.+++++..+.+.....|.++.+++.+|.++...|++ ++|+.+|+++++++|++..+|..+|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4468889999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--
Q 009045 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-- 378 (546)
Q Consensus 301 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-- 378 (546)
++++++|+ ..++..+|.++... ..+......|++++|+..|+++++++|++..+|..+|.+|...
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~------------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQL------------QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTC------------CCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHh------------ccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 68899999888711 0122223339999999999999999999999999999999999
Q ss_pred ------CChHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHH
Q 009045 379 ------GDHRSSGKCLEKAAKLEP---NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 449 (546)
Q Consensus 379 ------g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (546)
|++++|+.+|+++++++| ++..++
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~----------------------------------------------- 261 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLH----------------------------------------------- 261 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHH-----------------------------------------------
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHHHH-----------------------------------------------
Confidence 999999999999999998 554333
Q ss_pred HHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH
Q 009045 450 GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 529 (546)
Q Consensus 450 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 529 (546)
+++|.+|...|++++|+..|+++++++|++..++..++.++...|++++
T Consensus 262 -------------------------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 262 -------------------------------LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp -------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344478888999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 009045 530 SGKCLEK 536 (546)
Q Consensus 530 A~~~~~~ 536 (546)
|+..+.+
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 9987654
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3e-24 Score=196.15 Aligned_cols=227 Identities=15% Similarity=0.089 Sum_probs=203.3
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|...|+++++.+ .++.+++.+|.++...|++++|+..|++++++.|+. .++......++..+|.++..+
T Consensus 22 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~--- 92 (258)
T 3uq3_A 22 DEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-----RADYKVISKSFARIGNAYHKL--- 92 (258)
T ss_dssp HHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-----ccchHHHHHHHHHHHHHHHHc---
Confidence 78888899999999 999999999999999999999999999999998764 223333356677777776544
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
|++++|+..|++++...|. +.++...|++++|+..+++++..+|.+..++..+|.++...|+++
T Consensus 93 --------~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 93 --------GDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp --------TCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred --------ccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 5559999999999999987 567788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
+|+..|++++..+|.+..++..+|.++. ..|++++|+..|+++++.+|+++.++..+|.
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 215 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALA---------------------KLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 215 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9999999999999999999999998887 8999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcC------CCChhHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLE------PNCMSTRYAVA 406 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~ 406 (546)
++...|++++|+.+|+++++++ |++...+..+.
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 9999999999999999999999 87766555443
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=2.4e-23 Score=192.00 Aligned_cols=229 Identities=14% Similarity=0.085 Sum_probs=207.5
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 313 (546)
+|+++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.+ +..++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 577899999999999999999999999999998 7889999999999999 999999999999999885 78889
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHh----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHH
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSG 385 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 385 (546)
..+|.++. . .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+
T Consensus 78 ~~lg~~~~---------------------~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 78 HLLGNLYY---------------------SGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp HHHHHHHH---------------------HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHHHh---------------------CCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHH
Confidence 99998887 6 89999999999999997 479999999999999 99999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh----cccH
Q 009045 386 KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT----HHEV 461 (546)
Q Consensus 386 ~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 461 (546)
.+|+++++..+ . .++..+|.++.. .+++
T Consensus 135 ~~~~~a~~~~~--~----------------------------------------------~a~~~lg~~~~~~~~~~~~~ 166 (273)
T 1ouv_A 135 EYFTKACDLND--G----------------------------------------------DGCTILGSLYDAGRGTPKDL 166 (273)
T ss_dssp HHHHHHHHTTC--H----------------------------------------------HHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHhcCc--H----------------------------------------------HHHHHHHHHHHcCCCCCCCH
Confidence 99999998652 2 346677777777 8999
Q ss_pred HHHHHHHHhhccchhhhHHhhHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHH
Q 009045 462 AAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKC 533 (546)
Q Consensus 462 ~~A~~~~~~~l~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~ 533 (546)
++|+..+.+.+...+..+++.+|.+|.. .+++++|+.+|+++++..| +.+++.+|.+|.. .+++++|+.+
T Consensus 167 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~ 244 (273)
T 1ouv_A 167 KKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIEN 244 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9999999998888888999999999999 9999999999999999866 8899999999999 9999999999
Q ss_pred HHHHHHHhcc
Q 009045 534 LEKVLMVYCS 543 (546)
Q Consensus 534 ~~~al~~~~~ 543 (546)
|++++++-+.
T Consensus 245 ~~~a~~~~~~ 254 (273)
T 1ouv_A 245 FKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHTCH
T ss_pred HHHHHHcCCH
Confidence 9999987643
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=3.5e-24 Score=193.90 Aligned_cols=210 Identities=10% Similarity=0.106 Sum_probs=178.8
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 112 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKD 112 (243)
T ss_dssp ---------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHH
Confidence 56777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
.|+++++..|.+...+..++.++. ..|++++|+..++++++..|.+..++..+|.++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 113 MFEKALRAGMENGDLFYMLGTVLV---------------------KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHH---------------------HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 999999999999999888888887 88999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 457 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (546)
.|++++|+..|++++...|++...+.
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 197 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADAFY------------------------------------------------------ 197 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHHHH------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHH------------------------------------------------------
Confidence 99999999999999999887654332
Q ss_pred cccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 458 HHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 458 ~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
.+|.++...|++++|+.+|+++++++|++..++..++.+....|+
T Consensus 198 ------------------------~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 198 ------------------------NAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp ------------------------HHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred ------------------------HHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 334477888999999999999999999999999999888765553
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=213.20 Aligned_cols=264 Identities=16% Similarity=0.156 Sum_probs=222.5
Q ss_pred cChhhHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCChHHHHHHHHhhHhc------CCCChHHHHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQ 288 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~ 288 (546)
+..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+.+|++++.+ .|....++..+|.++..
T Consensus 20 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 99 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 99 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 45677799999999999999987 468899999999999999999999999887 34457789999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcC----------------
Q 009045 289 SGDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA---------------- 346 (546)
Q Consensus 289 ~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 346 (546)
.|++++|+.++++++.+.+.. ..++..+|.++. ..|+
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH---------------------AKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------------------HHHHTCC-------CCCCHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH---------------------HcCCcccccccchhhhhhhh
Confidence 999999999999999887643 224555555554 8888
Q ss_pred ----HHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhc
Q 009045 347 ----VNVAKECLLAALKA------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS 416 (546)
Q Consensus 347 ----~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~ 416 (546)
+++|+.++++++.+ .+....++..+|.++...|++++|+.+|++++.+.+.......
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------- 225 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------------- 225 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH-------------
Confidence 99999999999887 3345678999999999999999999999999988665432111
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchh--------hhHHhhHHHHHH
Q 009045 417 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--------ECAGAGESAFLD 488 (546)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~la~~~~ 488 (546)
...++..+|.++...|++++|+..+.+.+...+ ..++..+|.++.
T Consensus 226 ---------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 278 (406)
T 3sf4_A 226 ---------------------------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 278 (406)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH
Confidence 124688999999999999999999998665222 456889999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 489 QASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 489 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
..|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++++...
T Consensus 279 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999985543 678999999999999999999999999998754
No 43
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=6.3e-23 Score=208.02 Aligned_cols=364 Identities=10% Similarity=0.004 Sum_probs=269.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCcccccc
Q 009045 140 LVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKEL 219 (546)
Q Consensus 140 ~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 219 (546)
|+++++.+|.+..+|..++.. ...|++++|...|+++++.+|.+ ..+|..++..+ .
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~------------~~~w~~~~~~~-----------~ 57 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSS------------GRFWKLYIEAE-----------I 57 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTC------------HHHHHHHHHHH-----------H
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCC------------HHHHHHHHHHH-----------H
Confidence 678999999999999999984 78999999999999999997764 23344444443 3
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHcCChHHHHH----HHHhhHhc---CCCChHHHHHHHHHHHH---
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGL-ILLKSGRLQSSIS----VLSSLLAV---DPNNCDCIGNLGIAYFQ--- 288 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~--- 288 (546)
..|++++|...|++++...| +...|..++. +....|++++|.+ .|++++.. +|....+|...+.....
T Consensus 58 ~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 58 KAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC
T ss_pred hcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC
Confidence 44666999999999999999 5778888885 4456788888776 78887754 56778889888887765
Q ss_pred ------cCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHH--------------------------------hhCccc
Q 009045 289 ------SGDMEQSAKCFQDLILKDQNHP--AALINYAALLLC--------------------------------KYGSVL 328 (546)
Q Consensus 289 ------~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~--------------------------------~~~~~~ 328 (546)
.|+++.|+..|+++++ .|... ..|......... ......
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~ 215 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA 215 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred cccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7899999999999999 57543 223222221100 000000
Q ss_pred cc-c-----------ccccccchHHHh----hcC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCh
Q 009045 329 AG-A-----------GANTGEGACLDQ----ASA----VNVAKECLLAALKADPKAAHIWANLANAYYL-------TGDH 381 (546)
Q Consensus 329 ~~-~-----------~~~~~~~~~~~~----~~~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~g~~ 381 (546)
.. . ..+......... .++ ...++..|++++..+|.++.+|..+|..+.. .|++
T Consensus 216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccch
Confidence 00 0 000000000001 122 2478899999999999999999999999986 7998
Q ss_pred H-------HHHHHHHHHHh-cCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcH-HHHHHHH
Q 009045 382 R-------SSGKCLEKAAK-LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP-IAWAGFA 452 (546)
Q Consensus 382 ~-------~A~~~~~~al~-~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 452 (546)
+ +|+..|+++++ ..|++...+..++...... ..+..+...+.+.+.. .|..+ .+|..++
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~--------g~~~~A~~~~~~al~~----~p~~~~~~~~~~~ 363 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR--------MKYEKVHSIYNRLLAI----EDIDPTLVYIQYM 363 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHS----SSSCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc--------CCHHHHHHHHHHHhCc----cccCchHHHHHHH
Confidence 7 99999999997 8999998888877654332 1223333334444442 34443 5899999
Q ss_pred HHHHhcccHHHHHHHHHhhccchhh--hHHhhHHHH-HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH
Q 009045 453 AVQKTHHEVAAAFETEENELSKMEE--CAGAGESAF-LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 529 (546)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 529 (546)
.++...|++++|...|.+++...+. ..+...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.++
T Consensus 364 ~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 364 KFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh
Confidence 9999999999999999998874433 334444433 3468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 009045 530 SGKCLEKVLMVY 541 (546)
Q Consensus 530 A~~~~~~al~~~ 541 (546)
|...|++++...
T Consensus 444 Ar~~~~~al~~~ 455 (530)
T 2ooe_A 444 TRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhcc
Confidence 999999999864
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=1.3e-23 Score=181.36 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=132.9
Q ss_pred HhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 235 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 235 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
++.+|+++.++..+|.++...|++++|+..+.+++...|++..++..+|.++...++++.|+..+.+++..+|.+..++.
T Consensus 32 l~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 111 (184)
T 3vtx_A 32 LKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYY 111 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 33467778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
.+|.++. ..|++++|+..|+++++++|.++.++..+|.+|..+|++++|+.+|++++++
T Consensus 112 ~lg~~~~---------------------~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 112 KLGLVYD---------------------SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHH---------------------HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 9888887 8899999999999999999999999999999999999999999999999999
Q ss_pred CCCCh
Q 009045 395 EPNCM 399 (546)
Q Consensus 395 ~p~~~ 399 (546)
+|+++
T Consensus 171 ~p~~a 175 (184)
T 3vtx_A 171 EEKKA 175 (184)
T ss_dssp THHHH
T ss_pred CccCH
Confidence 98764
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=1.4e-23 Score=181.10 Aligned_cols=144 Identities=17% Similarity=0.293 Sum_probs=136.2
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
+++.+|+.+|.+|..+|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..+.+++...|.+..++..++.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
+. ..++++.|+..+.+++..+|.+..++..+|.+|..+|++++|+..|+++++++|++.
T Consensus 83 ~~---------------------~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 83 NF---------------------MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp HH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HH---------------------HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 87 889999999999999999999999999999999999999999999999999999876
Q ss_pred hHHHH
Q 009045 400 STRYA 404 (546)
Q Consensus 400 ~~~~~ 404 (546)
.+++.
T Consensus 142 ~~~~~ 146 (184)
T 3vtx_A 142 RAYQS 146 (184)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 54433
No 46
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=1.8e-24 Score=205.84 Aligned_cols=282 Identities=17% Similarity=0.113 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
...++..|.++...|++++|+..|+++++..|.+ + .....++..+|.++. ..|++++|+..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~------~--~~~~~~~~~l~~~~~-----------~~g~~~~A~~~ 65 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED------L--KTLSAIYSQLGNAYF-----------YLHDYAKALEY 65 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC------H--HHHHHHHHHHHHHHH-----------HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc------H--HHHHHHHHHHHHHHH-----------HcCCHHHHHHH
Confidence 4567889999999999999999999999986553 1 122355666666654 44556999999
Q ss_pred HHHHHhc------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCC-------
Q 009045 231 LKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGD------- 291 (546)
Q Consensus 231 ~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~------- 291 (546)
+++++.. .|....++..+|.++...|++++|+..|++++.+.+.. ..++..+|.++...|+
T Consensus 66 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (338)
T 3ro2_A 66 HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP 145 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchh
Confidence 9999877 55667899999999999999999999999999886543 3489999999999999
Q ss_pred -------------HHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 292 -------------MEQSAKCFQDLILKDQ------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 292 -------------~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
+++|+..+++++.+.+ .....+..+|.+ +...|++++|+.
T Consensus 146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~~~~~~A~~ 204 (338)
T 3ro2_A 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT---------------------HYLLGNFRDAVI 204 (338)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------HHHHTCHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---------------------HHHhCCHHHHHH
Confidence 9999999999987632 222334444444 449999999999
Q ss_pred HHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHH
Q 009045 353 CLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWA 426 (546)
Q Consensus 353 ~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 426 (546)
+++++++..+.. ..++..+|.++...|++++|+.++++++.+.+......
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------ 260 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA------------------------ 260 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH------------------------
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh------------------------
Confidence 999999875542 34899999999999999999999999997755432110
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHh
Q 009045 427 GNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKA 506 (546)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 506 (546)
....++..+|.++...|++++|+.+++++++.
T Consensus 261 ------------------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 261 ------------------------------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 01123344555777777788888888888776
Q ss_pred CCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 507 DPKA------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 507 ~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
.+.. ..++..+|.+|...|++++|..+|++++++.++.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 4432 5578899999999999999999999999887653
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=4.7e-23 Score=187.62 Aligned_cols=209 Identities=16% Similarity=0.186 Sum_probs=178.6
Q ss_pred hcCccc-HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 236 QSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 236 ~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
..+|.. +.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|.+...+.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 356766 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK--ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
.++.++. ..|++++|+.+|++++. ..|.+..++..+|.++...|++++|+.+|++++
T Consensus 110 ~la~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 110 NYGGFLY---------------------EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHHHHH---------------------HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9988887 89999999999999999 888899999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc
Q 009045 393 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 472 (546)
Q Consensus 393 ~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 472 (546)
+..|.+...+ ..+|.
T Consensus 169 ~~~~~~~~~~----------------------------------------------~~la~------------------- 183 (252)
T 2ho1_A 169 RLNRNQPSVA----------------------------------------------LEMAD------------------- 183 (252)
T ss_dssp HHCSCCHHHH----------------------------------------------HHHHH-------------------
T ss_pred hcCcccHHHH----------------------------------------------HHHHH-------------------
Confidence 9988764332 22333
Q ss_pred cchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 473 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 473 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
++...|++++|+.+++++++..|++..++..++.++...|++++|..++++++++.+.
T Consensus 184 -------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 184 -------------LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp -------------HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -------------HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 5556666777777777777777777777777777777777777777777777766554
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=2e-23 Score=188.83 Aligned_cols=205 Identities=13% Similarity=0.121 Sum_probs=172.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+..++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|.+..++..++.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
. ..|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++..|++..
T Consensus 102 ~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 160 (243)
T 2q7f_A 102 V---------------------VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160 (243)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred H---------------------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence 7 8999999999999999999999999999999999999999999999999999987653
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHH
Q 009045 401 TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAG 480 (546)
Q Consensus 401 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 480 (546)
.+.
T Consensus 161 ~~~----------------------------------------------------------------------------- 163 (243)
T 2q7f_A 161 ARF----------------------------------------------------------------------------- 163 (243)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 332
Q ss_pred hhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 481 AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
.+|.++...|++++|+..|+++++..|+++.++..+|.+|...|++++|+.+|++++++.+..
T Consensus 164 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 164 -QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp -HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 334477888999999999999999999999999999999999999999999999999987643
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=3.5e-23 Score=188.47 Aligned_cols=214 Identities=20% Similarity=0.196 Sum_probs=194.8
Q ss_pred hCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhH
Q 009045 146 KMPKN-AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL 224 (546)
Q Consensus 146 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 224 (546)
.+|.+ +.+++.+|.++...|++++|+..|+++++..|.. ..++..++.++. ..|++
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~-----------~~~~~ 87 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS------------ADAHAALAVVFQ-----------TEMEP 87 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC------------HHHHHHHHHHHH-----------HTTCH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh------------HHHHHHHHHHHH-----------HcCCH
Confidence 45655 8899999999999999999999999999986543 234555555544 45566
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHh--cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
++|+..|+++++.+|.+..++..+|.++...|++++|+.+|++++. ..|.+..++..+|.++...|++++|+.+|+++
T Consensus 88 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 88 KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 88889999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 382 (546)
++..|.+..++..++.++. ..|++++|+..++++++..|.+...+..++.++...|+++
T Consensus 168 ~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 168 LRLNRNQPSVALEMADLLY---------------------KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp HHHCSCCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HhcCcccHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHH
Confidence 9999999999999888887 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHH
Q 009045 383 SSGKCLEKAAKLEPNCMSTRY 403 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~~ 403 (546)
+|..+++++++..|++.....
T Consensus 227 ~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 227 TAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999876654
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=2.5e-22 Score=185.20 Aligned_cols=234 Identities=13% Similarity=0.086 Sum_probs=138.6
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHH
Q 009045 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 147 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
+|.++.+++.+|.++...|++++|+.+|+++++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------------------------------------------- 35 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---------------------------------------------- 35 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------------------------------------------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------------------------------------------
Confidence 5788999999999999999999999999988762
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHH----cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH----cCCHHHHHHH
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKC 298 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 298 (546)
+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+.+
T Consensus 36 -------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 100 (273)
T 1ouv_A 36 -------------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQY 100 (273)
T ss_dssp -------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 123344455555555 555555555555555443 45555555555555 5555555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHh----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANA 374 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 374 (546)
|+++++.+ +..++..+|.++. . .+++++|+.+|+++++.. ++.++..+|.+
T Consensus 101 ~~~a~~~~--~~~a~~~lg~~~~---------------------~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 101 YSKACDLK--YAEGCASLGGIYH---------------------DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHH---------------------HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHcC--CccHHHHHHHHHH---------------------cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 55555442 4444555554444 3 455555555555555543 34455555555
Q ss_pred HHH----cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHH
Q 009045 375 YYL----TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAG 450 (546)
Q Consensus 375 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (546)
|.. .+++++|+.+|+++++..+ +.++..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~------------------------------------------------~~a~~~ 187 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKD------------------------------------------------SPGCFN 187 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTC------------------------------------------------HHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCC------------------------------------------------HHHHHH
Confidence 555 5555555555555554321 123344
Q ss_pred HHHHHHh----cccHHHHHHHHHhhccchhhhHHhhHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHH
Q 009045 451 FAAVQKT----HHEVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIW 514 (546)
Q Consensus 451 l~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 514 (546)
+|.++.. .+++++|+..+.+.+...+..+++.+|.+|.. .+++++|+.+|++++++.|+++..+
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444 55555555555555444445566677778887 8889999999999999988655443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=1.8e-22 Score=180.20 Aligned_cols=207 Identities=11% Similarity=0.017 Sum_probs=173.7
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
..|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++...|.+...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhCccccccccccccchHHHhh-cCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQA-SAVNVAKECLLAALK--ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
+.++. .. |++++|+..++++++ ..|.+..++..+|.++...|++++|+..|+++++
T Consensus 83 ~~~~~---------------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 83 GWFLC---------------------GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHH---------------------TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH---------------------HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88887 88 999999999999999 6777789999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc
Q 009045 394 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 473 (546)
Q Consensus 394 ~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 473 (546)
..|++... +..+|.
T Consensus 142 ~~~~~~~~----------------------------------------------~~~la~-------------------- 155 (225)
T 2vq2_A 142 AQPQFPPA----------------------------------------------FKELAR-------------------- 155 (225)
T ss_dssp HSTTCHHH----------------------------------------------HHHHHH--------------------
T ss_pred hCCCCchH----------------------------------------------HHHHHH--------------------
Confidence 98876433 233333
Q ss_pred chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 474 KMEECAGAGESAFLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 474 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
++...|++++|+..++++++..| ++..++..++.++...|++++|..+++.+++..+
T Consensus 156 ------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 156 ------------TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp ------------HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ------------HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 55566666666666666666666 6666666666666666666666666666665554
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=1.1e-22 Score=181.65 Aligned_cols=215 Identities=13% Similarity=0.050 Sum_probs=194.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHH
Q 009045 146 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 225 (546)
Q Consensus 146 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 225 (546)
.+|.++.+++.+|.++...|++++|+..|+++++..|.. ..++..++.++. ..|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~-----------~~~~~~ 59 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN------------ELAWLVRAEIYQ-----------YLKVND 59 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH-----------HTTCHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc------------hHHHHHHHHHHH-----------HcCChH
Confidence 467889999999999999999999999999999997653 234455555544 445569
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CChHHHHHHHHhhHh--cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 226 EILSKLKESMQSDTRQAVVWNTLGLILLKS-GRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
+|+..|++++..+|.+..++..+|.++... |++++|+..|++++. ..|.+..++..+|.++...|++++|+..|+++
T Consensus 60 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 60 KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999 66777899999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCh
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGDH 381 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 381 (546)
++..|.+...+..++.++. ..|++++|+..++++++..| .+...+..++.++...|++
T Consensus 140 ~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 140 LAAQPQFPPAFKELARTKM---------------------LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHSTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHhCCCCchHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 9999999999999988887 89999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHH
Q 009045 382 RSSGKCLEKAAKLEPNCMSTRYA 404 (546)
Q Consensus 382 ~~A~~~~~~al~~~p~~~~~~~~ 404 (546)
++|..+++.+.+.+|++......
T Consensus 199 ~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 199 QAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999876543
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.91 E-value=3.9e-23 Score=204.15 Aligned_cols=341 Identities=14% Similarity=0.031 Sum_probs=161.0
Q ss_pred hhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----Cc---hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009045 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SS---SREEKGLVHVARKMPKNAHAHFLLGLMYQRLG 165 (546)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~---~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 165 (546)
+....+.|+...++ ..|.++++. .+..+++.+|.+ .. .+|.+.|+++++. ++.+++.+|.++...|
T Consensus 10 a~~~~~~g~~~~A~-~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 10 ANEALKRGDTVTAQ-QNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHhCCCHHHHH-HHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCC
Confidence 44455555555554 555555444 234445555544 12 4455555555543 4555555665444444
Q ss_pred -----ChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcc
Q 009045 166 -----QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR 240 (546)
Q Consensus 166 -----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 240 (546)
++++|+.+|+++++..+ ..+++.+|.+|...+.. . .+ .++...+.++.. +.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~--------------~~A~~~Lg~~y~~~~~~------~-~~-~~a~~~~~~a~~--~g 139 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE--------------GNTLIPLAMLYLQYPHS------F-PN-VNAQQQISQWQA--AG 139 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC--------------SSCHHHHHHHHHHCGGG------C-TT-CCHHHHHHHHHH--HT
T ss_pred CCCCcCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhCCCC------C-CC-HHHHHHHHHHHH--CC
Confidence 45556666666555321 11344444444333322 0 01 233444443332 22
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHH----HHhhHhcCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISV----LSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 313 (546)
++.+++.+|.+|...+.+++++.. ++.+...+ +.+++.+|.+|...| ++++|+.+|+++....+.....+
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 344555566666555544333332 33332222 225556666666655 55566666666666555555555
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHH
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA-Y--YLTGDHRSSGKCLEK 390 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~ 390 (546)
+.+|.+|.. |. ...+++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|++
T Consensus 217 ~~Lg~~y~~---------------g~--~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 217 DSVARVLGD---------------AT--LGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHHHHHHTC---------------GG--GSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHhC---------------CC--CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 555555530 00 01145566666666655 5555566666655 3 345556666666666
Q ss_pred HHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcc-----cHHHHH
Q 009045 391 AAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH-----EVAAAF 465 (546)
Q Consensus 391 al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~ 465 (546)
+.+.. ++ .+++.+|.+|. .| ++++|+
T Consensus 277 Aa~~g--~~----------------------------------------------~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 277 GRAAD--QP----------------------------------------------RAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHTT--CH----------------------------------------------HHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHCC--CH----------------------------------------------HHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 55332 33 44555555554 33 566666
Q ss_pred HHHHhhccchhhhHHhhHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHH
Q 009045 466 ETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKV 537 (546)
Q Consensus 466 ~~~~~~l~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a 537 (546)
..|.++. +....+++++|.+|.. ..++++|+.+|+++.+ +.++.+.++||.+|.. ..++.+|..+|++|
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 6666655 5555556666655554 2256666666666554 2345555666666543 34556666666655
Q ss_pred HH
Q 009045 538 LM 539 (546)
Q Consensus 538 l~ 539 (546)
.+
T Consensus 385 ~~ 386 (452)
T 3e4b_A 385 KA 386 (452)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=4.5e-22 Score=186.71 Aligned_cols=220 Identities=11% Similarity=0.056 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHH-------cCCh-------HHHHHHHHhhHh-cCCCChHHHHHHHHHHHHc
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLK-------SGRL-------QSSISVLSSLLA-VDPNNCDCIGNLGIAYFQS 289 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 289 (546)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 799999999999999999999999999874 5886 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 290 GDMEQSAKCFQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
|++++|+..|++++++.|.+.. +|..++.++. +.|++++|+..|+++++..|....+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR---------------------RAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH---------------------HHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999987 8988888877 88999999999999999999998888
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHH
Q 009045 369 ANLANAYYL-TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 447 (546)
Q Consensus 369 ~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (546)
...+.+... .|++++|+..|+++++.+|++. .+
T Consensus 172 ~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------------------~~ 205 (308)
T 2ond_A 172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIP----------------------------------------------EY 205 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH----------------------------------------------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------------------------------------HH
Confidence 877766543 7999999999999999999764 34
Q ss_pred HHHHHHHHHhcccHHHHHHHHHhhccc------hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 009045 448 WAGFAAVQKTHHEVAAAFETEENELSK------MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 511 (546)
Q Consensus 448 ~~~l~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 511 (546)
|..++.++...|++++|+..|.+++.. .....|..++..+...|++++|...++++++..|++.
T Consensus 206 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 206 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 556666666667777776666665541 1234555666666666666666666666666666543
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=5.5e-22 Score=177.55 Aligned_cols=211 Identities=15% Similarity=0.094 Sum_probs=175.7
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
+.++..++.+|.+++..|++++|+..|+++++++| .+..+++.+|.++..+|++++|+..|+++++.+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45678999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHH
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-------HIWANLANAYYLTGDHRSSGKCLEK 390 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (546)
.++. ..|++++|+..|+++++++|+++ .++..+|.++...|++++|+..|++
T Consensus 84 ~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 84 AAYR---------------------DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHH---------------------HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 9888 89999999999999999999998 6799999999999999999999999
Q ss_pred HHhcCCC--ChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccH--HHHHH
Q 009045 391 AAKLEPN--CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEV--AAAFE 466 (546)
Q Consensus 391 al~~~p~--~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~ 466 (546)
+++++|+ +..++..++...+ ..|+. +++..
T Consensus 143 al~~~p~~~~~~~~~~l~~~~~----------------------------------------------~~~~~~~~~a~~ 176 (228)
T 4i17_A 143 ATDVTSKKWKTDALYSLGVLFY----------------------------------------------NNGADVLRKATP 176 (228)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHH----------------------------------------------HHHHHHHHHHGG
T ss_pred HHhcCCCcccHHHHHHHHHHHH----------------------------------------------HHHHHHHHHHHh
Confidence 9999998 7666666555433 22221 11110
Q ss_pred HHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 009045 467 TEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 523 (546)
Q Consensus 467 ~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 523 (546)
. .... .....+......+.+++|+.+|+++++++|++..++..++.+...
T Consensus 177 ~-----~~~~--~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 177 L-----ASSN--KEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp G-----TTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred c-----ccCC--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 0 0000 111122245567789999999999999999999999999887643
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=2.1e-23 Score=207.45 Aligned_cols=213 Identities=15% Similarity=0.058 Sum_probs=195.0
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQP-LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
.++...+.++....|.++.+++.+|.++...|++ ++|+.+|+++++++|+. ..++..+|.++.
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~------------~~a~~~lg~~~~---- 148 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL------------VEAWNQLGEVYW---- 148 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHH----
Confidence 5556677778888999999999999999999999 99999999999997654 345666666654
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---------CChHHHHHHHHhhHhcCCCChHHHHHHH
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCDCIGNLG 283 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la 283 (546)
..|++++|+.+|+++++.+|+ ..++..+|.++... |++++|+..|+++++++|++..+|..+|
T Consensus 149 -------~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 220 (474)
T 4abn_A 149 -------KKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILG 220 (474)
T ss_dssp -------HHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -------HcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 455669999999999999999 79999999999999 9999999999999999999999999999
Q ss_pred HHHHHc--------CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 284 IAYFQS--------GDMEQSAKCFQDLILKDQ---NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 284 ~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
.+|..+ |++++|+.+|+++++++| .+..++..+|.++. ..|++++|+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~---------------------~~g~~~~A~~ 279 (474)
T 4abn_A 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK---------------------YEESYGEALE 279 (474)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH---------------------HcCCHHHHHH
Confidence 999999 999999999999999999 99999999999988 8999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009045 353 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 353 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 391 (546)
.|+++++++|++..++..++.++..+|++++|+..+.+.
T Consensus 280 ~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 280 GFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999877543
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=3.3e-22 Score=187.60 Aligned_cols=224 Identities=15% Similarity=0.109 Sum_probs=197.6
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHH-HhcccchhccchhhHHHHH
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQR-------LGQP-------LKAVSSYEKAEE-ILLRCEADIARPELLSLVQ 198 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~ 198 (546)
.+|...|++++..+|.++.+|+.+|.++.. .|++ ++|+..|+++++ +.|++ ..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~------------~~ 100 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN------------ML 100 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC------------HH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc------------HH
Confidence 578889999999999999999999999874 5886 999999999999 66653 23
Q ss_pred HHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChH
Q 009045 199 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 277 (546)
Q Consensus 199 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 277 (546)
+|..++.++.. .|++++|+..|+++++..|.++. +|..+|.++.+.|++++|+..|+++++..|....
T Consensus 101 ~~~~~~~~~~~-----------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 169 (308)
T 2ond_A 101 LYFAYADYEES-----------RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp HHHHHHHHHHH-----------TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred HHHHHHHHHHh-----------cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence 45555655543 45569999999999999999887 9999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 278 CIGNLGIAYFQ-SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 278 ~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
++...+.+... .|++++|+..|+++++.+|++...|..++.++. ..|++++|+..|++
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~---------------------~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS---------------------HLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HCCCHHHHHHHHHH
Confidence 88877776543 799999999999999999999999999988887 88999999999999
Q ss_pred HHhc---CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 009045 357 ALKA---DP-KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 357 al~~---~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
++.. .| ....+|..++..+...|++++|...++++++..|++...
T Consensus 229 al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 9995 55 378899999999999999999999999999999986543
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=4.7e-23 Score=212.35 Aligned_cols=174 Identities=21% Similarity=0.286 Sum_probs=155.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHH
Q 009045 146 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 225 (546)
Q Consensus 146 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 225 (546)
..|++++++++||.+|..+|++++|+.+|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------------------------------------------- 38 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------------------------------------------- 38 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------------------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------------------------------
Confidence 46788888888888888888888888888777765
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 226 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
+|+++.+++++|.+|..+|++++|+..|+++++++|++..+++++|.++..+|++++|++.|++++++
T Consensus 39 ------------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l 106 (723)
T 4gyw_A 39 ------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106 (723)
T ss_dssp ------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 009045 306 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 385 (546)
Q Consensus 306 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 385 (546)
+|++..++.++|.++. ..|++++|+..|+++++++|+++.++.++|.++..+|++++|+
T Consensus 107 ~P~~~~a~~~Lg~~~~---------------------~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 107 NPAFADAHSNLASIHK---------------------DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp CTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred CCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 9999999999998887 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 009045 386 KCLEKAAKLEPN 397 (546)
Q Consensus 386 ~~~~~al~~~p~ 397 (546)
+.|++++++.|+
T Consensus 166 ~~~~kal~l~~~ 177 (723)
T 4gyw_A 166 ERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhChh
Confidence 999999887654
No 59
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=1.2e-22 Score=209.44 Aligned_cols=144 Identities=22% Similarity=0.259 Sum_probs=98.8
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
..|+++.+++++|.++..+|++++|+.+|+++++++|++..++.++|.+|..+|++++|+..|+++++++|++..++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35666777777777777777777777777777777777777777777777777777777777777777777777666666
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 396 (546)
|.++. ..|++++|++.|+++++++|++..++.++|.+|..+|++++|+..|+++++++|
T Consensus 84 g~~l~---------------------~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 84 GNTLK---------------------EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142 (723)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 66665 666677777777777766666666666666666666666666666666666666
Q ss_pred CChhH
Q 009045 397 NCMST 401 (546)
Q Consensus 397 ~~~~~ 401 (546)
++..+
T Consensus 143 ~~~~a 147 (723)
T 4gyw_A 143 DFPDA 147 (723)
T ss_dssp CCHHH
T ss_pred CChHH
Confidence 65433
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.90 E-value=5.8e-23 Score=201.55 Aligned_cols=225 Identities=14% Similarity=0.091 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccc
Q 009045 134 SREEKGLVHVARKMPKNA----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 209 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (546)
..|...|+++++.+|++. .+++.+|.+|...|++++|+.+|++++++.... .+......++..+|.++..
T Consensus 65 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~l~~~~~~ 138 (411)
T 4a1s_A 65 RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM------NDRLGEAKSSGNLGNTLKV 138 (411)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------cCchHHHHHHHHHHHHHHH
Confidence 777888899999999986 589999999999999999999999999984322 1223334566677776654
Q ss_pred cCCCccccccChhhHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCC-----------------hHHHHHHHH
Q 009045 210 SGDNSLDKELEPEELEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGR-----------------LQSSISVLS 266 (546)
Q Consensus 210 ~g~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 266 (546)
+ |++++|+..|+++++. .+....++..+|.++...|+ +++|+.+|+
T Consensus 139 ~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 139 M-----------GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp T-----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred C-----------CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 4 4559999999999887 56667789999999999999 999999999
Q ss_pred hhHhcC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhhCccccccccc
Q 009045 267 SLLAVD------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA------ALINYAALLLCKYGSVLAGAGAN 334 (546)
Q Consensus 267 ~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~~~~~~~ 334 (546)
+++.+. +....++..+|.+|...|++++|+.+|++++++.+.... ++..+|.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-------------- 273 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH-------------- 273 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH--------------
Confidence 988763 234568889999999999999999999999988764332 344444444
Q ss_pred cccchHHHhhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 009045 335 TGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 335 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 396 (546)
...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+
T Consensus 274 -------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 274 -------IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp -------HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 48899999999999998876643 67888899999999999999999998887654
No 61
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=5.4e-22 Score=195.96 Aligned_cols=324 Identities=13% Similarity=0.059 Sum_probs=229.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHH
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 234 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~a 234 (546)
..+|..+...|++++|+..|+++.+.. + ..+++.+|.++...|.. .++++|+..|+++
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g--~------------~~A~~~Lg~~y~~~g~~--------~d~~~A~~~~~~A 64 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG--Y------------SEAQVGLADIQVGTRDP--------AQIKQAEATYRAA 64 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--C------------CTGGGTCC------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC--C------------HHHHHHHHHHHHccCCC--------CCHHHHHHHHHHH
Confidence 568999999999999999999998752 1 13345566555433332 2449999999999
Q ss_pred HhcCcccHHHHHHHHHHHHHcC-----ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC
Q 009045 235 MQSDTRQAVVWNTLGLILLKSG-----RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK-DQN 308 (546)
Q Consensus 235 l~~~p~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~ 308 (546)
++. ++.+++.+|.++...+ ++++|+.+|++++.. +++.+++.||.+|...+...++...++..... .+.
T Consensus 65 ~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g 139 (452)
T 3e4b_A 65 ADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG 139 (452)
T ss_dssp ---------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT
T ss_pred HhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC
Confidence 976 6789999999777766 889999999999984 55669999999999887755544444333322 245
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG---DHRSSG 385 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~ 385 (546)
++.+++.+|.++..... -.+..+++..+++.+...+|. +++.+|.+|...| ++++|+
T Consensus 140 ~~~a~~~Lg~~y~~~~~-----------------~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGT-----------------YDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp CTTHHHHHHHHHHHHTC-----------------GGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-----------------cccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHH
Confidence 67788899988873211 223456666667776665555 8999999999999 999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-H--HhcccHH
Q 009045 386 KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV-Q--KTHHEVA 462 (546)
Q Consensus 386 ~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~ 462 (546)
..|+++.+..+.....++.++......... ......+...+.... +.++.+++.+|.+ + ...++++
T Consensus 200 ~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~----~~d~~~A~~~~~~aa-------~g~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 200 KQMEAGVSRGTVTAQRVDSVARVLGDATLG----TPDEKTAQALLEKIA-------PGYPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHTCGGGS----SCCHHHHHHHHHHHG-------GGSTHHHHHHHHHHHHSGGGCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCC----CCCHHHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCCCCHH
Confidence 999999999999888777777654322111 122333333343333 4567899999998 5 5788999
Q ss_pred HHHHHHHhhccchhhhHHhhHHHHHHHhc-----cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHH
Q 009045 463 AAFETEENELSKMEECAGAGESAFLDQAS-----AVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKC 533 (546)
Q Consensus 463 ~A~~~~~~~l~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~ 533 (546)
+|+..|.++.......+++++|.+|. .| ++++|+.+|+++. +.++.++++||.+|.. ..++++|+.+
T Consensus 269 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 269 QMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 99999999999889999999999998 66 9999999999998 8999999999999987 4499999999
Q ss_pred HHHHHHH
Q 009045 534 LEKVLMV 540 (546)
Q Consensus 534 ~~~al~~ 540 (546)
|+++.+.
T Consensus 345 ~~~Aa~~ 351 (452)
T 3e4b_A 345 LLTAARN 351 (452)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9999874
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=6.1e-22 Score=177.25 Aligned_cols=191 Identities=15% Similarity=0.103 Sum_probs=166.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHH
Q 009045 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 147 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
.+.++..++.+|.++...|++++|+..|+++++++|
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------------------------------------------- 38 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------------------------------------------- 38 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--------------------------------------------
Confidence 355678888899999988888888888888887632
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
+.+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..|+++++++
T Consensus 39 ------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 39 ------------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp ------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ------------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 14456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCh---
Q 009045 307 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDH--- 381 (546)
Q Consensus 307 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~--- 381 (546)
|++...+..++.++. .+|.++...|++++|+..|+++++++|+ ++.++..+|.+|...|+.
T Consensus 107 p~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~ 172 (228)
T 4i17_A 107 PGNATIEKLYAIYYL--------------KEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLR 172 (228)
T ss_dssp TTCHHHHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH--------------HHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999966555555554 2466666999999999999999999999 999999999999999998
Q ss_pred ------------------------HHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 382 ------------------------RSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 382 ------------------------~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
++|+.+|+++++++|++..+...++.
T Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 173 KATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 99999999999999999877765543
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=1.2e-22 Score=187.44 Aligned_cols=221 Identities=15% Similarity=0.104 Sum_probs=189.7
Q ss_pred chHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccc
Q 009045 133 SSREEKGLVHVARK----MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 208 (546)
Q Consensus 133 ~~~a~~~~~~~l~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (546)
..+|...|+++++. +|.++.+++.+|.++...|++++|+..|+++++.+|.. ..++..+|.++.
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~ 88 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------------PEVFNYLGIYLT 88 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc------------HHHHHHHHHHHH
Confidence 47788888888887 35678999999999999999999999999999997653 234556666554
Q ss_pred ccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH
Q 009045 209 SSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 288 (546)
Q Consensus 209 ~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 288 (546)
..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++++|++......++.. ..
T Consensus 89 -----------~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~ 156 (275)
T 1xnf_A 89 -----------QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ 156 (275)
T ss_dssp -----------HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH
T ss_pred -----------HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH
Confidence 445569999999999999999999999999999999999999999999999999998777666644 66
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC----C
Q 009045 289 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----A 364 (546)
Q Consensus 289 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~ 364 (546)
.|++++|+..+++++...|.+...+. ++.++. ..++.++|+..+++++...|. +
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~---------------------~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 157 KLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYL---------------------GNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp HHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHT---------------------TSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHH---------------------HhcCHHHHHHHHHHHhcccccccccc
Confidence 79999999999999999998866554 444444 677889999999999987764 3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
..++..+|.++...|++++|+.+|++++..+|++.
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 78999999999999999999999999999999764
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.90 E-value=4.7e-22 Score=193.00 Aligned_cols=320 Identities=11% Similarity=-0.031 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhc-cccccccCCCccccccChhhHHHHH-
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQ-CLLPESSGDNSLDKELEPEELEEIL- 228 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~A~- 228 (546)
......-...++..+++++|...++++.+..+..+ ..++.. .++.+ ..-+ .+..+++..+.
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~---~~~~~~----~y~~ll~~r~----------~~~~~~~~~~~~ 74 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQME---EDQDLH----LYYSLMEFRH----------NLMLEYLEPLEK 74 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSC---CCHHHH----HHHHHHHHHH----------HHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhc---cchHHH----HHHHHHHHHH----------HHHHhhcCcccc
Confidence 33444455567789999999999999877644321 122221 11110 0000 01112223333
Q ss_pred ----------HHHHHHHhcCcccHH------HHHHHHHHHHHcCChHHHHHHHHhhHhc---CC---CChHHHHHHHHHH
Q 009045 229 ----------SKLKESMQSDTRQAV------VWNTLGLILLKSGRLQSSISVLSSLLAV---DP---NNCDCIGNLGIAY 286 (546)
Q Consensus 229 ----------~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p---~~~~~~~~la~~~ 286 (546)
..++++-. .|.... .++.+|.++...|++++|+..|++++.+ .+ ..+.++..+|.+|
T Consensus 75 ~~~e~~~~~~~~~~~i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~ 153 (383)
T 3ulq_A 75 MRIEEQPRLSDLLLEIDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESY 153 (383)
T ss_dssp SCGGGSCCHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 34443322 222222 4555999999999999999999999987 22 3468899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC--
Q 009045 287 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-- 364 (546)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 364 (546)
..+|++++|+.++++++++.+.........+.++. .+|.++...|++++|+.+|++++++.+..
T Consensus 154 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 154 YYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS--------------LFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999986655431112222222 23555559999999999999999885542
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 009045 365 ----AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV 440 (546)
Q Consensus 365 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (546)
..++.++|.+|..+|++++|+.+|++++.+.+....
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~---------------------------------------- 259 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI---------------------------------------- 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc----------------------------------------
Confidence 358999999999999999999999999986322110
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccch-------hhhHHhhHHHHHHHhcc---HHHHHHHHHHHHHhCCCC
Q 009045 441 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM-------EECAGAGESAFLDQASA---VNVAKECLLAALKADPKA 510 (546)
Q Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~ 510 (546)
.+..+.++..+|.++...|++++|+..+.+++.-. ....+..+|.++...|+ +++|+.++++. ...|..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~ 338 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL 338 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH
Confidence 01224578899999999999999999999866521 12234578999999998 88888888877 334455
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
..++..+|.+|...|++++|..+|++++++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999998754
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.89 E-value=1.1e-22 Score=193.33 Aligned_cols=226 Identities=15% Similarity=0.110 Sum_probs=184.9
Q ss_pred hHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccc
Q 009045 134 SREEKGLVHVARKMPKN----AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 209 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (546)
.+|...|+++++.+|.+ ..++..+|.++...|++++|+.++++++++.+.. ++....+.++..++.++..
T Consensus 22 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 22 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------GDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc------cccHHHHHHHHHHHHHHHH
Confidence 78888899999999988 4788999999999999999999999999885432 1222334566677766644
Q ss_pred cCCCccccccChhhHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCC--------------------hHHHHH
Q 009045 210 SGDNSLDKELEPEELEEILSKLKESMQSDTRQ------AVVWNTLGLILLKSGR--------------------LQSSIS 263 (546)
Q Consensus 210 ~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~--------------------~~~A~~ 263 (546)
+ |++++|+..++++++..+.. ..++..+|.++...|+ +++|+.
T Consensus 96 ~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 96 L-----------GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp T-----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred c-----------cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 4 55699999999999876543 4489999999999999 999999
Q ss_pred HHHhhHhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhhCcccccc
Q 009045 264 VLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA------ALINYAALLLCKYGSVLAGA 331 (546)
Q Consensus 264 ~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~~~~ 331 (546)
.+++++.+ .+....++..+|.++...|++++|+.++++++++.+.... ++..+|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~------------ 232 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA------------ 232 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH------------
Confidence 99999876 2334568999999999999999999999999987654322 34444444
Q ss_pred ccccccchHHHhhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 332 GANTGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+...|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.++++++...+.
T Consensus 233 ---------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 233 ---------YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp ---------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 459999999999999999886654 778999999999999999999999999887553
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=5e-22 Score=186.81 Aligned_cols=248 Identities=14% Similarity=0.098 Sum_probs=191.3
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-- 306 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 306 (546)
.+|....++..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999999995 66778899999999999999999999999999873
Q ss_pred ------CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHH
Q 009045 307 ------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--------PKAAHIWANLA 372 (546)
Q Consensus 307 ------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 372 (546)
|....++..+|.++. ..|++++|+.+|++++++. |....++..+|
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYG---------------------KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHH---------------------HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 444555666666665 8999999999999999874 55678899999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 009045 373 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 452 (546)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 452 (546)
.++...|++++|+.+|++++...... .....+....++..+|
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------------------~~~~~~~~~~~~~~la 202 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTK--------------------------------------LGPDDPNVAKTKNNLA 202 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHT--------------------------------------SCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHH--------------------------------------hCCCCHHHHHHHHHHH
Confidence 99999999999999999999862110 0000111235688899
Q ss_pred HHHHhcccHHHHHHHHHhhccchh-----------------hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Q 009045 453 AVQKTHHEVAAAFETEENELSKME-----------------ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWA 515 (546)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~~l~~~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 515 (546)
.++...|++++|+..+.+.+...+ ...+..++..+...+.+.+|+..+++++...|..+.++.
T Consensus 203 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 282 (311)
T 3nf1_A 203 SCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLK 282 (311)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHH
Confidence 999999999999999998765221 122334555556667788888899999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 516 NLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 516 ~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
.+|.+|...|++++|+.+|++++++.+.
T Consensus 283 ~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 283 NLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998764
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=9e-21 Score=183.94 Aligned_cols=228 Identities=11% Similarity=0.097 Sum_probs=185.7
Q ss_pred cChhhHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-------hHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGIA 285 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~ 285 (546)
...|++++|+..|+++++. .+..+.+++.+|.+|...|++++|+.++++++++.+.. ..++..+|.+
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 4556679999999999987 33456899999999999999999999999999984433 4589999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQNHP------AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
|..+|++++|+.+|++++.+.+... .++.++|.++ ...|++++|+.+|+++++
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y---------------------~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK---------------------NSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---------------------HHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998865443 2444555554 499999999999999999
Q ss_pred -----cC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 009045 360 -----AD-PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASI 433 (546)
Q Consensus 360 -----~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 433 (546)
.+ |....++..+|.+|..+|++++|+.++++++.+.+.......
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------ 302 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY------------------------------ 302 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------------------------------
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH------------------------------
Confidence 46 778899999999999999999999999999987543221111
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHHhccc---HHHHHHHHHhhcc-chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC
Q 009045 434 LREGDPVQIEPPIAWAGFAAVQKTHHE---VAAAFETEENELS-KMEECAGAGESAFLDQASAVNVAKECLLAALKADP 508 (546)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~l~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 508 (546)
...+..++.++...|+ +.+|+..+.+... +.....+..+|.+|...|++++|+.+|++++++..
T Consensus 303 -----------~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 303 -----------LSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp -----------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 0124557888888888 8888888887533 33446778999999999999999999999998654
No 68
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.87 E-value=5.9e-20 Score=168.51 Aligned_cols=229 Identities=10% Similarity=0.024 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--ChHHHHHHHHhhHhcCCCChHHHHHHHHHH----HHc---CCHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSG--RLQSSISVLSSLLAVDPNNCDCIGNLGIAY----FQS---GDMEQS 295 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~~A 295 (546)
++|+..+.+++.++|++..+|+.++.++...| ++++++..+.+++..+|++..+|...+.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 68888888888889999999999999999888 999999999999999999999999999888 666 788999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHH--HHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN--VAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
+.++.++++.+|.+..+|...+.++. ..|.++ ++++++.++++.+|.+..+|..++.
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~---------------------~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ 188 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVD---------------------TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999998888877 677777 8999999999999999999999999
Q ss_pred HHHHcCC------hHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHH
Q 009045 374 AYYLTGD------HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 447 (546)
Q Consensus 374 ~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (546)
++...++ ++++++++++++..+|++..+|+.+..
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~---------------------------------------- 228 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLG---------------------------------------- 228 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH----------------------------------------
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHH----------------------------------------
Confidence 9888887 889999999999999988766554433
Q ss_pred HHHHHHHHHhcccHHHHH-HHHHhhcc-----chhhhHHhhHHHHHHHhccHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q 009045 448 WAGFAAVQKTHHEVAAAF-ETEENELS-----KMEECAGAGESAFLDQASAVNVAKECLLAALK-ADPKAAHIWANLANA 520 (546)
Q Consensus 448 ~~~l~~~~~~~~~~~~A~-~~~~~~l~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~ 520 (546)
++...|+...++ ....+.+. +....++..++.++.+.|+.++|+++|+.+.+ .+|-....|...+..
T Consensus 229 ------ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 229 ------IHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp ------HHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred ------HHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 333333322222 22222222 34556777888888889999999999999987 799999999887754
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=1.1e-20 Score=172.76 Aligned_cols=219 Identities=13% Similarity=0.023 Sum_probs=173.2
Q ss_pred HhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 009045 235 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-- 309 (546)
Q Consensus 235 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 309 (546)
....|.++..++.+|..++..|++++|+..|++++..+|++ ..+++.+|.+|+.+|++++|+..|+++++..|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34678899999999999999999999999999999999999 8999999999999999999999999999998865
Q ss_pred -HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH-----------------HHH
Q 009045 310 -PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW-----------------ANL 371 (546)
Q Consensus 310 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l 371 (546)
..+++.+|.++..... .++...|++++|+..|+++++.+|++..+. +.+
T Consensus 88 ~~~a~~~lg~~~~~~~~-------------~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~l 154 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSP-------------PYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHHHHHCC-------------CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcc-------------cccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777877761000 000018999999999999999999976655 888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 451 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 451 (546)
|.+|...|++++|+..|+++++..|++... +.++..+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------------------------------------------~~a~~~l 191 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWA-------------------------------------------DDALVGA 191 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTH-------------------------------------------HHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchH-------------------------------------------HHHHHHH
Confidence 999999999999999999999999985421 2334444
Q ss_pred HHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChH
Q 009045 452 AAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHR 528 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~ 528 (546)
|.++...|+... .....|++++|+..|+++++..|+++ .+...++.++...++++
T Consensus 192 ~~~~~~~g~~~~----------------------~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 192 MRAYIAYAEQSV----------------------RARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHTSC----------------------GGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccch----------------------hhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 444443322111 01245889999999999999999984 56677888888877776
Q ss_pred HHH
Q 009045 529 SSG 531 (546)
Q Consensus 529 ~A~ 531 (546)
++.
T Consensus 250 ~~~ 252 (261)
T 3qky_A 250 GDA 252 (261)
T ss_dssp TCT
T ss_pred hhh
Confidence 544
No 70
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.87 E-value=2.6e-21 Score=160.14 Aligned_cols=142 Identities=11% Similarity=0.189 Sum_probs=134.6
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
+...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+.+|+++++++|+++.+|..+|.+|...|++++|+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC-LLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
.|+++++++|+++.++..+|.++. ..|++++|... ++++++++|+++.++..++.++.
T Consensus 87 ~~~~al~~~p~~~~~~~~la~~~~---------------------~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 87 CYRRSVELNPTQKDLVLKIAELLC---------------------KNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH---------------------HHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 999999999999999999999888 88888887765 59999999999999999999998
Q ss_pred HcCC
Q 009045 377 LTGD 380 (546)
Q Consensus 377 ~~g~ 380 (546)
..|+
T Consensus 146 ~~G~ 149 (150)
T 4ga2_A 146 CEGE 149 (150)
T ss_dssp TCCC
T ss_pred HhCc
Confidence 8885
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=5.4e-21 Score=179.70 Aligned_cols=253 Identities=16% Similarity=0.143 Sum_probs=190.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHH
Q 009045 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 147 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
+|....++..+|.++...|++++|+.+|++++++.....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----------------------------------------- 61 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS----------------------------------------- 61 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc-----------------------------------------
Confidence 677889999999999999999999999999998631100
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
-...|....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.+
T Consensus 62 --------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 133 (311)
T 3nf1_A 62 --------GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL 133 (311)
T ss_dssp --------CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 0023556778999999999999999999999999987 355678999999999999999999999
Q ss_pred HHHHHhhC--------CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc--------CC
Q 009045 299 FQDLILKD--------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--------DP 362 (546)
Q Consensus 299 ~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p 362 (546)
|++++++. |....++..+|.++. ..|++++|+.+|+++++. .|
T Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 134 CKRALEIREKVLGKDHPDVAKQLNNLALLCQ---------------------NQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 99999874 444455666666665 999999999999999998 67
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---------hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 009045 363 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC---------MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASI 433 (546)
Q Consensus 363 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 433 (546)
....++..+|.+|...|++++|+.+|++++...+.. ...+...
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---------------------------- 244 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA---------------------------- 244 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH----------------------------
Confidence 778899999999999999999999999999865431 1111111
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 009045 434 LREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK 509 (546)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 509 (546)
..+...+..+...+.+.++...+..... +....++..+|.+|...|++++|+.+|++++++.|+
T Consensus 245 ------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 ------------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred ------------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122233333344444555555555443 455577889999999999999999999999998775
No 72
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.87 E-value=4.9e-21 Score=177.99 Aligned_cols=204 Identities=11% Similarity=0.025 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccccc
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRL---GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 210 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (546)
.+|++.+.++-+.-+.....+. ++.. +++++|+..|+++..+
T Consensus 2 ~~a~~~~~~a~k~~~~~~~~~~-----~~~~~~~~~~~~A~~~~~~a~~~------------------------------ 46 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVPSSGFMK-----LFSGSDSYKFEEAADLCVQAATI------------------------------ 46 (292)
T ss_dssp CCHHHHHHHHHHHSSCCCTHHH-----HHSCCSHHHHHHHHHHHHHHHHH------------------------------
T ss_pred CcHHHHHHHHHHHhCcCCCcch-----hcCCCCCccHHHHHHHHHHHHHH------------------------------
Confidence 3466677777777665322221 1122 2488888888887654
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHH
Q 009045 211 GDNSLDKELEPEELEEILSKLKESMQSDT------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDC 278 (546)
Q Consensus 211 g~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 278 (546)
+...|++++|+..|++++++.+ ..+.++.++|.+|..+|++++|+.+|++++.+.+.. ..+
T Consensus 47 -------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 47 -------YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp -------HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334666888888888887643 236789999999999999999999999999987643 468
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 279 IGNLGIAYFQS-GDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 279 ~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
+.++|.+|... |++++|+.+|++++++.|.. ..++..+|.++. ..|++++|+
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~A~ 178 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA---------------------LDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH---------------------HhCCHHHHH
Confidence 99999999996 99999999999999998754 234555555555 999999999
Q ss_pred HHHHHHHhcCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 352 ECLLAALKADPKAAH-------IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 352 ~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
.+|++++++.|++.. ++..+|.++..+|++++|+.+|++++.++|+...
T Consensus 179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 999999999887543 6789999999999999999999999999998654
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=2.5e-21 Score=200.93 Aligned_cols=203 Identities=10% Similarity=-0.022 Sum_probs=166.9
Q ss_pred hcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhH--------hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 236 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL--------AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 236 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
..+|+++.+++..| ...|++++|+..|++++ +.+|++..+++.+|.++..+|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45788888888777 78899999999999999 89999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 009045 308 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387 (546)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 387 (546)
++..+++.+|.++. ..|++++|+..|+++++++|++..++.++|.++..+|++++ +..
T Consensus 465 ~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~ 522 (681)
T 2pzi_A 465 WRWRLVWYRAVAEL---------------------LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKF 522 (681)
T ss_dssp CCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred chHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHH
Confidence 99999999999988 89999999999999999999999999999999999999999 999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHH
Q 009045 388 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 467 (546)
Q Consensus 388 ~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 467 (546)
|+++++++|++..+++++
T Consensus 523 ~~~al~~~P~~~~a~~~l-------------------------------------------------------------- 540 (681)
T 2pzi_A 523 YQTVWSTNDGVISAAFGL-------------------------------------------------------------- 540 (681)
T ss_dssp HHHHHHHCTTCHHHHHHH--------------------------------------------------------------
T ss_pred HHHHHHhCCchHHHHHHH--------------------------------------------------------------
Confidence 999999999876444333
Q ss_pred HHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHh
Q 009045 468 EENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS-GKCLEKVLMVY 541 (546)
Q Consensus 468 ~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~ 541 (546)
|.++...|++++|+..|+++++++|++..+++++|.++...|+.+++ ...+++|++.+
T Consensus 541 ----------------g~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l 599 (681)
T 2pzi_A 541 ----------------ARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV 599 (681)
T ss_dssp ----------------HHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred ----------------HHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 33566677777777777777777777777777777777665553333 44444444443
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.86 E-value=5.4e-20 Score=178.01 Aligned_cols=243 Identities=16% Similarity=0.073 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
.++.+|..+...|++++|+..|++++.+.+ ..+.+++.+|.+|..+|++++|+.++++++.+.+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 677899999999999999999999998732 24678999999999999999999999999988665332111222
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 391 (546)
.++. .+|.++...|++++|+.+|++++++.+. ...++.++|.+|..+|++++|+.+|+++
T Consensus 183 ~~~~--------------~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 183 QSLF--------------VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2222 2355555999999999999999987431 3568899999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhh
Q 009045 392 AKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENE 471 (546)
Q Consensus 392 l~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 471 (546)
+.+..... .+..+.++..+|.++...|++++|+..+.++
T Consensus 249 l~~~~~~~-----------------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 249 AKVSREKV-----------------------------------------PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHC-----------------------------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhC-----------------------------------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 98532110 0112356888999999999999999999986
Q ss_pred ccc-------hhhhHHhhHHHHHHHhcc---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 472 LSK-------MEECAGAGESAFLDQASA---VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 472 l~~-------~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
+.- .....+..++.++...++ +.+|+.++++. ...|....++..+|.+|...|++++|..+|++++++.
T Consensus 288 l~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 288 LDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 542 122334567777888888 88888888873 2334456788899999999999999999999999875
Q ss_pred c
Q 009045 542 C 542 (546)
Q Consensus 542 ~ 542 (546)
.
T Consensus 367 ~ 367 (378)
T 3q15_A 367 E 367 (378)
T ss_dssp H
T ss_pred H
Confidence 3
No 75
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.86 E-value=1.1e-19 Score=166.72 Aligned_cols=232 Identities=12% Similarity=0.068 Sum_probs=203.0
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccc----
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLG--QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP---- 207 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---- 207 (546)
.+|.+++.++|.++|++..+|+.++.++...| ++++++.++.+++..+|++. .+|+..+.++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y------------~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY------------QIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH------------HHHHHHHHHHHHHH
Confidence 68889999999999999999999999999999 99999999999999988762 3344444444
Q ss_pred cccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChH--HHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ--SSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 208 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
..++. .+++++++.++.++++.+|.+..+|..++.++...|.++ ++++++.++++.+|.|..+|...+.+
T Consensus 118 ~~l~~--------~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 118 ELNNN--------DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHTTT--------CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred Hhccc--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 22311 144699999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcC-HHHHHHHHHHHH
Q 009045 286 YFQSGD------MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAAL 358 (546)
Q Consensus 286 ~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al 358 (546)
....|. ++++++++++++..+|.+..+|..++.++. ..|+ .+....++.+++
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~---------------------~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHE---------------------RFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH---------------------HTTCCGGGGHHHHHTTE
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHH---------------------hcCCChHHHHHHHHHHH
Confidence 999998 999999999999999999999999998887 5555 444556777777
Q ss_pred hcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCChhHHHHHH
Q 009045 359 KAD---PKAAHIWANLANAYYLTGDHRSSGKCLEKAAK-LEPNCMSTRYAVA 406 (546)
Q Consensus 359 ~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~ 406 (546)
+++ |.++.++..++.+|...|+.++|+++|+.+.+ .+|-....|...+
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 766 88999999999999999999999999999997 7998877776543
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=2.7e-20 Score=170.19 Aligned_cols=201 Identities=13% Similarity=0.071 Sum_probs=154.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhh
Q 009045 144 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEE 223 (546)
Q Consensus 144 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 223 (546)
...+|.++..++.+|..+...|++++|+..|+++++..|.+
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--------------------------------------- 48 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH--------------------------------------- 48 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS---------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---------------------------------------
Confidence 34678889999999999999999988888888887764432
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHH--------cCCH
Q 009045 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQ--------SGDM 292 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~--------~g~~ 292 (546)
|..+.+++.+|.++...|++++|+..|+++++..|++ ..+++.+|.++.. .|++
T Consensus 49 ---------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~ 113 (261)
T 3qky_A 49 ---------------EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDT 113 (261)
T ss_dssp ---------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHH
T ss_pred ---------------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhH
Confidence 1126678888888888888888888888888887754 5678888888888 8888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC---CHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWA 369 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~ 369 (546)
++|+..|+++++.+|++..+...+..+...... ....++.+|.++...|++++|+..|+++++..|+ ...+++
T Consensus 114 ~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~ 189 (261)
T 3qky_A 114 RKAIEAFQLFIDRYPNHELVDDATQKIRELRAK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALV 189 (261)
T ss_dssp HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 888888888888888876655333222111000 0112234566667999999999999999999998 577999
Q ss_pred HHHHHHHHc----------CChHHHHHHHHHHHhcCCCChhHH
Q 009045 370 NLANAYYLT----------GDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 370 ~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
.+|.+|..+ |++++|+..|+++++.+|+++.+.
T Consensus 190 ~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 190 GAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 999999987 899999999999999999987544
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.85 E-value=2.6e-19 Score=173.03 Aligned_cols=281 Identities=14% Similarity=0.006 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
..++..+|.++...|++++|+..+++++...|... +
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----~--------------------------------------- 49 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-----F--------------------------------------- 49 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-----H---------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc-----h---------------------------------------
Confidence 35567777888888888888888888877533110 0
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.....++..+|.++...|++++|+..+++++.+.+... .++..+|.++...|++++|+..+++++.
T Consensus 50 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 121 (373)
T 1hz4_A 50 --------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 121 (373)
T ss_dssp --------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00124677889999999999999999999998755432 3478899999999999999999999998
Q ss_pred hCC--------CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-----CHHHHHHH
Q 009045 305 KDQ--------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-----AAHIWANL 371 (546)
Q Consensus 305 ~~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l 371 (546)
..+ .....+..+|.++. ..|++++|+.++++++...+. ...++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 122 LINEQHLEQLPMHEFLVRIRAQLLW---------------------AWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHTTCTTSTHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHhccccCcHHHHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 753 22334555666555 899999999999999998775 35678899
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 451 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 451 (546)
|.++...|++++|..++++++.+.+.......... ......
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~---------------------------------------~~~~~~ 221 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS---------------------------------------NANKVR 221 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH---------------------------------------HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH---------------------------------------HHHHHH
Confidence 99999999999999999999887443211000000 012234
Q ss_pred HHHHHhcccHHHHHHHHHhhccchh------hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHH
Q 009045 452 AAVQKTHHEVAAAFETEENELSKME------ECAGAGESAFLDQASAVNVAKECLLAALKADPK------AAHIWANLAN 519 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~ 519 (546)
+.++...|++++|...+.+.+...+ ...+..+|.++...|++++|+..+++++...+. ...++..+|.
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~ 301 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 301 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 4557788999999999988665332 124568899999999999999999999876442 2357888999
Q ss_pred HHHhcCChHHHHHHHHHHHHHhcc
Q 009045 520 AYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 520 ~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
++...|++++|...|++++.+...
T Consensus 302 ~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 302 LYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988753
No 78
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=7.3e-20 Score=160.81 Aligned_cols=189 Identities=12% Similarity=0.075 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+++.++..|..+...|++++|+..|+++++.+|++. .+++..+. ..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~~~~-----~~----------------- 48 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT------------EMYYWTNV-----DK----------------- 48 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH------------HHHHHHHS-----CT-----------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHhhh-----cc-----------------
Confidence 567788899999999999999999999999865431 11111110 00
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 309 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (546)
.....+...+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++
T Consensus 49 -------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 49 -------NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp -------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred -------hhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 0111234556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009045 310 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 389 (546)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 389 (546)
..+++.+|.++... ..+....+...+.+++...|. ..+++.+|.++...|++++|+.+|+
T Consensus 122 ~~a~~~lg~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 122 LAANIFLGNYYYLT-------------------AEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------------hHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998732 233466778888887754332 3467889999999999999999999
Q ss_pred HHHhcCCCCh
Q 009045 390 KAAKLEPNCM 399 (546)
Q Consensus 390 ~al~~~p~~~ 399 (546)
++++++|+..
T Consensus 182 ~al~l~P~~~ 191 (208)
T 3urz_A 182 KVILRFPSTE 191 (208)
T ss_dssp HHTTTSCCHH
T ss_pred HHHHhCCCHH
Confidence 9999999753
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.84 E-value=3.7e-21 Score=178.03 Aligned_cols=237 Identities=14% Similarity=0.159 Sum_probs=170.7
Q ss_pred ChhhHHHHHHHHHHHHh--------cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------CCCChHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQ--------SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLG 283 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la 283 (546)
..|++++|+.+|+++++ ..|....++..+|.++...|++++|+.+|++++.+ .|....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34455666666666665 23777889999999999999999999999999987 356678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHH
Q 009045 284 IAYFQSGDMEQSAKCFQDLILK--------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 355 (546)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 355 (546)
.+|...|++++|+.+|++++.+ +|....++..+|.++. ..|++++|+.+|+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~ 151 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ---------------------NQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------TTTCHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHH
Confidence 9999999999999999999988 3555666777777776 8999999999999
Q ss_pred HHHhc--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHH
Q 009045 356 AALKA--------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG 427 (546)
Q Consensus 356 ~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 427 (546)
+++++ .|....++..+|.++..+|++++|+.+|++++++.+....
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--------------------------- 204 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF--------------------------- 204 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS---------------------------
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---------------------------
Confidence 99998 7777889999999999999999999999999987442110
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC
Q 009045 428 NEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 507 (546)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 507 (546)
....+.....|..++..+...+... ....+..+...++......
T Consensus 205 ----------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 205 ----------GSVNGDNKPIWMHAEEREESKDKRR--------------------------DSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp ----------SSCCSSCCCHHHHHHHHHHTTCCCC--------------------------C------------CCCCCC
T ss_pred ----------CCcchhHHHHHHHHHHHHhcCCchh--------------------------HHHHHHHHHHHHHhcCCCC
Confidence 0001112223333333332222111 1112344444444444445
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 508 PKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 508 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
|....++..+|.+|...|++++|+.+|++++++
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666778888888888888888888888888765
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.84 E-value=5.7e-20 Score=161.47 Aligned_cols=180 Identities=14% Similarity=0.102 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN----------------LGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.+..++..|..++..|++++|+..|++++..+|+++.+++. +|.+|...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35567777888888888888888888888888887777777 45555555555555555555555
Q ss_pred hCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 384 (546)
++|++..++..+|.++. ..|++++|+.+|+++++++|+++.++..+|.+|...|+.+
T Consensus 83 ~~p~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~-- 139 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQV---------------------CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE-- 139 (208)
T ss_dssp HCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH--
T ss_pred HCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH--
Confidence 55544444444444444 4444444554444444444444444444444444333211
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHH
Q 009045 385 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 464 (546)
Q Consensus 385 ~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 464 (546)
...+
T Consensus 140 ----------------------------------------------------------------------------~~~~ 143 (208)
T 3urz_A 140 ----------------------------------------------------------------------------KKKL 143 (208)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1222
Q ss_pred HHHHHhhccchh-hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009045 465 FETEENELSKME-ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 520 (546)
Q Consensus 465 ~~~~~~~l~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 520 (546)
...+.+.+.+.+ ..+++.+|.++...|++++|+.+|+++++++|+. .+...+..+
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 144 ETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 222222222222 1345566778888999999999999999999974 344445554
No 81
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=9.8e-18 Score=175.94 Aligned_cols=367 Identities=12% Similarity=0.036 Sum_probs=261.1
Q ss_pred cchhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCCCchHHHHHHHHHHHhCCCCHHHHHHH---------HH
Q 009045 89 VAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKGLVHVARKMPKNAHAHFLL---------GL 159 (546)
Q Consensus 89 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~a~~~~~~~l~~~p~~~~~~~~l---------g~ 159 (546)
......+.+...|....++ ..+++++ ..|......... .. .+..-+++.++....-+... |.
T Consensus 987 eVs~~vKaf~~aglp~Eai-eLLEKiv-l~~s~fs~n~~L-----qn--lLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~ 1057 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELI-ELLEKIV-LDNSVFSEHRNL-----QN--LLILTAIKADRTRVMEYINRLDNYDAPDIAN 1057 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHH-HHHHHHH-cCCCcccccHHH-----HH--HHHHHHHHhChhhHHHHHHHhhhccHHHHHH
Confidence 3344566677777777777 8888888 444311111111 11 14445566666665555554 99
Q ss_pred HHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCc
Q 009045 160 MYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT 239 (546)
Q Consensus 160 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p 239 (546)
++...|.+++|...|+++-... . ....+ +...+++++|+++++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~~~~----------~---A~~VL-----------------ie~i~nldrAiE~Aerv----- 1102 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDVNT----------S---AVQVL-----------------IEHIGNLDRAYEFAERC----- 1102 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCCHH----------H---HHHHH-----------------HHHHhhHHHHHHHHHhc-----
Confidence 9999999999999999974220 0 01111 12456779999998866
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
+.+.+|+.+|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++. .....+|.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHH
Confidence 55889999999999999999999999886 789999999999999999999999999999887542 112234444
Q ss_pred HHHhhCccc-------cccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 320 LLCKYGSVL-------AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 320 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
|.....-.. .....+..+|..+...|+|++|+.+|.++ ..|..+|.+|..+|++++|++.++++
T Consensus 1177 YAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 443311000 01234556899999999999999999995 47899999999999999999999998
Q ss_pred hcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc
Q 009045 393 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 472 (546)
Q Consensus 393 ~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 472 (546)
.+..+|...+..++.... +..+.... .. ....+..+..++..|...|.+++|+..++.++
T Consensus 1248 ----~n~~aWkev~~acve~~E--------f~LA~~cg-------l~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKE--------FRLAQMCG-------LH-IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhH--------HHHHHHHH-------Hh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 345666655554432111 11111100 00 12345567788999999999999999999876
Q ss_pred cch--hhhHHhhHHHHHH--HhccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCChHHHHHHH
Q 009045 473 SKM--EECAGAGESAFLD--QASAVNVAKECLLAALKADP-----KAAHIWANLANAYYLTGDHRSSGKCL 534 (546)
Q Consensus 473 ~~~--~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~ 534 (546)
.-. ....+..+|.+|. +-++..+++++|...+.+.| +++..|..+..+|.+-|+++.|+..+
T Consensus 1308 ~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1308 GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 543 3345555666665 56778999999999888877 78889999999999999999999433
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=4.2e-20 Score=171.64 Aligned_cols=207 Identities=15% Similarity=0.085 Sum_probs=164.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhc
Q 009045 158 GLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS 237 (546)
Q Consensus 158 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~ 237 (546)
|.+|...|++++|+.+|++++++.+.. .+....+.++.++|.++..+|+ +++|+.+|++++++
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~a~~~~~lg~~~~~~g~-----------~~~A~~~~~~Al~l 106 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKA------GNEDEAGNTYVEAYKCFKSGGN-----------SVNAVDSLENAIQI 106 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHH
Confidence 778999999999999999999986542 1222345677778877655554 59999999999998
Q ss_pred Cccc------HHHHHHHHHHHHHc-CChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 238 DTRQ------AVVWNTLGLILLKS-GRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 238 ~p~~------~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.+.. ..++.++|.+|... |++++|+.+|++++++.|.. ..++..+|.++..+|++++|+.+|++++.
T Consensus 107 ~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7753 56899999999996 99999999999999998754 46789999999999999999999999999
Q ss_pred hCCCCHH-------HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH-----HHHHHH
Q 009045 305 KDQNHPA-------ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH-----IWANLA 372 (546)
Q Consensus 305 ~~p~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~ 372 (546)
+.|++.. .+..+|.++. ..|++++|+.+|+++++++|.... .+..++
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~ 245 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQL---------------------AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLI 245 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHGGGCC---------HHHHHHHH
T ss_pred HHhcCCcccHHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 9987654 3455555555 899999999999999999998654 344566
Q ss_pred HHHH--HcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 373 NAYY--LTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 373 ~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
..+. ..+++++|+..|++++.++|.....+
T Consensus 246 ~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 6664 46789999999999999988665443
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.83 E-value=8.3e-19 Score=169.69 Aligned_cols=242 Identities=14% Similarity=0.114 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHH
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 232 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~ 232 (546)
.++.+|..+...|++++|+.+|++++++.+...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------------------------- 135 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS----------------------------------------------- 135 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC-----------------------------------------------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC-----------------------------------------------
Confidence 567788888999999999999999887632110
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 233 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 233 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
..+..+.+++.+|.+|...|++++|+.++++++.+.+. ...++..+|.+|..+|++++|+.+|++++.+
T Consensus 136 ----~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 211 (378)
T 3q15_A 136 ----DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211 (378)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 01234668889999999999999999999999987442 2457889999999999999999999999987
Q ss_pred CCCC------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHH
Q 009045 306 DQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK-----ADPKAAHIWANLANA 374 (546)
Q Consensus 306 ~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~ 374 (546)
.+.. ..++.++|. ++...|++++|+.+|+++++ .+|....++..+|.+
T Consensus 212 ~~~~~~~~~~~~~~~~lg~---------------------~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 212 AMDIQNDRFIAISLLNIAN---------------------SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH---------------------HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH---------------------HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 5421 123444444 44599999999999999999 788889999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
+..+|++++|+.++++++.+.+......+ ...+..++.+
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------------------------~~~~~~l~~l 309 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFY-----------------------------------------KELFLFLQAV 309 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCH-----------------------------------------HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHH-----------------------------------------HHHHHHHHHH
Confidence 99999999999999999998765321111 1123445556
Q ss_pred HHhccc---HHHHHHHHHhhcc-chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC
Q 009045 455 QKTHHE---VAAAFETEENELS-KMEECAGAGESAFLDQASAVNVAKECLLAALKAD 507 (546)
Q Consensus 455 ~~~~~~---~~~A~~~~~~~l~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 507 (546)
+...++ +.+|+..+.+... +.....+..+|.+|...|++++|+.+|+++++..
T Consensus 310 y~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 666666 7788887776332 3344567789999999999999999999998753
No 84
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=1.4e-20 Score=195.28 Aligned_cols=188 Identities=14% Similarity=0.062 Sum_probs=164.3
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--------HHhcccchhccchhhHHHHHHHhhccccccccCCCccc
Q 009045 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAE--------EILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLD 216 (546)
Q Consensus 145 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 216 (546)
..+|+++.+++..| ...|++++|+..|++++ +.+|++ ..++..+|.++
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~------------~~~~~~~a~~~--------- 443 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSES------------VELPLMEVRAL--------- 443 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTC------------SHHHHHHHHHH---------
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccc------------hhHHHHHHHHH---------
Confidence 35788888888877 78999999999999999 665543 23445555554
Q ss_pred cccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 217 KELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 217 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
+..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..+++++|.++..+|++++ +
T Consensus 444 --~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~ 520 (681)
T 2pzi_A 444 --LDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-H 520 (681)
T ss_dssp --HHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-T
T ss_pred --HhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-H
Confidence 4556669999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
..|+++++++|++..+++++|.++. ..|++++|+..|+++++++|++..++.++|.++.
T Consensus 521 ~~~~~al~~~P~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 521 KFYQTVWSTNDGVISAAFGLARARS---------------------AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLL 579 (681)
T ss_dssp CHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHH---------------------HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHH
Confidence 9999999999999999999999888 8999999999999999999999999999999998
Q ss_pred HcCC
Q 009045 377 LTGD 380 (546)
Q Consensus 377 ~~g~ 380 (546)
..++
T Consensus 580 ~~~~ 583 (681)
T 2pzi_A 580 SGRS 583 (681)
T ss_dssp ----
T ss_pred ccCC
Confidence 8666
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.83 E-value=8.5e-19 Score=156.15 Aligned_cols=206 Identities=13% Similarity=0.086 Sum_probs=158.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALI 314 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 314 (546)
.+..++.+|..++..|++++|+..|++++...|++. .+++.+|.+|...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467889999999999999999999999999998764 68999999999999999999999999999999875 677
Q ss_pred HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
.+|.++. ..+. .....+..++.++...|++++|+..|+++++.
T Consensus 83 ~~g~~~~---------------------~~~~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 83 MRGLTNM---------------------ALDD----------------SALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHH---------------------HHHC------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH---------------------hhhh----------------hhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 7777776 3221 11223456777888899999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc
Q 009045 395 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 474 (546)
Q Consensus 395 ~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 474 (546)
+|++..+...... ++.+..
T Consensus 126 ~P~~~~a~~a~~~-------------------------------------------l~~~~~------------------ 144 (225)
T 2yhc_A 126 YPNSQYTTDATKR-------------------------------------------LVFLKD------------------ 144 (225)
T ss_dssp CTTCTTHHHHHHH-------------------------------------------HHHHHH------------------
T ss_pred CcCChhHHHHHHH-------------------------------------------HHHHHH------------------
Confidence 9998765432211 011100
Q ss_pred hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 475 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
......+.+|.+|...|++++|+..|+++++..|+++ .+++.+|.+|..+|++++|+..++++....+.+
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 0011234567799999999999999999999999985 789999999999999999999999888776654
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.83 E-value=2.2e-20 Score=154.56 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=128.0
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCc
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 326 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 326 (546)
.||.++...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+.+|+++++++|+++.++..+|.++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~----- 76 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE----- 76 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHhcCCCChhHHHHH
Q 009045 327 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC-LEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l 405 (546)
..|++++|+.+|+++++++|+++.++..+|.+|...|++++|... ++++++++|+++.++...
T Consensus 77 ----------------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 77 ----------------LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp ----------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred ----------------HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 899999999999999999999999999999999999999887765 599999999999887655
Q ss_pred HH
Q 009045 406 AV 407 (546)
Q Consensus 406 ~~ 407 (546)
+.
T Consensus 141 ~~ 142 (150)
T 4ga2_A 141 EQ 142 (150)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.83 E-value=1.2e-18 Score=149.91 Aligned_cols=138 Identities=19% Similarity=0.274 Sum_probs=115.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
....+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..++++++..|.+...+..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888888888888888888888888888888887777777
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
. ..|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|++.
T Consensus 87 ~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 144 (186)
T 3as5_A 87 V---------------------QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG 144 (186)
T ss_dssp H---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred H---------------------HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch
Confidence 6 778888888888888888888888888888888888888888888888888877654
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=7.1e-20 Score=169.37 Aligned_cols=238 Identities=14% Similarity=0.152 Sum_probs=177.2
Q ss_pred cccCCCCchHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHH
Q 009045 126 SGLGTSSSSREEKGLVHVARK--------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLV 197 (546)
Q Consensus 126 ~~~g~~~~~~a~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 197 (546)
...|.. .+|+..|+++++. +|..+.++..+|.++...|++++|+.+|++++++..... .++.....
T Consensus 12 ~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~ 85 (283)
T 3edt_B 12 SGLVPR--GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL----GKDHPAVA 85 (283)
T ss_dssp -CCSCS--SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CTTCHHHH
T ss_pred CCCCCH--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc----CCcchHHH
Confidence 344555 7777777777763 366789999999999999999999999999999842110 01122334
Q ss_pred HHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhH
Q 009045 198 QIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 269 (546)
Q Consensus 198 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 269 (546)
.++..+|.++. ..|++++|+.+|++++.. +|....++..+|.++...|++++|+.+|++++
T Consensus 86 ~~~~~l~~~~~-----------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 86 ATLNNLAVLYG-----------KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHHHHHHH-----------TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56667777654 455669999999999987 57888999999999999999999999999999
Q ss_pred hc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHhhCccccccc
Q 009045 270 AV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK---------DQNHPAALINYAALLLCKYGSVLAGAG 332 (546)
Q Consensus 270 ~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~~~~~~~~~~ 332 (546)
.+ .|....++..+|.++..+|++++|+.+|++++++ .+.....+..++......
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 225 (283)
T 3edt_B 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK--------- 225 (283)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT---------
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC---------
Confidence 98 6777889999999999999999999999999987 344455565555554411
Q ss_pred cccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 009045 333 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 395 (546)
Q Consensus 333 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 395 (546)
........+..+...++......|....++..+|.+|..+|++++|+.+|+++++..
T Consensus 226 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 226 ------DKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ------CCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ------CchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 111123345566666665555567778899999999999999999999999998753
No 89
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=4.3e-19 Score=152.78 Aligned_cols=161 Identities=17% Similarity=0.228 Sum_probs=153.9
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..
T Consensus 19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 98 (186)
T 3as5_A 19 AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPL 98 (186)
T ss_dssp HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 378 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 378 (546)
+++++...|.+...+..+|.++. ..|++++|+.+++++++..|.+..++..+|.++...
T Consensus 99 ~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 99 LIKVAEANPINFNVRFRLGVALD---------------------NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHhHHHHHHHHHHHH---------------------HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc
Confidence 99999999999999998888887 899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCChh
Q 009045 379 GDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 379 g~~~~A~~~~~~al~~~p~~~~ 400 (546)
|++++|+.+++++++..|++..
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 158 GRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp TCHHHHHHHHHHHHHHHHCCCG
T ss_pred CCHHHHHHHHHHHHHcCCCchh
Confidence 9999999999999999887753
No 90
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.82 E-value=3.6e-19 Score=142.13 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=106.2
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 009045 233 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 312 (546)
Q Consensus 233 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 312 (546)
++..++|+.+..+..+|..+++.|+|++|+..|+++++++|.++.+|.++|.+|..+|++++|+..|+++++++|++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34457888888999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009045 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375 (546)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 375 (546)
++.+|.++. ..|++++|+..|+++++++|++..++..++.++
T Consensus 84 ~~~lg~~~~---------------------~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLV---------------------AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 888888887 888899999999999999999988888888764
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.82 E-value=2.2e-18 Score=153.42 Aligned_cols=211 Identities=11% Similarity=0.006 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
++..++.+|..+...|++++|+..|+++++..|.+.. ...+++.+|.++ +..|++++|+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~---------~~~a~~~lg~~~-----------~~~~~~~~A~~ 62 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY---------SQQVQLDLIYAY-----------YKNADLPLAQA 62 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT---------HHHHHHHHHHHH-----------HHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHH-----------HhcCCHHHHHH
Confidence 4677888888888888888888888888887654310 012222333332 22233355555
Q ss_pred HHHHHHhcCcccHH---HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 230 KLKESMQSDTRQAV---VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 230 ~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
.|+++++.+|++.. +++.+|.++...|.. ....+..++..+...|++++|+..|+++++..
T Consensus 63 ~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 63 AIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 55555555554432 444555554443211 01112223333334678888888888888888
Q ss_pred CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChHH
Q 009045 307 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRS 383 (546)
Q Consensus 307 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~ 383 (546)
|++..++..+..+..... ........+|.++...|++++|+..|+++++..|+++ .++..+|.+|..+|++++
T Consensus 127 P~~~~a~~a~~~l~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 127 PNSQYTTDATKRLVFLKD----RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp TTCTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCChhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 887755433222111000 0011223467788899999999999999999999976 689999999999999999
Q ss_pred HHHHHHHHHhcCCCChh
Q 009045 384 SGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 384 A~~~~~~al~~~p~~~~ 400 (546)
|+..++++....|++..
T Consensus 203 A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 203 AEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHhhCCCchh
Confidence 99999999999887653
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.81 E-value=4.8e-17 Score=157.05 Aligned_cols=298 Identities=13% Similarity=0.063 Sum_probs=217.0
Q ss_pred hHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccc
Q 009045 134 SREEKGLVHVARKMPKNA-----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 208 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (546)
..+...+++++...|.+. .++..+|.++...|++++|+..+++++.+.+.. ++....+.++..++.++.
T Consensus 31 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH------DVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc------CcHHHHHHHHHHHHHHHH
Confidence 677778888888776543 367899999999999999999999999987653 222233445556666654
Q ss_pred ccCCCccccccChhhHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-----
Q 009045 209 SSGDNSLDKELEPEELEEILSKLKESMQSD--------TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----- 275 (546)
Q Consensus 209 ~~g~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----- 275 (546)
..|++++|+..++++++.. |....++..+|.++...|++++|+..+++++.+.+..
T Consensus 105 -----------~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 105 -----------AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp -----------HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred -----------HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 4555699999999999865 3456678889999999999999999999999987653
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH
Q 009045 276 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 353 (546)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 353 (546)
..++..+|.++...|++++|...+++++.+.+. ....+....... .+.++...|++++|...
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV----------------RVIYWQMTGDKAAAANW 237 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH----------------HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH----------------HHHHHHHCCCHHHHHHH
Confidence 457889999999999999999999999987432 222222110000 12234489999999999
Q ss_pred HHHHHhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 009045 354 LLAALKADPKA----AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNE 429 (546)
Q Consensus 354 ~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 429 (546)
+++++...+.. ...+..+|.++...|++++|...+++++...+......
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~--------------------------- 290 (373)
T 1hz4_A 238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS--------------------------- 290 (373)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------------------------
T ss_pred HHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchh---------------------------
Confidence 99999877653 34678899999999999999999999987654322110
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 009045 430 MASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK 509 (546)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 509 (546)
....++..++.++...|++++|...+.+.+...... +....+...| +.....+++.+...|-
T Consensus 291 -------------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~---g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 291 -------------DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT---GFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp -------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred -------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc---cHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 011356677888888888888888888766533221 1112344444 5666777777777765
No 93
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.80 E-value=3e-17 Score=151.19 Aligned_cols=160 Identities=12% Similarity=0.070 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----------hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC--H
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGR----------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD--M 292 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~ 292 (546)
++|+..+.+++..+|++..+|+.++.++...+. +++++.++..++..+|++..+|...+.++..+|+ +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 689999999999999999999999999988776 7899999999999999999999999999999994 8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcC-HHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
++++.++.+++..+|.+..+|...+.++. ..|. ++++++++.++++.+|.+..+|..+
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~---------------------~l~~~~~eel~~~~~~I~~~p~N~SAW~~R 185 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAA---------------------QAAVAPAEELAFTDSLITRNFSNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HhCcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999998887 6677 6999999999999999999999999
Q ss_pred HHHHHHc--------------CChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 372 ANAYYLT--------------GDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 372 ~~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
+.++... +.++++++++.+++..+|++..+|+.+
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~ 233 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 233 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999887 568999999999999999999888644
No 94
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.79 E-value=3.6e-17 Score=150.64 Aligned_cols=243 Identities=11% Similarity=0.058 Sum_probs=199.8
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhh
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ----------PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHA 202 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 202 (546)
..+|.+++..++..+|++..+|+.++.++...|. +++++.++..++..+|++ ..+|..
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn------------y~aW~h 113 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------------YGTWHH 113 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------------HHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC------------HHHHHH
Confidence 3678899999999999999999999999988876 789999999999998876 245666
Q ss_pred ccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC-hHHHHHHHHhhHhcCCCChHHHHH
Q 009045 203 QCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR-LQSSISVLSSLLAVDPNNCDCIGN 281 (546)
Q Consensus 203 ~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 281 (546)
.+.++..+|.. .+++++.++.++++.+|.+..+|..++.+....|. ++++++++.++++.+|.+..+|..
T Consensus 114 R~wlL~~l~~~---------~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~ 184 (331)
T 3dss_A 114 RCWLLSRLPEP---------NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 184 (331)
T ss_dssp HHHHHHHCSSC---------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHhccCcc---------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 66666555531 36999999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCH
Q 009045 282 LGIAYFQS--------------GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 347 (546)
Q Consensus 282 la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (546)
++.++..+ +.++++++++.+++..+|++..+|+.+..++....+. ..++ ....+.+
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~--------~~~~--~~~~~~l 254 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR--------CELS--VEKSTVL 254 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG--------GGCC--HHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc--------cccc--hHHHHHH
Confidence 99999887 5689999999999999999999998776666522110 0011 2245678
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 348 NVAKECLLAALKADPKAAHIWANLANAYY---LTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 348 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
+++++.+++++++.|++.-.+..++.+.. ..|..++....+.+.++++|.....|..+.
T Consensus 255 ~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 255 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 99999999999999998655444443332 357888999999999999998776665443
No 95
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=2.5e-18 Score=137.16 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=112.6
Q ss_pred hhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcC
Q 009045 267 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 346 (546)
Q Consensus 267 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (546)
++..++|+.+..+..+|..|+..|++++|+..|+++++++|.+..++..+|.++. ..|+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~---------------------~~~~ 62 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT---------------------KLME 62 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTC
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH---------------------hhcc
Confidence 4556899999999999999999999999999999999999999999999999988 8999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 347 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 347 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
+++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.
T Consensus 63 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 63 FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988877654
No 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.78 E-value=4.6e-18 Score=173.76 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=141.2
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
.|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|.+|..+|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--
Q 009045 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-- 378 (546)
Q Consensus 301 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-- 378 (546)
++++++|++..++..+|.++. ..|++++|+..|+++++.+|++..++..+|.++..+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALE---------------------DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999888 899999999999999999999999999999999999
Q ss_pred -CChHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 379 -GDHRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 379 -g~~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
|++++|+..|+++++.+|++...+..++
T Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred cccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999887776554
No 97
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.78 E-value=8e-17 Score=148.83 Aligned_cols=162 Identities=11% Similarity=0.061 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc-C-CHHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-G-DMEQSAKCFQD 301 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~~A~~~~~~ 301 (546)
++|+..+.+++..+|++..+|+.++.++...| .+++++..+.+++..+|++..+|...+.++..+ + ++++++.++.+
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 67899999999999999999999999999999 599999999999999999999999999999998 8 99999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHH--------HHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN--------VAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 302 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
++..+|.+..+|...+.++. ..|.++ ++++++.++++.+|.+..+|..++.
T Consensus 151 ~L~~dpkNy~AW~~R~wvl~---------------------~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~ 209 (349)
T 3q7a_A 151 SLLPDPKNYHTWAYLHWLYS---------------------HFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY 209 (349)
T ss_dssp HTSSCTTCHHHHHHHHHHHH---------------------HHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHH---------------------HhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999998887 444444 9999999999999999999999999
Q ss_pred HHHHcCC-------hHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 374 AYYLTGD-------HRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 374 ~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
++...++ ++++++++++++..+|++..+|+.+..
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRG 250 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999987 799999999999999999999876544
No 98
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=2.3e-16 Score=165.80 Aligned_cols=302 Identities=13% Similarity=0.079 Sum_probs=196.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 149 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
.+++---.....|...|.+.+|++.|++++ +.|..- . .+++.- .. ..++.+. ...++..+.+
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~f-s-~n~~Lq---nl-Li~tAIk-----------aD~~Rv~eyI 1044 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVF-S-EHRNLQ---NL-LILTAIK-----------ADRTRVMEYI 1044 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcc-c-ccHHHH---HH-HHHHHHH-----------hChhhHHHHH
Confidence 345555667788889999999999999998 433310 0 011111 00 1111111 1122333333
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
..+++.+ .-.+|.++...|.+++|...|+++- . ....+...+...|++++|+++++++ +
T Consensus 1045 ~kLd~~d---------~~eIA~Iai~lglyEEAf~IYkKa~----~---~~~A~~VLie~i~nldrAiE~Aerv-----n 1103 (1630)
T 1xi4_A 1045 NRLDNYD---------APDIANIAISNELFEEAFAIFRKFD----V---NTSAVQVLIEHIGNLDRAYEFAERC-----N 1103 (1630)
T ss_pred HHhhhcc---------HHHHHHHHHhCCCHHHHHHHHHHcC----C---HHHHHHHHHHHHhhHHHHHHHHHhc-----C
Confidence 3333221 1236888888999999999998862 1 1112233444788888888888865 5
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 388 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (546)
.+.+|..+|.++. ..|++++|+..|.++ +++..|..+|.++.+.|++++|+++|
T Consensus 1104 ~p~vWsqLAKAql---------------------~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQL---------------------QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred CHHHHHHHHHHHH---------------------hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5778888888877 888899999998775 67888888999999999999999999
Q ss_pred HHHHhcCCCC-hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHH
Q 009045 389 EKAAKLEPNC-MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 467 (546)
Q Consensus 389 ~~al~~~p~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 467 (546)
..+.+..++. .......+...+++. . .+...+. .+ +...|..+|..+...|++++|...
T Consensus 1158 ~mArk~~~e~~Idt~LafaYAKl~rl-------e-------ele~fI~-----~~-n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1158 QMARKKARESYVETELIFALAKTNRL-------A-------ELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred HHHHhhcccccccHHHHHHHHhhcCH-------H-------HHHHHHh-----CC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888877543 222222222221110 0 0111111 11 224566788888888888888888
Q ss_pred HHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHH
Q 009045 468 EENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADP-------------------------KAAHIWANLANAYY 522 (546)
Q Consensus 468 ~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~lg~~~~ 522 (546)
|.++ ..|..+|.+|.++|++++|++.++++....+ .+++.+..++..|.
T Consensus 1218 Y~kA------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1218 YNNV------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQ 1291 (1630)
T ss_pred HHhh------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHH
Confidence 8874 4677888888888888888888887744332 23455667888899
Q ss_pred hcCChHHHHHHHHHHHHHh
Q 009045 523 LTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 523 ~~g~~~~A~~~~~~al~~~ 541 (546)
..|.+++|+.++++++.+-
T Consensus 1292 ~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HcCCHHHHHHHHHHHhccC
Confidence 9999999999999997653
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.78 E-value=9.8e-18 Score=156.87 Aligned_cols=168 Identities=11% Similarity=0.094 Sum_probs=134.5
Q ss_pred HcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccC-hhhHHHHHHHHHHHHhcCccc
Q 009045 163 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE-PEELEEILSKLKESMQSDTRQ 241 (546)
Q Consensus 163 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~ 241 (546)
..|++++|..+++++.+..+.. ++. .+++++|+..|.++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---------------------------------~~~~~~~~~~A~~~~~~a------- 42 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---------------------------------FMKWKPDYDSAASEYAKA------- 42 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---------------------------------SSSCSCCHHHHHHHHHHH-------
T ss_pred ccchHHHHHHHHHHHHHHcccc---------------------------------ccCCCCCHHHHHHHHHHH-------
Confidence 3578899999999998874310 011 36679999888876
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH------ 309 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 309 (546)
|.+|...|++++|+.+|.+++.+.+.. ..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 43 -------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 43 -------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred -------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 678889999999999999999986532 5688999999999999999999999999885432
Q ss_pred HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHH
Q 009045 310 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRS 383 (546)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~ 383 (546)
..++.++|.++ .. |++++|+.+|++++++.+.. ..++.++|.+|..+|++++
T Consensus 116 a~~~~~lg~~~---------------------~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 173 (307)
T 2ifu_A 116 AMALDRAGKLM---------------------EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE 173 (307)
T ss_dssp HHHHHHHHHHH---------------------TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH---------------------Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 22344444444 47 99999999999999987653 5788999999999999999
Q ss_pred HHHHHHHHHhcCCCCh
Q 009045 384 SGKCLEKAAKLEPNCM 399 (546)
Q Consensus 384 A~~~~~~al~~~p~~~ 399 (546)
|+.+|++++.+.|++.
T Consensus 174 A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 174 AAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999876543
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.77 E-value=3.8e-18 Score=145.53 Aligned_cols=152 Identities=11% Similarity=0.043 Sum_probs=128.8
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHH-HcCCHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF-QSGDMEQSAKC 298 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~ 298 (546)
..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. ..+...+|+..
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~ 96 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKR 96 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHH
Confidence 445557777777777777888899999999999999999999999999999999 7777766665533 33344568999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA--AHIWANLANAYY 376 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~ 376 (546)
|+++++.+|++..+++.+|.++. ..|++++|+..|+++++.+|+. ..++..+|.++.
T Consensus 97 ~~~al~~~P~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 97 LEQELAANPDNFELACELAVQYN---------------------QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 99999999999999999998888 8999999999999999999875 669999999999
Q ss_pred HcCChHHHHHHHHHHHh
Q 009045 377 LTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~ 393 (546)
.+|+.++|+..|++++.
T Consensus 156 ~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHCSSCHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 99999999999998875
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.77 E-value=3.1e-18 Score=140.59 Aligned_cols=120 Identities=17% Similarity=0.132 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
-.+-..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|..+|.+|..+|++++|+.+|+++++
T Consensus 19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 19 INSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 34444566777778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
++|+++.+++++|.++. ..|++++|+.+|++++++.|+..
T Consensus 99 l~P~~~~~~~~lg~~~~---------------------~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQL---------------------RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HSSSCCHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888887777776 77888888888888888877654
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.77 E-value=6.3e-18 Score=144.20 Aligned_cols=138 Identities=17% Similarity=0.104 Sum_probs=96.9
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++...| ++.....++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 444556778888888888888888888888888888888888888888888888888888888888888 6655444443
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+... ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus 82 ~~~~--------------------~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 82 LELH--------------------QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHH--------------------HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHH--------------------hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 3221 1122234667777777777777777777777777777777777777777766664
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=2.7e-17 Score=152.07 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=145.4
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChh
Q 009045 143 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 222 (546)
Q Consensus 143 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 222 (546)
+...-|.+...++.+|..+...|++++|+..|+++++.
T Consensus 109 l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------------------------------ 146 (287)
T 3qou_A 109 LDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL------------------------------------------ 146 (287)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------
T ss_pred HHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh------------------------------------------
Confidence 33445888888999999988888888888888877765
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
+|+++.+++.+|.++...|++++|+..|++++..+|+....+...+..+...++.++|+..|+++
T Consensus 147 ---------------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~a 211 (287)
T 3qou_A 147 ---------------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQ 211 (287)
T ss_dssp ---------------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ---------------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHH
Confidence 56667888888888888888888888888888888877777777777788888888888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCC
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA--AHIWANLANAYYLTGD 380 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~ 380 (546)
+..+|++..+++.+|.++. ..|++++|+..|+++++.+|++ ..++..++.++...|+
T Consensus 212 l~~~P~~~~~~~~la~~l~---------------------~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 212 VAENPEDAALATQLALQLH---------------------QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HhcCCccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 8888888888888888887 8888888999898888888887 7888888999988898
Q ss_pred hHHHHHHHHHHHh
Q 009045 381 HRSSGKCLEKAAK 393 (546)
Q Consensus 381 ~~~A~~~~~~al~ 393 (546)
.++|+..|++++.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8888888888775
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.77 E-value=1.1e-18 Score=143.28 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=112.8
Q ss_pred HHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchH
Q 009045 261 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 340 (546)
Q Consensus 261 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 340 (546)
+-..+++++.++|++..+++.+|.+++..|++++|+..|++++.++|+++.+|..+|.++.
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~------------------- 81 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ------------------- 81 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------------------
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------------
Confidence 4456788899999999999999999999999999999999999999999999999999988
Q ss_pred HHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 341 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
..|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|++++++.|+..
T Consensus 82 --~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 82 --IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp --HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred --HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 899999999999999999999999999999999999999999999999999999865
No 105
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=3.7e-19 Score=168.00 Aligned_cols=277 Identities=14% Similarity=0.124 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|.+.+++. +++.+|..+|.++...|++++|++.|.++-.. ..+...+..
T Consensus 20 d~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~-----------------~~y~~V~~~------- 70 (449)
T 1b89_A 20 DRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP-----------------SSYMEVVQA------- 70 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH-----------------HHHHHHHHH-------
Confidence 5555555555 33458888888888888888888888664211 111222222
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
+...|++++|+.+++.+++..++ +.+...++.+|.+.|++.++.++++. |+ ..+|..+|..+...|+|+
T Consensus 71 ----ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~ye 139 (449)
T 1b89_A 71 ----ANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYD 139 (449)
T ss_dssp -------------------------------------------CHHHHTTTTTC-----C-----------------CTT
T ss_pred ----HHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHH
Confidence 23456668888877777775333 66677788888888888887776642 43 357888888888888888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
+|..+|.++ ..|..++.++. ++|++++|++.++++ .++.+|...+.
T Consensus 140 eA~~~Y~~a--------~n~~~LA~~L~---------------------~Lg~yq~AVea~~KA-----~~~~~Wk~v~~ 185 (449)
T 1b89_A 140 AAKLLYNNV--------SNFGRLASTLV---------------------HLGEYQAAVDGARKA-----NSTRTWKEVCF 185 (449)
T ss_dssp THHHHHHHT--------TCHHHHHHHHH---------------------TTTCHHHHHHHHHHH-----TCHHHHHHHHH
T ss_pred HHHHHHHHh--------hhHHHHHHHHH---------------------HhccHHHHHHHHHHc-----CCchhHHHHHH
Confidence 888888765 23555666555 788888888888887 35778888888
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
++...|+++.|..+... +..+|++ ...+..
T Consensus 186 aCv~~~ef~lA~~~~l~-L~~~ad~-------------------------------------------------l~~lv~ 215 (449)
T 1b89_A 186 ACVDGKEFRLAQMCGLH-IVVHADE-------------------------------------------------LEELIN 215 (449)
T ss_dssp HHHHTTCHHHHHHTTTT-TTTCHHH-------------------------------------------------HHHHHH
T ss_pred HHHHcCcHHHHHHHHHH-HHhCHhh-------------------------------------------------HHHHHH
Confidence 88888888888555543 2233321 223455
Q ss_pred HHHhcccHHHHHHHHHhhccc--hhhhHHhhHHHHHH--HhccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhc
Q 009045 454 VQKTHHEVAAAFETEENELSK--MEECAGAGESAFLD--QASAVNVAKECLLAALKADP-----KAAHIWANLANAYYLT 524 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~ 524 (546)
.|.+.|.+++|+..++..+.. .....+..+|.+|. +.++..+.++.|...+.+.| .++..|..+..+|...
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 667777777777777775543 33345555665555 45566777777776666666 6667777777777777
Q ss_pred CChHHHHHHH
Q 009045 525 GDHRSSGKCL 534 (546)
Q Consensus 525 g~~~~A~~~~ 534 (546)
++++.|+...
T Consensus 296 ~e~d~A~~tm 305 (449)
T 1b89_A 296 EEYDNAIITM 305 (449)
T ss_dssp TCHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 7777776544
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.76 E-value=3.7e-17 Score=151.17 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=116.6
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
.|.+...++.+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+........+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 38888899999999999999999999999999999999999999999999999999999999999988886554444444
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
..+. ..++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus 193 ~~l~---------------------~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 193 IELL---------------------XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHH---------------------HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHH---------------------hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 4444 6667777888888888888888888888888888888888888888888888776
Q ss_pred C
Q 009045 398 C 398 (546)
Q Consensus 398 ~ 398 (546)
+
T Consensus 252 ~ 252 (287)
T 3qou_A 252 A 252 (287)
T ss_dssp G
T ss_pred c
Confidence 4
No 107
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=9.8e-18 Score=158.33 Aligned_cols=267 Identities=13% Similarity=0.084 Sum_probs=130.4
Q ss_pred cccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHH
Q 009045 122 DGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 196 (546)
Q Consensus 122 ~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 196 (546)
...|..+|.. +...|+++|.++ +++..+...+..+...|++++|+.+++.+++..++
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~------------- 93 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE------------- 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-------------
Confidence 3477777766 456777777653 57779999999999999999999999999875221
Q ss_pred HHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh
Q 009045 197 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 276 (546)
..+...++.+|. +.|++.++..+++. |+ ..+|..+|..+...|+|++|+.+|.++
T Consensus 94 ~~i~~~Li~~Y~-----------Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 94 SYVETELIFALA-----------KTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------
T ss_pred chhHHHHHHHHH-----------HhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 122334444544 44556888877742 43 469999999999999999999999987
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
..|..+|.++.++|++++|++.|+++ .++.+|...+.++. ..|+++.|..+...
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv---------------------~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV---------------------DGKEFRLAQMCGLH 202 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH---------------------HTTCHHHHHHTTTT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH---------------------HcCcHHHHHHHHHH
Confidence 47999999999999999999999999 47888988888887 89999999887775
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhc
Q 009045 357 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 436 (546)
Q Consensus 357 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (546)
+..+|+ -...+..+|...|++++|+.++++++.+++.+...+..++.....-.. +.+... .+.+..
T Consensus 203 -L~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p------~k~~eh----l~~~~~ 268 (449)
T 1b89_A 203 -IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP------QKMREH----LELFWS 268 (449)
T ss_dssp -TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH------HHHHHH----HHHHST
T ss_pred -HHhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH------HHHHHH----HHHHHH
Confidence 334544 355688999999999999999999999999988888777654321100 000000 011111
Q ss_pred CCCCCC-----CcHHHHHHHHHHHHhcccHHHHHHHHHhh
Q 009045 437 GDPVQI-----EPPIAWAGFAAVQKTHHEVAAAFETEENE 471 (546)
Q Consensus 437 ~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 471 (546)
...+.+ +.+..|..+..+|...++++.|+......
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 111111 23456777777887778887777766553
No 108
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.75 E-value=2.8e-16 Score=145.23 Aligned_cols=247 Identities=12% Similarity=0.039 Sum_probs=188.5
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccccc-C
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS-G 211 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g 211 (546)
.+|.+.+.+++..+|++..+|+.++.++...| .+++++.++++++..+|++ ..+|...+.++..+ +
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn------------y~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS------------YQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC------------HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc------------HHHHHHHHHHHHHhcC
Confidence 67889999999999999999999999999999 5999999999999998876 24555566655544 4
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChH--------HHHHHHHhhHhcCCCChHHHHHHH
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ--------SSISVLSSLLAVDPNNCDCIGNLG 283 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la 283 (546)
. ++++++.++.++++.+|.+..+|..++.++...|.++ +++++++++++.+|.|..+|..++
T Consensus 139 ~----------~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~ 208 (349)
T 3q7a_A 139 Q----------DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRW 208 (349)
T ss_dssp S----------CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred C----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 0 2389999999999999999999999999999999988 999999999999999999999999
Q ss_pred HHHHHcCC-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccc-cccccccchHHHhhcCHHHHHHHHH
Q 009045 284 IAYFQSGD-------MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG-AGANTGEGACLDQASAVNVAKECLL 355 (546)
Q Consensus 284 ~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~ 355 (546)
.++..++. ++++++++++++..+|++..+|..+..++...+...... ...+-.-|... .-....-.+.+.
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 286 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKL--NPDIETVEAFGF 286 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----------------C
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccc--cccchhHHHHHH
Confidence 99999987 799999999999999999999998887776322110000 00000000000 000122222222
Q ss_pred HHHhc------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCChhHHHH
Q 009045 356 AALKA------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAA-KLEPNCMSTRYA 404 (546)
Q Consensus 356 ~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~ 404 (546)
..+.. .+.++.++..++.+|...|+.++|+++|+... +.+|-....|..
T Consensus 287 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp CCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 22222 25678899999999999999999999999987 667765555443
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.75 E-value=3e-17 Score=153.56 Aligned_cols=160 Identities=12% Similarity=0.138 Sum_probs=129.2
Q ss_pred ChhhHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTR------QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYF 287 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 287 (546)
..|++++|+..|.+++++.+. ...++..+|.+|..+|++++|+.+|++++.+.+.. ..++.++|.+|.
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 345567777777777665442 25588899999999999999999999999884322 467889999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC
Q 009045 288 QSGDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361 (546)
Q Consensus 288 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 361 (546)
. |++++|+.+|++++.+.+.. ..++.++|.++. ..|++++|+.+|++++.+.
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV---------------------RQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHH
Confidence 9 99999999999999987653 234455555554 9999999999999999986
Q ss_pred CCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 362 PKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 362 p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
|.+ ..++..+|.++..+|++++|+.+|++++ ++|......
T Consensus 186 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSH
T ss_pred HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCH
Confidence 543 3478889999999999999999999999 999876544
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.73 E-value=1.7e-17 Score=136.54 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=94.6
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
++.+++.+|.++. ..|++++|+..|+++++++|+++..
T Consensus 88 ~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLL---------------------QXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 8888877777776 7788888888888888877765544
No 111
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.73 E-value=4.4e-19 Score=167.86 Aligned_cols=203 Identities=12% Similarity=0.077 Sum_probs=155.5
Q ss_pred ChhhHHHHHHHHHH----HHhcCcccHHHHHHHHHHHH------------HcCChHHHHHHHHhhHhcCCCChHHHHHHH
Q 009045 220 EPEELEEILSKLKE----SMQSDTRQAVVWNTLGLILL------------KSGRLQSSISVLSSLLAVDPNNCDCIGNLG 283 (546)
Q Consensus 220 ~~~~~~~A~~~~~~----al~~~p~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la 283 (546)
..+.+++|+..+.+ ++.+.|.. +|..+|.... .++++++|+..|++++..+|+++.++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 46688999999988 88888876 5555665443 456677778788887777777788888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 284 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
.+++..|++++|+..|++++.+.|.+.... . +......|.
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---------------------------------~-------~~~~~~~~~ 194 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFS---------------------------------N-------EEAQKAQAL 194 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------------------------------S-------HHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCC---------------------------------h-------HHHHHHHHH
Confidence 888888888888888888888877653200 0 011122233
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 009045 364 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE 443 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (546)
...++.++|.+|..+|++++|+.+|+++++++|++..+++.
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~--------------------------------------- 235 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR--------------------------------------- 235 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH---------------------------------------
Confidence 36788999999999999999999999999999987644433
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 009045 444 PPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 523 (546)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 523 (546)
+|.+|...|++++|+..|+++++++|++..++..+|.++..
T Consensus 236 ---------------------------------------lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 236 ---------------------------------------RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp ---------------------------------------HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 33377788899999999999999999999999999999999
Q ss_pred cCChHHH-HHHHHHHHHHhc
Q 009045 524 TGDHRSS-GKCLEKVLMVYC 542 (546)
Q Consensus 524 ~g~~~~A-~~~~~~al~~~~ 542 (546)
.|++++| ...|++++..+.
T Consensus 277 ~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 277 IRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 9999988 567888877653
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.73 E-value=8.4e-17 Score=164.39 Aligned_cols=165 Identities=18% Similarity=0.120 Sum_probs=131.2
Q ss_pred cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccc
Q 009045 255 SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGAN 334 (546)
Q Consensus 255 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 334 (546)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~------------- 68 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW------------- 68 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------
Confidence 4789999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhh
Q 009045 335 TGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE 414 (546)
Q Consensus 335 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~ 414 (546)
..|++++|+.+|+++++++|++..++..+|.+|...|++++|+..|+++++.+|++..++..+
T Consensus 69 --------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------- 131 (568)
T 2vsy_A 69 --------TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL--------- 131 (568)
T ss_dssp --------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---------
T ss_pred --------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---------
Confidence 899999999999999999999999999999999999999999999999999999876444333
Q ss_pred hccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHh---c
Q 009045 415 RSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQA---S 491 (546)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~---g 491 (546)
|.++... |
T Consensus 132 ---------------------------------------------------------------------~~~~~~~~~~g 142 (568)
T 2vsy_A 132 ---------------------------------------------------------------------LNWRRRLCDWR 142 (568)
T ss_dssp ---------------------------------------------------------------------HHHHHHTTCCT
T ss_pred ---------------------------------------------------------------------HHHHHHhhccc
Confidence 2256666 7
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009045 492 AVNVAKECLLAALKADPKAAHIWANLA 518 (546)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg 518 (546)
++++|+..|+++++.+|++...+..++
T Consensus 143 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp THHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred cHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 888888888888888888877776666
No 113
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=1.8e-17 Score=156.84 Aligned_cols=154 Identities=11% Similarity=0.105 Sum_probs=143.9
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---------------hHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLGI 284 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 284 (546)
..+++++|+..|++++..+|.++.++..+|.+++..|++++|+..|++++.++|++ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44566888888999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC
Q 009045 285 AYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364 (546)
Q Consensus 285 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 364 (546)
+|..+|++++|+.+|+++++++|++..+++.+|.++. ..|++++|+..|+++++++|++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL---------------------AVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999888 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHH-HHHHHHHHhc
Q 009045 365 AHIWANLANAYYLTGDHRSS-GKCLEKAAKL 394 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~ 394 (546)
..++..++.++..+|++++| ...|++++..
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 5577777654
No 114
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.70 E-value=9.7e-17 Score=131.37 Aligned_cols=123 Identities=18% Similarity=0.126 Sum_probs=85.3
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
..|++++..+|++...++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
++..++.+|.++. ..|++++|+.+|+++++++|+++.......
T Consensus 85 ~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 85 EPRFPFHAAECHL---------------------QLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp CTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred CcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 7777777666666 667777777777777777666554444333
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.70 E-value=1.7e-15 Score=133.18 Aligned_cols=152 Identities=16% Similarity=0.090 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC----CHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG----DMEQSAKCFQ 300 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 300 (546)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4678888888875 67899999999999999999999999999875 678999999999988 7 8999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH-
Q 009045 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYYL- 377 (546)
Q Consensus 301 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~- 377 (546)
++.+ +.++.+++.+|.++..-. ...+++++|+.+|+++++..+ .++.+++.||.+|..
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~-----------------g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQ-----------------AGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGG-----------------GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHH--CCCHHHHHHHHHHHHcCC-----------------CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 9964 578899999998886210 026899999999999999887 358999999999999
Q ss_pred ---cCChHHHHHHHHHHHhcCCCChhH
Q 009045 378 ---TGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 378 ---~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
.+++++|+.+|+++++. +.++.+
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred CCCCCCHHHHHHHHHHHHHc-CCCHHH
Confidence 88999999999999987 444433
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.70 E-value=1.1e-16 Score=131.79 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=114.4
Q ss_pred HHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHH
Q 009045 262 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 341 (546)
Q Consensus 262 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (546)
-..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-------------------- 66 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-------------------- 66 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------------------
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH--------------------
Confidence 456889999999999999999999999999999999999999999999999999999888
Q ss_pred HhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 342 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
..|++++|+..|++++.++|+++.+++.+|.+|..+|++++|+..|++++++.|+++...
T Consensus 67 -~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 67 -AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp -HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred -HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 899999999999999999999999999999999999999999999999999999887653
No 117
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.70 E-value=1.1e-15 Score=123.58 Aligned_cols=134 Identities=30% Similarity=0.506 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++...|.+...+..++.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~- 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY- 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred hhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
..|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|+
T Consensus 81 --------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 --------------------KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp --------------------TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred --------------------HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8999999999999999999999999999999999999999999999999999886
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.70 E-value=8.6e-16 Score=135.05 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCc
Q 009045 135 REEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 214 (546)
Q Consensus 135 ~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (546)
+|.+.|+++.+. .++.+++.+|.+|...+++++|+.+|+++++.. . ..+++.++.+|.. +..
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------~------~~a~~~lg~~y~~-~g~- 65 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------D------GDALALLAQLKIR-NPQ- 65 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------C------HHHHHHHHHHTTS-STT-
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------C------HHHHHHHHHHHHc-CCC-
Confidence 456677777765 789999999999999999999999999998752 1 1334445544433 100
Q ss_pred cccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCChHHHHHHHHhhHhcCC--CChHHHHHHHHHHHH
Q 009045 215 LDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDP--NNCDCIGNLGIAYFQ 288 (546)
Q Consensus 215 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~ 288 (546)
..++++|+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++++..+ .++.+++.||.+|..
T Consensus 66 ------~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 66 ------QADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp ------SCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 1256777777777643 3556667777777666 6677777777777766665 236666677777766
Q ss_pred ----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 289 ----SGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 289 ----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
.+++++|+.+|+++++. +.+..+++.+|.+|.
T Consensus 138 g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 138 GVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp TSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 66666666666666666 555666666666654
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.70 E-value=1e-16 Score=147.67 Aligned_cols=198 Identities=13% Similarity=0.003 Sum_probs=135.0
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 273 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 273 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
|.++..+..+|..++..|++++|+..|++++..+|++..++.++|.++. ..|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------------------~~~~~~~A~~ 59 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL---------------------KMQQPEQALA 59 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------------------HhcCHHHHHH
Confidence 4567778888888888888888888888888888888888888888777 7788888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 009045 353 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMAS 432 (546)
Q Consensus 353 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 432 (546)
.|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|++...+.......+..
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~-------------------- 119 (281)
T 2c2l_A 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI-------------------- 119 (281)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH--------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH--------------------
Confidence 888888888888888888888888888888888888888888886532211111100000
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 009045 433 ILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAH 512 (546)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 512 (546)
.....+.. ......+.+......++.+ ..|++++|++.++++++++|++..
T Consensus 120 -----------------------~~~~~~~~----~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~ 170 (281)
T 2c2l_A 120 -----------------------AKKKRWNS----IEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGH 170 (281)
T ss_dssp -----------------------HHHHHHHH----HHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHH
T ss_pred -----------------------HHHHHHHH----HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhh
Confidence 00000000 0001111122222222222 367888888888888888888888
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 009045 513 IWANLANAYYLT-GDHRSSGKCLEKVLMV 540 (546)
Q Consensus 513 ~~~~lg~~~~~~-g~~~~A~~~~~~al~~ 540 (546)
....++.++... +.+++|...|.++.+.
T Consensus 171 ~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 171 IRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 878887777665 6788888888877653
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.69 E-value=9.9e-17 Score=143.31 Aligned_cols=199 Identities=13% Similarity=0.047 Sum_probs=165.8
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHH-------HHHHHHcCChHHHHHHHHhhHhcCCCChHH---------------
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTL-------GLILLKSGRLQSSISVLSSLLAVDPNNCDC--------------- 278 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------- 278 (546)
.+++..|...|.++++.+|...++|..+ +.++...+++.+++..+++.+.+.|....+
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 5677999999999999999999999999 899999999999999999999988765443
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 279 ------IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 279 ------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
+..++.++...|++++|.+.|..++...|.+. ..+.++.++. +.++|++|+.
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~---------------------~~~r~~dA~~ 156 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG---------------------AAERWTDVID 156 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH---------------------HcCCHHHHHH
Confidence 44488899999999999999999998888887 8888887777 8999999999
Q ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHhhhccCchhHHHHHHH
Q 009045 353 CLLAALKADPK--AAHIWANLANAYYLTGDHRSSGKCLEKAAKLE--PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGN 428 (546)
Q Consensus 353 ~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 428 (546)
.|+.++...+. ...+++.+|.++..+|++++|+.+|++++.-. |..
T Consensus 157 ~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~------------------------------ 206 (282)
T 4f3v_A 157 QVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC------------------------------ 206 (282)
T ss_dssp HHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT------------------------------
T ss_pred HHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc------------------------------
Confidence 99988765322 14589999999999999999999999998532 321
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC
Q 009045 429 EMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADP 508 (546)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 508 (546)
...+++.+|.++.++|+.++|...|++++..+|
T Consensus 207 -----------------------------------------------~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 207 -----------------------------------------------ARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred -----------------------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 112334455588899999999999999999999
Q ss_pred CCHHHHHHHHH
Q 009045 509 KAAHIWANLAN 519 (546)
Q Consensus 509 ~~~~~~~~lg~ 519 (546)
+ ..++..|..
T Consensus 240 ~-~~~~~aL~~ 249 (282)
T 4f3v_A 240 E-PKVAAALKD 249 (282)
T ss_dssp C-HHHHHHHHC
T ss_pred c-HHHHHHHhC
Confidence 8 777766643
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.69 E-value=7.3e-17 Score=144.17 Aligned_cols=214 Identities=11% Similarity=-0.004 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHH
Q 009045 152 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 231 (546)
Q Consensus 152 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 231 (546)
..++..|.-+ ..+++.+|...|.++++++|+. +..|.+++.+ |+.....+...++..+++..+
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~------------~Daw~g~~a~----g~~~~~~L~~~~r~~~a~~~~ 70 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESA------------CDAWIGRIRC----GDTDRVTLFRAWYSRRNFGQL 70 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHT----TCCCHHHHHHHHHTGGGTTHH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhh------------hHHHHhHHHc----cCCcHHHHHHHHHHHHHHHHH
Confidence 3455566665 5899999999999999997764 3445555211 222222234555568888899
Q ss_pred HHHHhcCcccHH---------------------HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC
Q 009045 232 KESMQSDTRQAV---------------------VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 290 (546)
Q Consensus 232 ~~al~~~p~~~~---------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 290 (546)
++.+.+.|.... +...++.++...|+|++|.+.|..++...|++. +++.+|.+++..+
T Consensus 71 ~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~ 149 (282)
T 4f3v_A 71 SGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAE 149 (282)
T ss_dssp HHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTT
T ss_pred HHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcC
Confidence 999998776433 445588999999999999999999999999888 9999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--CC-CH
Q 009045 291 DMEQSAKCFQDLILKDQNH--PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PK-AA 365 (546)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~ 365 (546)
+|++|+..|+++....+.. ..+++.+|.++. .+|++++|+.+|++++... |. .+
T Consensus 150 r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~---------------------~LG~~~eAl~~l~~a~~g~~~P~~~~ 208 (282)
T 4f3v_A 150 RWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA---------------------NLALFTEAERRLTEANDSPAGEACAR 208 (282)
T ss_dssp CHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTSTTTTTTHH
T ss_pred CHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHhcCCCCccccH
Confidence 9999999999876643111 235677777666 9999999999999998654 55 67
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
.+++.+|.++..+|+.++|...|++++..+|+ ..+...+
T Consensus 209 da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 209 AIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 89999999999999999999999999999998 7665554
No 122
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.69 E-value=5e-14 Score=143.55 Aligned_cols=383 Identities=11% Similarity=0.031 Sum_probs=242.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCc
Q 009045 135 REEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 214 (546)
Q Consensus 135 ~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (546)
.....|++.+..+|.+...|..+.......+.++.+...|++++...|... ..|...+...
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~------------~lW~~Yi~~E------- 110 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA------------NIWCMRLSLE------- 110 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------------HHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCH------------HHHHHHHHHH-------
Confidence 344567788888888888888888888888888888888888888876541 1222222111
Q ss_pred cccccChhh---HHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCh----HH----HHHHHHhhHhc----CCCChH
Q 009045 215 LDKELEPEE---LEEILSKLKESMQSDT--RQAVVWNTLGLILLKSGRL----QS----SISVLSSLLAV----DPNNCD 277 (546)
Q Consensus 215 ~~~~~~~~~---~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~ 277 (546)
+..++ ++.+..+|++++...| .+..+|..........++. ++ ....|++++.. ++....
T Consensus 111 ----~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~ 186 (679)
T 4e6h_A 111 ----FDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQ 186 (679)
T ss_dssp ----HTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred ----HhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchH
Confidence 23344 7888888888888873 5667777776655555543 23 34677777653 565666
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCC-HH-HHHHHHHHH-------------------------H
Q 009045 278 CIGNLGIAYF---------QSGDMEQSAKCFQDLILKDQNH-PA-ALINYAALL-------------------------L 321 (546)
Q Consensus 278 ~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~-~~-~~~~l~~~~-------------------------~ 321 (546)
+|........ .+++.+.+...|++++.+ |.. .. .|..+...- .
T Consensus 187 iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 187 FWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHH
Confidence 6666554433 234567788888888864 322 11 111110000 0
Q ss_pred Hh---hCccccc------------------------cccccccchHHHhhc-------CHHHHHHHHHHHHhcCCCCHHH
Q 009045 322 CK---YGSVLAG------------------------AGANTGEGACLDQAS-------AVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 322 ~~---~~~~~~~------------------------~~~~~~~~~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~ 367 (546)
.. ....+.. ...|..........+ ..+.....|++++...|.++.+
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~l 345 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEI 345 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHH
Confidence 00 0000000 000000111111111 1344668899999999999999
Q ss_pred HHHHHHHHHHcCChHHHH-HHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHH---hcCCCC---
Q 009045 368 WANLANAYYLTGDHRSSG-KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL---REGDPV--- 440 (546)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--- 440 (546)
|+..+..+...|+.++|. ..|++++...|.+...+...+...... .....+..-+..+...+...+ ....+.
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~-~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN-TKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 999999999999999997 999999999999876666555433221 111111112222222111111 010000
Q ss_pred -----CCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc-h--hhhHHhhHHHHHHHhc-cHHHHHHHHHHHHHhCCCCH
Q 009045 441 -----QIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK-M--EECAGAGESAFLDQAS-AVNVAKECLLAALKADPKAA 511 (546)
Q Consensus 441 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~ 511 (546)
......+|..++......|..+.|...+.+++.. . ....|...|.+..+.+ +++.|...|+.+++..|+++
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~ 504 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch
Confidence 0023457999999999999999999999998764 2 2345555555555554 48999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 512 HIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
..|...+......|+.+.|...|++++...+
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998765
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.68 E-value=3.9e-15 Score=131.21 Aligned_cols=145 Identities=18% Similarity=0.223 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
...++.+|.++...|++++|+..|++++ +| ++.+++.+|.+|...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4567889999999999999999999996 33 68899999999999999999999999999999999999999999888
Q ss_pred HhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCChHHHH
Q 009045 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA----------------HIWANLANAYYLTGDHRSSG 385 (546)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~ 385 (546)
..|++++|+..|+++++..|.+. .++..+|.++...|++++|+
T Consensus 83 ---------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 83 ---------------------QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 89999999999999999888766 99999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 386 KCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 386 ~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
..|++++++.|++.......+...+
T Consensus 142 ~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 142 EQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp HHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHHHHcCcccccchHHHHHHHH
Confidence 9999999999988665555444333
No 124
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.67 E-value=4.9e-14 Score=143.64 Aligned_cols=390 Identities=10% Similarity=-0.010 Sum_probs=249.9
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHH
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ---PLKAVSSYEKAEEI 180 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~ 180 (546)
+.+++.|..+|.+...|...... ....+...|++++...|.....|...+......|+ ++.+...|++++..
T Consensus 53 ~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 53 GKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 67888899999888877654332 33678889999999999999999999999999999 99999999999998
Q ss_pred hcccchhccchhhHHHHHHHhhccccccccCCCccccccC--hhhHHHHHHHHHHHHhc----CcccHHHHHHHHHHHH-
Q 009045 181 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE--PEELEEILSKLKESMQS----DTRQAVVWNTLGLILL- 253 (546)
Q Consensus 181 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~- 253 (546)
.|.+. ..+ +|...+......+.. .. .+..+.....|++++.. ++....+|........
T Consensus 133 ~~~~~----sv~------LW~~Yl~f~~~~~~~-----~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 133 ELGNN----DLS------LWLSYITYVRKKNDI-----ITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp SSCCC----CHH------HHHHHHHHHHHHSCS-----TTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred cCCCC----CHH------HHHHHHHHHHHhccc-----ccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh
Confidence 63110 111 111111100001110 00 11122333444444432 3333344433333221
Q ss_pred --------HcCChHHHHHHHHhhHhcCCCCh-------------------------------------------------
Q 009045 254 --------KSGRLQSSISVLSSLLAVDPNNC------------------------------------------------- 276 (546)
Q Consensus 254 --------~~g~~~~A~~~~~~al~~~p~~~------------------------------------------------- 276 (546)
.+++.+.+..+|++++.+-....
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhh
Confidence 12234444455555544211110
Q ss_pred -------------------------HHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009045 277 -------------------------DCIGNLGIAYFQSG-------DMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 324 (546)
Q Consensus 277 -------------------------~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 324 (546)
..|......-...+ ..+.....|++++...|.++..|+.++..+.
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~--- 354 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQG--- 354 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH---
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH---
Confidence 11211111111111 1223456788888888888888887777766
Q ss_pred CccccccccccccchHHHhhcCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------
Q 009045 325 GSVLAGAGANTGEGACLDQASAVNVAK-ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE-------- 395 (546)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------- 395 (546)
..|+.++|+ ..|++++...|.+...|...+.+....|++++|...|++++...
T Consensus 355 ------------------~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~ 416 (679)
T 4e6h_A 355 ------------------EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM 416 (679)
T ss_dssp ------------------HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 778888997 99999999999999999999999999999999999999999752
Q ss_pred ---CCC-----------hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcc-c
Q 009045 396 ---PNC-----------MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH-E 460 (546)
Q Consensus 396 ---p~~-----------~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 460 (546)
|.+ ..+|...+..... . ..+..+..-+...+... ......+|...+.+....+ +
T Consensus 417 ~~~p~~~~~~~~~~~~~~~vWi~y~~~erR-----~---~~l~~AR~vf~~A~~~~---~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 417 EDDPTNESAINQLKSKLTYVYCVYMNTMKR-----I---QGLAASRKIFGKCRRLK---KLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-----H---HCHHHHHHHHHHHHHTG---GGSCTHHHHHHHHHHHTTTSC
T ss_pred hccCcchhhhhhhccchHHHHHHHHHHHHH-----c---CCHHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHhCCC
Confidence 432 1122222221111 1 11122222222222220 1123467777777777665 4
Q ss_pred HHHHHHHHHhhccc--hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009045 461 VAAAFETEENELSK--MEECAGAGESAFLDQASAVNVAKECLLAALKADP---KAAHIWANLANAYYLTGDHRSSGKCLE 535 (546)
Q Consensus 461 ~~~A~~~~~~~l~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (546)
++.|...|...+.. .....|...+......|+.+.|...|++++...| .....|......-...|+.+.+...++
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999999998874 3445566777788889999999999999999988 356788888888899999999999999
Q ss_pred HHHHHhcccC
Q 009045 536 KVLMVYCSSN 545 (546)
Q Consensus 536 ~al~~~~~~~ 545 (546)
++.+.+|+++
T Consensus 566 R~~~~~P~~~ 575 (679)
T 4e6h_A 566 RFFEKFPEVN 575 (679)
T ss_dssp HHHHHSTTCC
T ss_pred HHHHhCCCCc
Confidence 9999998653
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.67 E-value=6.4e-16 Score=126.45 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=111.5
Q ss_pred HHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHH
Q 009045 263 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 342 (546)
Q Consensus 263 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (546)
..|++++.++|++...++.+|.+++..|++++|+..|++++..+|++..++..+|.++.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--------------------- 63 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ--------------------- 63 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------------------
Confidence 57889999999999999999999999999999999999999999999999999999888
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 403 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 403 (546)
..|++++|+.+|++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++....
T Consensus 64 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 64 SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 8999999999999999999999999999999999999999999999999999998876544
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.2e-15 Score=120.45 Aligned_cols=118 Identities=18% Similarity=0.089 Sum_probs=98.7
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|..+..+..+|..++..|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHH
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD------PKAAHIWANLANAYYL 377 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 377 (546)
++. ..|++++|+..|+++++++ |.+..++..++.+...
T Consensus 81 ~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQI---------------------AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHH---------------------HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHH---------------------HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 777 7888888888888888888 8888888777776654
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.65 E-value=1.2e-15 Score=130.19 Aligned_cols=130 Identities=16% Similarity=0.209 Sum_probs=118.8
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH-HHHcCCH--HH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA-YFQSGDM--EQ 294 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~ 294 (546)
+...|++++|+..|+++++.+|.++.+++.+|.++...|++++|+.+|++++.++|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
|+..|+++++.+|++..++..+|.++. ..|++++|+..|+++++.+|.+....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAF---------------------MQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999999999999999999998888 88999999999999999999875544
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=6.8e-15 Score=148.05 Aligned_cols=163 Identities=12% Similarity=0.062 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----------hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC--CH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGR----------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--DM 292 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~ 292 (546)
++|+..+.+++..+|++..+|+.++.++...|+ +++++..++++++.+|++..+|...+.++..+| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 789999999999999999999999999999998 999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhc-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS-AVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
+++++.++++++.+|.+..+|...+.++. ..| .++++++++.++++.+|.+..+|..+
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~---------------------~l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAA---------------------QAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHH---------------------HcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 99999999999999999999999998887 677 89999999999999999999999999
Q ss_pred HHHHHHc--------------CChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009045 372 ANAYYLT--------------GDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 408 (546)
Q Consensus 372 ~~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 408 (546)
+.++..+ +.++++++++.+++.++|++..+|+.+...
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 9999885 567999999999999999999999887653
No 129
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.65 E-value=1.6e-15 Score=121.11 Aligned_cols=110 Identities=14% Similarity=0.195 Sum_probs=93.8
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
+.+.++..+|.+++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++...+..++.+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999998877666555555
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
+. .+|.++...|++++|+++|++++...|+
T Consensus 86 ~~--------------~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MS--------------RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HH--------------HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HH--------------HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 54 2455666777777777777777777664
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=3.5e-16 Score=143.98 Aligned_cols=188 Identities=11% Similarity=-0.015 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHH
Q 009045 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 227 (546)
Q Consensus 148 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 227 (546)
|.++..++.+|..+...|++++|+..|+++++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------------------------------- 35 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--------------------------------------------- 35 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------------------------------
Confidence 56778888888888888888888888888887644
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 228 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 228 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
+++.+++++|.++...|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|
T Consensus 36 ------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 36 ------------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp ------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 34445555555555555555555555555555555555555555555555555555555555555554
Q ss_pred CCH-----HHHHHHHHHHHHhhC-----ccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 308 NHP-----AALINYAALLLCKYG-----SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 308 ~~~-----~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
++. ..+..+......... ...........++.+ ..|++++|++.++++++.+|++......++.++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 181 (281)
T 2c2l_A 104 EQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181 (281)
T ss_dssp HTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHH
Confidence 331 111111000000000 000000000001111 35778888888888888888887777777777766
Q ss_pred c-CChHHHHHHHHHHHhc
Q 009045 378 T-GDHRSSGKCLEKAAKL 394 (546)
Q Consensus 378 ~-g~~~~A~~~~~~al~~ 394 (546)
. +.+++|...|.++.+.
T Consensus 182 ~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 182 HDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 6 6678888888877764
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.1e-14 Score=146.54 Aligned_cols=191 Identities=11% Similarity=0.014 Sum_probs=161.4
Q ss_pred HcCC-hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 254 KSGR-LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD----------MEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 254 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
..|+ .++|+..+.+++.++|++..+|+..+.++..+|+ +++++..++++++.+|++..+|...+.++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~- 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS- 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 4444 4678999999999999999999999999999998 999999999999999999999999999987
Q ss_pred hhCccccccccccccchHHHhhc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCh
Q 009045 323 KYGSVLAGAGANTGEGACLDQAS--AVNVAKECLLAALKADPKAAHIWANLANAYYLTG-DHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~ 399 (546)
+.+ +++++++++.++++.+|.+..+|...+.++...| .++++++++.++++.+|.+.
T Consensus 119 --------------------~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~ 178 (567)
T 1dce_A 119 --------------------RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178 (567)
T ss_dssp --------------------TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred --------------------HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc
Confidence 777 7799999999999999999999999999999999 89999999999999999998
Q ss_pred hHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhH
Q 009045 400 STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 479 (546)
Q Consensus 400 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 479 (546)
.+|...+..... .+....+ ....
T Consensus 179 saW~~r~~ll~~----------------------------------------------l~~~~~~-------~~~~---- 201 (567)
T 1dce_A 179 SSWHYRSCLLPQ----------------------------------------------LHPQPDS-------GPQG---- 201 (567)
T ss_dssp HHHHHHHHHHHH----------------------------------------------HSCCCCS-------SSCC----
T ss_pred cHHHHHHHHHHh----------------------------------------------hcccccc-------cccc----
Confidence 877766553211 0000000 0000
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH
Q 009045 480 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 529 (546)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 529 (546)
-...+.++++++++.+++..+|++..+|+.++.++...+++++
T Consensus 202 -------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 -------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp -------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred -------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 0012458999999999999999999999999999999988666
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.64 E-value=2.3e-15 Score=128.44 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=119.2
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhhCccccc
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL-LLCKYGSVLAG 330 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~~~~~ 330 (546)
+...|++++|+..|++++..+|++..++..+|.+|...|++++|+.+|+++++++|.+...+..+|.+ +.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~--------- 90 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY--------- 90 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH---------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------
Confidence 45679999999999999999999999999999999999999999999999999999999999999988 55
Q ss_pred cccccccchHHHhhcCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHH
Q 009045 331 AGANTGEGACLDQASAV--NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 403 (546)
Q Consensus 331 ~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 403 (546)
..|++ ++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++..+|++.....
T Consensus 91 ------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 91 ------------QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp ------------HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred ------------hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 78888 99999999999999999999999999999999999999999999999999865543
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.64 E-value=9e-15 Score=123.10 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=123.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHcCChHHHHHHHHHHHhc
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN--AYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~ 394 (546)
. ..|++++|+.+|+++++.+|.+..++..++. .+...|++++|+..+.++..+
T Consensus 92 ~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 M---------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------------------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 7 8999999999999999999999988855554 488899999999999987654
No 134
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.63 E-value=8.7e-16 Score=133.67 Aligned_cols=153 Identities=15% Similarity=0.089 Sum_probs=127.8
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh----------------HHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC----------------DCIGNLG 283 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la 283 (546)
..|+++++.+.+.......+..+..+..+|.+++..|+|++|+..|++++.+.|.++ .++.++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 345668888777777777777888999999999999999999999999999999887 8999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 284 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
.++..+|++++|+.+++++++++|.+..+++.+|.++. ..|++++|+..|+++++++|+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM---------------------YFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999998887 899999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHH-HHHHHHHh
Q 009045 364 AAHIWANLANAYYLTGDHRSSG-KCLEKAAK 393 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~ 393 (546)
+..++..++.++...++..++. ..|.+.+.
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998888777 44555443
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.63 E-value=2.6e-14 Score=132.71 Aligned_cols=181 Identities=10% Similarity=-0.023 Sum_probs=129.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH
Q 009045 274 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 353 (546)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 353 (546)
.....+...+..+...|++++|++.+.++++..+........+...+ .+|.++...|++++|+.+
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~A~~~ 137 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQY---------------YVAAYVLKKVDYEYCILE 137 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH---------------HHHHHHHTSSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHH---------------HHHHHHhcCCCHHHHHHH
Confidence 34455666777888888888888888888887766543321111111 134555588899999999
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCChhHHHHHHHHHHHHhhhccCchhHHH
Q 009045 354 LLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKL---EPNCMSTRYAVAVSRIKDAERSQEPTEQLS 424 (546)
Q Consensus 354 ~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 424 (546)
|+++++..+.. ..++..+|.+|...|++++|+.+|++++++ .|++...
T Consensus 138 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~----------------------- 194 (293)
T 2qfc_A 138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF----------------------- 194 (293)
T ss_dssp HHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-----------------------
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc-----------------------
Confidence 99998765443 568899999999999999999999999944 3432110
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHH
Q 009045 425 WAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAAL 504 (546)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 504 (546)
...+++++|.+|...|++++|+.++++++
T Consensus 195 ---------------------------------------------------~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 195 ---------------------------------------------------DVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------------------------------------------hHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 01234456667778888888888888888
Q ss_pred HhCCC------CHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHhcc
Q 009045 505 KADPK------AAHIWANLANAYYLTGDHRSS-GKCLEKVLMVYCS 543 (546)
Q Consensus 505 ~~~p~------~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~~~ 543 (546)
++.++ ...+++++|.+|..+|++++| ..+|++|+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 76432 267888999999999999999 7789998887753
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.63 E-value=9.7e-15 Score=117.76 Aligned_cols=122 Identities=12% Similarity=0.115 Sum_probs=113.6
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
.|....+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+.+|+++++.+|.+..++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 380 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 380 (546)
.++. ..|++++|+.+|+++++.+|.+..++..++.++..+|+
T Consensus 92 ~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALE---------------------AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHH---------------------HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8887 88999999999999999999999999999999988764
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.63 E-value=1e-14 Score=117.13 Aligned_cols=124 Identities=19% Similarity=0.150 Sum_probs=117.1
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
.+|.+...++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+.++++++...|.+...+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 381 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 381 (546)
|.++. ..|++++|+.+|+++++.+|++..++..+|.++...|++
T Consensus 87 ~~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALS---------------------SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHH---------------------HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88887 899999999999999999999999999999999998876
No 138
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.62 E-value=3.5e-14 Score=114.61 Aligned_cols=106 Identities=27% Similarity=0.447 Sum_probs=70.8
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
.+|.+..++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...|.+...+..+
T Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 109 (136)
T 2fo7_A 30 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109 (136)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34445556666666666667777777777777666666666666777777777777777777777776666666666666
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
+.++. ..|++++|+..+++++..+|.
T Consensus 110 a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 110 GNAYY---------------------KQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHH---------------------TTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHH---------------------HHccHHHHHHHHHHHHccCCC
Confidence 66555 666677777777776666654
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.62 E-value=7.6e-15 Score=123.39 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
.++..++.+|.+++..|++++|+..|++++.++|++..+++.+|.+|..+|++++|+..|+++++++|++..+++.+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555555555555555555544444444444444
Q ss_pred HH
Q 009045 320 LL 321 (546)
Q Consensus 320 ~~ 321 (546)
+.
T Consensus 89 ~~ 90 (164)
T 3sz7_A 89 RF 90 (164)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 140
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.61 E-value=7.4e-16 Score=152.07 Aligned_cols=153 Identities=12% Similarity=0.180 Sum_probs=137.0
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---------------hHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLG 283 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la 283 (546)
...+++++|+..|++++...|..+..+..+|.+++..|+|++|+..|++++.++|.+ ..++.++|
T Consensus 245 ~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 355677889999999999999999999999999999999999999999999999998 68999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 284 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
.+|..+|++++|+.+|++++.++|++..+++.+|.++. ..|++++|+..|+++++++|+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~---------------------~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL---------------------LMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999888 899999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHH-HHHHH
Q 009045 364 AAHIWANLANAYYLTGDHRSSGKC-LEKAA 392 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~-~~~al 392 (546)
+..++..++.++..++++++|... |++++
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888753 44444
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.6e-14 Score=115.43 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=105.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 273 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 273 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
|..+..+..+|..++..|++++|+..|+++++++|++..++..+|.++. ..|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~---------------------~~~~~~~A~~ 59 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA---------------------KLMSFPEAIA 59 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---------------------HhcCHHHHHH
Confidence 3456789999999999999999999999999999999999999999988 8999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCChhHHHHHHH
Q 009045 353 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE------PNCMSTRYAVAV 407 (546)
Q Consensus 353 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~ 407 (546)
.|+++++++|+++.+++.+|.++..+|++++|+..|+++++++ |++..++..+..
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 887766655543
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.61 E-value=1.7e-14 Score=121.25 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=110.2
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
++.++..++.+|.+++..|++++|+..|+++++++|++..++..+|.++. ..|++++|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~---------------------~~g~~~~A~ 65 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS---------------------ASGQHEKAA 65 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH---------------------HccCHHHHH
Confidence 45567899999999999999999999999999999999999999999888 899999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 352 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 352 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
.+|+++++++|++..+|+.+|.+|..+|++++|+.+|+++++++|++...++..++..+
T Consensus 66 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 66 EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998777666443
No 143
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.61 E-value=1.8e-13 Score=123.85 Aligned_cols=152 Identities=8% Similarity=-0.023 Sum_probs=121.8
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--NNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
|+..+++.+...+.....+..+|.++...|++++|+..+.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78888888877666677778999999999999999999999999987 8899999999999999999999999999999
Q ss_pred hCCC----CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 009045 305 KDQN----HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 380 (546)
Q Consensus 305 ~~p~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 380 (546)
.+|+ +......++..+... ....+++.+|...|+++.+..|+.......+. ++..+|+
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l-----------------~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~ 226 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKF-----------------ATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRN 226 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHH-----------------HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTC
T ss_pred cCccccccchHHHHHHHHHHHHH-----------------HhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCC
Confidence 9883 233445555443211 11233899999999999998887222222233 8999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 009045 381 HRSSGKCLEKAAKLEP 396 (546)
Q Consensus 381 ~~~A~~~~~~al~~~p 396 (546)
+++|...++.+++..|
T Consensus 227 ~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998887743
No 144
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.59 E-value=6.3e-14 Score=123.37 Aligned_cols=140 Identities=12% Similarity=0.171 Sum_probs=121.9
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+..|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++.++|++..+++.+|.+|..+|++++|+..
T Consensus 17 ~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 93 (213)
T 1hh8_A 17 ADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 93 (213)
T ss_dssp HHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHH
Confidence 45677799999999996 33 6789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCH----------------HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC
Q 009045 299 FQDLILKDQNHP----------------AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362 (546)
Q Consensus 299 ~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 362 (546)
|+++++..|.+. .++..+|.++. ..|++++|+..|+++++++|
T Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA---------------------KKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHcCc
Confidence 999999888776 78888888877 89999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 363 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 363 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
++. .+..++|+..+.+....
T Consensus 153 ~~~------------~~~~~~a~~~~~~~~~~ 172 (213)
T 1hh8_A 153 EPR------------HSKIDKAMECVWKQKLY 172 (213)
T ss_dssp SGG------------GGHHHHHHHHHHTTCCC
T ss_pred ccc------------cchHHHHHHHHHhcccc
Confidence 863 24455666666554443
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.58 E-value=5.2e-14 Score=130.63 Aligned_cols=177 Identities=12% Similarity=0.023 Sum_probs=138.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHH
Q 009045 146 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 225 (546)
Q Consensus 146 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 225 (546)
.+|.....+...+..+...|++++|+..++++++..+.. +........++.+|.++ ...|+++
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~-----------~~~~~~~ 132 (293)
T 2qfc_A 70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH------PEFQQFLQWQYYVAAYV-----------LKKVDYE 132 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC------HHHHHHHHHHHHHHHHH-----------HTSSCHH
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC------hhHHHHHHHHHHHHHHH-----------hcCCCHH
Confidence 445566778889999999999999999999999975432 22222334444555544 4556679
Q ss_pred HHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCChHHHHHHHHhhH---hcCCCCh----HHHHHHHHHHHHcCCH
Q 009045 226 EILSKLKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLL---AVDPNNC----DCIGNLGIAYFQSGDM 292 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~ 292 (546)
+|+..|++++...+.. ..++..+|.+|...|++++|+.+|++++ +..|++. .+++++|.+|..+|++
T Consensus 133 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 9999999999765433 5689999999999999999999999999 4455543 6899999999999999
Q ss_pred HHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHH-HHHHHHHHhc
Q 009045 293 EQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA-KECLLAALKA 360 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~ 360 (546)
++|+.+|++++.+.+.. ..++..+|.++. ..|++++| ..+|++++.+
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~---------------------~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLR---------------------KLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHH---------------------HTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH---------------------HcCCcHHHHHHHHHHHHHH
Confidence 99999999999875431 445566666655 99999999 7889998865
No 146
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.58 E-value=4.2e-16 Score=153.87 Aligned_cols=164 Identities=17% Similarity=0.202 Sum_probs=136.7
Q ss_pred hhhHHHHHHHHHH----HHhcCcccHHHHHHHHHHH------------HHcCChHHHHHHHHhhHhcCCCChHHHHHHHH
Q 009045 221 PEELEEILSKLKE----SMQSDTRQAVVWNTLGLIL------------LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI 284 (546)
Q Consensus 221 ~~~~~~A~~~~~~----al~~~p~~~~~~~~l~~~~------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 284 (546)
...++.|+..+++ ++.++|.. +|...|... ...+++++|+..|++++...|.....+..+|.
T Consensus 199 ~~~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~ 276 (457)
T 1kt0_A 199 PIGIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGT 276 (457)
T ss_dssp CHHHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHH
Confidence 3467888888887 78888864 444444322 24567889999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHH
Q 009045 285 AYFQSGDMEQSAKCFQDLILKDQNH---------------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 285 ~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
+++..|++++|+..|+++++++|.+ ..++.++|.++. +.|++++
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~---------------------~~g~~~~ 335 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL---------------------KLREYTK 335 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH---------------------HTTCHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH---------------------HhcCHHH
Confidence 9999999999999999999999998 466777777666 9999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 350 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.
T Consensus 336 A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 336 AVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988766555544
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.58 E-value=2.2e-14 Score=133.14 Aligned_cols=156 Identities=12% Similarity=0.096 Sum_probs=127.8
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHH------HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAV------VWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAY 286 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 286 (546)
+..|++++|+..+++++...+..+. .+..+|.++...|++++|+.+|++++.+.+.. ..++..+|.+|
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 4678889999999999987765544 34458999999999999999999999975433 33799999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCC---CC----HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 287 FQSGDMEQSAKCFQDLILKDQ---NH----PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
..+|++++|+.+|+++++... .+ ..++.++|.++. ..|++++|+.+++++++
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~---------------------~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY---------------------LDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH---------------------HHhHHHHHHHHHHHHHH
Confidence 999999999999999996422 22 234455555554 99999999999999998
Q ss_pred cCCCC------HHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcC
Q 009045 360 ADPKA------AHIWANLANAYYLTGD-HRSSGKCLEKAAKLE 395 (546)
Q Consensus 360 ~~p~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 395 (546)
+.+.. +.++..+|.+|..+|+ +++|+.+|++++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 86443 7899999999999995 699999999999764
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.57 E-value=1.4e-13 Score=109.34 Aligned_cols=121 Identities=31% Similarity=0.445 Sum_probs=103.2
Q ss_pred Cccc-HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 238 DTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 238 ~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
+|.. ..+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|++++...|.+...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4444 678888999999999999999999999998898888999999999999999999999999999888888888888
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 379 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 379 (546)
+.++. ..|++++|+..|+++++.+|.+..++..+|.++...|
T Consensus 84 a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYY---------------------KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHH---------------------HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 87777 7888999999999999999988888888888887654
No 149
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.57 E-value=1.7e-13 Score=115.18 Aligned_cols=129 Identities=15% Similarity=0.025 Sum_probs=111.8
Q ss_pred cchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhc
Q 009045 337 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS 416 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~ 416 (546)
+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++..+|++..+++
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------- 85 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY------------- 85 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH-------------
Confidence 3445559999999999999999999999999999999999999999999999999999987654333
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHH
Q 009045 417 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVA 496 (546)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A 496 (546)
.+|.++...|++++|
T Consensus 86 -----------------------------------------------------------------~~a~~~~~~~~~~~A 100 (166)
T 1a17_A 86 -----------------------------------------------------------------RRAASNMALGKFRAA 100 (166)
T ss_dssp -----------------------------------------------------------------HHHHHHHHTTCHHHH
T ss_pred -----------------------------------------------------------------HHHHHHHHhccHHHH
Confidence 334478888999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHHhcc
Q 009045 497 KECLLAALKADPKAAHIWANLANA--YYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 497 ~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+.+|+++++++|++..++..++.+ +...|++++|+..++++..++.+
T Consensus 101 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 101 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 999999999999999988555555 88899999999999999888754
No 150
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.57 E-value=2.3e-14 Score=115.60 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------C-----HHHHHHHHHHHHHhhCccccccccccccchHHHhhcC
Q 009045 279 IGNLGIAYFQSGDMEQSAKCFQDLILKDQN-------H-----PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 346 (546)
Q Consensus 279 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (546)
+..+|..++..|+|++|+..|+++++++|+ + ..+|.++|.++. .+|+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~---------------------~Lgr 72 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA---------------------GLRS 72 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH---------------------HTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH---------------------HCCC
Confidence 334444444444444444444444444444 2 337777777776 9999
Q ss_pred HHHHHHHHHHHHhc-------CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 347 VNVAKECLLAALKA-------DPKAAHIW----ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 347 ~~~A~~~~~~al~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
+++|+.+|++++++ +|++..+| +++|.++..+|++++|+..|+++++++|++....
T Consensus 73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999999999 99999999 9999999999999999999999999999886544
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.56 E-value=3.3e-14 Score=112.31 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
..++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~- 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT- 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
..|++++|+..|+++++.+|++..
T Consensus 97 --------------------~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 --------------------NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp --------------------HHHHHHHHHHHHHHHHC-------
T ss_pred --------------------HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 889999999999999999987643
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.56 E-value=1.9e-14 Score=116.02 Aligned_cols=109 Identities=9% Similarity=-0.012 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-------NCD-----CIGNLGIAYFQSGDMEQSAKCFQDLILK---- 305 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 305 (546)
+..+..+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567889999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 306 ---DQNHPAAL----INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 306 ---~p~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
+|++..+| +++|.++. .+|++++|+.+|+++++++|++..+...+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~---------------------~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALD---------------------GLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999 99998888 99999999999999999999865444333
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.56 E-value=4.9e-14 Score=114.38 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=70.3
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
+|.++..++.+|.+++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++++|++..+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHH
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-----AAHIWANLANAY 375 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~ 375 (546)
.++. ..|++++|+..|+++++++|+ +..+...+..+.
T Consensus 85 ~~~~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQL---------------------EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHH---------------------HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 5555 556666666666666665555 444444444433
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.56 E-value=4.7e-14 Score=112.52 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=95.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 354 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 354 (546)
.+.++.++|.+++..|+|++|+.+|+++++++|++..++.++|.++. ..|++++|+..|
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~---------------------~~~~~~~A~~~~ 65 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF---------------------EEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH---------------------HhhhHHHHHHHH
Confidence 35678899999999999999999999999999999999999999988 899999999999
Q ss_pred HHHHhcCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 355 LAALKADPKA-------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 355 ~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+++++++|++ ..++..+|.++..+|++++|+.+|++++...|+
T Consensus 66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 9999998764 458899999999999999999999999999886
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=1.7e-14 Score=125.43 Aligned_cols=147 Identities=14% Similarity=0.041 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------------
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP------------ 310 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------ 310 (546)
......+......|++++|.+.+.......+.....+..+|..++..|++++|+..|++++.+.|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84 (198)
T ss_dssp -----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred ccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 34445667778889999999999888777777888999999999999999999999999999999887
Q ss_pred ----HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH
Q 009045 311 ----AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 386 (546)
Q Consensus 311 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 386 (546)
.++..+|.++. ..|++++|+.+++++++++|.+..+++.+|.+|..+|++++|+.
T Consensus 85 ~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 85 NIEISCNLNLATCYN---------------------KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp HHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHH
Confidence 66666666666 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHH
Q 009045 387 CLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 387 ~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
.|+++++++|++..++..++....
T Consensus 144 ~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 144 NLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHH
Confidence 999999999999988887766433
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=5.7e-14 Score=110.88 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++. ..|++++|+..|++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA---------------------ENEKDGLAIIALNH 76 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999988 89999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 357 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 357 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
+++++|+++.++..+|.++...|++++|+..|+++++++|++.
T Consensus 77 al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999999999999999999999999764
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.54 E-value=8e-14 Score=121.60 Aligned_cols=160 Identities=11% Similarity=0.123 Sum_probs=127.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc------CCCChHHHHHHHHHHHHcCC
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGD 291 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 291 (546)
++..|++++|...++......+....++..+|.++...|++++|+..|++++.+ .+....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356788999999666555544467889999999999999999999999999984 44557889999999999999
Q ss_pred HHHHHHHHHHHHhh---CCCCH----HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-
Q 009045 292 MEQSAKCFQDLILK---DQNHP----AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK- 363 (546)
Q Consensus 292 ~~~A~~~~~~al~~---~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 363 (546)
+++|+.++++++.+ .+++. .++..+|.++. ..|++++|+.++++++.+.+.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVAL---------------------HFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999988 44332 33455555554 999999999999999976322
Q ss_pred -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 364 -----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 364 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
...++..+|.++...|++++|+.++++++++....
T Consensus 141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 23457899999999999999999999999875543
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=2.9e-13 Score=106.26 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+...+..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777776666665
Q ss_pred HhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009045 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375 (546)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 375 (546)
..|++++|+..|+++++.+|++..++..++.+.
T Consensus 84 ---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 ---------------------FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ---------------------HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 667777777777777777777777776666554
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.54 E-value=4.6e-14 Score=118.28 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhc------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAV------------------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
.+..+..+|..++..|+|++|+..|++++.+ +|.+..++.++|.+|..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567778888888888888888888888887 3344445555555555555555555555555
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHH
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-HIWANLANAY 375 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~ 375 (546)
+.++|++..+++.+|.++. ..|++++|+..|++++.++|++. .+...++.+.
T Consensus 90 l~~~p~~~~a~~~~g~~~~---------------------~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARI---------------------AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHH---------------------HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5555555555555554444 44555555555555555555544 3343444333
No 160
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.53 E-value=1.3e-13 Score=127.88 Aligned_cols=170 Identities=12% Similarity=0.035 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHH
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 232 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~ 232 (546)
.+...+..+...|++++|+..++++++..+. .++.......+..++..+ ...+++++|+.+|+
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~------~~~~~~~~~~~~~l~~~~-----------~~~~~~~~Ai~~~~ 139 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY------HPEFQQFLQWQYYVAAYV-----------LKKVDYEYCILELK 139 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCC------CHHHHHHHHHHHHHHHHH-----------TTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccC------ChHHHHHHHHHHHHHHHH-----------HcccCHHHHHHHHH
Confidence 3445578889999999999999999986433 233333334455566554 45566799999999
Q ss_pred HHHhcCccc------HHHHHHHHHHHHHcCChHHHHHHHHhhHhc-------CCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 233 ESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLLAV-------DPNNCDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 233 ~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
+++...+.. ..++..+|.+|...|++++|+.+|+++++. .+....+++++|.+|..+|++++|+.++
T Consensus 140 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~ 219 (293)
T 3u3w_A 140 KLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp HHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999864432 347999999999999999999999999953 2233568999999999999999999999
Q ss_pred HHHHhhCCCC------HHHHHHHHHHHHHhhCccccccccccccchHHHhhc-CHHHHHHHHHHHHhc
Q 009045 300 QDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS-AVNVAKECLLAALKA 360 (546)
Q Consensus 300 ~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~ 360 (546)
++++++.+.. ..++..+|.++. ..| .+++|+.+|++++.+
T Consensus 220 ~~al~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 220 NKAIEISCRINSMALIGQLYYQRGECLR---------------------KLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTBCTTHHHHHHHHHHHHH---------------------HTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHH---------------------HhCCcHHHHHHHHHHHHHH
Confidence 9999876543 456666666666 888 579999999999875
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.52 E-value=7.1e-14 Score=138.39 Aligned_cols=135 Identities=7% Similarity=0.130 Sum_probs=117.0
Q ss_pred cccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 206 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
.+..+|.. ++..|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|+++.+++++|.+
T Consensus 8 ~~~~lg~~----~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 8 ELKTQAND----YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp TSSSSSSS----TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHH----HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34445555 67888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHH----------
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL---------- 355 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~---------- 355 (546)
|..+|++++|++.|+++++++|++..++..++.+.. +...|++++|++.++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~-------------------~~~~g~~~~A~~~~~~~~~~~~~~~ 144 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK-------------------IVKQKAFERAIAGDEHKRSVVDSLD 144 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH-------------------HHHHHHHCCC------CCSTTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------------HHHHHHHHHHhccccccchhHhhhh
Confidence 999999999999999999999999999988888732 127899999999999
Q ss_pred -HHHhcCCC
Q 009045 356 -AALKADPK 363 (546)
Q Consensus 356 -~al~~~p~ 363 (546)
+++.+.|.
T Consensus 145 ~~al~~~~~ 153 (477)
T 1wao_1 145 IESMTIEDE 153 (477)
T ss_dssp TSSCCCCTT
T ss_pred hhhcccccc
Confidence 77777765
No 162
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.52 E-value=6.6e-13 Score=120.24 Aligned_cols=240 Identities=10% Similarity=0.032 Sum_probs=162.3
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+-.|+|..++....+.-..++ ....+.+.++|+.+|++... .. .+....+...++..+. ++ |+..
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~--~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~--~~---a~~~ 88 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTD--NTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD--TK---NIEE 88 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCC--HHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT--TT---CCHH
T ss_pred HHhhHHHHHHHHHHhcCccch--HHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc--cc---HHHH
Confidence 446788999985544322222 34667778889999998852 11 2222334444454442 32 8899
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYY 376 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~ 376 (546)
+++.+...+.....+..+|.++. ..|++++|+.++.+.+..+| .+.+++..++.++.
T Consensus 89 l~~l~~~~~~~~~~~~~la~i~~---------------------~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L 147 (310)
T 3mv2_B 89 LENLLKDKQNSPYELYLLATAQA---------------------ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL 147 (310)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence 99988876666666777777776 88999999999999999987 88999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 009045 377 LTGDHRSSGKCLEKAAKLEPN----CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 452 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 452 (546)
.+|+.+.|.+.++++.+.+|+ +......++ -+
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La--------------------------------------------ea 183 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA--------------------------------------------ES 183 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------------------------------------------HH
T ss_pred HCCCHHHHHHHHHHHHhcCccccccchHHHHHHH--------------------------------------------HH
Confidence 999999999999999999883 111222221 12
Q ss_pred HHHHhcc--cHHHHHHHHHhhccchhh----hHHhhHHHHHHHhccHHHHHHHHHHHHHh----------CCCCHHHHHH
Q 009045 453 AVQKTHH--EVAAAFETEENELSKMEE----CAGAGESAFLDQASAVNVAKECLLAALKA----------DPKAAHIWAN 516 (546)
Q Consensus 453 ~~~~~~~--~~~~A~~~~~~~l~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~ 516 (546)
++....| ++.+|+..|.+.....+. ..+++ ++.++|++++|...++.+++. +|++++++.+
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 2222223 666777777665443331 22222 677777777777777766655 4667777777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 517 LANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 517 lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+..+...+|+ +|.++++++.+..|+
T Consensus 261 ~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 261 QITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 7777777776 667777777666554
No 163
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.52 E-value=3.2e-13 Score=108.72 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=110.3
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
.|....+++.+|.++...|++++|+..|++++..+|.+..++..+|.++. ..|++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~ 70 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT---------------------KLLEFQLAL 70 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT---------------------TTTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH---------------------HhccHHHHH
Confidence 45678899999999999999999999999999999999999999998887 899999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 352 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 352 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
.+++++++.+|.+..++..+|.++...|++++|+.+|+++++.+|.+..++..++....
T Consensus 71 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888887776543
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.52 E-value=4.5e-13 Score=108.58 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=101.2
Q ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHH
Q 009045 270 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 270 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
..+|.++..++.+|.+++..|++++|+..|++++..+|.+..++..+|.++. ..|++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~---------------------~~~~~~~ 61 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL---------------------KMQQPEQ 61 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH---------------------HhcCHHH
Confidence 3467889999999999999999999999999999999999999999999888 8999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 350 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
|+..|+++++++|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 62 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 62 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999999999999999999999999999987
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4e-13 Score=110.46 Aligned_cols=120 Identities=17% Similarity=0.123 Sum_probs=105.3
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 313 (546)
..|.+...++.+|.++...|++++|+..|+++++.+|++ ..++..+|.+|...|++++|+..|++++..+|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457788899999999999999999999999999999987 88899999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
+.+|.++. ..|++++|+.+|+++++++|++..++..++.+...
T Consensus 103 ~~~a~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALE---------------------KLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHH---------------------HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 88888877 88889999999999999999988888887776543
No 166
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.51 E-value=5.9e-14 Score=112.90 Aligned_cols=98 Identities=18% Similarity=0.264 Sum_probs=89.9
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCh----------HHHHHHHHhhHhcCCCChHHHHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL----------QSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 288 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 288 (546)
-+.+.|++|+..++++++++|+++.+|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999876 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 289 SG-----------DMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 289 ~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
+| ++++|+.+|+++++++|++...+..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 85 89999999999999999987654433
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.51 E-value=2e-14 Score=135.84 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=94.8
Q ss_pred hcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh-----------------HHHHHHHHHHHHcCCHHHHHHH
Q 009045 236 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----------------DCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 236 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+..+..+..+..+|.+++..|+|++|+..|++++.+.|++. .+++++|.+|..+|++++|+.+
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34455677899999999999999999999999999999876 4899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHH
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA-YYL 377 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~ 377 (546)
|+++++++|++..+++.+|.++. ..|++++|+..|+++++++|++..++..++.+ ...
T Consensus 253 ~~~al~~~p~~~~a~~~lg~a~~---------------------~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 253 CNIVLTEEEKNPKALFRRGKAKA---------------------ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999888 89999999999999999999999999999988 455
Q ss_pred cCChHHHHHHHHHHHhcCCCCh
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~ 399 (546)
.+..+++...|.+++...|++.
T Consensus 312 ~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHhhCCCCCCC
Confidence 6778889999999999998765
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.50 E-value=4.7e-13 Score=112.06 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHhhCcccccccccccc
Q 009045 276 CDCIGNLGIAYFQSGDMEQSAKCFQDLILK------------------DQNHPAALINYAALLLCKYGSVLAGAGANTGE 337 (546)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 337 (546)
+..+..+|..++..|++++|+..|.+++.+ +|.+..++.++|.++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~---------------- 74 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL---------------- 74 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 567899999999999999999999999998 6666677777777776
Q ss_pred chHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh-hHHHHHHH
Q 009045 338 GACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM-STRYAVAV 407 (546)
Q Consensus 338 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~ 407 (546)
..|++++|+..++++++++|.++.+++.+|.+|..+|++++|+..|++++.++|++. .....+..
T Consensus 75 -----~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 75 -----NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp -----HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred -----hcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988 44444443
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.50 E-value=6.2e-15 Score=146.00 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=126.0
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
..+..+..+|.++...|++++|+..|+++++++|++..++.++|.+|..+|++++|+..|+++++++|++..++..+|.+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCChHHHHHHHH--------
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA--YYLTGDHRSSGKCLE-------- 389 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~-------- 389 (546)
+. ..|++++|+..|+++++++|++..++..++.+ +...|++++|+..++
T Consensus 84 ~~---------------------~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 142 (477)
T 1wao_1 84 NM---------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 142 (477)
T ss_dssp HH---------------------HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTC
T ss_pred HH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhh
Confidence 88 89999999999999999999999999999998 889999999999999
Q ss_pred ---HHHhcCCCChhH
Q 009045 390 ---KAAKLEPNCMST 401 (546)
Q Consensus 390 ---~al~~~p~~~~~ 401 (546)
+++.+.|+....
T Consensus 143 ~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 143 LDIESMTIEDEYSGP 157 (477)
T ss_dssp CTTSSCCCCTTCCSC
T ss_pred hhhhhcccccccccc
Confidence 888888776433
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.50 E-value=3.2e-13 Score=104.94 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=85.1
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++. ..|++++|+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~ 60 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY---------------------NLERYEEAV 60 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH---------------------HccCHHHHH
Confidence 56777777888888888888888888888888888887777777777776 777888888
Q ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCC
Q 009045 352 ECLLAALKADPK--AAHIWANLANAYYLT-GDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 352 ~~~~~al~~~p~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~ 398 (546)
.+|+++++..|. +..++..+|.++... |++++|+.++++++...|.+
T Consensus 61 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 888888888888 888888888888888 88888888888888887765
No 171
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.49 E-value=1.3e-12 Score=102.45 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=105.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 354 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 354 (546)
.+..++.+|.++...|++++|+..|++++..+|.+...+..+|.++. ..|++++|+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~ 61 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA---------------------KKGDYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH---------------------hhccHHHHHHHH
Confidence 35788999999999999999999999999999999999999998887 899999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 355 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 355 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
+++++.+|.++.++..+|.++...|++++|+..|+++++.+|++...+..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888776654
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.49 E-value=8.1e-13 Score=105.79 Aligned_cols=111 Identities=16% Similarity=0.252 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYA 317 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~ 317 (546)
.++.+|.+++..|++++|+..|++++..+|++. .+++.+|.++...|++++|+..|++++..+|++ ..+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345666666666666666666666666666665 566666666666666666666666666666666 55555555
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 375 (546)
.++. ..|++++|+..|+++++..|++..+...+..+-
T Consensus 84 ~~~~---------------------~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 84 LSQY---------------------GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHH---------------------HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5555 566666666666666666666655554444443
No 173
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.48 E-value=8.3e-13 Score=105.79 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=110.2
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHH
Q 009045 271 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 350 (546)
Q Consensus 271 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 350 (546)
.+|.+...+..+|.++...|++++|+..|++++...|.+..++..+|.++. ..|++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A 65 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS---------------------KLGNYAGA 65 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------HhhchHHH
Confidence 345667899999999999999999999999999999999999999988887 89999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 351 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 351 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
+.++++++...|.+..++..+|.++...|++++|+.+|+++++.+|++...+..++....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888877766443
No 174
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.48 E-value=2.8e-12 Score=101.67 Aligned_cols=116 Identities=31% Similarity=0.499 Sum_probs=106.6
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHH
Q 009045 272 DPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 350 (546)
Q Consensus 272 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 350 (546)
+|.. ..+++.+|.++...|++++|+..|++++...|.+...+..++.++. ..|++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A 62 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY---------------------KQGDYDEA 62 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH---------------------HhCCHHHH
Confidence 4555 7889999999999999999999999999999999999998888887 89999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009045 351 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 408 (546)
Q Consensus 351 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 408 (546)
+..|++++...|.+..++..+|.++...|++++|+..|++++..+|++..++..++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888777664
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.48 E-value=8.3e-14 Score=131.62 Aligned_cols=163 Identities=15% Similarity=0.070 Sum_probs=102.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhh
Q 009045 144 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEE 223 (546)
Q Consensus 144 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 223 (546)
+...+..+..++.+|.++...|++++|+..|++++.+.|.+. . +...++
T Consensus 172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------------~------------------~~~~~~ 220 (338)
T 2if4_A 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------------M------------------FQLYGK 220 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------------H------------------HTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------------h------------------hhhccc
Confidence 344455678899999999999999999999999999865431 0 123455
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
+.++...+. ..+++++|.+|..+|+|++|+.+|+++++++|++..+++.+|.+|..+|++++|+..|++++
T Consensus 221 ~~~~~~~l~---------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 221 YQDMALAVK---------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHHHH---------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566654442 24889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 304 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 304 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
+++|++..++..++.+... ..+..+++...|.+++...|.++.
T Consensus 292 ~l~p~~~~a~~~L~~l~~~--------------------~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 292 KYAPDDKAIRRELRALAEQ--------------------EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp C--------------------------------------------------------------
T ss_pred HHCCCCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9999999998888877542 566788899999999999887653
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.48 E-value=5.9e-13 Score=106.73 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=103.8
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-------PAA 312 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 312 (546)
..+..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++...|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999998876 666
Q ss_pred HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009045 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 379 (546)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 379 (546)
+..+|.++. ..|++++|+.+|+++++..| +...+..++.+....+
T Consensus 82 ~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 82 YARIGNSYF---------------------KEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 666666665 88999999999999999888 5778888877766544
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-12 Score=107.30 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=107.4
Q ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhCccccccccccccchHHHhhcC
Q 009045 270 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 346 (546)
Q Consensus 270 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (546)
...|.+...++.+|..+...|++++|+..|+++++.+|++ ...+..++.++. ..|+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~ 80 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL---------------------KLED 80 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH---------------------HTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH---------------------HHcc
Confidence 4467889999999999999999999999999999999987 777888887777 8999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 347 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 347 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
+++|+..|+++++.+|++..+++.+|.++...|++++|+.+|++++.++|++..++..++.
T Consensus 81 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 81 YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999877765543
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.47 E-value=3.1e-13 Score=105.01 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=98.8
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALIN 315 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 315 (546)
+|+++.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999 9999998
Q ss_pred HHHHHHHhhCccccccccccccchHHHhh-cCHHHHHHHHHHHHhcCCCC
Q 009045 316 YAALLLCKYGSVLAGAGANTGEGACLDQA-SAVNVAKECLLAALKADPKA 364 (546)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~ 364 (546)
++.++. .. |++++|++++++++...|.+
T Consensus 82 l~~~~~---------------------~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALR---------------------YIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHT---------------------TCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHH---------------------HHhCCHHHHHHHHHHHhhcccCC
Confidence 888887 89 99999999999999998864
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.45 E-value=1.5e-12 Score=124.34 Aligned_cols=130 Identities=11% Similarity=0.056 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
+..+..+|..+...|++++|+..|++++++.+... ....
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------------------------------~~~~ 261 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------------------------------AAAE 261 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------------------------------HHSC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------------------------------cccC
Confidence 56789999999999999999999999999743210 1112
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
..+....+|.+..++.++|.++..+|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 262 ~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 262 DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 34445577888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 009045 311 AALINYAALLL 321 (546)
Q Consensus 311 ~~~~~l~~~~~ 321 (546)
.++..++.++.
T Consensus 342 ~~~~~l~~~~~ 352 (370)
T 1ihg_A 342 AIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888876
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=2.9e-12 Score=126.11 Aligned_cols=138 Identities=12% Similarity=-0.014 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----------------DCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
......|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++++.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566778888999999999999999999877643 35889999999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcC
Q 009045 306 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP------KAAHIWANLANAYYLTG 379 (546)
Q Consensus 306 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g 379 (546)
.+.......... +.. .+|.++...|++++|+.++++++...+ ....++..+|.+|...|
T Consensus 85 ~~~~~~~~~~~~-~~~--------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (434)
T 4b4t_Q 85 MMQFAKSKTVKV-LKT--------------LIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK 149 (434)
T ss_dssp HHTSCHHHHHHH-HHH--------------HHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHccchHHHHH-HHH--------------HHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence 766544322111 110 123344478899999999999887632 34678899999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 009045 380 DHRSSGKCLEKAAKLE 395 (546)
Q Consensus 380 ~~~~A~~~~~~al~~~ 395 (546)
+|.+|+..+++++...
T Consensus 150 ~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 150 QYKDSLALINDLLREF 165 (434)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 9999999999987653
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.45 E-value=3.2e-12 Score=102.30 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 353 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 353 (546)
.+++.+|.+++..|++++|+..|+++++.+|++. .+++.+|.++. ..|++++|+..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~---------------------~~~~~~~A~~~ 61 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY---------------------ATRNFQLAEAQ 61 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH---------------------HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH---------------------HhccHHHHHHH
Confidence 4678999999999999999999999999999988 78888888887 89999999999
Q ss_pred HHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 354 LLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 354 ~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
|+++++.+|++ +.+++.+|.++..+|++++|+..|++++...|++..+....
T Consensus 62 ~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 62 FRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 99999999999 89999999999999999999999999999999987665444
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.44 E-value=2.9e-13 Score=106.31 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 221 PEELEEILSKLKESMQS---DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.|++++|+..|+++++. +|+++.+++.+|.++...|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 57789999999999999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHH
Q 009045 298 CFQDLILKDQNHPAALI 314 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~ 314 (546)
.|++++...|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999999987654
No 183
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.44 E-value=4.6e-12 Score=110.28 Aligned_cols=124 Identities=18% Similarity=0.146 Sum_probs=97.0
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhhC
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD------QNHPAALINYAALLLCKYG 325 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~ 325 (546)
++..|++++|...++......+....++..+|.++...|++++|+.+|++++.+. +....++..+|.++.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~---- 77 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER---- 77 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH----
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH----
Confidence 3568999999996665555334678899999999999999999999999999853 333344555555554
Q ss_pred ccccccccccccchHHHhhcCHHHHHHHHHHHHhc---CC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 009045 326 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKA---DP----KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 396 (546)
..|++++|+.++++++.+ .+ ....++..+|.++...|++++|+.++++++.+.+
T Consensus 78 -----------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 78 -----------------MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp -----------------HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -----------------HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998 34 2356789999999999999999999999987643
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.44 E-value=9e-13 Score=125.77 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHh----------------cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLA----------------VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
+..+..+|..++..|++++|+..|+++++ .+|.+..++.++|.+|..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 56788999999999999999999999998 67777888999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 009045 306 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 385 (546)
Q Consensus 306 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 385 (546)
+|++..+++.+|.++. ..|++++|+..|+++++++|++..++..++.++..+++++++.
T Consensus 303 ~p~~~~a~~~lg~~~~---------------------~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQ---------------------GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888887 8888999999999999999999999999999988888887775
Q ss_pred HH
Q 009045 386 KC 387 (546)
Q Consensus 386 ~~ 387 (546)
..
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 185
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.43 E-value=4.5e-13 Score=107.77 Aligned_cols=103 Identities=10% Similarity=0.093 Sum_probs=80.9
Q ss_pred HHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 253 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM----------EQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 253 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
.+.++|++|++.++++++++|+++.+|+++|.++..++++ ++|+..|+++++++|++..+++++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999875 599999999999999999999999999983
Q ss_pred hhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
.+.- ........|++++|+.+|+++++++|++.
T Consensus 93 lg~l----------~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFL----------TPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHH----------CCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hccc----------CcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 2100 00000112467777777777777777653
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.42 E-value=3.7e-13 Score=105.70 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=79.7
Q ss_pred HcCChHHHHHHHHhhHhc---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccc
Q 009045 254 KSGRLQSSISVLSSLLAV---DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 330 (546)
Q Consensus 254 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 330 (546)
.+|++++|+..|++++++ +|++..++..+|.+|..+|++++|+.+|+++++.+|++..++..+|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--------- 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY--------- 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH---------
Confidence 468888899999999988 58888888999999999999999999999999988988888888888877
Q ss_pred cccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009045 331 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374 (546)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 374 (546)
..|++++|+..|++++...|+++.+......+
T Consensus 73 ------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 73 ------------NLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp ------------HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred ------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 88888999999998888888887765433333
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.39 E-value=2.5e-12 Score=107.37 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=113.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH----- 309 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 309 (546)
...++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 35688999999999999999999999999885533 2588999999999999999999999999876543
Q ss_pred -HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChH
Q 009045 310 -PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 310 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~ 382 (546)
...+..+| .++...|++++|+.+++++++..+. ...++..+|.++...|+++
T Consensus 88 ~~~~~~~l~---------------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 146 (164)
T 3ro3_A 88 EAQSCYSLG---------------------NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146 (164)
T ss_dssp HHHHHHHHH---------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHH---------------------HHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence 23344444 4445999999999999999987432 3567899999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 009045 383 SSGKCLEKAAKLEPN 397 (546)
Q Consensus 383 ~A~~~~~~al~~~p~ 397 (546)
+|+.++++++++...
T Consensus 147 ~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 147 QAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987554
No 188
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.38 E-value=4.1e-10 Score=111.60 Aligned_cols=178 Identities=8% Similarity=-0.024 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHH
Q 009045 347 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWA 426 (546)
Q Consensus 347 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 426 (546)
.......|++++...|..+.+|...+..+...|+.++|...|++++.. |.+...+...+.. .+. . ..+.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~--~e~---~---~~~~-- 263 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV--MDE---E---AVYG-- 263 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH--TTC---T---HHHH--
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh--cch---h---HHHH--
Confidence 456778999999999999999999999999999999999999999999 9987666544332 000 0 0011
Q ss_pred HHHHHHHHhcCC------CCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccch-hhhHHhhHHHHHHHhc-cHHHHHH
Q 009045 427 GNEMASILREGD------PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM-EECAGAGESAFLDQAS-AVNVAKE 498 (546)
Q Consensus 427 ~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~la~~~~~~g-~~~~A~~ 498 (546)
.+........ ........+|...+......+..+.|...|.++..+. ....|...|.+-...+ +.+.|..
T Consensus 264 --~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 264 --DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp --HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred --HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHH
Confidence 1111100000 0111234578888888888888999999988872221 2234545555555555 5899999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009045 499 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 537 (546)
Q Consensus 499 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (546)
.|+.+++..|+.+..|...+......|+.+.|...|+++
T Consensus 342 ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 342 IFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988988888888888778888888888887775
No 189
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.38 E-value=8.3e-12 Score=99.87 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=101.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 354 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 354 (546)
.+..+..+|.++...|++++|+..|++++..+|.+..++..+|.++. ..|++++|+.+|
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~ 61 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF---------------------EKGDYNKCRELC 61 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HhccHHHHHHHH
Confidence 46789999999999999999999999999999999999999988887 899999999999
Q ss_pred HHHHhcCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 355 LAALKADPKA-------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 355 ~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
++++...|.+ ..++..+|.++...|++++|+.+|+++++..| +......++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 120 (131)
T 1elr_A 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 9999998877 89999999999999999999999999999998 4555554443
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.37 E-value=2e-11 Score=120.08 Aligned_cols=225 Identities=12% Similarity=0.126 Sum_probs=166.2
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHH
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAV 171 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 171 (546)
.++..+.+.|++..++ ..|.+++...+.........+.. ....... ..++..+|.+|...|++++|+
T Consensus 9 ~~a~~l~~~~~y~eA~-~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~----------~~al~~l~~~y~~~~~~~~a~ 75 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAE-QVYLSLLDKDSSQSSAAAGASVD--DKRRNEQ----------ETSILELGQLYVTMGAKDKLR 75 (434)
T ss_dssp HHHHHHHHHTCHHHHH-HHHHHHHHSCCCSSSBSSSSSBC--SHHHHHH----------HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHCCCHHHHH-HHHHHHHhhCcccchhHHHHHHH--HHHhhhH----------HHHHHHHHHHHHHCCCHHHHH
Confidence 4677788899999988 99999999998876666666555 2222222 245689999999999999999
Q ss_pred HHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCc------ccHHHH
Q 009045 172 SSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT------RQAVVW 245 (546)
Q Consensus 172 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~ 245 (546)
++|.+++...+... .......+...++.++. ..|++++|+.++++++...+ ....++
T Consensus 76 ~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~-----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 76 EFIPHSTEYMMQFA------KSKTVKVLKTLIEKFEQ-----------VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHTHHHHHTSC------HHHHHHHHHHHHHHHCS-----------CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHHHHcc------chHHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 99999999865431 11122233444555443 44556999999999987533 346789
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
..+|.+|...|+|++|+..+++++.. .+....++..+|.+|..+|++++|...|++++...+.........+.+
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 99999999999999999999998875 233467899999999999999999999999998754332222222333
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 360 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 360 (546)
+. ..|.++...+++.+|..+|.++++.
T Consensus 219 ~~--------------~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 219 DL--------------MSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HH--------------HHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HH--------------HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 22 1245555899999999999999875
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.36 E-value=5.4e-12 Score=105.27 Aligned_cols=141 Identities=17% Similarity=0.030 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
..++..+|.++...|++++|+.+|++++++.+.. ++....+.++..+|.++.. .|++++|+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~l~~~~~~-----------~g~~~~A~~~ 71 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------GDKAAERIAYSNLGNAYIF-----------LGEFETASEY 71 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHH-----------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh------CCchHHHHHHHHHHHHHHH-----------cCCHHHHHHH
Confidence 5688999999999999999999999999987642 2223334566667776644 4556999999
Q ss_pred HHHHHhcCccc------HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC------ChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 231 LKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN------NCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 231 ~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
++++++..+.. ..++..+|.++...|++++|+..+++++.+.+. ...++..+|.++...|++++|+.+
T Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 151 (164)
T 3ro3_A 72 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 151 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999876543 668899999999999999999999999987332 256789999999999999999999
Q ss_pred HHHHHhhCCC
Q 009045 299 FQDLILKDQN 308 (546)
Q Consensus 299 ~~~al~~~p~ 308 (546)
+++++++...
T Consensus 152 ~~~a~~~~~~ 161 (164)
T 3ro3_A 152 AEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999987543
No 192
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.29 E-value=8.3e-09 Score=102.20 Aligned_cols=332 Identities=12% Similarity=-0.012 Sum_probs=193.3
Q ss_pred HHHHHhHhcCCCCcccccccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHhcccchh
Q 009045 109 SKMDSALEFGVDADGDQSGLGTSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ-PLKAVSSYEKAEEILLRCEAD 187 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 187 (546)
..|++++...|. |.. .+++.+|++++...| +.+.|........+.+. .+.....|+.++.....+
T Consensus 16 ~vyer~l~~~P~--------~~~--e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d--- 81 (493)
T 2uy1_A 16 AIMEHARRLYMS--------KDY--RSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY--- 81 (493)
T ss_dssp HHHHHHHHHHHT--------TCH--HHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC---
T ss_pred HHHHHHHHHCCC--------CCH--HHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC---
Confidence 678889988885 444 899999999999888 88899888888877774 455678889988752100
Q ss_pred ccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHH------------------------
Q 009045 188 IARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV------------------------ 243 (546)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------------ 243 (546)
+.. ..+|...+..+.... ..+++.+.+...|++++..-+.+..
T Consensus 82 ---~~s---~~iW~~Yi~f~~~~~-------~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 82 ---WDS---YGLYKEYIEEEGKIE-------DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD 148 (493)
T ss_dssp ---TTC---HHHHHHHHHHTSSCS-------SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ---ccc---HHHHHHHHHHHHhch-------hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 100 122222222111100 1356778888899998874222111
Q ss_pred -------------------------HHHHHHHHHHHcCC---------hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc
Q 009045 244 -------------------------VWNTLGLILLKSGR---------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 289 (546)
Q Consensus 244 -------------------------~~~~l~~~~~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 289 (546)
.|... +-+..++ .+.....|++++...|..+.+|...+..+...
T Consensus 149 ~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y--~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 149 TLPIFQSSFQRYQQIQPLIRGWSVKNAARL--IDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHhhccHHHHHHH--HHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 11111 1112222 23467899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHH---HH---HHhcCCC
Q 009045 290 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL---LA---ALKADPK 363 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~---~~---al~~~p~ 363 (546)
|+.+.|...|++++.. |.+...+...+.... +... ++.....+ +. .....+.
T Consensus 227 ~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e---------------~~~~------~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD---------------EEAV------YGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp TCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT---------------CTHH------HHHHHHHTC----------CHHH
T ss_pred CCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc---------------hhHH------HHHHHHHHHhhccchhhhhcccc
Confidence 9999999999999999 998877665444311 0000 01111000 00 0001111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCC
Q 009045 364 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN-CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQI 442 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (546)
...+|...+....+.+..+.|...|+++ . .|. ....+...+......
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~------------------------------ 332 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYA------------------------------ 332 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHH------------------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHH------------------------------
Confidence 3456777777777777788888888888 3 332 222332222211100
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009045 443 EPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 520 (546)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 520 (546)
.++.+.|...+...+. +.....|...+......|+.+.|...|+++ +.....|......
T Consensus 333 ---------------~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~f 393 (493)
T 2uy1_A 333 ---------------TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEY 393 (493)
T ss_dssp ---------------HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHH
T ss_pred ---------------CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 1123333333333322 111122333344455566666677666665 3456666666666
Q ss_pred HHhcCChHHHHHHHHHHHHHhc
Q 009045 521 YYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 521 ~~~~g~~~~A~~~~~~al~~~~ 542 (546)
-...|+.+.+...++++++.+.
T Consensus 394 E~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhc
Confidence 6667777777777777776553
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.25 E-value=8.8e-11 Score=91.65 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|++..+++.+|.+|...|++++|+..|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC
Q 009045 305 KDQN 308 (546)
Q Consensus 305 ~~p~ 308 (546)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 8874
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.21 E-value=1.1e-10 Score=91.10 Aligned_cols=84 Identities=17% Similarity=0.105 Sum_probs=65.0
Q ss_pred HHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccc
Q 009045 259 QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEG 338 (546)
Q Consensus 259 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 338 (546)
++|+..|+++++.+|+++.+++.+|.+|...|++++|+..|++++.++|.+..++..+|.++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----------------- 64 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ----------------- 64 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------------
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-----------------
Confidence 356777888888888888888888888888888888888888888888877777777777776
Q ss_pred hHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 339 ACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 339 ~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
..|++++|+..|++++++.|.
T Consensus 65 ----~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 65 ----GQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp ----HHTCHHHHHHHHHHHHHHHHH
T ss_pred ----HcCCHHHHHHHHHHHHHhccc
Confidence 777778888888877777664
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.1e-11 Score=96.08 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH------PAALI 314 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 314 (546)
++..++.+|.++...|++++|+..|++++.++|+++.++.++|.++..+|++++|+..|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999998 67777
Q ss_pred HHHHHHH
Q 009045 315 NYAALLL 321 (546)
Q Consensus 315 ~l~~~~~ 321 (546)
.++.++.
T Consensus 83 ~~~~~~~ 89 (111)
T 2l6j_A 83 RLELAQG 89 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777766
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.9e-11 Score=94.76 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=86.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 354 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 354 (546)
++.++..+|.++...|++++|+..|+++++++|.+..++.++|.++. ..|++++|+..|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~ 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI---------------------KLGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---------------------HhcCHHHHHHHH
Confidence 36788999999999999999999999999999999999999998888 899999999999
Q ss_pred HHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 009045 355 LAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEK 390 (546)
Q Consensus 355 ~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (546)
+++++++|++ ..++..+|.++..+|+++.|+..+++
T Consensus 62 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 62 QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9999999998 88999999999999988888766654
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.18 E-value=3.3e-10 Score=83.97 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=79.0
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|.++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+.+|+++++++|++..++..++.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 009045 319 LLL 321 (546)
Q Consensus 319 ~~~ 321 (546)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.13 E-value=5.6e-10 Score=82.69 Aligned_cols=85 Identities=29% Similarity=0.397 Sum_probs=74.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH
Q 009045 274 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 353 (546)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 353 (546)
.+..+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++. ..|++++|+.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~ 65 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY---------------------KQGDYDEAIEY 65 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---------------------HHhhHHHHHHH
Confidence 356788899999999999999999999999999999888888888877 88899999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009045 354 LLAALKADPKAAHIWANLANAYYLTG 379 (546)
Q Consensus 354 ~~~al~~~p~~~~~~~~l~~~~~~~g 379 (546)
|+++++++|.+..++..+|.++...|
T Consensus 66 ~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 66 YQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999998887654
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.12 E-value=5.5e-10 Score=84.45 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=67.0
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 478999999999999999999999999999999999999999999999999999999999999999998664
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.09 E-value=3.6e-09 Score=85.16 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=104.9
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH----cCCHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSA 296 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 296 (546)
.+++++|+..|+++.+.... .+. +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 47889999999999988744 344 999999999999999999999987 689999999999999 89999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
.+|+++.+. .++.+.+++|.+|..-.+ -.+++++|+.+|+++.+.. ++.+...++
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g-----------------~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKG-----------------VVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCC-----------------CCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999986 688999999999872100 1789999999999999873 455555544
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.04 E-value=1.2e-09 Score=82.44 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=50.8
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
+|+++.+++.+|.+|...|++++|+..|+++++++|++..++..+|.++. ..|++++|+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~---------------------~~g~~~~A~ 61 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE---------------------RLDRTDDAI 61 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HcCCHHHHH
Confidence 57777777777777777777777777777777777777777777777666 677777777
Q ss_pred HHHHHHHhcCC
Q 009045 352 ECLLAALKADP 362 (546)
Q Consensus 352 ~~~~~al~~~p 362 (546)
..|++++++.|
T Consensus 62 ~~~~~al~l~~ 72 (100)
T 3ma5_A 62 DTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 77777776654
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.04 E-value=3.6e-10 Score=85.33 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhcCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCD-CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
+.+|.++...|++++|+..|+++++.+|++.. +++.+|.+|..+|++++|+..|+++++++|++..++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56788999999999999999999999999999 9999999999999999999999999999999887763
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.99 E-value=9.4e-09 Score=90.51 Aligned_cols=108 Identities=20% Similarity=0.208 Sum_probs=92.1
Q ss_pred hcCcccHHHHHHHHHHHHH-----cC------ChHHHHHHHHhhHhcCCC--ChHHHHHHHHHHHHc-----CCHHHHHH
Q 009045 236 QSDTRQAVVWNTLGLILLK-----SG------RLQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQS-----GDMEQSAK 297 (546)
Q Consensus 236 ~~~p~~~~~~~~l~~~~~~-----~g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~ 297 (546)
+.+|+++..++..|.+... .| ....|...++++++++|+ +..+|..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4578888888887776643 13 357899999999999999 677999999999995 99999999
Q ss_pred HHHHHHhhCCCC-HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 298 CFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 298 ~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
+|+++++++|+. ...++.+|..+.. ..|+++++..++++++..+|.
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~--------------------~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCI--------------------PLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTT--------------------TTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHH--------------------hcCCHHHHHHHHHHHHcCCCC
Confidence 999999999975 9999999888761 359999999999999998776
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.98 E-value=1e-08 Score=82.50 Aligned_cols=116 Identities=11% Similarity=-0.000 Sum_probs=100.6
Q ss_pred CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccccccccc
Q 009045 256 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 335 (546)
Q Consensus 256 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 335 (546)
+++++|+.+|+++.+... +.+. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|..-.+
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g---------- 72 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY---------- 72 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS----------
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCC----------
Confidence 478999999999998863 4444 999999999999999999999986 688999999999872100
Q ss_pred ccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 009045 336 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 336 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p 396 (546)
-.+++++|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+...
T Consensus 73 -------~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 73 -------VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp -------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred -------CCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 178999999999999986 679999999999999 9999999999999998743
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.98 E-value=2.3e-09 Score=105.17 Aligned_cols=128 Identities=10% Similarity=0.015 Sum_probs=104.5
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhc-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH--
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-----DQNHPA-- 311 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~-- 311 (546)
..+..+..+|+|++|+..+++++++ .|++ ...+.+||.+|..+|+|++|+.++++++.+ .|+++.
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3445577899999999999999986 3444 567899999999999999999999999975 355554
Q ss_pred -HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHcCChH
Q 009045 312 -ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPK---AAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 312 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~l~~~~~~~g~~~ 382 (546)
.+.++|.+|. .+|++++|+.+|++++++ .|+ .......++.++..++.++
T Consensus 394 ~~l~nLa~~~~---------------------~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 394 MAVMRAGLTNW---------------------HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665 999999999999999975 344 4566788999999999999
Q ss_pred HHHHHHHHHHhcC
Q 009045 383 SSGKCLEKAAKLE 395 (546)
Q Consensus 383 ~A~~~~~~al~~~ 395 (546)
+|...|.++.+..
T Consensus 453 ~ae~~~~~~~~~~ 465 (490)
T 3n71_A 453 QNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986543
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.98 E-value=1e-09 Score=82.86 Aligned_cols=91 Identities=10% Similarity=0.040 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 280 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
+.+|.++...|++++|+..|+++++.+|++.. ++..+|.++. ..|++++|+..|++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~---------------------~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR---------------------KLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHH
Confidence 56788888888888888888888888888888 8888887777 7888888888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 359 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 359 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
+++|++..++.. +.+.+++..|++++..+|++.
T Consensus 63 ~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 63 ELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred hcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 888888777643 566777777777777766553
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.93 E-value=3.3e-08 Score=91.08 Aligned_cols=144 Identities=11% Similarity=0.074 Sum_probs=110.3
Q ss_pred HhcCcccHH--HHHHHHHHHHHcCC---hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC----HHHHHH----HHHH
Q 009045 235 MQSDTRQAV--VWNTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD----MEQSAK----CFQD 301 (546)
Q Consensus 235 l~~~p~~~~--~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----~~~A~~----~~~~ 301 (546)
....|.+.. -++..|..++..+. +.+|+.+|+++++++|+++.++..++.+|..... ...... .++.
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 344555544 34556777766544 5889999999999999999999999988863211 111111 2222
Q ss_pred --HHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009045 302 --LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 379 (546)
Q Consensus 302 --al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 379 (546)
++..+|.++.++..++..+. ..|++++|+..+++++.++|. ...|..+|.++...|
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l---------------------~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G 324 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSAL---------------------VKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKG 324 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTT
T ss_pred HHhcccCCcCHHHHHHHHHHHH---------------------hCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC
Confidence 22556888888888777776 679999999999999999975 778899999999999
Q ss_pred ChHHHHHHHHHHHhcCCCChh
Q 009045 380 DHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 380 ~~~~A~~~~~~al~~~p~~~~ 400 (546)
++++|++.|++++.++|....
T Consensus 325 ~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 325 MNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH
T ss_pred CHHHHHHHHHHHHhcCCCcCh
Confidence 999999999999999998754
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.91 E-value=1.4e-08 Score=80.60 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=92.8
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---ChHHHHHHHHhhHhcC-C-CChHHHHHHHHHHHHcCCH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG---RLQSSISVLSSLLAVD-P-NNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~ 292 (546)
.+..+....+.+.|.+.+..++.+..+.+++|.++.+.+ +.++++..|+.+++.+ | +..++++++|..|+++|+|
T Consensus 8 ~l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 8 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 466778899999999999999999999999999999988 7779999999999998 7 5689999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
++|+++++++++++|++..+......+-
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999998876554443
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.89 E-value=6e-09 Score=102.25 Aligned_cols=137 Identities=9% Similarity=0.022 Sum_probs=109.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHH
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 234 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~a 234 (546)
...+..+..+|+|++|+..|++++++.-. ...++....+..+.+++.+|..+ |+|++|+.+++++
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~----~lg~~Hp~~a~~~~nLa~~y~~~-----------g~~~eA~~~~~~a 377 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEP----VFADTNLYVLRLLSIASEVLSYL-----------QAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTT----TBCTTSHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHH
Confidence 34455677899999999999999998432 12344455567888888887555 4559999999999
Q ss_pred Hhc--------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-----CCCC---hHHHHHHHHHHHHcCCHHHHHHH
Q 009045 235 MQS--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 235 l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+++ .|.-...+++||.+|..+|++++|+..|++++.+ .|++ .....+++.++..++.+++|...
T Consensus 378 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~ 457 (490)
T 3n71_A 378 VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFM 457 (490)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875 4555678999999999999999999999999986 4555 45667899999999999999999
Q ss_pred HHHHHhhC
Q 009045 299 FQDLILKD 306 (546)
Q Consensus 299 ~~~al~~~ 306 (546)
|.++.+..
T Consensus 458 ~~~~~~~~ 465 (490)
T 3n71_A 458 YHKMREAA 465 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987644
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.85 E-value=5.5e-08 Score=89.64 Aligned_cols=125 Identities=13% Similarity=0.069 Sum_probs=100.3
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCh----HHHHH----HHH--hhHhcCCCChHHHHHHHHHHHHc
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL----QSSIS----VLS--SLLAVDPNNCDCIGNLGIAYFQS 289 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----~~A~~----~~~--~al~~~p~~~~~~~~la~~~~~~ 289 (546)
...++.+|+.+|+++++++|+++.++..++.+|.....+ ..... .++ .++..+|.++.++..++..+...
T Consensus 211 ~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 346679999999999999999999999888888632111 11111 222 23456799999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 290 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
|++++|+..+++++.++|+ ..++..+|.++. ..|++++|++.|++++.++|....
T Consensus 291 gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~---------------------~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMS-WLNYVLLGKVYE---------------------MKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCcCh
Confidence 9999999999999999974 566677777776 899999999999999999998653
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.83 E-value=2.9e-08 Score=73.00 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=68.7
Q ss_pred CcccHHHHHHHHHHHHHcCC---hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 238 DTRQAVVWNTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
+|+++..+..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+.+|+++++.+|..+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68899999999999987766 79999999999999999999999999999999999999999999999999844
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.80 E-value=1e-07 Score=84.01 Aligned_cols=113 Identities=8% Similarity=0.045 Sum_probs=92.6
Q ss_pred hcCCCChHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccc
Q 009045 270 AVDPNNCDCIGNLGIAYFQ---S--G------DMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTG 336 (546)
Q Consensus 270 ~~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 336 (546)
..+|+++++++..|.+... . | ....|...++++++++|+ +..++..+|.+|...-.
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp----------- 214 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPE----------- 214 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCT-----------
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCC-----------
Confidence 4578888888888777643 1 3 357899999999999999 56689888888862100
Q ss_pred cchHHHhhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCC
Q 009045 337 EGACLDQASAVNVAKECLLAALKADPKA-AHIWANLANAYYL-TGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~ 398 (546)
..-|+.++|..+|+++++++|+. ...++..|..+.. .|++++|..++++++...|..
T Consensus 215 -----~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 215 -----SFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp -----TTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred -----ccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 01599999999999999999974 9999999999988 599999999999999998874
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.65 E-value=3e-07 Score=67.54 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 009045 306 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 385 (546)
Q Consensus 306 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 385 (546)
+|+++..+..+|.+++... .....++|...++++++.+|+++.++..+|..++..|+|++|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~------------------~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLH------------------KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTT------------------TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc------------------CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5888999999998886210 1122799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCh
Q 009045 386 KCLEKAAKLEPNCM 399 (546)
Q Consensus 386 ~~~~~al~~~p~~~ 399 (546)
.+|+++++.+|.++
T Consensus 64 ~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 64 DTWVLLLDSNDPNL 77 (93)
T ss_dssp HHHHHHHTCCCTTC
T ss_pred HHHHHHHhhCCCCc
Confidence 99999999999843
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=4.6e-07 Score=71.95 Aligned_cols=94 Identities=16% Similarity=0.089 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhc---CHHHHHHHHHHHHhcC-C-CCH
Q 009045 291 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS---AVNVAKECLLAALKAD-P-KAA 365 (546)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~-p-~~~ 365 (546)
....+.+.|.+.++.++.+.++.++++.++. +.+ ++++++..++..++.+ | +..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv---------------------~S~~~~~~~~gI~lLe~ll~~~~p~~~r 71 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV---------------------RSKYNDDIRKGIVLLEELLPKGSKEEQR 71 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---------------------TCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHH---------------------cCCCHHHHHHHHHHHHHHHhcCCccchH
Confidence 3466788888888888999999999999998 544 7789999999999998 7 578
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
++++++|..++++|+|++|+.+++++++++|++..+....
T Consensus 72 d~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 72 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999999999999999998776544
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.60 E-value=4.3e-07 Score=68.72 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 313 (546)
++.-.+.+|..++..|+|..|+..|+++++.. +....++..+|.+++++|+++.|+..+++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35567899999999999999999999999863 34578899999999999999999999999999999999988
Q ss_pred HHHH
Q 009045 314 INYA 317 (546)
Q Consensus 314 ~~l~ 317 (546)
.++.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7776
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.57 E-value=2.6e-07 Score=89.08 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=79.0
Q ss_pred ChhhHHHHHHHHHHHHhc-----C---cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-----CC---CChHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQS-----D---TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DP---NNCDCIGNLG 283 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~-----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p---~~~~~~~~la 283 (546)
..|+|++|+..|++++++ . |.-...+.++|.+|..+|+|++|+.++++++.+ .| +-...+.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346789999999999874 3 444568899999999999999999999999976 34 4456799999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH
Q 009045 284 IAYFQSGDMEQSAKCFQDLILK-----DQNHPAAL 313 (546)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 313 (546)
.+|..+|++++|+..|++++++ .|+++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999975 46766543
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.42 E-value=3.7e-07 Score=88.25 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=79.7
Q ss_pred cChhhHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-----CCC---ChHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQS--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPN---NCDCIGNL 282 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~l 282 (546)
..+|++++|+..+++++++ +|.-..++.++|.+|..+|+|++|+.++++++.+ .|+ -...+++|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3567889999999999975 3344668899999999999999999999999976 334 45678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH
Q 009045 283 GIAYFQSGDMEQSAKCFQDLILK-----DQNHPAAL 313 (546)
Q Consensus 283 a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 313 (546)
|.+|..+|++++|+.+|++++++ .|+++.+.
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 99999999999999999999975 56776554
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.40 E-value=1e-06 Score=85.16 Aligned_cols=108 Identities=12% Similarity=0.049 Sum_probs=82.9
Q ss_pred HHHHHHcCChHHHHHHHHhhHhc-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH---H
Q 009045 249 GLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-----DQNHPA---A 312 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~ 312 (546)
..-+..+|+|++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ .|+++. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466789999999999999976 3444 567899999999999999999999999975 355554 3
Q ss_pred HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHH
Q 009045 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPKAA---HIWANLANAYYL 377 (546)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~ 377 (546)
+.++|.+|. .+|++++|+.+|++++++ .|+++ .++.+|+.+...
T Consensus 374 l~nLa~~~~---------------------~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 374 VMKVGKLQL---------------------HQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------------hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 556666665 999999999999999976 45544 444556655543
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.39 E-value=4.1e-06 Score=63.19 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=65.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 347 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (546)
.+.-++.+|..++..|+|..|+.+|+.+++.. +.....+..+|.++. +.|++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~---------------------~~g~~ 62 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY---------------------QQGDL 62 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH---------------------HTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH---------------------HccCH
Confidence 35668899999999999999999999999864 234556667777666 99999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 348 NVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 348 ~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
++|+.++++++++.|++..+..+++
T Consensus 63 ~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 63 DKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 9999999999999999999888776
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.36 E-value=2.3e-06 Score=82.49 Aligned_cols=94 Identities=11% Similarity=0.004 Sum_probs=75.6
Q ss_pred HHcCChHHHHHHHHhhHhc-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH---HHHHH
Q 009045 253 LKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-----DQNHPA---ALINY 316 (546)
Q Consensus 253 ~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~l 316 (546)
...|+|++|+..|++++++ .|++ ...+.+||.+|..+|+|++|+.++++++.+ .|+++. .+.++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3468999999999999985 4555 467889999999999999999999999975 355554 45666
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc-----CCCCHHH
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPKAAHI 367 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 367 (546)
|.+|. .+|++++|+.+|++++++ .|+++.+
T Consensus 389 a~~~~---------------------~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 389 GRLYM---------------------GLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHH---------------------hccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 66665 999999999999999986 4555544
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.32 E-value=0.0002 Score=70.84 Aligned_cols=188 Identities=7% Similarity=0.063 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHH
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 232 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~ 232 (546)
.+..+-..+.+.|++++|+..|++..+..- .|+......+... +...+.. ......+.+++|...|+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv-------~pd~~tyn~Li~~----c~~~~~~--~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGV-------QLSQYHYNVLLYV----CSLAEAA--TESSPNPGLSRGFDIFK 94 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTC-------CCCHHHHHHHHHH----HTTCCCC--SSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------CCCHhHHHHHHHH----HHhCCch--hhhhhcchHHHHHHHHH
Confidence 355566788899999999999999987632 3333222222211 1111111 11346788999999999
Q ss_pred HHHhcC-cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CC
Q 009045 233 ESMQSD-TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ-NH 309 (546)
Q Consensus 233 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~ 309 (546)
++.... ..+...|..+...|.+.|++++|...|++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+..- -+
T Consensus 95 ~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 95 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 987653 2357789999999999999999999999987752 22577889999999999999999999999887532 24
Q ss_pred HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 009045 310 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAY 375 (546)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 375 (546)
...+..+...+. +.|+.++|.+++++.-+. .|+ ..++..+-..+
T Consensus 175 ~~ty~~Li~~~~---------------------~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 175 EPELAALLKVSM---------------------DTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---------------------hCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 556666666665 899999999999998764 344 44444444443
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.30 E-value=8.1e-06 Score=62.22 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHH---HHHHHHhhHhcC-C-CChHHHHHHHHHHHHcCCHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQS---SISVLSSLLAVD-P-NNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
.....+...|.+.+..++....+.+++|.++.+..+... ++..++..+..+ | ...+.++.||..++++|+|++|+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 445778888888888888889999999999999887777 999999999887 5 56789999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~ 318 (546)
.+++.+|+..|++..+......
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999888654433
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.26 E-value=0.00018 Score=71.21 Aligned_cols=155 Identities=12% Similarity=0.028 Sum_probs=122.9
Q ss_pred cChhhHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC---------hHHHHHHHHhhHhcCC-CChHHHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSD-TRQAVVWNTLGLILLKSGR---------LQSSISVLSSLLAVDP-NNCDCIGNLGIAYF 287 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 287 (546)
.+.|++++|+.+|+++.+.. +-+...|..+-.++...+. .++|.+.|++.....- -+...|..+...|.
T Consensus 37 ~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~ 116 (501)
T 4g26_A 37 SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV 116 (501)
T ss_dssp TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 46778899999999998753 2245667777666665443 6889999998876532 25778999999999
Q ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-CH
Q 009045 288 QSGDMEQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-AA 365 (546)
Q Consensus 288 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~ 365 (546)
+.|++++|.+.|++..+.. .-+..++..+...+. +.|++++|.+.|++..+..-. +.
T Consensus 117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~---------------------~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC---------------------RKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCCCH
Confidence 9999999999999988753 225566666666665 899999999999999875322 57
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
..|..+..+|.+.|+.++|..++++..+.
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999998764
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.14 E-value=4.2e-05 Score=59.44 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=65.7
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccc
Q 009045 145 RKMPKNAHAHFLLGLMYQRLGQP------LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE 218 (546)
Q Consensus 145 ~~~p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (546)
-..|++++.|..........|+. ++-+..|++|+...|-.. ...+...+.+|...+..
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k----~~~wrrYI~LWIrYA~~------------ 70 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK----YGQNESFARIQVRFAEL------------ 70 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG----GTTCHHHHHHHHHHHHH------------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc----cccHHHHHHHHHHHHHH------------
Confidence 45799999999999999999999 899999999999866442 22333333344333321
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 274 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 274 (546)
...++.++|...|+.++......+.+|...|..-.++|+...|.+.+.+++.+.|.
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 12233345555555554444444445555555555555555555555555554444
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.00 E-value=9.1e-05 Score=56.44 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC-C-CCHHH
Q 009045 290 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-P-KAAHI 367 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~ 367 (546)
.....+.+.|.+.+..++....+.++++.++.... ...+..+++.+++..+..+ | ..-+.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~------------------~~~d~~~GI~lLe~l~~~~~p~~~Rd~ 76 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR------------------YNDDIRKGIVLLEELLPKGSKEEQRDY 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS------------------SHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCC------------------CHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34566778888888888888999999999887210 2334456999999999887 5 56789
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
++.||..++++|+|++|..+++.+++..|++..+....
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999999999998766433
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.85 E-value=0.0004 Score=54.03 Aligned_cols=125 Identities=14% Similarity=0.065 Sum_probs=75.4
Q ss_pred cCCCChHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhhCccccccccccccchHHHh
Q 009045 271 VDPNNCDCIGNLGIAYFQSGDM------EQSAKCFQDLILKDQNHP-AALINYAALLLCKYGSVLAGAGANTGEGACLDQ 343 (546)
Q Consensus 271 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (546)
+.|++++.|..........|+. ++-++.|++++..-|... ..|..+..+.... + .+..
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrY--------------A-~~~e 72 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRF--------------A-ELKA 72 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHH--------------H-HHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHH--------------H-HHHH
Confidence 3566666666666666655666 666666666665543211 1111111111110 0 1125
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009045 344 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 411 (546)
Q Consensus 344 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~ 411 (546)
.++.++|.+.|+.+++++...+.+|...|..-.++|+...|...+.+++.+.|..... ...++..+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~ 139 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLN 139 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhh
Confidence 5778888888888887777778888888888888888888888888888888765433 333343333
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.69 E-value=0.0011 Score=51.21 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=80.6
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCh---HHHHHHHHhhHhcCC-CChHHHHHHHHHHHHcCCHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL---QSSISVLSSLLAVDP-NNCDCIGNLGIAYFQSGDMEQ 294 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~ 294 (546)
+...++......|.+-.. +.-...+.+++|+++.+..+. .+++..++..+...| ...+.++.||..++++|+|++
T Consensus 17 l~~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~ 95 (144)
T 1y8m_A 17 LYPQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSM 95 (144)
T ss_dssp CCHHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHH
T ss_pred CCHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHH
Confidence 455666777777765422 345688999999999998755 579999999999888 457899999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|.++.+.+|+..|++..+......
T Consensus 96 Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 96 AKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999887654433
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.66 E-value=0.00095 Score=50.95 Aligned_cols=99 Identities=15% Similarity=0.224 Sum_probs=80.0
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCh---HHHHHHHHhhHhcCCC-ChHHHHHHHHHHHHcCCHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL---QSSISVLSSLLAVDPN-NCDCIGNLGIAYFQSGDMEQ 294 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~ 294 (546)
+...++....+.|.+-+ ...-.+.+.+++|.++.+..+. .+++..++..++.+|. ..+.++.+|..++++|+|++
T Consensus 18 ~~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~ 96 (134)
T 3o48_A 18 LYPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSM 96 (134)
T ss_dssp CCHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHH
Confidence 45566667777776644 3333578999999999988754 5799999999998884 57899999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|.++.+.+++..|++..+......
T Consensus 97 Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 97 AKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHH
Confidence 999999999999999988654443
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.56 E-value=0.0002 Score=57.19 Aligned_cols=102 Identities=9% Similarity=0.006 Sum_probs=76.6
Q ss_pred ccChhhHHHHHHHHHHHHhcCccc---------HHHHHHHHHHHHHcCChHHHHHHHHhhHhc------CC---------
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQ---------AVVWNTLGLILLKSGRLQSSISVLSSLLAV------DP--------- 273 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p--------- 273 (546)
+++.+.|+.|+-....++....++ ..++..+|.+++..++|..|...|++++.. .+
T Consensus 30 L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ 109 (167)
T 3ffl_A 30 MAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS 109 (167)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred HHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 456677899999998877654333 348899999999999999999999998764 11
Q ss_pred ----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 274 ----------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 274 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+.++.+.++.||..+|++++|+..++.+- ..-..+.....+|.+|
T Consensus 110 ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 110 ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred CCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 112688999999999999999999987642 2334555556666554
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.55 E-value=0.00062 Score=54.34 Aligned_cols=116 Identities=10% Similarity=0.064 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ---NHP 310 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~ 310 (546)
.+++.....++..|.|+.|+-....++.+..++ ..++..+|.+++..|+|..|...|+++++... ...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356667777889999999999999887764333 34789999999999999999999999987642 222
Q ss_pred HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009045 311 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 390 (546)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (546)
.....++. . .... ....+ +.+.++.+.++.||..+|++++|+..++.
T Consensus 101 s~~~~~~~-~------------------------ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGN-S------------------------ASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ------------------------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred Cccccccc-c------------------------CCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 11111110 0 0000 01112 34577888888888888888888888765
Q ss_pred H
Q 009045 391 A 391 (546)
Q Consensus 391 a 391 (546)
+
T Consensus 148 I 148 (167)
T 3ffl_A 148 I 148 (167)
T ss_dssp S
T ss_pred C
Confidence 3
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.26 E-value=0.0014 Score=50.00 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=58.0
Q ss_pred ChhhHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
...+..+++.+++..++.+| ..-+.++.+|..+++.|+|++|..+.+.+++..|++..+......+
T Consensus 55 ~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 55 DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34677899999999999998 4578999999999999999999999999999999998877655444
No 232
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.22 E-value=0.023 Score=53.39 Aligned_cols=196 Identities=9% Similarity=0.049 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
-.+.+.||.+|...|++++-.+++.......+.-..+ .. +.+-..+...+.... +..+.-++.
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka----k~---~k~v~~l~~~~~~~~----------~~~~~~~~~ 81 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA----KA---AKLVRSLVDMFLDMD----------AGTGIEVQL 81 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH----HH---HHHHHHHHHHHTTSC----------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH----HH---HHHHHHHHHHHhcCC----------CcHHHHHHH
Confidence 4577899999999999999998888775543322111 11 111112211111111 223444555
Q ss_pred HHHHHhcCccc----HH--HHHHHHHHHHHcCChHHHHHHHHhhHhcCC--C----ChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 231 LKESMQSDTRQ----AV--VWNTLGLILLKSGRLQSSISVLSSLLAVDP--N----NCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 231 ~~~al~~~p~~----~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+..+++-..+. -. .-..+|..|+..|+|.+|.+.+.+.++... + -.+++..-..+|..++++.++...
T Consensus 82 ~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~ 161 (394)
T 3txn_A 82 CKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAA 161 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHH
Confidence 55555422221 11 233799999999999999999998876422 1 145677788899999999999999
Q ss_pred HHHHHhhCC---CCHHHHHHHHHHHHHhhCccccccccccccchHHH-hhcCHHHHHHHHHHHHhcCCC-----CHHHHH
Q 009045 299 FQDLILKDQ---NHPAALINYAALLLCKYGSVLAGAGANTGEGACLD-QASAVNVAKECLLAALKADPK-----AAHIWA 369 (546)
Q Consensus 299 ~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~-----~~~~~~ 369 (546)
|.++..... .++.. .|.+... -|..+. ..++|..|...|-.+++.... ...+..
T Consensus 162 l~~a~~~~~ai~~~p~i---~a~i~~~--------------~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lk 224 (394)
T 3txn_A 162 LTSARTTANAIYCPPKV---QGALDLQ--------------SGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLK 224 (394)
T ss_dssp HHHHHHHHHHSCCCHHH---HHHHHHH--------------HHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhhhccCCCCHHH---HHHHHHH--------------hhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 999976531 22222 2322221 267777 799999999999998765433 123344
Q ss_pred HHHHHHHHcCC
Q 009045 370 NLANAYYLTGD 380 (546)
Q Consensus 370 ~l~~~~~~~g~ 380 (546)
.++.+-...++
T Consensus 225 YlvL~aLl~~~ 235 (394)
T 3txn_A 225 YMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 45555555555
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.92 E-value=0.03 Score=43.35 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 222 EELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
.+..+++.+++..+...| ..-+.++.+|..++++|+|++|..+.+.+++..|+|..+......+
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 344667777777777666 4567899999999999999999999999999999998776654433
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.66 E-value=0.1 Score=49.10 Aligned_cols=175 Identities=10% Similarity=-0.055 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-hhhccCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKD-AERSQEPTEQLSWAGNEMASILREGDPVQIEP 444 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (546)
.+.+.||.+|...|++++-..++......-+.-+.+........+-+ ........+. ...-+...+..........
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGI---EVQLCKDCIEWAKQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHH---HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34577888899999888888888776655555444444332222211 1111111111 1111111111111000000
Q ss_pred --HHHHHHHHHHHHhcccHHHHHHHHHhhccc--------hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC---CCC-
Q 009045 445 --PIAWAGFAAVQKTHHEVAAAFETEENELSK--------MEECAGAGESAFLDQASAVNVAKECLLAALKAD---PKA- 510 (546)
Q Consensus 445 --~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~- 510 (546)
...-..+|..|...|++.+|...+.+.... .-.+.+.....+|...+++.++...+.++.... +.+
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 012237899999999999999888774431 111445566778999999999999999987643 122
Q ss_pred ---HHHHHHHHHHHH-hcCChHHHHHHHHHHHHHhcc
Q 009045 511 ---AHIWANLANAYY-LTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 511 ---~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~ 543 (546)
+.....-|.++. ..++|..|..+|-++++-|.+
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 345566788888 899999999999999877653
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.04 Score=56.42 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=48.7
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009045 484 SAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 537 (546)
Q Consensus 484 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (546)
+..+...|+++-|+++.++++...|.....|+.|+.||..+|+|+.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 446778899999999999999999999999999999999999999999776543
No 236
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.43 E-value=0.85 Score=45.87 Aligned_cols=51 Identities=8% Similarity=-0.023 Sum_probs=32.4
Q ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 489 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 489 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
+.|+++.|...|+..-..........|++|.++...|+.++|..+|+++.+
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 457777777766654433233456667777777777777777777766653
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.028 Score=57.49 Aligned_cols=123 Identities=11% Similarity=0.024 Sum_probs=83.7
Q ss_pred HcCC-hHHHHHHHHhhHhcCCCChHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHhh--------CCCCHHHHH---HHHH
Q 009045 254 KSGR-LQSSISVLSSLLAVDPNNCDCIGNLGIAYF--QS-GDMEQSAKCFQDLILK--------DQNHPAALI---NYAA 318 (546)
Q Consensus 254 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-g~~~~A~~~~~~al~~--------~p~~~~~~~---~l~~ 318 (546)
..++ ++.|+..|++....+|.... ++..+.+.. .. .+--+|+..+.+.++. .+.+..... ..+.
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455 58899999999988886543 333332222 12 2344677777776642 233322211 1111
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 391 (546)
++.. .+..+...|+++-|+++.++++...|.....|..|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~--------------Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNI--------------QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHH--------------HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1111 2445558899999999999999999999999999999999999999999988776
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.3 Score=47.19 Aligned_cols=193 Identities=11% Similarity=0.021 Sum_probs=122.1
Q ss_pred hcCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhcc
Q 009045 344 ASAVNVAKECLLAALKA------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417 (546)
Q Consensus 344 ~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~ 417 (546)
.|+++.|++.+....+. .+....+...+..++...|+|+...+.+.-..+.......+...+....+.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36688888877544432 223577888899999999999998887766555444333332222221111111100
Q ss_pred CchhHHHHHHHHHHHHHhcCC-----CCCC--CcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--------chhhhHHhh
Q 009045 418 EPTEQLSWAGNEMASILREGD-----PVQI--EPPIAWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAG 482 (546)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~ 482 (546)
.. .. ......+.... .+.. ........++.++...|++.+|...+..... ......+..
T Consensus 109 ~~--d~----~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~ 182 (445)
T 4b4t_P 109 SL--DL----NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILE 182 (445)
T ss_dssp TT--HH----HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHH
T ss_pred ch--hH----HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 00 00 00111111111 1111 2445678899999999999999998877322 112255667
Q ss_pred HHHHHHHhccHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 483 ESAFLDQASAVNVAKECLLAALK---ADPKA----AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 483 la~~~~~~g~~~~A~~~~~~al~---~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
...++...+++.+|...++++.. ..+.. ...+...|.++...++|.+|..+|..+++.+.
T Consensus 183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 183 QMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 77889999999999999998743 23333 34667889999999999999999999987653
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.25 E-value=0.85 Score=48.02 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=69.4
Q ss_pred HHHHcCChHHHHH-HHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc
Q 009045 251 ILLKSGRLQSSIS-VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329 (546)
Q Consensus 251 ~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 329 (546)
.....+++++|.. .+.. -| +...+..+...+...|.+++|++..+ +....+.+ ..
T Consensus 608 ~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~---~l-------- 663 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKFEL---AL-------- 663 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHHH---HH--------
T ss_pred HHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchheeh---hh--------
Confidence 3456789999876 4311 11 02223666777888899888876653 22222222 22
Q ss_pred ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
..|++++|.+..+ ..++...|..+|..+...|+++.|..+|.++-
T Consensus 664 -------------~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 664 -------------KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp -------------HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -------------hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7899999988764 33568899999999999999999999999863
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.13 E-value=0.13 Score=44.73 Aligned_cols=59 Identities=25% Similarity=0.378 Sum_probs=56.0
Q ss_pred HhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 342 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
.+.|++++|+......++.+|.+......+..++.-.|+|+.|...++.+.+++|+...
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 37899999999999999999999999999999999999999999999999999998753
No 241
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.11 E-value=0.38 Score=38.19 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC--CCCHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL--KD--QNHPAALINYA 317 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~--p~~~~~~~~l~ 317 (546)
++....++.+++-.|.|..++-.+.+ -+...+.+.-+.+|..+.++..|+..++..+. .+ |+- ++. +-
T Consensus 33 ~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~-d~~--~~ 104 (242)
T 3kae_A 33 PEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV-DAR--IQ 104 (242)
T ss_dssp -CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC-CHH--HH
T ss_pred hHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc-ccc--cc
Confidence 34445566666666776666655443 23345555666666667777777776666662 22 211 111 00
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH-IWANLANAYYLTGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 396 (546)
..-.+|.+-+ .+..+|.++.+.|+.++|+.+|.......|
T Consensus 105 ---------------------------------------~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 105 ---------------------------------------EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp ---------------------------------------TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ---------------------------------------eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 0112455554 456779999999999999999999999888
Q ss_pred CChh
Q 009045 397 NCMS 400 (546)
Q Consensus 397 ~~~~ 400 (546)
-.+.
T Consensus 146 lf~~ 149 (242)
T 3kae_A 146 LFSP 149 (242)
T ss_dssp CHHH
T ss_pred ccch
Confidence 6543
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.97 E-value=0.11 Score=54.83 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=22.8
Q ss_pred HHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 253 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 253 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
...|++++|.+..+. .++...|..+|..+...|+++.|+++|.++
T Consensus 663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555554332 133455555555555555555555555543
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.96 E-value=1.6 Score=43.92 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=78.2
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCCCh-H---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPNNC-D---CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 324 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~~~-~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 324 (546)
+.......+.+.|...+.+......-+. . .+..++.-....+...++...+.+...... +......++...+
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~Al--- 296 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMAL--- 296 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHH---
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHHH---
Confidence 4444455577888888877654322222 1 222233333334435567777777654333 3322222222222
Q ss_pred CccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 325 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
+.|+++.|..+|.+.-..........+.+|.++...|+.++|..+|+++..
T Consensus 297 ------------------r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 ------------------GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp ------------------HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ------------------HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 679999999999876554445688899999999999999999999999986
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.38 Score=39.10 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
+...+.++ ...|+++.|.+..+.. ++...|..||......|+++-|..+|.++
T Consensus 8 ~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 8 PHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34444444 4667777777776554 45667777777777777777777777765
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.74 E-value=0.32 Score=42.41 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=42.7
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 312 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 312 (546)
+.+.|..++|++.....++.+|.+......+..++.-.|+++.|.+.++.+.+++|.....
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 4556677777777777777777777777777777777777777777777777777765443
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.1 Score=42.44 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=55.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.++.|+++.|.+..+.. ++...|..+|......|+++-|..+|+++-. +..+..+|...|+.+.-..
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 45778899999988765 5678999999999999999999999998632 3345556667777765554
Q ss_pred HHHHHH
Q 009045 298 CFQDLI 303 (546)
Q Consensus 298 ~~~~al 303 (546)
.-+.+.
T Consensus 82 la~iA~ 87 (177)
T 3mkq_B 82 MQNIAQ 87 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 247
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.61 E-value=0.65 Score=36.91 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=62.0
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc----CCCChHHHHHHHHHHHHcCCHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV----DPNNCDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A 295 (546)
-.|.+..++-.+. .-+...+.+..+.||...++|..|+.++++.+.- +|+ .++..
T Consensus 45 yngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~-~d~~~--------------- 103 (242)
T 3kae_A 45 LNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPD-VDARI--------------- 103 (242)
T ss_dssp HTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCC-CCHHH---------------
T ss_pred hcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc-ccccc---------------
Confidence 3456666655543 2345677788899999999999999999999943 333 11111
Q ss_pred HHHHHHHHhhCCCCHHHHH-HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC
Q 009045 296 AKCFQDLILKDQNHPAALI-NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 362 (546)
+..-.+|.+.+... .+|.++. +.|+.++|+.+|.......|
T Consensus 104 -----~~ffvd~~DkEfFy~l~a~llt---------------------q~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 104 -----QEMFVDPGDEEFFESLLGDLCT---------------------LSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp -----HTTSCCTTCHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCC
T ss_pred -----ceeeeccchHHHHHHHHHHHHH---------------------HhcCHHHhhhHhhhhcCCcc
Confidence 11224566666543 3444444 78888888888887766554
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.31 E-value=0.51 Score=44.66 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.+...++..+...|++.+|+..+.+++..+|-+-.++..+-.++...|+..+|+..|+++-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999999999999988754
No 249
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.29 E-value=0.1 Score=50.80 Aligned_cols=79 Identities=20% Similarity=0.097 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
.+..+|.+......+..|..+|.+|+.+.|++...+..||.+....|+.-+|+-+|.+++......+.+..++..++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 6678999999999999999999999999999999999999999999999999999999998887788899888887764
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.03 E-value=1.6 Score=47.96 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
.+...+...++++-+.+ .+...|.++...+.+|.++...|++++|..+|+++.
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 34455666677766544 234456677777888888888888888888888764
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.91 E-value=2.9 Score=40.27 Aligned_cols=200 Identities=10% Similarity=-0.008 Sum_probs=111.5
Q ss_pred cChhhHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 219 LEPEELEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
+..+++.+|++.+...-+. .+....+...+..++...|+|+...+.+.-..+.......+...+....
T Consensus 27 l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~------ 100 (445)
T 4b4t_P 27 LAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKV------ 100 (445)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHH------
T ss_pred HHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHH------
Confidence 3568889998877544332 2234567788888999999999887777655544433322222222111
Q ss_pred HHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHh-hCcccc---ccccccccchHHHhhcCHHHHHHHHHHHHhc-C---CC
Q 009045 293 EQSAKCFQDLILKDQNH-PAALINYAALLLCK-YGSVLA---GAGANTGEGACLDQASAVNVAKECLLAALKA-D---PK 363 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~---p~ 363 (546)
+.++ ...|.. ......+...+... .++... .+.....++.++...|++.+|...+.....- . +.
T Consensus 101 ---~~~l----~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~ 173 (445)
T 4b4t_P 101 ---MEYL----KSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEM 173 (445)
T ss_dssp ---HHHH----HHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCH
T ss_pred ---HHHH----hcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccH
Confidence 1111 111111 00010000000000 000000 0111123567777999999999999887532 1 11
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-c--CCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCC
Q 009045 364 --AAHIWANLANAYYLTGDHRSSGKCLEKAAK-L--EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 438 (546)
Q Consensus 364 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (546)
-.+.+.....+|...+++..|...++++.. . .+..+..
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l------------------------------------- 216 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL------------------------------------- 216 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH-------------------------------------
Confidence 256778888999999999999999988742 1 2222111
Q ss_pred CCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc
Q 009045 439 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 473 (546)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 473 (546)
....+...|.++...++|.+|...|.....
T Consensus 217 -----k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 217 -----KLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp -----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 013466677888888888888887776443
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.27 Score=47.26 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=86.5
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC---CChHHHHHHHHHHHHcCCHHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP---NNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
...+++.+..+.+-...+..-..++..+|..|.+.|++++|.+.|.++..... ...+.+..+..++...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34455555544432222333455788999999999999999999999887633 336788889999999999999999
Q ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC
Q 009045 298 CFQDLILKD--QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362 (546)
Q Consensus 298 ~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 362 (546)
.+.++.... ..++.....+ .++. |.++...++|..|...|-.++....
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~l-k~~~----------------gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRY-KTYY----------------GIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHH-HHHH----------------HHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhhcCCCHHHHHHH-HHHH----------------HHHHHHhChHHHHHHHHHHHhccCC
Confidence 999987653 2233322211 2222 4445578899999998888876644
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.52 E-value=0.78 Score=43.35 Aligned_cols=87 Identities=10% Similarity=-0.004 Sum_probs=67.8
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCC----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNN----------------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 309 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (546)
....|+.+.|...+.+++.+.... ..+...++..+...|++.+|+..+.+++..+|-+
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~ 204 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR 204 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 334567777777777777663211 1234456778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 310 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
...+..+..++. ..|+..+|+..|+++-+
T Consensus 205 E~~~~~lm~al~---------------------~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 205 EPLWTQLITAYY---------------------LSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHH
Confidence 999988888887 89999999999987644
No 254
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.68 Score=44.79 Aligned_cols=126 Identities=11% Similarity=0.079 Sum_probs=53.7
Q ss_pred HHHHcCChHHHHHHHHhhHh-----------cCCCChHHHHHHHHHHHHcCCHHHHHH----------HHHHHHh-----
Q 009045 251 ILLKSGRLQSSISVLSSLLA-----------VDPNNCDCIGNLGIAYFQSGDMEQSAK----------CFQDLIL----- 304 (546)
Q Consensus 251 ~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~~A~~----------~~~~al~----- 304 (546)
.++..+++++|.++-...+. +++-.+.+|+..+.++...|+...... .+-.+++
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 35667888888887765541 144456778888888888887665322 2222222
Q ss_pred hCCCCHHH-HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHH
Q 009045 305 KDQNHPAA-LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-------AAHIWANLANAYY 376 (546)
Q Consensus 305 ~~p~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~ 376 (546)
.++..... +..+-+. |...+.++.|..+..++. .|. ....++.+|.++.
T Consensus 225 ~D~~~qa~l~nllLRn---------------------YL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a 281 (523)
T 4b4t_S 225 HDNETKAMLINLILRD---------------------FLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINA 281 (523)
T ss_dssp SSSCHHHHHHHHHHHH---------------------HHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHHHHH---------------------HHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHH
Confidence 12222222 2222333 448899999999999985 443 2566788999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCh
Q 009045 377 LTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
..++|.+|..++..|++..|.+.
T Consensus 282 ~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 282 IQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HhccHHHHHHHHHHHHHhCCcch
Confidence 99999999999999999888654
No 255
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.56 E-value=0.53 Score=45.84 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHH
Q 009045 278 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 357 (546)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 357 (546)
.+..||.+......+..|..+|.+|+.+.|++...+..+|.+.. ..|+.-+|+-+|-++
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~---------------------~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS---------------------SKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH---------------------HTTCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh---------------------cccccHHHHHHHHHH
Confidence 56778999988999999999999999999999999999999887 678888899999999
Q ss_pred HhcCCCCHHHHHHHHHHHHH
Q 009045 358 LKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 358 l~~~p~~~~~~~~l~~~~~~ 377 (546)
+......+.+..++..++..
T Consensus 213 l~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 213 IAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HSSSBCCHHHHHHHHHHHHH
T ss_pred HhcCCCChhHHHHHHHHHHH
Confidence 98777778888888877754
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.73 E-value=0.87 Score=43.70 Aligned_cols=104 Identities=16% Similarity=0.066 Sum_probs=77.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHH
Q 009045 273 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 273 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
.....++..+|..|...|++++|.+.|.++....... .+.+.....++. ..+++..
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l---------------------~~~d~~~ 186 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGF---------------------FYNDQLY 186 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHH---------------------HHTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH---------------------HhccHHH
Confidence 3446688999999999999999999999988764332 233444444444 7899999
Q ss_pred HHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 350 AKECLLAALKADP--KA----AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 350 A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+...+.++..... .+ .......|.++...++|.+|...|-.++.....
T Consensus 187 ~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 187 VKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 9999999866522 12 234556688888999999999999988765443
No 257
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.71 E-value=1.6 Score=46.05 Aligned_cols=100 Identities=8% Similarity=-0.008 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhc----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAV----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-QNHPAALIN 315 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 315 (546)
....+..+-..|.+.|+.++|...|....+. ..-+...|..+...|.+.|+.++|.+.|++..... .-+..+|..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3457888999999999999999999765432 22357899999999999999999999999998653 224555655
Q ss_pred HHHHHHHhhCccccccccccccchHHHhhcC-HHHHHHHHHHHHhcC
Q 009045 316 YAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAALKAD 361 (546)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~ 361 (546)
+...+. +.|+ .++|.++|++..+..
T Consensus 206 LI~glc---------------------K~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMG---------------------RQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHH---------------------HHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHH---------------------hCCCcHHHHHHHHHHHHHcC
Confidence 555554 6776 578899999988753
No 258
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.48 E-value=0.94 Score=47.77 Aligned_cols=96 Identities=9% Similarity=-0.060 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhcc------chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 009045 446 IAWAGFAAVQKTHHEVAAAFETEENELS------KMEECAGAGESAFLDQASAVNVAKECLLAALKAD-PKAAHIWANLA 518 (546)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 518 (546)
..+..+...+.+.|+.++|...+..... ..+...|..+-..|++.|++++|.+.|++..+.. .-+..+|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4688899999999999999999965321 2345677788889999999999999999998753 23577888888
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHHh
Q 009045 519 NAYYLTGDH-RSSGKCLEKVLMVY 541 (546)
Q Consensus 519 ~~~~~~g~~-~~A~~~~~~al~~~ 541 (546)
.++.+.|+. ++|.+.|++..+.-
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 899999985 78899999887654
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.81 E-value=3.7 Score=45.06 Aligned_cols=70 Identities=11% Similarity=-0.029 Sum_probs=46.4
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcC-CC----------------------ChHHHHHHHHHHHHcCCHH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-PN----------------------NCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~----------------------~~~~~~~la~~~~~~g~~~ 293 (546)
..|.++...+.+|.++...|++++|..+|+++-.-- .+ .+..|..+..++.+.|.++
T Consensus 837 ~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~ 916 (1139)
T 4fhn_B 837 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI 916 (1139)
T ss_dssp HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCH
T ss_pred hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHH
Confidence 345667778999999999999999999999984321 11 1223444555555566666
Q ss_pred HHHHHHHHHHhhC
Q 009045 294 QSAKCFQDLILKD 306 (546)
Q Consensus 294 ~A~~~~~~al~~~ 306 (546)
.+++.-+.|++..
T Consensus 917 ~vi~fa~lAi~~~ 929 (1139)
T 4fhn_B 917 DALEFSLLADASK 929 (1139)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666543
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.13 E-value=1.1 Score=43.30 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHH
Q 009045 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 147 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
|+-.+.+|+..+.++...|+.............+ .+.+..
T Consensus 177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~i---------r~~Ll~------------------------------- 216 (523)
T 4b4t_S 177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIIL---------RSTMMK------------------------------- 216 (523)
T ss_dssp --------------------------CHHHHHHH---------HTHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhH---------HHHHHH-------------------------------
Confidence 4556778888888888888777665555554444 111111
Q ss_pred HHHHHHHH-HhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-------hHHHHHHHHHHHHcCCHHHHHH
Q 009045 227 ILSKLKES-MQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 227 A~~~~~~a-l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.++.+ ++.++ ..+..+..+-+.|...+.|+.|.....++. .|.. ...++.+|.++.-+++|.+|.+
T Consensus 217 ---~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~ 291 (523)
T 4b4t_S 217 ---FLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANE 291 (523)
T ss_dssp ---HHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 11111 11222 235577788889999999999999999885 3422 4567788999999999999999
Q ss_pred HHHHHHhhCCCCH
Q 009045 298 CFQDLILKDQNHP 310 (546)
Q Consensus 298 ~~~~al~~~p~~~ 310 (546)
++..|+...|.+.
T Consensus 292 ~L~~A~rkap~~~ 304 (523)
T 4b4t_S 292 YIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHTSSCSCSS
T ss_pred HHHHHHHhCCcch
Confidence 9999998877543
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.24 E-value=24 Score=37.15 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
.-+++.+|.++...+ .+++..+...+.......... ....... .+-.++|.++...|+ +++.+.
T Consensus 413 ~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~-~~~~ir~-gAaLGLGla~~GS~~------------eev~e~ 476 (963)
T 4ady_A 413 GGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDE-DVDVLLH-GASLGIGLAAMGSAN------------IEVYEA 476 (963)
T ss_dssp HHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCH-HHHHHHH-HHHHHHHHHSTTCCC------------HHHHHH
T ss_pred HHHHHHHHHhcCCCc--HHHHHHHHHHHcCcccccccc-ccHHHHH-HHHHHHHHHhcCCCC------------HHHHHH
Confidence 445666666665544 478887877776421000000 0112222 233466666543333 567777
Q ss_pred HHHHHhcCcccH--HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 231 LKESMQSDTRQA--VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 231 ~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
+...+..+.... .+-+.+|.++.-.|+-+-....+..+.+...+...-...+|......|+.+.+....+...
T Consensus 477 L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 477 LKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKML 551 (963)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Confidence 777776443221 3455677778788876655555555554333322223344444556777766665555543
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.90 E-value=24 Score=31.74 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=45.3
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhH----------------h---cCCCChHHHHHHHH-HHHHcCCHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLL----------------A---VDPNNCDCIGNLGI-AYFQSGDMEQSAKC 298 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------~---~~p~~~~~~~~la~-~~~~~g~~~~A~~~ 298 (546)
-.++..+..+|..|+..|++.+|..+|-..- + -.|.....+...+. .|..+|+...|...
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~ 210 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHES 210 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3578999999999999999999999885331 1 11222333333333 45678888888888
Q ss_pred HHHHHh
Q 009045 299 FQDLIL 304 (546)
Q Consensus 299 ~~~al~ 304 (546)
|+...+
T Consensus 211 ~~~f~~ 216 (312)
T 2wpv_A 211 KDIFLE 216 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.90 E-value=38 Score=30.74 Aligned_cols=148 Identities=11% Similarity=-0.036 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHH
Q 009045 348 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG 427 (546)
Q Consensus 348 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 427 (546)
.+|+.+-.+.=...-.++..+..+|..|.+.+++.+|..+|- +..+ +.+..+..+-.......
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~-~s~~~~a~mL~ew~~~~-------------- 181 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTK-ESPEVLARMEYEWYKQD-------------- 181 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCT-THHHHHHHHHHHHHHTS--------------
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCC-chHHHHHHHHHHHHHhc--------------
Confidence 445555444212233589999999999999999999999883 2111 11122222222111110
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHH-HHHHHHhcccHHHHHHHHHh---hcc---c----------------hhhhHHh---
Q 009045 428 NEMASILREGDPVQIEPPIAWAG-FAAVQKTHHEVAAAFETEEN---ELS---K----------------MEECAGA--- 481 (546)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~---~l~---~----------------~~~~~~~--- 481 (546)
. +.....+.. ....|...++...|...+.. .+. + .+.....
T Consensus 182 ----------~---~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl 248 (336)
T 3lpz_A 182 ----------E---SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFI 248 (336)
T ss_dssp ----------C---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHH
T ss_pred ----------C---CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHH
Confidence 0 122233333 33345566666666554332 211 1 0111111
Q ss_pred hHHHHHHHhcc---HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Q 009045 482 GESAFLDQASA---VNVAKECLLAALKADP-KAAHIWANLANAYYLTG 525 (546)
Q Consensus 482 ~la~~~~~~g~---~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g 525 (546)
.+...-++.+. |..-...|+..++.+| .....+..+|.+|+...
T Consensus 249 ~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 249 SMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence 22223334442 6666777788888888 77889999999998664
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=77.72 E-value=11 Score=28.96 Aligned_cols=55 Identities=24% Similarity=0.170 Sum_probs=43.6
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 486 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 486 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
.+...|+-++-.+.+...+...+-++..+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4567777777777777766666777999999999999999999999999988764
No 265
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=76.29 E-value=5.4 Score=27.65 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=16.3
Q ss_pred HHHHHHhccHHHHHHHHHHHHH
Q 009045 484 SAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 484 a~~~~~~g~~~~A~~~~~~al~ 505 (546)
|.-..+.|+|++|+.+|..+++
T Consensus 18 Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 18 AVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3466788888888888877765
No 266
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.19 E-value=19 Score=38.44 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=42.8
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
.+...+...|.++-|. ..+...|.++..-+.+|.+|...|++++|..+|+++-
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3556667778877554 3556678888888999999999999999999999875
No 267
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=74.44 E-value=7.3 Score=26.09 Aligned_cols=30 Identities=20% Similarity=0.073 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhccc
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRC 184 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 184 (546)
..+|..+...|++++|..+|-+|+...|++
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 468999999999999999999999997654
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.08 E-value=50 Score=29.68 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 274 NNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
.++..+..+|..|+..|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578899999999999999999988874
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=70.93 E-value=21 Score=27.49 Aligned_cols=54 Identities=26% Similarity=0.205 Sum_probs=45.0
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 396 (546)
..|+-++--+.+...+...+-++..+..+|.+|.+.|+..+|-+.+.+|.+..-
T Consensus 103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 103 IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 677778777778777676777899999999999999999999999999987643
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.70 E-value=62 Score=29.35 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 274 NNCDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
.++..+..+|..|++.+++.+|..+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 57888999999999999999988887
No 271
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.17 E-value=29 Score=29.21 Aligned_cols=48 Identities=8% Similarity=0.060 Sum_probs=26.4
Q ss_pred HHHHHHHhhHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 260 SSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 260 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
.+..+|.-+... .-..+..|...|..+...|++.+|...|+..++...
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 444444444332 334455555666666666666666666666665543
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.46 E-value=37 Score=27.02 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=36.8
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
+|....+|...+... +.+..+|..+... ....+..|...|..+...|++.+|.+.|+..++....
T Consensus 62 D~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 62 DPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp CHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 344444555555432 2344455544433 3445666666677777777777777777777765543
No 273
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=68.86 E-value=5.5 Score=27.59 Aligned_cols=15 Identities=13% Similarity=-0.292 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHh
Q 009045 167 PLKAVSSYEKAEEIL 181 (546)
Q Consensus 167 ~~~A~~~~~~al~~~ 181 (546)
.++|+.+..+|++.+
T Consensus 16 ~~~Ai~lv~~Ave~D 30 (83)
T 2w2u_A 16 EEMARKYAINAVKAD 30 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888888764
No 274
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=68.41 E-value=9.3 Score=26.67 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=14.4
Q ss_pred hHHHHHHHhccHHHHHHHHHHHH
Q 009045 482 GESAFLDQASAVNVAKECLLAAL 504 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al 504 (546)
..+..+.+.|+|++||++.+++.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHH
Confidence 55556666666666666666553
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=68.00 E-value=14 Score=24.78 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhcCCCChHH
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 278 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 278 (546)
..+|..+...|++++|..+|-+|+...|.-...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 357888888888888888888888887765443
No 276
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=67.74 E-value=12 Score=26.54 Aligned_cols=30 Identities=20% Similarity=0.073 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhccc
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRC 184 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 184 (546)
..+|..+...|+++.|+.+|-+|+...|++
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 458999999999999999999999997654
No 277
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=67.31 E-value=6.1 Score=27.37 Aligned_cols=15 Identities=13% Similarity=-0.383 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHh
Q 009045 167 PLKAVSSYEKAEEIL 181 (546)
Q Consensus 167 ~~~A~~~~~~al~~~ 181 (546)
.++|+.+..+|++.+
T Consensus 8 ~~~Ai~lv~~Ave~D 22 (83)
T 2v6y_A 8 EDMARKYAILAVKAD 22 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 357888888988874
No 278
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=64.79 E-value=1.5e+02 Score=31.45 Aligned_cols=146 Identities=13% Similarity=0.094 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhCC---C---C----HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcc
Q 009045 135 REEKGLVHVARKMP---K---N----AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQC 204 (546)
Q Consensus 135 ~a~~~~~~~l~~~p---~---~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 204 (546)
.+.+.+...+..+. . + ..+...||.++.-.++ +++...+...+..+ .. ... ..+-..+|
T Consensus 429 ~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd--------~~-~~~-~~AalALG 497 (963)
T 4ady_A 429 DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND--------SA-TSG-EAAALGMG 497 (963)
T ss_dssp HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC--------CH-HHH-HHHHHHHH
T ss_pred HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC--------CH-HHH-HHHHHHHh
Confidence 45555666665432 0 1 1355577777765554 56777777777632 11 111 12333455
Q ss_pred ccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHH----HH
Q 009045 205 LLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC----IG 280 (546)
Q Consensus 205 ~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~ 280 (546)
.++..-|+ -+-...++..+.+...+...-...+|..+...|+.+.+-...+..... .++.. -.
T Consensus 498 li~vGTgn-----------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~ 564 (963)
T 4ady_A 498 LCMLGTGK-----------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAF 564 (963)
T ss_dssp HHHTTCCC-----------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHH
T ss_pred hhhcccCC-----------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 55443333 244444555555544443333445566666778877766666655443 23333 34
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 281 NLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 281 ~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.+|..|...|+...-...+..+..
T Consensus 565 alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 565 TIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHhcc
Confidence 567778889996544446666554
No 279
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.25 E-value=40 Score=36.05 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=65.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccc
Q 009045 139 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE 218 (546)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (546)
...+.+.--|.++..-|.+|.+|...|++++|..+|++|-.-.... ..
T Consensus 828 ~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~-------~~------------------------- 875 (950)
T 4gq2_M 828 ACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSH-------TS------------------------- 875 (950)
T ss_dssp HHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSS-------CC-------------------------
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccC-------cc-------------------------
Confidence 3445666778888888999999999999999999999874210000 00
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-CCCChH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNNCD 277 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 277 (546)
...- .......+ ...+........|.....++...+-++-++...+.||+. .+++..
T Consensus 876 ~~~~-~~~~~~ll-~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 876 QFAV-LREFQEIA-EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp SCGG-GHHHHHHH-HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred cccc-hhhhhhcc-CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 0000 01111111 111112223447777888899999999999999999975 344443
No 280
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=64.02 E-value=14 Score=25.87 Aligned_cols=30 Identities=23% Similarity=0.088 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 180 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 180 (546)
+..+-.++..+.+.|+|++||++.+++...
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 455667889999999999999999999875
No 281
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=62.93 E-value=14 Score=25.60 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=11.2
Q ss_pred hHHHHHHHhccHHHHHHHHHHHH
Q 009045 482 GESAFLDQASAVNVAKECLLAAL 504 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al 504 (546)
..|.-..+.|++++|+.+|.+++
T Consensus 24 ~~Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 24 INAVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 33444445555555555555543
No 282
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=62.76 E-value=26 Score=33.52 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=66.3
Q ss_pred ChhhHHHHHHHHHHHHhcCcc------------cHH----HHHHHHHHHHHcCChHHHHHHHHhhHhcCC----------
Q 009045 220 EPEELEEILSKLKESMQSDTR------------QAV----VWNTLGLILLKSGRLQSSISVLSSLLAVDP---------- 273 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~------------~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------- 273 (546)
+....+++...+.++....-. .-. ....+-.+|++.++..-+...++..-...+
T Consensus 138 ~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~ 217 (455)
T 3t5v_B 138 SHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLD 217 (455)
T ss_dssp TTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHH
T ss_pred chhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCcc
Confidence 346678888888888764211 111 233456789999999999998876533322
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Q 009045 274 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK-DQNH 309 (546)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 309 (546)
.....++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 12457889999999999999999999999998 7765
No 283
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=62.08 E-value=18 Score=30.22 Aligned_cols=35 Identities=9% Similarity=-0.039 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC 276 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 276 (546)
....+.+|.+++..++|.+|.+.+..|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 44667788888888888888888888888777553
No 284
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=60.94 E-value=46 Score=26.41 Aligned_cols=60 Identities=8% Similarity=0.063 Sum_probs=39.2
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCC---HH---HHHH-H--HHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 483 ESAFLDQASAVNVAKECLLAALKADPKA---AH---IWAN-L--ANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 483 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~---~~~~-l--g~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
-+..++..|+|=+|-+.++.+....+.. .. .+.. + |....+.|+..-|...+.+++..+.
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3446666788888888888877765443 12 2222 2 3334667888888888888887663
No 285
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=60.36 E-value=42 Score=30.47 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHHHc--CChHHHHHHHHhhHhc-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 241 QAVVWNTLGLILLKS--GRLQSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
.+.++.+||.+-... .....++..|.+++.. ......-|..+|..+++.+++.+|+..+-.+-..
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 455566666554432 2223377788887765 3345677888999999999999999999887643
No 286
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=60.12 E-value=12 Score=26.62 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 515 ANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 515 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
..+|..+...|+++.|+.+|-+|+.+++.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34666666777777777777777766643
No 287
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=56.98 E-value=13 Score=25.30 Aligned_cols=26 Identities=8% Similarity=-0.095 Sum_probs=15.8
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHH
Q 009045 480 GAGESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
...+|+-|...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34555666666666666666666544
No 288
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=56.87 E-value=20 Score=24.99 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=16.8
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHH
Q 009045 480 GAGESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
+...|.-....|+|++|+.+|..+++
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33555556677777777777777654
No 289
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=56.15 E-value=46 Score=31.83 Aligned_cols=99 Identities=8% Similarity=-0.046 Sum_probs=60.8
Q ss_pred ChhHHHHHHHHHHHHhcccchhcc--c-h-hhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHH------
Q 009045 166 QPLKAVSSYEKAEEILLRCEADIA--R-P-ELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM------ 235 (546)
Q Consensus 166 ~~~~A~~~~~~al~~~p~~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al------ 235 (546)
..+++...+.++....-.+..... . | .-.........+..+|.++|+. ..+...++..-
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~-----------~lckni~k~i~~~~~~p 209 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESP-----------QLCSNIFKNFQPKSMLA 209 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCC-----------TTHHHHHHTHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCH-----------HHHHHHHHHhccCCCCc
Confidence 466777788888777433211110 0 1 2222333344555666666665 55555554332
Q ss_pred --hcCc--ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-CCCC
Q 009045 236 --QSDT--RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNN 275 (546)
Q Consensus 236 --~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~ 275 (546)
...| +....++.+|.+++..++|.+|.+.+..|+.. .|..
T Consensus 210 ~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 210 HFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 2222 22457889999999999999999999999998 7754
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.01 E-value=86 Score=25.92 Aligned_cols=73 Identities=7% Similarity=-0.037 Sum_probs=56.3
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
.||....+|...+..+ ..+...++...|.-+... .-..+..|...|..+...|++.+|...|+..++....-.
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3556667787777765 234467888888877654 556688888999999999999999999999998765443
No 291
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=55.93 E-value=71 Score=25.32 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHH---HH---HHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCI---GN---LGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~---~~---la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
-+..|..++..|+|=+|-++++.+....+.. ...+ .. .|..+...|+..-|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456777888899999999999998876544 2222 22 333456789999999999999874
No 292
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=55.77 E-value=31 Score=28.74 Aligned_cols=38 Identities=8% Similarity=-0.019 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 009045 276 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 313 (546)
....+.+|.+++..++|.+|.+.+..|+...|......
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~ 51 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKN 51 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHH
Confidence 45688999999999999999999999999988765443
No 293
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.61 E-value=11 Score=27.88 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=8.2
Q ss_pred HhccHHHHHHHHHHHH
Q 009045 489 QASAVNVAKECLLAAL 504 (546)
Q Consensus 489 ~~g~~~~A~~~~~~al 504 (546)
..|+-+.|+.+|++.+
T Consensus 34 E~g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 34 ELGQKEEAKNYYKQGI 49 (116)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH
Confidence 3455555555555444
No 294
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=52.13 E-value=67 Score=29.84 Aligned_cols=65 Identities=6% Similarity=-0.027 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHHHHcCC--hHHHHHHHHhhHhc-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 241 QAVVWNTLGLILLKSGR--LQSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
.+.++.+||.+-...-- -..++..|.+++.. ......-|..+|..+++.+++.+|+..+-.+-..
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 34455555554433211 12367777777664 3345677888999999999999999998887643
No 295
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=51.86 E-value=25 Score=24.86 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=13.9
Q ss_pred hhHHHHHHHhccHHHHHHHHHHHHH
Q 009045 481 AGESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
...|.-....|+|++|+.+|..+++
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444455556666666666665543
No 296
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=51.47 E-value=26 Score=24.22 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=13.5
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHH
Q 009045 482 GESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
..|.-....|+|++|+.+|..+++
T Consensus 18 ~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 18 QKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444445555666666666666543
No 297
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=49.91 E-value=16 Score=27.25 Aligned_cols=14 Identities=29% Similarity=0.140 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHH
Q 009045 167 PLKAVSSYEKAEEI 180 (546)
Q Consensus 167 ~~~A~~~~~~al~~ 180 (546)
.+.|+.++.+|++.
T Consensus 15 l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 15 LQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34666666666654
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.50 E-value=93 Score=24.38 Aligned_cols=47 Identities=9% Similarity=-0.005 Sum_probs=25.1
Q ss_pred HHHHHHhhHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 261 SISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 261 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
+...|.-+... ....+..|...|..+...|++.+|.+.|+..++...
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44444444432 333455555556666666666666666666665443
No 299
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.09 E-value=1.1e+02 Score=25.23 Aligned_cols=47 Identities=6% Similarity=-0.035 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 493 VNVAKECLLAALKA--DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 493 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
..++...|.-.... .-..+..|...|..+...|++++|.+.|+.+++
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33555555544432 233455555555556666666666666666554
No 300
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=48.55 E-value=26 Score=26.04 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=16.3
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHH
Q 009045 480 GAGESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
+...|.-....|+|++|+.+|..+++
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33455555666777777777776654
No 301
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=48.38 E-value=24 Score=23.94 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH
Q 009045 154 HFLLGLMYQRLGQPLKAVSSYEKAEEI 180 (546)
Q Consensus 154 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 180 (546)
...+|+-|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456888899999999999999999986
No 302
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=46.92 E-value=72 Score=22.53 Aligned_cols=57 Identities=16% Similarity=-0.131 Sum_probs=38.6
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHH--HHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 484 SAFLDQASAVNVAKECLLAALKADPKAA----HIWANL--ANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 484 a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
|..++..|+|=+|=+.++..-...|+.. ..+..+ |......|+. |...+.+++..+.
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~ 70 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLE 70 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHT
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHH
Confidence 4466677888888888888887775431 122223 3334567887 9999999988764
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.98 E-value=1.1e+02 Score=24.29 Aligned_cols=48 Identities=4% Similarity=-0.054 Sum_probs=36.4
Q ss_pred HHHHHHHHHh--cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC
Q 009045 227 ILSKLKESMQ--SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 274 (546)
Q Consensus 227 A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 274 (546)
+..+|..+.. +.-..+..|...|..+...|++.+|.++|+.+++....
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4445554443 33455778888999999999999999999999997643
No 304
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=45.11 E-value=0.043 Score=52.14 Aligned_cols=186 Identities=10% Similarity=-0.011 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 149 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
+++..+...-.+..+.|++++=+.+++.+.+. ...|.........++...-+..+-+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-------~ke~~IDteLi~ayAk~~rL~elEef--------------- 138 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-------ARESYVETELIFALAKTNRLAELEEF--------------- 138 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-------CCSTTTTHHHHHHHHTSCSSSTTTST---------------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------hcccccHHHHHHHHHhhCcHHHHHHH---------------
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
+...+..-....|.-++..|.|+.|.-.|.. ..-|..|+.++..+|+|..|++.-++| +
T Consensus 139 --------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~--------isN~akLAstLV~L~~yq~AVdaArKA-----n 197 (624)
T 3lvg_A 139 --------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNN--------VSNFGRLASTLVHLGEYQAAVDGARKA-----N 197 (624)
T ss_dssp --------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGG--------SCCCTTTSSSSSSCSGGGSSTTTTTTC-----C
T ss_pred --------HcCCCcccHHHHHHHHHHccCHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHHHHHHhc-----C
Q ss_pred CHHHHHHHHHHHHHhhCccccc---------cccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAG---------AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
++.+|......+.......++. +.....+-..|...|.+++-+..++.++.+..-+......||.+|.+
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
No 305
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=42.40 E-value=1.2e+02 Score=23.79 Aligned_cols=81 Identities=6% Similarity=-0.053 Sum_probs=44.3
Q ss_pred HHHHHhcccHHHHHHHHHh-hccchhhhHHhhHHHHHHHhccHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH
Q 009045 452 AAVQKTHHEVAAAFETEEN-ELSKMEECAGAGESAFLDQASAVNV-AKECLLAALKADPKAAHIWANLANAYYLTGDHRS 529 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~-~l~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 529 (546)
+...+-..+|.+.+..+.. .....+....|.+|..|.....+.+ .....-..+.+. .+-.+.+-|+|...|++++
T Consensus 15 a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlk---Sde~yL~YWIyiGRg~~~e 91 (161)
T 2ynq_A 15 STELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLK---TDEQYMLYWIYIGRSQSEE 91 (161)
T ss_dssp HHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTT---SCHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCcc---CCHHHHHHHHHHcCCchHH
Confidence 3344555667777666665 4445566677777777777665442 222222222221 2233445566666777777
Q ss_pred HHHHHH
Q 009045 530 SGKCLE 535 (546)
Q Consensus 530 A~~~~~ 535 (546)
|+..-+
T Consensus 92 AlDiA~ 97 (161)
T 2ynq_A 92 ALELAR 97 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 306
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=39.06 E-value=2.5e+02 Score=26.28 Aligned_cols=77 Identities=5% Similarity=-0.026 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHcC--ChHHHHHHHHhhHhc-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CC
Q 009045 241 QAVVWNTLGLILLKSG--RLQSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK------DQ 307 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p 307 (546)
.+.++.+||.+-...- ....++..|++++.. .......|..+|-.+++.+++.+|+..+-.+-.. ..
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~r 340 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCR 340 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCT
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhccccc
Confidence 3445555555443221 223467778877764 3345677888899999999999999999888653 34
Q ss_pred CCHHHHHHHH
Q 009045 308 NHPAALINYA 317 (546)
Q Consensus 308 ~~~~~~~~l~ 317 (546)
++.+.+..+.
T Consensus 341 eDeEiYke~~ 350 (489)
T 4gq4_A 341 EDEEIYKEFF 350 (489)
T ss_dssp TCHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 4555554443
No 307
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=37.45 E-value=1.9e+02 Score=24.56 Aligned_cols=32 Identities=6% Similarity=0.044 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 274 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 274 (546)
.-+..++.+..+.++|++.+.++++++..++.
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~e 37 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVE 37 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCC
Confidence 34556777788889999999998888887664
No 308
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.51 E-value=38 Score=24.98 Aligned_cols=17 Identities=18% Similarity=-0.162 Sum_probs=12.7
Q ss_pred CChhHHHHHHHHHHHHh
Q 009045 165 GQPLKAVSSYEKAEEIL 181 (546)
Q Consensus 165 g~~~~A~~~~~~al~~~ 181 (546)
..+++|..+..++|+++
T Consensus 17 ~~h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 34677888888888874
No 309
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=35.27 E-value=1e+02 Score=28.06 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 510 AAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 510 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
+...|..+|-.+++.+++.+|+.++-.|-.+.
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi 326 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVA 326 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666655544
No 310
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=34.62 E-value=67 Score=22.07 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 009045 154 HFLLGLMYQRLGQPLKAVSSYEKAEEIL 181 (546)
Q Consensus 154 ~~~lg~~~~~~g~~~~A~~~~~~al~~~ 181 (546)
+...|.-.-..|++++|+.+|..+++..
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~aie~l 43 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGLDYL 43 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3444455667899999999999999863
No 311
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=33.28 E-value=2.3e+02 Score=24.28 Aligned_cols=149 Identities=8% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-------------------hHHHHHHHHHHHHc-----CCHHHHHHHHH
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------------------CDCIGNLGIAYFQS-----GDMEQSAKCFQ 300 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~-----g~~~~A~~~~~ 300 (546)
+..++.+..+.++|++.+.+.++++..++.- ...|..+..+-.+. ......++.|+
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~~~i~~yr 86 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYR 86 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q ss_pred HHH--hhCCCCHHHHHHHHHHHHHhhCcc--ccccccccccchHHHhhcCH----------HHHHHHHHHHHhc------
Q 009045 301 DLI--LKDQNHPAALINYAALLLCKYGSV--LAGAGANTGEGACLDQASAV----------NVAKECLLAALKA------ 360 (546)
Q Consensus 301 ~al--~~~p~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~------ 360 (546)
+-+ ++..-..+....+-..+....... ......+-..|++|.-.-.+ +.|...|+.|.++
T Consensus 87 ~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~ 166 (248)
T 3uzd_A 87 EKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQ 166 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCC
Q ss_pred --CCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHh
Q 009045 361 --DPKAAHIWANLANAYYL-TGDHRSSGKCLEKAAK 393 (546)
Q Consensus 361 --~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~ 393 (546)
+|-......+.+..|+. +++.++|....++++.
T Consensus 167 pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 167 PTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 312
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=32.60 E-value=1.3e+02 Score=21.19 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 281 NLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 281 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
..|..++..|+|=+|-+.++..-...|.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~ 33 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG 33 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC
Confidence 3566777788898898888888877754
No 313
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=31.19 E-value=1.2e+02 Score=28.11 Aligned_cols=32 Identities=13% Similarity=-0.005 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 510 AAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 510 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
+..-|..+|-.+++.+++.+|+.++-.+-.+.
T Consensus 317 HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi 348 (550)
T 3u84_A 317 HIYPYMYLAGYHCRNRNVREALQAWADTATVI 348 (550)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccceeecchhhhhcchHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666655544
No 314
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=27.91 E-value=1.6e+02 Score=20.67 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 009045 448 WAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 511 (546)
Q Consensus 448 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 511 (546)
+...|.-....|++++|+.. |..|+++|..++...|+..
T Consensus 18 lv~~Ave~D~~g~y~eAl~~-------------------------Y~~Aie~l~~alk~e~~~~ 56 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVC-------------------------YQEGIDMLLQVLKGTKESS 56 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHH-------------------------HHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHhCCHHHHHHH-------------------------HHHHHHHHHHHHHHCCCHH
Confidence 44555566677788888766 4567777888877766543
No 315
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=27.88 E-value=1.5e+02 Score=20.47 Aligned_cols=32 Identities=22% Similarity=0.124 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 009045 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 180 (546)
Q Consensus 149 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 180 (546)
+.+..+..-|.-+++.++|.+|..+|+++...
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 34667777788899999999999999999876
No 316
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=27.37 E-value=85 Score=31.81 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 290 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 290 (546)
......|...+..|+|.-|.+....++..+|++..+...++.+|.++|
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 345556666777778888888888777778877777777777776554
No 317
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.77 E-value=2.7e+02 Score=23.26 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHHHhcCcccHH--------HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC
Q 009045 221 PEELEEILSKLKESMQSDTRQAV--------VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 291 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 291 (546)
.-=++.|+..++.+-+..+-... +-...-.++++.|.|++|.+.+++....++.+......|..+-....-
T Consensus 85 lTPLESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 85 LTPLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred CChHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Confidence 34467888888777665532111 111233456788999999999999988777666666666665544433
No 318
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=26.72 E-value=1.5e+02 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
..++..+|++|...|++++|+.+.++++..
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 567888999999999999999999998864
No 319
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=26.44 E-value=1.8e+02 Score=20.89 Aligned_cols=69 Identities=14% Similarity=-0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChH
Q 009045 449 AGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 528 (546)
Q Consensus 449 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 528 (546)
..++..+...+. +++....+.. .+...|+|++|....+..- .++.--.++.|-.+.|-.+
T Consensus 27 ~tIAdwL~~~~~-~E~v~lIR~s--------------SLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s 86 (116)
T 2p58_C 27 NCIAEWLHLKGE-EEAVQLIRLS--------------SLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGS 86 (116)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHH--------------HHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHH--------------HHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHH
Q ss_pred HHHHHHHHH
Q 009045 529 SSGKCLEKV 537 (546)
Q Consensus 529 ~A~~~~~~a 537 (546)
++...+.+.
T Consensus 87 ~le~rL~~l 95 (116)
T 2p58_C 87 ALESRLNRL 95 (116)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 320
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=25.91 E-value=3e+02 Score=23.31 Aligned_cols=47 Identities=11% Similarity=0.007 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHH-----hCCCCHHH---HHHHHHH-HHhcCChHHHHHHHHHHHH
Q 009045 493 VNVAKECLLAALK-----ADPKAAHI---WANLANA-YYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 493 ~~~A~~~~~~al~-----~~p~~~~~---~~~lg~~-~~~~g~~~~A~~~~~~al~ 539 (546)
.+.|...|+.|++ +.|.+|.- ..+.+.. |..+++.++|...-++|++
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567777777774 56777632 2333333 4568999998877666654
No 321
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=25.84 E-value=1.8e+02 Score=20.93 Aligned_cols=69 Identities=10% Similarity=-0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChH
Q 009045 449 AGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 528 (546)
Q Consensus 449 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 528 (546)
..++..+...+. +++....+.. .+...|+|++|....+..- .++.--.++.|-.+.|-.+
T Consensus 26 ~tIAdwL~~~~~-~E~v~lIR~s--------------SLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s 85 (115)
T 2uwj_G 26 LCIAEWLERLGQ-DEAARLIRIS--------------SLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGA 85 (115)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHH--------------HHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHH--------------HHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHH
Q ss_pred HHHHHHHHH
Q 009045 529 SSGKCLEKV 537 (546)
Q Consensus 529 ~A~~~~~~a 537 (546)
++...+.+.
T Consensus 86 ~le~rL~~l 94 (115)
T 2uwj_G 86 ALDRRLAGL 94 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 322
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=25.18 E-value=1e+02 Score=31.17 Aligned_cols=50 Identities=12% Similarity=-0.045 Sum_probs=42.6
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH
Q 009045 480 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 529 (546)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 529 (546)
....|...+..|+|.-|.+....++..+|+|..+...++.+|.++|.-.+
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 44456677789999999999999999999999999999999988875443
No 323
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.31 E-value=1.7e+02 Score=28.02 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
..++..+|++|...|++++|..+.++++..
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 567788888888889999999888888864
No 324
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=23.71 E-value=3e+02 Score=22.43 Aligned_cols=62 Identities=11% Similarity=-0.006 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHh-------cCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLA-------VDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.....-++-+++.|+.+.|.+.++-+=. +-| ....-....+..+...|++.+|-..+..+..
T Consensus 109 ~aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 109 ESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3556678888999999999999886521 112 1234567788899999999999998888764
No 325
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.69 E-value=77 Score=25.99 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=28.7
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 291 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 291 (546)
.-.++++.|.+++|.+.+++....++.+......|..+-.....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC
Confidence 34567899999999999999988887777766666655544433
No 326
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=22.26 E-value=2e+02 Score=27.83 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
..++..+|++|...|++++|..+.++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 456777888888888888888888887764
No 327
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.24 E-value=8.7e+02 Score=26.95 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=37.6
Q ss_pred HHHHHhhHhc-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 262 ISVLSSLLAV-DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 262 ~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
.+.|.+.++. ++.+..+......-....++|-.|++++.++++-.| ..+.+..++.++.
T Consensus 1269 ~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~-~~~~~~~~~~~~~ 1328 (1354)
T 3lxu_X 1269 NELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKR-TRDHFVELAAING 1328 (1354)
T ss_dssp HHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence 3344444443 455555555444555578999999999999998776 4455555555443
No 328
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=21.19 E-value=1.8e+02 Score=27.87 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
..++..+|++|...|++++|..+.++++..
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 567888999999999999999999998864
No 329
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.15 E-value=4.5e+02 Score=23.54 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILL 182 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p 182 (546)
...|.-+...|++.+|+..|+.++..-|
T Consensus 106 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 133 (320)
T 3mkr_B 106 LQLCYQLTTVGKFEEAVEKFRSILLSVP 133 (320)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 4568888999999999999999998754
No 330
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=20.82 E-value=3.9e+02 Score=22.69 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHH-----hCCCCHHH---HHHHHHH-HHhcCChHHHHHHHHHHHH
Q 009045 493 VNVAKECLLAALK-----ADPKAAHI---WANLANA-YYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 493 ~~~A~~~~~~al~-----~~p~~~~~---~~~lg~~-~~~~g~~~~A~~~~~~al~ 539 (546)
.+.|...|+.|.+ +.|.+|.- ..+.+.. |..+++.++|...-++|++
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4667777777764 56777632 2333344 4578999998876665543
No 331
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.74 E-value=4.5e+02 Score=25.07 Aligned_cols=16 Identities=6% Similarity=-0.037 Sum_probs=7.0
Q ss_pred HHcCChhHHHHHHHHH
Q 009045 162 QRLGQPLKAVSSYEKA 177 (546)
Q Consensus 162 ~~~g~~~~A~~~~~~a 177 (546)
...+.+..|...|.+-
T Consensus 352 A~R~~LpGAd~L~~~~ 367 (494)
T 1bpo_A 352 AVRNNLAGAEELFARK 367 (494)
T ss_dssp HHHTTCSSCHHHHHHH
T ss_pred HHhcCCccHHHHHHHH
Confidence 3344444444444443
Done!