Query 009047
Match_columns 545
No_of_seqs 156 out of 186
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 19:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3691 Exocyst complex subuni 100.0 1.3E-45 2.8E-50 406.3 30.6 368 16-510 26-414 (982)
2 PF04048 Sec8_exocyst: Sec8 ex 100.0 6.4E-33 1.4E-37 256.8 16.6 137 15-151 1-142 (142)
3 PF10475 DUF2450: Protein of u 99.7 3.4E-16 7.4E-21 160.9 21.7 186 20-207 1-191 (291)
4 KOG2115 Vacuolar sorting prote 99.3 1.3E-10 2.8E-15 131.2 21.1 203 6-208 181-402 (951)
5 PF06248 Zw10: Centromere/kine 98.1 0.00013 2.7E-09 82.5 19.4 173 42-214 7-184 (593)
6 PF15469 Sec5: Exocyst complex 98.1 0.00014 3.1E-09 69.9 15.9 141 63-204 2-148 (182)
7 PF04100 Vps53_N: Vps53-like, 98.0 0.00054 1.2E-08 73.8 19.7 179 30-209 2-185 (383)
8 PF04124 Dor1: Dor1-like famil 97.8 0.0021 4.7E-08 67.8 19.7 165 48-216 13-177 (338)
9 KOG2176 Exocyst complex, subun 97.4 0.0091 2E-07 68.5 18.9 173 36-209 35-207 (800)
10 PF10392 COG5: Golgi transport 97.2 0.012 2.6E-07 54.2 14.0 93 26-118 2-102 (132)
11 PF06148 COG2: COG (conserved 97.1 0.00055 1.2E-08 62.9 4.5 123 29-151 10-132 (133)
12 KOG2180 Late Golgi protein sor 96.6 0.15 3.2E-06 58.3 18.9 194 18-212 5-203 (793)
13 KOG2069 Golgi transport comple 96.2 0.27 5.9E-06 55.1 18.0 170 36-207 23-194 (581)
14 KOG2346 Uncharacterized conser 95.4 0.12 2.5E-06 57.0 10.9 185 27-217 28-215 (636)
15 PF08700 Vps51: Vps51/Vps67; 94.3 0.6 1.3E-05 39.3 10.4 78 29-106 3-83 (87)
16 PF10191 COG7: Golgi complex c 93.8 9 0.0002 45.3 22.3 181 26-208 4-195 (766)
17 KOG2307 Low density lipoprotei 91.5 24 0.00052 40.1 20.1 136 3-144 10-152 (705)
18 KOG0412 Golgi transport comple 89.8 18 0.0004 42.0 17.7 160 46-208 35-204 (773)
19 PF09763 Sec3_C: Exocyst compl 89.5 12 0.00026 43.6 16.7 148 61-208 10-179 (701)
20 KOG1961 Vacuolar sorting prote 85.7 74 0.0016 36.6 20.1 185 12-208 18-215 (683)
21 PRK11637 AmiB activator; Provi 79.8 69 0.0015 35.0 16.1 146 46-197 44-190 (428)
22 PF02601 Exonuc_VII_L: Exonucl 78.6 69 0.0015 33.4 15.1 74 49-122 147-226 (319)
23 PF04129 Vps52: Vps52 / Sac2 f 77.2 87 0.0019 35.3 16.2 129 81-209 14-154 (508)
24 PF07899 Frigida: Frigida-like 77.2 7.7 0.00017 40.7 7.4 80 114-199 147-226 (290)
25 KOG2033 Low density lipoprotei 71.0 44 0.00096 39.0 11.7 103 63-168 38-140 (863)
26 PF12854 PPR_1: PPR repeat 70.8 8.2 0.00018 27.0 4.0 28 313-341 5-32 (34)
27 TIGR00996 Mtu_fam_mce virulenc 70.3 1.2E+02 0.0025 31.1 14.1 107 12-122 128-236 (291)
28 PRK10869 recombination and rep 68.9 2.2E+02 0.0047 32.6 17.8 24 183-206 358-385 (553)
29 PF06008 Laminin_I: Laminin Do 68.0 1.5E+02 0.0032 30.3 17.0 168 16-198 22-196 (264)
30 PTZ00464 SNF-7-like protein; P 67.0 1.3E+02 0.0029 30.1 13.1 73 129-208 75-147 (211)
31 KOG2211 Predicted Golgi transp 63.0 3.1E+02 0.0067 32.3 16.6 140 44-190 70-218 (797)
32 TIGR03185 DNA_S_dndD DNA sulfu 62.9 1.1E+02 0.0024 35.3 13.5 31 182-212 492-522 (650)
33 KOG2273 Membrane coat complex 61.7 2.7E+02 0.0058 31.1 16.1 49 48-97 280-328 (503)
34 PF10136 SpecificRecomb: Site- 61.5 87 0.0019 36.6 12.0 49 59-107 187-236 (643)
35 PF10186 Atg14: UV radiation r 60.8 1.9E+02 0.0042 29.2 13.6 83 48-133 26-108 (302)
36 PF08317 Spc7: Spc7 kinetochor 60.7 2E+02 0.0044 30.3 13.9 80 113-194 206-290 (325)
37 cd07600 BAR_Gvp36 The Bin/Amph 57.2 2.3E+02 0.005 29.0 13.1 142 61-208 79-242 (242)
38 PF05266 DUF724: Protein of un 57.0 85 0.0018 31.0 9.6 24 1-24 18-41 (190)
39 KOG0994 Extracellular matrix g 56.2 5.1E+02 0.011 32.6 21.0 66 64-129 1567-1632(1758)
40 PRK14140 heat shock protein Gr 56.2 49 0.0011 32.7 7.7 54 126-182 88-142 (191)
41 cd07615 BAR_Endophilin_A3 The 56.1 2.3E+02 0.0051 28.7 17.6 108 45-152 84-199 (223)
42 KOG2148 Exocyst protein Sec3 [ 54.8 1.4E+02 0.003 35.0 11.8 154 59-213 196-367 (867)
43 cd07616 BAR_Endophilin_B1 The 53.7 2.6E+02 0.0056 28.5 13.1 140 62-206 71-227 (229)
44 cd07665 BAR_SNX1 The Bin/Amphi 53.6 2.6E+02 0.0057 28.5 14.2 122 46-173 77-198 (234)
45 cd07592 BAR_Endophilin_A The B 51.4 2E+02 0.0043 29.1 11.4 139 62-208 66-220 (223)
46 cd07614 BAR_Endophilin_A2 The 51.1 2.8E+02 0.0061 28.1 20.2 134 16-152 46-199 (223)
47 PF15290 Syntaphilin: Golgi-lo 50.8 2.7E+02 0.0058 29.4 12.2 51 85-135 114-164 (305)
48 KOG2196 Nuclear porin [Nuclear 50.3 1.4E+02 0.003 30.8 9.9 78 62-153 73-151 (254)
49 KOG2347 Sec5 subunit of exocys 48.8 1.7E+02 0.0036 35.3 11.6 170 27-202 166-350 (934)
50 PLN03094 Substrate binding sub 48.3 4E+02 0.0087 29.1 14.6 33 138-170 336-368 (370)
51 PRK00286 xseA exodeoxyribonucl 47.4 2.5E+02 0.0054 30.8 12.4 60 48-107 263-324 (438)
52 PF11887 DUF3407: Protein of u 46.9 3.4E+02 0.0075 27.9 12.7 89 69-173 47-137 (267)
53 PRK14160 heat shock protein Gr 46.2 1.6E+02 0.0034 29.7 9.7 49 127-181 113-162 (211)
54 PF09325 Vps5: Vps5 C terminal 45.7 3E+02 0.0065 26.9 15.3 96 46-141 79-175 (236)
55 PF04156 IncA: IncA protein; 44.7 2.9E+02 0.0063 26.4 12.8 9 115-123 164-172 (191)
56 cd07613 BAR_Endophilin_A1 The 44.1 3.6E+02 0.0078 27.4 17.1 120 45-166 84-211 (223)
57 KOG2216 Conserved coiled/coile 42.8 3.2E+02 0.007 28.8 11.4 138 52-197 14-171 (303)
58 PHA02562 46 endonuclease subun 42.0 3.7E+02 0.0081 30.0 13.0 15 182-196 304-318 (562)
59 KOG3501 Molecular chaperone Pr 41.9 2.4E+02 0.0052 25.6 8.9 78 82-159 4-94 (114)
60 PF04048 Sec8_exocyst: Sec8 ex 41.1 2.7E+02 0.0058 25.9 9.9 85 46-133 23-114 (142)
61 PHA02562 46 endonuclease subun 39.0 1.7E+02 0.0036 32.7 9.7 6 5-10 102-107 (562)
62 TIGR00634 recN DNA repair prot 38.7 6.4E+02 0.014 28.7 18.8 44 88-131 273-316 (563)
63 PRK14162 heat shock protein Gr 38.5 1.5E+02 0.0032 29.5 8.0 53 127-182 91-144 (194)
64 PRK09841 cryptic autophosphory 38.4 5.2E+02 0.011 30.5 13.8 39 86-124 309-347 (726)
65 PRK04778 septation ring format 38.0 6.6E+02 0.014 28.7 15.6 107 74-183 369-475 (569)
66 cd07665 BAR_SNX1 The Bin/Amphi 37.8 3.3E+02 0.0071 27.8 10.6 75 46-126 26-100 (234)
67 PRK14154 heat shock protein Gr 37.4 2.4E+02 0.0053 28.3 9.4 53 126-181 103-157 (208)
68 PF12128 DUF3584: Protein of u 37.4 6.8E+02 0.015 31.4 15.3 79 40-118 761-853 (1201)
69 KOG4182 Uncharacterized conser 37.1 6.6E+02 0.014 28.7 13.2 142 65-208 54-199 (828)
70 cd07623 BAR_SNX1_2 The Bin/Amp 36.9 4.4E+02 0.0095 26.3 15.8 152 49-206 19-185 (224)
71 KOG3745 Exocyst subunit - Sec1 36.0 6.2E+02 0.013 30.3 13.5 163 30-207 47-219 (763)
72 KOG2176 Exocyst complex, subun 35.7 6.7E+02 0.014 30.1 13.7 124 58-212 46-173 (800)
73 TIGR00237 xseA exodeoxyribonuc 34.0 6.5E+02 0.014 27.8 13.0 61 48-108 258-320 (432)
74 PF09325 Vps5: Vps5 C terminal 34.0 4.6E+02 0.0099 25.6 15.2 45 51-96 33-77 (236)
75 PF09602 PhaP_Bmeg: Polyhydrox 34.0 4.5E+02 0.0098 25.6 12.5 16 13-28 3-18 (165)
76 KOG0612 Rho-associated, coiled 33.9 7.9E+02 0.017 31.1 14.3 69 84-154 528-596 (1317)
77 cd07617 BAR_Endophilin_B2 The 33.7 5.2E+02 0.011 26.2 16.9 78 46-123 90-168 (220)
78 COG3352 FlaC Putative archaeal 33.5 4.5E+02 0.0097 25.4 10.6 49 64-112 90-139 (157)
79 cd07624 BAR_SNX7_30 The Bin/Am 33.4 4.7E+02 0.01 25.6 16.1 72 46-117 67-138 (200)
80 COG4477 EzrA Negative regulato 33.1 8.1E+02 0.018 28.2 16.0 92 75-182 126-219 (570)
81 PRK10884 SH3 domain-containing 32.4 5.2E+02 0.011 25.8 11.4 61 46-113 90-150 (206)
82 PF08393 DHC_N2: Dynein heavy 32.4 2.2E+02 0.0047 30.5 8.9 96 15-113 143-239 (408)
83 PF04108 APG17: Autophagy prot 32.3 7.1E+02 0.015 27.3 15.5 52 70-121 286-337 (412)
84 PRK09039 hypothetical protein; 32.1 6.6E+02 0.014 26.9 14.6 46 68-113 117-162 (343)
85 TIGR00606 rad50 rad50. This fa 31.8 1.2E+03 0.025 29.7 17.6 168 4-199 379-547 (1311)
86 PF13514 AAA_27: AAA domain 31.7 3.8E+02 0.0083 33.2 11.8 152 4-157 67-236 (1111)
87 PF03357 Snf7: Snf7; InterPro 31.3 3E+02 0.0066 25.4 8.7 89 105-195 29-119 (171)
88 PF08385 DHC_N1: Dynein heavy 30.8 7.9E+02 0.017 27.4 14.0 196 4-206 254-453 (579)
89 KOG1029 Endocytic adaptor prot 30.5 9.6E+02 0.021 29.1 13.6 53 83-135 453-505 (1118)
90 PF06160 EzrA: Septation ring 30.0 8.8E+02 0.019 27.7 18.5 80 82-171 123-203 (560)
91 COG1463 Ttg2C ABC-type transpo 29.9 7.1E+02 0.015 26.6 13.1 62 63-124 165-226 (359)
92 COG1463 Ttg2C ABC-type transpo 29.8 7.2E+02 0.016 26.6 14.1 129 8-157 136-264 (359)
93 KOG0963 Transcription factor/C 29.8 9.6E+02 0.021 28.1 17.4 123 69-205 230-354 (629)
94 PF07393 Sec10: Exocyst comple 29.7 5.4E+02 0.012 30.1 12.1 122 76-214 1-128 (710)
95 PF13870 DUF4201: Domain of un 29.2 5.1E+02 0.011 24.7 13.6 97 64-160 53-156 (177)
96 PRK14148 heat shock protein Gr 28.9 2.8E+02 0.006 27.6 8.2 54 126-182 91-145 (195)
97 PRK04778 septation ring format 28.8 9.2E+02 0.02 27.5 15.8 34 138-171 174-207 (569)
98 PF04740 LXG: LXG domain of WX 28.7 4.5E+02 0.0097 25.3 9.6 26 99-124 142-167 (204)
99 cd07596 BAR_SNX The Bin/Amphip 28.5 5.1E+02 0.011 24.5 16.0 79 47-125 62-140 (218)
100 PTZ00446 vacuolar sorting prot 28.1 6.1E+02 0.013 25.2 13.3 95 107-208 57-153 (191)
101 TIGR03545 conserved hypothetic 27.8 2.8E+02 0.0061 31.9 9.1 12 136-147 251-262 (555)
102 PF02050 FliJ: Flagellar FliJ 27.3 3.8E+02 0.0082 22.6 10.1 53 79-131 43-95 (123)
103 PF12729 4HB_MCP_1: Four helix 27.2 4.5E+02 0.0097 23.4 12.4 71 99-169 79-149 (181)
104 cd07610 FCH_F-BAR The Extended 27.0 5.3E+02 0.012 24.2 14.3 35 152-186 123-157 (191)
105 PF08317 Spc7: Spc7 kinetochor 27.0 7.7E+02 0.017 26.0 13.7 136 46-182 160-299 (325)
106 KOG2460 Signal recognition par 26.4 1E+03 0.023 27.4 15.7 121 47-173 299-454 (593)
107 cd08315 Death_TRAILR_DR4_DR5 D 26.0 1.4E+02 0.003 26.1 5.0 87 67-157 4-96 (96)
108 PF04124 Dor1: Dor1-like famil 25.8 8.1E+02 0.018 25.9 12.3 80 60-142 57-136 (338)
109 KOG2307 Low density lipoprotei 25.8 2.1E+02 0.0046 33.0 7.3 56 54-109 48-103 (705)
110 PF07139 DUF1387: Protein of u 25.8 6.7E+02 0.015 26.7 10.7 24 140-163 244-267 (302)
111 PRK14151 heat shock protein Gr 25.5 2.6E+02 0.0057 27.2 7.3 55 126-182 71-126 (176)
112 PF07851 TMPIT: TMPIT-like pro 25.5 7.3E+02 0.016 26.8 11.1 30 427-456 211-240 (330)
113 PRK11519 tyrosine kinase; Prov 25.5 1.2E+03 0.025 27.6 15.1 37 86-122 309-345 (719)
114 COG5491 VPS24 Conserved protei 25.3 7.1E+02 0.015 25.0 13.5 80 73-152 23-105 (204)
115 KOG4643 Uncharacterized coiled 25.2 1.4E+03 0.031 28.5 14.9 68 75-142 468-539 (1195)
116 PRK14139 heat shock protein Gr 24.9 3.5E+02 0.0076 26.7 8.0 51 127-182 84-135 (185)
117 PF06160 EzrA: Septation ring 24.9 1.1E+03 0.023 27.0 17.7 124 52-183 347-471 (560)
118 PF11802 CENP-K: Centromere-as 24.6 2.2E+02 0.0048 29.8 6.8 143 17-167 83-248 (268)
119 cd07664 BAR_SNX2 The Bin/Amphi 24.5 7.5E+02 0.016 25.1 12.5 157 25-206 21-195 (234)
120 KOG2911 Uncharacterized conser 24.3 5.5E+02 0.012 28.7 10.0 101 49-157 265-365 (439)
121 PF15619 Lebercilin: Ciliary p 24.3 7E+02 0.015 24.6 12.3 95 51-145 14-118 (194)
122 PRK15374 pathogenicity island 24.0 1.2E+03 0.025 27.1 15.1 135 56-191 124-287 (593)
123 PRK14146 heat shock protein Gr 24.0 3.3E+02 0.0073 27.4 7.8 52 127-181 106-158 (215)
124 PRK03918 chromosome segregatio 23.8 1.3E+03 0.027 27.5 15.8 6 320-325 831-836 (880)
125 PF00015 MCPsignal: Methyl-acc 23.7 6.2E+02 0.013 23.8 13.1 81 48-128 81-161 (213)
126 KOG0796 Spliceosome subunit [R 23.5 6.3E+02 0.014 27.1 10.0 76 82-169 84-159 (319)
127 PF06840 DUF1241: Protein of u 23.0 87 0.0019 30.0 3.3 38 327-364 92-131 (154)
128 COG4064 MtrG Tetrahydromethano 22.7 2E+02 0.0043 24.2 4.8 35 48-82 14-48 (75)
129 PF13949 ALIX_LYPXL_bnd: ALIX 22.6 8.2E+02 0.018 24.8 13.5 44 69-113 11-54 (296)
130 PF01601 Corona_S2: Coronaviru 22.4 3.4E+02 0.0074 31.5 8.3 85 72-165 253-338 (610)
131 PF01025 GrpE: GrpE; InterPro 22.3 2.7E+02 0.006 25.9 6.6 17 128-144 64-80 (165)
132 TIGR02606 antidote_CC2985 puta 22.2 78 0.0017 26.0 2.5 30 146-175 12-41 (69)
133 PF11945 WASH_WAHD: WAHD domai 22.1 2.7E+02 0.0058 29.5 7.0 28 83-110 38-65 (297)
134 PF06419 COG6: Conserved oligo 22.1 1.3E+03 0.028 26.8 18.6 77 60-136 24-100 (618)
135 PF03357 Snf7: Snf7; InterPro 21.7 6E+02 0.013 23.3 8.8 105 47-152 13-127 (171)
136 smart00188 IL10 Interleukin-10 21.0 6.9E+02 0.015 23.6 8.7 32 82-113 65-96 (137)
137 PRK11281 hypothetical protein; 20.8 1.5E+03 0.033 28.5 13.9 57 157-213 196-255 (1113)
138 PRK14163 heat shock protein Gr 20.6 8.9E+02 0.019 24.5 10.2 48 125-182 90-138 (214)
139 PF05615 THOC7: Tho complex su 20.0 6.7E+02 0.015 22.9 10.5 68 47-114 44-114 (139)
No 1
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-45 Score=406.26 Aligned_cols=368 Identities=23% Similarity=0.248 Sum_probs=284.8
Q ss_pred HHHHHHHhHhhhCCCCCCchhHHHhhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009047 16 LREELARIEVSWVAPRFDSLPHVVHILTS--KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES 93 (545)
Q Consensus 16 l~evL~~I~~eW~~~~fd~l~~vl~lLss--~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~S 93 (545)
..+...+|...|. .+.+. .+||.++++|++.++..+.+|+++|++|+|+|++.|.+|++|++.|+.|
T Consensus 26 sn~~G~lInvi~n-----------L~~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~ 94 (982)
T KOG3691|consen 26 SNELGLLINVIRN-----------LVGSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNC 94 (982)
T ss_pred ccccchhhhHHHh-----------hccCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666 33332 3899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcc
Q 009047 94 AESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (545)
Q Consensus 94 q~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~ 173 (545)
|++|.+||++|.+||++|+|+|++|++||.++.+|++||++|++||+++++|++||.+|++|+|++|.++|.+++.++++
T Consensus 95 rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng 174 (982)
T KOG3691|consen 95 RERIHNVKNNLEACKELLNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNG 174 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHhHhcCCCcccccccccccCCCCccchhcccccCCCCCccccccccCC
Q 009047 174 EGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKGD 253 (545)
Q Consensus 174 ~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~lYlK~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~q~~~~~t~~~~~ 253 (545)
+ |.+|..|+|||++|+.+++.|+++|+||||+++|.|+....-. + +-+.+ |++
T Consensus 175 ~-L~~VEgLs~l~~ele~~~~~L~~~L~eELv~ily~ks~~~~l~-~-~~~~~----------------~~~-------- 227 (982)
T KOG3691|consen 175 P-LDGVEGLSDLRSELEGLLSHLEDILIEELVSILYLKSVAYPLV-S-YCRTN----------------PLS-------- 227 (982)
T ss_pred c-chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHH-h-hhcCC----------------chh--------
Confidence 6 9999999999999999999999999999999999997531110 0 00111 111
Q ss_pred CCCCccccCCCCCCc-cCCCCCCCCCccccccccccccccccc-----cCC----Cch--HHHHHhhcC-CcchhHHHHH
Q 009047 254 NQFGVHGLADGSHSS-TFDGHDEDGSLEAHDETSLDGLSIGWL-----ANS----TPD--EFVEAIRKS-DAPLHVKYLQ 320 (545)
Q Consensus 254 ~q~~~~~~~~~~~sl-~~~~~~~~~~~~~~d~~~~s~~i~~fl-----s~~----~~~--~~~ed~~~n-~~~~sf~Yi~ 320 (545)
+.+ +|. ||.++.+....++.+-+-+ ++. +.+ ...+++.-. |++.+-.+..
T Consensus 228 ------------s~l~~~~-----~~~in~t~l~~sr~~~ea~~~k~~~g~~sv~~~~~~~~~~~l~~~~pe~~sslf~~ 290 (982)
T KOG3691|consen 228 ------------SRLNDFL-----YNNINTTTLGTSRQLLEALCHKSDAGSGSVRDIRIVLEKEDLLLSLPEANSSLFRR 290 (982)
T ss_pred ------------hHHHHHh-----hcccCccccCccHHHHHHHHHHhhcCCcchhhHHHHHhhccccccchhhHHHHHHH
Confidence 111 222 3444444333333331110 000 000 111222223 6667777888
Q ss_pred HHHHHHHhhCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhcchhhhccccccCccccccccccccccccccccccCC
Q 009047 321 TMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNG 400 (545)
Q Consensus 321 ~llesL~~LgKL~~Al~~i~qRl~~Elh~lV~~ti~e~~~~~~~s~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 400 (545)
.+++.++++.|+|.++.+|..|+.+|++++|.+++..+....+..+ +..+ +
T Consensus 291 il~k~~~~~~k~p~~~n~i~~~~~~el~niv~kSt~~i~~~g~~~~---------------------------e~at-~- 341 (982)
T KOG3691|consen 291 ILEKFTTVDSKSPAIVNKISERINVELVNIVSKSTYDISLSGETDR---------------------------EHAT-F- 341 (982)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccchhhhccccchh---------------------------hhhh-c-
Confidence 9999999999999999999999999999999776665542222100 0000 0
Q ss_pred cccccccccccccccccCcCCchHHHHHHHHHHHHHHHHHHHhhhHHHHH------HHHHhhccCCCCCCcccccCCCCC
Q 009047 401 ISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGE------LLESRSSRHDINTPKSMIADANWN 474 (545)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~il~el~~slf~k~~avle~h~vv~e------v~~~~~~r~~~~~~~~~~~~~~~~ 474 (545)
+...-+|.++||-||.||.++.+.|+++.+ ++....++.
T Consensus 342 --------------------~tn~f~L~ell~~if~kf~a~aq~Ha~~~~~s~~~~vv~P~~sq~--------------- 386 (982)
T KOG3691|consen 342 --------------------DTNHFMLLELLEEIFTKFEAAAQKHASSLHKSLQNDVVSPKVSQK--------------- 386 (982)
T ss_pred --------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCC---------------
Confidence 112239999999999999999999999998 444443332
Q ss_pred CCCCcccccCcchhhhhHHHHHHHHHHHHHHhhcCc
Q 009047 475 PDSEASVTGGYSIGFSMTVLQSECQQLICEILRATP 510 (545)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~qsE~~~Ll~~yl~~~~ 510 (545)
..|.+..+|..+|+|++-|+-+||-..+
T Consensus 387 --------d~f~~~~~W~k~qs~ielllsE~i~~nn 414 (982)
T KOG3691|consen 387 --------DTFDFTDFWQKAQSEIELLLSEYIDNNN 414 (982)
T ss_pred --------CcccHHHHHHHHHHHHHHHHHHHhccCC
Confidence 1478899999999999999999996543
No 2
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=100.00 E-value=6.4e-33 Score=256.84 Aligned_cols=137 Identities=40% Similarity=0.604 Sum_probs=132.8
Q ss_pred HHHHHHHHhHhhhCC---CCCCchhHHHhhc--CCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 009047 15 YLREELARIEVSWVA---PRFDSLPHVVHIL--TSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRL 89 (545)
Q Consensus 15 ~l~evL~~I~~eW~~---~~fd~l~~vl~lL--ss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~ 89 (545)
.|+++|+.|+++|++ ++|+|+.++|.+| ++.++++++++|++.++.++++|+++|++||++||++|++|+.|+..
T Consensus 1 ~l~~~l~~I~~~W~~~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~ 80 (142)
T PF04048_consen 1 ELDEVLNEIKDEWPFMLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSS 80 (142)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999997 8999999999999 45589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHH
Q 009047 90 FSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKL 151 (545)
Q Consensus 90 I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~l 151 (545)
|++||++|..+|+.|++||..|+|++++|++||.++++|++||++|++||+|+++|++||+|
T Consensus 81 i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~l 142 (142)
T PF04048_consen 81 ISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIESL 142 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999975
No 3
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=99.73 E-value=3.4e-16 Score=160.85 Aligned_cols=186 Identities=19% Similarity=0.288 Sum_probs=175.6
Q ss_pred HHHhHhhhCCCCCCchhHHHhhcCCC-----chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 009047 20 LARIEVSWVAPRFDSLPHVVHILTSK-----DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESA 94 (545)
Q Consensus 20 L~~I~~eW~~~~fd~l~~vl~lLss~-----~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq 94 (545)
|++|++.|+.++|||..+.++-+... ..+...++|..+++.++..|...|.+||++|.+++++...|...+..+.
T Consensus 1 l~si~~~yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~ 80 (291)
T PF10475_consen 1 LESIPAIYFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEAL 80 (291)
T ss_pred CCCCcHhhcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999998655 3456678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHccc
Q 009047 95 ESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE 174 (545)
Q Consensus 95 ~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~ 174 (545)
..|+.+|+.|..++..+....-++.++..+++.+.++++.|..|..+++....|+.++++++|.+|.+++.++..+++
T Consensus 81 ~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~-- 158 (291)
T PF10475_consen 81 VICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLE-- 158 (291)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009047 175 GLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (545)
Q Consensus 175 eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~ 207 (545)
++.++.++++|+.+|+.....+-++|-.+|...
T Consensus 159 ~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~ 191 (291)
T PF10475_consen 159 ELKGYSCVRHLSSQLQETLELIEEQLDSDLSKV 191 (291)
T ss_pred hcccchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999988888654
No 4
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.3e-10 Score=131.22 Aligned_cols=203 Identities=13% Similarity=0.221 Sum_probs=179.4
Q ss_pred CCCCCCChHHHHHHHHHhHhhhCCCCCCc-----hhHHHh---h-cC----CCc--h----hHHHHHHHHHHHHHHHHHH
Q 009047 6 GLPISPEKAYLREELARIEVSWVAPRFDS-----LPHVVH---I-LT----SKD--R----EGEVQILKDQNDIIEEVVD 66 (545)
Q Consensus 6 ~~p~p~d~~~l~evL~~I~~eW~~~~fd~-----l~~vl~---l-Ls----s~~--~----E~~~~~Le~~~~~l~~~L~ 66 (545)
|.|.|..-......|+.|..-|..++|.- ...|+. + ++ +.+ + ..-.++|..++|.++-.|-
T Consensus 181 ~~~~~~~~~~~~~~l~sVPsiffk~dF~Lddp~TF~~V~~~id~t~~~~a~~~~~~~~~~~~~LQekLs~yLDvVE~~La 260 (951)
T KOG2115|consen 181 EADGPSTRGGDATDLSSVPSIFFKSDFQLDDPATFHSVLPAIDLTLTKTAMNRQAERLEANSALQEKLSHYLDVVELHLA 260 (951)
T ss_pred CCCCccccccchhhHHhCcchhcCCcccCCCcchHhhhccccccchhcccccCChhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 47778777788889999999998766532 222333 2 11 111 1 2334678889999999999
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHH
Q 009047 67 EVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPA 146 (545)
Q Consensus 67 ~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~ 146 (545)
.-|....+.|..+|.+++.++..+-++-+.|+.+|++|++........+..+.++..++.++.++++.|..|++|.+...
T Consensus 261 ~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~ 340 (951)
T KOG2115|consen 261 QEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQS 340 (951)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 009047 147 RIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (545)
Q Consensus 147 kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~l 208 (545)
++..++++.+|.+|.+++.....+|.+.+|.+|.++++||.|+....+++-.|+++|+...+
T Consensus 341 ~vq~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~~~ 402 (951)
T KOG2115|consen 341 TVQLLLSTQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREFSTYS 402 (951)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999779999999999999999999999999999997643
No 5
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.14 E-value=0.00013 Score=82.52 Aligned_cols=173 Identities=17% Similarity=0.279 Sum_probs=144.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHhccCcHHHH
Q 009047 42 LTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVD-L-AEAKRRLGTRNKQLH 119 (545)
Q Consensus 42 Lss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~-L-~~ak~~L~~r~~eL~ 119 (545)
|+..+.+....+|.+....+...+.+.|++||.+|-..+.+-.+++.....-...|..+.+. . ......|.....++.
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQ 86 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 45567788889999999999999999999999999999999999888877777777444433 1 233444555566777
Q ss_pred HHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcc---cCCCCcCccHHHHHHHHHhHHHH
Q 009047 120 QLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER---EGLQTVGALQDVRSELTKLRGVL 196 (545)
Q Consensus 120 ~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~---~eL~~I~AL~dLR~~L~~qe~~L 196 (545)
.|-.+-..-..++++|..|.++.+.=..++..+.+++|..|.++|.+....++. +.......++.|+.++..++..|
T Consensus 87 ~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L 166 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENL 166 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHH
Confidence 777777778888999999999999889999999999999999999999998886 34556789999999999999999
Q ss_pred HHHHHHHHHHhHhcCCCc
Q 009047 197 FYKVLEDLHAHLYNRGEY 214 (545)
Q Consensus 197 ~d~LiEELh~~lYlK~~~ 214 (545)
...|-++..+.+-.+.+.
T Consensus 167 ~~~L~~~w~~lv~~~~~~ 184 (593)
T PF06248_consen 167 QYQLSEEWERLVQWDSPS 184 (593)
T ss_pred HHHHHHHHHhheeecCCC
Confidence 999999999999887543
No 6
>PF15469 Sec5: Exocyst complex component Sec5
Probab=98.08 E-value=0.00014 Score=69.88 Aligned_cols=141 Identities=21% Similarity=0.244 Sum_probs=121.3
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHH
Q 009047 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES------IKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD 136 (545)
Q Consensus 63 ~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~------i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd 136 (545)
..|+.+|.+|+..|-++-.+-..|...+...... +..|.+.+..+......--..|.+-..+...++.++..|.
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999877765 8999999999999988888889999999999999999999
Q ss_pred hHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHHHHHHHHHHHH
Q 009047 137 QIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (545)
Q Consensus 137 ~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~L~d~LiEEL 204 (545)
.-+.+-.+|.+|...|..++|..|++-..++..+.+. ....+..++.+.++.+..-..+-+.|.+.|
T Consensus 82 r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~-~~~~~~vf~~v~~eve~ii~~~r~~l~~~L 148 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEK-YKQQVPVFQKVWSEVEKIIEEFREKLWEKL 148 (182)
T ss_pred HHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 223666777777776655555544444444
No 7
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.98 E-value=0.00054 Score=73.76 Aligned_cols=179 Identities=17% Similarity=0.301 Sum_probs=152.2
Q ss_pred CCCCchhHHHhhcCCC----chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009047 30 PRFDSLPHVVHILTSK----DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (545)
Q Consensus 30 ~~fd~l~~vl~lLss~----~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~ 105 (545)
++|||+.+.=.++... +...-...++.....++..+...|.++...=..+=.....+...|.+=-.+|..+|..=.
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999654 556677788888888899999999888744444445556667777777788888888888
Q ss_pred HHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcc-cCCCCcCccHH
Q 009047 106 EAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER-EGLQTVGALQD 184 (545)
Q Consensus 106 ~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~-~eL~~I~AL~d 184 (545)
.+...+..=..++++|=.....+...|.+|.-+.-|...=++++.++..++|.+++.+|.-...+++. ....+|+-+..
T Consensus 82 ~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~ 161 (383)
T PF04100_consen 82 ESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAE 161 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHH
Confidence 88888888889999999999999999999999999999999999999999999999998877776652 26789999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHh
Q 009047 185 VRSELTKLRGVLFYKVLEDLHAHLY 209 (545)
Q Consensus 185 LR~~L~~qe~~L~d~LiEELh~~lY 209 (545)
|...+...+..|.+.+.+++.. +|
T Consensus 162 L~~~i~~l~~~L~~qI~~df~~-~f 185 (383)
T PF04100_consen 162 LSKRIDQLQNELKEQIFEDFEE-LF 185 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 9999999999999999999975 45
No 8
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=97.78 E-value=0.0021 Score=67.83 Aligned_cols=165 Identities=13% Similarity=0.165 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhH
Q 009047 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (545)
Q Consensus 48 E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~ 127 (545)
..+.+.|.+....++..++.+...||..|-.+=.....+...+.+..+.+..+...|.+-......-.....+.......
T Consensus 13 ~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~ 92 (338)
T PF04124_consen 13 FSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKK 92 (338)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999999999999999999999999999999999999999977666655555555666666666
Q ss_pred HHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009047 128 LRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (545)
Q Consensus 128 ~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~ 207 (545)
...+++-.+.+-+|..+|.-++..|..++|.+|.++.....++..+ .-+++-++.+..+....-..+-..|+.-|+.-
T Consensus 93 ~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~--~~~~~lv~~i~~ev~~~~~~ml~~Li~~L~~~ 170 (338)
T PF04124_consen 93 ASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSR--FPNIPLVKSIAQEVEAALQQMLSQLINQLRTP 170 (338)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 7777777788888889999999999999999999998877766655 45688889999998887777777777777554
Q ss_pred HhcCCCccc
Q 009047 208 LYNRGEYSS 216 (545)
Q Consensus 208 lYlK~~~~~ 216 (545)
+|=+.|.
T Consensus 171 --l~l~~~i 177 (338)
T PF04124_consen 171 --LKLPACI 177 (338)
T ss_pred --ccHHHHH
Confidence 4444454
No 9
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0091 Score=68.48 Aligned_cols=173 Identities=13% Similarity=0.195 Sum_probs=136.0
Q ss_pred hHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 009047 36 PHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRN 115 (545)
Q Consensus 36 ~~vl~lLss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~ 115 (545)
|.+-+++.....+.-+.+|+.--..=++.+..+-+.|||+|-.+|.--.++.+..++=+..|...-..|.++-..|-...
T Consensus 35 P~lRs~~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~ 114 (800)
T KOG2176|consen 35 PTLRSVYDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKK 114 (800)
T ss_pred hHHHHHHccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 44445555556677777777666666899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHHH
Q 009047 116 KQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGV 195 (545)
Q Consensus 116 ~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~ 195 (545)
.+|.+...-+......++.|...=.+...=.|..++|++|+|+.|.+.+. ++...-=+.+.+..=+..+-.+.-..+..
T Consensus 115 e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle-~lE~~yL~~~~~~~~~~~i~~~Ip~ik~~ 193 (800)
T KOG2176|consen 115 EDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLE-SLEKVYLPRVSNFRFLIVIQNRIPFIKEV 193 (800)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHhcccchhhHHHhhcchHHHHH
Confidence 99999999999888888888887777788899999999999999998743 44433223444444444445555566667
Q ss_pred HHHHHHHHHHHhHh
Q 009047 196 LFYKVLEDLHAHLY 209 (545)
Q Consensus 196 L~d~LiEELh~~lY 209 (545)
+-++...++++-+.
T Consensus 194 i~~~~~~~~~e~L~ 207 (800)
T KOG2176|consen 194 IKSKSMSDFREWLE 207 (800)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777664
No 10
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.18 E-value=0.012 Score=54.21 Aligned_cols=93 Identities=11% Similarity=0.226 Sum_probs=72.5
Q ss_pred hhCCCCCCchhHHHhhcC--------CCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009047 26 SWVAPRFDSLPHVVHILT--------SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESI 97 (545)
Q Consensus 26 eW~~~~fd~l~~vl~lLs--------s~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i 97 (545)
.|-.|+|||..++=.+|. ..+....+.+|....+.+++.|+..|.+||..+-+....-......++.-+..+
T Consensus 2 ~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v 81 (132)
T PF10392_consen 2 AFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSV 81 (132)
T ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345699999999999996 446788899999999999999999999999999888777777666666666666
Q ss_pred HHHHHHHHHHHHHhccCcHHH
Q 009047 98 KELKVDLAEAKRRLGTRNKQL 118 (545)
Q Consensus 98 ~~lK~~L~~ak~~L~~r~~eL 118 (545)
..|..+...-+..+...-..+
T Consensus 82 ~~L~~s~~RL~~eV~~Py~~~ 102 (132)
T PF10392_consen 82 ESLQSSYERLRSEVIEPYEKI 102 (132)
T ss_pred HHHHHHHHHHHHHHhhHHHHH
Confidence 666666666665554443333
No 11
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=97.11 E-value=0.00055 Score=62.87 Aligned_cols=123 Identities=14% Similarity=0.173 Sum_probs=41.1
Q ss_pred CCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009047 29 APRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAK 108 (545)
Q Consensus 29 ~~~fd~l~~vl~lLss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak 108 (545)
.++|||-..+...-.-.+++.-...|....+.+...|-++||++|++|-+-=.+...+-..|..-+.-+..+++.+...+
T Consensus 10 ~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~ 89 (133)
T PF06148_consen 10 KPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVR 89 (133)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999888833455888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHH
Q 009047 109 RRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKL 151 (545)
Q Consensus 109 ~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~l 151 (545)
..+......+...-.......+....|..+-.+..+=.++|.+
T Consensus 90 ~~l~~~~~~i~~~l~~~~~l~~~k~~l~~~l~~~~~~~kle~l 132 (133)
T PF06148_consen 90 DELDNTQEEIEDKLEERKELREEKALLKLLLDISESLEKLEDL 132 (133)
T ss_dssp HS-STTHHHHHHHHHHHHHHHHHHHT-SSSSHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 9999999999888888887777777776666665555555554
No 12
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.15 Score=58.26 Aligned_cols=194 Identities=14% Similarity=0.244 Sum_probs=149.2
Q ss_pred HHHHHhHhhhCCCCCCchhHHHhhcCCC----chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009047 18 EELARIEVSWVAPRFDSLPHVVHILTSK----DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES 93 (545)
Q Consensus 18 evL~~I~~eW~~~~fd~l~~vl~lLss~----~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~S 93 (545)
+++..|....+-++|+.+.+.=.++... +.+.-.++++..-..+++.|+.+|..+.+.=.+.=-.-..+...|.+-
T Consensus 5 ~v~~~I~q~~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL 84 (793)
T KOG2180|consen 5 NVLYDINQMIPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEEL 84 (793)
T ss_pred hHHHHHHHhcCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 5777888888889999999999888543 667777788878888899999999866555444444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcc
Q 009047 94 AESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (545)
Q Consensus 94 q~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~ 173 (545)
-..|..+|..-+.....+..-..++++|=-....+..-|..|.-+.-|...=+++.++++++.|-+|+..+.--..+++-
T Consensus 85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~ 164 (793)
T KOG2180|consen 85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNH 164 (793)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHH
Confidence 55555555555555555555567788888888888888999999999999999999999999999999998877777762
Q ss_pred -cCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHhHhcCC
Q 009047 174 -EGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (545)
Q Consensus 174 -~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~lYlK~ 212 (545)
..-.+|+-+..|+..+...++.|...+.+.+.+. |.+.
T Consensus 165 F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~-F~~~ 203 (793)
T KOG2180|consen 165 FIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAA-FSGG 203 (793)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 1456889999999999999999999999998554 4443
No 13
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.27 Score=55.10 Aligned_cols=170 Identities=16% Similarity=0.223 Sum_probs=132.2
Q ss_pred hHHHhhcCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009047 36 PHVVHILTSK--DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGT 113 (545)
Q Consensus 36 ~~vl~lLss~--~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~ 113 (545)
.++..+.++. ....+...|-+....++..++.+--.+|..|-..=..++.|...++.++.....+--.+-+-.+....
T Consensus 23 ~~v~~l~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~s~~~~ 102 (581)
T KOG2069|consen 23 AYVRELTTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELTSPCKR 102 (581)
T ss_pred HHHHHHcCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhhhHHHH
Confidence 3555555543 45666677888889999999999999999999988899999999999988877766554443333333
Q ss_pred CcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhH
Q 009047 114 RNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLR 193 (545)
Q Consensus 114 r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe 193 (545)
-.+....+....-.-+.+++..+++-++..+|+.++..|...+|.+|.++..-+.++-++.+.. +..++++++....-
T Consensus 103 f~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~--pvi~~i~~~v~~tv 180 (581)
T KOG2069|consen 103 FQDFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTI--PVIQEIATEVEQTV 180 (581)
T ss_pred HHHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccc--hHHHHHHHHHHHHH
Confidence 3344455555555566778888899999999999999999999999999988888887775544 89999999998888
Q ss_pred HHHHHHHHHHHHHh
Q 009047 194 GVLFYKVLEDLHAH 207 (545)
Q Consensus 194 ~~L~d~LiEELh~~ 207 (545)
..|-+.|++-|..-
T Consensus 181 ~~ll~qL~~~l~~p 194 (581)
T KOG2069|consen 181 QKLLEQLIQQLRTP 194 (581)
T ss_pred HHHHHHHHHHHhhh
Confidence 88888888877543
No 14
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.12 Score=56.99 Aligned_cols=185 Identities=14% Similarity=0.087 Sum_probs=129.4
Q ss_pred hCCCCCCchhHHHhhcCCCchhHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 009047 27 WVAPRFDSLPHVVHILTSKDREGEVQILK---DQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVD 103 (545)
Q Consensus 27 W~~~~fd~l~~vl~lLss~~~E~~~~~Le---~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~ 103 (545)
-+.+.|||=-|+..++...+++.-++.=. .+-..++..++-+|.|+|+-|.++-.+..+|.+.+..--.....+-+.
T Consensus 28 lngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~ 107 (636)
T KOG2346|consen 28 LNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEV 107 (636)
T ss_pred cCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHH
Confidence 35689999999988886665543332222 233577999999999999999999888888888877766666666665
Q ss_pred HHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccH
Q 009047 104 LAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQ 183 (545)
Q Consensus 104 L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~ 183 (545)
..........-.+.|.+=...-.+....-.+|.++..+...|.++..-+....|=+|+..-..+...+..| .+.+..+
T Consensus 108 ms~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY--~~~psfq 185 (636)
T KOG2346|consen 108 MSSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQY--DGRPSFQ 185 (636)
T ss_pred HHHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhc--CCCCcHH
Confidence 55444443333333333333333333344567778888899999999999999999999877777777654 3455555
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHhcCCCcccc
Q 009047 184 DVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSA 217 (545)
Q Consensus 184 dLR~~L~~qe~~L~d~LiEELh~~lYlK~~~~~~ 217 (545)
+.+. -.+.++++++..|...+...+.-...
T Consensus 186 ~~~~----~seei~~rl~~qL~~rlr~~~sga~~ 215 (636)
T KOG2346|consen 186 EDDV----PSEEIRLRLVAQLGTKLRSDSSGAQA 215 (636)
T ss_pred Hhcc----chHHHHHHHHHHHHHHhccCCCCchh
Confidence 5544 34567888999999999887765443
No 15
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=94.30 E-value=0.6 Score=39.25 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=59.8
Q ss_pred CCCCCchhHHHhhcCCC---chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009047 29 APRFDSLPHVVHILTSK---DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (545)
Q Consensus 29 ~~~fd~l~~vl~lLss~---~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~ 105 (545)
.++|||-.++=.+|... ....-..+|.......+..|+.+|..||..|-.+-..-..+-..+..-+..+..++..+.
T Consensus 3 ~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~ 82 (87)
T PF08700_consen 3 SENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQ 82 (87)
T ss_pred CCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999998654 344555677788888899999999999999998877777766666666666666665554
Q ss_pred H
Q 009047 106 E 106 (545)
Q Consensus 106 ~ 106 (545)
.
T Consensus 83 ~ 83 (87)
T PF08700_consen 83 S 83 (87)
T ss_pred H
Confidence 3
No 16
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=93.84 E-value=9 Score=45.25 Aligned_cols=181 Identities=15% Similarity=0.180 Sum_probs=113.9
Q ss_pred hhCCCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHhHHHHHHHHHHHHHHHHHHH
Q 009047 26 SWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFN----KAIQNYSQILRLFSESAESIKELK 101 (545)
Q Consensus 26 eW~~~~fd~l~~vl~lLss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN----~sI~sy~~I~~~I~~Sq~~i~~lK 101 (545)
.+.+++||+..-+=..+.+.+.+....+++.....+..+|+-.+.+=...+- ..+.+-=.+...+..-+..+..+|
T Consensus 4 ~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~ 83 (766)
T PF10191_consen 4 AFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQ 83 (766)
T ss_pred hhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3456899999888888865544322233333233333333333322222222 222222345555555555555555
Q ss_pred HHHHHHHHHhccC-------cHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHccc
Q 009047 102 VDLAEAKRRLGTR-------NKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE 174 (545)
Q Consensus 102 ~~L~~ak~~L~~r-------~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~ 174 (545)
+.+...++.+..- -..|.+|-.-.......-+.|.+=+..-..-..|+.++..++|..+.+-|.+-.+-+.-
T Consensus 84 ~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~- 162 (766)
T PF10191_consen 84 EQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAV- 162 (766)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-
Confidence 5555555554221 13355555555556666667777788888899999999999999999988877776644
Q ss_pred CCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 009047 175 GLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (545)
Q Consensus 175 eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~l 208 (545)
|.+++-..+=|.+|+..++.|..++--.|...+
T Consensus 163 -l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al 195 (766)
T PF10191_consen 163 -LQDVPDYEERRQQLEALKNRLEALVSPQLVQAL 195 (766)
T ss_pred -HcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 778999999999999999988888766665554
No 17
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.53 E-value=24 Score=40.15 Aligned_cols=136 Identities=19% Similarity=0.207 Sum_probs=98.1
Q ss_pred CCCCCCCCCChHHHHHHHHHhHhhhCCCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 009047 3 IFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQN 82 (545)
Q Consensus 3 ~~~~~p~p~d~~~l~evL~~I~~eW~~~~fd~l~~vl~lLss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~s 82 (545)
.+.|-|..+++==.+ +.++..++||.=.++-..=..+++|.-.+.|+-+++.+..++=++||+-|.+|-+-=.+
T Consensus 10 ~~~g~~~d~~kLcFd------k~eFmkedFdve~f~s~~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStn 83 (705)
T KOG2307|consen 10 LPNGFYIDESKLCFD------KTEFMKEDFDVERFMSLARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTN 83 (705)
T ss_pred CCCCCCCCccccccC------hhhhccccCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 455555555444344 55666689986655544446778999999999999999999999999999999875554
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhcc
Q 009047 83 YSQ-------ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKV 144 (545)
Q Consensus 83 y~~-------I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~v 144 (545)
--. |..-|.+-++.|..+|+.+.++-..+..+..++..+....+.....+..+..||.|.++
T Consensus 84 LVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~ 152 (705)
T KOG2307|consen 84 LVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKM 152 (705)
T ss_pred hccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 44445555666666666777777777777778878877777777777777777776543
No 18
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.77 E-value=18 Score=42.01 Aligned_cols=160 Identities=9% Similarity=0.088 Sum_probs=108.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Q 009047 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTG--FN-KAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLW 122 (545)
Q Consensus 46 ~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~--FN-~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~ 122 (545)
..+..+..+......+++.|+.++.+-.+- +| ..|+.-... +.-.-....++...+......-..-++..+.|=
T Consensus 35 qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~~~---L~~v~~da~el~~~i~nt~~lAe~Vs~kVr~lD 111 (773)
T KOG0412|consen 35 QIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSAEN---LLTVEGDAKELTDAIKNTCVLAETVSGKVRALD 111 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhh---hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777788888999999999874332 44 444443333 222233333344444333333333467888899
Q ss_pred HHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHH----HcccCCCCcCccHHHHHHHH---HhHHH
Q 009047 123 YRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALM----LEREGLQTVGALQDVRSELT---KLRGV 195 (545)
Q Consensus 123 ~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~l----l~~~eL~~I~AL~dLR~~L~---~qe~~ 195 (545)
...-...+.++..++|-.++.+-+-+..-|..++|..|...+.+.+.+ +....-..+++...++..+. +-++.
T Consensus 112 la~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~~a~e~ 191 (773)
T KOG0412|consen 112 LAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLKEAKER 191 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887653 44433445556666655443 44456
Q ss_pred HHHHHHHHHHHhH
Q 009047 196 LFYKVLEDLHAHL 208 (545)
Q Consensus 196 L~d~LiEELh~~l 208 (545)
|...+-++++..+
T Consensus 192 L~~l~~~~f~eA~ 204 (773)
T KOG0412|consen 192 LSKLFKERFTEAV 204 (773)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
No 19
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=89.54 E-value=12 Score=43.59 Aligned_cols=148 Identities=12% Similarity=0.153 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH-------HHHHHHhhHHHHHHH
Q 009047 61 IEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL-------HQLWYRSVTLRHIIS 133 (545)
Q Consensus 61 l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL-------~~L~~~s~~~~~mL~ 133 (545)
+.+.|..+=..+-+.+-.+=..-..+...|.++...|..|-..|......|..-++++ ..|-.....++.+++
T Consensus 10 L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~ 89 (701)
T PF09763_consen 10 LSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLN 89 (701)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH
Confidence 3344444444444555556666778888888888888888888888888888888888 455666667777888
Q ss_pred HHHhHHHhhccHHHHHHHHhccCH---------HHHHHHHHHHHHH------HcccCCCCcCccHHHHHHHHHhHHHHHH
Q 009047 134 LLDQIEGIAKVPARIEKLIAGKQY---------YAAVQLHAQSALM------LEREGLQTVGALQDVRSELTKLRGVLFY 198 (545)
Q Consensus 134 iLd~Ie~L~~vP~kIe~lIseK~y---------l~Av~LL~~s~~l------l~~~eL~~I~AL~dLR~~L~~qe~~L~d 198 (545)
-|+.|=.-..+|+.-...+.+..+ ..|...|..|+.. -..+++..+.|+++=|..++.....+..
T Consensus 90 eL~~Ll~~l~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~~~F~~ 169 (701)
T PF09763_consen 90 ELENLLDTLSIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVSDKFCK 169 (701)
T ss_pred HHHHHHHhcCCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776666888888888877776 2355666667777 3335888899999999999988888888
Q ss_pred HHHHHHHHhH
Q 009047 199 KVLEDLHAHL 208 (545)
Q Consensus 199 ~LiEELh~~l 208 (545)
.+++.|.+.+
T Consensus 170 r~~~~l~~~F 179 (701)
T PF09763_consen 170 RLSRFLNNMF 179 (701)
T ss_pred HHHHHHHHHH
Confidence 8877776655
No 20
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=85.68 E-value=74 Score=36.61 Aligned_cols=185 Identities=16% Similarity=0.217 Sum_probs=108.6
Q ss_pred ChHHHHHHHHHhHhhhCCCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 009047 12 EKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFS 91 (545)
Q Consensus 12 d~~~l~evL~~I~~eW~~~~fd~l~~vl~lLss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~ 91 (545)
+-..+++++..+.....+ ..|-..|.+.+ .|++..+.++..|.++=...-|.|-+.=..-....+.|.
T Consensus 18 ~~~~le~~~~~~~~~~~~------e~v~~~lktg~------~lr~y~~~ve~~l~k~e~~Siqdyi~es~~~~~lhNqi~ 85 (683)
T KOG1961|consen 18 EDISLEEVLSQLQECLDD------ELVKEALKTGD------DLREYSKQVENELRKAERKSIQDYIKESENLASLHNQIR 85 (683)
T ss_pred hHHHHHHHHHHHHHhcch------HHHHHHHhcCC------cchHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhHhhhHH
Confidence 344466666666665551 12333443221 223334444555554444444444443334444445566
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHH-------HHH-hHHHhhccHHHHHHHHh----ccCHHH
Q 009047 92 ESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIIS-------LLD-QIEGIAKVPARIEKLIA----GKQYYA 159 (545)
Q Consensus 92 ~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~-------iLd-~Ie~L~~vP~kIe~lIs----eK~yl~ 159 (545)
.+...+.+|-..|..=...|+.-+.+++.|-.+|....--|+ -|. -|+.+---|+.|...+. +..|.+
T Consensus 86 ~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~I~~g~vne~~f~~ 165 (683)
T KOG1961|consen 86 ACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPELIKTIVDGDVNEPEFLE 165 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHHHHHHHHcCCCCchHHHH
Confidence 666666666666666666666666667666666654332222 222 24555555555555543 458999
Q ss_pred HHHHHHHHHHHHc-ccCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 009047 160 AVQLHAQSALMLE-REGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (545)
Q Consensus 160 Av~LL~~s~~ll~-~~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~l 208 (545)
|.+.|..=++..+ ..+..+-.|+.|++.-|+.++......+-+=|-.-|
T Consensus 166 ~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI 215 (683)
T KOG1961|consen 166 ALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKI 215 (683)
T ss_pred HHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777 668889999999999999888766555444443333
No 21
>PRK11637 AmiB activator; Provisional
Probab=79.85 E-value=69 Score=35.02 Aligned_cols=146 Identities=12% Similarity=0.182 Sum_probs=71.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHh
Q 009047 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (545)
Q Consensus 46 ~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s 125 (545)
..+.++..+++..+.+++.++.+=. ..+........+...|...+.++..+...+...+..+.....+|.++-.+-
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~----~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQ----QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555565555555555442222 222233334445555555555555555555555555555555555554443
Q ss_pred hHHHH-HHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHHHHH
Q 009047 126 VTLRH-IISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLF 197 (545)
Q Consensus 126 ~~~~~-mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~L~ 197 (545)
...+. +-+.+..+-.--..+ -++.+++...+-...+++ .-+..+...+..-|..+.+.+.+|..++..|-
T Consensus 120 ~~~~~~l~~rlra~Y~~g~~~-~l~vLl~a~~~~~~~r~~-~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le 190 (428)
T PRK11637 120 AAQERLLAAQLDAAFRQGEHT-GLQLILSGEESQRGERIL-AYFGYLNQARQETIAELKQTREELAAQKAELE 190 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCc-HHHHHhcCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 223333333333333 467777777664444322 12222333344556667777777776666654
No 22
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=78.61 E-value=69 Score=33.38 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHhccCcHHHHHHH
Q 009047 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQIL-----RLFSESAESIKELKVDLAE-AKRRLGTRNKQLHQLW 122 (545)
Q Consensus 49 ~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~-----~~I~~Sq~~i~~lK~~L~~-ak~~L~~r~~eL~~L~ 122 (545)
....+|++....+...++..+..+.+.++..-..+..-. ..+...++++..+++.|.. .+..|...+..|..+.
T Consensus 147 ~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l~ 226 (319)
T PF02601_consen 147 ELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNLS 226 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666666665555533 4567777777777777655 4555555555555554
No 23
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=77.22 E-value=87 Score=35.31 Aligned_cols=129 Identities=21% Similarity=0.345 Sum_probs=79.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHH-------HHHHHHHh-HHHhhccHHHHHHHH
Q 009047 81 QNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLR-------HIISLLDQ-IEGIAKVPARIEKLI 152 (545)
Q Consensus 81 ~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~-------~mL~iLd~-Ie~L~~vP~kIe~lI 152 (545)
..+..+-..|.+|.+.+..|.+.|..=+..|+.-+.++..|-.+|.... .+.+.|.. |+.+.=-|+-|...+
T Consensus 14 ~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I~ 93 (508)
T PF04129_consen 14 ENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSIC 93 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhHh
Confidence 3444445556666677777777777777777777777777766666533 34444544 455554455555554
Q ss_pred hcc---CHHH-HHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHhHh
Q 009047 153 AGK---QYYA-AVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209 (545)
Q Consensus 153 seK---~yl~-Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~lY 209 (545)
.+. +|.. +.+++.+-..........+..|.+|++..|+.++..-.+.+-+=|...|+
T Consensus 94 ~~~v~e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~ 154 (508)
T PF04129_consen 94 EGPVNEQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIK 154 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 3444 45665555555555578899999999999998887665555554444443
No 24
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=77.21 E-value=7.7 Score=40.65 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=68.7
Q ss_pred CcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhH
Q 009047 114 RNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLR 193 (545)
Q Consensus 114 r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe 193 (545)
..++|.+|......++++-++...+-=...+|+-|+.||.+++|..|+.. ..++.+.++ .+-+.=|+.||+.-+
T Consensus 147 d~del~~Lv~~va~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~f-i~~f~L~dk-----fpPv~lLk~yl~~~k 220 (290)
T PF07899_consen 147 DEDELLKLVVSVARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEAVRF-IYAFGLVDK-----FPPVPLLKSYLEDSK 220 (290)
T ss_pred CHHHHHHHHHHhcchHhhHHHHHHcCchhhhHHHHHHHHHCCCccchHHH-HHHHcCCCC-----CCCHHHHHHHHHHHH
Confidence 57899999999999999999988888888999999999999999999998 557777776 556667999999877
Q ss_pred HHHHHH
Q 009047 194 GVLFYK 199 (545)
Q Consensus 194 ~~L~d~ 199 (545)
++-..+
T Consensus 221 ~~~~~~ 226 (290)
T PF07899_consen 221 KAAKRI 226 (290)
T ss_pred HHHHHH
Confidence 776443
No 25
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=70.96 E-value=44 Score=38.97 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=63.2
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhh
Q 009047 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIA 142 (545)
Q Consensus 63 ~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~ 142 (545)
..|+..|-+-|.+.-.+--+...+.+.-..--+.|+.++.+.+.-...-...++.+.+++-..+.|. -+--+|..|.
T Consensus 38 EELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~svA~tp~raeqnp~~e~~Y---g~aaqVKyLv 114 (863)
T KOG2033|consen 38 EELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANSVAKTPGRAEQNPAGEHLY---GTAAQVKYLV 114 (863)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcchhhcCchhhHHH---HHHHHHHHHH
Confidence 3455555555555544444444443333333444444444444433333445666777664444333 3456889999
Q ss_pred ccHHHHHHHHhccCHHHHHHHHHHHH
Q 009047 143 KVPARIEKLIAGKQYYAAVQLHAQSA 168 (545)
Q Consensus 143 ~vP~kIe~lIseK~yl~Av~LL~~s~ 168 (545)
..|+.|=..+.+.+|++|+++..-+.
T Consensus 115 ~~PE~IWg~lD~s~fl~At~ly~~~~ 140 (863)
T KOG2033|consen 115 SSPELIWGHLDSSEFLDATVLYCMVE 140 (863)
T ss_pred hCHHHhhccccccchHHHHHHHHHHH
Confidence 99999999999999999999876544
No 26
>PF12854 PPR_1: PPR repeat
Probab=70.79 E-value=8.2 Score=27.01 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHHHHhhCChHHHHHHHHh
Q 009047 313 PLHVKYLQTMVECLCILGKVAAAGAIICQ 341 (545)
Q Consensus 313 ~~sf~Yi~~llesL~~LgKL~~Al~~i~q 341 (545)
|+.+.| .+||.++++-|+++.|.+++.+
T Consensus 5 Pd~~ty-~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTY-NTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHH-HHHHHHHHHCCCHHHHHHHHHh
Confidence 445555 7899999999999999998753
No 27
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=70.33 E-value=1.2e+02 Score=31.12 Aligned_cols=107 Identities=14% Similarity=0.219 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHhHhhhCCCCCCchhHHHhhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 009047 12 EKAYLREELARIEVSWVAPRFDSLPHVVHILTS--KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRL 89 (545)
Q Consensus 12 d~~~l~evL~~I~~eW~~~~fd~l~~vl~lLss--~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~ 89 (545)
++..+.++++.+..--..-+-+.+...+.-+.. .++.. .+.+..+.+. .+-+.++.....+...|.+...+.+.
T Consensus 128 ~~~~l~~ll~~~~~ll~~~~~~~l~~~l~~l~~~l~~~~~---~l~~~l~~l~-~l~~~l~~~~~~i~~ll~~l~~l~~~ 203 (291)
T TIGR00996 128 VPPEIDDLLGSLTRLLNGLDPEKLNAILNALAEALAGQGP---QLRNLLDGLA-QLTAALNARDGDIGALIDNLNRVLDV 203 (291)
T ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHH-HHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 455666666666654443222233333333321 12222 2333333333 23334556677888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Q 009047 90 FSESAESIKELKVDLAEAKRRLGTRNKQLHQLW 122 (545)
Q Consensus 90 I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~ 122 (545)
+.+.++.+..+-.++...-..|..++++|.++-
T Consensus 204 l~~~~~~l~~~v~~l~~~~~~l~~~~~~l~~~l 236 (291)
T TIGR00996 204 LADRSDQLDRLLDNLATLTAQLADRDDALDDAL 236 (291)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 888888888888888887777777676665543
No 28
>PRK10869 recombination and repair protein; Provisional
Probab=68.86 E-value=2.2e+02 Score=32.58 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=11.2
Q ss_pred HHHHHHHHHhHH----HHHHHHHHHHHH
Q 009047 183 QDVRSELTKLRG----VLFYKVLEDLHA 206 (545)
Q Consensus 183 ~dLR~~L~~qe~----~L~d~LiEELh~ 206 (545)
..+...|...++ .|...+..+|++
T Consensus 358 ~~~A~~LS~~R~~aA~~l~~~v~~~L~~ 385 (553)
T PRK10869 358 LETAQKLHQSRQRYAKELAQLITESMHE 385 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554444 344444555533
No 29
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=68.02 E-value=1.5e+02 Score=30.29 Aligned_cols=168 Identities=12% Similarity=0.124 Sum_probs=90.3
Q ss_pred HHHHHHHhHhhhCC--CCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009047 16 LREELARIEVSWVA--PRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES 93 (545)
Q Consensus 16 l~evL~~I~~eW~~--~~fd~l~~vl~lLss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~S 93 (545)
+..-+.....+|.. ..+++...-+..+ +.++..|....+.+......+...--+-.+.+-.++..........
T Consensus 22 l~~~~e~~~~~L~~~~~~~~~~~~~~~~~-----e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i 96 (264)
T PF06008_consen 22 LLSSIEDLTNQLRSYRSKLNPQKQQLDPL-----EKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFI 96 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455553 2334333333333 4445555555566666666555555555555555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHh----ccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHH
Q 009047 94 AESIKELKVDLAEAKRRL----GTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSAL 169 (545)
Q Consensus 94 q~~i~~lK~~L~~ak~~L----~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ 169 (545)
+.-...|+.-+..+...= .....+|.+ .++++-.+|..|..-. -.-....++...-+|..||.+...
T Consensus 97 ~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~------~l~ea~~mL~emr~r~---f~~~~~~Ae~El~~A~~LL~~v~~ 167 (264)
T PF06008_consen 97 QNLQDNIQELIEQVESLNENGDQLPSEDLQR------ALAEAQRMLEEMRKRD---FTPQRQNAEDELKEAEDLLSRVQK 167 (264)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCCHHHHHH------HHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443221 123333333 2344445555554442 344456677788899999888888
Q ss_pred HHcccCCCCcCcc-HHHHHHHHHhHHHHHH
Q 009047 170 MLEREGLQTVGAL-QDVRSELTKLRGVLFY 198 (545)
Q Consensus 170 ll~~~eL~~I~AL-~dLR~~L~~qe~~L~d 198 (545)
.+.+ ....-.+| ..++..|......|.|
T Consensus 168 ~~~~-~~~~~~~l~~~i~~~L~~~~~kL~D 196 (264)
T PF06008_consen 168 WFQK-PQQENESLAEAIRDDLNDYNAKLQD 196 (264)
T ss_pred HHhh-HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 8766 34444455 6788888877777654
No 30
>PTZ00464 SNF-7-like protein; Provisional
Probab=67.04 E-value=1.3e+02 Score=30.11 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=54.0
Q ss_pred HHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 009047 129 RHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (545)
Q Consensus 129 ~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~l 208 (545)
+.+-++..+...|.++-..|+..-.+.....|...-..+++.+++ .+ +|.-+.+|..++..+-.. .+|+++.|
T Consensus 75 ~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k-~i-~id~Vd~l~Dei~E~~e~-----~~EI~e~L 147 (211)
T PTZ00464 75 NQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFK-KL-NVDKVEDLQDELADLYED-----TQEIQEIM 147 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 334455556666777777888888888889999998999999988 66 888888888888765443 45555555
No 31
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.02 E-value=3.1e+02 Score=32.32 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=97.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcH
Q 009047 44 SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQ-------NYSQILRLFSESAESIKELKVDLAEAKRRLGTRNK 116 (545)
Q Consensus 44 s~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~-------sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~ 116 (545)
+...+...++|-+....++..|..-|-..|.+.-..-. .-..+...+++-|..|+.||..+.+-.+.+..+.-
T Consensus 70 s~~ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd~~epyk~i~~kt~ 149 (797)
T KOG2211|consen 70 SNRIATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKNDNKEPYKIIWLKTM 149 (797)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33445556666666667777777777655555433322 23455667777788888888888888888888888
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHh--ccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHH
Q 009047 117 QLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIA--GKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELT 190 (545)
Q Consensus 117 eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIs--eK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~ 190 (545)
.|.+|....-..++...+|+-=..|+ .+.+ .++...|.+.+.+=-.+++..+|.+|.-+..=+.++.
T Consensus 150 vl~rLhva~~lLrrsgr~l~LskkL~-------~l~~~~~~d~traaq~lneLd~l~e~~dlsgIdvId~el~fv~ 218 (797)
T KOG2211|consen 150 VLTRLHVAENLLRRSGRALELSKKLA-------SLNSSMVVDATRAAQTLNELDSLLEVLDLSGIDVIDKELMFVS 218 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhccCCHhHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 88888888888888777776555555 2221 2246778888888888999999999988877666654
No 32
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.90 E-value=1.1e+02 Score=35.33 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=18.5
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHhHhcCC
Q 009047 182 LQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (545)
Q Consensus 182 L~dLR~~L~~qe~~L~d~LiEELh~~lYlK~ 212 (545)
|..++.++......-...-+.+.-+.++.|.
T Consensus 492 l~~~~~~l~~~~~~~le~~~~~~f~~l~~k~ 522 (650)
T TIGR03185 492 LKEFREKLLERKLQQLEEEITKSFKKLMRKH 522 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567777776655444455555556666664
No 33
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.73 E-value=2.7e+02 Score=31.11 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009047 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESI 97 (545)
Q Consensus 48 E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i 97 (545)
...+.+|+++...+.+.+.. +-.++..++..++.|+.+...++......
T Consensus 280 ~~~i~~l~~~l~~l~~~~~~-~~~~~~~l~~~~~~~g~~~~~l~~~~~~~ 328 (503)
T KOG2273|consen 280 KEKIDKLEQQLKKLSKQVQR-LVKRRRELASNLAELGKALAQLSALEGET 328 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 45556677777777777777 77788999999999999999999888854
No 34
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=61.53 E-value=87 Score=36.56 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009047 59 DIIEEVVDEVVHAYHTGFNKAI-QNYSQILRLFSESAESIKELKVDLAEA 107 (545)
Q Consensus 59 ~~l~~~L~~vV~eh~q~FN~sI-~sy~~I~~~I~~Sq~~i~~lK~~L~~a 107 (545)
..++..+..+++++.++-.... ..+..+.-.+.+|++.|..+++++...
T Consensus 187 ~al~~e~~~~~~~~~~~~~~~~~~d~~~l~vll~qCr~~v~~v~~~~~~~ 236 (643)
T PF10136_consen 187 VALQREVEAFLEAYRQQDEDPDSEDLKHLRVLLDQCREQVDRVRKHLEKY 236 (643)
T ss_pred HHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4456777777776666554211 177788888888888888888888776
No 35
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=60.80 E-value=1.9e+02 Score=29.18 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhH
Q 009047 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (545)
Q Consensus 48 E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~ 127 (545)
..++..+....+.+...+++++.. +++............+...+.++..+|..+...+..+...+..+.++-..-..
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~~---~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILES---DSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555542 22226667778888888889999999999988888888888888777766666
Q ss_pred HHHHHH
Q 009047 128 LRHIIS 133 (545)
Q Consensus 128 ~~~mL~ 133 (545)
.+..+.
T Consensus 103 ~~~~l~ 108 (302)
T PF10186_consen 103 RRSRLS 108 (302)
T ss_pred HHHHHH
Confidence 665555
No 36
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.73 E-value=2e+02 Score=30.35 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=35.8
Q ss_pred cCcHHHHHHHHHhhHHHHHHH----HHHhH-HHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHH
Q 009047 113 TRNKQLHQLWYRSVTLRHIIS----LLDQI-EGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRS 187 (545)
Q Consensus 113 ~r~~eL~~L~~~s~~~~~mL~----iLd~I-e~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~ 187 (545)
|...+|..+-.+=..++.-|. .|.+. +++..+-.+|+.+-.++.= ...-|.++-+..+.-.-|+..-+..|+.
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~--l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~ 283 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQE--LLAEIAEAEKIREECRGWTRSEVKRLKA 283 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 444444444444444444333 22221 2333344444444333322 2222344444555445566666667776
Q ss_pred HHHHhHH
Q 009047 188 ELTKLRG 194 (545)
Q Consensus 188 ~L~~qe~ 194 (545)
.+...++
T Consensus 284 ~~~~Le~ 290 (325)
T PF08317_consen 284 KVDALEK 290 (325)
T ss_pred HHHHHHH
Confidence 6655443
No 37
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.24 E-value=2.3e+02 Score=29.00 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhccCcHHHHHHHH
Q 009047 61 IEEVVDEVVHAYHTGFNKA----IQNYSQILRLFSESAESIKELKVDL-------------AEAKRRLGTRNKQLHQLWY 123 (545)
Q Consensus 61 l~~~L~~vV~eh~q~FN~s----I~sy~~I~~~I~~Sq~~i~~lK~~L-------------~~ak~~L~~r~~eL~~L~~ 123 (545)
+..+|..+..+|...|... -..|+..+..+++++++|...|... ..-...+..-...-++|..
T Consensus 79 l~~aLs~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~ 158 (242)
T cd07600 79 LNHALSRAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVED 158 (242)
T ss_pred HHHHHHHHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHhH---HHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHH--HHHH
Q 009047 124 RSVTLRHIISLLDQI---EGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG--VLFY 198 (545)
Q Consensus 124 ~s~~~~~mL~iLd~I---e~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~--~L~d 198 (545)
++..|+-+-.-+... +.--.....+| -++.+|..|.+.-...+.-+ +.+..-++.|+.-+..|-. .-.-
T Consensus 159 ~RLd~D~~K~~~~ka~~~~k~~~~~~e~E--~aEdef~~a~E~a~~~M~~i----l~~~e~i~~L~~fv~AQl~Yh~~~~ 232 (242)
T cd07600 159 KRLQLDTARAELKSAEPAEKQEAARVEVE--TAEDEFVSATEEAVELMKEV----LDNPEPLQLLKELVKAQLAYHKTAA 232 (242)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHHH--HHHHHHHHhHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhH
Q 009047 199 KVLEDLHAHL 208 (545)
Q Consensus 199 ~LiEELh~~l 208 (545)
.++++|...+
T Consensus 233 e~L~~l~~~~ 242 (242)
T cd07600 233 ELLEELLSVL 242 (242)
T ss_pred HHHHHHhhcC
No 38
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=56.96 E-value=85 Score=30.96 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHhH
Q 009047 1 MDIFDGLPISPEKAYLREELARIE 24 (545)
Q Consensus 1 ~~~~~~~p~p~d~~~l~evL~~I~ 24 (545)
|.+|-+.||.||...|.+--..+.
T Consensus 18 mevfk~vPQ~PHF~pL~~~~e~~R 41 (190)
T PF05266_consen 18 MEVFKKVPQSPHFSPLQEFKEELR 41 (190)
T ss_pred HHHHHcCCCCCCChhhhcCcHHhh
Confidence 456888999999998875544443
No 39
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=56.17 E-value=5.1e+02 Score=32.64 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=53.3
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHH
Q 009047 64 VVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLR 129 (545)
Q Consensus 64 ~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~ 129 (545)
.+.+.+.+-.++.+.+=.....+...|..+|+.+.++++..+.|...+......|.+||.+-.+++
T Consensus 1567 ~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1567 DVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566677777777788888889999999999999999999999999999999998766544
No 40
>PRK14140 heat shock protein GrpE; Provisional
Probab=56.16 E-value=49 Score=32.74 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHH-HHcccCCCCcCcc
Q 009047 126 VTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSAL-MLEREGLQTVGAL 182 (545)
Q Consensus 126 ~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~-ll~~~eL~~I~AL 182 (545)
.-.+.+|.++|.++...+....-+. -+.|...++++...+. ++.++++..|+++
T Consensus 88 ~~~~~LLpvlDnLerAl~~~~~~~~---~~~i~~Gv~mi~k~l~~~L~k~GV~~i~~~ 142 (191)
T PRK14140 88 SLASDLLPALDNFERALQIEADDEQ---TKSLLKGVEMVHRQLLEALKKEGVEVIEAV 142 (191)
T ss_pred HHHHHHHHHHHHHHHHHhccCccch---HHHHHHHHHHHHHHHHHHHHHCCCEeeCCC
Confidence 3456677777777665443221111 1345555555555544 5555555555444
No 41
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=56.07 E-value=2.3e+02 Score=28.70 Aligned_cols=108 Identities=15% Similarity=0.234 Sum_probs=86.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcHHHHHHH
Q 009047 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNY-SQILRLFSESAESIKELKVDLAEAKRRLGT-RNKQLHQLW 122 (545)
Q Consensus 45 ~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy-~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~-r~~eL~~L~ 122 (545)
++....+..+-+....+.......+..=.+.|...+.++ ..-+..|+..+.++..-|=.+-.||..+.. .+.+++.-.
T Consensus 84 S~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~~~eE~~~A~ 163 (223)
T cd07615 84 STFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQGKIPDEEIRQAV 163 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 356778888888889999999999999999999999999 577889999999999999999999999976 467777666
Q ss_pred HHhhH-----HHHHHHHHHh-HHHhhccHHHHHHHH
Q 009047 123 YRSVT-----LRHIISLLDQ-IEGIAKVPARIEKLI 152 (545)
Q Consensus 123 ~~s~~-----~~~mL~iLd~-Ie~L~~vP~kIe~lI 152 (545)
.+-.+ ...|..+|+. ++.++++-.-|++-+
T Consensus 164 ~kfees~E~a~~~M~n~le~e~e~~~~L~~lv~AQl 199 (223)
T cd07615 164 EKFEESKELAERSMFNFLENDVEQVSQLSVLIEAAL 199 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 55554 4557777777 777776666666555
No 42
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.76 E-value=1.4e+02 Score=34.96 Aligned_cols=154 Identities=14% Similarity=0.183 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHh-------hHHHHH
Q 009047 59 DIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS-------VTLRHI 131 (545)
Q Consensus 59 ~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s-------~~~~~m 131 (545)
..+...|+.+=-.+-|..-.|=.....+++.|..+-..|..+-+.|..+...|+.-|+.+...-.+. ..-..+
T Consensus 196 E~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~Nn~kL 275 (867)
T KOG2148|consen 196 ERLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNVNNKKL 275 (867)
T ss_pred HHHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccchHHH
Confidence 3445555555556666666666777788888888888888888888888888877776665443322 223333
Q ss_pred HHHHHh-HHHhhccHHHHHHHHhccCHHHHH---HHHH---HHHHHHccc----CCCCcCccHHHHHHHHHhHHHHHHHH
Q 009047 132 ISLLDQ-IEGIAKVPARIEKLIAGKQYYAAV---QLHA---QSALMLERE----GLQTVGALQDVRSELTKLRGVLFYKV 200 (545)
Q Consensus 132 L~iLd~-Ie~L~~vP~kIe~lIseK~yl~Av---~LL~---~s~~ll~~~----eL~~I~AL~dLR~~L~~qe~~L~d~L 200 (545)
++-|+. |+.|. +|..=-+-+.+.+|..|- +-+. +|+.-+-.+ .+..+.|.++=|++|+..+.++-+.+
T Consensus 276 ~eEl~kvin~L~-vp~shi~aL~egdf~~a~~~ieact~aA~al~q~~~~~ldp~~l~m~Avkdqr~eleklk~~Fvrrl 354 (867)
T KOG2148|consen 276 IEELDKVINRLD-VPSSHIAALTEGDFDEADQGIEACTWAAKALRQLMNPNLDPIYLNMRAVKDQRAELEKLKATFVRRL 354 (867)
T ss_pred HHHHHHHHHhcc-CcHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333 55555 888888888888887663 2222 233322233 34467899999999999998888888
Q ss_pred HHHHHHhHhcCCC
Q 009047 201 LEDLHAHLYNRGE 213 (545)
Q Consensus 201 iEELh~~lYlK~~ 213 (545)
.+=|.+..-.-+.
T Consensus 355 ssfLnnlF~~l~d 367 (867)
T KOG2148|consen 355 SSFLNNLFASLGD 367 (867)
T ss_pred HHHHHHHHHHhcc
Confidence 7777555443343
No 43
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=53.71 E-value=2.6e+02 Score=28.50 Aligned_cols=140 Identities=13% Similarity=0.116 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HH--------H----hccCcHHHHHHHHHhhHH
Q 009047 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEA-KR--------R----LGTRNKQLHQLWYRSVTL 128 (545)
Q Consensus 62 ~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~a-k~--------~----L~~r~~eL~~L~~~s~~~ 128 (545)
...|....-+|-.+|-.. ..|+..+..+++++.+|..+|..+... +. . |..-....++|-.++..|
T Consensus 71 ~~~Lg~~M~~~g~~~g~~-S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdy 149 (229)
T cd07616 71 PELLGQYMIDAGNEFGPG-TAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDL 149 (229)
T ss_pred HHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555432 335555555555555555555554433 11 1 111123445555555566
Q ss_pred HHHHHHHHh--HHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHH--HHHHHHHHHH
Q 009047 129 RHIISLLDQ--IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG--VLFYKVLEDL 204 (545)
Q Consensus 129 ~~mL~iLd~--Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~--~L~d~LiEEL 204 (545)
+.....+.. -++-+.++ .-+-..++-+|.++.+.....+.-+..- ++.-++.|+.-++.|-. .-...++++|
T Consensus 150 D~~K~r~~kAk~~~~~~~~-e~elr~ae~efees~E~a~~~m~~i~~~---~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L 225 (229)
T cd07616 150 DAAKTRLKKAKVAEARAAA-EQELRITQSEFDRQAEITRLLLEGISST---HAHHLRCLNDFVEAQMTYYAQCYQYMLDL 225 (229)
T ss_pred HHHHHHHhcCCcchhhcch-HHHHHHHHHHHHHHHHHHHHHHHhhhhc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555532 22222222 3333447777888888877666544321 34445555555554432 3333445555
Q ss_pred HH
Q 009047 205 HA 206 (545)
Q Consensus 205 h~ 206 (545)
+.
T Consensus 226 ~~ 227 (229)
T cd07616 226 QK 227 (229)
T ss_pred Hh
Confidence 54
No 44
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=53.60 E-value=2.6e+02 Score=28.50 Aligned_cols=122 Identities=11% Similarity=0.152 Sum_probs=90.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHh
Q 009047 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (545)
Q Consensus 46 ~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s 125 (545)
.+...+..|-+....+...++.....-.-.|--.|.-|-.++.+|..+-..=..+-.....|...|..++..+.+|-...
T Consensus 77 ~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~ 156 (234)
T cd07665 77 ALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWAN 156 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45667777777778888888888888888999999999999999999999999999999999999999998888883322
Q ss_pred hHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcc
Q 009047 126 VTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (545)
Q Consensus 126 ~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~ 173 (545)
.-.++-+.-.+|.++ ..+++. .+++|-...+++..=+...+.
T Consensus 157 -~~dK~~~a~~Ev~e~---e~k~~~--a~~~fe~is~~ik~El~rFe~ 198 (234)
T cd07665 157 -KPDKLQQAKDEIAEW---ESRVTQ--YERDFERISATVRKEVIRFEK 198 (234)
T ss_pred -CchHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 234444444444443 333332 344787777777766665554
No 45
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=51.36 E-value=2e+02 Score=29.11 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhccCcHHHHHHHHHhhHH
Q 009047 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAE-------------AKRRLGTRNKQLHQLWYRSVTL 128 (545)
Q Consensus 62 ~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~-------------ak~~L~~r~~eL~~L~~~s~~~ 128 (545)
...|..+..+|...|...= .|+..+..+++++.+|..+|..+.. ....+..-...-++|..++..|
T Consensus 66 ~~~Lg~~M~~~g~elg~~S-~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdy 144 (223)
T cd07592 66 EGLLGEVMLKYGRELGEDS-NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDY 144 (223)
T ss_pred ccHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHH---HHHHHHhHHHHHHHHHHHHH
Q 009047 129 RHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDV---RSELTKLRGVLFYKVLEDLH 205 (545)
Q Consensus 129 ~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dL---R~~L~~qe~~L~d~LiEELh 205 (545)
+..-..+... ..-|--.++.+|..+.+.....+.-+-..+-..|..|..+ ....-.+-..+...|..+|.
T Consensus 145 D~~k~k~~k~-------~eeEl~~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 145 DYKKRKQGKG-------PDEELKQAEEKFEESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred HHHHHhcccC-------chHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhH
Q 009047 206 AHL 208 (545)
Q Consensus 206 ~~l 208 (545)
..+
T Consensus 218 ~~~ 220 (223)
T cd07592 218 ERI 220 (223)
T ss_pred HHh
No 46
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=51.13 E-value=2.8e+02 Score=28.13 Aligned_cols=134 Identities=16% Similarity=0.237 Sum_probs=90.5
Q ss_pred HHHHHHHhHhhhCCCCCCchhHHHhhc------------CCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH
Q 009047 16 LREELARIEVSWVAPRFDSLPHVVHIL------------TSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNY 83 (545)
Q Consensus 16 l~evL~~I~~eW~~~~fd~l~~vl~lL------------ss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy 83 (545)
+-+-++.|+-.++.+. -|....+| ..++....+..+-+....+...-...+..=.+.|+..+.++
T Consensus 46 ~~~~~~k~rg~~k~~~---~p~~~~~Lg~~M~~~G~~lg~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~ 122 (223)
T cd07614 46 MLNTVSKIRGQVKNPG---YPQSEGLLGETMIRYGKELGDESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNL 122 (223)
T ss_pred HHHHHHHHhccccCCC---CCChHhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777532 22222332 12356777778888888888888888888889999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHhhH-----HHHHHHHHHh-HHHhhccHHHHHHHH
Q 009047 84 S-QILRLFSESAESIKELKVDLAEAKRRLGTRN-KQLHQLWYRSVT-----LRHIISLLDQ-IEGIAKVPARIEKLI 152 (545)
Q Consensus 84 ~-~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~-~eL~~L~~~s~~-----~~~mL~iLd~-Ie~L~~vP~kIe~lI 152 (545)
. .-+..++..+.++..-|=.+-.||..+..+. ++|+.-..+-.+ ...|..+++. ++.++++-+-|++-+
T Consensus 123 le~dik~i~k~RKkLe~rRLdyD~~K~r~~k~~eeelr~a~ekFees~E~a~~~M~~il~~e~e~~~~L~~lveAQl 199 (223)
T cd07614 123 CDKDLKEIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAMEKFEESKEVAETSMHNLLETDIEQVSQLSALVDAQL 199 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 6 7788999999999999999999999987643 456554443332 2335555555 555555554444444
No 47
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=50.85 E-value=2.7e+02 Score=29.41 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHH
Q 009047 85 QILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL 135 (545)
Q Consensus 85 ~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iL 135 (545)
..+-.+.+++..|++||+-+...|..|..+...+++.+.+--.+++-|+.|
T Consensus 114 EAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsL 164 (305)
T PF15290_consen 114 EAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESL 164 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHH
Confidence 456779999999999999999999999999999998887655554444433
No 48
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=50.30 E-value=1.4e+02 Score=30.80 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHh-HHH
Q 009047 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQ-IEG 140 (545)
Q Consensus 62 ~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~-Ie~ 140 (545)
-+.|+++|+.++-.|...=.-|++-...|+.... .|-...+.+..||.+-.+.+.+-..||+ ++.
T Consensus 73 ~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr--------------~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~ 138 (254)
T KOG2196|consen 73 YKTLEELINKWSLELEEQERVFLQQATQVNAWDR--------------TLIENGEKISGLYNEVVKVKLDQKRLDQELEF 138 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------HHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4789999999999999999999998888877754 3455678888999998888888888876 777
Q ss_pred hhccHHHHHHHHh
Q 009047 141 IAKVPARIEKLIA 153 (545)
Q Consensus 141 L~~vP~kIe~lIs 153 (545)
|.+....||.++.
T Consensus 139 I~sqQ~ELE~~L~ 151 (254)
T KOG2196|consen 139 ILSQQQELEDLLD 151 (254)
T ss_pred HHHHHHHHHHHHH
Confidence 7788888887764
No 49
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.80 E-value=1.7e+02 Score=35.27 Aligned_cols=170 Identities=14% Similarity=0.190 Sum_probs=99.2
Q ss_pred hCCCCCCchhHHHhhcC---CCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHH
Q 009047 27 WVAPRFDSLPHVVHILT---SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIK-ELKV 102 (545)
Q Consensus 27 W~~~~fd~l~~vl~lLs---s~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~-~lK~ 102 (545)
...+.|+|-.+.++.=. -.+++....-++...+.=...=..+|..+...|-.+..+-..|-..+..--+... .+=.
T Consensus 166 l~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~ 245 (934)
T KOG2347|consen 166 LRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTT 245 (934)
T ss_pred cccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHH
Confidence 34478999999888742 2244444444444443333334456677766666666666665555555111111 1222
Q ss_pred HHHHHHHHhccCcHHH-HHHHHHhhH---HHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCC
Q 009047 103 DLAEAKRRLGTRNKQL-HQLWYRSVT---LRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQT 178 (545)
Q Consensus 103 ~L~~ak~~L~~r~~eL-~~L~~~s~~---~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~ 178 (545)
+|..|-+....+.+-+ ..+..|.-+ -+-++-+|.-...|-..|..|+.-|.+++|.-++.=..++..+.-+
T Consensus 246 ~l~n~i~~~~s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~~----- 320 (934)
T KOG2347|consen 246 KLENCIKNSTSRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFGK----- 320 (934)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhcc-----
Confidence 2555555555444332 333333322 3367777888888889999999999999998888776666555444
Q ss_pred cCccHHHHHHHHH-------hHHHHHHHHHH
Q 009047 179 VGALQDVRSELTK-------LRGVLFYKVLE 202 (545)
Q Consensus 179 I~AL~dLR~~L~~-------qe~~L~d~LiE 202 (545)
.-+.-+|.+|++ .+..|++.|++
T Consensus 321 -t~v~~Fkk~l~Eve~~m~~~k~~l~~kli~ 350 (934)
T KOG2347|consen 321 -TEVNLFKKVLEEVEKRMQSFKETLYRKLID 350 (934)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455555554 34455555543
No 50
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=48.31 E-value=4e+02 Score=29.10 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=26.8
Q ss_pred HHHhhccHHHHHHHHhccCHHHHHHHHHHHHHH
Q 009047 138 IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALM 170 (545)
Q Consensus 138 Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~l 170 (545)
++.+.++=..|+.++.+..|-.+.+-+++++.-
T Consensus 336 ~~ni~~vs~dv~~ft~D~~~r~~Lr~li~~Ls~ 368 (370)
T PLN03094 336 LKHIESISSDISGFTGDEATRRNLKQLIQSLSR 368 (370)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 455667788999999999999999888887753
No 51
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=47.44 E-value=2.5e+02 Score=30.78 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 009047 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNY--SQILRLFSESAESIKELKVDLAEA 107 (545)
Q Consensus 48 E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy--~~I~~~I~~Sq~~i~~lK~~L~~a 107 (545)
....++|++....+...++..+..+.+.+..--..+ ..-...+...++++..+.+.|..+
T Consensus 263 ~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~~a 324 (438)
T PRK00286 263 AELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRA 324 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777888888887777777655554 223444556666666666666554
No 52
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=46.92 E-value=3.4e+02 Score=27.93 Aligned_cols=89 Identities=13% Similarity=0.229 Sum_probs=63.0
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHH
Q 009047 69 VHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARI 148 (545)
Q Consensus 69 V~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kI 148 (545)
++.+-..+...|.....+...+.++...+..+=.++...-.-|..++.+|..+.......-....
T Consensus 47 ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~~~~a~~~~--------------- 111 (267)
T PF11887_consen 47 LNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSATGLADTGT--------------- 111 (267)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---------------
Confidence 45566777788888888888888888888888888888888888888888887776655433222
Q ss_pred HHHHh--ccCHHHHHHHHHHHHHHHcc
Q 009047 149 EKLIA--GKQYYAAVQLHAQSALMLER 173 (545)
Q Consensus 149 e~lIs--eK~yl~Av~LL~~s~~ll~~ 173 (545)
.++. ..++..+++.|.....++.+
T Consensus 112 -~~l~~n~~~L~~~~~~L~p~~~lL~~ 137 (267)
T PF11887_consen 112 -DFLADNRDNLIRALDDLRPTTDLLAK 137 (267)
T ss_pred -HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 2221 23456677777777777766
No 53
>PRK14160 heat shock protein GrpE; Provisional
Probab=46.23 E-value=1.6e+02 Score=29.68 Aligned_cols=49 Identities=18% Similarity=0.424 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHH-HHcccCCCCcCc
Q 009047 127 TLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSAL-MLEREGLQTVGA 181 (545)
Q Consensus 127 ~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~-ll~~~eL~~I~A 181 (545)
-.+.+|.++|.++......... +.|...++++...+. .+.+.++..|++
T Consensus 113 ~~~~LLpVlDnLerAl~~~~~~------~~l~~Gv~mi~kql~~vL~k~GVe~I~~ 162 (211)
T PRK14160 113 VLKELLPVLDNLERAAAVEGSV------EDLKKGIEMTVKQFKTSLEKLGVEEIST 162 (211)
T ss_pred HHHHHhhHHhHHHHHHhcccch------hHHHHHHHHHHHHHHHHHHHCCCEEeCC
Confidence 4566777777777655442211 235556665555444 555555555554
No 54
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=45.65 E-value=3e+02 Score=26.90 Aligned_cols=96 Identities=14% Similarity=0.214 Sum_probs=75.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHh
Q 009047 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (545)
Q Consensus 46 ~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s 125 (545)
+....+..|-+....+...+..........|...|.-|.....++.++-.+=..+-..+..+...|..++..+.++-...
T Consensus 79 ~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~ 158 (236)
T PF09325_consen 79 SLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASG 158 (236)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 45667777878888888888888888999999999999999999999988888888899999999999888888887763
Q ss_pred h-HHHHHHHHHHhHHHh
Q 009047 126 V-TLRHIISLLDQIEGI 141 (545)
Q Consensus 126 ~-~~~~mL~iLd~Ie~L 141 (545)
. ..+++-+...+|+++
T Consensus 159 ~~~~~k~~~~~~ei~~~ 175 (236)
T PF09325_consen 159 KNRQDKVEQAENEIEEA 175 (236)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 3 334444444444433
No 55
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.66 E-value=2.9e+02 Score=26.41 Aligned_cols=9 Identities=33% Similarity=0.283 Sum_probs=3.3
Q ss_pred cHHHHHHHH
Q 009047 115 NKQLHQLWY 123 (545)
Q Consensus 115 ~~eL~~L~~ 123 (545)
+..+.+++.
T Consensus 164 ~~~~~~~~~ 172 (191)
T PF04156_consen 164 RSQLERLQE 172 (191)
T ss_pred HHHHHHHHH
Confidence 333333333
No 56
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=44.13 E-value=3.6e+02 Score=27.39 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=88.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcHHHHHHH
Q 009047 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-QILRLFSESAESIKELKVDLAEAKRRLGT-RNKQLHQLW 122 (545)
Q Consensus 45 ~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~-~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~-r~~eL~~L~ 122 (545)
++....+..+-+....+...-...+..=.+.|...+.+|. .-+..|+..+.++..-|=.+-.||..+.. .+++|+.-.
T Consensus 84 S~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~~eeElr~A~ 163 (223)
T cd07613 84 CNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAL 163 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCCCcHHHHHHHH
Confidence 3567777788888888888888888888899999999976 56678899999999999999999999875 477787775
Q ss_pred HHhhHH-----HHHHHHHHh-HHHhhccHHHHHHHHhccCHHHHHHHHHH
Q 009047 123 YRSVTL-----RHIISLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHAQ 166 (545)
Q Consensus 123 ~~s~~~-----~~mL~iLd~-Ie~L~~vP~kIe~lIseK~yl~Av~LL~~ 166 (545)
.+-.+- ..|..+|+. ++.++++-+-|++-+. -|-.|.++|.+
T Consensus 164 ~kFees~E~a~~~M~n~l~~e~e~~~~L~~fveAQl~--Yh~qa~eiL~~ 211 (223)
T cd07613 164 EKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLE--YHKQATQILQQ 211 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 555543 345557777 7777766666665553 23444444433
No 57
>KOG2216 consensus Conserved coiled/coiled coil protein [Function unknown]
Probab=42.81 E-value=3.2e+02 Score=28.82 Aligned_cols=138 Identities=20% Similarity=0.238 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhh
Q 009047 52 QILKDQNDIIEEVVDEVVHAYHTGF-----NKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV 126 (545)
Q Consensus 52 ~~Le~~~~~l~~~L~~vV~eh~q~F-----N~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~ 126 (545)
.-++.+++.+++++.++-+...++= -..|-.|-.....-..+..+...+|...+.+|..+...+-+|..|-.+-+
T Consensus 14 ~il~t~f~qlqk~ia~ikeak~rg~~~e~~~q~~~~fv~Lr~aNR~~~~q~~~~r~~t~e~k~~vD~~~LQLqnl~yev~ 93 (303)
T KOG2216|consen 14 TILNTQFDQLQKAIAGIKEAKSRGPIEENRIQTMSKFVLLRHANRLLHAQLKKARKETEEAKNKVDAKHLQLQNLLYEVQ 93 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCHhhhhHHHHHHHHH
Confidence 3455566666666666655555444 33444444444555566678889999999999999999999999999999
Q ss_pred HHHHHHH-------------HHHhHHHhhccHHHHHH--HHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHH
Q 009047 127 TLRHIIS-------------LLDQIEGIAKVPARIEK--LIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTK 191 (545)
Q Consensus 127 ~~~~mL~-------------iLd~Ie~L~~vP~kIe~--lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~ 191 (545)
.++..|. +...+|..+..|+-+.. .-++..+ ..-...++- +|..=..|...+++|..
T Consensus 94 HlkkeI~~c~~fks~~~el~Lvs~eEf~kEaP~i~a~ae~sssn~H-------~q~larL~~-ElkQRk~L~~~~~eLl~ 165 (303)
T KOG2216|consen 94 HLKKEIKRCLDFKSKYTELELVSEEEFNKEAPEIIADAEESSSNPH-------KQMLARLDF-ELKQRKELSKLYQELLS 165 (303)
T ss_pred HHHHHHHHHHHhhccCcccccccHHHHhhhCCcchhhhHhhcCCcH-------HHHHHHhHH-HHHHHHHHHHHHHHHHH
Confidence 8877664 34456666777766554 3333333 112222222 55566778889999999
Q ss_pred hHHHHH
Q 009047 192 LRGVLF 197 (545)
Q Consensus 192 qe~~L~ 197 (545)
++..|-
T Consensus 166 ~K~~Ll 171 (303)
T KOG2216|consen 166 RKAALL 171 (303)
T ss_pred HHHHHH
Confidence 988873
No 58
>PHA02562 46 endonuclease subunit; Provisional
Probab=41.96 E-value=3.7e+02 Score=30.00 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=6.0
Q ss_pred cHHHHHHHHHhHHHH
Q 009047 182 LQDVRSELTKLRGVL 196 (545)
Q Consensus 182 L~dLR~~L~~qe~~L 196 (545)
|.+.+.+|+.+.+.|
T Consensus 304 l~d~i~~l~~~l~~l 318 (562)
T PHA02562 304 IKDKLKELQHSLEKL 318 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444333333
No 59
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.90 E-value=2.4e+02 Score=25.56 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHH-----HHh-----HHHhhccHHHH
Q 009047 82 NYSQILRLFSESAESIKELK---VDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISL-----LDQ-----IEGIAKVPARI 148 (545)
Q Consensus 82 sy~~I~~~I~~Sq~~i~~lK---~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~i-----Ld~-----Ie~L~~vP~kI 148 (545)
.|++++.-..++|.+++.+- ..+.-++...+-...++..+-.+...|..|-.. +.. -+++++..++|
T Consensus 4 af~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~I 83 (114)
T KOG3501|consen 4 AFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKI 83 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHH
Confidence 47778888888888887655 344555666566666666666666666554433 222 34566777777
Q ss_pred HHHHhccCHHH
Q 009047 149 EKLIAGKQYYA 159 (545)
Q Consensus 149 e~lIseK~yl~ 159 (545)
+++=.+|.|++
T Consensus 84 eaLqkkK~YlE 94 (114)
T KOG3501|consen 84 EALQKKKTYLE 94 (114)
T ss_pred HHHHHHHHHHH
Confidence 77777777754
No 60
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=41.10 E-value=2.7e+02 Score=25.86 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=57.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH
Q 009047 46 DREGEVQILKDQNDIIEEVVDEVVHAYHT---GFNKAI----QNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL 118 (545)
Q Consensus 46 ~~E~~~~~Le~~~~~l~~~L~~vV~eh~q---~FN~sI----~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL 118 (545)
+.+..+..|+++..+.+..+.+.-..|.. .....| ..|.+.+..++.....+..-++++...|..|..-+..|
T Consensus 23 pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L 102 (142)
T PF04048_consen 23 PVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLL 102 (142)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999998887777777666655532 222223 45666777788888888888888888888887766665
Q ss_pred HHHHHHhhHHHHHHH
Q 009047 119 HQLWYRSVTLRHIIS 133 (545)
Q Consensus 119 ~~L~~~s~~~~~mL~ 133 (545)
..++-+++++..
T Consensus 103 ---~~~~~eL~~L~~ 114 (142)
T PF04048_consen 103 ---GCRREELKELWQ 114 (142)
T ss_pred ---hcCCHHHHHHHH
Confidence 334444444443
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=39.04 E-value=1.7e+02 Score=32.73 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=3.1
Q ss_pred CCCCCC
Q 009047 5 DGLPIS 10 (545)
Q Consensus 5 ~~~p~p 10 (545)
||.|.+
T Consensus 102 ~~~~~~ 107 (562)
T PHA02562 102 NGKLLD 107 (562)
T ss_pred CCEEEe
Confidence 555543
No 62
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=38.75 E-value=6.4e+02 Score=28.70 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHH
Q 009047 88 RLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHI 131 (545)
Q Consensus 88 ~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~m 131 (545)
..+.++...+..+...|..-...+...-..|.++-.+-..++.+
T Consensus 273 ~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~L 316 (563)
T TIGR00634 273 EQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRL 316 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444454444444444433
No 63
>PRK14162 heat shock protein GrpE; Provisional
Probab=38.51 E-value=1.5e+02 Score=29.53 Aligned_cols=53 Identities=23% Similarity=0.301 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHH-HHcccCCCCcCcc
Q 009047 127 TLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSAL-MLEREGLQTVGAL 182 (545)
Q Consensus 127 ~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~-ll~~~eL~~I~AL 182 (545)
-.+.+|.++|.++...+....-+. .+.|...++++.+.+. .+.+.++..|+++
T Consensus 91 ~~~~LLpV~DnLerAl~~~~~~~~---~~~l~~Gvemi~k~l~~vL~~~GV~~I~~~ 144 (194)
T PRK14162 91 LAKDVLPAMDNLERALAVKADDEA---AKQLKKGVQMTLDHLVKALKDHGVTEIKAD 144 (194)
T ss_pred HHHHHhhHHhHHHHHHhccccchh---HHHHHHHHHHHHHHHHHHHHHCCCEEeCCC
Confidence 456777777777765543221111 1456667777666655 6666666666654
No 64
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=38.39 E-value=5.2e+02 Score=30.47 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Q 009047 86 ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR 124 (545)
Q Consensus 86 I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~ 124 (545)
.++.+.+-+.++..++..+.+.....+.+.+.+++|..+
T Consensus 309 ~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~ 347 (726)
T PRK09841 309 VLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEK 347 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence 344555556666666666666666667777777666654
No 65
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=38.02 E-value=6.6e+02 Score=28.69 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=57.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHh
Q 009047 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIA 153 (545)
Q Consensus 74 q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIs 153 (545)
+.++.....|+.+...+.+..+++..++..-..-+..|..-+.+-.+.-..-..++..+.-+...=+-+.+|.--+.++.
T Consensus 369 ~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~ 448 (569)
T PRK04778 369 ERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLE 448 (569)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 44555555677777777777777777766666666666554444444444444444444433332223334443333332
Q ss_pred ccCHHHHHHHHHHHHHHHcccCCCCcCccH
Q 009047 154 GKQYYAAVQLHAQSALMLEREGLQTVGALQ 183 (545)
Q Consensus 154 eK~yl~Av~LL~~s~~ll~~~eL~~I~AL~ 183 (545)
.|..+.+-+.+-...++. .=.++.|+.
T Consensus 449 --~~~~~~~~i~~l~~~L~~-g~VNm~ai~ 475 (569)
T PRK04778 449 --MFFEVSDEIEALAEELEE-KPINMEAVN 475 (569)
T ss_pred --HHHHHHHHHHHHHHHhcc-CCCCHHHHH
Confidence 244555555555566666 555666665
No 66
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=37.76 E-value=3.3e+02 Score=27.83 Aligned_cols=75 Identities=16% Similarity=0.266 Sum_probs=50.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHh
Q 009047 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (545)
Q Consensus 46 ~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s 125 (545)
+.......|+.+...+.+.+..+|.. +.+...+++.|+..+..++.+-. -..|..|=+.|+.....|.+++.+.
T Consensus 26 ~k~~~ie~LE~qLk~L~k~~~~lv~~-r~eLa~~~~eFa~s~~~L~~~E~-----~~~Ls~als~laev~~~i~~~~~~q 99 (234)
T cd07665 26 EKLQEVECEEQRLRKLHAVVETLVNH-RKELALNTALFAKSLAMLGSSED-----NTALSRALSQLAEVEEKIEQLHQEQ 99 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888888877764 58889999999999888888774 2233344444444445555555554
Q ss_pred h
Q 009047 126 V 126 (545)
Q Consensus 126 ~ 126 (545)
.
T Consensus 100 a 100 (234)
T cd07665 100 A 100 (234)
T ss_pred H
Confidence 4
No 67
>PRK14154 heat shock protein GrpE; Provisional
Probab=37.39 E-value=2.4e+02 Score=28.34 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhHHHhhccH-HHHHHHHhccCHHHHHHHHHHHHH-HHcccCCCCcCc
Q 009047 126 VTLRHIISLLDQIEGIAKVP-ARIEKLIAGKQYYAAVQLHAQSAL-MLEREGLQTVGA 181 (545)
Q Consensus 126 ~~~~~mL~iLd~Ie~L~~vP-~kIe~lIseK~yl~Av~LL~~s~~-ll~~~eL~~I~A 181 (545)
.-.+.+|.++|.++...... ..-+.+ +.|..-++++.+.+. +|.+..+..|.+
T Consensus 103 ~~~~~LLpVlDnLeRAL~~~~~~~~~~---~~l~eGvemi~k~l~~vL~k~GVe~I~~ 157 (208)
T PRK14154 103 QLITDLLPVADSLIHGLESPASEDPQV---KSMRDGMSLTLDLLHNTLAKHGVQVINP 157 (208)
T ss_pred HHHHHHhhHHhHHHHHHhcccccchhH---HHHHHHHHHHHHHHHHHHHHCCCEEecC
Confidence 34567788888887765432 111111 446666666655555 566666666554
No 68
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=37.39 E-value=6.8e+02 Score=31.44 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=46.6
Q ss_pred hhcCCCch-hHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHH
Q 009047 40 HILTSKDR-EGEVQILKDQNDIIEEVVDEV------VHAYHTGFNKAIQN-------YSQILRLFSESAESIKELKVDLA 105 (545)
Q Consensus 40 ~lLss~~~-E~~~~~Le~~~~~l~~~L~~v------V~eh~q~FN~sI~s-------y~~I~~~I~~Sq~~i~~lK~~L~ 105 (545)
.-|.+.|. ...+..+++....+++.|+.+ |.+|.......-.. -......+...+.++..+++.+.
T Consensus 761 ~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 840 (1201)
T PF12128_consen 761 QELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELN 840 (1201)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33433333 335566666666666666554 44544443444443 55666667777777777777777
Q ss_pred HHHHHhccCcHHH
Q 009047 106 EAKRRLGTRNKQL 118 (545)
Q Consensus 106 ~ak~~L~~r~~eL 118 (545)
.++..+..++.+|
T Consensus 841 ~~~~~~~~~~~~l 853 (1201)
T PF12128_consen 841 QLQKEVKQRRKEL 853 (1201)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776665555
No 69
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.12 E-value=6.6e+02 Score=28.74 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=95.8
Q ss_pred HHHHHHHhHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHH
Q 009047 65 VDEVVHAYHTGFNKAIQNYSQI----LRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEG 140 (545)
Q Consensus 65 L~~vV~eh~q~FN~sI~sy~~I----~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~ 140 (545)
+...|.+.+.+--..|..-.+= +...-.-|+++..|+..|+.+...-..--.-|.++...+++..-.-+.|.+-..
T Consensus 54 igaalEEqSggal~rmPRaakd~~~Lq~Da~~Lq~kma~il~el~~aegesadCiAaLaRldn~kQkleaA~esLQdaaG 133 (828)
T KOG4182|consen 54 IGAALEEQSGGALARMPRAAKDSAALQADAHRLQEKMAAILLELAAAEGESADCIAALARLDNKKQKLEAAKESLQDAAG 133 (828)
T ss_pred HhHHHHHhccchHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhccHHHHHHHHHHHHHhhcc
Confidence 3444455555544444443332 333334566677777777766655444456788888999998888899999999
Q ss_pred hhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 009047 141 IAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (545)
Q Consensus 141 L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~l 208 (545)
+-+.-..+|.-.+.++...|.+.|..-.+-+. --..+......|.+|+-.+..|.-+.---|.+++
T Consensus 134 l~nL~a~lED~Fa~gDL~~aadkLaalqkcL~--A~~elaefAe~qkQlE~~edRLEAlaqPrltda~ 199 (828)
T KOG4182|consen 134 LGNLLAELEDGFARGDLKGAADKLAALQKCLH--AQEELAEFAERQKQLEDFEDRLEALAQPRLTDAF 199 (828)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 99999999999999999999888764444332 1234556677888888888877666555554443
No 70
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=36.92 E-value=4.4e+02 Score=26.28 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH--hh
Q 009047 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR--SV 126 (545)
Q Consensus 49 ~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~--s~ 126 (545)
..+..|+.+...+-+.+..+|..| .+...+++.|+.-...++.+-. ...|..+=..++..-..+.+++.+ ..
T Consensus 19 ~~i~~Le~~Lk~l~~~~e~lv~~r-~ela~~~~~f~~s~~~L~~~E~-----~~~Ls~al~~la~~~~ki~~~~~~qa~~ 92 (224)
T cd07623 19 QQIENLDQQLRKLHASVESLVNHR-KELALNTGSFAKSAAMLSNCEE-----HTSLSRALSQLAEVEEKIEQLHGEQADT 92 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHh-HHHhhccHHHHHHHHhcc-CHHHHHHHHHHHHHHHcccCCCC-----------cCccHHHHHHHHHhH
Q 009047 127 TLRHIISLLDQ-IEGIAKVPARIEKLIAGK-QYYAAVQLHAQSALMLEREGLQT-----------VGALQDVRSELTKLR 193 (545)
Q Consensus 127 ~~~~mL~iLd~-Ie~L~~vP~kIe~lIseK-~yl~Av~LL~~s~~ll~~~eL~~-----------I~AL~dLR~~L~~qe 193 (545)
....+.+.|+. +.-+.+|++-+.....-- .|..|..-|..-...+.+....+ |.....--......-
T Consensus 93 d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~f 172 (224)
T cd07623 93 DFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEF 172 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 009047 194 GVLFYKVLEDLHA 206 (545)
Q Consensus 194 ~~L~d~LiEELh~ 206 (545)
..+-+.+-.||.+
T Consensus 173 e~is~~~k~El~r 185 (224)
T cd07623 173 EEISKTIKKEIER 185 (224)
T ss_pred HHHHHHHHHHHHH
No 71
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.00 E-value=6.2e+02 Score=30.27 Aligned_cols=163 Identities=10% Similarity=0.089 Sum_probs=100.0
Q ss_pred CCCCchhHHHhhcCC--------CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 009047 30 PRFDSLPHVVHILTS--------KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELK 101 (545)
Q Consensus 30 ~~fd~l~~vl~lLss--------~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK 101 (545)
++|+|..+.-..... +.-+...+.|+++....+..=..-|+..+..+..++-.|......+..-...+..++
T Consensus 47 ~~~~~~~l~~~f~~~~~eL~~L~e~~qnk~~~~e~~~~~~q~s~~kkv~~lr~k~~~a~~l~~~ld~~~~~v~~~vv~lg 126 (763)
T KOG3745|consen 47 KDLDPKGLIKTFENEIKELTLLDERYQNKIRMLEEQMSTEQNSYKKKVDKLREKNSTALLLFLQLDDNIFPVSYKVVHLG 126 (763)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccccccccccccHH
Confidence 577777665444211 122333444555555555555666777777788888888888888888888888888
Q ss_pred HHHHHHHHHhcc--CcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCc
Q 009047 102 VDLAEAKRRLGT--RNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTV 179 (545)
Q Consensus 102 ~~L~~ak~~L~~--r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I 179 (545)
+.|+.+...-.. .+.+|.+.|.+-..-++ ..+ ++.++..+ -+.-++|++++..=+.+.+..+..
T Consensus 127 q~Le~v~~~r~r~~~a~~lir~~~eF~s~~~-~~i---~s~i~~~~--------~~k~leaa~~~~kLl~isnel~~~-- 192 (763)
T KOG3745|consen 127 QQLETVIKPRSRAVDAQELIRYYNEFLSGGR-QYI---NSDIFTSA--------FDKNLEAADRIKKLLLISNELPYG-- 192 (763)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhccCc-hhH---HHHHhcCh--------hhhHHHHHHHHHHHHHHhccCCcc--
Confidence 888877665311 11222222222211110 011 11111111 246688999888777777665444
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009047 180 GALQDVRSELTKLRGVLFYKVLEDLHAH 207 (545)
Q Consensus 180 ~AL~dLR~~L~~qe~~L~d~LiEELh~~ 207 (545)
-....+..++...+.|-..++||..+.
T Consensus 193 -~f~~tka~I~k~~~~lE~~lleeF~~~ 219 (763)
T KOG3745|consen 193 -KFSETKARIEKKYEVLEQNLLEEFNSA 219 (763)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888999999999999999998653
No 72
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.71 E-value=6.7e+02 Score=30.13 Aligned_cols=124 Identities=15% Similarity=0.209 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHhHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHH
Q 009047 58 NDIIEEVVDEVVHAYHTGF----NKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIIS 133 (545)
Q Consensus 58 ~~~l~~~L~~vV~eh~q~F----N~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~ 133 (545)
++.+-..|+..+..|--.. |.-.+-|-..++.+..-+..++.+|..+...+..|..-..+ +|.
T Consensus 46 ~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~e-------------Liv 112 (800)
T KOG2176|consen 46 HKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKE-------------LIV 112 (800)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-------------HHH
Confidence 3556677777777765443 33344444444555555555555555555544444333322 233
Q ss_pred HHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHhHhcCC
Q 009047 134 LLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (545)
Q Consensus 134 iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~lYlK~ 212 (545)
.+ .+-++....+++...|++++..|+..++- -+.+++++.+.+-----.-+|+| .++|++-
T Consensus 113 ~~---------e~lv~~r~~~rnit~ai~~l~~Cl~vLEl--------~sK~~e~~s~kqyy~aLktle~l-E~~yL~~ 173 (800)
T KOG2176|consen 113 KK---------EDLVRCRTQSRNITEAIELLTLCLPVLEL--------YSKLQEQMSEKQYYPALKTLESL-EKVYLPR 173 (800)
T ss_pred HH---------HHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHhccHHHHHHHHHHH-HHHHHHh
Confidence 33 33355556667777788887777777754 34566666554433333445666 5666663
No 73
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=34.04 E-value=6.5e+02 Score=27.78 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 009047 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS--QILRLFSESAESIKELKVDLAEAK 108 (545)
Q Consensus 48 E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~--~I~~~I~~Sq~~i~~lK~~L~~ak 108 (545)
....++|++....+...++..+..+.+.++..-..+. .-...+...++++..+.+.|..+-
T Consensus 258 ~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL~~a~ 320 (432)
T TIGR00237 258 DELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAAL 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777778888777777776555543 223445666666666666665543
No 74
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=34.03 E-value=4.6e+02 Score=25.61 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 009047 51 VQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES 96 (545)
Q Consensus 51 ~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~ 96 (545)
...|+.....+.+.+..+|. +.++...+++.|+.....++.+...
T Consensus 33 ~~~le~~Lk~l~~~~~~l~~-~~~~l~~~~~e~~~~~~~la~~E~~ 77 (236)
T PF09325_consen 33 VDKLEEQLKKLYKSLERLVK-RRQELASALAEFGSSFSQLAKSEEE 77 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccCC
Confidence 34444555555555544444 4577777778888777776666554
No 75
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=33.96 E-value=4.5e+02 Score=25.58 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=11.7
Q ss_pred hHHHHHHHHHhHhhhC
Q 009047 13 KAYLREELARIEVSWV 28 (545)
Q Consensus 13 ~~~l~evL~~I~~eW~ 28 (545)
...-+.+++.+...|.
T Consensus 3 t~~~~~v~da~w~~~~ 18 (165)
T PF09602_consen 3 TKPYENVMDAFWKQWS 18 (165)
T ss_pred cchHHHHHHHHHHHHH
Confidence 3455678888888888
No 76
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=33.90 E-value=7.9e+02 Score=31.07 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhc
Q 009047 84 SQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAG 154 (545)
Q Consensus 84 ~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIse 154 (545)
.+....+..+-+++..++..|.++...+....++.++|-..+..+...|+.+.. +.+.+.++++.+...
T Consensus 528 q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e--~~~~~~d~l~~le~~ 596 (1317)
T KOG0612|consen 528 QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE--ENRDLEDKLSLLEES 596 (1317)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh--ccccHHHHHHHHHHH
Confidence 555666777788888888888888888888888888888888888887776654 555555555555444
No 77
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=33.68 E-value=5.2e+02 Score=26.22 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Q 009047 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQ-ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWY 123 (545)
Q Consensus 46 ~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~-I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~ 123 (545)
+....+...-+....+...=...+..=.+.|...+.+|-. -+..|+..+.++..-|=.+-.||..+.....+|+.--.
T Consensus 90 ~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~kae~elr~A~~ 168 (220)
T cd07617 90 PYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAEHELRVAQT 168 (220)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3455555565666666655555665666788888888777 56788888888888888888888887664455544333
No 78
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=33.49 E-value=4.5e+02 Score=25.35 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=38.2
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc
Q 009047 64 VVDEVVHAYHTGFNKAIQNYSQILRL-FSESAESIKELKVDLAEAKRRLG 112 (545)
Q Consensus 64 ~L~~vV~eh~q~FN~sI~sy~~I~~~-I~~Sq~~i~~lK~~L~~ak~~L~ 112 (545)
+|...|..=.+.||--...|.++++. +.+-.++|..+|.-++.++..++
T Consensus 90 dl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~ 139 (157)
T COG3352 90 DLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLR 139 (157)
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 34445566678899999999888888 78888888888888888877654
No 79
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.40 E-value=4.7e+02 Score=25.59 Aligned_cols=72 Identities=4% Similarity=0.080 Sum_probs=56.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHH
Q 009047 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQ 117 (545)
Q Consensus 46 ~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~e 117 (545)
+++..+..+-...+.+...++.+...+...|...|.-|......|...-..=.+.......+...|..++.+
T Consensus 67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~ 138 (200)
T cd07624 67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLE 138 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777788888889999989889999999999988888877776666666677766666666544
No 80
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=33.07 E-value=8.1e+02 Score=28.22 Aligned_cols=92 Identities=15% Similarity=0.246 Sum_probs=51.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhc
Q 009047 75 GFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAG 154 (545)
Q Consensus 75 ~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIse 154 (545)
+.|--+.++.+=...+..+.+.-..+|..+.+=...++..-++| -. +++.+..-=.+.+.+-++
T Consensus 126 ~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~l-------------Ek---~Le~i~~~l~qf~~lt~~ 189 (570)
T COG4477 126 DLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPEL-------------EK---KLENIEEELSQFVELTSS 189 (570)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH-------------HH---HHHHHHHHHHHHHHhccC
Confidence 44445555555555555555555555555444444333332222 22 244444555678888899
Q ss_pred cCHHHHHHHHHHHHHHHc--ccCCCCcCcc
Q 009047 155 KQYYAAVQLHAQSALMLE--REGLQTVGAL 182 (545)
Q Consensus 155 K~yl~Av~LL~~s~~ll~--~~eL~~I~AL 182 (545)
++|.+|.++|.++-..+. +.-+..|++|
T Consensus 190 Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L 219 (570)
T COG4477 190 GDYIEAREVLEEAEEHMIALRSIMERIPSL 219 (570)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988776332 2234445544
No 81
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.42 E-value=5.2e+02 Score=25.81 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=33.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009047 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGT 113 (545)
Q Consensus 46 ~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~ 113 (545)
+....+.+++.+.+.+...|+++-++.. ..-+.+...+.++.+.+.++++...+.+..|..
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~-------~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN-------QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777654421 333344444555555555555554444444333
No 82
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=32.39 E-value=2.2e+02 Score=30.54 Aligned_cols=96 Identities=15% Similarity=0.265 Sum_probs=51.1
Q ss_pred HHHHHHHHhHhhhCCCCCCchhHHHh-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009047 15 YLREELARIEVSWVAPRFDSLPHVVH-ILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES 93 (545)
Q Consensus 15 ~l~evL~~I~~eW~~~~fd~l~~vl~-lLss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~S 93 (545)
.++.-|+.|...|....|...++.-. ...-.+.+.-...|++....++..+. ..|+..|-..+.....-+..+.+.
T Consensus 143 ~ie~~L~~i~~~W~~~~f~~~~~~~~~~~il~~~~~i~~~led~~~~L~~m~~---S~~~~~~~~~v~~w~~~L~~~~~i 219 (408)
T PF08393_consen 143 KIEQSLEKIKEEWKNMEFEFVPYKDKDVFILKNWDEIIQQLEDHLLTLQSMKS---SPFVKPFRDEVEEWEKKLNNIQEI 219 (408)
T ss_dssp HHHHHHHHHHHHHCC-B-EEEEETTT-CEEEE-CHHHHHHHHHHHHHHHHTCS---STTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhceeeeeccccchhheecchHHHHHHHHHHHHHHhcccc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999876666555532 11111234444555555544333221 355556666666666655555555
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 009047 94 AESIKELKVDLAEAKRRLGT 113 (545)
Q Consensus 94 q~~i~~lK~~L~~ak~~L~~ 113 (545)
-+....+-+.-.--...+.+
T Consensus 220 l~~w~~~Q~~W~yL~~if~~ 239 (408)
T PF08393_consen 220 LEEWMEVQRKWMYLEPIFSS 239 (408)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 55555555544444444444
No 83
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=32.30 E-value=7.1e+02 Score=27.32 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=30.1
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Q 009047 70 HAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQL 121 (545)
Q Consensus 70 ~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L 121 (545)
..-|.+....+..|..+...+..-...+..+...++.++..+...-.++.+|
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L 337 (412)
T PF04108_consen 286 RELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEEKESIQAYIDELEQL 337 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666666544444444444
No 84
>PRK09039 hypothetical protein; Validated
Probab=32.14 E-value=6.6e+02 Score=26.91 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=22.2
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009047 68 VVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGT 113 (545)
Q Consensus 68 vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~ 113 (545)
-...+-+.....-..|+.....+.--+.+|..||..|......|..
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555554444444433
No 85
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.81 E-value=1.2e+03 Score=29.68 Aligned_cols=168 Identities=9% Similarity=0.028 Sum_probs=0.0
Q ss_pred CCCCCCC-CChHHHHHHHHHhHhhhCCCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 009047 4 FDGLPIS-PEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQN 82 (545)
Q Consensus 4 ~~~~p~p-~d~~~l~evL~~I~~eW~~~~fd~l~~vl~lLss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~s 82 (545)
++|++.+ .+...+..+++.|...-. ....++..+...++.-...++..+++=.......-..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~ 441 (1311)
T TIGR00606 379 LDGFERGPFSERQIKNFHTLVIERQE-----------------DEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRT 441 (1311)
T ss_pred cCCCCCcccchHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHH
Q 009047 83 YSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQ 162 (545)
Q Consensus 83 y~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~ 162 (545)
.......+......+..+...|........ +|..+-.+-..+..-++.+..-........+|+. .-.-..
T Consensus 442 ~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~~ 511 (1311)
T TIGR00606 442 IELKKEILEKKQEELKFVIKELQQLEGSSD----RILELDQELRKAERELSKAEKNSLTETLKKEVKS------LQNEKA 511 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccChH----HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH------HHHHHH
Q ss_pred HHHHHHHHHcccCCCCcCccHHHHHHHHHhHHHHHHH
Q 009047 163 LHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYK 199 (545)
Q Consensus 163 LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~L~d~ 199 (545)
-|..-...++. ++.......+.|++|..+++.+.+.
T Consensus 512 ~le~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~k 547 (1311)
T TIGR00606 512 DLDRKLRKLDQ-EMEQLNHHTTTRTQMEMLTKDKMDK 547 (1311)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
No 86
>PF13514 AAA_27: AAA domain
Probab=31.71 E-value=3.8e+02 Score=33.19 Aligned_cols=152 Identities=17% Similarity=0.234 Sum_probs=93.9
Q ss_pred CCCCCCCCChHHHHHHHHHhHhhhCCC--CCCchhHHHh---hcCCCc-hhH-------HHHHHHHHHHHHHHHHHHHH-
Q 009047 4 FDGLPISPEKAYLREELARIEVSWVAP--RFDSLPHVVH---ILTSKD-REG-------EVQILKDQNDIIEEVVDEVV- 69 (545)
Q Consensus 4 ~~~~p~p~d~~~l~evL~~I~~eW~~~--~fd~l~~vl~---lLss~~-~E~-------~~~~Le~~~~~l~~~L~~vV- 69 (545)
-||.|.| ...|...|.-|+.+-+.. .||--...-. ++...+ ... -+..|-...+.+++..+.+.
T Consensus 67 ~~g~~~~--e~~L~~~Lgg~dr~~f~~iF~~d~~~L~~gG~~l~~~~gdlg~~Lf~agaG~~~l~~~~~~L~~ea~~Lfk 144 (1111)
T PF13514_consen 67 PDGQPLP--EDWLAALLGGLDRETFEAIFSFDHEELREGGESLLEAEGDLGQLLFSAGAGLGSLSQVLKQLDKEADELFK 144 (1111)
T ss_pred CCCCCCC--HHHHHHHHcCCCHHHHHHHHcCCHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHHHHHHhhC
Confidence 3666555 556777777777776642 2222211111 111110 000 01113334455555555555
Q ss_pred -HHhHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccH
Q 009047 70 -HAYHTGFNKAIQNYSQILRLFSESAESIK---ELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVP 145 (545)
Q Consensus 70 -~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~---~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP 145 (545)
......||..+..|..+...|.+...+.. .++..+..+...+..-+.+++++..+...+..++..+..+.+++.+.
T Consensus 145 prg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~ 224 (1111)
T PF13514_consen 145 PRGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLE 224 (1111)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 23455788888888888888877766554 67777788888888888888888888888888888888888888877
Q ss_pred HHHHHHHhccCH
Q 009047 146 ARIEKLIAGKQY 157 (545)
Q Consensus 146 ~kIe~lIseK~y 157 (545)
.++..+-.-..|
T Consensus 225 ~~l~~l~~~~~~ 236 (1111)
T PF13514_consen 225 AELAELGEVPDF 236 (1111)
T ss_pred HHHHhcCCcCCC
Confidence 777766444444
No 87
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=31.31 E-value=3e+02 Score=25.35 Aligned_cols=89 Identities=16% Similarity=0.247 Sum_probs=53.4
Q ss_pred HHHHHHhccCcHHHHH-HHHHhhHHHH-HHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCcc
Q 009047 105 AEAKRRLGTRNKQLHQ-LWYRSVTLRH-IISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGAL 182 (545)
Q Consensus 105 ~~ak~~L~~r~~eL~~-L~~~s~~~~~-mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL 182 (545)
..|+..+.......-. +-.+...++. +-.++.....|..+-.+|+.....+....|...-..+++.+++ .+ ++.-+
T Consensus 29 ~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk~~~~-~i-~~~~v 106 (171)
T PF03357_consen 29 KKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKALKKINK-QI-NLDKV 106 (171)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHHHHHHHH-ST-TSCCH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hhhhH
Confidence 3444555444333322 2222333333 4445555677778888999999999999988888888888876 55 57777
Q ss_pred HHHHHHHHHhHHH
Q 009047 183 QDVRSELTKLRGV 195 (545)
Q Consensus 183 ~dLR~~L~~qe~~ 195 (545)
.++...+..+-..
T Consensus 107 ~~~~d~~~e~~e~ 119 (171)
T PF03357_consen 107 EKLMDDFQEEMED 119 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665443
No 88
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=30.82 E-value=7.9e+02 Score=27.39 Aligned_cols=196 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCCCCCCCChHHHHHHHHHhHhhhCC---CCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009047 4 FDGLPISPEKAYLREELARIEVSWVA---PRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAI 80 (545)
Q Consensus 4 ~~~~p~p~d~~~l~evL~~I~~eW~~---~~fd~l~~vl~lLss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI 80 (545)
|.|.=-......++++...+...|.. .++||+++--. ..-+.++..|++....++..|..++....+.- .+.
T Consensus 254 ~~g~~g~~~~~~~~~i~~~~~~~~~~~~~~~yd~ld~~~~----~~w~~~~~~f~~~i~~lE~~l~~~l~~~f~~~-~s~ 328 (579)
T PF08385_consen 254 FGGLRGKELSEGIDEIEEEFNEAYEPFKSLDYDILDVSNE----EEWERDFSEFRERIEDLERRLANILRQAFDDC-SSP 328 (579)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCCCcch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CCH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHH
Q 009047 81 QNYSQILRLFSESAESIKELKVDLAEAKRRLGTR-NKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYA 159 (545)
Q Consensus 81 ~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r-~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~ 159 (545)
...=.++..+..=- .-..+|..+......|-.. ..+|..+-..-...+. ..-.+.....+..|.-.-..+--+....
T Consensus 329 ~~~~~ll~~f~~L~-~Rp~I~~~l~~~~~~ll~~~~~ei~~~~~~f~~~~~-~~~~~~~~~~~~~Ppvag~i~w~r~L~~ 406 (579)
T PF08385_consen 329 EEAFRLLQKFKSLL-NRPRIRKALQEKYEQLLQQFKEEIDQLKKIFDNQKE-KSETDNPPLPRNLPPVAGAIIWARQLER 406 (579)
T ss_pred HHHHHHHHHHHhHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccccccccCCcHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHH
Q 009047 160 AVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHA 206 (545)
Q Consensus 160 Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~ 206 (545)
=++...+.+..+.++++..-+.-+.+........+.|-...-+-...
T Consensus 407 ri~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~e~~~~~~ 453 (579)
T PF08385_consen 407 RIKEPMQRLKSLLGPDWLDSPEGKELKQKYNELLKKLDEYEKEIFEE 453 (579)
T ss_pred HHhHHHHHHHHhccchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
No 89
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.51 E-value=9.6e+02 Score=29.08 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHH
Q 009047 83 YSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL 135 (545)
Q Consensus 83 y~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iL 135 (545)
.+++...|.+.+-++...|..++..+........++.+|-.+-++|..++..|
T Consensus 453 ~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 453 LQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555566665555555555556666666666665555444
No 90
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.01 E-value=8.8e+02 Score=27.72 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHH-HhHHHhhccHHHHHHHHhccCHHHH
Q 009047 82 NYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL-DQIEGIAKVPARIEKLIAGKQYYAA 160 (545)
Q Consensus 82 sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iL-d~Ie~L~~vP~kIe~lIseK~yl~A 160 (545)
....+...=...+..|..+|+....++..|..++.. |..-+..| +.++.+-.-=++.+.++..++|.+|
T Consensus 123 ~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~----------~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A 192 (560)
T PF06160_consen 123 ELDELLESEEKNREEIEELKEKYRELRKELLAHSFS----------YGPAIEELEKQLENIEEEFSEFEELTENGDYLEA 192 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 333444444444444555555555554444333332 22223322 2345555667899999999999999
Q ss_pred HHHHHHHHHHH
Q 009047 161 VQLHAQSALML 171 (545)
Q Consensus 161 v~LL~~s~~ll 171 (545)
-+++...-.-+
T Consensus 193 ~eil~~l~~~~ 203 (560)
T PF06160_consen 193 REILEKLKEET 203 (560)
T ss_pred HHHHHHHHHHH
Confidence 99987665544
No 91
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.93 E-value=7.1e+02 Score=26.60 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=34.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Q 009047 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR 124 (545)
Q Consensus 63 ~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~ 124 (545)
..+...+..+...|+..|.+-.++...+.+-...|..+=.+|...-..+..+.+++.++...
T Consensus 165 ~~~~~~~~g~~~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~~ 226 (359)
T COG1463 165 NEAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLDN 226 (359)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444445555556666666666666666666666555555555555555555555444433
No 92
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.80 E-value=7.2e+02 Score=26.59 Aligned_cols=129 Identities=15% Similarity=0.211 Sum_probs=85.2
Q ss_pred CCCCChHHHHHHHHHhHhhhCCCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 009047 8 PISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQIL 87 (545)
Q Consensus 8 p~p~d~~~l~evL~~I~~eW~~~~fd~l~~vl~lLss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~ 87 (545)
+.|.++..+-.-+..+-.+|...+.+-+..++.-.... .. ..|.+..+.+++ +-.-+++..+++...|.+-..++
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~g-~~---~~l~~~l~~l~~-~~~~ln~~~~~i~~~i~~l~~~~ 210 (359)
T COG1463 136 QVPIDLEDLLGDLLLLLGGLDPDRLNAILNEAAAALAG-TG---PQLNALLDNLAQ-FTDALNARDGDIGALIANLNQLL 210 (359)
T ss_pred cCcccHHHHHHHHHHHhccCCchhhHHHHHHHHHHhcc-cc---hHHHHHHHHHHH-HHHHHHhcchhHHHHHHHHHHHH
Confidence 44577777777777777777755444333333322111 22 233333333333 34456888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCH
Q 009047 88 RLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQY 157 (545)
Q Consensus 88 ~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~y 157 (545)
..+..+.+++..+-.++......+..+++.|..+ ++.+...=..+..++++-+.
T Consensus 211 ~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~l~~~----------------l~~~~~~~~~~~~ll~~~r~ 264 (359)
T COG1463 211 DSLAAASDQLDRLLDNLATLTAALAARRDALDDA----------------LAALSALAATVNDLLAENRP 264 (359)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhchHHHHHH----------------HHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999988888887766543 33444455556666666544
No 93
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=29.77 E-value=9.6e+02 Score=28.06 Aligned_cols=123 Identities=12% Similarity=0.118 Sum_probs=72.8
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHhhHH-HHHHHHHHhHHHhhccHH
Q 009047 69 VHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTR-NKQLHQLWYRSVTL-RHIISLLDQIEGIAKVPA 146 (545)
Q Consensus 69 V~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r-~~eL~~L~~~s~~~-~~mL~iLd~Ie~L~~vP~ 146 (545)
|...+...+-.+..+......|-..+..|..+|++|..++...... .+++.++..--.+. +.+.++...|+.++..-.
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666677777777777777888999999999887554 34554443333333 334455556666655433
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHHHHHHHHHHHHH
Q 009047 147 RIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLH 205 (545)
Q Consensus 147 kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh 205 (545)
+... .+-.++.-+..-.+. -++.|..++..|+.+ ..|+.|-.||.
T Consensus 310 ~e~e-----~~~~qI~~le~~l~~-------~~~~leel~~kL~~~--sDYeeIK~ELs 354 (629)
T KOG0963|consen 310 EERE-----KHKAQISALEKELKA-------KISELEELKEKLNSR--SDYEEIKKELS 354 (629)
T ss_pred HHHH-----HHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh--ccHHHHHHHHH
Confidence 2211 112222222222222 345778888888877 77888888883
No 94
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=29.69 E-value=5.4e+02 Score=30.13 Aligned_cols=122 Identities=19% Similarity=0.265 Sum_probs=78.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHH--HHHHH-H
Q 009047 76 FNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPA--RIEKL-I 152 (545)
Q Consensus 76 FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~--kIe~l-I 152 (545)
|..++..|..+-..|+..-.++.. -.+.|..+...+..+-+..+++.-..++..-+. .++.+ -
T Consensus 1 ~~~~~~~f~~Ld~~i~~v~~~~~~--------------iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~ 66 (710)
T PF07393_consen 1 FQEAIDSFQQLDERISEVSQKAVH--------------IGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFR 66 (710)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHhc--------------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhh
Confidence 344556666666666654333333 345555555556666666666666666555443 45544 2
Q ss_pred hcc---CHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHhHhcCCCc
Q 009047 153 AGK---QYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEY 214 (545)
Q Consensus 153 seK---~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~lYlK~~~ 214 (545)
..+ +-..|..++. -+..+.+ ++..++.....+..++...+.+-..|++|+ +.-|.++.+
T Consensus 67 ~~~~~~~~~~~A~il~-~L~~ls~-~~~~~~~~~~~~~~I~~~~e~fE~~LL~eF-e~ay~~~d~ 128 (710)
T PF07393_consen 67 TFTDPEDPEEAAKILR-NLLRLSK-ELSDIPGFEEARENIEKYCEIFENALLREF-EIAYREGDY 128 (710)
T ss_pred cccCccchHHHHHHHH-HHHHHHH-hcCCchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCH
Confidence 222 3377777765 5555555 666999999999999999999999999999 455776654
No 95
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=29.16 E-value=5.1e+02 Score=24.67 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=60.7
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHH
Q 009047 64 VVDEVVHAYHTGFNKAIQNYSQILRLFSESAE-------SIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD 136 (545)
Q Consensus 64 ~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~-------~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd 136 (545)
.|.+-|.+-.....+-=..++..+..++.-++ ....++..|......+..-+++|..+-.+...+.....-|.
T Consensus 53 ~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 53 QLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444544444 44556666666666666666666677777777777777777
Q ss_pred hHHHhhccHHHHHHHHhccCHHHH
Q 009047 137 QIEGIAKVPARIEKLIAGKQYYAA 160 (545)
Q Consensus 137 ~Ie~L~~vP~kIe~lIseK~yl~A 160 (545)
.=-.+..+|+-+..|+..+.....
T Consensus 133 ~~~~~~~~P~ll~Dy~~~~~~~~~ 156 (177)
T PF13870_consen 133 QQGGLLGVPALLRDYDKTKEEVEE 156 (177)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHHH
Confidence 777788899999888877766543
No 96
>PRK14148 heat shock protein GrpE; Provisional
Probab=28.92 E-value=2.8e+02 Score=27.61 Aligned_cols=54 Identities=17% Similarity=0.356 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHH-HHcccCCCCcCcc
Q 009047 126 VTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSAL-MLEREGLQTVGAL 182 (545)
Q Consensus 126 ~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~-ll~~~eL~~I~AL 182 (545)
.-.+.+|.++|.++........-+ ..+.|..-++++.+.+. .+.+..+..|+++
T Consensus 91 ~~~~~LLpV~DnlerAl~~~~~~~---~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~ 145 (195)
T PRK14148 91 KFAKELLPVIDSIEQALKHEVKLE---EAIAMKEGIELTAKMLVDILKKNGVEELDPK 145 (195)
T ss_pred HHHHHHhhHHhHHHHHHhccccch---hHHHHHHHHHHHHHHHHHHHHHCCCEEeCCC
Confidence 345667777777766544322111 11345555555555544 5555555555443
No 97
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=28.81 E-value=9.2e+02 Score=27.55 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=26.3
Q ss_pred HHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 009047 138 IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALML 171 (545)
Q Consensus 138 Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll 171 (545)
++.+-.-=++.+.+..+++|.+|.+.+.+.-.-+
T Consensus 174 l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~ 207 (569)
T PRK04778 174 LENLEEEFSQFVELTESGDYVEAREILDQLEEEL 207 (569)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4555566778999999999999999987655533
No 98
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=28.67 E-value=4.5e+02 Score=25.29 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHH
Q 009047 99 ELKVDLAEAKRRLGTRNKQLHQLWYR 124 (545)
Q Consensus 99 ~lK~~L~~ak~~L~~r~~eL~~L~~~ 124 (545)
.+...+..++..|...-+.|..+..+
T Consensus 142 ~~~~~~~~~~~~l~~~lekL~~fd~~ 167 (204)
T PF04740_consen 142 SFIDSLEKAKKKLQETLEKLRAFDQQ 167 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 99
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.53 E-value=5.1e+02 Score=24.52 Aligned_cols=79 Identities=11% Similarity=0.173 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHh
Q 009047 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (545)
Q Consensus 47 ~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s 125 (545)
+...+..+-+.++.+...+..........|...+.-|..++..+.+.-..=..+-..+..+...+...+..+.+|-...
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~ 140 (218)
T cd07596 62 LGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAP 140 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5667777878888888888888888888899999999998888888888877888888888888888888777776543
No 100
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=28.05 E-value=6.1e+02 Score=25.19 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=68.2
Q ss_pred HHHHhccCc--HHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHH
Q 009047 107 AKRRLGTRN--KQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQD 184 (545)
Q Consensus 107 ak~~L~~r~--~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~d 184 (545)
||..+..++ .-|.-|-.+...-+.+-++..++..|.+.-..||..--+...+.|...-..+++.+++ ++ +|.-+.+
T Consensus 57 Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k-~~-~idkVd~ 134 (191)
T PTZ00446 57 AKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNN-EI-NTQKVEK 134 (191)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CHHHHHH
Confidence 444443333 3455555555555566677777888888888999999999999999999999999987 66 6888888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhH
Q 009047 185 VRSELTKLRGVLFYKVLEDLHAHL 208 (545)
Q Consensus 185 LR~~L~~qe~~L~d~LiEELh~~l 208 (545)
|..++..+... .+|+.+.|
T Consensus 135 lmDei~E~~e~-----~~EIseaL 153 (191)
T PTZ00446 135 IIDTIQENKDI-----QEEINQAL 153 (191)
T ss_pred HHHHHHHHHHH-----HHHHHHHH
Confidence 88888766542 45665555
No 101
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=27.79 E-value=2.8e+02 Score=31.86 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=6.5
Q ss_pred HhHHHhhccHHH
Q 009047 136 DQIEGIAKVPAR 147 (545)
Q Consensus 136 d~Ie~L~~vP~k 147 (545)
.++++|+++|.+
T Consensus 251 ~~~~~lk~ap~~ 262 (555)
T TIGR03545 251 ADLAELKKAPQN 262 (555)
T ss_pred HHHHHHHhccHh
Confidence 445555566654
No 102
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=27.32 E-value=3.8e+02 Score=22.59 Aligned_cols=53 Identities=11% Similarity=0.243 Sum_probs=32.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHH
Q 009047 79 AIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHI 131 (545)
Q Consensus 79 sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~m 131 (545)
++..+......+..-...|...+..+..++..+...+..|.+.+.+...+..+
T Consensus 43 s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L 95 (123)
T PF02050_consen 43 SVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKL 95 (123)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666677777777777777777777777655555555444444433333
No 103
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=27.18 E-value=4.5e+02 Score=23.36 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHH
Q 009047 99 ELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSAL 169 (545)
Q Consensus 99 ~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ 169 (545)
..++.+.++...+...-..+.++.....+...+-++-...+.....-+++-.++..++..+|..++.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 149 (181)
T PF12729_consen 79 EIEKEIDEARAEIDEALEEYEKLILSPEEKQLLEEFKEAWKAYRKLRDQVIELAKSGDNDEARAILNGEAR 149 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhHH
Confidence 33444444444433333444444333333333334444455566667788888888888888777665543
No 104
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=27.02 E-value=5.3e+02 Score=24.21 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=20.1
Q ss_pred HhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHH
Q 009047 152 IAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVR 186 (545)
Q Consensus 152 IseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR 186 (545)
-++++|..+++-+..........-+..+..++++.
T Consensus 123 k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 157 (191)
T cd07610 123 KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQERE 157 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45678888888877766655443333444443333
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=26.99 E-value=7.7e+02 Score=26.03 Aligned_cols=136 Identities=17% Similarity=0.221 Sum_probs=87.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Q 009047 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSE-SAESIKELKVDLAEAKRRLGTRNKQLHQLWYR 124 (545)
Q Consensus 46 ~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~-Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~ 124 (545)
....++..|.+....++..+..++ +.|+....-+..-..+...+.. -++.+..+|..|.+.+..|..++.+|.+|-.+
T Consensus 160 ~L~~D~~~L~~~~~~l~~~~~~l~-~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~e 238 (325)
T PF08317_consen 160 LLQEDYAKLDKQLEQLDELLPKLR-ERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEE 238 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777666665555444 4558888888888888887774 47888999999999999999999999888888
Q ss_pred hhHHHHHHHHHHh-HHHhhccHHHHHHHHh-ccCH-HHHHHHHHHHHHHHcccCCCCcCcc
Q 009047 125 SVTLRHIISLLDQ-IEGIAKVPARIEKLIA-GKQY-YAAVQLHAQSALMLEREGLQTVGAL 182 (545)
Q Consensus 125 s~~~~~mL~iLd~-Ie~L~~vP~kIe~lIs-eK~y-l~Av~LL~~s~~ll~~~eL~~I~AL 182 (545)
-...+.-++-+.. +.++..-=..++.... .+.| ..-+.-|...+..+.+-.-|.+-.+
T Consensus 239 l~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~~~ 299 (325)
T PF08317_consen 239 LEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGWKIVSI 299 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEEEE
Confidence 8777666655533 2222222223333332 2333 2334445666666665444444433
No 106
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.41 E-value=1e+03 Score=27.40 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh----HHHHH-HH---HH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-
Q 009047 47 REGEVQILKDQNDIIEEVVDEVVHAY----HTGFN-KA---IQ---NYSQILRLFSESAESIKELKVDLAEAKRRLGTR- 114 (545)
Q Consensus 47 ~E~~~~~Le~~~~~l~~~L~~vV~eh----~q~FN-~s---I~---sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r- 114 (545)
.+..++.|+.....++.+++.|-++- .+.|- .+ |. .|-.++.+|+--..-+.++.+....-......+
T Consensus 299 ~~~K~~llEkala~~edaI~~v~D~~~~d~~~~~~t~~~q~i~aYL~Y~~l~~tisR~~~~~~n~~~~~ls~~~~~~~k~ 378 (593)
T KOG2460|consen 299 YDQKLSLLEKALARCEDAIQNVRDEIKIDEKQRNSTLNGQIILAYLKYNKLLTTISRNEDAFTNLWNQWLSQQTSDPKKL 378 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhcccchHhhhhhhcchHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHhCccccccc
Confidence 35566677777777777777665421 22211 11 22 345555555544444444444333333222222
Q ss_pred -cHHHHHHHHHhhHHHHHHHHHHhHHHhhc------cHHH----------------HHHHHhccCHHHHHHHHHHHHHHH
Q 009047 115 -NKQLHQLWYRSVTLRHIISLLDQIEGIAK------VPAR----------------IEKLIAGKQYYAAVQLHAQSALML 171 (545)
Q Consensus 115 -~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~------vP~k----------------Ie~lIseK~yl~Av~LL~~s~~ll 171 (545)
-.+|.+| |+-+|+.|..|.+|-- ...+ -..|.+.++|-+|+-|.+++..-+
T Consensus 379 rpqdl~RL------Yd~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~syl 452 (593)
T KOG2460|consen 379 RPQDLERL------YDSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYL 452 (593)
T ss_pred CHHHHHHH------HHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344444 4445555544443321 1122 246788999999999999998877
Q ss_pred cc
Q 009047 172 ER 173 (545)
Q Consensus 172 ~~ 173 (545)
+.
T Consensus 453 qe 454 (593)
T KOG2460|consen 453 QE 454 (593)
T ss_pred HH
Confidence 65
No 107
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=26.02 E-value=1.4e+02 Score=26.11 Aligned_cols=87 Identities=15% Similarity=0.251 Sum_probs=56.4
Q ss_pred HHHHHhHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhh----HHHHHHHHHHhHHH
Q 009047 67 EVVHAYHTGFNKAIQ--NYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV----TLRHIISLLDQIEG 140 (545)
Q Consensus 67 ~vV~eh~q~FN~sI~--sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~----~~~~mL~iLd~Ie~ 140 (545)
+.+..+++.|...|+ ..-.+...+.-|...|..++..=. .. ..+.-++...|.... .+..+++.|..|..
T Consensus 4 ~~l~~~f~~i~~~V~~~~Wk~laR~LGLse~~I~~i~~~~~---~~-~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~ 79 (96)
T cd08315 4 ETLRRSFDHFIKEVPFDSWNRLMRQLGLSENEIDVAKANER---VT-REQLYQMLLTWVNKTGRKASVNTLLDALEAIGL 79 (96)
T ss_pred hHHHHHHHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHCC---CC-HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHccc
Confidence 345667777777775 566777888888888888877621 12 334456677777654 68888888888764
Q ss_pred hhccHHHHHHHHhccCH
Q 009047 141 IAKVPARIEKLIAGKQY 157 (545)
Q Consensus 141 L~~vP~kIe~lIseK~y 157 (545)
=..+..--+.+++++.|
T Consensus 80 ~~~Ae~I~~~l~~~~~~ 96 (96)
T cd08315 80 RLAKESIQDELISSGKF 96 (96)
T ss_pred ccHHHHHHHHHHHcCCC
Confidence 43333333455665554
No 108
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=25.82 E-value=8.1e+02 Score=25.91 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHH
Q 009047 60 IIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIE 139 (545)
Q Consensus 60 ~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie 139 (545)
.+...++.+.. .=..|......|..-...+.+.+.....+..+.......|.- +.|.+.-.+.-.|.+.+++..-+.
T Consensus 57 ~~~~~l~~L~~-~l~~L~~~~~~f~~~~~~~~~~r~~~~~~l~~~~~l~diLEl--P~Lm~~ci~~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 57 SLSDSLDSLLD-SLPELDEACQRFSSKAQKISEERKKASLLLENHDRLLDILEL--PQLMDTCIRNGNYSEALELSAHVR 133 (338)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHhcccHhhHHHHHHHHH
Confidence 33444444332 335566666666666666666666666665555555554432 455556666667777777776665
Q ss_pred Hhh
Q 009047 140 GIA 142 (545)
Q Consensus 140 ~L~ 142 (545)
.|.
T Consensus 134 ~L~ 136 (338)
T PF04124_consen 134 RLQ 136 (338)
T ss_pred HHH
Confidence 543
No 109
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.80 E-value=2.1e+02 Score=32.97 Aligned_cols=56 Identities=9% Similarity=0.167 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009047 54 LKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKR 109 (545)
Q Consensus 54 Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~ 109 (545)
|+...+.+.--|+.+=++--+-.|.--+.|-.+.+.+-.-+..+..|+.-|.+-++
T Consensus 48 letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlre 103 (705)
T KOG2307|consen 48 LETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLRE 103 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHH
Confidence 33334444444444444444444444444444444444444444443333333333
No 110
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=25.78 E-value=6.7e+02 Score=26.72 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=19.0
Q ss_pred HhhccHHHHHHHHhccCHHHHHHH
Q 009047 140 GIAKVPARIEKLIAGKQYYAAVQL 163 (545)
Q Consensus 140 ~L~~vP~kIe~lIseK~yl~Av~L 163 (545)
.|..+-..|..|+++++|.+.+..
T Consensus 244 Ql~ELRadIK~fvs~rk~de~lg~ 267 (302)
T PF07139_consen 244 QLAELRADIKHFVSERKYDEELGR 267 (302)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHhH
Confidence 455566789999999999887654
No 111
>PRK14151 heat shock protein GrpE; Provisional
Probab=25.55 E-value=2.6e+02 Score=27.23 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHH-HHcccCCCCcCcc
Q 009047 126 VTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSAL-MLEREGLQTVGAL 182 (545)
Q Consensus 126 ~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~-ll~~~eL~~I~AL 182 (545)
.-.+.+|.++|.++...+....-.. .-+.|..-++++.+.+. ++.+.++..|++.
T Consensus 71 ~~~~~LLpv~DnlerAl~~~~~~~~--~~~~~~~Gv~mi~k~l~~~L~k~Gv~~i~~~ 126 (176)
T PRK14151 71 KFAGDLLPVVDSLERGLELSSADDE--AIKPMREGVELTLKMFQDTLKRYQLEAVDPH 126 (176)
T ss_pred HHHHHHhhHHhHHHHHHhcccccch--hHHHHHHHHHHHHHHHHHHHHHCCCEEeCCC
Confidence 3456677777777765543111000 01446666666666554 6666666666554
No 112
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=25.52 E-value=7.3e+02 Score=26.77 Aligned_cols=30 Identities=30% Similarity=0.321 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 009047 427 AKELLDSILDSVVRIFENHVVVGELLESRS 456 (545)
Q Consensus 427 l~el~~slf~k~~avle~h~vv~ev~~~~~ 456 (545)
-+=+.+++|-.|+.++|+.=--+-+-..++
T Consensus 211 ~~fl~f~~~~~~vq~lQ~~YQ~~~Ly~l~A 240 (330)
T PF07851_consen 211 PQFLLFSLYQSVVQFLQYRYQRGCLYRLRA 240 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344568999999999999766565555554
No 113
>PRK11519 tyrosine kinase; Provisional
Probab=25.48 E-value=1.2e+03 Score=27.58 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Q 009047 86 ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLW 122 (545)
Q Consensus 86 I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~ 122 (545)
.++.+.+-+.++.+++..+.+.....+.+.+.++.|-
T Consensus 309 ~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~ 345 (719)
T PRK11519 309 VLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLL 345 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHH
Confidence 3444455555555555555555555555566665553
No 114
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=25.35 E-value=7.1e+02 Score=25.05 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=60.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhH---HHHHHHHHHhHHHhhccHHHHH
Q 009047 73 HTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT---LRHIISLLDQIEGIAKVPARIE 149 (545)
Q Consensus 73 ~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~---~~~mL~iLd~Ie~L~~vP~kIe 149 (545)
-+-+++-++.+-.....+.+..-++...+..|...+..|...+..+.+--..++. +...-...++++.|+.+|+.++
T Consensus 23 ~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~e 102 (204)
T COG5491 23 GQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFE 102 (204)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777777777799999999999999999877777554444443 4456667788999999999988
Q ss_pred HHH
Q 009047 150 KLI 152 (545)
Q Consensus 150 ~lI 152 (545)
+..
T Consensus 103 t~~ 105 (204)
T COG5491 103 TQF 105 (204)
T ss_pred HHH
Confidence 876
No 115
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=25.22 E-value=1.4e+03 Score=28.50 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=46.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CcHHHHHHHHH-hhHHHHHHHHHHhHHHhh
Q 009047 75 GFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGT---RNKQLHQLWYR-SVTLRHIISLLDQIEGIA 142 (545)
Q Consensus 75 ~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~---r~~eL~~L~~~-s~~~~~mL~iLd~Ie~L~ 142 (545)
..++.+..|++......+.+.+|.++++.|..+...+.. ...+|++.+.. ..+|...-+-+..++.+.
T Consensus 468 ~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l 539 (1195)
T KOG4643|consen 468 ELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELL 539 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888889999999999998888766543 45555554443 445555555555555443
No 116
>PRK14139 heat shock protein GrpE; Provisional
Probab=24.91 E-value=3.5e+02 Score=26.66 Aligned_cols=51 Identities=10% Similarity=0.157 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHH-HHcccCCCCcCcc
Q 009047 127 TLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSAL-MLEREGLQTVGAL 182 (545)
Q Consensus 127 ~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~-ll~~~eL~~I~AL 182 (545)
-.+.+|.++|.++........ ..+.|..-++++.+.+. ++.+..+..|+++
T Consensus 84 ~~~~LLpv~DnLerAl~~~~~-----~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~ 135 (185)
T PRK14139 84 FAESLLPVKDSLEAALADESG-----DLEKLREGVELTLKQLTSAFEKGRVVEINPV 135 (185)
T ss_pred HHHHHhhHHhHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHCCCceeCCC
Confidence 355677777777765433211 01335566666665554 5666566655554
No 117
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.87 E-value=1.1e+03 Score=27.02 Aligned_cols=124 Identities=14% Similarity=0.219 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHH
Q 009047 52 QILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHI 131 (545)
Q Consensus 52 ~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~m 131 (545)
..|+++...+.+....+. +.++..-..|+.|...+.+..+++..+.+........|..-+.+=++-...-..++..
T Consensus 347 ~~l~~~l~~l~~~~~~~~----~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~ 422 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLE----ERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQK 422 (560)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333332 3444455556666666666666666666666655555544333333333333333322
Q ss_pred HHHHHh-HHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccH
Q 009047 132 ISLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQ 183 (545)
Q Consensus 132 L~iLd~-Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~ 183 (545)
+....- |+. ..+|.-=+.++. .|..|.+-+.+-...++...+ ++..+.
T Consensus 423 l~~ikR~lek-~nLPGlp~~y~~--~~~~~~~~i~~l~~~L~~~pi-nm~~v~ 471 (560)
T PF06160_consen 423 LREIKRRLEK-SNLPGLPEDYLD--YFFDVSDEIEELSDELNQVPI-NMDEVN 471 (560)
T ss_pred HHHHHHHHHH-cCCCCCCHHHHH--HHHHHHHHHHHHHHHHhcCCc-CHHHHH
Confidence 222211 111 134444444444 577888888888888887443 444433
No 118
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=24.58 E-value=2.2e+02 Score=29.76 Aligned_cols=143 Identities=22% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHhHhhhCCCCCCchhHHHhhcCCC------chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 009047 17 REELARIEVSWVAPRFDSLPHVVHILTSK------DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLF 90 (545)
Q Consensus 17 ~evL~~I~~eW~~~~fd~l~~vl~lLss~------~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I 90 (545)
.+||-.+-.+|.+..-.=+..++..+.+. +++++...|+++.+..+ ..+.++....+...+++. ...+
T Consensus 83 ~~VL~~lgkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~-----sL~~r~~elk~~~~~~se-~rv~ 156 (268)
T PF11802_consen 83 PEVLLTLGKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLE-----SLNKRHEELKNQVETFSE-SRVF 156 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhccch-HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-----------------ccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHh
Q 009047 91 SESAESIKELKVDLAEAKRRL-----------------GTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIA 153 (545)
Q Consensus 91 ~~Sq~~i~~lK~~L~~ak~~L-----------------~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIs 153 (545)
++-..++..+|..-..-...| ..++....+--.....+.+||+.| |..+..+|.-==--|.
T Consensus 157 ~el~~K~~~~k~~~e~Ll~~LgeFLeeHfPlp~~~~~~~Kkk~~~~e~~~~~~~l~eilE~L--mN~l~~~p~DpYv~i~ 234 (268)
T PF11802_consen 157 QELKTKIEKIKEYKEKLLSFLGEFLEEHFPLPDEQGNAKKKKKGEDEPSAQLITLREILEIL--MNKLLDSPHDPYVKID 234 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchhhhhhccccccchhhhHHHHHHHHH--HHHhcCCCCCCceecC
Q ss_pred ccCHHHHHHHHHHH
Q 009047 154 GKQYYAAVQLHAQS 167 (545)
Q Consensus 154 eK~yl~Av~LL~~s 167 (545)
...|+.++++|+++
T Consensus 235 ~~~WPpyie~LlR~ 248 (268)
T PF11802_consen 235 DSFWPPYIELLLRS 248 (268)
T ss_pred cccChHHHHHHHHc
No 119
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=24.54 E-value=7.5e+02 Score=25.11 Aligned_cols=157 Identities=9% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhCCCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 009047 25 VSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL 104 (545)
Q Consensus 25 ~eW~~~~fd~l~~vl~lLss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L 104 (545)
++|+ ......+..|+.+...+.+.+..+|..| .+...+++.|+..+..++.+-.. ..|
T Consensus 21 D~~F----------------~~~k~yi~~Le~~Lk~l~k~~~~lv~~r-kela~~~~efa~s~~~L~~~E~~-----~~l 78 (234)
T cd07664 21 DAWF----------------EEKQQQFENLDQQLRKLHASVESLVCHR-KELSANTAAFAKSAAMLGNSEDH-----TAL 78 (234)
T ss_pred cHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCccc-----chH
Q ss_pred HHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCC-------
Q 009047 105 AEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQ------- 177 (545)
Q Consensus 105 ~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~------- 177 (545)
..+=..|+...+.|+++ ...+-..+++..-+.|++-..+=.-|...+.++. .|.+-...+...+.+....
T Consensus 79 s~~l~~laev~~ki~~~-~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~--k~~~~~~~a~~~L~kkr~~~~Kl~~~ 155 (234)
T cd07664 79 SRALSQLAEVEEKIDQL-HQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRM--KCWQKWQDAQVTLQKKREAEAKLQYA 155 (234)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred -----------CcCccHHHHHHHHHhHHHHHHHHHHHHHH
Q 009047 178 -----------TVGALQDVRSELTKLRGVLFYKVLEDLHA 206 (545)
Q Consensus 178 -----------~I~AL~dLR~~L~~qe~~L~d~LiEELh~ 206 (545)
.|..+..=..+....-..+-+.+-.||.+
T Consensus 156 ~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~r 195 (234)
T cd07664 156 NKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGR 195 (234)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 120
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.33 E-value=5.5e+02 Score=28.70 Aligned_cols=101 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHH
Q 009047 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTL 128 (545)
Q Consensus 49 ~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~ 128 (545)
..+...+++....-.+=+.++..|+..-.+...+-..|++.|.+|+.. +..-..+..-..-|+........+
T Consensus 265 ~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~n--------kvvl~AyksGs~alK~il~~~~s~ 336 (439)
T KOG2911|consen 265 QALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTN--------KVVLQAYKSGSEALKAILAQGGST 336 (439)
T ss_pred HHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhccc--------HHHHHHHHHhHHHHHHHHhccCCh
Q ss_pred HHHHHHHHhHHHhhccHHHHHHHHhccCH
Q 009047 129 RHIISLLDQIEGIAKVPARIEKLIAGKQY 157 (545)
Q Consensus 129 ~~mL~iLd~Ie~L~~vP~kIe~lIseK~y 157 (545)
.++-++|++|++...-.++|++.|+.-.+
T Consensus 337 ekVed~Ldev~et~d~~~EV~~~la~~~~ 365 (439)
T KOG2911|consen 337 EKVEDVLDEVNETLDRQEEVEDALASYNV 365 (439)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhcCCC
No 121
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.27 E-value=7e+02 Score=24.64 Aligned_cols=95 Identities=9% Similarity=0.171 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Q 009047 51 VQILKDQNDIIEEVVDEVVHA----------YHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQ 120 (545)
Q Consensus 51 ~~~Le~~~~~l~~~L~~vV~e----------h~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~ 120 (545)
...|......+...|+++..+ |--+.++--++-+.+-..|..-.+.|+.+|..|..++.........|++
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~ 93 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443 3334555555558888888888899999999998888888777777775
Q ss_pred HHHHhhHHHHHHHHHHhHHHhhccH
Q 009047 121 LWYRSVTLRHIISLLDQIEGIAKVP 145 (545)
Q Consensus 121 L~~~s~~~~~mL~iLd~Ie~L~~vP 145 (545)
.-.+-...+.-++-|.++-.=+..|
T Consensus 94 ~~~el~k~~~~l~~L~~L~~dknL~ 118 (194)
T PF15619_consen 94 KDEELLKTKDELKHLKKLSEDKNLA 118 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCch
Confidence 5544444444444444443333444
No 122
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=24.00 E-value=1.2e+03 Score=27.11 Aligned_cols=135 Identities=7% Similarity=0.094 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHhccCcHHH
Q 009047 56 DQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA-----------------EAKRRLGTRNKQL 118 (545)
Q Consensus 56 ~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~-----------------~ak~~L~~r~~eL 118 (545)
+..+.++.+|++ +.+|-+++..+|.+|....+.+.++|.++..+...+. .++..+...+...
T Consensus 124 ~lS~~ledaL~a-aq~~ad~l~q~~~~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~l~~a~~av~~a~~~a~~a~~~~ 202 (593)
T PRK15374 124 QVSKEFQTALGE-AQEATDLYEASIKKTDTAKSVYDAAEKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEAL 202 (593)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555655654 5789999999999999999999999999998865542 2232222221111
Q ss_pred --------HHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHH----HHHHcccCCCCcCccHHHH
Q 009047 119 --------HQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQS----ALMLEREGLQTVGALQDVR 186 (545)
Q Consensus 119 --------~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s----~~ll~~~eL~~I~AL~dLR 186 (545)
+..-....+-+..+.+|.....=.+.-..++.+-.+.+++.+...|.-- .+++.+....++.+...|.
T Consensus 203 ~~~v~a~~~a~~~a~~ka~~~i~slt~~Q~~~~~~~~i~~~~~~~~~l~~~a~LT~LmA~l~eLi~~~s~e~lk~~~el~ 282 (593)
T PRK15374 203 DKATDATVKAGTDAKAKAEKADNILTKFQGTANAASQNQVSQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQNDLALF 282 (593)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhccHHhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhHHHhHHHHH
Confidence 1111112223333444433333333334466666777776666554322 2345554555555555555
Q ss_pred HHHHH
Q 009047 187 SELTK 191 (545)
Q Consensus 187 ~~L~~ 191 (545)
+.+.+
T Consensus 283 ~klse 287 (593)
T PRK15374 283 NALQE 287 (593)
T ss_pred HHHHH
Confidence 55543
No 123
>PRK14146 heat shock protein GrpE; Provisional
Probab=23.98 E-value=3.3e+02 Score=27.42 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHH-HHcccCCCCcCc
Q 009047 127 TLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSAL-MLEREGLQTVGA 181 (545)
Q Consensus 127 ~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~-ll~~~eL~~I~A 181 (545)
-.+.+|.++|.++........-+. .+.|..-++++...+. +|.+..+..|++
T Consensus 106 ~~~~lLpv~DnlerAl~~~~~~~~---~~~l~~Gv~mi~k~l~~~L~k~Gv~~i~~ 158 (215)
T PRK14146 106 LVSGFLNPIDNLERVGATQNQSEE---LKPFVEGVKMILKEFYSVLEKSNVIRFDP 158 (215)
T ss_pred HHHHHhhHHhHHHHHHhcccccch---hhHHHHHHHHHHHHHHHHHHHCcCeeeCC
Confidence 345566666666655443211010 1334444555444443 444444444444
No 124
>PRK03918 chromosome segregation protein; Provisional
Probab=23.84 E-value=1.3e+03 Score=27.47 Aligned_cols=6 Identities=17% Similarity=0.523 Sum_probs=2.3
Q ss_pred HHHHHH
Q 009047 320 QTMVEC 325 (545)
Q Consensus 320 ~~lles 325 (545)
..+++.
T Consensus 831 ~~l~~~ 836 (880)
T PRK03918 831 RKLVDI 836 (880)
T ss_pred HHHHHH
Confidence 333333
No 125
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=23.73 E-value=6.2e+02 Score=23.84 Aligned_cols=81 Identities=12% Similarity=0.220 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhH
Q 009047 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (545)
Q Consensus 48 E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~ 127 (545)
..+..+|=+.....-..+...|.+=.+...............+....+.+..+.+.|......+..-...+.++.....+
T Consensus 81 A~eir~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~ 160 (213)
T PF00015_consen 81 ADEIRKLAEQTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEE 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHH
Confidence 45556666555555666666666666666666666666666666666666666666666555554444555555544444
Q ss_pred H
Q 009047 128 L 128 (545)
Q Consensus 128 ~ 128 (545)
.
T Consensus 161 ~ 161 (213)
T PF00015_consen 161 Q 161 (213)
T ss_dssp H
T ss_pred H
Confidence 4
No 126
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=23.55 E-value=6.3e+02 Score=27.11 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHH
Q 009047 82 NYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAV 161 (545)
Q Consensus 82 sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av 161 (545)
-..-|...+.+.+.+|...|+.|+..-+ ++.+.-... .+-+..|+ +.|..+=+++|+|-.++..-.|.
T Consensus 84 ~~~~l~~~v~d~~rri~~~kerL~e~~e-------e~~~e~~~k---~~~v~~l~--e~I~~~l~~~E~LG~eG~Veeaq 151 (319)
T KOG0796|consen 84 ALEILERFVADVDRRIEKAKERLAETVE-------ERSEEAARK---AEKVHELE--EKIGKLLEKAEELGEEGNVEEAQ 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhhHHHHH---HHHHHHHH--HHHHHHHHHHHHHhhcCCHHHHH
Confidence 3445666788888999999999999833 111111111 11122222 44556678999999999998888
Q ss_pred HHHHHHHH
Q 009047 162 QLHAQSAL 169 (545)
Q Consensus 162 ~LL~~s~~ 169 (545)
.++.++-.
T Consensus 152 ~~~~e~E~ 159 (319)
T KOG0796|consen 152 KAMKEVEE 159 (319)
T ss_pred HHHHHHHH
Confidence 87665433
No 127
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=23.03 E-value=87 Score=30.05 Aligned_cols=38 Identities=29% Similarity=0.196 Sum_probs=30.6
Q ss_pred HhhCChHHHHHHHHhhhhHHHH--HHHHHHHHHHHHhhhc
Q 009047 327 CILGKVAAAGAIICQRLRPTIH--EIITSKIKAHAQLINS 364 (545)
Q Consensus 327 ~~LgKL~~Al~~i~qRl~~Elh--~lV~~ti~e~~~~~~~ 364 (545)
..|++-..+|..|.+|.|.||- .....||++++..+.+
T Consensus 92 ~el~~~A~~LK~iLSrIPdei~dR~~FL~tIK~IAsaIK~ 131 (154)
T PF06840_consen 92 QELNKRATALKRILSRIPDEISDRRTFLETIKEIASAIKK 131 (154)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHhhcchHHHHHHHHHHHHHHHH
Confidence 3477888999999999999994 5677788888876654
No 128
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=22.67 E-value=2e+02 Score=24.20 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 009047 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQN 82 (545)
Q Consensus 48 E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~s 82 (545)
+.++.++.+..+.+++++.-++.|.+|-|-+-|+.
T Consensus 14 ~~dfne~~kRLdeieekvef~~~Ev~Qr~GkkiGR 48 (75)
T COG4064 14 PDDFNEIHKRLDEIEEKVEFVNGEVYQRIGKKIGR 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 56777888888999999999999999999999886
No 129
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=22.63 E-value=8.2e+02 Score=24.82 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=22.5
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009047 69 VHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGT 113 (545)
Q Consensus 69 V~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~ 113 (545)
|.+|.+.+... +-...+...+.+..+....+++.|.+|...|..
T Consensus 11 l~~~~~~v~~~-~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~ 54 (296)
T PF13949_consen 11 LLEKSEEVRSE-GGIEKLEESLQELPELSQEVRSILDEIEEMLDE 54 (296)
T ss_dssp HHHHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 445555555555555555555555555555533
No 130
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=22.40 E-value=3.4e+02 Score=31.51 Aligned_cols=85 Identities=27% Similarity=0.365 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH-HHHHhhHHHHHHHHHHhHHHhhccHHHHHH
Q 009047 72 YHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQ-LWYRSVTLRHIISLLDQIEGIAKVPARIEK 150 (545)
Q Consensus 72 h~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~-L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~ 150 (545)
=-+.||++|++-+.-....+.+-.+|+.+-..=.++=..|. .+|.. ...-|-...++..-||+|| +..+|+.
T Consensus 253 iA~sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q~~aL~~L~---~qL~nnF~AISssI~dIy~RLd~le----AdaQVDR 325 (610)
T PF01601_consen 253 IANSFNKAIGNIQLGFTTTASALNKIQDVVNQQGQALNQLT---SQLSNNFGAISSSIQDIYNRLDQLE----ADAQVDR 325 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCHHHHHHHHHHHHHHHHH----HH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhHHHHHHHHHHHHHHh----hcccccc
Confidence 34689999999999888888888888877665555544432 11211 1122445566666777775 5777888
Q ss_pred HHhccCHHHHHHHHH
Q 009047 151 LIAGKQYYAAVQLHA 165 (545)
Q Consensus 151 lIseK~yl~Av~LL~ 165 (545)
||..+ +.|....+
T Consensus 326 LItGR--L~aLnafV 338 (610)
T PF01601_consen 326 LITGR--LAALNAFV 338 (610)
T ss_dssp ---------------
T ss_pred cccch--HHHHHHHH
Confidence 88776 45555544
No 131
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=22.30 E-value=2.7e+02 Score=25.93 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=9.5
Q ss_pred HHHHHHHHHhHHHhhcc
Q 009047 128 LRHIISLLDQIEGIAKV 144 (545)
Q Consensus 128 ~~~mL~iLd~Ie~L~~v 144 (545)
.+.+|.++|.++.....
T Consensus 64 ~~~ll~v~D~l~~a~~~ 80 (165)
T PF01025_consen 64 LKDLLPVLDNLERALEA 80 (165)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44466666666555543
No 132
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=22.22 E-value=78 Score=26.03 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHcccC
Q 009047 146 ARIEKLIAGKQYYAAVQLHAQSALMLEREG 175 (545)
Q Consensus 146 ~kIe~lIseK~yl~Av~LL~~s~~ll~~~e 175 (545)
.-|+..+..++|-.|.+++..+++++...+
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le~~e 41 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLEERE 41 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Confidence 446777889999999999999999888754
No 133
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=22.12 E-value=2.7e+02 Score=29.49 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009047 83 YSQILRLFSESAESIKELKVDLAEAKRR 110 (545)
Q Consensus 83 y~~I~~~I~~Sq~~i~~lK~~L~~ak~~ 110 (545)
|+.|..+|...++++..|.+++..|+..
T Consensus 38 F~rI~~Rv~~~~~~l~~i~~Ri~~~qaK 65 (297)
T PF11945_consen 38 FSRISARVERNRERLQAIQQRIEVAQAK 65 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666777777776666666665
No 134
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=22.06 E-value=1.3e+03 Score=26.84 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHH
Q 009047 60 IIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD 136 (545)
Q Consensus 60 ~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd 136 (545)
.+++.+=..=.+-=++|......+..+.+.+..-++.+..+++.|..++..-..--.+..+|..+....+.=-++|+
T Consensus 24 ~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~ 100 (618)
T PF06419_consen 24 DIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLD 100 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443333333334455555555566666666666666666666666655443333444444444443333333333
No 135
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=21.74 E-value=6e+02 Score=23.34 Aligned_cols=105 Identities=11% Similarity=0.209 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccCcH
Q 009047 47 REGEVQILKDQNDIIEEVVDEVVHAYHT----GFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRL------GTRNK 116 (545)
Q Consensus 47 ~E~~~~~Le~~~~~l~~~L~~vV~eh~q----~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L------~~r~~ 116 (545)
++....+|+.....+...++..+..... .|-+....+.+....+.....++..+...+..+.... ..-..
T Consensus 13 L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~ 92 (171)
T PF03357_consen 13 LEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSK 92 (171)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555665556666666666654432 3444555666667777777777777777777666543 23345
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHH
Q 009047 117 QLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLI 152 (545)
Q Consensus 117 eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lI 152 (545)
.|+.+. ..+...++-++++++++...--+.+...|
T Consensus 93 ~Lk~~~-~~i~~~~v~~~~d~~~e~~e~~~ei~~~l 127 (171)
T PF03357_consen 93 ALKKIN-KQINLDKVEKLMDDFQEEMEDQDEISEAL 127 (171)
T ss_dssp HHHHHH-HSTTSCCHHHHHHHHHHHHHHHTS-----
T ss_pred HHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555552 23444455555555555444444333333
No 136
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=20.97 E-value=6.9e+02 Score=23.58 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009047 82 NYSQILRLFSESAESIKELKVDLAEAKRRLGT 113 (545)
Q Consensus 82 sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~ 113 (545)
....+...++.-.+....||..|..|...+.|
T Consensus 65 ~~~~~k~~i~Sl~~~f~~lk~~l~~C~~~~~C 96 (137)
T smart00188 65 HGPDIKEHVNSLGEKLKTLRLRLRRCHRFLPC 96 (137)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHCccccCc
Confidence 34456778888888899999999999999999
No 137
>PRK11281 hypothetical protein; Provisional
Probab=20.81 E-value=1.5e+03 Score=28.50 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHcccCCCCcCccHHH---HHHHHHhHHHHHHHHHHHHHHhHhcCCC
Q 009047 157 YYAAVQLHAQSALMLEREGLQTVGALQDV---RSELTKLRGVLFYKVLEDLHAHLYNRGE 213 (545)
Q Consensus 157 yl~Av~LL~~s~~ll~~~eL~~I~AL~dL---R~~L~~qe~~L~d~LiEELh~~lYlK~~ 213 (545)
-++|-..+.++..-.++.+|.+-..+++| |.++...+....+..++.|++.+..|..
T Consensus 196 ~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 196 LLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555577766666554 5567777788888889999999988643
No 138
>PRK14163 heat shock protein GrpE; Provisional
Probab=20.60 E-value=8.9e+02 Score=24.49 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHH-HHcccCCCCcCcc
Q 009047 125 SVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSAL-MLEREGLQTVGAL 182 (545)
Q Consensus 125 s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~-ll~~~eL~~I~AL 182 (545)
..-.+.+|.+||.++..... ..+..-++++...+. .|.+..+..|+++
T Consensus 90 ~~~~~~LLpVlDnLerAl~~----------~~l~~Gv~mi~k~l~~~L~k~Gv~~I~~~ 138 (214)
T PRK14163 90 ANLLSELLPVLDDVGRAREH----------GELVGGFKSVAESLETTVAKLGLQQFGKE 138 (214)
T ss_pred HHHHHHHhhhHhHHHHHHhc----------hhHHHHHHHHHHHHHHHHHHCCCEEeCCC
Confidence 33456677777777766443 247777777777666 6777777777665
No 139
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=20.03 E-value=6.7e+02 Score=22.86 Aligned_cols=68 Identities=19% Similarity=0.108 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 009047 47 REGEVQILKDQNDIIEEV---VDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTR 114 (545)
Q Consensus 47 ~E~~~~~Le~~~~~l~~~---L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r 114 (545)
.+..++.|...+..++-. ++-++..+...--+-=..+..|...|...+..|..+|..|..||.....+
T Consensus 44 ~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k 114 (139)
T PF05615_consen 44 SQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNK 114 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454444444333 33344443333333344556677788889999999999999998775443
Done!