Query 009047
Match_columns 545
No_of_seqs 156 out of 186
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:37:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 94.5 0.085 2.9E-06 51.8 7.9 70 136-205 13-86 (235)
2 3ghg_A Fibrinogen alpha chain; 46.7 1.5E+02 0.0053 32.2 12.0 39 63-101 67-105 (562)
3 3iyk_A VP5; icosahedral virus; 42.1 3.1E+02 0.011 29.6 13.4 66 59-124 109-175 (526)
4 2z0v_A SH3-containing GRB2-lik 40.6 2.5E+02 0.0084 26.7 16.6 81 45-125 92-174 (240)
5 2bez_C E2 glycoprotein; coiled 39.9 68 0.0023 26.1 6.1 35 64-98 34-72 (77)
6 1deq_A Fibrinogen (alpha chain 30.9 1.3E+02 0.0044 31.5 8.1 25 142-166 166-190 (390)
7 2d2s_A Exocyst complex compone 30.5 3.4E+02 0.012 25.9 10.9 70 142-211 92-163 (235)
8 3ghg_A Fibrinogen alpha chain; 30.1 3.3E+02 0.011 29.7 11.3 6 24-29 30-35 (562)
9 4akg_A Glutathione S-transfera 27.0 2.2E+02 0.0074 37.2 10.8 182 11-208 218-405 (2695)
10 3ajw_A Flagellar FLIJ protein; 26.6 3.1E+02 0.01 23.6 10.0 82 49-130 26-116 (150)
11 4emc_A Monopolin complex subun 26.0 1.9E+02 0.0065 27.4 7.7 48 53-111 10-57 (190)
12 1zww_A SH3-containing GRB2-lik 24.9 4.6E+02 0.016 25.0 18.1 84 46-129 109-194 (256)
13 1deq_A Fibrinogen (alpha chain 24.4 6.2E+02 0.021 26.4 13.7 11 184-194 177-187 (390)
14 3qww_A SET and MYND domain-con 22.7 6.5E+02 0.022 26.0 12.8 85 67-173 330-414 (433)
15 4err_A Autotransporter adhesin 22.7 85 0.0029 26.3 4.1 19 136-154 42-60 (90)
16 1m1j_C Fibrinogen gamma chain; 22.6 5.5E+02 0.019 26.9 11.4 43 65-107 25-67 (409)
17 3htk_A Structural maintenance 22.6 2.4E+02 0.0081 20.9 7.8 36 68-103 20-55 (60)
18 3mq9_A Bone marrow stromal ant 22.5 6.4E+02 0.022 25.8 12.9 38 81-118 397-434 (471)
19 1cii_A Colicin IA; bacteriocin 21.8 6.2E+02 0.021 27.3 11.3 13 32-44 316-328 (602)
20 1zva_A E2 glycoprotein; membra 21.7 1.8E+02 0.0061 23.6 5.6 33 63-95 3-39 (77)
21 3oja_B Anopheles plasmodium-re 20.9 3.4E+02 0.012 28.7 9.7 76 45-121 498-577 (597)
22 3vkg_A Dynein heavy chain, cyt 20.4 1E+03 0.035 31.7 15.1 52 66-117 1905-1956(3245)
23 1zw0_A Type III secretion prot 20.1 3.2E+02 0.011 21.5 8.5 48 92-139 13-62 (66)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=94.47 E-value=0.085 Score=51.84 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=57.7
Q ss_pred HhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCC----CCcCccHHHHHHHHHhHHHHHHHHHHHHH
Q 009047 136 DQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGL----QTVGALQDVRSELTKLRGVLFYKVLEDLH 205 (545)
Q Consensus 136 d~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL----~~I~AL~dLR~~L~~qe~~L~d~LiEELh 205 (545)
+.+..+...|+.|+-+|++++|.+|++++.++-..+.+-.- .+..++..++..+.+++..|.+.|++||.
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~ 86 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL 86 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778999999999999999999999999998865221 12456778999999999999999999983
No 2
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.72 E-value=1.5e+02 Score=32.21 Aligned_cols=39 Identities=8% Similarity=0.156 Sum_probs=18.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 009047 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELK 101 (545)
Q Consensus 63 ~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK 101 (545)
..|+..|.++.+.++.+=.-|..+.+.+..-+.+..+..
T Consensus 67 NELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNd 105 (562)
T 3ghg_A 67 NKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRD 105 (562)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccc
Confidence 344445555545555444445555555544444444333
No 3
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=42.13 E-value=3.1e+02 Score=29.62 Aligned_cols=66 Identities=8% Similarity=0.039 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Q 009047 59 DIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESA-ESIKELKVDLAEAKRRLGTRNKQLHQLWYR 124 (545)
Q Consensus 59 ~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq-~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~ 124 (545)
+.+-.+.+..|-+.+..+-..|..|.+....+.+.. +++..|.+.|......+...+..|.+|...
T Consensus 109 d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~A 175 (526)
T 3iyk_A 109 ELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATA 175 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334445555566666666666777777776776644 478888888888888888888888777643
No 4
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=40.57 E-value=2.5e+02 Score=26.73 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=61.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHH
Q 009047 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-QILRLFSESAESIKELKVDLAEAKRRLGTR-NKQLHQLW 122 (545)
Q Consensus 45 ~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~-~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r-~~eL~~L~ 122 (545)
+.....+.++-+....+..........-.+.|+.-+.+|- .-+..|..++.++...|-.+..||..+... ..+|....
T Consensus 92 s~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~k~~eeEl~~A~ 171 (240)
T 2z0v_A 92 STFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAV 171 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3456666777777777777777788888888999999996 677889999999999999999999887532 44554444
Q ss_pred HHh
Q 009047 123 YRS 125 (545)
Q Consensus 123 ~~s 125 (545)
..-
T Consensus 172 ~~f 174 (240)
T 2z0v_A 172 EKF 174 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 5
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=39.94 E-value=68 Score=26.13 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=19.4
Q ss_pred HHHHHHHHhHHHHHHHHH----hHHHHHHHHHHHHHHHH
Q 009047 64 VVDEVVHAYHTGFNKAIQ----NYSQILRLFSESAESIK 98 (545)
Q Consensus 64 ~L~~vV~eh~q~FN~sI~----sy~~I~~~I~~Sq~~i~ 98 (545)
+++.||+.|.+..+.-+. +|+.|.++|++-=.|+.
T Consensus 34 kiQdVVN~q~~aL~~L~~qL~~NFgAISssi~dIy~RLd 72 (77)
T 2bez_C 34 KLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLD 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 456667777666666654 34555555544444443
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.89 E-value=1.3e+02 Score=31.47 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=12.6
Q ss_pred hccHHHHHHHHhccCHHHHHHHHHH
Q 009047 142 AKVPARIEKLIAGKQYYAAVQLHAQ 166 (545)
Q Consensus 142 ~~vP~kIe~lIseK~yl~Av~LL~~ 166 (545)
..++-.++--|.-+.|..=.+.|.+
T Consensus 166 ~sC~~~l~~~vD~e~ye~qqKQL~q 190 (390)
T 1deq_A 166 GSCSRALEHKVDLEDYKNQQKQLEQ 190 (390)
T ss_pred cccchhhhhhccHHHHHHHHHHHHh
Confidence 3445555555555555544444443
No 7
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.48 E-value=3.4e+02 Score=25.95 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=50.4
Q ss_pred hccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHH--hHhcC
Q 009047 142 AKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHA--HLYNR 211 (545)
Q Consensus 142 ~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~--~lYlK 211 (545)
.++-.-+..|+.=++-..|.+++.++....=+..+.+++.-.++-.|+.......|.+|.+-... .+|-.
T Consensus 92 ~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~Ls~i~Fs~I~~t~~~f~~~F~~ 163 (235)
T 2d2s_A 92 VHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKE 163 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444455555558889999999999985555578888888999999999999999888765433 24544
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.10 E-value=3.3e+02 Score=29.70 Aligned_cols=6 Identities=17% Similarity=0.684 Sum_probs=3.9
Q ss_pred HhhhCC
Q 009047 24 EVSWVA 29 (545)
Q Consensus 24 ~~eW~~ 29 (545)
+.+|++
T Consensus 30 e~~WPf 35 (562)
T 3ghg_A 30 DSDWPF 35 (562)
T ss_dssp CCCCCB
T ss_pred cCCCCc
Confidence 566775
No 9
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=26.98 E-value=2.2e+02 Score=37.18 Aligned_cols=182 Identities=13% Similarity=0.151 Sum_probs=91.8
Q ss_pred CChHHHHHHHHHhHhhhCCCCCCchhHHH--hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 009047 11 PEKAYLREELARIEVSWVAPRFDSLPHVV--HILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILR 88 (545)
Q Consensus 11 ~d~~~l~evL~~I~~eW~~~~fd~l~~vl--~lLss~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~ 88 (545)
.....+++.|+.|+..|....|+-.++.= .+|. +.+.-...|++....++.... +.|+..|-..|....+-+.
T Consensus 218 skE~~iE~~L~~i~~~W~~~~f~~~~~~~~~~~l~--~~d~i~~~l~d~~~~l~~m~~---s~~~~~f~~~~~~w~~~L~ 292 (2695)
T 4akg_A 218 SDEFVIEKSLNRIKKFWKEAQYEVIEHSSGLKLVR--EWDVLEQACKEDLEELVSMKA---SNYYKIFEQDCLDLESKLT 292 (2695)
T ss_dssp ---CHHHHHHHHHHHHHTSCCCEEEECSSSCEEEE--CTHHHHHHHHHHHHHHHHTSS---CSTTTTTHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHhhceEEEEEEecCCeEEEC--CHHHHHHHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHH
Confidence 34456899999999999998888776631 1221 233444555555444332221 3566667777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHh-HHHhhccHHHHHHHHhccCHHHHHHHHHHH
Q 009047 89 LFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHAQS 167 (545)
Q Consensus 89 ~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~-Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s 167 (545)
.+++.-+....+...-.--...+....+--++|=.++..+..+=..... |..+.+.|.-++.. .....++ .|.+.
T Consensus 293 ~~~~~l~~w~~vQ~~W~yLe~iF~~s~di~~qLp~e~~~F~~vd~~~~~im~~~~~~~~v~~~~-~~~~~~~---~L~~~ 368 (2695)
T 4akg_A 293 KLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVI-HIPNFDT---TLKLT 368 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCCSGGGG-GSTTHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeec-ccccHHH---HHHHH
Confidence 6666666655555554444444433333334455666655554433222 23333333322221 1222222 22333
Q ss_pred HHHHcccCCCCcCccHHHHHHHHHhHHHH---HHHHHHHHHHhH
Q 009047 168 ALMLEREGLQTVGALQDVRSELTKLRGVL---FYKVLEDLHAHL 208 (545)
Q Consensus 168 ~~ll~~~eL~~I~AL~dLR~~L~~qe~~L---~d~LiEELh~~l 208 (545)
...|+. +-+.|-.||+.++..+ |=.==+||-++|
T Consensus 369 ~~~Le~-------iqk~L~~yLe~KR~~FPRFyFlsd~eLLeiL 405 (2695)
T 4akg_A 369 IDSLKM-------IKSSLSTFLERQRRQFPRFYFLGNDDLLKII 405 (2695)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHSTTHHHHCHHHHHHHH
T ss_pred HHHHHH-------HHHHHHHHHHHHHhhCCcceecCcHHHHHHH
Confidence 333332 2335666777777743 333345555544
No 10
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=26.62 E-value=3.1e+02 Score=23.56 Aligned_cols=82 Identities=11% Similarity=0.180 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHH
Q 009047 49 GEVQILKDQNDIIEEVVDEVVH---AYHTGFNK------AIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLH 119 (545)
Q Consensus 49 ~~~~~Le~~~~~l~~~L~~vV~---eh~q~FN~------sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~ 119 (545)
..+......+......|..+.. +|.+.|.. ++..+......|..-...|...+..|..+...+...+..|.
T Consensus 26 ~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~ 105 (150)
T 3ajw_A 26 RLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWR 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555543 44444432 33334444444555566666667777777666655555554
Q ss_pred HHHHHhhHHHH
Q 009047 120 QLWYRSVTLRH 130 (545)
Q Consensus 120 ~L~~~s~~~~~ 130 (545)
+-..+...+..
T Consensus 106 ~a~~~~k~~e~ 116 (150)
T 3ajw_A 106 EKKQRLQAWQT 116 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 11
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.02 E-value=1.9e+02 Score=27.36 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009047 53 ILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRL 111 (545)
Q Consensus 53 ~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L 111 (545)
.++++.+.-+..+..+|+++ ..+...+..-...|..+++.|+..+...
T Consensus 10 ~~q~ql~~ad~LV~~L~~En-----------~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNEN-----------FVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ----------CHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444455555566666665 3455556666777778888877777765
No 12
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=24.94 E-value=4.6e+02 Score=25.01 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=62.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHH
Q 009047 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQ-ILRLFSESAESIKELKVDLAEAKRRLGTR-NKQLHQLWY 123 (545)
Q Consensus 46 ~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~-I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r-~~eL~~L~~ 123 (545)
+....+..+.+....++.........-.+.|+.-+..|.. ....|..++.++...|-.+..||..+... ..+|.....
T Consensus 109 ~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~k~~eeEle~A~~ 188 (256)
T 1zww_A 109 NFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKIPDEELRQALE 188 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4456677777777788888878777778889999999854 88889999999999999999999887542 445554444
Q ss_pred HhhHHH
Q 009047 124 RSVTLR 129 (545)
Q Consensus 124 ~s~~~~ 129 (545)
+-..++
T Consensus 189 ~fe~~~ 194 (256)
T 1zww_A 189 KFDESK 194 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 13
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.42 E-value=6.2e+02 Score=26.39 Aligned_cols=11 Identities=9% Similarity=0.145 Sum_probs=5.6
Q ss_pred HHHHHHHHhHH
Q 009047 184 DVRSELTKLRG 194 (545)
Q Consensus 184 dLR~~L~~qe~ 194 (545)
|++.|-..|++
T Consensus 177 D~e~ye~qqKQ 187 (390)
T 1deq_A 177 DLEDYKNQQKQ 187 (390)
T ss_pred cHHHHHHHHHH
Confidence 55555554444
No 14
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=22.74 E-value=6.5e+02 Score=25.99 Aligned_cols=85 Identities=6% Similarity=0.020 Sum_probs=53.7
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHH
Q 009047 67 EVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPA 146 (545)
Q Consensus 67 ~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~ 146 (545)
.+...+|-....++.+-..+......-.+-..-.++.|+--+..++...+++-..+ ..+
T Consensus 330 ~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l-------------~nL-------- 388 (433)
T 3qww_A 330 SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW-------------LKL-------- 388 (433)
T ss_dssp TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH-------------HHH--------
T ss_pred CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH-------------HHH--------
Confidence 34455566666666666666655555556666666666666666666655443222 111
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHcc
Q 009047 147 RIEKLIAGKQYYAAVQLHAQSALMLER 173 (545)
Q Consensus 147 kIe~lIseK~yl~Av~LL~~s~~ll~~ 173 (545)
=..+...++|.+|..++.+++.+...
T Consensus 389 -a~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 389 -GRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 22355788999999999999998765
No 15
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=22.69 E-value=85 Score=26.33 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.0
Q ss_pred HhHHHhhccHHHHHHHHhc
Q 009047 136 DQIEGIAKVPARIEKLIAG 154 (545)
Q Consensus 136 d~Ie~L~~vP~kIe~lIse 154 (545)
+.++++.++|.+|+.|+.+
T Consensus 42 ~~~e~l~~L~~kie~Yl~~ 60 (90)
T 4err_A 42 DQIAASFELNKKINDYIAE 60 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5688899999999998866
No 16
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.60 E-value=5.5e+02 Score=26.87 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=32.5
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009047 65 VDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEA 107 (545)
Q Consensus 65 L~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~a 107 (545)
|+..+..+...+.+.|...-.++..++.+-+.+..+++.+..+
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555556666777777788888888888888888888888
No 17
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.60 E-value=2.4e+02 Score=20.90 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=18.4
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 009047 68 VVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVD 103 (545)
Q Consensus 68 vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~ 103 (545)
.+..+-..|...-..|-.+...+...++.|..++..
T Consensus 20 ~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 20 KCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554443
No 18
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.54 E-value=6.4e+02 Score=25.85 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH
Q 009047 81 QNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL 118 (545)
Q Consensus 81 ~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL 118 (545)
...+-|+..|++.|....+++..-..|+.-...-.+.|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASL 434 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Confidence 44556777888888888888888888876655544444
No 19
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=21.79 E-value=6.2e+02 Score=27.28 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=7.9
Q ss_pred CCchhHHHhhcCC
Q 009047 32 FDSLPHVVHILTS 44 (545)
Q Consensus 32 fd~l~~vl~lLss 44 (545)
-.|++|--.+|..
T Consensus 316 ~~~~~~~~~~~~~ 328 (602)
T 1cii_A 316 HSGLDYKRNILND 328 (602)
T ss_dssp SCHHHHHHHTSCC
T ss_pred ccchhhhhhhhcC
Confidence 3566666677743
No 20
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=21.73 E-value=1.8e+02 Score=23.62 Aligned_cols=33 Identities=12% Similarity=0.324 Sum_probs=23.0
Q ss_pred HHHHHHHHHhHHHHHHHHHh----HHHHHHHHHHHHH
Q 009047 63 EVVDEVVHAYHTGFNKAIQN----YSQILRLFSESAE 95 (545)
Q Consensus 63 ~~L~~vV~eh~q~FN~sI~s----y~~I~~~I~~Sq~ 95 (545)
.+++.|||.|.+..+.-+.. |+.|.++|++-=.
T Consensus 3 ~kiQdVVN~q~~aL~~L~~qL~~NFgAISSsi~dIy~ 39 (77)
T 1zva_A 3 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDISG 39 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 46889999999999988764 5555555544433
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.89 E-value=3.4e+02 Score=28.73 Aligned_cols=76 Identities=8% Similarity=0.045 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Q 009047 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAI----QNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQ 120 (545)
Q Consensus 45 ~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI----~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~eL~~ 120 (545)
.+.+.....+++..+.+....+....+. +.|-+.+ ..|..+...+.+-+.++...|+.+.+.+..+...+.+|++
T Consensus 498 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 498 DGLARSSDNLNKVFTHLKERQAFKLRET-QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhhhhhhHHHH-HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 009047 121 L 121 (545)
Q Consensus 121 L 121 (545)
|
T Consensus 577 l 577 (597)
T 3oja_B 577 L 577 (597)
T ss_dssp H
T ss_pred H
No 22
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.38 E-value=1e+03 Score=31.73 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=38.0
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHH
Q 009047 66 DEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQ 117 (545)
Q Consensus 66 ~~vV~eh~q~FN~sI~sy~~I~~~I~~Sq~~i~~lK~~L~~ak~~L~~r~~e 117 (545)
..+..++.+.....+..|..=+..|.++.+.|..||+.|+.-+..|..+..+
T Consensus 1905 ~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~e 1956 (3245)
T 3vkg_A 1905 VLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQ 1956 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666777777777888888888888888888887777665443
No 23
>1zw0_A Type III secretion protein; chaperone, translocation, export; 1.80A {Yersinia pestis} PDB: 2p58_A
Probab=20.14 E-value=3.2e+02 Score=21.52 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHhhHHHHHHHHHHhHH
Q 009047 92 ESAESIKELKVDLAEAKRRLG--TRNKQLHQLWYRSVTLRHIISLLDQIE 139 (545)
Q Consensus 92 ~Sq~~i~~lK~~L~~ak~~L~--~r~~eL~~L~~~s~~~~~mL~iLd~Ie 139 (545)
..++-..+++..|..+|..|. |.-.+-+.+-...--|.--+.+++.++
T Consensus 13 ~~~~i~~~l~qAl~~vKRqL~~G~~pqqYQ~~q~q~~A~eaal~Iie~~~ 62 (66)
T 1zw0_A 13 TVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVA 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556677888888888874 444555555555555666667766665
Done!