Query 009048
Match_columns 545
No_of_seqs 387 out of 2893
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 19:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0352 ATP-dependent DNA heli 100.0 1.8E-92 4E-97 691.0 35.4 429 22-453 3-447 (641)
2 COG0514 RecQ Superfamily II DN 100.0 1.2E-88 2.7E-93 713.2 42.5 401 24-441 3-403 (590)
3 PLN03137 ATP-dependent DNA hel 100.0 7.4E-82 1.6E-86 695.9 47.4 421 19-441 441-870 (1195)
4 KOG0351 ATP-dependent DNA heli 100.0 5.9E-83 1.3E-87 705.9 32.9 504 23-537 249-757 (941)
5 KOG0353 ATP-dependent DNA heli 100.0 1.4E-78 3.1E-83 585.5 26.8 406 18-438 74-526 (695)
6 PRK11057 ATP-dependent DNA hel 100.0 1.1E-73 2.3E-78 626.7 49.2 403 19-441 6-408 (607)
7 TIGR01389 recQ ATP-dependent D 100.0 1.3E-73 2.8E-78 627.5 47.0 395 27-440 2-396 (591)
8 TIGR00614 recQ_fam ATP-depende 100.0 2.6E-73 5.6E-78 608.3 46.6 394 29-438 2-402 (470)
9 PRK04837 ATP-dependent RNA hel 100.0 5.7E-52 1.2E-56 439.2 35.6 342 15-375 8-372 (423)
10 KOG0331 ATP-dependent RNA heli 100.0 6E-52 1.3E-56 428.5 30.7 344 14-377 90-460 (519)
11 PTZ00110 helicase; Provisional 100.0 6.3E-51 1.4E-55 441.1 38.4 345 14-376 129-495 (545)
12 KOG0330 ATP-dependent RNA heli 100.0 1.2E-51 2.7E-56 401.0 28.2 353 8-381 54-423 (476)
13 PRK11776 ATP-dependent RNA hel 100.0 1.2E-50 2.6E-55 433.7 37.4 344 14-376 3-360 (460)
14 PRK04537 ATP-dependent RNA hel 100.0 1.2E-50 2.6E-55 440.5 36.6 343 16-376 10-375 (572)
15 PRK10590 ATP-dependent RNA hel 100.0 1.3E-50 2.9E-55 431.9 36.3 342 16-376 2-363 (456)
16 PRK11192 ATP-dependent RNA hel 100.0 3.6E-50 7.7E-55 427.2 38.6 343 16-374 2-361 (434)
17 PRK01297 ATP-dependent RNA hel 100.0 8.4E-50 1.8E-54 428.4 37.4 348 13-375 85-452 (475)
18 PLN00206 DEAD-box ATP-dependen 100.0 6.3E-50 1.4E-54 432.0 36.3 344 13-375 119-485 (518)
19 PRK11634 ATP-dependent RNA hel 100.0 4.4E-49 9.6E-54 430.6 40.8 345 15-378 6-365 (629)
20 COG0513 SrmB Superfamily II DN 100.0 2.2E-49 4.9E-54 425.2 36.0 343 15-377 29-393 (513)
21 PTZ00424 helicase 45; Provisio 100.0 4.7E-48 1E-52 407.4 36.5 345 15-376 28-385 (401)
22 KOG0333 U5 snRNP-like RNA heli 100.0 3.6E-48 7.7E-53 388.9 29.7 340 13-370 243-629 (673)
23 TIGR03817 DECH_helic helicase/ 100.0 4.9E-47 1.1E-51 422.1 34.3 339 20-371 19-394 (742)
24 KOG0345 ATP-dependent RNA heli 100.0 1E-46 2.3E-51 374.4 30.1 334 21-376 12-375 (567)
25 KOG0328 Predicted ATP-dependen 100.0 4.8E-47 1E-51 354.5 25.2 347 11-377 23-385 (400)
26 KOG0340 ATP-dependent RNA heli 100.0 1.1E-46 2.3E-51 362.6 26.6 352 13-381 5-377 (442)
27 KOG0338 ATP-dependent RNA heli 100.0 1.3E-46 2.7E-51 376.3 26.4 342 15-377 181-545 (691)
28 KOG0342 ATP-dependent RNA heli 100.0 6.7E-46 1.5E-50 371.2 29.1 343 12-374 79-446 (543)
29 KOG0348 ATP-dependent RNA heli 100.0 5.4E-46 1.2E-50 373.7 27.2 351 14-376 135-565 (708)
30 KOG0343 RNA Helicase [RNA proc 100.0 9.2E-46 2E-50 373.1 27.9 342 14-376 68-434 (758)
31 KOG0336 ATP-dependent RNA heli 100.0 1.2E-45 2.6E-50 360.3 24.8 336 20-375 225-582 (629)
32 KOG0346 RNA helicase [RNA proc 100.0 4.8E-44 1E-48 352.4 24.1 348 7-376 11-424 (569)
33 KOG0347 RNA helicase [RNA proc 100.0 6E-44 1.3E-48 360.0 23.3 348 15-382 181-587 (731)
34 KOG0326 ATP-dependent RNA heli 100.0 2.8E-44 6.1E-49 341.1 16.2 344 13-379 83-443 (459)
35 KOG0335 ATP-dependent RNA heli 100.0 4.6E-43 1E-47 356.6 24.5 339 16-371 75-450 (482)
36 TIGR00580 mfd transcription-re 100.0 8.4E-41 1.8E-45 375.7 39.2 321 19-365 433-770 (926)
37 PRK13767 ATP-dependent helicas 100.0 2.1E-40 4.6E-45 375.9 39.2 324 22-363 18-396 (876)
38 PRK14701 reverse gyrase; Provi 100.0 6.1E-41 1.3E-45 392.4 32.4 335 23-376 65-467 (1638)
39 KOG0341 DEAD-box protein abstr 100.0 1.5E-42 3.1E-47 336.7 15.6 332 14-366 169-529 (610)
40 PRK10917 ATP-dependent DNA hel 100.0 7.2E-40 1.6E-44 363.3 38.8 317 22-363 246-587 (681)
41 PRK02362 ski2-like helicase; P 100.0 1.6E-40 3.4E-45 373.4 33.4 330 17-366 3-398 (737)
42 KOG0332 ATP-dependent RNA heli 100.0 1.9E-40 4.1E-45 321.2 25.4 352 7-377 82-456 (477)
43 KOG0339 ATP-dependent RNA heli 100.0 5.5E-40 1.2E-44 328.3 28.6 347 13-378 221-588 (731)
44 TIGR00643 recG ATP-dependent D 100.0 5.2E-39 1.1E-43 354.2 38.8 316 22-362 220-563 (630)
45 PRK10689 transcription-repair 100.0 4.3E-39 9.3E-44 369.1 38.9 320 19-364 582-918 (1147)
46 COG1201 Lhr Lhr-like helicases 100.0 2.2E-39 4.8E-44 352.8 32.0 322 21-364 7-361 (814)
47 KOG0350 DEAD-box ATP-dependent 100.0 2E-39 4.3E-44 324.5 22.3 335 30-379 152-554 (620)
48 KOG0344 ATP-dependent RNA heli 100.0 4.7E-39 1E-43 329.2 25.3 340 20-375 141-505 (593)
49 PRK00254 ski2-like helicase; P 100.0 2.5E-38 5.4E-43 354.7 33.2 331 17-374 3-398 (720)
50 KOG0334 RNA helicase [RNA proc 100.0 1.1E-38 2.5E-43 345.3 26.6 350 13-376 363-731 (997)
51 PRK01172 ski2-like helicase; P 100.0 3.8E-37 8.3E-42 343.6 33.2 334 17-375 3-389 (674)
52 KOG0327 Translation initiation 100.0 6.5E-38 1.4E-42 306.4 21.9 342 14-377 25-382 (397)
53 KOG4284 DEAD box protein [Tran 100.0 2.8E-37 6E-42 316.3 22.1 341 13-373 23-388 (980)
54 PRK09751 putative ATP-dependen 100.0 2.4E-36 5.2E-41 348.1 29.2 291 58-363 1-383 (1490)
55 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2E-35 4.3E-40 323.7 30.6 317 25-362 3-388 (844)
56 PRK09401 reverse gyrase; Revie 100.0 3E-35 6.6E-40 338.2 32.2 304 24-350 67-429 (1176)
57 TIGR01587 cas3_core CRISPR-ass 100.0 1.8E-35 3.9E-40 306.9 26.0 302 55-365 1-336 (358)
58 TIGR03158 cas3_cyano CRISPR-as 100.0 1.3E-34 2.8E-39 298.7 29.7 297 42-350 1-357 (357)
59 KOG0337 ATP-dependent RNA heli 100.0 3.2E-36 6.9E-41 296.0 16.5 341 14-373 20-376 (529)
60 COG1202 Superfamily II helicas 100.0 1E-34 2.2E-39 294.7 23.8 332 18-365 197-553 (830)
61 PHA02558 uvsW UvsW helicase; P 100.0 4.6E-34 1E-38 307.4 28.8 298 37-366 113-453 (501)
62 PHA02653 RNA helicase NPH-II; 100.0 1.4E-33 3E-38 307.6 32.0 297 42-368 168-517 (675)
63 PRK12898 secA preprotein trans 100.0 6.9E-33 1.5E-37 297.7 33.8 325 27-368 93-589 (656)
64 COG1111 MPH1 ERCC4-like helica 100.0 6.3E-33 1.4E-37 280.3 29.3 315 36-368 13-484 (542)
65 COG1205 Distinct helicase fami 100.0 3.3E-33 7E-38 312.6 29.6 333 22-364 55-421 (851)
66 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.2E-32 4.8E-37 304.8 30.3 304 43-370 7-341 (819)
67 PRK09200 preprotein translocas 100.0 7.3E-32 1.6E-36 295.6 33.7 325 26-367 67-543 (790)
68 PRK11664 ATP-dependent RNA hel 100.0 2.5E-32 5.4E-37 305.1 29.5 298 44-369 11-343 (812)
69 PRK13766 Hef nuclease; Provisi 100.0 1.7E-31 3.7E-36 303.4 34.7 312 37-366 14-480 (773)
70 TIGR03714 secA2 accessory Sec 100.0 2.3E-31 5E-36 289.0 31.6 323 27-367 60-539 (762)
71 TIGR00603 rad25 DNA repair hel 100.0 2.2E-31 4.8E-36 289.2 28.7 302 38-366 255-608 (732)
72 TIGR01054 rgy reverse gyrase. 100.0 5.9E-31 1.3E-35 303.3 33.0 290 24-337 65-409 (1171)
73 PRK05580 primosome assembly pr 100.0 2.7E-30 5.9E-35 285.9 34.9 314 38-369 144-553 (679)
74 COG1204 Superfamily II helicas 100.0 2.7E-31 5.9E-36 293.3 25.9 323 19-362 13-405 (766)
75 TIGR00963 secA preprotein tran 100.0 3.4E-30 7.5E-35 278.2 30.8 326 26-368 45-520 (745)
76 PRK04914 ATP-dependent helicas 100.0 4.6E-29 1E-33 279.9 36.4 316 38-364 152-602 (956)
77 COG1200 RecG RecG-like helicas 100.0 5.1E-29 1.1E-33 262.2 34.2 326 16-366 241-592 (677)
78 TIGR00595 priA primosomal prot 100.0 6.9E-30 1.5E-34 273.2 28.1 290 57-366 1-383 (505)
79 COG1197 Mfd Transcription-repa 100.0 6.4E-29 1.4E-33 274.7 35.3 325 15-365 572-913 (1139)
80 KOG0354 DEAD-box like helicase 100.0 7.2E-30 1.6E-34 272.3 26.2 315 36-368 60-532 (746)
81 KOG0952 DNA/RNA helicase MER3/ 100.0 4.1E-29 9E-34 269.0 28.9 331 31-378 103-504 (1230)
82 COG1061 SSL2 DNA or RNA helica 100.0 3.6E-29 7.8E-34 264.5 27.7 295 37-357 35-382 (442)
83 PRK11131 ATP-dependent RNA hel 100.0 8.1E-29 1.7E-33 281.5 28.4 299 42-370 78-416 (1294)
84 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.5E-27 5.4E-32 270.4 27.0 300 44-369 73-408 (1283)
85 PRK12906 secA preprotein trans 100.0 1.6E-26 3.4E-31 252.1 31.0 325 26-367 69-555 (796)
86 KOG0329 ATP-dependent RNA heli 100.0 1.4E-28 3.1E-33 227.6 11.8 297 14-366 41-356 (387)
87 KOG0951 RNA helicase BRR2, DEA 100.0 1.1E-26 2.3E-31 253.2 26.1 329 33-377 304-714 (1674)
88 PRK09694 helicase Cas3; Provis 99.9 1.5E-25 3.3E-30 250.2 32.3 311 34-354 282-664 (878)
89 PRK12904 preprotein translocas 99.9 1.4E-24 3E-29 237.8 31.7 325 26-367 70-575 (830)
90 PRK11448 hsdR type I restricti 99.9 1.5E-24 3.3E-29 248.7 30.2 319 38-364 413-814 (1123)
91 KOG0349 Putative DEAD-box RNA 99.9 4.7E-26 1E-30 224.6 15.0 268 80-364 288-614 (725)
92 KOG0947 Cytoplasmic exosomal R 99.9 5.8E-25 1.2E-29 234.7 22.4 324 26-376 286-736 (1248)
93 PRK13104 secA preprotein trans 99.9 3.5E-24 7.6E-29 234.8 28.4 323 28-367 73-589 (896)
94 COG4581 Superfamily II RNA hel 99.9 1.5E-24 3.2E-29 240.2 23.9 309 32-361 114-533 (1041)
95 KOG0950 DNA polymerase theta/e 99.9 5.6E-24 1.2E-28 228.9 23.1 337 24-379 209-625 (1008)
96 PLN03142 Probable chromatin-re 99.9 2.1E-22 4.5E-27 227.2 31.8 308 38-362 169-594 (1033)
97 KOG0948 Nuclear exosomal RNA h 99.9 4.2E-24 9.1E-29 223.1 16.7 319 34-376 126-551 (1041)
98 PRK13107 preprotein translocas 99.9 4.4E-22 9.4E-27 217.7 32.0 324 27-367 72-593 (908)
99 COG4098 comFA Superfamily II D 99.9 5.5E-22 1.2E-26 191.6 28.5 285 38-354 97-403 (441)
100 COG1643 HrpA HrpA-like helicas 99.9 1.1E-21 2.3E-26 216.5 25.3 300 41-368 53-390 (845)
101 COG1110 Reverse gyrase [DNA re 99.9 3.4E-21 7.3E-26 208.5 28.5 292 24-337 69-417 (1187)
102 COG1198 PriA Primosomal protei 99.9 2.8E-21 6.1E-26 210.1 28.3 321 38-375 198-613 (730)
103 PRK12899 secA preprotein trans 99.9 2.4E-21 5.2E-26 212.2 27.8 121 244-367 552-683 (970)
104 TIGR00631 uvrb excinuclease AB 99.9 5.1E-21 1.1E-25 209.8 29.8 116 257-373 441-561 (655)
105 cd00268 DEADc DEAD-box helicas 99.9 6.7E-22 1.5E-26 188.4 19.6 182 17-214 1-195 (203)
106 KOG0922 DEAH-box RNA helicase 99.9 1.1E-21 2.4E-26 205.0 21.9 298 44-370 57-395 (674)
107 COG1203 CRISPR-associated heli 99.9 2.1E-21 4.6E-26 217.2 25.5 313 39-363 196-548 (733)
108 PRK12900 secA preprotein trans 99.9 4.1E-20 9E-25 203.0 31.8 124 243-368 581-714 (1025)
109 PRK05298 excinuclease ABC subu 99.9 4.4E-19 9.5E-24 196.0 31.9 110 257-367 445-559 (652)
110 PRK12326 preprotein translocas 99.8 2E-18 4.2E-23 185.2 32.9 324 26-367 67-549 (764)
111 KOG0923 mRNA splicing factor A 99.8 1E-19 2.2E-24 188.5 22.3 300 39-365 266-606 (902)
112 PF00270 DEAD: DEAD/DEAH box h 99.8 2.3E-20 5E-25 172.2 14.4 156 40-207 1-166 (169)
113 TIGR01407 dinG_rel DnaQ family 99.8 5.4E-18 1.2E-22 193.6 31.4 167 195-365 597-814 (850)
114 TIGR00348 hsdR type I site-spe 99.8 2.6E-18 5.6E-23 190.5 27.6 312 21-351 212-633 (667)
115 KOG0926 DEAH-box RNA helicase 99.8 1.7E-19 3.7E-24 190.0 16.6 300 44-365 262-704 (1172)
116 KOG0385 Chromatin remodeling c 99.8 2.8E-18 6E-23 180.7 24.7 307 37-361 166-593 (971)
117 KOG4150 Predicted ATP-dependen 99.8 3E-19 6.6E-24 181.8 16.2 331 33-370 281-647 (1034)
118 KOG0949 Predicted helicase, DE 99.8 6E-18 1.3E-22 181.8 26.0 154 39-206 512-674 (1330)
119 COG0556 UvrB Helicase subunit 99.8 1.1E-17 2.3E-22 170.6 26.0 164 193-364 386-556 (663)
120 KOG0924 mRNA splicing factor A 99.8 1.1E-18 2.3E-23 181.2 18.8 300 40-365 358-697 (1042)
121 PRK13103 secA preprotein trans 99.8 1E-17 2.2E-22 183.8 27.4 323 27-367 72-593 (913)
122 PRK12903 secA preprotein trans 99.8 1.3E-16 2.8E-21 173.4 28.6 324 26-367 67-541 (925)
123 cd00079 HELICc Helicase superf 99.8 7.8E-18 1.7E-22 148.1 14.1 118 244-361 12-131 (131)
124 COG4096 HsdR Type I site-speci 99.8 3.6E-18 7.7E-23 182.8 14.0 338 5-365 129-545 (875)
125 PRK07246 bifunctional ATP-depe 99.8 2.7E-16 5.7E-21 177.5 29.3 168 195-365 575-783 (820)
126 CHL00122 secA preprotein trans 99.7 1.1E-15 2.4E-20 167.3 30.7 282 26-325 65-491 (870)
127 KOG0953 Mitochondrial RNA heli 99.7 9.7E-17 2.1E-21 164.0 20.7 279 54-377 192-488 (700)
128 PF00271 Helicase_C: Helicase 99.7 6.8E-18 1.5E-22 135.0 9.2 78 276-353 1-78 (78)
129 KOG0920 ATP-dependent RNA heli 99.7 8.8E-17 1.9E-21 177.1 20.3 308 39-369 174-548 (924)
130 KOG0384 Chromodomain-helicase 99.7 1.1E-16 2.4E-21 176.1 20.3 315 37-365 369-811 (1373)
131 KOG0925 mRNA splicing factor A 99.7 6.6E-15 1.4E-19 148.4 30.1 321 14-365 24-387 (699)
132 PRK12902 secA preprotein trans 99.7 3E-14 6.6E-19 155.8 34.7 282 27-325 75-506 (939)
133 KOG1123 RNA polymerase II tran 99.7 6.5E-17 1.4E-21 163.1 11.1 285 37-354 301-636 (776)
134 PRK08074 bifunctional ATP-depe 99.7 1.9E-14 4.1E-19 165.3 32.7 170 195-365 674-893 (928)
135 KOG0390 DNA repair protein, SN 99.7 6.1E-15 1.3E-19 160.1 23.5 309 38-362 238-702 (776)
136 KOG0387 Transcription-coupled 99.7 5E-15 1.1E-19 157.2 22.0 309 37-361 204-652 (923)
137 TIGR03117 cas_csf4 CRISPR-asso 99.7 8.4E-14 1.8E-18 151.0 29.7 168 195-365 373-616 (636)
138 KOG0389 SNF2 family DNA-depend 99.7 1E-14 2.2E-19 154.7 21.7 317 39-367 400-890 (941)
139 PRK14873 primosome assembly pr 99.6 2.4E-13 5.3E-18 149.2 28.3 290 57-374 164-547 (665)
140 smart00487 DEXDc DEAD-like hel 99.6 1.4E-14 3E-19 136.1 16.0 167 34-215 4-182 (201)
141 PRK11747 dinG ATP-dependent DN 99.6 8.5E-13 1.8E-17 147.3 30.8 164 196-365 459-674 (697)
142 smart00490 HELICc helicase sup 99.6 4.9E-15 1.1E-19 118.9 9.3 81 273-353 2-82 (82)
143 COG1199 DinG Rad3-related DNA 99.6 5.7E-13 1.2E-17 149.2 27.2 167 195-365 405-617 (654)
144 PF04851 ResIII: Type III rest 99.6 3.2E-15 6.9E-20 139.4 6.1 158 38-204 3-183 (184)
145 KOG1000 Chromatin remodeling p 99.5 1.5E-13 3.2E-18 139.0 17.0 305 37-362 197-598 (689)
146 TIGR00604 rad3 DNA repair heli 99.5 2.2E-12 4.7E-17 145.0 28.0 69 33-101 5-83 (705)
147 COG4889 Predicted helicase [Ge 99.5 5.1E-14 1.1E-18 150.2 13.0 334 12-353 137-573 (1518)
148 PRK12901 secA preprotein trans 99.5 5.7E-12 1.2E-16 139.6 26.7 123 243-367 611-743 (1112)
149 KOG0951 RNA helicase BRR2, DEA 99.5 1.1E-12 2.3E-17 145.0 19.1 311 38-379 1143-1508(1674)
150 KOG0386 Chromatin remodeling c 99.5 3.4E-13 7.5E-18 146.4 14.1 323 38-376 394-847 (1157)
151 cd00046 DEXDc DEAD-like helica 99.4 2E-12 4.3E-17 114.2 11.0 136 54-203 1-144 (144)
152 TIGR02562 cas3_yersinia CRISPR 99.3 9.3E-11 2E-15 130.7 22.4 91 261-354 759-881 (1110)
153 KOG0392 SNF2 family DNA-depend 99.3 8.9E-11 1.9E-15 129.9 21.9 302 38-357 975-1444(1549)
154 KOG0388 SNF2 family DNA-depend 99.2 9.2E-10 2E-14 115.9 21.4 105 257-361 1043-1148(1185)
155 COG0653 SecA Preprotein transl 99.1 6.7E-09 1.4E-13 114.0 23.3 323 28-367 71-547 (822)
156 KOG1002 Nucleotide excision re 99.1 5.9E-09 1.3E-13 106.1 17.8 106 260-365 640-749 (791)
157 PF02399 Herpes_ori_bp: Origin 99.0 2.4E-08 5.1E-13 109.2 22.3 281 55-365 51-388 (824)
158 KOG4439 RNA polymerase II tran 99.0 2.1E-08 4.5E-13 106.1 19.5 90 272-361 760-852 (901)
159 KOG0391 SNF2 family DNA-depend 99.0 1.9E-08 4.1E-13 111.0 19.8 120 258-377 1276-1397(1958)
160 PF00176 SNF2_N: SNF2 family N 99.0 2.2E-09 4.7E-14 108.2 11.7 161 42-220 1-189 (299)
161 COG0553 HepA Superfamily II DN 99.0 5.1E-08 1.1E-12 113.1 21.8 103 260-362 713-817 (866)
162 PF07652 Flavi_DEAD: Flaviviru 98.9 3.6E-10 7.8E-15 98.7 1.6 133 52-207 3-140 (148)
163 KOG1015 Transcription regulato 98.8 4.4E-07 9.5E-12 98.8 18.5 104 258-361 1142-1271(1567)
164 PF06862 DUF1253: Protein of u 98.7 1.4E-05 3E-10 83.5 28.7 219 156-375 159-425 (442)
165 COG0610 Type I site-specific r 98.7 5.4E-06 1.2E-10 95.7 25.6 282 54-352 274-636 (962)
166 PF07517 SecA_DEAD: SecA DEAD- 98.7 2.4E-07 5.1E-12 90.8 12.2 134 27-171 67-210 (266)
167 smart00489 DEXDc3 DEAD-like he 98.5 7.1E-07 1.5E-11 89.6 12.0 75 33-108 4-91 (289)
168 smart00488 DEXDc2 DEAD-like he 98.5 7.1E-07 1.5E-11 89.6 12.0 75 33-108 4-91 (289)
169 KOG2340 Uncharacterized conser 98.3 1.5E-05 3.2E-10 82.6 16.2 116 260-375 554-678 (698)
170 KOG0921 Dosage compensation co 98.3 3.7E-06 8E-11 91.5 11.0 107 258-365 643-774 (1282)
171 PRK15483 type III restriction- 98.3 1.9E-05 4.2E-10 89.2 15.8 45 308-352 501-545 (986)
172 PF13307 Helicase_C_2: Helicas 98.2 3.5E-06 7.6E-11 77.5 7.7 113 250-365 2-150 (167)
173 KOG0952 DNA/RNA helicase MER3/ 98.2 1.5E-07 3.3E-12 103.8 -2.4 220 38-278 927-1173(1230)
174 TIGR00596 rad1 DNA repair prot 98.0 0.00019 4E-09 81.1 18.4 79 131-218 8-92 (814)
175 PF13872 AAA_34: P-loop contai 98.0 0.00011 2.3E-09 72.6 13.0 163 38-207 37-224 (303)
176 PF13604 AAA_30: AAA domain; P 97.8 9.9E-05 2.1E-09 69.8 8.8 56 38-93 1-61 (196)
177 KOG1802 RNA helicase nonsense 97.7 0.00037 8.1E-09 74.3 12.1 77 33-110 405-486 (935)
178 PF13086 AAA_11: AAA domain; P 97.6 0.00013 2.8E-09 70.3 7.2 63 38-100 1-75 (236)
179 KOG1016 Predicted DNA helicase 97.6 0.018 4E-07 62.7 23.0 116 258-373 719-855 (1387)
180 COG3587 Restriction endonuclea 97.6 0.0013 2.8E-08 72.3 14.6 71 307-377 482-565 (985)
181 KOG1803 DNA helicase [Replicat 97.6 0.00043 9.3E-09 73.5 10.6 63 37-99 184-250 (649)
182 KOG1805 DNA replication helica 97.5 0.0011 2.4E-08 73.8 12.3 127 38-172 669-810 (1100)
183 PF02562 PhoH: PhoH-like prote 97.4 0.00034 7.3E-09 66.1 6.8 54 37-90 3-61 (205)
184 PF13245 AAA_19: Part of AAA d 97.4 0.00046 9.9E-09 54.4 6.2 53 46-98 2-62 (76)
185 PRK10536 hypothetical protein; 97.4 0.002 4.4E-08 62.6 11.7 57 34-90 55-116 (262)
186 smart00492 HELICc3 helicase su 97.3 0.0019 4E-08 57.6 10.3 93 271-363 4-136 (141)
187 smart00491 HELICc2 helicase su 97.3 0.0017 3.6E-08 57.9 9.3 94 271-364 4-138 (142)
188 TIGR01448 recD_rel helicase, p 97.3 0.003 6.5E-08 71.4 13.5 62 30-92 316-382 (720)
189 PF09848 DUF2075: Uncharacteri 97.3 0.0011 2.4E-08 68.7 9.0 46 55-100 3-53 (352)
190 TIGR01447 recD exodeoxyribonuc 97.1 0.007 1.5E-07 66.6 13.2 71 29-99 136-214 (586)
191 PF13401 AAA_22: AAA domain; P 97.1 0.0018 4E-08 56.4 7.2 18 53-70 4-21 (131)
192 PRK10875 recD exonuclease V su 97.1 0.0063 1.4E-07 67.2 12.8 77 23-99 136-220 (615)
193 PRK12723 flagellar biosynthesi 97.0 0.011 2.4E-07 61.6 13.6 124 54-216 175-310 (388)
194 COG1875 NYN ribonuclease and A 97.0 0.0024 5.3E-08 64.2 7.8 61 31-91 221-289 (436)
195 PF12340 DUF3638: Protein of u 96.8 0.018 4E-07 55.0 12.2 80 16-100 4-91 (229)
196 TIGR00376 DNA helicase, putati 96.8 0.0052 1.1E-07 68.5 9.8 73 37-109 156-232 (637)
197 PRK08181 transposase; Validate 96.8 0.011 2.4E-07 58.6 10.8 54 40-93 89-148 (269)
198 PF00448 SRP54: SRP54-type pro 96.8 0.021 4.6E-07 53.8 12.4 127 56-215 4-137 (196)
199 cd00009 AAA The AAA+ (ATPases 96.7 0.014 3.1E-07 51.0 10.3 19 53-71 19-37 (151)
200 KOG0383 Predicted helicase [Ge 96.7 0.00091 2E-08 73.4 2.9 64 257-321 630-696 (696)
201 COG2256 MGS1 ATPase related to 96.7 0.0072 1.6E-07 61.7 8.7 61 28-89 21-84 (436)
202 PRK14956 DNA polymerase III su 96.7 0.014 3E-07 62.0 11.3 58 1-74 1-61 (484)
203 KOG1132 Helicase of the DEAD s 96.7 0.0072 1.6E-07 66.9 9.3 77 33-110 17-144 (945)
204 KOG1131 RNA polymerase II tran 96.6 0.012 2.6E-07 61.5 9.8 67 33-99 11-88 (755)
205 PRK06526 transposase; Provisio 96.6 0.012 2.5E-07 57.9 9.3 44 50-93 95-140 (254)
206 PRK04296 thymidine kinase; Pro 96.5 0.0063 1.4E-07 57.2 6.6 32 55-86 4-38 (190)
207 PRK08727 hypothetical protein; 96.5 0.019 4.1E-07 55.8 10.2 16 54-69 42-57 (233)
208 PF13871 Helicase_C_4: Helicas 96.5 0.0089 1.9E-07 59.0 7.8 58 299-356 52-117 (278)
209 PF00580 UvrD-helicase: UvrD/R 96.5 0.0041 9E-08 62.8 5.6 60 39-100 1-67 (315)
210 COG1419 FlhF Flagellar GTP-bin 96.4 0.061 1.3E-06 55.5 13.8 128 53-219 203-339 (407)
211 PF05970 PIF1: PIF1-like helic 96.4 0.014 3E-07 60.7 9.3 54 38-91 1-63 (364)
212 PLN03025 replication factor C 96.3 0.021 4.5E-07 58.4 9.8 48 158-211 99-146 (319)
213 PRK06921 hypothetical protein; 96.3 0.11 2.3E-06 51.6 14.1 41 53-93 117-160 (266)
214 PRK12377 putative replication 96.2 0.029 6.3E-07 54.9 9.8 40 54-93 102-143 (248)
215 smart00382 AAA ATPases associa 96.2 0.0099 2.1E-07 51.5 6.0 38 53-90 2-42 (148)
216 PRK05703 flhF flagellar biosyn 96.2 0.17 3.6E-06 53.7 16.1 56 158-217 299-356 (424)
217 cd01122 GP4d_helicase GP4d_hel 96.2 0.076 1.6E-06 52.7 12.8 119 51-172 28-154 (271)
218 PRK11889 flhF flagellar biosyn 96.2 0.13 2.8E-06 53.3 14.4 55 158-216 320-375 (436)
219 cd01124 KaiC KaiC is a circadi 96.2 0.034 7.3E-07 51.7 9.6 48 56-104 2-52 (187)
220 PRK07952 DNA replication prote 96.1 0.083 1.8E-06 51.6 12.4 52 41-92 79-140 (244)
221 PRK06893 DNA replication initi 96.1 0.023 5E-07 55.1 8.4 47 159-208 92-139 (229)
222 PRK08084 DNA replication initi 96.0 0.069 1.5E-06 51.9 11.1 17 54-70 46-62 (235)
223 cd01120 RecA-like_NTPases RecA 95.9 0.099 2.1E-06 46.8 11.3 35 56-90 2-39 (165)
224 PRK14974 cell division protein 95.9 0.36 7.8E-06 49.4 16.4 50 158-211 222-272 (336)
225 KOG1133 Helicase of the DEAD s 95.8 0.18 3.9E-06 54.8 14.0 112 249-364 621-779 (821)
226 COG1110 Reverse gyrase [DNA re 95.7 0.05 1.1E-06 61.6 9.6 95 240-334 107-211 (1187)
227 PRK06835 DNA replication prote 95.6 0.15 3.3E-06 52.1 12.3 41 53-93 183-225 (329)
228 PRK06645 DNA polymerase III su 95.6 0.098 2.1E-06 56.6 11.2 57 2-74 5-64 (507)
229 PRK13342 recombination factor 95.6 0.067 1.5E-06 56.7 9.9 20 54-73 37-56 (413)
230 PRK14722 flhF flagellar biosyn 95.6 0.24 5.1E-06 51.4 13.4 54 158-215 215-269 (374)
231 cd00984 DnaB_C DnaB helicase C 95.6 0.1 2.2E-06 50.8 10.5 118 52-172 12-137 (242)
232 PF00004 AAA: ATPase family as 95.5 0.052 1.1E-06 47.0 7.5 29 56-84 1-29 (132)
233 PRK14949 DNA polymerase III su 95.5 0.092 2E-06 59.7 11.1 45 157-207 118-162 (944)
234 PRK12323 DNA polymerase III su 95.5 0.063 1.4E-06 59.0 9.5 51 156-212 122-172 (700)
235 PF13173 AAA_14: AAA domain 95.5 0.055 1.2E-06 47.1 7.6 41 159-207 62-102 (128)
236 KOG0989 Replication factor C, 95.5 0.075 1.6E-06 52.5 8.9 36 42-77 40-81 (346)
237 PRK14959 DNA polymerase III su 95.5 0.11 2.4E-06 57.1 11.2 46 157-208 118-163 (624)
238 PRK08769 DNA polymerase III su 95.5 0.061 1.3E-06 54.6 8.7 35 36-70 2-43 (319)
239 PRK08116 hypothetical protein; 95.5 0.21 4.5E-06 49.6 12.3 39 55-93 116-156 (268)
240 PRK13341 recombination factor 95.5 0.095 2.1E-06 59.2 11.0 19 55-73 54-72 (725)
241 PF05621 TniB: Bacterial TniB 95.4 0.11 2.5E-06 51.7 10.2 17 54-70 62-78 (302)
242 PRK12422 chromosomal replicati 95.4 0.14 3E-06 54.7 11.7 49 158-209 202-250 (445)
243 PRK14958 DNA polymerase III su 95.4 0.11 2.3E-06 56.5 10.9 42 156-203 117-158 (509)
244 PRK05580 primosome assembly pr 95.4 0.099 2.2E-06 58.9 11.0 76 258-334 190-266 (679)
245 PRK12724 flagellar biosynthesi 95.4 0.57 1.2E-05 49.2 15.5 122 55-216 225-357 (432)
246 PRK14712 conjugal transfer nic 95.4 0.073 1.6E-06 64.3 10.2 65 38-106 835-908 (1623)
247 PRK07003 DNA polymerase III su 95.3 0.072 1.6E-06 59.4 9.1 45 157-207 118-162 (830)
248 PRK05563 DNA polymerase III su 95.3 0.09 1.9E-06 57.8 9.9 46 156-207 117-162 (559)
249 PF00308 Bac_DnaA: Bacterial d 95.3 0.089 1.9E-06 50.6 8.8 55 158-216 97-156 (219)
250 PRK05973 replicative DNA helic 95.2 0.29 6.3E-06 47.5 12.2 84 19-104 22-117 (237)
251 PTZ00112 origin recognition co 95.2 0.48 1E-05 53.8 15.1 31 40-70 760-798 (1164)
252 PRK04195 replication factor C 95.2 0.12 2.7E-06 55.8 10.8 21 53-73 39-59 (482)
253 TIGR02768 TraA_Ti Ti-type conj 95.2 0.89 1.9E-05 51.9 17.7 54 38-91 352-409 (744)
254 PRK06731 flhF flagellar biosyn 95.2 0.62 1.3E-05 46.2 14.5 56 157-216 153-209 (270)
255 PRK10917 ATP-dependent DNA hel 95.2 0.16 3.5E-06 57.4 11.7 76 257-332 309-389 (681)
256 TIGR02881 spore_V_K stage V sp 95.2 0.092 2E-06 51.9 8.7 19 54-72 43-61 (261)
257 KOG2028 ATPase related to the 95.1 0.1 2.2E-06 52.8 8.7 49 28-77 135-186 (554)
258 PRK12727 flagellar biosynthesi 95.1 0.66 1.4E-05 50.1 15.4 54 158-215 428-481 (559)
259 PHA02544 44 clamp loader, smal 95.1 0.35 7.6E-06 49.1 13.1 44 159-207 101-144 (316)
260 PRK14964 DNA polymerase III su 95.1 0.22 4.9E-06 53.5 11.8 48 157-210 115-162 (491)
261 TIGR02928 orc1/cdc6 family rep 95.0 0.21 4.6E-06 51.8 11.5 17 54-70 41-57 (365)
262 PRK05707 DNA polymerase III su 95.0 0.19 4.1E-06 51.4 10.7 33 39-71 4-40 (328)
263 PRK00149 dnaA chromosomal repl 95.0 0.19 4E-06 54.0 11.1 44 54-97 149-196 (450)
264 PRK13826 Dtr system oriT relax 95.0 0.19 4.1E-06 58.9 11.6 68 37-108 380-452 (1102)
265 PRK07994 DNA polymerase III su 94.9 0.18 3.8E-06 56.0 10.9 46 156-207 117-162 (647)
266 TIGR00595 priA primosomal prot 94.9 0.11 2.3E-06 56.5 9.1 76 258-334 25-101 (505)
267 PRK14962 DNA polymerase III su 94.9 0.14 3E-06 55.1 9.7 18 55-72 38-55 (472)
268 PF03796 DnaB_C: DnaB-like hel 94.7 0.085 1.8E-06 52.1 7.2 145 54-203 20-180 (259)
269 PRK13889 conjugal transfer rel 94.7 1.7 3.7E-05 50.8 18.4 54 38-91 346-403 (988)
270 TIGR03015 pepcterm_ATPase puta 94.7 0.24 5.2E-06 48.9 10.4 32 41-72 26-62 (269)
271 PRK14951 DNA polymerase III su 94.7 0.19 4E-06 55.7 10.3 46 156-207 122-167 (618)
272 PRK08903 DnaA regulatory inact 94.7 0.22 4.7E-06 48.0 9.8 17 53-69 42-58 (227)
273 cd01126 TraG_VirD4 The TraG/Tr 94.7 0.026 5.5E-07 59.3 3.5 56 55-110 1-57 (384)
274 PF05496 RuvB_N: Holliday junc 94.6 0.055 1.2E-06 51.6 5.2 22 55-76 52-73 (233)
275 TIGR00362 DnaA chromosomal rep 94.6 0.19 4.2E-06 53.0 10.1 16 55-70 138-153 (405)
276 PRK13709 conjugal transfer nic 94.6 0.16 3.4E-06 62.3 10.2 67 38-108 967-1042(1747)
277 TIGR03600 phage_DnaB phage rep 94.6 0.41 8.8E-06 50.9 12.5 146 53-202 194-353 (421)
278 KOG0739 AAA+-type ATPase [Post 94.6 0.35 7.5E-06 47.7 10.5 120 48-213 156-287 (439)
279 PRK14961 DNA polymerase III su 94.6 0.18 3.8E-06 52.5 9.4 18 55-72 40-57 (363)
280 TIGR02760 TraI_TIGR conjugativ 94.5 2 4.4E-05 54.1 19.8 55 38-92 429-488 (1960)
281 PRK07133 DNA polymerase III su 94.5 0.14 3.1E-06 57.3 8.9 44 156-205 116-159 (725)
282 COG1474 CDC6 Cdc6-related prot 94.5 0.79 1.7E-05 47.6 13.8 31 40-70 22-59 (366)
283 TIGR02760 TraI_TIGR conjugativ 94.5 0.16 3.5E-06 63.6 10.2 66 37-106 1018-1092(1960)
284 PRK14873 primosome assembly pr 94.4 0.3 6.6E-06 54.6 11.3 76 258-334 188-265 (665)
285 PRK05642 DNA replication initi 94.4 0.26 5.7E-06 47.8 9.5 44 159-206 98-142 (234)
286 PRK08691 DNA polymerase III su 94.3 0.3 6.4E-06 54.3 10.7 45 157-207 118-162 (709)
287 KOG0741 AAA+-type ATPase [Post 94.3 0.42 9.2E-06 50.7 11.2 48 156-203 596-648 (744)
288 PRK14957 DNA polymerase III su 94.3 0.2 4.3E-06 54.7 9.3 41 156-202 117-157 (546)
289 PRK09183 transposase/IS protei 94.3 0.45 9.8E-06 47.0 11.1 42 50-92 99-143 (259)
290 PRK00411 cdc6 cell division co 94.2 1 2.2E-05 47.3 14.4 17 54-70 56-72 (394)
291 PRK07764 DNA polymerase III su 94.2 0.27 5.9E-06 56.3 10.4 44 157-206 119-162 (824)
292 TIGR00643 recG ATP-dependent D 94.2 0.36 7.8E-06 54.1 11.3 75 258-332 284-363 (630)
293 PF03354 Terminase_1: Phage Te 94.1 0.32 6.9E-06 52.6 10.6 61 41-101 1-77 (477)
294 TIGR03878 thermo_KaiC_2 KaiC d 94.1 0.38 8.3E-06 47.5 10.1 51 53-103 36-92 (259)
295 PF02534 T4SS-DNA_transf: Type 94.0 0.045 9.7E-07 59.0 3.7 56 54-109 45-101 (469)
296 PRK14960 DNA polymerase III su 94.0 0.3 6.4E-06 54.0 9.8 45 157-207 117-161 (702)
297 cd01121 Sms Sms (bacterial rad 94.0 0.51 1.1E-05 49.1 11.3 57 45-102 69-133 (372)
298 PRK14952 DNA polymerase III su 94.0 0.46 1E-05 52.3 11.4 50 156-211 116-165 (584)
299 PRK10416 signal recognition pa 94.0 2.6 5.7E-05 42.9 16.2 57 157-214 195-255 (318)
300 PHA02533 17 large terminase pr 94.0 0.39 8.4E-06 52.4 10.8 63 38-100 59-126 (534)
301 PRK14953 DNA polymerase III su 93.9 0.51 1.1E-05 51.0 11.5 41 156-202 117-157 (486)
302 COG1444 Predicted P-loop ATPas 93.9 0.34 7.4E-06 54.1 10.2 135 37-205 213-358 (758)
303 PRK09111 DNA polymerase III su 93.9 0.56 1.2E-05 51.9 11.9 44 156-205 130-173 (598)
304 PRK00771 signal recognition pa 93.8 1.9 4E-05 45.9 15.3 47 159-209 176-223 (437)
305 PRK12726 flagellar biosynthesi 93.8 1.6 3.5E-05 45.2 14.1 55 157-215 284-339 (407)
306 KOG1133 Helicase of the DEAD s 93.8 0.078 1.7E-06 57.5 4.8 43 33-75 9-56 (821)
307 PRK08760 replicative DNA helic 93.8 0.23 4.9E-06 53.6 8.5 146 54-202 230-388 (476)
308 TIGR03420 DnaA_homol_Hda DnaA 93.7 0.36 7.9E-06 46.2 9.1 19 53-71 38-56 (226)
309 PRK05896 DNA polymerase III su 93.7 0.55 1.2E-05 51.6 11.2 44 158-207 119-162 (605)
310 PRK06904 replicative DNA helic 93.7 1.4 3E-05 47.5 14.2 145 54-201 222-382 (472)
311 PRK08840 replicative DNA helic 93.7 0.79 1.7E-05 49.2 12.3 145 54-201 218-377 (464)
312 PRK11823 DNA repair protein Ra 93.6 0.6 1.3E-05 49.9 11.3 57 46-103 68-132 (446)
313 PRK14087 dnaA chromosomal repl 93.6 0.73 1.6E-05 49.3 11.9 45 54-98 142-190 (450)
314 COG1222 RPT1 ATP-dependent 26S 93.6 0.66 1.4E-05 47.1 10.6 75 14-92 147-223 (406)
315 PRK10919 ATP-dependent DNA hel 93.6 0.13 2.8E-06 58.0 6.5 61 38-100 2-69 (672)
316 PRK14086 dnaA chromosomal repl 93.6 0.46 1E-05 52.2 10.4 43 55-97 316-362 (617)
317 PRK14955 DNA polymerase III su 93.5 0.61 1.3E-05 49.1 11.1 42 156-203 125-166 (397)
318 PRK14721 flhF flagellar biosyn 93.5 1.7 3.7E-05 45.8 14.2 55 158-216 269-324 (420)
319 PRK06871 DNA polymerase III su 93.5 0.29 6.2E-06 49.9 8.2 52 154-211 103-154 (325)
320 CHL00176 ftsH cell division pr 93.5 0.96 2.1E-05 50.5 12.9 19 54-72 217-235 (638)
321 PRK09165 replicative DNA helic 93.4 0.39 8.4E-06 52.1 9.6 146 54-202 218-392 (497)
322 PRK06067 flagellar accessory p 93.4 2.1 4.5E-05 41.4 14.0 51 53-104 25-78 (234)
323 TIGR02655 circ_KaiC circadian 93.4 0.29 6.2E-06 53.0 8.5 109 44-170 249-365 (484)
324 PTZ00454 26S protease regulato 93.4 0.76 1.6E-05 48.3 11.4 22 53-74 179-200 (398)
325 PRK12402 replication factor C 93.4 0.88 1.9E-05 46.5 11.8 40 158-203 125-164 (337)
326 PRK13897 type IV secretion sys 93.4 0.074 1.6E-06 58.6 4.0 57 54-110 159-216 (606)
327 PRK14088 dnaA chromosomal repl 93.3 0.97 2.1E-05 48.3 12.3 18 54-71 131-148 (440)
328 TIGR03877 thermo_KaiC_1 KaiC d 93.3 0.13 2.9E-06 50.0 5.3 51 53-104 21-74 (237)
329 PRK14948 DNA polymerase III su 93.3 0.44 9.5E-06 53.0 9.9 19 54-72 39-57 (620)
330 PRK06964 DNA polymerase III su 93.3 0.35 7.5E-06 49.7 8.4 51 156-212 130-180 (342)
331 PRK05595 replicative DNA helic 93.3 0.37 8.1E-06 51.5 9.1 156 44-202 188-360 (444)
332 PRK08939 primosomal protein Dn 93.3 0.3 6.6E-06 49.4 7.9 17 53-69 156-172 (306)
333 TIGR01075 uvrD DNA helicase II 93.3 0.13 2.9E-06 58.5 5.9 63 37-101 3-72 (715)
334 PRK05748 replicative DNA helic 93.2 0.47 1E-05 50.9 9.8 144 54-203 204-365 (448)
335 PRK14969 DNA polymerase III su 93.2 0.48 1E-05 51.8 9.9 19 55-73 40-58 (527)
336 PRK11773 uvrD DNA-dependent he 93.2 0.14 3E-06 58.4 6.0 63 37-101 8-77 (721)
337 PRK08533 flagellar accessory p 93.1 1.1 2.4E-05 43.3 11.4 51 52-103 23-76 (230)
338 PRK06321 replicative DNA helic 93.1 1.1 2.3E-05 48.3 12.3 155 45-202 214-388 (472)
339 PRK06090 DNA polymerase III su 93.1 0.33 7.1E-06 49.3 7.9 52 155-212 105-156 (319)
340 PHA02542 41 41 helicase; Provi 93.0 0.99 2.1E-05 48.6 11.8 155 44-203 176-354 (473)
341 COG0464 SpoVK ATPases of the A 93.0 1.1 2.3E-05 48.8 12.2 39 54-93 277-315 (494)
342 PF01695 IstB_IS21: IstB-like 93.0 0.15 3.2E-06 47.4 4.8 42 52-93 46-89 (178)
343 TIGR01425 SRP54_euk signal rec 92.9 3 6.6E-05 44.1 14.9 120 55-207 102-228 (429)
344 TIGR00064 ftsY signal recognit 92.9 4.3 9.4E-05 40.3 15.4 51 54-104 73-129 (272)
345 TIGR00580 mfd transcription-re 92.9 0.75 1.6E-05 53.6 11.3 75 258-332 500-579 (926)
346 PRK07940 DNA polymerase III su 92.8 0.38 8.2E-06 50.5 8.1 50 156-211 115-164 (394)
347 TIGR01241 FtsH_fam ATP-depende 92.8 0.83 1.8E-05 49.6 11.0 19 54-72 89-107 (495)
348 TIGR01243 CDC48 AAA family ATP 92.8 1 2.2E-05 51.5 12.2 32 54-85 488-519 (733)
349 PRK08006 replicative DNA helic 92.8 1.3 2.8E-05 47.7 12.2 145 54-202 225-385 (471)
350 PF13177 DNA_pol3_delta2: DNA 92.8 0.68 1.5E-05 42.1 8.8 50 157-212 101-150 (162)
351 PRK14963 DNA polymerase III su 92.7 0.46 1E-05 51.5 8.9 16 56-71 39-54 (504)
352 COG2255 RuvB Holliday junction 92.7 0.25 5.5E-06 48.5 6.0 47 28-74 23-73 (332)
353 PF05876 Terminase_GpA: Phage 92.6 0.76 1.6E-05 50.6 10.5 60 38-97 16-81 (557)
354 KOG1001 Helicase-like transcri 92.6 0.3 6.5E-06 54.5 7.4 140 56-217 155-306 (674)
355 TIGR00635 ruvB Holliday juncti 92.6 0.88 1.9E-05 45.9 10.3 18 54-71 31-48 (305)
356 PRK13833 conjugal transfer pro 92.6 0.31 6.8E-06 49.5 6.9 52 39-90 129-186 (323)
357 PRK14723 flhF flagellar biosyn 92.6 2.2 4.7E-05 48.3 14.0 54 159-216 264-318 (767)
358 PRK14965 DNA polymerase III su 92.6 0.52 1.1E-05 52.1 9.1 47 156-208 117-163 (576)
359 PF06745 KaiC: KaiC; InterPro 92.6 0.39 8.5E-06 46.2 7.4 130 53-202 19-159 (226)
360 PRK09112 DNA polymerase III su 92.5 2.3 4.9E-05 44.0 13.3 44 156-205 139-182 (351)
361 PRK05636 replicative DNA helic 92.5 0.56 1.2E-05 50.9 9.1 151 46-201 254-423 (505)
362 PRK00440 rfc replication facto 92.5 1.8 4E-05 43.7 12.6 17 55-71 40-56 (319)
363 CHL00181 cbbX CbbX; Provisiona 92.4 1.3 2.7E-05 44.5 11.0 20 53-72 59-78 (287)
364 PRK13850 type IV secretion sys 92.4 0.14 3E-06 57.2 4.5 57 54-110 140-197 (670)
365 COG1484 DnaC DNA replication p 92.4 0.31 6.7E-06 47.9 6.5 65 34-98 79-152 (254)
366 KOG0298 DEAD box-containing he 92.3 0.14 3E-06 59.3 4.3 148 53-215 374-561 (1394)
367 PF05127 Helicase_RecD: Helica 92.3 0.17 3.6E-06 46.7 4.1 117 57-205 1-125 (177)
368 PRK14950 DNA polymerase III su 92.3 0.91 2E-05 50.4 10.7 40 157-202 119-158 (585)
369 TIGR01243 CDC48 AAA family ATP 92.2 0.79 1.7E-05 52.4 10.3 19 53-71 212-230 (733)
370 PRK10689 transcription-repair 92.2 1.1 2.4E-05 53.4 11.7 76 257-332 648-728 (1147)
371 PRK06995 flhF flagellar biosyn 92.1 3.3 7.1E-05 44.5 14.2 56 158-217 334-390 (484)
372 TIGR02880 cbbX_cfxQ probable R 92.1 0.93 2E-05 45.4 9.6 17 54-70 59-75 (284)
373 TIGR00959 ffh signal recogniti 92.0 5.2 0.00011 42.4 15.4 52 55-106 101-159 (428)
374 KOG0701 dsRNA-specific nucleas 92.0 0.13 2.9E-06 61.6 3.8 95 259-353 293-399 (1606)
375 PF13481 AAA_25: AAA domain; P 92.0 1.2 2.5E-05 41.5 9.7 119 52-180 31-163 (193)
376 COG4185 Uncharacterized protei 91.9 0.34 7.4E-06 43.4 5.4 37 56-93 5-41 (187)
377 PRK10867 signal recognition pa 91.9 4.7 0.0001 42.9 14.8 51 56-106 103-160 (433)
378 COG1219 ClpX ATP-dependent pro 91.9 0.17 3.6E-06 50.4 3.7 19 54-72 98-116 (408)
379 PHA03368 DNA packaging termina 91.8 3 6.5E-05 46.1 13.5 76 22-101 227-307 (738)
380 COG1198 PriA Primosomal protei 91.8 0.57 1.2E-05 52.6 8.3 84 245-331 234-318 (730)
381 PRK04328 hypothetical protein; 91.8 0.13 2.8E-06 50.5 3.0 50 53-103 23-75 (249)
382 PRK13822 conjugal transfer cou 91.7 0.19 4.2E-06 55.9 4.6 57 54-110 225-282 (641)
383 PRK11034 clpA ATP-dependent Cl 91.7 1.2 2.6E-05 50.7 11.0 27 45-71 197-225 (758)
384 PRK07993 DNA polymerase III su 91.7 0.53 1.1E-05 48.3 7.4 53 154-212 104-156 (334)
385 TIGR01074 rep ATP-dependent DN 91.7 0.34 7.4E-06 54.7 6.6 60 39-100 2-68 (664)
386 PHA00350 putative assembly pro 91.7 0.82 1.8E-05 47.7 8.8 24 56-79 4-31 (399)
387 PRK09354 recA recombinase A; P 91.7 1 2.2E-05 46.3 9.3 96 46-171 47-151 (349)
388 PRK03992 proteasome-activating 91.6 1.4 3.1E-05 46.2 10.7 20 54-73 166-185 (389)
389 TIGR02639 ClpA ATP-dependent C 91.6 1.2 2.5E-05 51.0 10.7 18 54-71 204-221 (731)
390 TIGR00665 DnaB replicative DNA 91.5 0.96 2.1E-05 48.2 9.6 145 54-203 196-355 (434)
391 PRK08506 replicative DNA helic 91.5 0.87 1.9E-05 49.1 9.1 154 44-202 179-351 (472)
392 PTZ00361 26 proteosome regulat 91.5 1.3 2.7E-05 47.2 10.1 22 53-74 217-238 (438)
393 cd01128 rho_factor Transcripti 91.4 1.1 2.5E-05 43.8 9.1 20 51-70 14-33 (249)
394 COG1200 RecG RecG-like helicas 91.3 1.3 2.7E-05 48.8 10.1 76 257-332 310-390 (677)
395 PF10593 Z1: Z1 domain; Inter 91.3 1.4 3E-05 42.9 9.5 89 282-375 110-203 (239)
396 PRK06620 hypothetical protein; 91.3 0.7 1.5E-05 44.2 7.4 18 54-71 45-62 (214)
397 TIGR02767 TraG-Ti Ti-type conj 91.3 0.26 5.6E-06 54.7 4.9 57 54-110 212-270 (623)
398 PHA03333 putative ATPase subun 91.3 5 0.00011 44.6 14.4 144 49-207 183-336 (752)
399 cd03115 SRP The signal recogni 91.2 7.6 0.00016 35.4 14.0 49 157-209 81-130 (173)
400 TIGR00678 holB DNA polymerase 91.2 2.3 5E-05 39.5 10.7 41 156-202 94-134 (188)
401 PRK11054 helD DNA helicase IV; 91.1 0.66 1.4E-05 52.3 8.0 62 37-100 195-263 (684)
402 COG0470 HolB ATPase involved i 91.1 0.82 1.8E-05 46.3 8.2 45 157-207 108-152 (325)
403 TIGR01073 pcrA ATP-dependent D 91.0 0.37 8.1E-06 55.0 6.1 63 37-101 3-72 (726)
404 PRK14701 reverse gyrase; Provi 91.0 1.3 2.7E-05 54.7 10.8 62 257-318 121-188 (1638)
405 PRK07004 replicative DNA helic 90.9 1.5 3.3E-05 47.0 10.3 145 54-202 214-373 (460)
406 PRK00080 ruvB Holliday junctio 90.9 0.93 2E-05 46.4 8.4 19 54-72 52-70 (328)
407 PRK08699 DNA polymerase III su 90.9 1.3 2.8E-05 45.2 9.4 33 39-71 2-39 (325)
408 TIGR02782 TrbB_P P-type conjug 90.9 0.74 1.6E-05 46.5 7.4 52 39-90 117-174 (299)
409 PRK13894 conjugal transfer ATP 90.8 0.48 1.1E-05 48.2 6.1 52 39-90 133-190 (319)
410 COG4962 CpaF Flp pilus assembl 90.7 0.58 1.3E-05 47.4 6.3 57 34-90 153-212 (355)
411 cd00983 recA RecA is a bacter 90.7 1.2 2.6E-05 45.4 8.6 55 46-103 42-105 (325)
412 TIGR02785 addA_Gpos recombinat 90.6 0.65 1.4E-05 56.1 7.9 61 38-100 1-67 (1232)
413 KOG0734 AAA+-type ATPase conta 90.6 2.5 5.5E-05 45.2 11.0 63 147-209 385-453 (752)
414 TIGR02640 gas_vesic_GvpN gas v 90.5 0.47 1E-05 46.9 5.6 41 44-84 12-52 (262)
415 TIGR00767 rho transcription te 90.5 1.4 3E-05 46.0 9.1 21 52-72 167-187 (415)
416 TIGR02397 dnaX_nterm DNA polym 90.5 2.1 4.5E-05 44.1 10.7 17 54-70 37-53 (355)
417 PF01443 Viral_helicase1: Vira 90.5 0.46 9.9E-06 45.7 5.4 37 56-93 1-37 (234)
418 PRK13876 conjugal transfer cou 90.5 0.26 5.5E-06 55.1 4.0 55 54-109 145-200 (663)
419 PRK05986 cob(I)alamin adenolsy 90.5 1.8 4E-05 40.4 9.0 136 52-209 21-163 (191)
420 COG0513 SrmB Superfamily II DN 90.3 1.2 2.5E-05 48.7 8.8 68 261-332 102-180 (513)
421 TIGR03880 KaiC_arch_3 KaiC dom 90.2 3 6.4E-05 40.0 10.8 51 53-104 16-69 (224)
422 KOG0742 AAA+-type ATPase [Post 90.1 1.1 2.3E-05 46.3 7.7 17 54-70 385-401 (630)
423 KOG0738 AAA+-type ATPase [Post 90.1 2.5 5.4E-05 43.5 10.1 17 54-70 246-262 (491)
424 PRK06749 replicative DNA helic 90.0 2.6 5.7E-05 44.8 11.0 32 55-86 188-222 (428)
425 TIGR03499 FlhF flagellar biosy 90.0 1.6 3.4E-05 43.7 8.9 17 54-70 195-211 (282)
426 TIGR02012 tigrfam_recA protein 90.0 1.4 3.1E-05 44.7 8.5 96 46-171 42-146 (321)
427 KOG2543 Origin recognition com 89.9 1.5 3.3E-05 44.9 8.5 152 39-223 10-175 (438)
428 TIGR00708 cobA cob(I)alamin ad 89.9 1.8 3.9E-05 39.8 8.3 55 151-208 90-144 (173)
429 PRK13851 type IV secretion sys 89.8 0.5 1.1E-05 48.6 5.2 42 50-91 159-202 (344)
430 KOG1513 Nuclear helicase MOP-3 89.8 0.45 9.7E-06 52.6 4.9 74 301-374 850-934 (1300)
431 TIGR03346 chaperone_ClpB ATP-d 89.8 2.5 5.5E-05 49.1 11.5 18 54-71 195-212 (852)
432 COG3267 ExeA Type II secretory 89.7 2.7 5.9E-05 40.8 9.7 36 51-86 48-86 (269)
433 PRK14971 DNA polymerase III su 89.7 1.7 3.7E-05 48.4 9.7 48 156-209 119-166 (614)
434 PF13671 AAA_33: AAA domain; P 89.6 2.7 5.9E-05 36.8 9.3 16 56-71 2-17 (143)
435 KOG1513 Nuclear helicase MOP-3 89.6 0.26 5.7E-06 54.3 3.0 162 38-204 264-455 (1300)
436 TIGR01242 26Sp45 26S proteasom 89.5 0.67 1.4E-05 48.2 6.0 21 54-74 157-177 (364)
437 COG2804 PulE Type II secretory 89.4 0.68 1.5E-05 49.2 5.9 31 39-69 242-274 (500)
438 PRK14954 DNA polymerase III su 89.3 1.7 3.7E-05 48.3 9.3 42 156-203 125-166 (620)
439 KOG0729 26S proteasome regulat 89.3 11 0.00025 36.8 13.4 77 14-92 173-249 (435)
440 COG0593 DnaA ATPase involved i 89.3 3.8 8.3E-05 42.9 11.2 17 53-69 113-129 (408)
441 PRK09087 hypothetical protein; 89.2 3.3 7.2E-05 39.9 10.2 18 54-71 45-62 (226)
442 PRK13900 type IV secretion sys 89.2 0.55 1.2E-05 48.1 5.0 40 51-90 158-199 (332)
443 cd01130 VirB11-like_ATPase Typ 89.1 0.54 1.2E-05 43.8 4.5 34 37-70 8-42 (186)
444 COG2805 PilT Tfp pilus assembl 89.1 0.31 6.8E-06 48.2 2.9 22 56-77 128-151 (353)
445 KOG0733 Nuclear AAA ATPase (VC 89.1 3.5 7.5E-05 44.9 10.8 58 12-70 505-562 (802)
446 cd00561 CobA_CobO_BtuR ATP:cor 89.1 7 0.00015 35.4 11.4 54 151-207 88-141 (159)
447 KOG0991 Replication factor C, 89.0 0.97 2.1E-05 43.2 6.0 21 54-74 49-69 (333)
448 PRK10865 protein disaggregatio 88.9 2.9 6.2E-05 48.6 11.1 18 54-71 200-217 (857)
449 cd00268 DEADc DEAD-box helicas 88.7 3.1 6.7E-05 38.9 9.5 72 257-332 68-149 (203)
450 KOG0347 RNA helicase [RNA proc 88.6 1.2 2.6E-05 47.5 7.0 57 256-316 261-321 (731)
451 PRK06647 DNA polymerase III su 88.5 3.2 6.9E-05 45.8 10.6 42 156-203 117-158 (563)
452 PRK08058 DNA polymerase III su 88.4 2.1 4.6E-05 43.8 8.6 48 156-209 108-155 (329)
453 TIGR00602 rad24 checkpoint pro 88.3 2.6 5.7E-05 46.9 9.8 18 55-72 112-129 (637)
454 TIGR03345 VI_ClpV1 type VI sec 88.2 3.4 7.3E-05 48.0 11.0 30 42-71 570-614 (852)
455 PRK09376 rho transcription ter 88.1 3 6.6E-05 43.4 9.4 19 52-70 168-186 (416)
456 PRK07773 replicative DNA helic 88.0 1.8 4E-05 50.5 8.8 156 44-203 204-377 (886)
457 TIGR02237 recomb_radB DNA repa 88.0 2.7 5.8E-05 39.7 8.6 35 53-87 12-49 (209)
458 KOG0740 AAA+-type ATPase [Post 87.9 3.1 6.6E-05 43.7 9.4 64 150-213 237-308 (428)
459 PRK14970 DNA polymerase III su 87.9 3 6.4E-05 43.4 9.6 18 54-71 40-57 (367)
460 PF01637 Arch_ATPase: Archaeal 87.7 2.4 5.2E-05 40.2 8.3 17 53-69 20-36 (234)
461 CHL00195 ycf46 Ycf46; Provisio 87.6 3.5 7.5E-05 44.6 10.0 19 54-72 260-278 (489)
462 PRK13880 conjugal transfer cou 87.5 0.4 8.6E-06 53.6 2.9 56 54-109 176-233 (636)
463 PF05729 NACHT: NACHT domain 87.5 2.8 6.1E-05 37.4 8.2 16 55-70 2-17 (166)
464 PRK07471 DNA polymerase III su 87.5 4.7 0.0001 41.9 10.6 43 157-205 140-182 (365)
465 cd01129 PulE-GspE PulE/GspE Th 87.5 1.3 2.7E-05 43.9 6.2 31 39-69 64-96 (264)
466 PRK10733 hflB ATP-dependent me 87.5 3.4 7.3E-05 46.5 10.2 21 54-74 186-206 (644)
467 TIGR02238 recomb_DMC1 meiotic 87.5 2.2 4.8E-05 43.3 8.1 43 46-88 84-140 (313)
468 PRK09302 circadian clock prote 87.4 4.7 0.0001 44.0 11.1 108 46-171 261-376 (509)
469 PF05673 DUF815: Protein of un 87.4 8.8 0.00019 37.3 11.5 96 42-137 34-147 (249)
470 COG1223 Predicted ATPase (AAA+ 87.3 5.7 0.00012 38.8 10.0 38 54-93 152-190 (368)
471 PLN03187 meiotic recombination 87.2 1.9 4.1E-05 44.3 7.4 41 47-87 115-169 (344)
472 COG3973 Superfamily I DNA and 87.1 1.9 4.1E-05 46.7 7.4 87 21-108 189-290 (747)
473 PRK11634 ATP-dependent RNA hel 87.1 2.5 5.5E-05 47.3 8.9 71 258-332 74-155 (629)
474 TIGR00416 sms DNA repair prote 87.1 5 0.00011 43.0 10.8 58 45-103 81-146 (454)
475 PF00437 T2SE: Type II/IV secr 86.9 0.66 1.4E-05 46.0 3.8 39 52-90 126-167 (270)
476 COG1435 Tdk Thymidine kinase [ 86.8 1.3 2.8E-05 41.3 5.3 35 55-89 6-43 (201)
477 PRK06305 DNA polymerase III su 86.6 4.6 9.9E-05 43.3 10.2 40 157-202 120-159 (451)
478 PRK08451 DNA polymerase III su 86.5 3.6 7.8E-05 44.8 9.4 42 157-204 116-157 (535)
479 TIGR01054 rgy reverse gyrase. 86.3 1.7 3.6E-05 52.1 7.3 76 258-333 121-206 (1171)
480 TIGR00614 recQ_fam ATP-depende 86.3 2.3 5.1E-05 45.8 7.9 74 259-332 52-133 (470)
481 COG2812 DnaX DNA polymerase II 86.2 0.93 2E-05 48.9 4.7 44 153-205 114-159 (515)
482 CHL00095 clpC Clp protease ATP 86.1 4.6 9.9E-05 46.8 10.6 18 54-71 201-218 (821)
483 KOG0745 Putative ATP-dependent 85.9 0.8 1.7E-05 47.6 3.7 21 54-74 227-247 (564)
484 COG3421 Uncharacterized protei 85.8 0.82 1.8E-05 49.2 3.9 57 296-352 316-384 (812)
485 TIGR02533 type_II_gspE general 85.8 1.2 2.7E-05 48.0 5.5 31 39-69 226-258 (486)
486 PLN00020 ribulose bisphosphate 85.6 1.4 2.9E-05 45.5 5.2 31 55-85 150-180 (413)
487 KOG0339 ATP-dependent RNA heli 85.5 7.1 0.00015 41.5 10.4 70 258-331 295-375 (731)
488 KOG0733 Nuclear AAA ATPase (VC 85.4 6.6 0.00014 42.9 10.3 18 54-71 224-241 (802)
489 TIGR01420 pilT_fam pilus retra 85.3 3 6.5E-05 43.0 7.9 17 53-69 122-138 (343)
490 PRK10436 hypothetical protein; 85.2 1.8 3.9E-05 46.4 6.3 31 39-69 202-234 (462)
491 PRK04841 transcriptional regul 85.2 13 0.00029 43.4 14.2 41 159-204 122-163 (903)
492 TIGR03345 VI_ClpV1 type VI sec 84.8 6.8 0.00015 45.5 11.1 29 43-71 192-226 (852)
493 PRK07399 DNA polymerase III su 84.6 2.9 6.3E-05 42.5 7.2 47 156-209 122-168 (314)
494 KOG1806 DEAD box containing he 84.5 1.4 3.1E-05 50.1 5.2 67 38-104 738-809 (1320)
495 PF01745 IPT: Isopentenyl tran 84.5 1 2.2E-05 42.7 3.4 28 56-83 4-31 (233)
496 PF01078 Mg_chelatase: Magnesi 84.5 1 2.2E-05 42.5 3.6 24 52-75 21-45 (206)
497 TIGR01547 phage_term_2 phage t 84.4 5.8 0.00013 41.7 9.7 34 56-89 4-43 (396)
498 PF13555 AAA_29: P-loop contai 84.2 0.88 1.9E-05 34.1 2.4 17 53-69 23-39 (62)
499 PRK09519 recA DNA recombinatio 84.2 4.9 0.00011 45.7 9.3 117 25-171 13-151 (790)
500 PF03969 AFG1_ATPase: AFG1-lik 84.1 22 0.00047 36.9 13.5 17 53-69 62-78 (362)
No 1
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-92 Score=690.99 Aligned_cols=429 Identities=39% Similarity=0.717 Sum_probs=396.3
Q ss_pred hhHHHHHHHHHhcCCCCCC-HHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHH
Q 009048 22 EKEALVKLLRWHFGHAQFR-DKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLK 99 (545)
Q Consensus 22 ~~~~l~~~l~~~fg~~~~r-~~Q~~~i~~il~g-~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~ 99 (545)
....+..+|+++||++.|. +.|+.|+..+.++ +||+|+||||+|||+|||||+|..++++||++|+++|++||+++|.
T Consensus 3 ~Er~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~ 82 (641)
T KOG0352|consen 3 MERKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLK 82 (641)
T ss_pred hHHHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHH
Confidence 3467889999999999996 8999999999977 5999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHH
Q 009048 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (545)
Q Consensus 100 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~ 179 (545)
.+.+++..+++..+..++..+..++....+.+++||+|||+.+|.+|...|+.+.+.+.+.++|||||||+++|||||||
T Consensus 83 ~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRP 162 (641)
T KOG0352|consen 83 RLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRP 162 (641)
T ss_pred hcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCe-EEeccCCCCcceeeeecccchhhHHHHHHHHHHhC--
Q 009048 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-- 256 (545)
Q Consensus 180 ~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~-~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~-- 256 (545)
+|.+|+.|++.++++|+++||||+++.|.+||...|.+.+|+ ++.++..|.|++|.+.++....+.+..|.++....
T Consensus 163 DYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG 242 (641)
T KOG0352|consen 163 DYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLG 242 (641)
T ss_pred chhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999997 67888899999999999998888888888876331
Q ss_pred -----------CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccC
Q 009048 257 -----------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325 (545)
Q Consensus 257 -----------~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p 325 (545)
-.+++||||+||++|++++-.|...|+++..||+|+...+|..+++.|++++++||+||..||||||+|
T Consensus 243 ~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp 322 (641)
T KOG0352|consen 243 KHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKP 322 (641)
T ss_pred ChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCc
Confidence 146899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHH
Q 009048 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDY 405 (545)
Q Consensus 326 ~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (545)
+||+||||++|.++..|||++|||||||.+++|.+||+..|...+.++++....+.. .....+...+..+..|++|++|
T Consensus 323 ~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklr-ek~~ke~~~k~~I~~F~k~~eF 401 (641)
T KOG0352|consen 323 DVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLR-EKAKKEMQIKSIITGFAKMLEF 401 (641)
T ss_pred ceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHHH-HhcchhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987654321 2223344556678889999999
Q ss_pred hhcccchHHHHhhhhCCCCCcCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 009048 406 CEGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELTSAV 453 (545)
Q Consensus 406 ~~~~~Crr~~~l~~f~~~~~~~~c~~~Cd~C~~~~~~~~~~~~~~~~~ 453 (545)
||...|||+.|.+|||+..+ +|..+||.|+.|....+.++.+...+
T Consensus 402 CE~~~CRH~~ia~fFgD~~p--~ckg~cd~c~~p~k~~r~~e~f~~s~ 447 (641)
T KOG0352|consen 402 CESARCRHVSIASFFDDTEC--PCKTNCDYCRDPTKTIRNVEAFINSE 447 (641)
T ss_pred HHHcccchHHHHHhcCCCCC--CCCCCccccCCHHHHHHHHHHHHHhh
Confidence 99999999999999999876 58889999998877666666666544
No 2
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-88 Score=713.23 Aligned_cols=401 Identities=45% Similarity=0.811 Sum_probs=369.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcCC
Q 009048 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (545)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi 103 (545)
+.+...|+++||++.||+.|.++|+++++|+|+|+++|||+|||+|||+|++...|.+|||+|+++||+||+++++..|+
T Consensus 3 ~~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi 82 (590)
T COG0514 3 EEAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGI 82 (590)
T ss_pred hHHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCc
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHH
Q 009048 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (545)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~ 183 (545)
.+.+++|..+..++..+...+..+. ++++|.+||.+.++.|+..+.. ..+.++|||||||+++|||||||+|.+
T Consensus 83 ~A~~lnS~l~~~e~~~v~~~l~~g~--~klLyisPErl~~~~f~~~L~~----~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 83 RAAYLNSTLSREERQQVLNQLKSGQ--LKLLYISPERLMSPRFLELLKR----LPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred eeehhhcccCHHHHHHHHHHHhcCc--eeEEEECchhhcChHHHHHHHh----CCCceEEechHHHHhhcCCccCHhHHH
Confidence 9999999999999999999998875 9999999999999998888773 449999999999999999999999999
Q ss_pred HHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHHhCCCccEEE
Q 009048 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263 (545)
Q Consensus 184 l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~II 263 (545)
++.++..+|++|+++||||+++.+..||.+.|++..+.++..+++|||++|.++.+......+..+.+ +.....+++||
T Consensus 157 lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GII 235 (590)
T COG0514 157 LGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGII 235 (590)
T ss_pred HHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999988643444443332 22456678999
Q ss_pred EecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHH
Q 009048 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 343 (545)
Q Consensus 264 f~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~ 343 (545)
||.|++.++.+++.|...|+.+..|||||+.++|..++++|..++++|+|||.|||||||+||||+||||++|.|+++||
T Consensus 236 Yc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYy 315 (590)
T COG0514 236 YCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYY 315 (590)
T ss_pred EEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhhcccchHHHHhhhhCCC
Q 009048 344 QESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423 (545)
Q Consensus 344 Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~~l~~f~~~ 423 (545)
|++|||||||.++.|+++|++.|....++++....+ ..+..+.....+.+|..||++..|||..+++||||.
T Consensus 316 QE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~--------~~~~~~~~~~kl~~~~~~~e~~~crr~~ll~yfge~ 387 (590)
T COG0514 316 QETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKP--------DEEQKQIELAKLRQMIAYCETQTCRRLVLLKYFGED 387 (590)
T ss_pred HHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHHhcccccchHHHHHHhcCcc
Confidence 999999999999999999999999999888876543 234456677889999999999999999999999998
Q ss_pred CCcCCCCCCCCCCCChHH
Q 009048 424 IPVSLCKNSCDACKHPNL 441 (545)
Q Consensus 424 ~~~~~c~~~Cd~C~~~~~ 441 (545)
.+..|.. ||+|..+..
T Consensus 388 -~~~~c~~-c~~c~~~~~ 403 (590)
T COG0514 388 -EPEPCGN-CDNCLDTPK 403 (590)
T ss_pred -ccccccC-CCcccCcch
Confidence 6678985 999988654
No 3
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=7.4e-82 Score=695.85 Aligned_cols=421 Identities=41% Similarity=0.725 Sum_probs=374.1
Q ss_pred CCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHH
Q 009048 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (545)
Q Consensus 19 ~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l 98 (545)
++++.+.+...++++||+..|||.|.++|++++.|+|++++||||+|||+||++|++...+.+|||+|+++||+||+..+
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L 520 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNL 520 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCC
Q 009048 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 177 (545)
Q Consensus 99 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~f 177 (545)
...|+.+..++++........+...+......++|+|+|||.+.... ++..+..+.....+.+||||||||+++|||+|
T Consensus 521 ~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDF 600 (1195)
T PLN03137 521 LQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDF 600 (1195)
T ss_pred HhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccch
Confidence 99999999999999888887777777664556999999999988754 45555555556678999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHHhC-
Q 009048 178 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN- 256 (545)
Q Consensus 178 r~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~- 256 (545)
||+|..|..++..+|++|+++||||+++.+..++...|++.++.++..+++|||+.|.+..+. ......+..++...
T Consensus 601 RpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~--kk~le~L~~~I~~~~ 678 (1195)
T PLN03137 601 RPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT--KKCLEDIDKFIKENH 678 (1195)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc--hhHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999888654 23345677777543
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p 336 (545)
.+.++||||+|++.|+.++..|...|+.+..|||+|++++|..++++|.+|+++|||||++||||||+|+|++||||++|
T Consensus 679 ~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlP 758 (1195)
T PLN03137 679 FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 758 (1195)
T ss_pred cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcccCCCC------ccchhhhhhHHHHHHHHHHHHHhhcc-
Q 009048 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ------SFSTRERSSKKSISDFSQMVDYCEGS- 409 (545)
Q Consensus 337 ~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~- 409 (545)
+|++.|+||+|||||+|.+|.|++||++.|...++.++......... ..++.....+...+.+.+|+.||++.
T Consensus 759 kSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~ 838 (1195)
T PLN03137 759 KSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEV 838 (1195)
T ss_pred CCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChH
Confidence 99999999999999999999999999999999999988754322110 01111223455677899999999996
Q ss_pred cchHHHHhhhhCCCCCcCCCCCCCCCCCChHH
Q 009048 410 GCRRKKILESFGEQIPVSLCKNSCDACKHPNL 441 (545)
Q Consensus 410 ~Crr~~~l~~f~~~~~~~~c~~~Cd~C~~~~~ 441 (545)
.|||+.+|.||||.+....|+..||+|..+..
T Consensus 839 ~CRR~~lL~yFGE~~~~~~C~~~CDnC~~~~~ 870 (1195)
T PLN03137 839 DCRRFLQLVHFGEKFDSTNCKKTCDNCSSSKS 870 (1195)
T ss_pred hhHHHHHHHHcccccCccCCCCCCCCCCCCCc
Confidence 99999999999999766679888999987543
No 4
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=5.9e-83 Score=705.86 Aligned_cols=504 Identities=44% Similarity=0.705 Sum_probs=428.5
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcC
Q 009048 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (545)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~g 102 (545)
.++....|+..||+..||+.|.++|.+++.|+|++|.||||+|||+|||+|++..++.+|||+|+++||+||+..|...+
T Consensus 249 t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~ 328 (941)
T KOG0351|consen 249 TKELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKG 328 (941)
T ss_pred chHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcC
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHH
Q 009048 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (545)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~ 181 (545)
|++.++++.++...+..++..+..+.+.++|+|+|||.+...+ +...+..+...+.+.++|||||||+++|||||||+|
T Consensus 329 I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Y 408 (941)
T KOG0351|consen 329 IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSY 408 (941)
T ss_pred cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHH
Confidence 9999999999999999999999999889999999999887755 455667777778899999999999999999999999
Q ss_pred HHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHHhCCCccE
Q 009048 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261 (545)
Q Consensus 182 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~ 261 (545)
.+++.++..+|.+|+|+||||+++.++.||++.|++.++.++..+++|+|++|.|.++......+..+...-..++..++
T Consensus 409 k~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~ 488 (941)
T KOG0351|consen 409 KRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSG 488 (941)
T ss_pred HHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999987533334444444445678899
Q ss_pred EEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHH
Q 009048 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEA 341 (545)
Q Consensus 262 IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~ 341 (545)
||||.++++|++++..|+..|+++..||+||++.+|..++..|..++++|+|||.|||||||+||||+||||++|+|++.
T Consensus 489 IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~ 568 (941)
T KOG0351|consen 489 IIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEG 568 (941)
T ss_pred EEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcccCCCCccchhhhhhH-HHHHHHHHHHHHhh-cccchHHHHhhh
Q 009048 342 FYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK-KSISDFSQMVDYCE-GSGCRRKKILES 419 (545)
Q Consensus 342 y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~Crr~~~l~~ 419 (545)
|||++|||||||.++.|++||++.|...++.++....... ...+ ....++.+|+.||+ .+.|||+.++.|
T Consensus 569 YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~~~--------~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~ 640 (941)
T KOG0351|consen 569 YYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNRLS--------GVKKFTRLLELVQVVTYCENETDCRRKQILEY 640 (941)
T ss_pred HHHhccccCcCCCcceeEEecchhHHHHHHHHHHcccccc--------chhhccchhhHHHHHHhhcCccchhHHHHHHh
Confidence 9999999999999999999999999999999998772111 1112 45678899999999 579999999999
Q ss_pred hCCCCCcCCCC--CCCCCCCChHHHHHHHHHHHHhhhccCCcceeecccccccCCCCcccccccccccCCCccccCCCch
Q 009048 420 FGEQIPVSLCK--NSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFISSQDMTDGGQYSEFWNRDDEASGSEEDISDCDD 497 (545)
Q Consensus 420 f~~~~~~~~c~--~~Cd~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (545)
||+.+....|. .+||+|..+..+.-.+.+++....+.......+..++..........+|..........+-. .+
T Consensus 641 fge~f~~~~c~~~k~cd~C~~~~dv~~~~~d~~~~~~~~~~~v~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~---~~ 717 (941)
T KOG0351|consen 641 FGEEFDSKHCKKHKTCDNCRESLDVAYELRDVTLTALDAHPLVTIYTLSERFTLAAIEDVGGGTLIQKAAKAEPL---HD 717 (941)
T ss_pred cccccchhhccCCchHHHhhcccccchHHHHHHHHHHHHhhhheeeeccchhhhhhHHhcccccHhHHHHHhcCc---cc
Confidence 99999888999 79999999875555555555444434333344443333333334566777666554444432 33
Q ss_pred hHHHHhhhhccccccccCchHHHHHHHHHHHHHhhhccch
Q 009048 498 GIEAVKKVANSKLSTKAGLNERINFLQHAEESYYRNKISD 537 (545)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (545)
+.+.....-...+++..++..++...-..||.+|-|.+.+
T Consensus 718 ~~~~~g~~~~~~~~~~~r~~~~Lv~~~~~~E~~~~~~~~~ 757 (941)
T KOG0351|consen 718 GLPAHGKGKGQSTSDAERLLRKLVAEGFIEEYDSANSSYQ 757 (941)
T ss_pred cccccCcccccccchHHHHHHHHHhhhhHHHhhhhhhhhh
Confidence 4444444444456667778888888888888766654433
No 5
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.4e-78 Score=585.54 Aligned_cols=406 Identities=41% Similarity=0.762 Sum_probs=380.2
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHH
Q 009048 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97 (545)
Q Consensus 18 ~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~ 97 (545)
..++++++..+.|++.|.+..|||.|..+|++.+.|+|+++++|||+|||+||++|++...|.+|||+|+++||+||+..
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~ 153 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQ 153 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccC-hhhHHHHHhhhccCCccEEEEeccccccccCCC
Q 009048 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (545)
Q Consensus 98 l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t-~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~ 176 (545)
|+.+||.+..++...+..+...+...+......++++|+|||.++. ..|++++.+....+.+.+|.|||+||.++||||
T Consensus 154 lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghd 233 (695)
T KOG0353|consen 154 LKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHD 233 (695)
T ss_pred HHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcc
Confidence 9999999999999999998888888888888889999999998875 458889999888999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccch-hhHHHHHHHHHHh
Q 009048 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL-DDAYADLCSVLKA 255 (545)
Q Consensus 177 fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~-~~~~~~l~~~l~~ 255 (545)
|||+|..|+-+.+.||+.|+++||||++..+..|....|++.....++.+|+|||++|.|+.++.. ++.++.+..+++.
T Consensus 234 fr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~ 313 (695)
T KOG0353|consen 234 FRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKG 313 (695)
T ss_pred cCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999988754 5567788887754
Q ss_pred -CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeC
Q 009048 256 -NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (545)
Q Consensus 256 -~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~ 334 (545)
..+..+||||-+++.|++++..|+.+|+.+..||+.|.+++|.-+.+.|..|+++|+|||.+||||||+|+||+|||..
T Consensus 314 ~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 314 DFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred ccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecc
Confidence 4577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHH-------------------------------------------HHhhccCCCCCCeEEEEeccccHHHHH
Q 009048 335 IPKSMEAFYQ-------------------------------------------ESGRAGRDQLPSKSLLYYGMDDRRRME 371 (545)
Q Consensus 335 ~p~s~~~y~Q-------------------------------------------r~GRagR~g~~~~~i~~~~~~d~~~~~ 371 (545)
+|+|++.||| ++||||||+.++.|++||...|..++.
T Consensus 394 l~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~s 473 (695)
T KOG0353|consen 394 LPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKIS 473 (695)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHH
Confidence 9999999999 899999999999999999999988776
Q ss_pred HHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhhc-ccchHHHHhhhhCCCCCcCCCCCCCCCCCC
Q 009048 372 FILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNSCDACKH 438 (545)
Q Consensus 372 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Crr~~~l~~f~~~~~~~~c~~~Cd~C~~ 438 (545)
.+.... ...++.+..|+.||.. ..|||..+.+||+|.+.+..|+.+||+|..
T Consensus 474 smv~~e---------------~~g~q~ly~mv~y~~d~s~crrv~laehfde~w~~~~c~k~cd~c~~ 526 (695)
T KOG0353|consen 474 SMVQME---------------NTGIQKLYEMVRYAADISKCRRVKLAEHFDEAWEPEACNKMCDNCCK 526 (695)
T ss_pred HHHHHH---------------hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCHHHHHHHhhhhcc
Confidence 665432 3456788999999987 689999999999999999999999999965
No 6
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.1e-73 Score=626.73 Aligned_cols=403 Identities=42% Similarity=0.736 Sum_probs=359.9
Q ss_pred CCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHH
Q 009048 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (545)
Q Consensus 19 ~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l 98 (545)
.++..+.....|++.|||++|||+|.++|+++++|+|++++||||+|||+||++|++...+.+|||+|+++|+.||++.+
T Consensus 6 ~~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l 85 (607)
T PRK11057 6 VLNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQL 85 (607)
T ss_pred cCCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHH
Confidence 34555667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCH
Q 009048 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (545)
Q Consensus 99 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (545)
+.+|+.+..+++.............+..+ .++++|+|||.+.+..+...+.. ..+++||||||||+++||++||
T Consensus 86 ~~~gi~~~~~~s~~~~~~~~~~~~~~~~g--~~~il~~tPe~l~~~~~~~~l~~----~~l~~iVIDEaH~i~~~G~~fr 159 (607)
T PRK11057 86 LANGVAAACLNSTQTREQQLEVMAGCRTG--QIKLLYIAPERLMMDNFLEHLAH----WNPALLAVDEAHCISQWGHDFR 159 (607)
T ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHHhCC--CCcEEEEChHHhcChHHHHHHhh----CCCCEEEEeCccccccccCccc
Confidence 99999999999988887776666666655 48899999999988776655542 3589999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHHhCCC
Q 009048 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (545)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~ 258 (545)
|.|..|..++..+|+.|+++||||+++.+..++...+++.+|.++..+++++|+.|.+.... .....+..++....+
T Consensus 160 ~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~ 236 (607)
T PRK11057 160 PEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKF---KPLDQLMRYVQEQRG 236 (607)
T ss_pred HHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeecc---chHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999988876543 345567777777777
Q ss_pred ccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCC
Q 009048 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKS 338 (545)
Q Consensus 259 ~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s 338 (545)
.++||||+|++.|+.++..|.+.|+.+..|||+|++++|..+++.|.+|+++|||||++++||||+|+|++||||++|.|
T Consensus 237 ~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s 316 (607)
T PRK11057 237 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRN 316 (607)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhhcccchHHHHhh
Q 009048 339 MEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILE 418 (545)
Q Consensus 339 ~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~~l~ 418 (545)
++.|+||+|||||+|.+|.|++||++.|...++.++..... ..........+..|..||++..|||+.+++
T Consensus 317 ~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~Crr~~~l~ 387 (607)
T PRK11057 317 IESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPA---------GQQQDIERHKLNAMGAFAEAQTCRRLVLLN 387 (607)
T ss_pred HHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 99999999999999999999999999999988888764321 111233445788999999999999999999
Q ss_pred hhCCCCCcCCCCCCCCCCCChHH
Q 009048 419 SFGEQIPVSLCKNSCDACKHPNL 441 (545)
Q Consensus 419 ~f~~~~~~~~c~~~Cd~C~~~~~ 441 (545)
||||... ..|+ .||+|..+..
T Consensus 388 yf~e~~~-~~c~-~cd~c~~~~~ 408 (607)
T PRK11057 388 YFGEGRQ-EPCG-NCDICLDPPK 408 (607)
T ss_pred HhCCCCC-CCCC-CCCCCCCccc
Confidence 9999864 3576 7999998653
No 7
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.3e-73 Score=627.47 Aligned_cols=395 Identities=42% Similarity=0.743 Sum_probs=357.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCcee
Q 009048 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (545)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~ 106 (545)
...|++.|||++|||+|.++|++++.|+|++++||||+|||+||++|++...+.++||+|+++||.||++.++.+|+.+.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH
Q 009048 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (545)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (545)
.+++.........+...+..+. ++++|+|||.+.++.+...+. ...+++||||||||+++||++|||.|..+..
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~--~~il~~tpe~l~~~~~~~~l~----~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGE--LKLLYVAPERLEQDYFLNMLQ----RIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCC--CCEEEEChhHhcChHHHHHHh----cCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 9999998888877777776654 889999999998877655443 3459999999999999999999999999999
Q ss_pred HHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHHhCCCccEEEEec
Q 009048 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266 (545)
Q Consensus 187 l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~ 266 (545)
++..+|+.|+++||||+++.+..++...+++.++.++..+++++|+.|.+.... ++...+.+++....+.++||||+
T Consensus 156 l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~~~~IIf~~ 232 (591)
T TIGR01389 156 LAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKN---NKQKFLLDYLKKHRGQSGIIYAS 232 (591)
T ss_pred HHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCC---CHHHHHHHHHHhcCCCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999887653 45566777777766778999999
Q ss_pred chhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHH
Q 009048 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (545)
Q Consensus 267 t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~ 346 (545)
|++.|+.+++.|...|+++..|||+|+.++|..+++.|.+|+++|||||++|+||||+|+|++|||+++|.|++.|+||+
T Consensus 233 sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~ 312 (591)
T TIGR01389 233 SRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEA 312 (591)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCeEEEEeccccHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhhcccchHHHHhhhhCCCCCc
Q 009048 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPV 426 (545)
Q Consensus 347 GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~~l~~f~~~~~~ 426 (545)
|||||+|.++.|+++|++.|...++.++...... +.........+.+|..||++..|||+.+++|||+.. .
T Consensus 313 GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~c~r~~~~~~f~~~~-~ 383 (591)
T TIGR01389 313 GRAGRDGLPAEAILLYSPADIALLKRRIEQSEAD--------DDYKQIEREKLRAMIAYCETQTCRRAYILRYFGENE-V 383 (591)
T ss_pred ccccCCCCCceEEEecCHHHHHHHHHHHhccCCc--------HHHHHHHHHHHHHHHHHHcccccHhHHHHHhcCCCC-C
Confidence 9999999999999999999999998888654221 122234456788999999999999999999999874 3
Q ss_pred CCCCCCCCCCCChH
Q 009048 427 SLCKNSCDACKHPN 440 (545)
Q Consensus 427 ~~c~~~Cd~C~~~~ 440 (545)
..|+ .||+|..+.
T Consensus 384 ~~c~-~cd~c~~~~ 396 (591)
T TIGR01389 384 EPCG-NCDNCLDPP 396 (591)
T ss_pred CCCC-CCCCCCCCC
Confidence 4687 799998754
No 8
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.6e-73 Score=608.28 Aligned_cols=394 Identities=46% Similarity=0.820 Sum_probs=348.7
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEe
Q 009048 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (545)
Q Consensus 29 ~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~ 108 (545)
.|++.|||++|||+|.++|+++++|+|++++||||+|||+||++|++...+.+|||+||++|+.||++.++.+|+.+..+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHhhhcCCCCccEEEECcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 009048 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (545)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l 187 (545)
++.........+...+..+ .++++|+|||.+.+.. +...+. ....+++|||||||++++||++||+.|..+..+
T Consensus 82 ~~~~~~~~~~~i~~~~~~~--~~~il~~TPe~l~~~~~~~~~l~---~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDG--KIKLLYVTPEKCSASNRLLQTLE---ERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred eCCCCHHHHHHHHHHHhcC--CCCEEEECHHHHcCchhHHHHHH---hcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 9988888777777777554 4889999999988765 444442 456699999999999999999999999999999
Q ss_pred HHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHH-hCCCccEEEEec
Q 009048 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-ANGDTCAIVYCL 266 (545)
Q Consensus 188 ~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~-~~~~~~~IIf~~ 266 (545)
+..+|++|+++||||+++.+..++...+++..+.++..+++++|+.+.+..... +.+..+..++. ..++.++||||+
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~--~~~~~l~~~l~~~~~~~~~IIF~~ 234 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTP--KILEDLLRFIRKEFKGKSGIIYCP 234 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCc--cHHHHHHHHHHHhcCCCceEEEEC
Confidence 999999999999999999999999999999999999999999999998876642 45666777775 455667799999
Q ss_pred chhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHH
Q 009048 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (545)
Q Consensus 267 t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~ 346 (545)
|++.|+.++..|...|+.+..|||+|++++|..+++.|.+|+++|||||++++||||+|+|++|||+++|.|++.|+||+
T Consensus 235 s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~ 314 (470)
T TIGR00614 235 SRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQES 314 (470)
T ss_pred cHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCeEEEEeccccHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhhcccchHHHHhhhhCCCCC-
Q 009048 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIP- 425 (545)
Q Consensus 347 GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~~l~~f~~~~~- 425 (545)
|||||+|.+|.|++||++.|...++.++...... .........+..|..|++...|||+.+++|||+...
T Consensus 315 GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~crr~~l~~~f~~~~~~ 385 (470)
T TIGR00614 315 GRAGRDGLPSECHLFYAPADINRLRRLLMEEPDG---------QQRTYKLKLYEMMEYCLNSSTCRRLILLSHFGEKQLN 385 (470)
T ss_pred cCcCCCCCCceEEEEechhHHHHHHHHHhcCCch---------hHHHHHHHHHHHHHHHhccccCHHHHHHHHcCCcccc
Confidence 9999999999999999999999999888754321 111223345677888888899999999999999632
Q ss_pred ----cCCCCCCCCCCCC
Q 009048 426 ----VSLCKNSCDACKH 438 (545)
Q Consensus 426 ----~~~c~~~Cd~C~~ 438 (545)
...|..+||+|..
T Consensus 386 ~~~~~~~~~~~C~~C~~ 402 (470)
T TIGR00614 386 KSFGIMGTEKCCDNCCK 402 (470)
T ss_pred cccccccCCCCCCCCCC
Confidence 2346667888764
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.7e-52 Score=439.23 Aligned_cols=342 Identities=20% Similarity=0.254 Sum_probs=272.8
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-------------CCeE
Q 009048 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGIV 81 (545)
Q Consensus 15 ~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-------------~~~~ 81 (545)
..|+.+++++.+.+.|.. +||..|+|+|.++|+.++.|+|++++||||||||++|++|++.. +..+
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 8 QKFSDFALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 467788999999999987 89999999999999999999999999999999999999998731 3579
Q ss_pred EEEcChHHHHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccC
Q 009048 82 LVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (545)
Q Consensus 82 lVi~P~~aL~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~ 157 (545)
|||+||++|+.|+.+.+.. .|+.+..+.++......... +. ...+|+++||+.+...- ........
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l~---~~~~IlV~TP~~l~~~l----~~~~~~l~ 156 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV---LE---SGVDILIGTTGRLIDYA----KQNHINLG 156 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hc---CCCCEEEECHHHHHHHH----HcCCcccc
Confidence 9999999999998887765 36777777766554433222 22 13678888888663211 11233456
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccC---CCCc
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPN 231 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~n 231 (545)
.+++|||||||++.+|| |...+.. +....| ..+.+++|||++..+.......+ .+|..+.... ...+
T Consensus 157 ~v~~lViDEad~l~~~~--f~~~i~~---i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~--~~p~~i~v~~~~~~~~~ 229 (423)
T PRK04837 157 AIQVVVLDEADRMFDLG--FIKDIRW---LFRRMPPANQRLNMLFSATLSYRVRELAFEHM--NNPEYVEVEPEQKTGHR 229 (423)
T ss_pred cccEEEEecHHHHhhcc--cHHHHHH---HHHhCCCccceeEEEEeccCCHHHHHHHHHHC--CCCEEEEEcCCCcCCCc
Confidence 68999999999999998 6555444 444454 34578999999988876554444 4555443221 1122
Q ss_pred ceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 009048 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (545)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (545)
+...+.. ....++...|..++......++||||+++..|+.++..|...|+++..+||++++++|..+++.|++|+++|
T Consensus 230 i~~~~~~-~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~v 308 (423)
T PRK04837 230 IKEELFY-PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDI 308 (423)
T ss_pred eeEEEEe-CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcE
Confidence 3222222 223567777888887766778999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHH
Q 009048 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (545)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~ 375 (545)
||||+++++|||+|+|++||||++|.+.+.|+||+||+||.|+.|.+++|+.+.|...+..+..
T Consensus 309 LVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~ 372 (423)
T PRK04837 309 LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIET 372 (423)
T ss_pred EEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988877776654
No 10
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-52 Score=428.54 Aligned_cols=344 Identities=25% Similarity=0.376 Sum_probs=277.3
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------------CCeE
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIV 81 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~~~~ 81 (545)
...|..++++++....|+. -||+.|+|+|...|+.++.|+|++..|.||||||++|++|++.. .+++
T Consensus 90 ~~~f~~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~v 168 (519)
T KOG0331|consen 90 SAAFQELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIV 168 (519)
T ss_pred chhhhcccccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeE
Confidence 3367788899999999997 69999999999999999999999999999999999999999842 5679
Q ss_pred EEEcChHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhh--hc
Q 009048 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HS 155 (545)
Q Consensus 82 lVi~P~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~--~~ 155 (545)
||++|||+|+.|....+.++ ++...++.++.+....... +..+ ++++ ++||+++..+.+. .+
T Consensus 169 LVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~---l~~g---vdiv------iaTPGRl~d~le~g~~~ 236 (519)
T KOG0331|consen 169 LVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRD---LERG---VDVV------IATPGRLIDLLEEGSLN 236 (519)
T ss_pred EEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHH---HhcC---CcEE------EeCChHHHHHHHcCCcc
Confidence 99999999999988888875 4557778877766554332 2222 5564 4555655555433 34
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC-----C
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-----R 229 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~-----r 229 (545)
+..+.++|+||||+|++.| |++..++| +... -|..+.+++|||++..+..-....+. +|..+..... .
T Consensus 237 l~~v~ylVLDEADrMldmG--Fe~qI~~I--l~~i~~~~rQtlm~saTwp~~v~~lA~~fl~--~~~~i~ig~~~~~~a~ 310 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLDMG--FEPQIRKI--LSQIPRPDRQTLMFSATWPKEVRQLAEDFLN--NPIQINVGNKKELKAN 310 (519)
T ss_pred ccceeEEEeccHHhhhccc--cHHHHHHH--HHhcCCCcccEEEEeeeccHHHHHHHHHHhc--CceEEEecchhhhhhh
Confidence 5579999999999999988 99877776 3333 23447999999999999886666665 6654443322 2
Q ss_pred CcceeeeecccchhhHHHHHHHHHHh---CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc
Q 009048 230 PNLFYEVRYKDLLDDAYADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (545)
Q Consensus 230 ~ni~~~v~~~~~~~~~~~~l~~~l~~---~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (545)
.++...+...+ ...+...|..+|.. ...+++||||+|++.|++|+..|+..++++..+||+.++.+|..+++.|++
T Consensus 311 ~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre 389 (519)
T KOG0331|consen 311 HNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE 389 (519)
T ss_pred cchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc
Confidence 33433333333 34455555555543 356789999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhc
Q 009048 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (545)
Q Consensus 307 g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~ 377 (545)
|+..|||||+++++|+|+|+|++||+||+|.++++|+||+||+||+|+.|.+++|+...+......+.+..
T Consensus 390 G~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 390 GKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred CCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888776665543
No 11
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6.3e-51 Score=441.10 Aligned_cols=345 Identities=23% Similarity=0.315 Sum_probs=269.4
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCeEE
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVL 82 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~~~~l 82 (545)
...|+.+.+++.+.+.|++ +||..|+|+|.++|+.+++|+|++++||||||||++|++|++.. ++.+|
T Consensus 129 ~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~L 207 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSLKN-AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVL 207 (545)
T ss_pred cCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 3456667778999999997 79999999999999999999999999999999999999998742 45799
Q ss_pred EEcChHHHHHHHHHHHHHcC----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHH-HhhhccC
Q 009048 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRG 157 (545)
Q Consensus 83 Vi~P~~aL~~qq~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l-~~~~~~~ 157 (545)
||+||++|+.|+.+.++.++ +....+.++........ .+.. ..+|+++||+.+.. .+ .....+.
T Consensus 208 IL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~---~l~~---~~~IlVaTPgrL~d-----~l~~~~~~l~ 276 (545)
T PTZ00110 208 VLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIY---ALRR---GVEILIACPGRLID-----FLESNVTNLR 276 (545)
T ss_pred EECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHH---HHHc---CCCEEEECHHHHHH-----HHHcCCCChh
Confidence 99999999999999988864 45555555555433222 2222 36788888876532 11 1223345
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccC----CCCcce
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF----NRPNLF 233 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~----~r~ni~ 233 (545)
.+.+|||||||++.+|| |++.+..+.. ...++.+++++|||++..+... ...+....+..+.... ...++.
T Consensus 277 ~v~~lViDEAd~mld~g--f~~~i~~il~--~~~~~~q~l~~SAT~p~~v~~l-~~~l~~~~~v~i~vg~~~l~~~~~i~ 351 (545)
T PTZ00110 277 RVTYLVLDEADRMLDMG--FEPQIRKIVS--QIRPDRQTLMWSATWPKEVQSL-ARDLCKEEPVHVNVGSLDLTACHNIK 351 (545)
T ss_pred hCcEEEeehHHhhhhcc--hHHHHHHHHH--hCCCCCeEEEEEeCCCHHHHHH-HHHHhccCCEEEEECCCccccCCCee
Confidence 68999999999999998 8877666532 2336889999999998876543 3333333454433221 112333
Q ss_pred eeeecccchhhHHHHHHHHHHhC--CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 009048 234 YEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (545)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~--~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (545)
..+.... ..++...|..++... ...++||||++++.|+.++..|...|+++..+||++++++|..+++.|++|+.+|
T Consensus 352 q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~I 430 (545)
T PTZ00110 352 QEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPI 430 (545)
T ss_pred EEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcE
Confidence 3332222 234555666666543 4668999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHh
Q 009048 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (545)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~ 376 (545)
||||+++++|||+|+|++||||++|.+++.|+||+||+||.|..|.|++|+++.|...+..+++.
T Consensus 431 LVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~ 495 (545)
T PTZ00110 431 MIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKV 495 (545)
T ss_pred EEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998776665543
No 12
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-51 Score=401.01 Aligned_cols=353 Identities=22% Similarity=0.294 Sum_probs=288.5
Q ss_pred cccccccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeE
Q 009048 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIV 81 (545)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~ 81 (545)
++..++...|..+...+++.+++++ .||..|+++|.++|+.++.|+|||+.|.||||||.+|++|++.+ ...+
T Consensus 54 ~~~~e~~~sf~dLgv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~ 132 (476)
T KOG0330|consen 54 MQTDESFKSFADLGVHPELLEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFA 132 (476)
T ss_pred hhhhhhhcchhhcCcCHHHHHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceE
Confidence 5567788889999999999999997 79999999999999999999999999999999999999999863 4679
Q ss_pred EEEcChHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHH-H--hhh
Q 009048 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-K--KIH 154 (545)
Q Consensus 82 lVi~P~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l-~--~~~ 154 (545)
+|++|||+|+.|..+.+..+ |+.+..+.++.......... ... ..+ +++|||.+... . +..
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L----~kk--Phi------lVaTPGrL~dhl~~Tkgf 200 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQL----SKK--PHI------LVATPGRLWDHLENTKGF 200 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHh----hcC--CCE------EEeCcHHHHHHHHhccCc
Confidence 99999999999988888875 56777787777665443322 223 344 44556644333 2 233
Q ss_pred ccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCC---
Q 009048 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP--- 230 (545)
Q Consensus 155 ~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~--- 230 (545)
+...++++|+||||++.+. ||.+....| +..+ +..+.+++|||++..+.+ .....+.+|..+..+....
T Consensus 201 ~le~lk~LVlDEADrlLd~--dF~~~ld~I---Lk~ip~erqt~LfsATMt~kv~k--L~rasl~~p~~v~~s~ky~tv~ 273 (476)
T KOG0330|consen 201 SLEQLKFLVLDEADRLLDM--DFEEELDYI---LKVIPRERQTFLFSATMTKKVRK--LQRASLDNPVKVAVSSKYQTVD 273 (476)
T ss_pred cHHHhHHHhhchHHhhhhh--hhHHHHHHH---HHhcCccceEEEEEeecchhhHH--HHhhccCCCeEEeccchhcchH
Confidence 4455889999999999984 587666555 4444 478999999999999987 4466778888776654322
Q ss_pred cceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCc
Q 009048 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (545)
Q Consensus 231 ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (545)
++...+.... ...+-..|..+++...+.++||||+|...++.++-.|+..|+.+..+||.|++..|...++.|++|...
T Consensus 274 ~lkQ~ylfv~-~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~ 352 (476)
T KOG0330|consen 274 HLKQTYLFVP-GKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS 352 (476)
T ss_pred HhhhheEecc-ccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc
Confidence 2221111111 124456677788887788999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcccCC
Q 009048 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (545)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~~~ 381 (545)
|||||+++++|+|+|.|++||+||+|.+..+|+||+||+||.|.+|.++.+++..|.+.+..|+.....+.
T Consensus 353 iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 353 ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999998888877665543
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.2e-50 Score=433.69 Aligned_cols=344 Identities=22% Similarity=0.284 Sum_probs=275.0
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcCh
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~ 87 (545)
+..|+.+++++.+.+.|.. +||..|+|+|.+||+.+++|+|++++||||+|||++|++|++.. ...+||++||
T Consensus 3 ~~~f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Pt 81 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPT 81 (460)
T ss_pred CCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCC
Confidence 3468888899999999987 79999999999999999999999999999999999999999863 2369999999
Q ss_pred HHHHHHHHHHHHHc-----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEE
Q 009048 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (545)
Q Consensus 88 ~aL~~qq~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~i 162 (545)
++|+.|+.+.++.+ ++.+..+.++......... +. ...+|+++||+.+...- . ........+++|
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~---l~---~~~~IvV~Tp~rl~~~l--~--~~~~~l~~l~~l 151 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS---LE---HGAHIIVGTPGRILDHL--R--KGTLDLDALNTL 151 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH---hc---CCCCEEEEChHHHHHHH--H--cCCccHHHCCEE
Confidence 99999999888764 4666667776665443322 22 24678888887653211 0 112234558999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc--CCCCcceeeeecc
Q 009048 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--FNRPNLFYEVRYK 239 (545)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~--~~r~ni~~~v~~~ 239 (545)
|+||||++.++| |.+.+.. +...+| ..+++++|||+++........ .+.+|..+... ...+++...+...
T Consensus 152 ViDEad~~l~~g--~~~~l~~---i~~~~~~~~q~ll~SAT~~~~~~~l~~~--~~~~~~~i~~~~~~~~~~i~~~~~~~ 224 (460)
T PRK11776 152 VLDEADRMLDMG--FQDAIDA---IIRQAPARRQTLLFSATYPEGIAAISQR--FQRDPVEVKVESTHDLPAIEQRFYEV 224 (460)
T ss_pred EEECHHHHhCcC--cHHHHHH---HHHhCCcccEEEEEEecCcHHHHHHHHH--hcCCCEEEEECcCCCCCCeeEEEEEe
Confidence 999999999988 6655544 444454 678999999999887653333 24555544332 2223333322222
Q ss_pred cchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccc
Q 009048 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (545)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~ 319 (545)
. ..++...+..++......++||||+|++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 225 ~-~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~ 303 (460)
T PRK11776 225 S-PDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAA 303 (460)
T ss_pred C-cHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccc
Confidence 2 244777888888877778899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHh
Q 009048 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (545)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~ 376 (545)
+|||+|++++||+|++|.+.+.|+||+||+||.|..|.|++|+.+.|...+..+.+.
T Consensus 304 rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~ 360 (460)
T PRK11776 304 RGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDY 360 (460)
T ss_pred cccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988877766554
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-50 Score=440.48 Aligned_cols=343 Identities=16% Similarity=0.214 Sum_probs=274.8
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-------------CCeEE
Q 009048 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGIVL 82 (545)
Q Consensus 16 ~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-------------~~~~l 82 (545)
.|+.+.+.+.+.+.|.+ +||..|+|+|.++|+.+++|+|+++.||||+|||++|++|++.. ...+|
T Consensus 10 ~f~~l~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 10 TFSSFDLHPALLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred ChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 57888899999999987 89999999999999999999999999999999999999998752 25799
Q ss_pred EEcChHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCC
Q 009048 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL 158 (545)
Q Consensus 83 Vi~P~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~ 158 (545)
||+||++|+.|+.+.++.+ ++.+..+.++........... ...+|+++||+.+...... ........
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~------~~~dIiV~TP~rL~~~l~~---~~~~~l~~ 159 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ------QGVDVIIATPGRLIDYVKQ---HKVVSLHA 159 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh------CCCCEEEECHHHHHHHHHh---ccccchhh
Confidence 9999999999999988875 566677777766654433322 1367888888866431110 01223455
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec---cCCCCcc
Q 009048 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNL 232 (545)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~ni 232 (545)
+++|||||||++.+|| |...+. .+...+| ..+++++|||++..+.......+ ..+..+.. .....++
T Consensus 160 v~~lViDEAh~lld~g--f~~~i~---~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l--~~p~~i~v~~~~~~~~~i 232 (572)
T PRK04537 160 CEICVLDEADRMFDLG--FIKDIR---FLLRRMPERGTRQTLLFSATLSHRVLELAYEHM--NEPEKLVVETETITAARV 232 (572)
T ss_pred eeeeEecCHHHHhhcc--hHHHHH---HHHHhcccccCceEEEEeCCccHHHHHHHHHHh--cCCcEEEeccccccccce
Confidence 8899999999999988 655444 4445555 57899999999998876555544 34432221 1122223
Q ss_pred eeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEE
Q 009048 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (545)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VL 312 (545)
...+.. ....+++..+..++......++||||+|+..++.+++.|...|+.+..|||+|++.+|..+++.|++|+++||
T Consensus 233 ~q~~~~-~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VL 311 (572)
T PRK04537 233 RQRIYF-PADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311 (572)
T ss_pred eEEEEe-cCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 222222 2235567778888877777889999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHh
Q 009048 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (545)
Q Consensus 313 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~ 376 (545)
|||+++++|||+|+|++||||++|.+++.|+||+||+||.|..|.|++|+.+.+...+..+.+.
T Consensus 312 VaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~ 375 (572)
T PRK04537 312 VATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375 (572)
T ss_pred EEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888777777554
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.3e-50 Score=431.91 Aligned_cols=342 Identities=21% Similarity=0.280 Sum_probs=268.9
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------------CCeEEE
Q 009048 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLV 83 (545)
Q Consensus 16 ~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~~~~lV 83 (545)
.|+.+.+++.+.+.|.+ +||..|+|+|.++|+.++.|+|++++||||+|||++|++|++.. ...+||
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 36678889999999997 79999999999999999999999999999999999999998743 136999
Q ss_pred EcChHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCc
Q 009048 84 VSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLL 159 (545)
Q Consensus 84 i~P~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l 159 (545)
|+||++|+.|+.+.++.+ ++....+.++......... +. ...+|+++||+.+.... .........+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~---~~~~IiV~TP~rL~~~~----~~~~~~l~~v 150 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---LR---GGVDVLVATPGRLLDLE----HQNAVKLDQV 150 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---Hc---CCCcEEEEChHHHHHHH----HcCCcccccc
Confidence 999999999999998874 4556666666554433221 11 23689999998764321 1122345668
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec---cCCCCcceee
Q 009048 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYE 235 (545)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~ni~~~ 235 (545)
++|||||||++.+|| |...+ ..+...+| ..+++++|||+++.+....... +.++..+.. ....+++...
T Consensus 151 ~~lViDEah~ll~~~--~~~~i---~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~--~~~~~~i~~~~~~~~~~~i~~~ 223 (456)
T PRK10590 151 EILVLDEADRMLDMG--FIHDI---RRVLAKLPAKRQNLLFSATFSDDIKALAEKL--LHNPLEIEVARRNTASEQVTQH 223 (456)
T ss_pred eEEEeecHHHHhccc--cHHHH---HHHHHhCCccCeEEEEeCCCcHHHHHHHHHH--cCCCeEEEEecccccccceeEE
Confidence 999999999999988 54443 33445554 5679999999998775533333 344443322 1222333333
Q ss_pred eecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEec
Q 009048 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (545)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT 315 (545)
+...+ ...+...+..++......++||||+++..++.+++.|...|+.+..|||++++++|..+++.|++|+++|||||
T Consensus 224 ~~~~~-~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 302 (456)
T PRK10590 224 VHFVD-KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT 302 (456)
T ss_pred EEEcC-HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 33222 23445556666666666789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHh
Q 009048 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (545)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~ 376 (545)
+++++|||+|+|++||||++|.++++|+||+||+||+|..|.+++|+...|...++.+.+.
T Consensus 303 dv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~ 363 (456)
T PRK10590 303 DIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKL 363 (456)
T ss_pred cHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988877766654
No 16
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.6e-50 Score=427.24 Aligned_cols=343 Identities=23% Similarity=0.317 Sum_probs=277.0
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----------CCeEEEEc
Q 009048 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVS 85 (545)
Q Consensus 16 ~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----------~~~~lVi~ 85 (545)
.|+.+.+++.+.+.|++ +||..|+++|.++|+.+++|+|++++||||+|||++|++|++.. ..++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 47788899999999997 79999999999999999999999999999999999999999842 35799999
Q ss_pred ChHHHHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccE
Q 009048 86 PLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (545)
Q Consensus 86 P~~aL~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~ 161 (545)
||++|+.|+.+.+.. .++.+..+.++........... ...+|+++||+.+...- .........+++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~------~~~~IlV~Tp~rl~~~~----~~~~~~~~~v~~ 150 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS------ENQDIVVATPGRLLQYI----KEENFDCRAVET 150 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc------CCCCEEEEChHHHHHHH----HcCCcCcccCCE
Confidence 999999998887765 4677777777776655433321 13678888887654211 112223456899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccC---CCCcceeeeec
Q 009048 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRY 238 (545)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~ni~~~v~~ 238 (545)
|||||||++.+|| |...+..+... .....++++||||++.....++...+ +.++..+.... .+.++...+..
T Consensus 151 lViDEah~~l~~~--~~~~~~~i~~~--~~~~~q~~~~SAT~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~i~~~~~~ 225 (434)
T PRK11192 151 LILDEADRMLDMG--FAQDIETIAAE--TRWRKQTLLFSATLEGDAVQDFAERL-LNDPVEVEAEPSRRERKKIHQWYYR 225 (434)
T ss_pred EEEECHHHHhCCC--cHHHHHHHHHh--CccccEEEEEEeecCHHHHHHHHHHH-ccCCEEEEecCCcccccCceEEEEE
Confidence 9999999999998 77666655322 22357889999999877666666655 34555444332 23344444444
Q ss_pred ccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc
Q 009048 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (545)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (545)
.+....+...|..+++.....++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++
T Consensus 226 ~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~ 305 (434)
T PRK11192 226 ADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVA 305 (434)
T ss_pred eCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcccc
Confidence 44445677778888876667789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHH
Q 009048 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (545)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~ 374 (545)
++|||+|+|++||||++|.|.+.|+||+||+||+|..|.+++++...|...+..+.
T Consensus 306 ~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 306 ARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred ccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877666544
No 17
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.4e-50 Score=428.38 Aligned_cols=348 Identities=18% Similarity=0.239 Sum_probs=273.4
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-------------CC
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PG 79 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-------------~~ 79 (545)
....|.++.+++.+.+.|.+ +||..|+++|.++|+.+++|+|+++.+|||||||++|++|++.. ..
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 34567778899999999997 89999999999999999999999999999999999999998752 35
Q ss_pred eEEEEcChHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhc
Q 009048 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (545)
Q Consensus 80 ~~lVi~P~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~ 155 (545)
++|||+||++|+.|+.+.++.+ ++.+..+.++........ .+... ..+|+++||+++... . -.....
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~~~~~--~~~Iiv~TP~~Ll~~--~--~~~~~~ 234 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLK---QLEAR--FCDILVATPGRLLDF--N--QRGEVH 234 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHH---HHhCC--CCCEEEECHHHHHHH--H--HcCCcc
Confidence 7999999999999999988774 566666666654433222 22222 368999999877321 1 011233
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccC---CCCcc
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNL 232 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~ni 232 (545)
...+++|||||||++.++| |.+.+..+.......++.+++++|||++..+....... +.++..+.... ..+++
T Consensus 235 l~~l~~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~ 310 (475)
T PRK01297 235 LDMVEVMVLDEADRMLDMG--FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQW--TTDPAIVEIEPENVASDTV 310 (475)
T ss_pred cccCceEEechHHHHHhcc--cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHh--ccCCEEEEeccCcCCCCcc
Confidence 4568999999999999987 76665555333322335689999999988776533333 23454433221 12233
Q ss_pred eeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEE
Q 009048 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (545)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VL 312 (545)
...+... ...++...+..++......++||||++++.++.+++.|...|+.+..+||+++.++|..+++.|++|+++||
T Consensus 311 ~~~~~~~-~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vL 389 (475)
T PRK01297 311 EQHVYAV-AGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVL 389 (475)
T ss_pred cEEEEEe-cchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEE
Confidence 2222222 124566777777777777789999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHH
Q 009048 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (545)
Q Consensus 313 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~ 375 (545)
|||+++++|||+|++++||++++|.|..+|+||+||+||.|..|.+++|++.+|...+..+.+
T Consensus 390 vaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~ 452 (475)
T PRK01297 390 VATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEE 452 (475)
T ss_pred EEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888776666544
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.3e-50 Score=432.00 Aligned_cols=344 Identities=22% Similarity=0.308 Sum_probs=265.1
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-------------CCC
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------KPG 79 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~-------------~~~ 79 (545)
+...|+.+++++.+.+.|++ .||..|+|+|.++|+.++.|+|++++||||||||++|++|++. .++
T Consensus 119 pi~~f~~~~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~ 197 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNP 197 (518)
T ss_pred hhcCHHhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCc
Confidence 34556677888999999986 7999999999999999999999999999999999999999874 245
Q ss_pred eEEEEcChHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhc
Q 009048 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (545)
Q Consensus 80 ~~lVi~P~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~ 155 (545)
.+|||+||++|+.|+.+.++.+ ++....+.++....... ..+. ...+|+++||+.+...- . .....
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~---~~~~IiV~TPgrL~~~l--~--~~~~~ 267 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQ---QGVELIVGTPGRLIDLL--S--KHDIE 267 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhc---CCCCEEEECHHHHHHHH--H--cCCcc
Confidence 7999999999998877777664 34455555544433221 1222 23678888888653211 0 11234
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc-CCCCc--c
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPN--L 232 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~n--i 232 (545)
...+.+|||||||++.+|| |++.+.. +...+++.+++++|||+++.+... ... .+.++..+... ..+++ +
T Consensus 268 l~~v~~lViDEad~ml~~g--f~~~i~~---i~~~l~~~q~l~~SATl~~~v~~l-~~~-~~~~~~~i~~~~~~~~~~~v 340 (518)
T PLN00206 268 LDNVSVLVLDEVDCMLERG--FRDQVMQ---IFQALSQPQVLLFSATVSPEVEKF-ASS-LAKDIILISIGNPNRPNKAV 340 (518)
T ss_pred chheeEEEeecHHHHhhcc--hHHHHHH---HHHhCCCCcEEEEEeeCCHHHHHH-HHH-hCCCCEEEEeCCCCCCCcce
Confidence 5668999999999999998 8876544 455668899999999999887552 232 33455544432 22322 2
Q ss_pred eeeeecccchhhHHHHHHHHHHhCC--CccEEEEecchhhHHHHHHHHHh-CCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 009048 233 FYEVRYKDLLDDAYADLCSVLKANG--DTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWISSRK 309 (545)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~--~~~~IIf~~t~~~~~~l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (545)
...+.... ..++...+.+++.... ..++||||+++..++.++..|.. .|+.+..+||++++++|..+++.|++|++
T Consensus 341 ~q~~~~~~-~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~ 419 (518)
T PLN00206 341 KQLAIWVE-TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEV 419 (518)
T ss_pred eEEEEecc-chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCC
Confidence 22222222 1334556666665432 35799999999999999999975 59999999999999999999999999999
Q ss_pred cEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHH
Q 009048 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (545)
Q Consensus 310 ~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~ 375 (545)
+|||||+++++|||+|+|++||+|++|.++++|+||+|||||.|..|.+++|++.+|...+..+..
T Consensus 420 ~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~ 485 (518)
T PLN00206 420 PVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVA 485 (518)
T ss_pred CEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988776655543
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.4e-49 Score=430.58 Aligned_cols=345 Identities=21% Similarity=0.299 Sum_probs=276.5
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEEcChH
Q 009048 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLI 88 (545)
Q Consensus 15 ~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lVi~P~~ 88 (545)
..|..+.+++.+.++|.+ +||.+|+|+|.++|+.+++|+|+++.||||+|||++|++|++. ..+.+||++||+
T Consensus 6 ~~f~~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 6 TTFADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 347788899999999987 7999999999999999999999999999999999999999874 245799999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEE
Q 009048 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (545)
Q Consensus 89 aL~~qq~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iV 163 (545)
+|+.|+.+.++.+ ++.+..+.++........ .+. ...+|+++||+.+...- .........+.+||
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~---~l~---~~~~IVVgTPgrl~d~l----~r~~l~l~~l~~lV 154 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR---ALR---QGPQIVVGTPGRLLDHL----KRGTLDLSKLSGLV 154 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHH---Hhc---CCCCEEEECHHHHHHHH----HcCCcchhhceEEE
Confidence 9999998887764 567777777765543322 222 23678888888663211 11223355689999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc---CCCCcceeeeecc
Q 009048 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVRYK 239 (545)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~ni~~~v~~~ 239 (545)
|||||+++.|| |... +..+...+| ..++++||||+++.+... ...+ +.+|..+... ...+++...+...
T Consensus 155 lDEAd~ml~~g--f~~d---i~~Il~~lp~~~q~llfSAT~p~~i~~i-~~~~-l~~~~~i~i~~~~~~~~~i~q~~~~v 227 (629)
T PRK11634 155 LDEADEMLRMG--FIED---VETIMAQIPEGHQTALFSATMPEAIRRI-TRRF-MKEPQEVRIQSSVTTRPDISQSYWTV 227 (629)
T ss_pred eccHHHHhhcc--cHHH---HHHHHHhCCCCCeEEEEEccCChhHHHH-HHHH-cCCCeEEEccCccccCCceEEEEEEe
Confidence 99999999988 5544 444555565 678999999998877653 3322 3455443322 2334443332222
Q ss_pred cchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccc
Q 009048 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (545)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~ 319 (545)
. ...+...|..++......++||||+|+..++.+++.|...|+.+..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 228 ~-~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~a 306 (629)
T PRK11634 228 W-GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 (629)
T ss_pred c-hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHh
Confidence 2 235667788888776667899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcc
Q 009048 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (545)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~ 378 (545)
+|||+|+|++||||++|.+++.|+||+||+||.|+.|.+++|+.+.|...++.+.+...
T Consensus 307 rGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999888888877543
No 20
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-49 Score=425.20 Aligned_cols=343 Identities=22% Similarity=0.317 Sum_probs=282.1
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCC-------Ce-EEEEcC
Q 009048 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP-------GI-VLVVSP 86 (545)
Q Consensus 15 ~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~-------~~-~lVi~P 86 (545)
..|..+.+.+.+.+.|.+ .||..|+|+|..+|+.++.|+|+++.|+||+|||++|.+|++.+- .. +||++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 568888999999999998 899999999999999999999999999999999999999998631 12 899999
Q ss_pred hHHHHHHHHHHHHHc-----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh--hhccCCc
Q 009048 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (545)
Q Consensus 87 ~~aL~~qq~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~~~l 159 (545)
|++|+.|..+.+..+ ++.+..+.++.+....... +..+ .+++++||-.+ ..+.. ......+
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~---~~ivVaTPGRl------lD~i~~~~l~l~~v 175 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG---VDIVVATPGRL------LDLIKRGKLDLSGV 175 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC---CCEEEECccHH------HHHHHcCCcchhhc
Confidence 999999999888773 4566777877776655433 3332 56666665544 33322 3456668
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccC-----CCCcce
Q 009048 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-----NRPNLF 233 (545)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~-----~r~ni~ 233 (545)
.++|+||||+|.+.| |.++...+ ....| +.+++++|||++..+..-.... +.+|..+.... ..+++.
T Consensus 176 ~~lVlDEADrmLd~G--f~~~i~~I---~~~~p~~~qtllfSAT~~~~i~~l~~~~--l~~p~~i~v~~~~~~~~~~~i~ 248 (513)
T COG0513 176 ETLVLDEADRMLDMG--FIDDIEKI---LKALPPDRQTLLFSATMPDDIRELARRY--LNDPVEIEVSVEKLERTLKKIK 248 (513)
T ss_pred CEEEeccHhhhhcCC--CHHHHHHH---HHhCCcccEEEEEecCCCHHHHHHHHHH--ccCCcEEEEccccccccccCce
Confidence 999999999999997 88766665 34444 7999999999999765533333 34776554431 334555
Q ss_pred eeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Q 009048 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (545)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLV 313 (545)
..+........++..|..+++.....++||||+|+..++.++..|...|+++..+||+|++++|..+++.|++|+.+|||
T Consensus 249 q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLV 328 (513)
T COG0513 249 QFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLV 328 (513)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 55555544345889999999887777899999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccc-cHHHHHHHHHhc
Q 009048 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKN 377 (545)
Q Consensus 314 aT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~-d~~~~~~i~~~~ 377 (545)
||+++++|||+|+|.+|||||+|.+.+.|+||+||+||.|..|.++.|+.+. |...+..+.+..
T Consensus 329 aTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~ 393 (513)
T COG0513 329 ATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRL 393 (513)
T ss_pred EechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 788877777654
No 21
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.7e-48 Score=407.39 Aligned_cols=345 Identities=20% Similarity=0.286 Sum_probs=266.5
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcChH
Q 009048 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (545)
Q Consensus 15 ~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~ 88 (545)
..|+.+++++.+.+.|.. +||..|+|+|.++|+.+++|+|+++.||||+|||++|++|++.. ...+||++|++
T Consensus 28 ~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred CCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 556677889999999987 89999999999999999999999999999999999999998752 45799999999
Q ss_pred HHHHHHHHHHHHcC----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEE
Q 009048 89 ALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (545)
Q Consensus 89 aL~~qq~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iVi 164 (545)
+|+.|+.+.+..++ +.+....++...... ...+.. ..+++++||+.+.... .........+++|||
T Consensus 107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~---~~~Ivv~Tp~~l~~~l----~~~~~~l~~i~lvVi 176 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKA---GVHMVVGTPGRVYDMI----DKRHLRVDDLKLFIL 176 (401)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcC---CCCEEEECcHHHHHHH----HhCCcccccccEEEE
Confidence 99999888887754 333333344332221 222222 2578888888653211 112223566899999
Q ss_pred eccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc---CCCCcceeeeecccc
Q 009048 165 DEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVRYKDL 241 (545)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~ni~~~v~~~~~ 241 (545)
||||++.++| |+..+..+ +....++.+++++|||++..+....... +..+..+... ....++...+.....
T Consensus 177 DEah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (401)
T PTZ00424 177 DEADEMLSRG--FKGQIYDV--FKKLPPDVQVALFSATMPNEILELTTKF--MRDPKRILVKKDELTLEGIRQFYVAVEK 250 (401)
T ss_pred ecHHHHHhcc--hHHHHHHH--HhhCCCCcEEEEEEecCCHHHHHHHHHH--cCCCEEEEeCCCCcccCCceEEEEecCh
Confidence 9999999987 55444333 3333457899999999998766543333 3344332211 122233222222222
Q ss_pred hhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccc
Q 009048 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (545)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (545)
...+...+..++......++||||+|++.++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|
T Consensus 251 ~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~G 330 (401)
T PTZ00424 251 EEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARG 330 (401)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCC
Confidence 23455666777766666789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHh
Q 009048 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (545)
Q Consensus 322 iD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~ 376 (545)
||+|++++||++++|.|...|+||+||+||.|..|.|++++++.|...+..+.+.
T Consensus 331 iDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~ 385 (401)
T PTZ00424 331 IDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERH 385 (401)
T ss_pred cCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887766553
No 22
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.6e-48 Score=388.85 Aligned_cols=340 Identities=22% Similarity=0.321 Sum_probs=271.8
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---------------C
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------------K 77 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---------------~ 77 (545)
+...|+..+.+.++++.++. .||..++|+|..+|+..++.+|+|.+|.||||||++|++|++. .
T Consensus 243 plrnwEE~~~P~e~l~~I~~-~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~ 321 (673)
T KOG0333|consen 243 PLRNWEESGFPLELLSVIKK-PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIE 321 (673)
T ss_pred cccChhhcCCCHHHHHHHHh-cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhccc
Confidence 34566777777889998876 7999999999999999999999999999999999999998873 2
Q ss_pred CCeEEEEcChHHHHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHH-H-H
Q 009048 78 PGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-L-K 151 (545)
Q Consensus 78 ~~~~lVi~P~~aL~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~-l-~ 151 (545)
++.++|+.||++|++|..+.-.+ +|+.+..+.++.+..+..-- +.. .+.++ ++||+.+.. | .
T Consensus 322 gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fq---ls~---gceiv------iatPgrLid~Len 389 (673)
T KOG0333|consen 322 GPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQ---LSM---GCEIV------IATPGRLIDSLEN 389 (673)
T ss_pred CceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhh---hhc---cceee------ecCchHHHHHHHH
Confidence 67899999999999888777665 46777777777665544211 111 14454 455553322 2 2
Q ss_pred hhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH-------------------HhCC--C--cCEEEEEcCCChhhH
Q 009048 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR-------------------NYLP--D--VPILALTATAAPKVQ 208 (545)
Q Consensus 152 ~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~-------------------~~~~--~--~~~l~lTAT~~~~~~ 208 (545)
...-++...+||+|||+++.++| |.|+|.++..-. ..+. . .+.+.||||++|.+.
T Consensus 390 r~lvl~qctyvvldeadrmiDmg--fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ve 467 (673)
T KOG0333|consen 390 RYLVLNQCTYVVLDEADRMIDMG--FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVE 467 (673)
T ss_pred HHHHhccCceEeccchhhhhccc--ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHH
Confidence 23334567899999999999999 999988753321 1111 1 467999999999987
Q ss_pred HHHHHHhcCCCCeEEeccCC---CCcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcE
Q 009048 209 KDVMESLCLQNPLVLKSSFN---RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (545)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~---r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~ 285 (545)
. +..-.+.+|+++..++. .+-+...+..... +.+...|.+++..+...++|||+|+++.|+.||+.|.+.|+.+
T Consensus 468 r--lar~ylr~pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~ 544 (673)
T KOG0333|consen 468 R--LARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKV 544 (673)
T ss_pred H--HHHHHhhCCeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceE
Confidence 7 33344677876655432 2334444444433 4568899999998888899999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 286 ~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
..|||+-++++|..+++.|++|..+|||||+++|+|||+|||.+||+||+++|+++|.|||||+||+|+.|.++.|+++.
T Consensus 545 ~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~ 624 (673)
T KOG0333|consen 545 TTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPA 624 (673)
T ss_pred EEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHH
Q 009048 366 DRRRM 370 (545)
Q Consensus 366 d~~~~ 370 (545)
|-..+
T Consensus 625 dt~v~ 629 (673)
T KOG0333|consen 625 DTAVF 629 (673)
T ss_pred hhHHH
Confidence 85533
No 23
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.9e-47 Score=422.13 Aligned_cols=339 Identities=19% Similarity=0.210 Sum_probs=251.6
Q ss_pred CChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----CCeEEEEcChHHHHHHH
Q 009048 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQ 94 (545)
Q Consensus 20 ~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----~~~~lVi~P~~aL~~qq 94 (545)
..+++.+.+.|++ .|+..|+++|.++|+.+++|+|+++.+|||||||+||++|++.. ...+|||+||++|++||
T Consensus 19 ~~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~ 97 (742)
T TIGR03817 19 AWAHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQ 97 (742)
T ss_pred CcCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHH
Confidence 3456889999987 79999999999999999999999999999999999999999852 46899999999999999
Q ss_pred HHHHHHc---CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009048 95 VIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (545)
Q Consensus 95 ~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (545)
...++++ ++.+..+.+......+..+ .. ..+++++||+++.................+++|||||||.+.
T Consensus 98 ~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~~---~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~ 170 (742)
T TIGR03817 98 LRAVRELTLRGVRPATYDGDTPTEERRWA----RE---HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYR 170 (742)
T ss_pred HHHHHHhccCCeEEEEEeCCCCHHHHHHH----hc---CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhcc
Confidence 9999986 4566666666655444322 11 268999999877431110000000113558999999999986
Q ss_pred c-cCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCC--Ccceeee-ecc-------
Q 009048 172 S-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR--PNLFYEV-RYK------- 239 (545)
Q Consensus 172 ~-~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r--~ni~~~v-~~~------- 239 (545)
. +|.++...+.++..+...++ +.+++++|||++.... ....+.. .+..+...... ....+.+ .+.
T Consensus 171 g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~--~~~~l~g-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 171 GVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA--AASRLIG-APVVAVTEDGSPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH--HHHHHcC-CCeEEECCCCCCcCceEEEEecCCccccccc
Confidence 5 23334444555655655554 5789999999988753 2433322 33332221111 1111111 110
Q ss_pred -------cchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC--------CCcEEEecCCCCHHHHHHHHHHH
Q 009048 240 -------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDW 304 (545)
Q Consensus 240 -------~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f 304 (545)
....++...+..+++. +.++||||+|++.++.++..|++. +..+..|||++++++|..++++|
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred cccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 0112344455555553 468999999999999999998763 56788999999999999999999
Q ss_pred HcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEec--cccHHHHH
Q 009048 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG--MDDRRRME 371 (545)
Q Consensus 305 ~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~--~~d~~~~~ 371 (545)
++|++++||||+++++|||+|+|++||++++|.+.+.|+||+|||||.|+.|.++++.. +.|...+.
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVH 394 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999986 44544444
No 24
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-46 Score=374.41 Aligned_cols=334 Identities=22% Similarity=0.330 Sum_probs=272.3
Q ss_pred ChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---------CC--eEEEEcChHH
Q 009048 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PG--IVLVVSPLIA 89 (545)
Q Consensus 21 ~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------~~--~~lVi~P~~a 89 (545)
++.+++.+++.+ +||..++|.|..+|+.+++++|+.+.+|||||||++|++|++.. ++ -+|||+||++
T Consensus 12 ~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRE 90 (567)
T KOG0345|consen 12 PLSPWLLEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRE 90 (567)
T ss_pred CccHHHHHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHH
Confidence 345999999987 89999999999999999999999999999999999999999841 23 5899999999
Q ss_pred HHHHHHHHHHHc-----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhh----hccCCcc
Q 009048 90 LMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLLN 160 (545)
Q Consensus 90 L~~qq~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~----~~~~~l~ 160 (545)
|+.|..+.+..+ .+.+.++.++.+....... +.... ..|+++| ||++..+... .+...+.
T Consensus 91 La~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~---fkee~--~nIlVgT------PGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 91 LARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKT---FKEEG--PNILVGT------PGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred HHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHH---HHHhC--CcEEEeC------chhHHHHHhchhhhccccccc
Confidence 999988776653 5667888877655443332 23333 4455555 5544444322 3355689
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCC----C---cc
Q 009048 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR----P---NL 232 (545)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r----~---ni 232 (545)
++|+||||++.++| |. ..+..+++.+| ....=+||||.+..+.. ....|+++|+.+...... | .+
T Consensus 160 ~LVLDEADrLldmg--Fe---~~~n~ILs~LPKQRRTGLFSATq~~~v~d--L~raGLRNpv~V~V~~k~~~~tPS~L~~ 232 (567)
T KOG0345|consen 160 ILVLDEADRLLDMG--FE---ASVNTILSFLPKQRRTGLFSATQTQEVED--LARAGLRNPVRVSVKEKSKSATPSSLAL 232 (567)
T ss_pred eEEecchHhHhccc--HH---HHHHHHHHhcccccccccccchhhHHHHH--HHHhhccCceeeeecccccccCchhhcc
Confidence 99999999999999 55 45666777777 46677899999999876 666789999876543322 1 23
Q ss_pred eeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCc
Q 009048 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (545)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (545)
+|.+.. ...++..+.+++.....+++|||.+|-..++..+..|... +..+..+||.|.+..|..+++.|.+..-.
T Consensus 233 ~Y~v~~---a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~ 309 (567)
T KOG0345|consen 233 EYLVCE---ADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG 309 (567)
T ss_pred eeeEec---HHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc
Confidence 333332 2578899999999888899999999999999999998875 67889999999999999999999998889
Q ss_pred EEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHh
Q 009048 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (545)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~ 376 (545)
+|+||+++++|||+|+|++||+||+|.++..|+||+||+||.|+.|.+++|..+.+...++++--.
T Consensus 310 vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~ 375 (567)
T KOG0345|consen 310 VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIK 375 (567)
T ss_pred eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999888888776543
No 25
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-47 Score=354.49 Aligned_cols=347 Identities=20% Similarity=0.325 Sum_probs=276.7
Q ss_pred ccccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEE
Q 009048 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVV 84 (545)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lVi 84 (545)
......|+.+++.+++.+.+.. +||..|..+|..||+.+++|+|+++++..|+|||.+|-+..+. +.-.++|+
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lil 101 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALIL 101 (400)
T ss_pred cccccchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEe
Confidence 4456678889999999999997 7999999999999999999999999999999999988766654 34679999
Q ss_pred cChHHHHHHHHHHHHHcC----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhh--hccCC
Q 009048 85 SPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGL 158 (545)
Q Consensus 85 ~P~~aL~~qq~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~--~~~~~ 158 (545)
+||++|+.|.-..+..+| +.+....++.+..+.-. .+.. ...++ ..|||....+.+. .+-..
T Consensus 102 sPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedik---kld~---G~hvV------sGtPGrv~dmikr~~L~tr~ 169 (400)
T KOG0328|consen 102 SPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIK---KLDY---GQHVV------SGTPGRVLDMIKRRSLRTRA 169 (400)
T ss_pred cChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhh---hhcc---cceEe------eCCCchHHHHHHhccccccc
Confidence 999999998888887754 44443333333222111 1111 23444 4455554444322 22345
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC---CCccee
Q 009048 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFY 234 (545)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~ni~~ 234 (545)
+.++|+|||+.+++.| |. .++..+.+.+| +.+++++|||++.++.+.. ...+.+|+.+-...+ ...+..
T Consensus 170 vkmlVLDEaDemL~kg--fk---~Qiydiyr~lp~~~Qvv~~SATlp~eilemt--~kfmtdpvrilvkrdeltlEgIKq 242 (400)
T KOG0328|consen 170 VKMLVLDEADEMLNKG--FK---EQIYDIYRYLPPGAQVVLVSATLPHEILEMT--EKFMTDPVRILVKRDELTLEGIKQ 242 (400)
T ss_pred eeEEEeccHHHHHHhh--HH---HHHHHHHHhCCCCceEEEEeccCcHHHHHHH--HHhcCCceeEEEecCCCchhhhhh
Confidence 8999999999999877 44 45556666666 8999999999999998843 344677775543322 222333
Q ss_pred eeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEe
Q 009048 235 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (545)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (545)
.+...+..+.++..|+++.....-.+.+|||||+..++.|.+.+++..+.+...||+|++++|..++++|++|+.+||++
T Consensus 243 f~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLit 322 (400)
T KOG0328|consen 243 FFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLIT 322 (400)
T ss_pred heeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEE
Confidence 33444444568888998888777778999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhc
Q 009048 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (545)
Q Consensus 315 T~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~ 377 (545)
|+++++|+|+|.|.+||+||+|...+.|+||+||.||.|+.|.++-|+..+|.+.++.|.+.-
T Consensus 323 TDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~y 385 (400)
T KOG0328|consen 323 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYY 385 (400)
T ss_pred echhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888777643
No 26
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-46 Score=362.63 Aligned_cols=352 Identities=20% Similarity=0.225 Sum_probs=270.6
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcC
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P 86 (545)
....|+.+++.+.+.+.|+. +|+..++|+|..+|+.+++|+|||.+|.||||||.+|.+|++.+ +-.++|++|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~-l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTP 83 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKA-LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTP 83 (442)
T ss_pred ccCchhhcCccHHHHHHHHH-hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecc
Confidence 45678899999999999997 89999999999999999999999999999999999999999975 346999999
Q ss_pred hHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEE
Q 009048 87 LIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (545)
Q Consensus 87 ~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~i 162 (545)
|++|+.|..++|..+ ++++..+.++...-..... ... ...++++||+.++-+-.-+.=.....+.++.++
T Consensus 84 TrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~----L~~--rPHvVvatPGRlad~l~sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 84 TRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAI----LSD--RPHVVVATPGRLADHLSSNLGVCSWIFQRLKFL 157 (442)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhh----ccc--CCCeEecCccccccccccCCccchhhhhceeeE
Confidence 999999999999875 4566666666544332221 122 367888888877543211100011223458899
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCCC-cCEEEEEcCCChhhHHHHHHHhcCCC--CeEEeccCCCC---cc--ee
Q 009048 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQN--PLVLKSSFNRP---NL--FY 234 (545)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~-~~~l~lTAT~~~~~~~~i~~~l~~~~--~~~~~~~~~r~---ni--~~ 234 (545)
|+|||+.+.+-. |- ..|..+.+..|. .+.++||||++....... ...... +..+....+.+ .+ .|
T Consensus 158 VlDEADrvL~~~--f~---d~L~~i~e~lP~~RQtLlfSATitd~i~ql~--~~~i~k~~a~~~e~~~~vstvetL~q~y 230 (442)
T KOG0340|consen 158 VLDEADRVLAGC--FP---DILEGIEECLPKPRQTLLFSATITDTIKQLF--GCPITKSIAFELEVIDGVSTVETLYQGY 230 (442)
T ss_pred Eecchhhhhccc--hh---hHHhhhhccCCCccceEEEEeehhhHHHHhh--cCCcccccceEEeccCCCCchhhhhhhe
Confidence 999999998854 44 344555666665 489999999988764421 111122 22222211111 11 22
Q ss_pred eeecccchhhHHHHHHHHH---HhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 009048 235 EVRYKDLLDDAYADLCSVL---KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (545)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l---~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (545)
.+...+ .+-..+...+ +..+.+.++||+++..+|+.|+..|+..++.+..+|+-|++++|...+.+|+++..+|
T Consensus 231 I~~~~~---vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~i 307 (442)
T KOG0340|consen 231 ILVSID---VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARI 307 (442)
T ss_pred eecchh---hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccE
Confidence 222222 2222333333 3335678999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcccCC
Q 009048 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (545)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~~~ 381 (545)
||||+++++|+|+|.|.+||+|++|.++.+|+||+||++|+|+.|.++.++...|...+..|....+.+.
T Consensus 308 liaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl 377 (442)
T KOG0340|consen 308 LIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKL 377 (442)
T ss_pred EEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999988776553
No 27
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-46 Score=376.31 Aligned_cols=342 Identities=23% Similarity=0.358 Sum_probs=274.2
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---------CCeEEEEc
Q 009048 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVVS 85 (545)
Q Consensus 15 ~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------~~~~lVi~ 85 (545)
..|..+.++..+.+++.. +||..|+|+|..+|+..+.|+|++.+|.||||||.+|.+|+|.+ ..++||++
T Consensus 181 ~sF~~mNLSRPlLka~~~-lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACST-LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhHHhcccchHHHHHHHh-cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 467778889999999986 89999999999999999999999999999999999999999864 34799999
Q ss_pred ChHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhh-HHHHHhhhc--cCC
Q 009048 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKIHS--RGL 158 (545)
Q Consensus 86 P~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~-~~~l~~~~~--~~~ 158 (545)
||++|+-|.....+.+ .|.+....++.........+. .. .+|++ +|||+ +.++.+... ...
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~--PDIVI------ATPGRlIDHlrNs~sf~lds 327 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SR--PDIVI------ATPGRLIDHLRNSPSFNLDS 327 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hC--CCEEE------ecchhHHHHhccCCCccccc
Confidence 9999998876665552 466666667777665544432 22 44544 55553 344433322 445
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCC---Ccc--
Q 009048 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR---PNL-- 232 (545)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r---~ni-- 232 (545)
+.++|+|||++|++-| |+.. +..+...+| +.+.++||||++..+.. ...+.++.|+.+....+. +.+
T Consensus 328 iEVLvlDEADRMLeeg--Fade---mnEii~lcpk~RQTmLFSATMteeVkd--L~slSL~kPvrifvd~~~~~a~~LtQ 400 (691)
T KOG0338|consen 328 IEVLVLDEADRMLEEG--FADE---MNEIIRLCPKNRQTMLFSATMTEEVKD--LASLSLNKPVRIFVDPNKDTAPKLTQ 400 (691)
T ss_pred eeEEEechHHHHHHHH--HHHH---HHHHHHhccccccceeehhhhHHHHHH--HHHhhcCCCeEEEeCCccccchhhhH
Confidence 8899999999999988 7754 455555565 78999999999999876 667788888866443321 222
Q ss_pred -eeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 009048 233 -FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (545)
Q Consensus 233 -~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (545)
+..+++.- ..+.-..|..++...-...+|||+.|++.|+.+.-.|--.|+++.-+||.+++++|...++.|++++++|
T Consensus 401 EFiRIR~~r-e~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidv 479 (691)
T KOG0338|consen 401 EFIRIRPKR-EGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDV 479 (691)
T ss_pred HHheecccc-ccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCE
Confidence 22333221 1223334445554444557999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhc
Q 009048 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (545)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~ 377 (545)
||||+++++|+|++.|..||+|.+|.+.+.|+||+||+.|+|+.|.++.|+..+|+..++.++.+.
T Consensus 480 LiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 480 LIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred EEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999998874
No 28
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.7e-46 Score=371.16 Aligned_cols=343 Identities=20% Similarity=0.263 Sum_probs=272.8
Q ss_pred cccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----------CCeE
Q 009048 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIV 81 (545)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----------~~~~ 81 (545)
.....++...+++...+++++ +||..++++|...|+.++.|+|+++.|-||+|||++|++|++.. +-.+
T Consensus 79 ~~~~~f~~~~LS~~t~kAi~~-~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~v 157 (543)
T KOG0342|consen 79 TTTFRFEEGSLSPLTLKAIKE-MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGV 157 (543)
T ss_pred hhhhHhhccccCHHHHHHHHh-cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeE
Confidence 345667788899999999998 79999999999999999999999999999999999999999852 2358
Q ss_pred EEEcChHHHHHHHHHHHHHc-----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhc-
Q 009048 82 LVVSPLIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS- 155 (545)
Q Consensus 82 lVi~P~~aL~~qq~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~- 155 (545)
|||+||++|+.|....++++ ++.+..+.++....... +.+.. .+.++++||-.+. ..+.+...
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~---~kl~k---~~niliATPGRLl-----DHlqNt~~f 226 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEA---DKLVK---GCNILIATPGRLL-----DHLQNTSGF 226 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHH---HHhhc---cccEEEeCCchHH-----hHhhcCCcc
Confidence 99999999999999888773 45555555554433222 22222 3667666665432 11211111
Q ss_pred -cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCC----
Q 009048 156 -RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP---- 230 (545)
Q Consensus 156 -~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~---- 230 (545)
...+.++|+||||++++.| ||.++.+|..+.. ...+.++||||.++.|.....-.|. .+|..+...-...
T Consensus 227 ~~r~~k~lvlDEADrlLd~G--F~~di~~Ii~~lp--k~rqt~LFSAT~~~kV~~l~~~~L~-~d~~~v~~~d~~~~~Th 301 (543)
T KOG0342|consen 227 LFRNLKCLVLDEADRLLDIG--FEEDVEQIIKILP--KQRQTLLFSATQPSKVKDLARGALK-RDPVFVNVDDGGERETH 301 (543)
T ss_pred hhhccceeEeecchhhhhcc--cHHHHHHHHHhcc--ccceeeEeeCCCcHHHHHHHHHhhc-CCceEeecCCCCCcchh
Confidence 1235789999999999999 8877766654443 2788999999999999774443443 3566665432221
Q ss_pred ---cceeeeecccchhhHHHHHHHHHHhCCC-ccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc
Q 009048 231 ---NLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (545)
Q Consensus 231 ---ni~~~v~~~~~~~~~~~~l~~~l~~~~~-~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (545)
+--|.+... ...+..+..+++++.. .++||||+|...+..+++.|+...++|..+||++++..|..+..+|++
T Consensus 302 e~l~Qgyvv~~~---~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~k 378 (543)
T KOG0342|consen 302 ERLEQGYVVAPS---DSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCK 378 (543)
T ss_pred hcccceEEeccc---cchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhh
Confidence 112333332 3457788888888765 789999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHH
Q 009048 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (545)
Q Consensus 307 g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~ 374 (545)
.+.-|||||+++++|+|+|+|++||+|++|.++++|+||+||+||.|..|.++++..|.+...++.+-
T Consensus 379 aesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 379 AESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred cccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988776
No 29
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-46 Score=373.72 Aligned_cols=351 Identities=22% Similarity=0.280 Sum_probs=267.9
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------------CCeE
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIV 81 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~~~~ 81 (545)
+..|..+++++.+...|...++++.++.+|.++|+.+++|+|++|.++||||||++|++|+++. +..+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 5678889999999999999999999999999999999999999999999999999999999852 5679
Q ss_pred EEEcChHHHHHHHHHHHHHcCCceeEec--ccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH--hhhccC
Q 009048 82 LVVSPLIALMENQVIGLKEKGIAGEFLS--STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRG 157 (545)
Q Consensus 82 lVi~P~~aL~~qq~~~l~~~gi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~--~~~~~~ 157 (545)
|||+|||+|+.|.++.++++.-+...+. .-.....+......+..| +.|+++||..+.. .+. ......
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG---iNILIgTPGRLvD-----HLknT~~i~~s 286 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG---INILIGTPGRLVD-----HLKNTKSIKFS 286 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC---ceEEEcCchHHHH-----HHhccchheee
Confidence 9999999999999999998643322221 111122222223334443 6777777665432 232 223345
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHh-------CC----CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec-
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-------LP----DVPILALTATAAPKVQKDVMESLCLQNPLVLKS- 225 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-------~~----~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~- 225 (545)
.+++||+||||++.+.| |..++..|.++... .+ ..+-++||||++..|.+ ...+.+.+|+.+..
T Consensus 287 ~LRwlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~r--La~~sLkDpv~I~ld 362 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNR--LADLSLKDPVYISLD 362 (708)
T ss_pred eeeEEEecchhHHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHH--HhhccccCceeeecc
Confidence 58999999999999999 77777776655532 12 24469999999999987 77888899988761
Q ss_pred ----cCC----------CC-------------cc--eeeeecccc-hhhHHHHHHHHHHhCCCccEEEEecchhhHHHHH
Q 009048 226 ----SFN----------RP-------------NL--FYEVRYKDL-LDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (545)
Q Consensus 226 ----~~~----------r~-------------ni--~~~v~~~~~-~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~ 275 (545)
..+ .+ ++ .|.+++... .-.....|....+.....++|||+++.+.++.-+
T Consensus 363 ~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy 442 (708)
T KOG0348|consen 363 KSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHY 442 (708)
T ss_pred chhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHH
Confidence 111 00 11 111111110 0011222334444556678999999999999998
Q ss_pred HHHHhC----------------------CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEe
Q 009048 276 AYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333 (545)
Q Consensus 276 ~~L~~~----------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~ 333 (545)
..|.+. +..+..+||+|++++|..+++.|...+-.||+||+++++|+|+|+|++||.|
T Consensus 443 ~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQY 522 (708)
T KOG0348|consen 443 SLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQY 522 (708)
T ss_pred HHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEe
Confidence 888751 2356889999999999999999999888899999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHh
Q 009048 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (545)
Q Consensus 334 ~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~ 376 (545)
++|.+.++|+||+||++|.|..|.+++|..|.+.+.++.+...
T Consensus 523 d~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 523 DPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred CCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 9999999999999999999999999999999999877665543
No 30
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-46 Score=373.12 Aligned_cols=342 Identities=22% Similarity=0.306 Sum_probs=280.2
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----------CCeEEE
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLV 83 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----------~~~~lV 83 (545)
...|..++++....+.|++ -+|..++.+|.++|+..+.|+|++..|.||||||++|++|.+.. +-=+||
T Consensus 68 ~~kF~dlpls~~t~kgLke-~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalI 146 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKE-AKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALI 146 (758)
T ss_pred hhhHHhCCCchHHHHhHhh-cCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEE
Confidence 4578899999999999998 59999999999999999999999999999999999999999853 234899
Q ss_pred EcChHHHHHHHHHHHHHcC----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhh--ccC
Q 009048 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRG 157 (545)
Q Consensus 84 i~P~~aL~~qq~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~--~~~ 157 (545)
|+||++|+.|.++.|.+.| ..+..+.++........-. ..+.|+++||-.+.. .+.... +-.
T Consensus 147 ISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-------~~mNILVCTPGRLLQ-----Hmde~~~f~t~ 214 (758)
T KOG0343|consen 147 ISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-------SQMNILVCTPGRLLQ-----HMDENPNFSTS 214 (758)
T ss_pred ecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-------hcCCeEEechHHHHH-----HhhhcCCCCCC
Confidence 9999999999999999865 4555565555443322211 136777777664432 222222 234
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc-----CCCCc
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-----FNRPN 231 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-----~~r~n 231 (545)
.+.++|+|||+++.++| |. ..|..+...+| ..+.++||||.+..+.. ...|.+.+|.++... ....+
T Consensus 215 ~lQmLvLDEADR~LDMG--Fk---~tL~~Ii~~lP~~RQTLLFSATqt~svkd--LaRLsL~dP~~vsvhe~a~~atP~~ 287 (758)
T KOG0343|consen 215 NLQMLVLDEADRMLDMG--FK---KTLNAIIENLPKKRQTLLFSATQTKSVKD--LARLSLKDPVYVSVHENAVAATPSN 287 (758)
T ss_pred cceEEEeccHHHHHHHh--HH---HHHHHHHHhCChhheeeeeecccchhHHH--HHHhhcCCCcEEEEeccccccChhh
Confidence 58899999999999999 66 45666777776 68899999999999977 777889999876543 12223
Q ss_pred ceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 009048 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRK 309 (545)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (545)
+...+... ...+++..|..+++.+...++|||++|.+++..+++.+.+. |++...+||+|++..|..++.+|.+.+.
T Consensus 288 L~Q~y~~v-~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~ 366 (758)
T KOG0343|consen 288 LQQSYVIV-PLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRA 366 (758)
T ss_pred hhheEEEE-ehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcc
Confidence 33222222 23688999999999999999999999999999999999875 9999999999999999999999999999
Q ss_pred cEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHH-HHHHHHHh
Q 009048 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR-RMEFILSK 376 (545)
Q Consensus 310 ~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~-~~~~i~~~ 376 (545)
-||+||+++++|+|+|.|++||++|+|.++++|+||+||++|.+..|.++++..|++.. .+..+.+.
T Consensus 367 ~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 367 VVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred eEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999854 44555444
No 31
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-45 Score=360.34 Aligned_cols=336 Identities=21% Similarity=0.345 Sum_probs=274.1
Q ss_pred CChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------------CCeEEEEcCh
Q 009048 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLVVSPL 87 (545)
Q Consensus 20 ~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~~~~lVi~P~ 87 (545)
+...+++.+.+++ .||..|+|+|.+|++.+++|+|++.+|.||+|||++|++|.+.. +..+||++||
T Consensus 225 Fq~~pevmenIkK-~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~pt 303 (629)
T KOG0336|consen 225 FQCYPEVMENIKK-TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPT 303 (629)
T ss_pred HhhhHHHHHHHHh-ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEecc
Confidence 5566788888887 69999999999999999999999999999999999999998742 4569999999
Q ss_pred HHHHHHHHHHHHH---cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHH--HhhhccCCccEE
Q 009048 88 IALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRGLLNLV 162 (545)
Q Consensus 88 ~aL~~qq~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l--~~~~~~~~l~~i 162 (545)
++|+.|.-....+ .|....++.++....+. .+++..+ ..+++ +||+.+..+ ....++..+.++
T Consensus 304 reLalqie~e~~kysyng~ksvc~ygggnR~eq---ie~lkrg---veiii------atPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 304 RELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQ---IEDLKRG---VEIII------ATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred HHHHHHHHhHHhHhhhcCcceEEEecCCCchhH---HHHHhcC---ceEEe------eCCchHhhhhhcCeeeeeeeEEE
Confidence 9999876666555 36777777777655443 3344443 45544 455555544 345556678999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEe-ccCCCCc---ceeeeec
Q 009048 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPN---LFYEVRY 238 (545)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~n---i~~~v~~ 238 (545)
|+|||++|+++| |.|.++++ +....|+.++++.|||+++.+++ ...-.+++|.++. .+.+... +...+ .
T Consensus 372 VlDEADrMLDMg--FEpqIrki--lldiRPDRqtvmTSATWP~~Vrr--La~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~ 444 (629)
T KOG0336|consen 372 VLDEADRMLDMG--FEPQIRKI--LLDIRPDRQTVMTSATWPEGVRR--LAQSYLKEPMIVYVGSLDLVAVKSVKQNI-I 444 (629)
T ss_pred Eecchhhhhccc--ccHHHHHH--hhhcCCcceeeeecccCchHHHH--HHHHhhhCceEEEecccceeeeeeeeeeE-E
Confidence 999999999999 99999888 77888999999999999999988 4445567776543 3333211 11111 2
Q ss_pred ccchhhHHHHHHHHHHhC-CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc
Q 009048 239 KDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (545)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~-~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (545)
.....++++.+..++... ...++||||..+-.++.|...|.-.|+.+-.+||+-++.+|+..++.|++|+++|||||+.
T Consensus 445 v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDl 524 (629)
T KOG0336|consen 445 VTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDL 524 (629)
T ss_pred ecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEech
Confidence 233356777777777653 4578999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHH
Q 009048 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (545)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~ 375 (545)
+++|+|+|||.||++||+|.+++.|+||+||+||+|+.|.++.|+...|....+.++.
T Consensus 525 aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 525 ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred hhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887766554
No 32
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-44 Score=352.44 Aligned_cols=348 Identities=22% Similarity=0.329 Sum_probs=274.8
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---------
Q 009048 7 AMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------- 77 (545)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------- 77 (545)
|....+....|+.+.+++.+++++.+ .||+.++-+|..||+.+++|+|+++.|.||||||++|++|.++.
T Consensus 11 ~~~ee~~~ktFe~~gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~ 89 (569)
T KOG0346|consen 11 PQVEESKEKTFEEFGLDSRLLKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTND 89 (569)
T ss_pred cchhhhhhccHHHhCCCHHHHHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccc
Confidence 34445556789999999999999997 79999999999999999999999999999999999999999852
Q ss_pred ---CCeEEEEcChHHHHHHHHHHHHHc------CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHH
Q 009048 78 ---PGIVLVVSPLIALMENQVIGLKEK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148 (545)
Q Consensus 78 ---~~~~lVi~P~~aL~~qq~~~l~~~------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~ 148 (545)
+..++|++||++|++|....+.++ .+.+.-+.+..+........ .+. .+|+++||-.+ .
T Consensus 90 ~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L----~d~--pdIvV~TP~~l------l 157 (569)
T KOG0346|consen 90 GEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVAL----MDL--PDIVVATPAKL------L 157 (569)
T ss_pred ccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHH----ccC--CCeEEeChHHH------H
Confidence 467999999999998877776553 23444444444444333222 222 45555555433 2
Q ss_pred HHHh---hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEe
Q 009048 149 KLKK---IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (545)
Q Consensus 149 ~l~~---~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~ 224 (545)
.+.. ......+.++|+||||.+..+| |. ..+..+...+| ..+.++||||++.++.. .+.+.+.+|+++.
T Consensus 158 ~~~~~~~~~~~~~l~~LVvDEADLllsfG--Ye---edlk~l~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~nPviLk 230 (569)
T KOG0346|consen 158 RHLAAGVLEYLDSLSFLVVDEADLLLSFG--YE---EDLKKLRSHLPRIYQCFLMSATLSDDVQA--LKKLFLHNPVILK 230 (569)
T ss_pred HHHhhccchhhhheeeEEechhhhhhhcc--cH---HHHHHHHHhCCchhhheeehhhhhhHHHH--HHHHhccCCeEEE
Confidence 2211 1234458899999999999999 44 45666677776 57889999999999887 7888899999876
Q ss_pred ccC---CC-Ccc-eeeeecccchhhHHHHHHHHHHh-CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHH
Q 009048 225 SSF---NR-PNL-FYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298 (545)
Q Consensus 225 ~~~---~r-~ni-~~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~ 298 (545)
..- .. .++ .|.+.. ...+++..+..+++- .-.+++|||+||++.|-.+.-.|.+-|++.+.++|.|+...|.
T Consensus 231 l~e~el~~~dqL~Qy~v~c--se~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~ 308 (569)
T KOG0346|consen 231 LTEGELPNPDQLTQYQVKC--SEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRC 308 (569)
T ss_pred eccccCCCcccceEEEEEe--ccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchh
Confidence 432 11 222 233332 256777777766653 2346799999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEecc-----------------------------------ccccccccCCCcEEEEeCCCCCHHHHH
Q 009048 299 SVLDDWISSRKQVVVATV-----------------------------------AFGMGIDRKDVRLVCHFNIPKSMEAFY 343 (545)
Q Consensus 299 ~~~~~f~~g~~~VLVaT~-----------------------------------a~~~GiD~p~v~~VI~~~~p~s~~~y~ 343 (545)
.++++|..|-+++||||+ -.++|||+.+|..|++||+|.+...|+
T Consensus 309 Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYI 388 (569)
T KOG0346|consen 309 HIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYI 388 (569)
T ss_pred hHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHH
Confidence 999999999999999998 235899999999999999999999999
Q ss_pred HHHhhccCCCCCCeEEEEeccccHH---HHHHHHHh
Q 009048 344 QESGRAGRDQLPSKSLLYYGMDDRR---RMEFILSK 376 (545)
Q Consensus 344 Qr~GRagR~g~~~~~i~~~~~~d~~---~~~~i~~~ 376 (545)
||+||++|.+++|.++.|+.|.+.. .++.++..
T Consensus 389 HRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 389 HRVGRTARGNNKGTALSFVSPKEEFGKESLESILKD 424 (569)
T ss_pred HhccccccCCCCCceEEEecchHHhhhhHHHHHHhh
Confidence 9999999999999999999999877 55555544
No 33
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-44 Score=360.02 Aligned_cols=348 Identities=22% Similarity=0.295 Sum_probs=267.6
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcC----------------
Q 009048 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK---------------- 77 (545)
Q Consensus 15 ~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g-~d~lv~apTGsGKTl~~~lp~l~~---------------- 77 (545)
-.|..+.++.++..+|.+ +||+.|+++|..+|+++..| .|++..|.||||||++|-+|++.+
T Consensus 181 sAW~~l~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred HHHhcCCCCHHHHHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 356667888999999997 89999999999999999999 699999999999999999999962
Q ss_pred ---CCeEEEEcChHHHHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHH
Q 009048 78 ---PGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL 150 (545)
Q Consensus 78 ---~~~~lVi~P~~aL~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l 150 (545)
....||++|||+|+.|..+++.. -+|.+..+.++........+... .| +| +++|||++..+
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p--~I------VVATPGRlwel 327 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RP--DI------VVATPGRLWEL 327 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CC--CE------EEecchHHHHH
Confidence 23599999999999999999877 47888888888877766665543 33 34 55666655444
Q ss_pred H-----hhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHh------CCCcCEEEEEcCCChh-------------
Q 009048 151 K-----KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY------LPDVPILALTATAAPK------------- 206 (545)
Q Consensus 151 ~-----~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~------~~~~~~l~lTAT~~~~------------- 206 (545)
. .+.+...+.++|+|||++|.+-|| |. .|..++.. .+..+.+.||||++-.
T Consensus 328 i~e~n~~l~~~k~vkcLVlDEaDRmvekgh-F~----Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~ 402 (731)
T KOG0347|consen 328 IEEDNTHLGNFKKVKCLVLDEADRMVEKGH-FE----ELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKD 402 (731)
T ss_pred HHhhhhhhhhhhhceEEEEccHHHHhhhcc-HH----HHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccc
Confidence 2 234456689999999999999997 54 33333333 2467899999998642
Q ss_pred -------hHHHHHHHhcCCC-CeEEeccCCCCc---ceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHH
Q 009048 207 -------VQKDVMESLCLQN-PLVLKSSFNRPN---LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (545)
Q Consensus 207 -------~~~~i~~~l~~~~-~~~~~~~~~r~n---i~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~ 275 (545)
....++..+++.. |.++........ +......+.. .++--.|..++..++ +++|||||+++.+.+|+
T Consensus 403 k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~-~eKD~ylyYfl~ryP-GrTlVF~NsId~vKRLt 480 (731)
T KOG0347|consen 403 KEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPP-LEKDLYLYYFLTRYP-GRTLVFCNSIDCVKRLT 480 (731)
T ss_pred hhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCc-cccceeEEEEEeecC-CceEEEechHHHHHHHH
Confidence 2334455566654 344433221100 0000000000 000011122233344 57999999999999999
Q ss_pred HHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCC
Q 009048 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 355 (545)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~ 355 (545)
-.|...+++...+|+.|.++.|...+++|++....|||||+++++|+|+|+|.|||||..|.+.+.|+||+||++|++..
T Consensus 481 ~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~ 560 (731)
T KOG0347|consen 481 VLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE 560 (731)
T ss_pred HHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeccccHHHHHHHHHhcccCCC
Q 009048 356 SKSLLYYGMDDRRRMEFILSKNQSKNS 382 (545)
Q Consensus 356 ~~~i~~~~~~d~~~~~~i~~~~~~~~~ 382 (545)
|..+++++|.++..+..+-+....+..
T Consensus 561 Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 561 GVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred CeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 999999999999888887776554443
No 34
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-44 Score=341.07 Aligned_cols=344 Identities=23% Similarity=0.306 Sum_probs=271.7
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCC------CeEEEEcC
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP------GIVLVVSP 86 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~------~~~lVi~P 86 (545)
....|+++.+..++...+.+ .||+.|.|+|+++|+.++.|+|+++.|..|+|||.+|.+|.+.+- -.++|++|
T Consensus 83 kG~efEd~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVP 161 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVP 161 (459)
T ss_pred cCccHHHhhhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEee
Confidence 35567888889999888887 599999999999999999999999999999999999999999752 35899999
Q ss_pred hHHHHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH--hhhccCCcc
Q 009048 87 LIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLN 160 (545)
Q Consensus 87 ~~aL~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~--~~~~~~~l~ 160 (545)
|++|+.|..+.++. .|+.+....++.+... ++..-.....+ +++|||+...+. .........
T Consensus 162 trelALQtSqvc~~lskh~~i~vmvttGGT~lrD------DI~Rl~~~VH~------~vgTPGRIlDL~~KgVa~ls~c~ 229 (459)
T KOG0326|consen 162 TRELALQTSQVCKELSKHLGIKVMVTTGGTSLRD------DIMRLNQTVHL------VVGTPGRILDLAKKGVADLSDCV 229 (459)
T ss_pred cchhhHHHHHHHHHHhcccCeEEEEecCCccccc------ceeeecCceEE------EEcCChhHHHHHhcccccchhce
Confidence 99999887777665 4666666665554321 22221222344 455666555553 233455578
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec--cCCCC--cceee
Q 009048 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRP--NLFYE 235 (545)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~--~~~r~--ni~~~ 235 (545)
++|+|||+.+.+ .+|-+.... +...+| ..+++++|||.|-.+..-+.+. +.+|..+.. ..... .-+|.
T Consensus 230 ~lV~DEADKlLs--~~F~~~~e~---li~~lP~~rQillySATFP~tVk~Fm~~~--l~kPy~INLM~eLtl~GvtQyYa 302 (459)
T KOG0326|consen 230 ILVMDEADKLLS--VDFQPIVEK---LISFLPKERQILLYSATFPLTVKGFMDRH--LKKPYEINLMEELTLKGVTQYYA 302 (459)
T ss_pred EEEechhhhhhc--hhhhhHHHH---HHHhCCccceeeEEecccchhHHHHHHHh--ccCcceeehhhhhhhcchhhhee
Confidence 999999999987 457766555 455566 6889999999999887755554 456665432 11111 22333
Q ss_pred eecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEec
Q 009048 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (545)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT 315 (545)
++.. ..++.-|..++....-...|||||+.+.+|-+|+.+.+.|++|.++|+.|-++.|..++..|++|.++.||||
T Consensus 303 fV~e---~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVct 379 (459)
T KOG0326|consen 303 FVEE---RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCT 379 (459)
T ss_pred eech---hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeeh
Confidence 3322 3455555555555555578999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhccc
Q 009048 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (545)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~ 379 (545)
+.|.+|||++.|.+||+||+|++.++|+||+||+||.|..|.++-+++.+|+..+..|+.+.+.
T Consensus 380 DL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGt 443 (459)
T KOG0326|consen 380 DLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGT 443 (459)
T ss_pred hhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999888887654
No 35
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-43 Score=356.62 Aligned_cols=339 Identities=20% Similarity=0.304 Sum_probs=264.4
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----------------CC
Q 009048 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------------PG 79 (545)
Q Consensus 16 ~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----------------~~ 79 (545)
.|..-.+.+.+...++. -|++.++|+|+-+|+.+..|+|.+++|+||+|||.+|++|++.. .+
T Consensus 75 ~f~~~~l~~~l~~ni~~-~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKR-SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhcccc-ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 44455666777777775 69999999999999999999999999999999999999999842 26
Q ss_pred eEEEEcChHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh--h
Q 009048 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--I 153 (545)
Q Consensus 80 ~~lVi~P~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~ 153 (545)
.++|++||++|+.|.+++.+++ ++....+.++...... ...+ ...++|+++||- .+..+.+ .
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q---~~~~---~~gcdIlvaTpG------rL~d~~e~g~ 221 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQ---LRFI---KRGCDILVATPG------RLKDLIERGK 221 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhh---hhhh---ccCccEEEecCc------hhhhhhhcce
Confidence 7999999999999999998884 3455555544322221 1112 223667666554 4333422 2
Q ss_pred hccCCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhC--CCcCEEEEEcCCChhhHHHHHHHhcCCCCe---EEeccC
Q 009048 154 HSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNPL---VLKSSF 227 (545)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~--~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~---~~~~~~ 227 (545)
..+..+.++|+|||+.|.+ +| |-|.++.+..-.... ...+.++||||.+......+...+. .+.. +-+.+.
T Consensus 222 i~l~~~k~~vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~-~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLK-DNYIFLAVGRVGS 298 (482)
T ss_pred eehhhCcEEEecchHHhhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhh-ccceEEEEeeecc
Confidence 2244578999999999999 77 888877765433333 3678899999999998884444332 2222 334566
Q ss_pred CCCcceeeeecccchhhHHHHHHHHHHhCC----Cc-----cEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHH
Q 009048 228 NRPNLFYEVRYKDLLDDAYADLCSVLKANG----DT-----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298 (545)
Q Consensus 228 ~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~----~~-----~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~ 298 (545)
...|+...+..... .++...|.+++.... .+ .++|||.|++.|..++..|...++++..+||..++.+|.
T Consensus 299 ~~~ni~q~i~~V~~-~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~ 377 (482)
T KOG0335|consen 299 TSENITQKILFVNE-MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIERE 377 (482)
T ss_pred ccccceeEeeeecc-hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHH
Confidence 77788777766643 355666666665322 22 799999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHH
Q 009048 299 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371 (545)
Q Consensus 299 ~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~ 371 (545)
+.++.|+.|+++|||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|..|.++.|++..+....+
T Consensus 378 ~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~ 450 (482)
T KOG0335|consen 378 QALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAK 450 (482)
T ss_pred HHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999966654433
No 36
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=8.4e-41 Score=375.70 Aligned_cols=321 Identities=21% Similarity=0.214 Sum_probs=253.9
Q ss_pred CCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHh---cCCCeEEEEcChHH
Q 009048 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89 (545)
Q Consensus 19 ~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g------~d~lv~apTGsGKTl~~~lp~l---~~~~~~lVi~P~~a 89 (545)
+++.+..+...+.+.|||+ +++.|.+||+.++++ .|++++||||+|||.+|++|++ ..+..++|++||++
T Consensus 433 ~~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~ 511 (926)
T TIGR00580 433 AFPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTL 511 (926)
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHH
Confidence 4556677888888889996 999999999999875 6999999999999999998876 45788999999999
Q ss_pred HHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEe
Q 009048 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (545)
Q Consensus 90 L~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViD 165 (545)
|+.|+++.+++ +++.+..+++..+...+......+..+. .+|+++||..+. +......++++|||
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~--~dIVIGTp~ll~---------~~v~f~~L~llVID 580 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK--IDILIGTHKLLQ---------KDVKFKDLGLLIID 580 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC--ceEEEchHHHhh---------CCCCcccCCEEEee
Confidence 99999999887 3677788888887777777777777664 678888885432 22234568999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc-CCCCcceeeeecccchhh
Q 009048 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLLDD 244 (545)
Q Consensus 166 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~ni~~~v~~~~~~~~ 244 (545)
|+|++ |...+ ..+....+++++++||||+.+.... ....++.++.++... ..+..+...+.... ...
T Consensus 581 Eahrf---gv~~~------~~L~~~~~~~~vL~~SATpiprtl~--~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~-~~~ 648 (926)
T TIGR00580 581 EEQRF---GVKQK------EKLKELRTSVDVLTLSATPIPRTLH--MSMSGIRDLSIIATPPEDRLPVRTFVMEYD-PEL 648 (926)
T ss_pred ccccc---chhHH------HHHHhcCCCCCEEEEecCCCHHHHH--HHHhcCCCcEEEecCCCCccceEEEEEecC-HHH
Confidence 99993 43322 2344445688999999999888765 344566676665543 33444433333221 111
Q ss_pred HHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccccccc
Q 009048 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (545)
Q Consensus 245 ~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~Gi 322 (545)
....+...+. .+++++|||++++.++.+++.|++. ++++..+||+|++++|..++++|.+|+++|||||+++++||
T Consensus 649 i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GI 726 (926)
T TIGR00580 649 VREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGI 726 (926)
T ss_pred HHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccc
Confidence 2233333333 3568999999999999999999984 78899999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEeCCCC-CHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 323 DRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 323 D~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
|+|++++||+++.|. +..+|+|++||+||.|+.|.|++++.+.
T Consensus 727 DIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 727 DIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999875 7889999999999999999999999654
No 37
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.1e-40 Score=375.92 Aligned_cols=324 Identities=22% Similarity=0.288 Sum_probs=231.2
Q ss_pred hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------------CCeEEEEcChHH
Q 009048 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLVVSPLIA 89 (545)
Q Consensus 22 ~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~~~~lVi~P~~a 89 (545)
+++.+.+.+++ +|..|+|+|.++++.+++|+|++++||||||||++|++|++.. +..+|||+||++
T Consensus 18 l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 34667777766 6778999999999999999999999999999999999998731 236999999999
Q ss_pred HHHHHHHHHHH---------------c-CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhh
Q 009048 90 LMENQVIGLKE---------------K-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153 (545)
Q Consensus 90 L~~qq~~~l~~---------------~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~ 153 (545)
|+.|+...+.. . ++.+...++......+..... ...+|+++|||.+..--....+.
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~------~~p~IlVtTPE~L~~ll~~~~~~-- 167 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK------KPPHILITTPESLAILLNSPKFR-- 167 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh------CCCCEEEecHHHHHHHhcChhHH--
Confidence 99999876542 1 455666777766655543322 13689999999763210000111
Q ss_pred hccCCccEEEEecccccccc--CCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcC------CCCe-EE
Q 009048 154 HSRGLLNLVAIDEAHCISSW--GHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL------QNPL-VL 223 (545)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~~--g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~------~~~~-~~ 223 (545)
..+..+++|||||||.+.+. |..+...+.+ +.... +..+++++|||+++. .++...+.. ..+. ++
T Consensus 168 ~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~r---L~~l~~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~~~iv 242 (876)
T PRK13767 168 EKLRTVKWVIVDEIHSLAENKRGVHLSLSLER---LEELAGGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRDCEIV 242 (876)
T ss_pred HHHhcCCEEEEechhhhccCccHHHHHHHHHH---HHHhcCCCCeEEEEecccCCH--HHHHHHhcCccccCCCCceEEE
Confidence 12345899999999999853 3333333333 33333 467899999999873 334444443 2222 22
Q ss_pred eccCCCCcceeeee-c---------ccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC------CCcEEE
Q 009048 224 KSSFNRPNLFYEVR-Y---------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------GISCAA 287 (545)
Q Consensus 224 ~~~~~r~ni~~~v~-~---------~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~------g~~~~~ 287 (545)
...+.++ +...+. + .......+..+.++++. ++++||||+|++.|+.++..|.+. +..+..
T Consensus 243 ~~~~~k~-~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~ 319 (876)
T PRK13767 243 DARFVKP-FDIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGA 319 (876)
T ss_pred ccCCCcc-ceEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceee
Confidence 2222211 111111 0 00112233444555443 457999999999999999999873 467999
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCC-CCCCeEEEEec
Q 009048 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYYG 363 (545)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~-g~~~~~i~~~~ 363 (545)
+||+|++++|..+++.|++|+++|||||+++++|||+|+|++||+++.|.|+..|+||+||+||. |..+.++++..
T Consensus 320 hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 320 HHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred eeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999986 44455555543
No 38
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=6.1e-41 Score=392.42 Aligned_cols=335 Identities=16% Similarity=0.217 Sum_probs=261.2
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHH
Q 009048 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (545)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~ 99 (545)
-+++.+.+++.+|| +|++.|.++++.++.|+|++++||||+|||++++++++. .+..+|||+||++|+.|+++.++
T Consensus 65 ~~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~ 143 (1638)
T PRK14701 65 VEEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIE 143 (1638)
T ss_pred HHHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHH
Confidence 45667788888999 599999999999999999999999999999988877664 35689999999999999999998
Q ss_pred Hc------CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccccc
Q 009048 100 EK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (545)
Q Consensus 100 ~~------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (545)
.+ ++.+..++++.+...+......+..+. .+|+++||+.+... ... .. ...+++|||||||++++|
T Consensus 144 ~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~--~dILV~TPgrL~~~--~~~---l~-~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 144 SFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD--FDILVTTAQFLARN--FPE---MK-HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECCchhHHh--HHH---Hh-hCCCCEEEEECceecccc
Confidence 84 456677888888877776666666553 67999999865421 111 11 155899999999999999
Q ss_pred CC---------CCHHHHHH----H-------------------HHHHHhCCCcC--EEEEEcCCChhhHHHHHHHhcCCC
Q 009048 174 GH---------DFRPSYRK----L-------------------SSLRNYLPDVP--ILALTATAAPKVQKDVMESLCLQN 219 (545)
Q Consensus 174 g~---------~fr~~~~~----l-------------------~~l~~~~~~~~--~l~lTAT~~~~~~~~i~~~l~~~~ 219 (545)
|+ +|++++.. + ......+|..+ ++.+|||.++. .++...+ .+
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~--~~ 291 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLY--RE 291 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHh--hc
Confidence 98 89999864 2 11122345443 46688888864 2333333 56
Q ss_pred CeEEeccCCCCcceeeeecc-cchhhHHHHHHHHHHhCCCccEEEEecchhh---HHHHHHHHHhCCCcEEEecCCCCHH
Q 009048 220 PLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLNDK 295 (545)
Q Consensus 220 ~~~~~~~~~r~ni~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~---~~~l~~~L~~~g~~~~~~h~~l~~~ 295 (545)
+..+..+..++++...+... .........+.++++..+ ..+||||+|++. |+.+++.|.+.|+++..+||+
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~~g-~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~---- 366 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPEKIIKEHVRELLKKLG-KGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK---- 366 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECCHHHHHHHHHHHHhCC-CCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch----
Confidence 66666666666544322221 011121246777777664 579999999886 589999999999999999995
Q ss_pred HHHHHHHHHHcCCCcEEEecc----ccccccccCC-CcEEEEeCCCC---CHHHHHHHH-------------hhccCCCC
Q 009048 296 ARSSVLDDWISSRKQVVVATV----AFGMGIDRKD-VRLVCHFNIPK---SMEAFYQES-------------GRAGRDQL 354 (545)
Q Consensus 296 ~R~~~~~~f~~g~~~VLVaT~----a~~~GiD~p~-v~~VI~~~~p~---s~~~y~Qr~-------------GRagR~g~ 354 (545)
|...+++|++|+++|||||+ .++||||+|+ |++|||||+|+ |++.|+|.. ||+||+|.
T Consensus 367 -R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 367 -NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred -HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCC
Confidence 88999999999999999995 7789999999 99999999999 999999988 99999999
Q ss_pred CCeEEEEeccccHHHHHHHHHh
Q 009048 355 PSKSLLYYGMDDRRRMEFILSK 376 (545)
Q Consensus 355 ~~~~i~~~~~~d~~~~~~i~~~ 376 (545)
++.+++.+...+...++.+++.
T Consensus 446 ~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 446 PIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred cchhHHHhHHHHHHHHHHHhcc
Confidence 9999988888888888877664
No 39
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.5e-42 Score=336.67 Aligned_cols=332 Identities=21% Similarity=0.368 Sum_probs=256.7
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc--------------CCC
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------------KPG 79 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~--------------~~~ 79 (545)
...|..+..+..+.+.|++ -|+.+|+|+|.+.++.++.|+|+|.+|-||||||++|.+|.+. .++
T Consensus 169 IksF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP 247 (610)
T KOG0341|consen 169 IKSFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGP 247 (610)
T ss_pred hhhhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCC
Confidence 3445556666889999998 6999999999999999999999999999999999999999763 267
Q ss_pred eEEEEcChHHHHHHHHHHHHH-------cCCc---eeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHH
Q 009048 80 IVLVVSPLIALMENQVIGLKE-------KGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149 (545)
Q Consensus 80 ~~lVi~P~~aL~~qq~~~l~~-------~gi~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~ 149 (545)
..|||||+++|+.|..+-+.. .|.+ +..-.++......... +..+ +.++ ++||+++..
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~---v~~G---vHiv------VATPGRL~D 315 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDV---VRRG---VHIV------VATPGRLMD 315 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHH---HhcC---eeEE------EcCcchHHH
Confidence 899999999999876655433 3332 2222233343333222 2222 5554 455555444
Q ss_pred H--HhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc-
Q 009048 150 L--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS- 226 (545)
Q Consensus 150 l--~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~- 226 (545)
+ .+..++.-.+++++|||+++.++| |..+++.+-.+.. ...+.++||||++...+. +..-.+-.|+.+..+
T Consensus 316 mL~KK~~sLd~CRyL~lDEADRmiDmG--FEddir~iF~~FK--~QRQTLLFSATMP~KIQ~--FAkSALVKPvtvNVGR 389 (610)
T KOG0341|consen 316 MLAKKIMSLDACRYLTLDEADRMIDMG--FEDDIRTIFSFFK--GQRQTLLFSATMPKKIQN--FAKSALVKPVTVNVGR 389 (610)
T ss_pred HHHHhhccHHHHHHhhhhhHHHHhhcc--chhhHHHHHHHHh--hhhheeeeeccccHHHHH--HHHhhcccceEEeccc
Confidence 4 233334446789999999999999 7766655533322 368899999999998765 555556778776543
Q ss_pred --CCCCcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH
Q 009048 227 --FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 304 (545)
Q Consensus 227 --~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f 304 (545)
...-++...+.+... +.++-.|++.+++. ..+++|||..+..++.+.++|--.|..++.+|||-++++|....+.|
T Consensus 390 AGAAsldViQevEyVkq-EaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~af 467 (610)
T KOG0341|consen 390 AGAASLDVIQEVEYVKQ-EAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAF 467 (610)
T ss_pred ccccchhHHHHHHHHHh-hhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHH
Confidence 223344444444332 45666677777654 35799999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEecccc
Q 009048 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (545)
Q Consensus 305 ~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d 366 (545)
+.|+.+|||||++++.|+|+|++.+||+||+|..+++|+||+||+||.|+.|.+.+|.+...
T Consensus 468 r~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 468 RAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred hcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999998664
No 40
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=7.2e-40 Score=363.30 Aligned_cols=317 Identities=21% Similarity=0.262 Sum_probs=247.5
Q ss_pred hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHH
Q 009048 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (545)
Q Consensus 22 ~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g------~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~ 92 (545)
....+.+.+...|+|. |++.|.++++.+..+ .+++++||||||||++|++|++. .+..++|++||++|+.
T Consensus 246 ~~~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~ 324 (681)
T PRK10917 246 YDGELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAE 324 (681)
T ss_pred CChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHH
Confidence 3466777777889996 999999999999876 47999999999999999998864 5678999999999999
Q ss_pred HHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 009048 93 NQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (545)
Q Consensus 93 qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (545)
|+++.++++ |+.+..++++.....+......+..+. .+|+++||..+... .....++++||||+|
T Consensus 325 Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll~~~---------v~~~~l~lvVIDE~H 393 (681)
T PRK10917 325 QHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE--ADIVIGTHALIQDD---------VEFHNLGLVIIDEQH 393 (681)
T ss_pred HHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC--CCEEEchHHHhccc---------chhcccceEEEechh
Confidence 999998763 688999999999888888888877764 77888887655321 124558999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec-cCCCCcceeeeecccchhhHHH
Q 009048 169 CISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYA 247 (545)
Q Consensus 169 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~ni~~~v~~~~~~~~~~~ 247 (545)
++ |...|. .+.......++++||||+.+.... ....+..+...+.. +..+..+...+.........+.
T Consensus 394 rf---g~~qr~------~l~~~~~~~~iL~~SATp~prtl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~ 462 (681)
T PRK10917 394 RF---GVEQRL------ALREKGENPHVLVMTATPIPRTLA--MTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYE 462 (681)
T ss_pred hh---hHHHHH------HHHhcCCCCCEEEEeCCCCHHHHH--HHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHH
Confidence 85 433333 233444468899999999887654 23334334433332 3334445444444333333444
Q ss_pred HHHHHHHhCCCccEEEEecch--------hhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc
Q 009048 248 DLCSVLKANGDTCAIVYCLER--------TTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (545)
Q Consensus 248 ~l~~~l~~~~~~~~IIf~~t~--------~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (545)
.+...+. .+.+++|||+++ ..++.+++.|.+. ++++..+||+|++++|..++++|++|+++|||||++
T Consensus 463 ~i~~~~~--~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v 540 (681)
T PRK10917 463 RIREEIA--KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTV 540 (681)
T ss_pred HHHHHHH--cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcc
Confidence 4544443 356899999964 3566778888765 578999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEeCCCC-CHHHHHHHHhhccCCCCCCeEEEEec
Q 009048 318 FGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYG 363 (545)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~~~~i~~~~ 363 (545)
+++|||+|++++||+++.|. +...|.|++||+||.|.+|.|++++.
T Consensus 541 ie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 541 IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred eeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999999999999997 68899999999999999999999995
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-40 Score=373.39 Aligned_cols=330 Identities=21% Similarity=0.291 Sum_probs=244.5
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHH
Q 009048 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (545)
Q Consensus 17 ~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~-il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~ 92 (545)
++.+++++.+.+.+++ .|+.+|+|+|.++++. +..|+|++++||||||||++|.+|++. .++++|||+|+++|+.
T Consensus 3 ~~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~ 81 (737)
T PRK02362 3 IAELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALAS 81 (737)
T ss_pred hhhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHH
Confidence 5667788999999987 7999999999999998 778999999999999999999999775 5789999999999999
Q ss_pred HHHHHHHHc---CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc
Q 009048 93 NQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (545)
Q Consensus 93 qq~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (545)
|++..++.+ |+.+..+.+....... .+ ...+|+++|||.+..-- . ........+++|||||+|.
T Consensus 82 q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l----~~~~IiV~Tpek~~~ll--r--~~~~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 82 EKFEEFERFEELGVRVGISTGDYDSRDE-----WL----GDNDIIVATSEKVDSLL--R--NGAPWLDDITCVVVDEVHL 148 (737)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc----CCCCEEEECHHHHHHHH--h--cChhhhhhcCEEEEECccc
Confidence 999999886 7777776655432211 01 13678888888653311 0 0011234589999999999
Q ss_pred ccccCCCCHHHHHH-HHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCC------CeEEecc-CCCCcceeee----e
Q 009048 170 ISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN------PLVLKSS-FNRPNLFYEV----R 237 (545)
Q Consensus 170 i~~~g~~fr~~~~~-l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~------~~~~~~~-~~r~ni~~~v----~ 237 (545)
+.+.+ +.+.+.. +..++...++.++++||||++.. .++..+++... |..+... .....+.+.. .
T Consensus 149 l~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~ 224 (737)
T PRK02362 149 IDSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREV 224 (737)
T ss_pred cCCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccC
Confidence 98743 5566655 34556666789999999999763 45566665321 1111000 0000000000 0
Q ss_pred cccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCC-----------------------------------
Q 009048 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG----------------------------------- 282 (545)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g----------------------------------- 282 (545)
........+..+.+.+. .++++||||+|++.|+.++..|....
T Consensus 225 ~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 302 (737)
T PRK02362 225 EVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCV 302 (737)
T ss_pred CCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHH
Confidence 00111233344444443 45689999999999999998886431
Q ss_pred -CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEE----eC-----CCCCHHHHHHHHhhccCC
Q 009048 283 -ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-----IPKSMEAFYQESGRAGRD 352 (545)
Q Consensus 283 -~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~----~~-----~p~s~~~y~Qr~GRagR~ 352 (545)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|.+++||+ |+ .|.+..+|.||+|||||.
T Consensus 303 ~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 303 AKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred HhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 36789999999999999999999999999999999999999999999997 65 688999999999999999
Q ss_pred CCC--CeEEEEecccc
Q 009048 353 QLP--SKSLLYYGMDD 366 (545)
Q Consensus 353 g~~--~~~i~~~~~~d 366 (545)
|.. |.+++++...+
T Consensus 383 g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 383 GLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCCceEEEEecCch
Confidence 975 88999987653
No 42
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-40 Score=321.24 Aligned_cols=352 Identities=19% Similarity=0.242 Sum_probs=277.3
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------C
Q 009048 7 AMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------P 78 (545)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~lp~l~~------~ 78 (545)
|-+.+.|...|+.+.+.+++.+.|.. ++|..|+.+|+.|++.++.. ++.|.++..|+|||.||.+.+|.+ .
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~ 160 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVV 160 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccC
Confidence 55667788899999999999999997 89999999999999999975 799999999999999999999976 4
Q ss_pred CeEEEEcChHHHHHHHHHHHHHcCCce----eEecccccHHHHHHHHHhhhcC-CCCccEEEECcccccChhhHHHHHhh
Q 009048 79 GIVLVVSPLIALMENQVIGLKEKGIAG----EFLSSTQTMQVKTKIYEDLDSG-KPSLRLLYVTPELTATPGFMSKLKKI 153 (545)
Q Consensus 79 ~~~lVi~P~~aL~~qq~~~l~~~gi~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~~tpe~~~t~~~~~~l~~~ 153 (545)
+.++.|+|+++|+.|..+.+.++|-.. .+...+.. ...| .-.-+|+++||-.+.. +... .+.
T Consensus 161 PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk----------~~rG~~i~eqIviGTPGtv~D--lm~k-lk~ 227 (477)
T KOG0332|consen 161 PQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK----------AKRGNKLTEQIVIGTPGTVLD--LMLK-LKC 227 (477)
T ss_pred CCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc----------cccCCcchhheeeCCCccHHH--HHHH-HHh
Confidence 678999999999999999999987544 22211110 0111 1124565555554422 1111 133
Q ss_pred hccCCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec-cCCCC
Q 009048 154 HSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRP 230 (545)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~ 230 (545)
.....+..+|+|||+.+.+ .| |+..-. .+....| +.+++++|||....+..-....+.-.++.+++. .....
T Consensus 228 id~~kikvfVlDEAD~Mi~tqG--~~D~S~---rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~ 302 (477)
T KOG0332|consen 228 IDLEKIKVFVLDEADVMIDTQG--FQDQSI---RIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALD 302 (477)
T ss_pred hChhhceEEEecchhhhhhccc--ccccch---hhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcccc
Confidence 4455689999999998876 34 333222 3444455 899999999999988775555544334444433 45566
Q ss_pred cceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCc
Q 009048 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (545)
Q Consensus 231 ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (545)
+++.-+......+++++.|.++.....-++.||||.|+..+..++..|.+.|..+..+||.|..++|..+.++|++|..+
T Consensus 303 ~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k 382 (477)
T KOG0332|consen 303 NIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK 382 (477)
T ss_pred chhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce
Confidence 66666666667789999999987766677899999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccccCCCcEEEEeCCCC------CHHHHHHHHhhccCCCCCCeEEEEeccc-cHHHHHHHHHhc
Q 009048 311 VVVATVAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKN 377 (545)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~------s~~~y~Qr~GRagR~g~~~~~i~~~~~~-d~~~~~~i~~~~ 377 (545)
|||+|+++++|||++.|..||+||+|- +.+.|+||+||+||.|+.|.++-+++.. +...+..|.+.-
T Consensus 383 VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F 456 (477)
T KOG0332|consen 383 VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHF 456 (477)
T ss_pred EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHH
Confidence 999999999999999999999999995 7899999999999999999999888755 456666665543
No 43
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-40 Score=328.28 Aligned_cols=347 Identities=19% Similarity=0.275 Sum_probs=283.3
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCeE
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIV 81 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~~~~ 81 (545)
+...|+-++.++.|..++.+ --|.+++|+|.++++..+.|+|++.+|-||||||.+|++|++.. ++..
T Consensus 221 pvtsfeh~gfDkqLm~airk-~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~ 299 (731)
T KOG0339|consen 221 PVTSFEHFGFDKQLMTAIRK-SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIG 299 (731)
T ss_pred CcchhhhcCchHHHHHHHhh-hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeE
Confidence 44556667777888888876 58899999999999999999999999999999999999999842 5688
Q ss_pred EEEcChHHHHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH--hhhc
Q 009048 82 LVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHS 155 (545)
Q Consensus 82 lVi~P~~aL~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~--~~~~ 155 (545)
||++||++|+.|.....++ +|+..++++++.+..+....+ .. ...++++ ||+++-.+. +..+
T Consensus 300 vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~L---k~---g~EivVa------TPgRlid~VkmKatn 367 (731)
T KOG0339|consen 300 VILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKEL---KE---GAEIVVA------TPGRLIDMVKMKATN 367 (731)
T ss_pred EEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhh---hc---CCeEEEe------chHHHHHHHHhhccc
Confidence 9999999999999888776 478899998888776554332 22 2445444 555444443 3344
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec-cC--CCCcc
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SF--NRPNL 232 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~-~~--~r~ni 232 (545)
+.++.++|+|||++|.+.| |.+..+.|.. ...|+.+.|+||||....+.+.....| .+|+.+.. +. ....|
T Consensus 368 ~~rvS~LV~DEadrmfdmG--fe~qVrSI~~--hirpdrQtllFsaTf~~kIe~lard~L--~dpVrvVqg~vgean~dI 441 (731)
T KOG0339|consen 368 LSRVSYLVLDEADRMFDMG--FEPQVRSIKQ--HIRPDRQTLLFSATFKKKIEKLARDIL--SDPVRVVQGEVGEANEDI 441 (731)
T ss_pred ceeeeEEEEechhhhhccc--cHHHHHHHHh--hcCCcceEEEeeccchHHHHHHHHHHh--cCCeeEEEeehhccccch
Confidence 5668999999999999999 8887777643 234799999999999998877555544 45553332 22 23445
Q ss_pred eeeeecccchhhHHHHHHHHHHh-CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 009048 233 FYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (545)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (545)
...|......+.++..|...|.. ...+++|||+.-+..++.++..|...|+++..+||++.+.+|.+++.+|+++..+|
T Consensus 442 TQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~V 521 (731)
T KOG0339|consen 442 TQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPV 521 (731)
T ss_pred hheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCce
Confidence 56666666667788887776654 34568999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcc
Q 009048 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (545)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~ 378 (545)
||||+++.+|+|+|+++.||+||+..+++.|.||+||+||.|..|.+++|++..|......+.+...
T Consensus 522 lvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe 588 (731)
T KOG0339|consen 522 LVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLE 588 (731)
T ss_pred EEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999987777766543
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=5.2e-39 Score=354.23 Aligned_cols=316 Identities=20% Similarity=0.253 Sum_probs=238.7
Q ss_pred hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHH
Q 009048 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (545)
Q Consensus 22 ~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g------~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~ 92 (545)
....+...+.+.++| +|++.|.+||+.++.+ .+.+++||||||||++|++|++. .+..++|++||++|+.
T Consensus 220 ~~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 220 PSEELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAE 298 (630)
T ss_pred CChHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHH
Confidence 334555555566999 5999999999999876 25899999999999999988764 5778999999999999
Q ss_pred HHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 009048 93 NQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (545)
Q Consensus 93 qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (545)
|+.+.++++ |+++..++++.....+......+..+. .+++++||..+.. ......++++||||+|
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~--~~IiVgT~~ll~~---------~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ--IHLVVGTHALIQE---------KVEFKRLALVIIDEQH 367 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC--CCEEEecHHHHhc---------cccccccceEEEechh
Confidence 999998863 788999999988888888887777664 6788888875532 1234568999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhCC---CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEe-ccCCCCcceeeeecccchhh
Q 009048 169 CISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNLFYEVRYKDLLDD 244 (545)
Q Consensus 169 ~i~~~g~~fr~~~~~l~~l~~~~~---~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~ni~~~v~~~~~~~~ 244 (545)
++ |...|.. ++...+ ..++++||||+.+.... ....+.-+...+. .+..+..+...+........
T Consensus 368 ~f---g~~qr~~------l~~~~~~~~~~~~l~~SATp~prtl~--l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~ 436 (630)
T TIGR00643 368 RF---GVEQRKK------LREKGQGGFTPHVLVMSATPIPRTLA--LTVYGDLDTSIIDELPPGRKPITTVLIKHDEKDI 436 (630)
T ss_pred hc---cHHHHHH------HHHhcccCCCCCEEEEeCCCCcHHHH--HHhcCCcceeeeccCCCCCCceEEEEeCcchHHH
Confidence 84 4333332 333333 67899999999886544 2222222222222 22233334433333322222
Q ss_pred HHHHHHHHHHhCCCccEEEEecch--------hhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEe
Q 009048 245 AYADLCSVLKANGDTCAIVYCLER--------TTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (545)
Q Consensus 245 ~~~~l~~~l~~~~~~~~IIf~~t~--------~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (545)
.+..+.+.+. .+.+++|||++. ..++.+++.|.+. ++.+..+||+|++++|..++++|++|+.+||||
T Consensus 437 ~~~~i~~~l~--~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVa 514 (630)
T TIGR00643 437 VYEFIEEEIA--KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVA 514 (630)
T ss_pred HHHHHHHHHH--hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 3333333332 345799999876 4566778888763 788999999999999999999999999999999
Q ss_pred ccccccccccCCCcEEEEeCCCC-CHHHHHHHHhhccCCCCCCeEEEEe
Q 009048 315 TVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYY 362 (545)
Q Consensus 315 T~a~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~~~~i~~~ 362 (545)
|+++++|||+|++++||+++.|. +...|.|++||+||.|.+|.|++++
T Consensus 515 T~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 515 TTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 99999999999999999999987 7889999999999999999999999
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.3e-39 Score=369.13 Aligned_cols=320 Identities=21% Similarity=0.200 Sum_probs=247.3
Q ss_pred CCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHh---cCCCeEEEEcChHH
Q 009048 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89 (545)
Q Consensus 19 ~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g------~d~lv~apTGsGKTl~~~lp~l---~~~~~~lVi~P~~a 89 (545)
++.++..+...+...|+| .+++.|.+||+.++.+ .|+++++|||+|||.+|+.+++ ..+..++|++||++
T Consensus 582 ~~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~e 660 (1147)
T PRK10689 582 AFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 660 (1147)
T ss_pred CCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHH
Confidence 355567777778788999 5999999999999987 7999999999999999887764 45788999999999
Q ss_pred HHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEe
Q 009048 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (545)
Q Consensus 90 L~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViD 165 (545)
|+.|+++.+++ +++.+..+++..+..........+..+. .+|+++||+.+.. ......+++||||
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~--~dIVVgTp~lL~~---------~v~~~~L~lLVID 729 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK--IDILIGTHKLLQS---------DVKWKDLGLLIVD 729 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC--CCEEEECHHHHhC---------CCCHhhCCEEEEe
Confidence 99999999876 3467777888888877777777666554 6799999865421 1223458999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC-CCcceeeeecccchhh
Q 009048 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDLLDD 244 (545)
Q Consensus 166 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~-r~ni~~~v~~~~~~~~ 244 (545)
|+|++ |..+ ...+....+++++++||||+.+.+.. ....++.++.++..+.. +..+...+..... ..
T Consensus 730 Eahrf---G~~~------~e~lk~l~~~~qvLl~SATpiprtl~--l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~-~~ 797 (1147)
T PRK10689 730 EEHRF---GVRH------KERIKAMRADVDILTLTATPIPRTLN--MAMSGMRDLSIIATPPARRLAVKTFVREYDS-LV 797 (1147)
T ss_pred chhhc---chhH------HHHHHhcCCCCcEEEEcCCCCHHHHH--HHHhhCCCcEEEecCCCCCCCceEEEEecCc-HH
Confidence 99995 5322 23344445689999999999998765 33445677776655432 3333222222111 11
Q ss_pred HHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccccccc
Q 009048 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (545)
Q Consensus 245 ~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~Gi 322 (545)
....+...+. .+++++|||++++.++.+++.|.+. +..+..+||+|++.+|..++.+|++|+++|||||+++++||
T Consensus 798 ~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGI 875 (1147)
T PRK10689 798 VREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 (1147)
T ss_pred HHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccc
Confidence 1222222222 3467999999999999999999987 78899999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEeCCC-CCHHHHHHHHhhccCCCCCCeEEEEecc
Q 009048 323 DRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (545)
Q Consensus 323 D~p~v~~VI~~~~p-~s~~~y~Qr~GRagR~g~~~~~i~~~~~ 364 (545)
|+|+|++||..+.. .++..|+|++||+||.|+.|.|++++..
T Consensus 876 DIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred ccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999999955442 3567899999999999999999999854
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.2e-39 Score=352.78 Aligned_cols=322 Identities=25% Similarity=0.330 Sum_probs=258.1
Q ss_pred ChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---C--------CeEEEEcChHH
Q 009048 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---P--------GIVLVVSPLIA 89 (545)
Q Consensus 21 ~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~--------~~~lVi~P~~a 89 (545)
.+++.+.+.+++. |.+|||.|.+||+.+.+|++++++||||||||+++.+|++.. . -.+|+|+|++|
T Consensus 7 ~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 3467888899886 889999999999999999999999999999999999999742 1 25999999999
Q ss_pred HHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccc----cChhhHHHHHhhhccCCccE
Q 009048 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPGFMSKLKKIHSRGLLNL 161 (545)
Q Consensus 90 L~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~----~t~~~~~~l~~~~~~~~l~~ 161 (545)
|.+|...+|.. +|+++...++.++...+..... ...+|+++|||.+ ..+.+...+ ..+.+
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~------~PPdILiTTPEsL~lll~~~~~r~~l------~~vr~ 152 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLK------NPPHILITTPESLAILLNSPKFRELL------RDVRY 152 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccC------CCCcEEEeChhHHHHHhcCHHHHHHh------cCCcE
Confidence 99999999765 7899988888888877765432 2478999999944 334443333 34889
Q ss_pred EEEeccccccc--cCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCC-Ce-EEeccCCCCcceeeee
Q 009048 162 VAIDEAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN-PL-VLKSSFNRPNLFYEVR 237 (545)
Q Consensus 162 iViDEaH~i~~--~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~-~~-~~~~~~~r~ni~~~v~ 237 (545)
+||||.|.+.. .|... +..|.+++...++.+.++||||..+. .++.++|.... +. ++..+..+ +..+.+.
T Consensus 153 VIVDEiHel~~sKRG~~L---sl~LeRL~~l~~~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k-~~~i~v~ 226 (814)
T COG1201 153 VIVDEIHALAESKRGVQL---ALSLERLRELAGDFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAK-KLEIKVI 226 (814)
T ss_pred EEeehhhhhhccccchhh---hhhHHHHHhhCcccEEEeehhccCCH--HHHHHHhcCCCCceEEEEcccCC-cceEEEE
Confidence 99999999864 56442 24566667766788999999999866 45577777665 44 33333332 2322222
Q ss_pred -ccc-------chhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCC-CcEEEecCCCCHHHHHHHHHHHHcCC
Q 009048 238 -YKD-------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLNDKARSSVLDDWISSR 308 (545)
Q Consensus 238 -~~~-------~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g-~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (545)
+.. .....+..+.++++++. .+|||+|||..+|.++..|++.+ ..+..+||.++.+.|..+.++|++|+
T Consensus 227 ~p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~ 304 (814)
T COG1201 227 SPVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE 304 (814)
T ss_pred ecCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC
Confidence 111 12346677778877765 79999999999999999999986 88999999999999999999999999
Q ss_pred CcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccC-CCCCCeEEEEecc
Q 009048 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSKSLLYYGM 364 (545)
Q Consensus 309 ~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR-~g~~~~~i~~~~~ 364 (545)
.+++|||+.++.|||+.+|+.|||++.|.++..++||+||+|+ -|..+.++++...
T Consensus 305 lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 305 LKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999999999999999999996 4667888877655
No 47
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-39 Score=324.49 Aligned_cols=335 Identities=22% Similarity=0.294 Sum_probs=241.6
Q ss_pred HHHhcCCCCCCHHHHHHHHHHH---------cCCCEEEEcCCCchHHHHHHHHHhcC-------CCeEEEEcChHHHHHH
Q 009048 30 LRWHFGHAQFRDKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSPLIALMEN 93 (545)
Q Consensus 30 l~~~fg~~~~r~~Q~~~i~~il---------~g~d~lv~apTGsGKTl~~~lp~l~~-------~~~~lVi~P~~aL~~q 93 (545)
+++ .+++.+.|.|..+++.++ .++|+.|.||||||||+||.+|+++. .-++|||+|++.|+.|
T Consensus 152 l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~Q 230 (620)
T KOG0350|consen 152 LVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQ 230 (620)
T ss_pred HHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHH
Confidence 665 689999999999999986 25899999999999999999999852 2469999999999999
Q ss_pred HHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCC--CCccEEEECcccccChhhHHHHH--hhhccCCccEEEEe
Q 009048 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGK--PSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAID 165 (545)
Q Consensus 94 q~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~il~~tpe~~~t~~~~~~l~--~~~~~~~l~~iViD 165 (545)
.++.+..+ |+.+..+.+..+...... .+.... ..++|+++||..+.. .+. +...+..++++|||
T Consensus 231 V~~~f~~~~~~tgL~V~~~sgq~sl~~E~~---qL~~~~~~~~~DIlVaTPGRLVD-----Hl~~~k~f~Lk~LrfLVID 302 (620)
T KOG0350|consen 231 VYDTFKRLNSGTGLAVCSLSGQNSLEDEAR---QLASDPPECRIDILVATPGRLVD-----HLNNTKSFDLKHLRFLVID 302 (620)
T ss_pred HHHHHHHhccCCceEEEecccccchHHHHH---HHhcCCCccccceEEcCchHHHH-----hccCCCCcchhhceEEEec
Confidence 99999885 455444444433332222 222222 246777666654421 222 22234558999999
Q ss_pred ccccccccCCCCHHHH----------------------------HHHHHHHHh----CCCcCEEEEEcCCChhhHHHHHH
Q 009048 166 EAHCISSWGHDFRPSY----------------------------RKLSSLRNY----LPDVPILALTATAAPKVQKDVME 213 (545)
Q Consensus 166 EaH~i~~~g~~fr~~~----------------------------~~l~~l~~~----~~~~~~l~lTAT~~~~~~~~i~~ 213 (545)
|||++.+-. |.... ..+..+... +|....+.+|||++..-.+ ..
T Consensus 303 EADRll~qs--fQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~K--l~ 378 (620)
T KOG0350|consen 303 EADRLLDQS--FQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSK--LK 378 (620)
T ss_pred hHHHHHHHH--HHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHH--Hh
Confidence 999987511 11110 111122222 2333367888888766555 55
Q ss_pred HhcCCCCeEEeccC------CCCc-c-eeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHH----hC
Q 009048 214 SLCLQNPLVLKSSF------NRPN-L-FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS----AG 281 (545)
Q Consensus 214 ~l~~~~~~~~~~~~------~r~n-i-~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~----~~ 281 (545)
.+.+..|..+.... ..|. + .+.+.... .-+.-.+..++......++|+|+++.+.+.+++..|+ ..
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~--~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~ 456 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP--KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSD 456 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeeccc--ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccc
Confidence 56666664433221 1111 1 01111111 1223345566666677789999999999999999887 34
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEE
Q 009048 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (545)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~ 361 (545)
.+++..|.|+++.+.|...++.|..|+++|||||+++++|||+.+|+.||+||+|.+...|+||+||++|+|+.|.|+.+
T Consensus 457 ~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tl 536 (620)
T KOG0350|consen 457 NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITL 536 (620)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEe
Confidence 56777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHhccc
Q 009048 362 YGMDDRRRMEFILSKNQS 379 (545)
Q Consensus 362 ~~~~d~~~~~~i~~~~~~ 379 (545)
.+..+.+.+..+++....
T Consensus 537 l~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 537 LDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred eccccchHHHHHHHHhcc
Confidence 999999999999887653
No 48
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-39 Score=329.21 Aligned_cols=340 Identities=19% Similarity=0.261 Sum_probs=260.3
Q ss_pred CChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCeEEEEcChH
Q 009048 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLI 88 (545)
Q Consensus 20 ~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~~~~lVi~P~~ 88 (545)
...++.+++.+.. .||..++|.|.+|++.++.++|+++++|||+|||++|.+|++.+ +-+++|++|++
T Consensus 141 ~~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptr 219 (593)
T KOG0344|consen 141 YSMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTR 219 (593)
T ss_pred hhhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchH
Confidence 3345667777776 69999999999999999999999999999999999999999852 34799999999
Q ss_pred HHHHHHHHHHHHcCCc------eeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhh----hccCC
Q 009048 89 ALMENQVIGLKEKGIA------GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGL 158 (545)
Q Consensus 89 aL~~qq~~~l~~~gi~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~----~~~~~ 158 (545)
+|+.|....+.++.+. +..+........+..... . ..+++++.||- .+..+... .....
T Consensus 220 eLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~---~--~k~dili~TP~------ri~~~~~~~~~~idl~~ 288 (593)
T KOG0344|consen 220 ELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLS---D--EKYDILISTPM------RIVGLLGLGKLNIDLSK 288 (593)
T ss_pred HHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhH---H--HHHHHHhcCHH------HHHHHhcCCCccchhhe
Confidence 9999999999987643 111111111111111111 1 12455555554 33333322 23455
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC---CCcceee
Q 009048 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYE 235 (545)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~ni~~~ 235 (545)
+.++|+|||+.+.+. -.|+.....+...+.. |++.+-+||||.+..+.+ +..+.+.++..+..+.. ...+...
T Consensus 289 V~~lV~dEaD~lfe~-~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE--~~~~i~~~~~~vivg~~~sa~~~V~Qe 364 (593)
T KOG0344|consen 289 VEWLVVDEADLLFEP-EFFVEQLADIYSACQS-PDIRVALFSATISVYVEE--WAELIKSDLKRVIVGLRNSANETVDQE 364 (593)
T ss_pred eeeEeechHHhhhCh-hhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHH--HHHHhhccceeEEEecchhHhhhhhhh
Confidence 889999999999875 1255444444333333 788889999999998876 44444555554443322 2234444
Q ss_pred eecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHH-HhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEe
Q 009048 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (545)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L-~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (545)
..+......++-.+.+++...-..+++||+.+.+.|.+|...| .-.++.+..+||..++.+|...+++|+.|++.||||
T Consensus 365 lvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred heeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEe
Confidence 4555555677888888888777789999999999999999999 566899999999999999999999999999999999
Q ss_pred ccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHH
Q 009048 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (545)
Q Consensus 315 T~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~ 375 (545)
|+.+++|+|+.+|+.||+||.|.+..+|+||+||+||+|+.|.+++||+..|...++-+..
T Consensus 445 Tdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 445 TDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred hhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999888765543
No 49
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.5e-38 Score=354.73 Aligned_cols=331 Identities=22% Similarity=0.282 Sum_probs=238.3
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHHH
Q 009048 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALM 91 (545)
Q Consensus 17 ~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~-il~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL~ 91 (545)
++.+++++.+.+.|++ .|+..|+|+|.++++. +++|+|+++++|||||||++|.+|++. .++++|+|+|+++|+
T Consensus 3 ~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 3 VDELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred HHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 4566788999999998 7999999999999986 789999999999999999999999864 467899999999999
Q ss_pred HHHHHHHHH---cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 009048 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (545)
Q Consensus 92 ~qq~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (545)
.|++..++. +|+.+..+++....... . + ...+|+++|||.+.. +.. ........+++|||||+|
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~---~----~~~~IiV~Tpe~~~~--ll~--~~~~~l~~l~lvViDE~H 148 (720)
T PRK00254 82 EEKYREFKDWEKLGLRVAMTTGDYDSTDE--W---L----GKYDIIIATAEKFDS--LLR--HGSSWIKDVKLVVADEIH 148 (720)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCchh--h---h----ccCCEEEEcHHHHHH--HHh--CCchhhhcCCEEEEcCcC
Confidence 999988875 47777777665543211 1 1 136789999886532 111 011123458999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHh-CCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCc-----ceeee--eccc
Q 009048 169 CISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN-----LFYEV--RYKD 240 (545)
Q Consensus 169 ~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~n-----i~~~v--~~~~ 240 (545)
.+.+++ +.+.+..+ ... .++.++++||||++.. .++..+++... +. +..+|. +.+.. ...+
T Consensus 149 ~l~~~~--rg~~le~i---l~~l~~~~qiI~lSATl~n~--~~la~wl~~~~---~~-~~~rpv~l~~~~~~~~~~~~~~ 217 (720)
T PRK00254 149 LIGSYD--RGATLEMI---LTHMLGRAQILGLSATVGNA--EELAEWLNAEL---VV-SDWRPVKLRKGVFYQGFLFWED 217 (720)
T ss_pred ccCCcc--chHHHHHH---HHhcCcCCcEEEEEccCCCH--HHHHHHhCCcc---cc-CCCCCCcceeeEecCCeeeccC
Confidence 998765 34444433 333 3478999999999763 55666665431 11 111111 11100 0000
Q ss_pred c-----hhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC---------------------------------C
Q 009048 241 L-----LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------------------G 282 (545)
Q Consensus 241 ~-----~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~---------------------------------g 282 (545)
. .......+.+.++ .++++||||+|++.|+.++..|... .
T Consensus 218 ~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 295 (720)
T PRK00254 218 GKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALR 295 (720)
T ss_pred cchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHh
Confidence 0 0112233344444 3568999999999999888766421 2
Q ss_pred CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEE-------eCCCC-CHHHHHHHHhhccCCC-
Q 009048 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------FNIPK-SMEAFYQESGRAGRDQ- 353 (545)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~-------~~~p~-s~~~y~Qr~GRagR~g- 353 (545)
.++..|||+|++++|..+++.|++|.++|||||+++++|||+|.+++||+ ++.|. +..+|.||+|||||.|
T Consensus 296 ~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 296 GGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred hCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 35899999999999999999999999999999999999999999999994 45444 6789999999999976
Q ss_pred -CCCeEEEEeccccH-HHHHHHH
Q 009048 354 -LPSKSLLYYGMDDR-RRMEFIL 374 (545)
Q Consensus 354 -~~~~~i~~~~~~d~-~~~~~i~ 374 (545)
..|.++++....+. ..++.++
T Consensus 376 d~~G~~ii~~~~~~~~~~~~~~~ 398 (720)
T PRK00254 376 DEVGEAIIVATTEEPSKLMERYI 398 (720)
T ss_pred CCCceEEEEecCcchHHHHHHHH
Confidence 46889999876553 3344443
No 50
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=345.31 Aligned_cols=350 Identities=20% Similarity=0.332 Sum_probs=274.3
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----------CCCeE
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIV 81 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~-----------~~~~~ 81 (545)
+...|...++...+...+++ +||..++|+|.+||++++.|+|||.+|-||||||++|++|++. .++.+
T Consensus 363 pv~sW~q~gl~~~il~tlkk-l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~ 441 (997)
T KOG0334|consen 363 PVTSWTQCGLSSKILETLKK-LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIA 441 (997)
T ss_pred ccchHhhCCchHHHHHHHHH-hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceE
Confidence 44566677888999999965 8999999999999999999999999999999999999999983 26789
Q ss_pred EEEcChHHHHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccC
Q 009048 82 LVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (545)
Q Consensus 82 lVi~P~~aL~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~ 157 (545)
||++||++|+.|..+.++. .|+.+++..++....... ..+..+ ..|+++||-.+--.-..+ -.++.+..
T Consensus 442 li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qi---aelkRg---~eIvV~tpGRmiD~l~~n-~grvtnlr 514 (997)
T KOG0334|consen 442 LILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQI---AELKRG---AEIVVCTPGRMIDILCAN-SGRVTNLR 514 (997)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHH---HHHhcC---CceEEeccchhhhhHhhc-CCcccccc
Confidence 9999999999998888766 578888777776555443 333443 556666665332111000 01122233
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc---CCCCccee
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFY 234 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~ni~~ 234 (545)
.+.++|+||||++.+.| |.|..-.| +...-|..+.+++|||.+..+..--...+ ..|+.+... .--..+..
T Consensus 515 R~t~lv~deaDrmfdmg--fePq~~~I--i~nlrpdrQtvlfSatfpr~m~~la~~vl--~~Pveiiv~~~svV~k~V~q 588 (997)
T KOG0334|consen 515 RVTYLVLDEADRMFDMG--FEPQITRI--LQNLRPDRQTVLFSATFPRSMEALARKVL--KKPVEIIVGGRSVVCKEVTQ 588 (997)
T ss_pred ccceeeechhhhhheec--cCcccchH--HhhcchhhhhhhhhhhhhHHHHHHHHHhh--cCCeeEEEccceeEeccceE
Confidence 35599999999999888 77766553 33345688999999999988655333333 355543322 12234445
Q ss_pred eeecccchhhHHHHHHHHHHh-CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Q 009048 235 EVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (545)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~~-~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLV 313 (545)
.+.......+++..|.++|.. ....++||||...+.|..+.+.|.+.|++|..+||+.++.+|..+++.|++|.+.+||
T Consensus 589 ~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLv 668 (997)
T KOG0334|consen 589 VVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLV 668 (997)
T ss_pred EEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEE
Confidence 555555457888888888865 3467899999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHh
Q 009048 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (545)
Q Consensus 314 aT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~ 376 (545)
||+.+++|+|++++.+||||++|...+.|+||.||+||.|..|.|++|..+.+......|.+.
T Consensus 669 aTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~a 731 (997)
T KOG0334|consen 669 ATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKA 731 (997)
T ss_pred ehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999766555444443
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.8e-37 Score=343.61 Aligned_cols=334 Identities=20% Similarity=0.203 Sum_probs=232.7
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHH
Q 009048 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMEN 93 (545)
Q Consensus 17 ~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~q 93 (545)
++++++++.+.+.+.. .|+. ++++|.++++.+.+|++++++||||||||+++.++++. .++++|+++|+++|+.|
T Consensus 3 ~~~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q 80 (674)
T PRK01172 3 ISDLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAME 80 (674)
T ss_pred HhhcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHH
Confidence 4556778899999976 5887 99999999999999999999999999999999888764 47889999999999999
Q ss_pred HHHHHHH---cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccc
Q 009048 94 QVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (545)
Q Consensus 94 q~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (545)
+++.+++ .|+.+....+....... . + ...+++++|||.+..--. ........+++|||||||++
T Consensus 81 ~~~~~~~l~~~g~~v~~~~G~~~~~~~--~---~----~~~dIiv~Tpek~~~l~~----~~~~~l~~v~lvViDEaH~l 147 (674)
T PRK01172 81 KYEELSRLRSLGMRVKISIGDYDDPPD--F---I----KRYDVVILTSEKADSLIH----HDPYIINDVGLIVADEIHII 147 (674)
T ss_pred HHHHHHHHhhcCCeEEEEeCCCCCChh--h---h----ccCCEEEECHHHHHHHHh----CChhHHhhcCEEEEecchhc
Confidence 9998875 46666555544322111 0 1 136788888886432110 01112345899999999999
Q ss_pred cccCCCCHHHHHHHH-HHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeec-----cc----
Q 009048 171 SSWGHDFRPSYRKLS-SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-----KD---- 240 (545)
Q Consensus 171 ~~~g~~fr~~~~~l~-~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~-----~~---- 240 (545)
.+.+ +.+.+..+. .++...++.++++||||++.. .++..+++... +...+....+...+.. .+
T Consensus 148 ~d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~---~~~~~r~vpl~~~i~~~~~~~~~~~~~ 220 (674)
T PRK01172 148 GDED--RGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASL---IKSNFRPVPLKLGILYRKRLILDGYER 220 (674)
T ss_pred cCCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCc---cCCCCCCCCeEEEEEecCeeeeccccc
Confidence 7644 444455443 333344688999999999753 45666665321 1111111111111100 00
Q ss_pred chhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCC-------------------------CcEEEecCCCCHH
Q 009048 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-------------------------ISCAAYHAGLNDK 295 (545)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g-------------------------~~~~~~h~~l~~~ 295 (545)
........+.+.+ ..++++||||++++.|+.++..|.+.. .++..+||+|+++
T Consensus 221 ~~~~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~ 298 (674)
T PRK01172 221 SQVDINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNE 298 (674)
T ss_pred ccccHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHH
Confidence 0001112222222 235689999999999999999886531 2478899999999
Q ss_pred HHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCC---------CCCHHHHHHHHhhccCCCC--CCeEEEEecc
Q 009048 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---------PKSMEAFYQESGRAGRDQL--PSKSLLYYGM 364 (545)
Q Consensus 296 ~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~---------p~s~~~y~Qr~GRagR~g~--~~~~i~~~~~ 364 (545)
+|..+++.|++|.++|||||+++++|||+|+.++|| .+. |.|..+|.||+|||||.|. .|.++++...
T Consensus 299 eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~ 377 (674)
T PRK01172 299 QRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAAS 377 (674)
T ss_pred HHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecC
Confidence 999999999999999999999999999999865554 443 5689999999999999985 5667777654
Q ss_pred cc-HHHHHHHHH
Q 009048 365 DD-RRRMEFILS 375 (545)
Q Consensus 365 ~d-~~~~~~i~~ 375 (545)
.+ ...++.++.
T Consensus 378 ~~~~~~~~~~l~ 389 (674)
T PRK01172 378 PASYDAAKKYLS 389 (674)
T ss_pred cccHHHHHHHHc
Confidence 43 555666554
No 52
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-38 Score=306.38 Aligned_cols=342 Identities=21% Similarity=0.325 Sum_probs=267.9
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcCh
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~ 87 (545)
.+.|..+.+.++|++.+.. +||+.|+.+|+.||..+.+|.|+++.+++|+|||.+|.+++++. ...++++.|+
T Consensus 25 vdsfddm~L~e~LLrgiy~-yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPt 103 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYA-YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPT 103 (397)
T ss_pred hhhhhhcCCCHHHHhHHHh-hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcch
Confidence 5678899999999999997 89999999999999999999999999999999999999999975 4569999999
Q ss_pred HHHHHHHHHHHHHcCC----ceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh--hhccCCccE
Q 009048 88 IALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (545)
Q Consensus 88 ~aL~~qq~~~l~~~gi----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~~~l~~ 161 (545)
++|+.|.......+|- .+....++........ .+.... ..+ .+.||++...+.+ ......+.+
T Consensus 104 reLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~---~i~~~~--~hi------vvGTpgrV~dml~~~~l~~~~iKm 172 (397)
T KOG0327|consen 104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQ---ALLKDK--PHI------VVGTPGRVFDMLNRGSLSTDGIKM 172 (397)
T ss_pred HHHHHHHHHHHHhhhcccceeeeeecCcccchhhhh---hhhccC--cee------ecCCchhHHHhhccccccccceeE
Confidence 9999998877777543 3332222222221111 111111 233 4555665544432 222344899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcce---eeee
Q 009048 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF---YEVR 237 (545)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~---~~v~ 237 (545)
+|+|||+.+...| |+..+..+ .+.. ++++++++|||.++.+.. ...-.+.+|..+....+...+. ..+.
T Consensus 173 fvlDEaDEmLs~g--fkdqI~~i---f~~lp~~vQv~l~SAT~p~~vl~--vt~~f~~~pv~i~vkk~~ltl~gikq~~i 245 (397)
T KOG0327|consen 173 FVLDEADEMLSRG--FKDQIYDI---FQELPSDVQVVLLSATMPSDVLE--VTKKFMREPVRILVKKDELTLEGIKQFYI 245 (397)
T ss_pred EeecchHhhhccc--hHHHHHHH---HHHcCcchhheeecccCcHHHHH--HHHHhccCceEEEecchhhhhhheeeeee
Confidence 9999999999977 77655555 4444 489999999999999877 4444567777654433222221 1111
Q ss_pred cccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc
Q 009048 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (545)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (545)
.... ++++..|.++.+ .-...+|||||++.+..+...|..+|+.+..+|+.|.+.+|..++..|+.|+.+|||+|+.
T Consensus 246 ~v~k-~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl 322 (397)
T KOG0327|consen 246 NVEK-EEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDL 322 (397)
T ss_pred eccc-cccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccc
Confidence 1111 237777887777 3456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhc
Q 009048 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (545)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~ 377 (545)
+++|+|+.++..||+|++|...++|+||+||+||-|.+|.++.++...|...++.+.+.-
T Consensus 323 ~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y 382 (397)
T KOG0327|consen 323 LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFY 382 (397)
T ss_pred cccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhc
Confidence 999999999999999999999999999999999999999999999999999888877543
No 53
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.8e-37 Score=316.30 Aligned_cols=341 Identities=19% Similarity=0.259 Sum_probs=269.6
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcC
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P 86 (545)
.+..|+.+.+-.++...|++ -||..++++|..||+.++.+-|+||++..|+|||++|-+.++.. ....+||+|
T Consensus 23 ~~~~fe~l~l~r~vl~glrr-n~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~P 101 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRR-NAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTP 101 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHh-hcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEec
Confidence 35567778888889999987 49999999999999999999999999999999999998777643 467999999
Q ss_pred hHHHHHHHHHHHHHcC-----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH--hhhccCCc
Q 009048 87 LIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLL 159 (545)
Q Consensus 87 ~~aL~~qq~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~--~~~~~~~l 159 (545)
||+|+-|..+.+.+.+ ..+..+.++........- +. ..+|+++ |||++..|- ...+.+.+
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~r---lk----~~rIvIG------tPGRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIR---LK----QTRIVIG------TPGRIAQLVELGAMNMSHV 168 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhh---hh----hceEEec------CchHHHHHHHhcCCCccce
Confidence 9999999888888754 455555555544332211 11 2456555 455555553 34456679
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcce----e
Q 009048 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF----Y 234 (545)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~----~ 234 (545)
+++|+||||.+.+-+. |+.. +..+...+| ..+++++|||-+......+.+. |++|..++.+...+.++ |
T Consensus 169 rlfVLDEADkL~~t~s-fq~~---In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~--mrdp~lVr~n~~d~~L~GikQy 242 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTES-FQDD---INIIINSLPQIRQVAAFSATYPRNLDNLLSKF--MRDPALVRFNADDVQLFGIKQY 242 (980)
T ss_pred eEEEeccHHhhhchhh-HHHH---HHHHHHhcchhheeeEEeccCchhHHHHHHHH--hcccceeecccCCceeechhhe
Confidence 9999999999998553 6644 445566666 6789999999988876655554 47788777666555442 1
Q ss_pred eeeccc------chhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC
Q 009048 235 EVRYKD------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (545)
Q Consensus 235 ~v~~~~------~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (545)
.+.... ....+++.|.++++..+-...||||+....|+.++..|...|+.|..+.|.|++.+|..+++.++.-.
T Consensus 243 v~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~ 322 (980)
T KOG4284|consen 243 VVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFR 322 (980)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhce
Confidence 111111 12346777888888888888999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccH-HHHHHH
Q 009048 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFI 373 (545)
Q Consensus 309 ~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~-~~~~~i 373 (545)
++|||+|+..++|||-++|.+||+.|.|.+.++|+||||||||.|..|.+++|+..... +.+..+
T Consensus 323 ~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 323 VRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred EEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999865543 443333
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.4e-36 Score=348.12 Aligned_cols=291 Identities=23% Similarity=0.272 Sum_probs=209.9
Q ss_pred EEcCCCchHHHHHHHHHhcC----------------CCeEEEEcChHHHHHHHHHHHHH----------------cCCce
Q 009048 58 CLMPTGGGKSMCYQIPALAK----------------PGIVLVVSPLIALMENQVIGLKE----------------KGIAG 105 (545)
Q Consensus 58 v~apTGsGKTl~~~lp~l~~----------------~~~~lVi~P~~aL~~qq~~~l~~----------------~gi~~ 105 (545)
|++|||||||+||.+|++.+ +..+|||+|+++|+.|+.+.|+. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999998732 24799999999999999998863 35677
Q ss_pred eEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc--cCCCCHHHHHH
Q 009048 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRK 183 (545)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~--~g~~fr~~~~~ 183 (545)
...++......+..... . ..+|+++|||.+... +.. .....+..+++|||||+|.+.. +|..+...+.+
T Consensus 81 ~vrtGDt~~~eR~rll~----~--ppdILVTTPEsL~~L--Lts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeR 151 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTR----N--PPDILITTPESLYLM--LTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLER 151 (1490)
T ss_pred EEEECCCCHHHHHHHhc----C--CCCEEEecHHHHHHH--Hhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHH
Confidence 77787777766644322 1 368999999966321 000 0112345699999999999975 67767666666
Q ss_pred HHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC-CC-cceeeeecccch------------------h
Q 009048 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RP-NLFYEVRYKDLL------------------D 243 (545)
Q Consensus 184 l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~-r~-ni~~~v~~~~~~------------------~ 243 (545)
|..+.. .+.++|+||||+.+. +++.++|+...+..+..... ++ .+.+.+...+.. .
T Consensus 152 L~~l~~--~~~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~ 227 (1490)
T PRK09751 152 LDALLH--TSAQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREG 227 (1490)
T ss_pred HHHhCC--CCCeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhh
Confidence 554422 367899999999874 56778887665654432222 21 222211111100 0
Q ss_pred ----hHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCC---------------------------------CcEE
Q 009048 244 ----DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---------------------------------ISCA 286 (545)
Q Consensus 244 ----~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g---------------------------------~~~~ 286 (545)
.....+...+. .+.++||||||++.|+.++..|++.. ..+.
T Consensus 228 ~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 305 (1490)
T PRK09751 228 SIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIAR 305 (1490)
T ss_pred hhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeee
Confidence 00112222222 34679999999999999999997631 1257
Q ss_pred EecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCC-CCCCeEEEEec
Q 009048 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYYG 363 (545)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~-g~~~~~i~~~~ 363 (545)
.|||+|+.++|..+++.|++|++++||||+++++|||+++|++||+++.|.|+.+|+||+||+||. |..+.++++..
T Consensus 306 ~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 306 SHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred eccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999996 44556664443
No 55
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2e-35 Score=323.70 Aligned_cols=317 Identities=16% Similarity=0.143 Sum_probs=215.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcChHHHHHHHHHH
Q 009048 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALMENQVIG 97 (545)
Q Consensus 25 ~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~-d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~aL~~qq~~~ 97 (545)
.+.+.+++..||+ |+|+|.++|+.++.|+ ++++.+|||||||.++.++.+.. ....++++|+++|+.|..+.
T Consensus 3 ~f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 3 KFDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHH
Confidence 4556677777998 9999999999999998 57788999999999655433321 23455577999999999988
Q ss_pred HHHcC---------------------------CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHH--
Q 009048 98 LKEKG---------------------------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-- 148 (545)
Q Consensus 98 l~~~g---------------------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~-- 148 (545)
+.+++ +.+..+.++...... +..+. ....|+++|++++.+..+..
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q---~~~l~---~~p~IIVgT~D~i~sr~L~~gY 155 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDE---WMLDP---HRPAVIVGTVDMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHH---HHhcC---CCCcEEEECHHHHcCCcccccc
Confidence 87643 444555666554332 12222 23689999988776533210
Q ss_pred ----HHH--hhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CcCEEEEEcCCChhhHHHHHHHhcCCC
Q 009048 149 ----KLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQN 219 (545)
Q Consensus 149 ----~l~--~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~~~~l~lTAT~~~~~~~~i~~~l~~~~ 219 (545)
.+. +....+.+.+||+|||| .+.| |......|.......+ +.++++||||++..+... ...+ +.+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l-~~~~-~~~ 229 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDR-TTLL-SAE 229 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHH-HHHH-ccC
Confidence 000 11124568899999999 3445 8877777655422222 268999999998876543 2222 223
Q ss_pred CeEEeccCC---CCcceeeeecccchhhHH----HHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCC
Q 009048 220 PLVLKSSFN---RPNLFYEVRYKDLLDDAY----ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (545)
Q Consensus 220 ~~~~~~~~~---r~ni~~~v~~~~~~~~~~----~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l 292 (545)
+..+..... ..++.. +.... ...++ ..+..++. ..++++||||||++.|+.+++.|.+.++ ..+||+|
T Consensus 230 p~~i~V~~~~l~a~ki~q-~v~v~-~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m 304 (844)
T TIGR02621 230 DYKHPVLKKRLAAKKIVK-LVPPS-DEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTL 304 (844)
T ss_pred CceeecccccccccceEE-EEecC-hHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCC
Confidence 332222111 111111 11111 12222 22333333 3456899999999999999999999887 8999999
Q ss_pred CHHHHH-----HHHHHHHc----CC-------CcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCC
Q 009048 293 NDKARS-----SVLDDWIS----SR-------KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (545)
Q Consensus 293 ~~~~R~-----~~~~~f~~----g~-------~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~ 356 (545)
++.+|. .++++|++ |+ ..|||||+++++|||++. ++||++..| .+.|+||+||+||.|+.+
T Consensus 305 ~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 305 RGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQ 381 (844)
T ss_pred CHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCC
Confidence 999999 88999987 44 689999999999999986 888887766 799999999999999854
Q ss_pred eE-EEEe
Q 009048 357 KS-LLYY 362 (545)
Q Consensus 357 ~~-i~~~ 362 (545)
.+ +.++
T Consensus 382 ~~~i~vv 388 (844)
T TIGR02621 382 ACQIAVV 388 (844)
T ss_pred CceEEEE
Confidence 33 4444
No 56
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3e-35 Score=338.18 Aligned_cols=304 Identities=19% Similarity=0.259 Sum_probs=219.2
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCCCeEEEEcChHHHHHHHHHHHHH
Q 009048 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l---~~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
+++.+.+++.+|+ .|+++|..+++.++.|+|++++||||+|||..++++++ ..+..++||+||++|+.|+.+.++.
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~ 145 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEK 145 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH
Confidence 4556677788898 69999999999999999999999999999975443332 2367899999999999999999998
Q ss_pred cCC----ceeEecccc--cHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC
Q 009048 101 KGI----AGEFLSSTQ--TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (545)
Q Consensus 101 ~gi----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (545)
++. ....+.++. ....+......+..+. .+|+++||+.+. ..........+++|||||||++..|+
T Consensus 146 l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~--~~IlV~Tp~rL~------~~~~~l~~~~~~~lVvDEaD~~L~~~ 217 (1176)
T PRK09401 146 FGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGD--FDILVTTSQFLS------KNFDELPKKKFDFVFVDDVDAVLKSS 217 (1176)
T ss_pred HhhhcCceEEEEEccCCcchhHHHHHHHHHhcCC--CCEEEECHHHHH------HHHHhccccccCEEEEEChHHhhhcc
Confidence 643 333333332 2334444444555443 678777776543 22222334459999999999999876
Q ss_pred CC---------CH------------------HHHHHHHHHHHhCC-----CcCEEEEEcCCChhhHH-HHHHHhcCCCCe
Q 009048 175 HD---------FR------------------PSYRKLSSLRNYLP-----DVPILALTATAAPKVQK-DVMESLCLQNPL 221 (545)
Q Consensus 175 ~~---------fr------------------~~~~~l~~l~~~~~-----~~~~l~lTAT~~~~~~~-~i~~~l~~~~~~ 221 (545)
++ |. +.|.++..+..... ..+++++|||+++.... .+.. ++.
T Consensus 218 k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~-----~ll 292 (1176)
T PRK09401 218 KNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFR-----ELL 292 (1176)
T ss_pred cchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhh-----ccc
Confidence 43 42 33444444444332 57899999999886332 2222 221
Q ss_pred EEec---cCCCCcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhh---HHHHHHHHHhCCCcEEEecCCCCHH
Q 009048 222 VLKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLNDK 295 (545)
Q Consensus 222 ~~~~---~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~---~~~l~~~L~~~g~~~~~~h~~l~~~ 295 (545)
.+.. .....|+...+.... ++...+..+++..+ ..+||||++++. ++.+++.|...|+++..+||+|
T Consensus 293 ~~~v~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l--- 365 (1176)
T PRK09401 293 GFEVGSPVFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF--- 365 (1176)
T ss_pred eEEecCcccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH---
Confidence 1211 122334433333222 45566777776654 469999999888 9999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEe----ccccccccccCC-CcEEEEeCCCC------CHHHHHHHHhhcc
Q 009048 296 ARSSVLDDWISSRKQVVVA----TVAFGMGIDRKD-VRLVCHFNIPK------SMEAFYQESGRAG 350 (545)
Q Consensus 296 ~R~~~~~~f~~g~~~VLVa----T~a~~~GiD~p~-v~~VI~~~~p~------s~~~y~Qr~GRag 350 (545)
+ ..+++|++|+++|||| |++++||||+|+ |++||||++|+ ..+.|.+++||+.
T Consensus 366 -~-~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 366 -E-RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred -H-HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 2 2359999999999999 689999999999 89999999999 6788999999995
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.8e-35 Score=306.88 Aligned_cols=302 Identities=17% Similarity=0.108 Sum_probs=192.6
Q ss_pred CEEEEcCCCchHHHHHHHHHhc-----CCCeEEEEcChHHHHHHHHHHHHHc-CCceeEecccccHHH---------HHH
Q 009048 55 DCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEK-GIAGEFLSSTQTMQV---------KTK 119 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~l~-----~~~~~lVi~P~~aL~~qq~~~l~~~-gi~~~~~~~~~~~~~---------~~~ 119 (545)
|+++.||||||||++|++|++. ..+++++++|+++|+.|+.+.++.. |.....+++...... ...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 6899999999999999999883 3578999999999999999999985 655554444332110 001
Q ss_pred HHHhhhcC---CCCccEEEECcccccChhhH---HHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCC
Q 009048 120 IYEDLDSG---KPSLRLLYVTPELTATPGFM---SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193 (545)
Q Consensus 120 ~~~~~~~~---~~~~~il~~tpe~~~t~~~~---~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~ 193 (545)
........ .....++++||+.+...-+. ......... ..++|||||||++.+++..+ +..+..... ..+
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~-~~~~iViDE~h~~~~~~~~~---l~~~l~~l~-~~~ 155 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASI-ANSLLIFDEVHFYDEYTLAL---ILAVLEVLK-DND 155 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHh-cCCEEEEeCCCCCCHHHHHH---HHHHHHHHH-HcC
Confidence 11111111 01245667777754321111 001111111 13789999999999865322 333322222 247
Q ss_pred cCEEEEEcCCChhhHHHHHHHhcCC-CCeEEeccCCCCcceeeeec-ccchhhHHHHHHHHHHh-CCCccEEEEecchhh
Q 009048 194 VPILALTATAAPKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVRY-KDLLDDAYADLCSVLKA-NGDTCAIVYCLERTT 270 (545)
Q Consensus 194 ~~~l~lTAT~~~~~~~~i~~~l~~~-~~~~~~~~~~r~ni~~~v~~-~~~~~~~~~~l~~~l~~-~~~~~~IIf~~t~~~ 270 (545)
.|++++|||++.... ++....... .+..+.....+....+.+.. ......+...+..+++. ..++++||||+|++.
T Consensus 156 ~~~i~~SATlp~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 156 VPILLMSATLPKFLK-EYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCEEEEecCchHHHH-HHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 899999999986543 333322221 11111100000000111100 11111223333333332 235689999999999
Q ss_pred HHHHHHHHHhCCC--cEEEecCCCCHHHHHH----HHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHH
Q 009048 271 CDELSAYLSAGGI--SCAAYHAGLNDKARSS----VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ 344 (545)
Q Consensus 271 ~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~----~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q 344 (545)
|+.++..|.+.+. .+..+||++++.+|.. +++.|++|+..|||||+++++|||++ +++||++..| ++.|+|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iq 311 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQ 311 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHH
Confidence 9999999988766 4999999999999976 48899999999999999999999995 8899988766 889999
Q ss_pred HHhhccCCCCCC----eEEEEeccc
Q 009048 345 ESGRAGRDQLPS----KSLLYYGMD 365 (545)
Q Consensus 345 r~GRagR~g~~~----~~i~~~~~~ 365 (545)
|+||+||.|+.. ..++|+...
T Consensus 312 r~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 312 RLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HhccccCCCCCCCCCCeEEEEeecC
Confidence 999999998643 566665543
No 58
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.3e-34 Score=298.68 Aligned_cols=297 Identities=18% Similarity=0.186 Sum_probs=200.4
Q ss_pred HHHHHHHHHHcCCC--EEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHc--------CCceeEeccc
Q 009048 42 KQLDAIQAVLSGRD--CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK--------GIAGEFLSST 111 (545)
Q Consensus 42 ~Q~~~i~~il~g~d--~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~--------gi~~~~~~~~ 111 (545)
+|.++++++.++++ +++.||||+|||+||++|++.....+++++|+++|++||.+.++++ +..+..+.+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 59999999998874 7889999999999999999988888999999999999999998874 2233333332
Q ss_pred ccHHHHHHHH---HhhhcC------------CCCccEEEECcccccChhhHHHHHh------hhccCCccEEEEeccccc
Q 009048 112 QTMQVKTKIY---EDLDSG------------KPSLRLLYVTPELTATPGFMSKLKK------IHSRGLLNLVAIDEAHCI 170 (545)
Q Consensus 112 ~~~~~~~~~~---~~~~~~------------~~~~~il~~tpe~~~t~~~~~~l~~------~~~~~~l~~iViDEaH~i 170 (545)
+........ .+...+ .....+++++|+++..- ...... ......+++|||||+|.+
T Consensus 81 -~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~l--lr~~~~~~~~~~~~~~~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 81 -TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYL--TRFAYIDRGDIAAGFYTKFSTVIFDEFHLY 157 (357)
T ss_pred -chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHH--HhhhccCcccchhhhhcCCCEEEEeccccc
Confidence 222111111 000010 11234555556655321 000000 001245899999999999
Q ss_pred cccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccC------------C------C--
Q 009048 171 SSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------------N------R-- 229 (545)
Q Consensus 171 ~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~------------~------r-- 229 (545)
+.|+.++...+.....+.... ...+++++|||+++.+...+...+.+..+.....+. . +
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 237 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPV 237 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccccee
Confidence 988877666554444443332 257999999999998877766553344443332222 0 1
Q ss_pred -Ccceeeeeccc-chhhHHHHHH----HHHHhCCCccEEEEecchhhHHHHHHHHHhCC--CcEEEecCCCCHHHHHHHH
Q 009048 230 -PNLFYEVRYKD-LLDDAYADLC----SVLKANGDTCAIVYCLERTTCDELSAYLSAGG--ISCAAYHAGLNDKARSSVL 301 (545)
Q Consensus 230 -~ni~~~v~~~~-~~~~~~~~l~----~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g--~~~~~~h~~l~~~~R~~~~ 301 (545)
|.+...+.... .....+..+. +.++...++++||||+|++.++.++..|++.| +.+..+||.+++.+|...
T Consensus 238 ~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~- 316 (357)
T TIGR03158 238 LPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA- 316 (357)
T ss_pred ccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh-
Confidence 23444333321 1112222222 33333456789999999999999999999864 578899999999988654
Q ss_pred HHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhcc
Q 009048 302 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350 (545)
Q Consensus 302 ~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRag 350 (545)
++.+|||||+++++|||+|.+ +|| ++ |.+.+.|+||+||+|
T Consensus 317 -----~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 -----MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -----ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 478999999999999999987 666 45 899999999999997
No 59
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-36 Score=295.97 Aligned_cols=341 Identities=19% Similarity=0.241 Sum_probs=270.7
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-------CCeEEEEcC
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSP 86 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-------~~~~lVi~P 86 (545)
+-.|..++++..+.+++.+. ||..++|+|++.|+.+++++|+...+-||||||.||++|++++ +-++++++|
T Consensus 20 ~g~fqsmgL~~~v~raI~kk-g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsp 98 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKK-GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSP 98 (529)
T ss_pred CCCccccCCCHHHHHHHHHh-hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccC
Confidence 45688899999999999874 9999999999999999999999999999999999999999863 348999999
Q ss_pred hHHHHHHHHHHHHHcCCc----eeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEE
Q 009048 87 LIALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (545)
Q Consensus 87 ~~aL~~qq~~~l~~~gi~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~i 162 (545)
+++|+.|...-++.+|-. ..++.++....+. +..+. . +.+++++||-.+...+. .-...+..+.+|
T Consensus 99 treLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeq---f~~l~-~--npDii~ATpgr~~h~~v----em~l~l~sveyV 168 (529)
T KOG0337|consen 99 TRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQ---FILLN-E--NPDIIIATPGRLLHLGV----EMTLTLSSVEYV 168 (529)
T ss_pred cHHHHHHHHHHHHHhccccchhhhhhcccchHHHH---HHHhc-c--CCCEEEecCceeeeeeh----heeccccceeee
Confidence 999999999998887542 2323333222222 22222 1 25666666665543221 111234558899
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC---CCcceeeeec
Q 009048 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRY 238 (545)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~ni~~~v~~ 238 (545)
|+|||+.+.++| |. .++.++....| +.+.++||||++..... +..-|+.+|..++.... .+.+......
T Consensus 169 VfdEadrlfemg--fq---eql~e~l~rl~~~~QTllfSatlp~~lv~--fakaGl~~p~lVRldvetkise~lk~~f~~ 241 (529)
T KOG0337|consen 169 VFDEADRLFEMG--FQ---EQLHEILSRLPESRQTLLFSATLPRDLVD--FAKAGLVPPVLVRLDVETKISELLKVRFFR 241 (529)
T ss_pred eehhhhHHHhhh--hH---HHHHHHHHhCCCcceEEEEeccCchhhHH--HHHccCCCCceEEeehhhhcchhhhhheee
Confidence 999999999988 43 56677777777 67999999999998777 77788899988773322 1112111111
Q ss_pred ccchhhHHHHHHHHHHhCC-CccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc
Q 009048 239 KDLLDDAYADLCSVLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (545)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~-~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (545)
...+++...|..++.... ..+++|||.|+.+++.+...|...|+.+..++|.|++..|..-...|..++..++|.|+.
T Consensus 242 -~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdv 320 (529)
T KOG0337|consen 242 -VRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDV 320 (529)
T ss_pred -eccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehh
Confidence 122567777887776543 357999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHH
Q 009048 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (545)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i 373 (545)
+.+|+|+|-.+.||+|+.|.+..-|+||+||+.|+|..|.++.++.+.|...+-.+
T Consensus 321 aaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 321 AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred hhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhh
Confidence 99999999999999999999999999999999999999999999998887655444
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1e-34 Score=294.66 Aligned_cols=332 Identities=23% Similarity=0.315 Sum_probs=245.9
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHH---hcC-CCeEEEEcChHHHHH
Q 009048 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPA---LAK-PGIVLVVSPLIALME 92 (545)
Q Consensus 18 ~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~-il~g~d~lv~apTGsGKTl~~~lp~---l~~-~~~~lVi~P~~aL~~ 92 (545)
..++.++++...|+. -|+..+.|.|..++++ +++|.|.+|+.+|+||||++.-++- +.. +++.|+++|+.||++
T Consensus 197 deLdipe~fk~~lk~-~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALAN 275 (830)
T COG1202 197 DELDIPEKFKRMLKR-EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALAN 275 (830)
T ss_pred cccCCcHHHHHHHHh-cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhc
Confidence 347788999999987 6999999999999988 5699999999999999999877543 334 789999999999999
Q ss_pred HHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 009048 93 NQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (545)
Q Consensus 93 qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (545)
|..+.++. +|+....-.+..-.+..... --....++.+|+++|.|-+-- .+..-...+.++.+||||+|
T Consensus 276 QKy~dF~~rYs~LglkvairVG~srIk~~~~p--v~~~t~~dADIIVGTYEGiD~-----lLRtg~~lgdiGtVVIDEiH 348 (830)
T COG1202 276 QKYEDFKERYSKLGLKVAIRVGMSRIKTREEP--VVVDTSPDADIIVGTYEGIDY-----LLRTGKDLGDIGTVVIDEIH 348 (830)
T ss_pred chHHHHHHHhhcccceEEEEechhhhcccCCc--cccCCCCCCcEEEeechhHHH-----HHHcCCcccccceEEeeeee
Confidence 99999886 46555433322211111110 012234568999999884421 12222456779999999999
Q ss_pred cccc--cCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHH
Q 009048 169 CISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAY 246 (545)
Q Consensus 169 ~i~~--~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~ 246 (545)
.+.+ .|+..- --+++++..+|+.|++.||||..+. ..+...|+++-. .+. -..-.+..++.......++.
T Consensus 349 tL~deERG~RLd---GLI~RLr~l~~~AQ~i~LSATVgNp--~elA~~l~a~lV-~y~--~RPVplErHlvf~~~e~eK~ 420 (830)
T COG1202 349 TLEDEERGPRLD---GLIGRLRYLFPGAQFIYLSATVGNP--EELAKKLGAKLV-LYD--ERPVPLERHLVFARNESEKW 420 (830)
T ss_pred eccchhcccchh---hHHHHHHHhCCCCeEEEEEeecCCh--HHHHHHhCCeeE-eec--CCCCChhHeeeeecCchHHH
Confidence 9976 565322 3477888899999999999999776 355777765422 211 11112344444444445566
Q ss_pred HHHHHHHHh--------CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc
Q 009048 247 ADLCSVLKA--------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (545)
Q Consensus 247 ~~l~~~l~~--------~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (545)
..+..+.+. .-.+++|||++|++.|+.+|..|..+|+++.+||+||+..+|..+...|.++++.++|+|-|+
T Consensus 421 ~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL 500 (830)
T COG1202 421 DIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAAL 500 (830)
T ss_pred HHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhh
Confidence 666555532 124679999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcEEE---EeCCCC-CHHHHHHHHhhccCCCC--CCeEEEEeccc
Q 009048 319 GMGIDRKDVRLVC---HFNIPK-SMEAFYQESGRAGRDQL--PSKSLLYYGMD 365 (545)
Q Consensus 319 ~~GiD~p~v~~VI---~~~~p~-s~~~y~Qr~GRagR~g~--~~~~i~~~~~~ 365 (545)
+.|||+|.-.+|+ -++.-+ |+.+|.|+.|||||.+- .|.+++++.+.
T Consensus 501 ~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 501 AAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999544332 122222 89999999999999875 56777776654
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.6e-34 Score=307.37 Aligned_cols=298 Identities=16% Similarity=0.118 Sum_probs=206.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH---hcCC-CeEEEEcChHHHHHHHHHHHHHcCCc----eeEe
Q 009048 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAKP-GIVLVVSPLIALMENQVIGLKEKGIA----GEFL 108 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~---l~~~-~~~lVi~P~~aL~~qq~~~l~~~gi~----~~~~ 108 (545)
-.||++|.++++.++.+++.++++|||+|||+++...+ +... +++|||+|+++|+.|+.+.+++++.. ...+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 47999999999999999999999999999998765432 2333 48999999999999999999986531 1122
Q ss_pred cccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009048 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (545)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (545)
.++... ..+..|+++||+.+.... . .....+++|||||||++.. ..+..+.
T Consensus 193 ~~g~~~-------------~~~~~I~VaT~qsl~~~~-----~--~~~~~~~~iIvDEaH~~~~---------~~~~~il 243 (501)
T PHA02558 193 YSGTAK-------------DTDAPIVVSTWQSAVKQP-----K--EWFDQFGMVIVDECHLFTG---------KSLTSII 243 (501)
T ss_pred ecCccc-------------CCCCCEEEeeHHHHhhch-----h--hhccccCEEEEEchhcccc---------hhHHHHH
Confidence 222110 123578888887664321 0 1234589999999999875 2233444
Q ss_pred HhCC-CcCEEEEEcCCChhhHHH--HHHHhcCCCCeEEeccC----CCC---cceee---eecc----------------
Q 009048 189 NYLP-DVPILALTATAAPKVQKD--VMESLCLQNPLVLKSSF----NRP---NLFYE---VRYK---------------- 239 (545)
Q Consensus 189 ~~~~-~~~~l~lTAT~~~~~~~~--i~~~l~~~~~~~~~~~~----~r~---ni~~~---v~~~---------------- 239 (545)
..++ ..++++||||+....... +...+| +.....+. ... ...+. ....
T Consensus 244 ~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG---~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 320 (501)
T PHA02558 244 TKLDNCKFKFGLTGSLRDGKANILQYVGLFG---DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEI 320 (501)
T ss_pred HhhhccceEEEEeccCCCccccHHHHHHhhC---CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHH
Confidence 5554 456899999996543211 111111 11111000 000 00000 0000
Q ss_pred ---cchhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEe
Q 009048 240 ---DLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (545)
Q Consensus 240 ---~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (545)
.....+...+...+.. ..+.+++|||.++++++.+++.|.+.|.++..+||+++.++|..+++.|++|+..||||
T Consensus 321 ~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLva 400 (501)
T PHA02558 321 KYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVA 400 (501)
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 0001111222222221 23457899999999999999999999999999999999999999999999999999999
Q ss_pred c-cccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEecccc
Q 009048 315 T-VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (545)
Q Consensus 315 T-~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d 366 (545)
| +.+++|+|+|++++||++.+|+|...|+||+||++|.+..+...++|+.-|
T Consensus 401 T~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 401 SYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred EcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 8 899999999999999999999999999999999999987666666665544
No 62
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.4e-33 Score=307.58 Aligned_cols=297 Identities=19% Similarity=0.245 Sum_probs=203.4
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchHHHH---------HHHHHhc---------CCCeEEEEcChHHHHHHHHHHHHH-c-
Q 009048 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMC---------YQIPALA---------KPGIVLVVSPLIALMENQVIGLKE-K- 101 (545)
Q Consensus 42 ~Q~~~i~~il~g~d~lv~apTGsGKTl~---------~~lp~l~---------~~~~~lVi~P~~aL~~qq~~~l~~-~- 101 (545)
.|.++++.+++|++++++|+||+|||.+ |++|.+. ..+.++|++|+++|+.|....+.+ .
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 7889999999999999999999999986 3333332 235899999999999998888765 2
Q ss_pred -----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCC
Q 009048 102 -----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (545)
Q Consensus 102 -----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~ 176 (545)
|.++....++..... ... ... ...++++|+.+. . .....+++|||||||.++..+.
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~----~~t-~~k--~~~Ilv~T~~L~-l----------~~L~~v~~VVIDEaHEr~~~~D- 308 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDEL----INT-NPK--PYGLVFSTHKLT-L----------NKLFDYGTVIIDEVHEHDQIGD- 308 (675)
T ss_pred ccccCCceEEEEECCcchHH----hhc-ccC--CCCEEEEeCccc-c----------cccccCCEEEccccccCccchh-
Confidence 233344444443110 000 101 246777775421 1 1234589999999999987662
Q ss_pred CHHHHHHHHHHHHhCCC-cCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC-CCcceeeeeccc--------chhhHH
Q 009048 177 FRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKD--------LLDDAY 246 (545)
Q Consensus 177 fr~~~~~l~~l~~~~~~-~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~-r~ni~~~v~~~~--------~~~~~~ 246 (545)
+ -+.-++...+. .++++||||++.++.. +...+ .+|..+..+-. ...+...+.... ......
T Consensus 309 l-----lL~llk~~~~~~rq~ILmSATl~~dv~~-l~~~~--~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 309 I-----IIAVARKHIDKIRSLFLMTATLEDDRDR-IKEFF--PNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred H-----HHHHHHHhhhhcCEEEEEccCCcHhHHH-HHHHh--cCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHH
Confidence 1 11112222222 4799999999877643 44433 35554443211 112211111000 001111
Q ss_pred HHHHHHHHh---CCCccEEEEecchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHH-HcCCCcEEEecccccc
Q 009048 247 ADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDW-ISSRKQVVVATVAFGM 320 (545)
Q Consensus 247 ~~l~~~l~~---~~~~~~IIf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f-~~g~~~VLVaT~a~~~ 320 (545)
..+...+.. ..++++||||+++.+++.+++.|.+. ++.+..+||+|++. .+.+++| ++|+.+|||||+++++
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAER 458 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLES 458 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhc
Confidence 122222222 23457999999999999999999987 78999999999975 4666777 6899999999999999
Q ss_pred ccccCCCcEEEEeC---CCC---------CHHHHHHHHhhccCCCCCCeEEEEeccccHH
Q 009048 321 GIDRKDVRLVCHFN---IPK---------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (545)
Q Consensus 321 GiD~p~v~~VI~~~---~p~---------s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~ 368 (545)
|||+|+|++||++| .|. |.++|.||+|||||. .+|.|+.+|+.++..
T Consensus 459 GIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 459 SVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLK 517 (675)
T ss_pred cccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhH
Confidence 99999999999999 665 889999999999999 699999999987753
No 63
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.9e-33 Score=297.65 Aligned_cols=325 Identities=21% Similarity=0.181 Sum_probs=233.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEEcChHHHHHHHHHHHHH---
Q 009048 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE--- 100 (545)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~aL~~qq~~~l~~--- 100 (545)
.++.++.+|+. ++|.|..++..++.|+ |+.|.||+|||++|.+|++.. +..++||+|++.|+.|..+.+..
T Consensus 93 rEa~~R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 93 REASGRVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred HHHHHHHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 45666778887 7899999999999999 999999999999999999853 67899999999999988888765
Q ss_pred -cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh----------------------hhccC
Q 009048 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK----------------------IHSRG 157 (545)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~----------------------~~~~~ 157 (545)
+|+.+.++.++.....+...+ ..+|+|+|.--+.-.-+...+.. ..-..
T Consensus 170 ~lGlsv~~i~gg~~~~~r~~~y--------~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 170 ALGLTVGCVVEDQSPDERRAAY--------GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred hcCCEEEEEeCCCCHHHHHHHc--------CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 589999888887655443322 36899999875432221111110 01124
Q ss_pred CccEEEEeccccccc-----------c--CCCCHHHHHHHHHHHHhC---------------------------------
Q 009048 158 LLNLVAIDEAHCISS-----------W--GHDFRPSYRKLSSLRNYL--------------------------------- 191 (545)
Q Consensus 158 ~l~~iViDEaH~i~~-----------~--g~~fr~~~~~l~~l~~~~--------------------------------- 191 (545)
.+.+.||||+|.++= - ..+....|..+..+...+
T Consensus 242 ~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~ 321 (656)
T PRK12898 242 GLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLP 321 (656)
T ss_pred ccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcch
Confidence 478999999998731 0 000001111111000000
Q ss_pred ---------------------------------------------------------------CC---------------
Q 009048 192 ---------------------------------------------------------------PD--------------- 193 (545)
Q Consensus 192 ---------------------------------------------------------------~~--------------- 193 (545)
.+
T Consensus 322 ~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~ 401 (656)
T PRK12898 322 PAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITY 401 (656)
T ss_pred hhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehH
Confidence 00
Q ss_pred -------cCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCccee--eeecccchhhHHHHHHHHHHhC--CCccEE
Q 009048 194 -------VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKAN--GDTCAI 262 (545)
Q Consensus 194 -------~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~--~v~~~~~~~~~~~~l~~~l~~~--~~~~~I 262 (545)
..+.+||||+... ..++...+++. ++..+.++|+... .........++...|.+.+... .+.++|
T Consensus 402 q~~Fr~Y~kl~GmTGTa~~~-~~El~~~y~l~---vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvL 477 (656)
T PRK12898 402 QRFFRRYLRLAGMTGTAREV-AGELWSVYGLP---VVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVL 477 (656)
T ss_pred HHHHHhhHHHhcccCcChHH-HHHHHHHHCCC---eEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 0267888888754 46667777664 3334555555422 1111122356777787777653 256899
Q ss_pred EEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccC---CCc-----EEEEeC
Q 009048 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFN 334 (545)
Q Consensus 263 If~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p---~v~-----~VI~~~ 334 (545)
|||+|++.++.++..|.+.|+++..+||+++..++ .+..+..+...|+|||+++|||+|++ +|+ +||+++
T Consensus 478 Ift~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~--~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d 555 (656)
T PRK12898 478 VGTRSVAASERLSALLREAGLPHQVLNAKQDAEEA--AIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTE 555 (656)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHH--HHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcC
Confidence 99999999999999999999999999998765544 44555556667999999999999999 777 999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCeEEEEeccccHH
Q 009048 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (545)
Q Consensus 335 ~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~ 368 (545)
+|.|...|.||+||+||.|.+|.++.|++.+|.-
T Consensus 556 ~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 556 RHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred CCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 9999999999999999999999999999987743
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.3e-33 Score=280.33 Aligned_cols=315 Identities=21% Similarity=0.258 Sum_probs=232.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHHHHHHHHHHHH-cCCc---eeE
Q 009048 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKE-KGIA---GEF 107 (545)
Q Consensus 36 ~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL~~qq~~~l~~-~gi~---~~~ 107 (545)
.-++|.+|..+....+.+ ++++++|||-|||+++.+-+.. .++.+|+++||+-|+.|+...+.+ .|++ ...
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheee
Confidence 346899999999888765 9999999999999988766653 255899999999999999999988 6774 457
Q ss_pred ecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH-
Q 009048 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS- 186 (545)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~- 186 (545)
+.+......+...|.. .+++++||..+.+.- +....+...+.++|+||||+-.. + -+|-.+.+
T Consensus 92 ltGev~p~~R~~~w~~-------~kVfvaTPQvveNDl----~~Grid~~dv~~lifDEAHRAvG-n----yAYv~Va~~ 155 (542)
T COG1111 92 LTGEVRPEEREELWAK-------KKVFVATPQVVENDL----KAGRIDLDDVSLLIFDEAHRAVG-N----YAYVFVAKE 155 (542)
T ss_pred ecCCCChHHHHHHHhh-------CCEEEeccHHHHhHH----hcCccChHHceEEEechhhhccC-c----chHHHHHHH
Confidence 7888888888877753 689999998886543 23344455689999999999653 1 23555554
Q ss_pred HHHhCCCcCEEEEEcCCChh--hHHHHHHHhcCCCCeEEecc--------------------------------------
Q 009048 187 LRNYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLKSS-------------------------------------- 226 (545)
Q Consensus 187 l~~~~~~~~~l~lTAT~~~~--~~~~i~~~l~~~~~~~~~~~-------------------------------------- 226 (545)
......+..+++||||+... -...+++.|++.+-.+-...
T Consensus 156 y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 156 YLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPR 235 (542)
T ss_pred HHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 33334467799999999754 34566777776532221100
Q ss_pred -------------C--CCCcc------eeeeecccch-------------------------------------------
Q 009048 227 -------------F--NRPNL------FYEVRYKDLL------------------------------------------- 242 (545)
Q Consensus 227 -------------~--~r~ni------~~~v~~~~~~------------------------------------------- 242 (545)
. ...++ .+........
T Consensus 236 Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~ 315 (542)
T COG1111 236 LKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK 315 (542)
T ss_pred HHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc
Confidence 0 00000 0000000000
Q ss_pred -------------------------------hhHHHHHHH----HHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEE-
Q 009048 243 -------------------------------DDAYADLCS----VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA- 286 (545)
Q Consensus 243 -------------------------------~~~~~~l~~----~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~- 286 (545)
..++..+.+ .++..++.++|||++.|++++.+.+.|.+.|+.+.
T Consensus 316 ~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~ 395 (542)
T COG1111 316 GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARV 395 (542)
T ss_pred cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCccee
Confidence 011112222 22334567899999999999999999999888763
Q ss_pred E--------ecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeE
Q 009048 287 A--------YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358 (545)
Q Consensus 287 ~--------~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~ 358 (545)
. ...||++++..+++++|++|+++|||||++.++|+|+|+|++||.|++..|..-++||.||+||. ++|..
T Consensus 396 rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv 474 (542)
T COG1111 396 RFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRV 474 (542)
T ss_pred EEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeE
Confidence 2 33589999999999999999999999999999999999999999999999999999999999998 68999
Q ss_pred EEEeccccHH
Q 009048 359 LLYYGMDDRR 368 (545)
Q Consensus 359 i~~~~~~d~~ 368 (545)
++++...+..
T Consensus 475 ~vLvt~gtrd 484 (542)
T COG1111 475 VVLVTEGTRD 484 (542)
T ss_pred EEEEecCchH
Confidence 9998877443
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=312.59 Aligned_cols=333 Identities=23% Similarity=0.263 Sum_probs=245.0
Q ss_pred hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----CCeEEEEcChHHHHHHHHH
Q 009048 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVI 96 (545)
Q Consensus 22 ~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----~~~~lVi~P~~aL~~qq~~ 96 (545)
..+.+...|.. .|...|+++|.+|+..+.+|+|++|..|||||||+||++|++.. ..++|+|.||+||++||++
T Consensus 55 ~~~~l~~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 55 RDESLKSALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAE 133 (851)
T ss_pred hhhHHHHHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHH
Confidence 34445666665 58888999999999999999999999999999999999999852 4568999999999999999
Q ss_pred HHHHc----C--CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccc
Q 009048 97 GLKEK----G--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (545)
Q Consensus 97 ~l~~~----g--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (545)
+|+++ + +.+...++......+..+.. . ..+|++++|+|+-.......-.-......+++|||||+|-+
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~----~--pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIR----N--PPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHh----C--CCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 99873 3 56666677776666654432 2 37899999998754221111111112233899999999987
Q ss_pred cc-cCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeE-EeccCCCCcceeeeeccc-------
Q 009048 171 SS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKD------- 240 (545)
Q Consensus 171 ~~-~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~-~~~~~~r~ni~~~v~~~~------- 240 (545)
-. .|.+.....++|..+...++ +.++|+.|||...... ....+....... +..+-.+....+.+...+
T Consensus 208 rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e--~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~ 285 (851)
T COG1205 208 RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE--FAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAE 285 (851)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH--HHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhh
Confidence 54 56667777778877777776 6788999999876542 233333333332 322222222222222222
Q ss_pred ----chhhHHHHHHHHHHhCCCccEEEEecchhhHHHHH----HHHHhCC----CcEEEecCCCCHHHHHHHHHHHHcCC
Q 009048 241 ----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS----AYLSAGG----ISCAAYHAGLNDKARSSVLDDWISSR 308 (545)
Q Consensus 241 ----~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~----~~L~~~g----~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (545)
........+...+-. .+-++|+|+.+++.++.++ ..+...+ ..+..|+|++..++|..+...|++|+
T Consensus 286 ~~r~s~~~~~~~~~~~~~~-~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 286 SIRRSALAELATLAALLVR-NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred hcccchHHHHHHHHHHHHH-cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC
Confidence 111222223333222 3567999999999999998 4444445 56889999999999999999999999
Q ss_pred CcEEEeccccccccccCCCcEEEEeCCCC-CHHHHHHHHhhccCCCCCCeEEEEecc
Q 009048 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (545)
Q Consensus 309 ~~VLVaT~a~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~~~~i~~~~~ 364 (545)
..++++|+++.-|||+.+++.||..+.|. |..++.|+.|||||.++.+..++.+..
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 99999999999999999999999999999 999999999999999977777766653
No 66
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.2e-32 Score=304.78 Aligned_cols=304 Identities=17% Similarity=0.143 Sum_probs=211.5
Q ss_pred HHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEEcChHHHHHHHHHHHHH-cCCceeEecccccHHHHH
Q 009048 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKT 118 (545)
Q Consensus 43 Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~aL~~qq~~~l~~-~gi~~~~~~~~~~~~~~~ 118 (545)
-.++++++.++++++++|+||||||.+|.++++.. .+.++|+.|++.++.+...++.+ ++.......+......
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~-- 84 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE-- 84 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc--
Confidence 34566777788999999999999999999988853 56899999999999999998854 4433211111100000
Q ss_pred HHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc-ccccCCCCHHHHHHHHHHHHh-CCCcCE
Q 009048 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNY-LPDVPI 196 (545)
Q Consensus 119 ~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~-i~~~g~~fr~~~~~l~~l~~~-~~~~~~ 196 (545)
. ....+.+|+|+||.++. ..+........+++|||||||. ..+- ||--. .+..+... .++.++
T Consensus 85 ----~--~~s~~t~I~v~T~G~Ll-----r~l~~d~~L~~v~~VIiDEaHER~L~~--Dl~L~--ll~~i~~~lr~dlql 149 (819)
T TIGR01970 85 ----N--KVSRRTRLEVVTEGILT-----RMIQDDPELDGVGALIFDEFHERSLDA--DLGLA--LALDVQSSLREDLKI 149 (819)
T ss_pred ----c--ccCCCCcEEEECCcHHH-----HHHhhCcccccCCEEEEeccchhhhcc--chHHH--HHHHHHHhcCCCceE
Confidence 0 11123678778776543 2333344567799999999995 4431 23211 12233333 357899
Q ss_pred EEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhh----HHHHHHHHHHhCCCccEEEEecchhhHH
Q 009048 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDD----AYADLCSVLKANGDTCAIVYCLERTTCD 272 (545)
Q Consensus 197 l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~----~~~~l~~~l~~~~~~~~IIf~~t~~~~~ 272 (545)
++||||++..... ..++ ..+.+...+...| +...+........ ....+..++.. ..+.+|||++++.+++
T Consensus 150 IlmSATl~~~~l~---~~l~-~~~vI~~~gr~~p-Ve~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~ 223 (819)
T TIGR01970 150 LAMSATLDGERLS---SLLP-DAPVVESEGRSFP-VEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIR 223 (819)
T ss_pred EEEeCCCCHHHHH---HHcC-CCcEEEecCccee-eeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHH
Confidence 9999999876532 3332 2233322221111 1111111111111 12234444443 3467999999999999
Q ss_pred HHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCC------------
Q 009048 273 ELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------ 337 (545)
Q Consensus 273 ~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~------------ 337 (545)
.+++.|.+ .++.+..+||+|++++|..+++.|.+|+.+|||||+++++|||+|+|++||++++|+
T Consensus 224 ~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~ 303 (819)
T TIGR01970 224 RVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITR 303 (819)
T ss_pred HHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCce
Confidence 99999987 478899999999999999999999999999999999999999999999999999985
Q ss_pred ------CHHHHHHHHhhccCCCCCCeEEEEeccccHHHH
Q 009048 338 ------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (545)
Q Consensus 338 ------s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~ 370 (545)
|.++|.||+|||||. .+|.|+.+|+..+...+
T Consensus 304 L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l 341 (819)
T TIGR01970 304 LETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRL 341 (819)
T ss_pred eeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhh
Confidence 446799999999999 69999999998776544
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.3e-32 Score=295.61 Aligned_cols=325 Identities=20% Similarity=0.196 Sum_probs=238.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH--
Q 009048 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (545)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~-- 100 (545)
+..+.++.+|+ .+++.|.-++..+..|+ ++.|.||+|||++|.+|++. .+..+.|++|+..|+.|..+.+..
T Consensus 67 vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 67 VREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred HHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 44666778888 48899999988888877 99999999999999999973 578899999999999998888765
Q ss_pred --cCCceeEeccccc-HHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH---hhhccCCccEEEEeccccccc--
Q 009048 101 --KGIAGEFLSSTQT-MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS-- 172 (545)
Q Consensus 101 --~gi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~-- 172 (545)
+|+.+.++.++.. ...+...+ ..+|+|+||..++-.-+...+. .......+.++||||||.++=
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~y--------~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDe 215 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAIY--------EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDE 215 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHhc--------CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceecc
Confidence 6899998888877 55554322 2789999998775432222221 112335589999999998841
Q ss_pred ---------cCCCCHHHHHHHHHHHHhCC---------------------------------------------------
Q 009048 173 ---------WGHDFRPSYRKLSSLRNYLP--------------------------------------------------- 192 (545)
Q Consensus 173 ---------~g~~fr~~~~~l~~l~~~~~--------------------------------------------------- 192 (545)
-+..-...|..+..+...+.
T Consensus 216 a~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 295 (790)
T PRK09200 216 AQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRA 295 (790)
T ss_pred CCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHH
Confidence 00000011111111111000
Q ss_pred ---------------------------------------------C----------------------cCEEEEEcCCCh
Q 009048 193 ---------------------------------------------D----------------------VPILALTATAAP 205 (545)
Q Consensus 193 ---------------------------------------------~----------------------~~~l~lTAT~~~ 205 (545)
+ .++.+||+|+..
T Consensus 296 ~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t 375 (790)
T PRK09200 296 HVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKT 375 (790)
T ss_pred HHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChH
Confidence 0 015667777643
Q ss_pred hhHHHHHHHhcCCCCeEEeccCCCCcceeeeec--ccchhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhC
Q 009048 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (545)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~ 281 (545)
. ..++...+++ .++..+.++|........ .....++...|.+.+.. ..+.++||||+|++.++.++..|.+.
T Consensus 376 ~-~~e~~~~Y~l---~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 376 E-EKEFFEVYNM---EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred H-HHHHHHHhCC---cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 2 2344444433 344556667766543321 12235677777777754 35678999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccccccccc---CCCc-----EEEEeCCCCCHHHHHHHHhhccCCC
Q 009048 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR---KDVR-----LVCHFNIPKSMEAFYQESGRAGRDQ 353 (545)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~---p~v~-----~VI~~~~p~s~~~y~Qr~GRagR~g 353 (545)
|+++..+||++.+.++..+...+..| .|+|||+++|||+|+ |+|. +||++++|.|...|.||+||+||.|
T Consensus 452 gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G 529 (790)
T PRK09200 452 GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG 529 (790)
T ss_pred CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC
Confidence 99999999999999988888777766 799999999999999 6999 9999999999999999999999999
Q ss_pred CCCeEEEEeccccH
Q 009048 354 LPSKSLLYYGMDDR 367 (545)
Q Consensus 354 ~~~~~i~~~~~~d~ 367 (545)
.+|.++.|++..|.
T Consensus 530 ~~G~s~~~is~eD~ 543 (790)
T PRK09200 530 DPGSSQFFISLEDD 543 (790)
T ss_pred CCeeEEEEEcchHH
Confidence 99999999998764
No 68
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.5e-32 Score=305.09 Aligned_cols=298 Identities=19% Similarity=0.237 Sum_probs=209.4
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEEcChHHHHHHHHHHHHH-cCCc----eeEecccccHH
Q 009048 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIA----GEFLSSTQTMQ 115 (545)
Q Consensus 44 ~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~aL~~qq~~~l~~-~gi~----~~~~~~~~~~~ 115 (545)
.+++.++.+++++++.||||||||.+|.++++.. .++++|+.|++.++.+..+.+.+ +|.. +.+...+..
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~-- 88 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES-- 88 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc--
Confidence 4566777788999999999999999999998864 36899999999999999998854 4433 222221110
Q ss_pred HHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCc
Q 009048 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDV 194 (545)
Q Consensus 116 ~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~ 194 (545)
......+|+|+||.++. ..+........+++|||||+|..+- ..|+. +..+..+... .++.
T Consensus 89 ----------~~~~~t~I~v~T~G~Ll-----r~l~~d~~L~~v~~IIlDEaHER~l-~~Dl~--L~ll~~i~~~lr~~l 150 (812)
T PRK11664 89 ----------KVGPNTRLEVVTEGILT-----RMIQRDPELSGVGLVILDEFHERSL-QADLA--LALLLDVQQGLRDDL 150 (812)
T ss_pred ----------ccCCCCcEEEEChhHHH-----HHHhhCCCcCcCcEEEEcCCCcccc-ccchH--HHHHHHHHHhCCccc
Confidence 01123567777776542 2333344567799999999997321 11221 1122233343 3578
Q ss_pred CEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHH-----HHHHHHHHhCCCccEEEEecchh
Q 009048 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAY-----ADLCSVLKANGDTCAIVYCLERT 269 (545)
Q Consensus 195 ~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~-----~~l~~~l~~~~~~~~IIf~~t~~ 269 (545)
++++||||++..... ..+. ..+.+...+...| +...+..... .+++ ..+...+.. ..+.+|||+++++
T Consensus 151 qlilmSATl~~~~l~---~~~~-~~~~I~~~gr~~p-V~~~y~~~~~-~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ 223 (812)
T PRK11664 151 KLLIMSATLDNDRLQ---QLLP-DAPVIVSEGRSFP-VERRYQPLPA-HQRFDEAVARATAELLRQ-ESGSLLLFLPGVG 223 (812)
T ss_pred eEEEEecCCCHHHHH---HhcC-CCCEEEecCcccc-ceEEeccCch-hhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHH
Confidence 999999999876432 2221 2233322221111 2111111111 1122 234444443 3568999999999
Q ss_pred hHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCC---------
Q 009048 270 TCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK--------- 337 (545)
Q Consensus 270 ~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~--------- 337 (545)
+++.+++.|.+ .++.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|+|++||++++|+
T Consensus 224 ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g 303 (812)
T PRK11664 224 EIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTG 303 (812)
T ss_pred HHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCC
Confidence 99999999987 578899999999999999999999999999999999999999999999999988875
Q ss_pred ---------CHHHHHHHHhhccCCCCCCeEEEEeccccHHH
Q 009048 338 ---------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (545)
Q Consensus 338 ---------s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~ 369 (545)
|.++|.||+|||||. .+|.|+.+|+..+...
T Consensus 304 ~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 304 LTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred cceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 446899999999999 5999999999876654
No 69
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.7e-31 Score=303.40 Aligned_cols=312 Identities=21% Similarity=0.275 Sum_probs=221.8
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHHHHHHHHHHHHc-CC---ceeEe
Q 009048 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGEFL 108 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL~~qq~~~l~~~-gi---~~~~~ 108 (545)
-++|++|.+++..++.+ ++++++|||+|||+++++++.. .++++|||+|+++|+.|+.+.++.+ ++ .+..+
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 36899999999988877 9999999999999998877653 3689999999999999999999874 54 55566
Q ss_pred cccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHH-HHH
Q 009048 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL-SSL 187 (545)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l-~~l 187 (545)
++......+...+. +.+++++||+++.... +........+++|||||||++.... .|..+ ..+
T Consensus 93 ~g~~~~~~r~~~~~-------~~~iiv~T~~~l~~~l----~~~~~~~~~~~liVvDEaH~~~~~~-----~~~~i~~~~ 156 (773)
T PRK13766 93 TGEVSPEKRAELWE-------KAKVIVATPQVIENDL----IAGRISLEDVSLLIFDEAHRAVGNY-----AYVYIAERY 156 (773)
T ss_pred eCCCCHHHHHHHHh-------CCCEEEECHHHHHHHH----HcCCCChhhCcEEEEECCccccccc-----cHHHHHHHH
Confidence 66666555544442 2578999998764321 2223344568999999999986421 12222 234
Q ss_pred HHhCCCcCEEEEEcCCChh--hHHHHHHHhcCCCCeEEec-------cCCCCcceee-----------------------
Q 009048 188 RNYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLKS-------SFNRPNLFYE----------------------- 235 (545)
Q Consensus 188 ~~~~~~~~~l~lTAT~~~~--~~~~i~~~l~~~~~~~~~~-------~~~r~ni~~~----------------------- 235 (545)
+...+...+++||||+... ....+...|++....+... ....+.+.+.
T Consensus 157 ~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l 236 (773)
T PRK13766 157 HEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRL 236 (773)
T ss_pred HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHH
Confidence 4444566799999998432 2233344443221100000 0000000000
Q ss_pred -----------e--------------------------------------------------------------------
Q 009048 236 -----------V-------------------------------------------------------------------- 236 (545)
Q Consensus 236 -----------v-------------------------------------------------------------------- 236 (545)
.
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~ 316 (773)
T PRK13766 237 KKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARS 316 (773)
T ss_pred HHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccc
Confidence 0
Q ss_pred -----------------------ecccchhhHHHHHHHHHHh----CCCccEEEEecchhhHHHHHHHHHhCCCcEEEec
Q 009048 237 -----------------------RYKDLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289 (545)
Q Consensus 237 -----------------------~~~~~~~~~~~~l~~~l~~----~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h 289 (545)
........++..|.++++. .++.++||||+++..|+.+++.|...|+.+..+|
T Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~ 396 (773)
T PRK13766 317 SGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFV 396 (773)
T ss_pred cCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEE
Confidence 0000001233334444433 4677899999999999999999999999999998
Q ss_pred CC--------CCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEE
Q 009048 290 AG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (545)
Q Consensus 290 ~~--------l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~ 361 (545)
|. |++.+|..++++|++|+.+|||||+++++|+|+|++++||+|++|.+...|+||+||+||.| ++.++++
T Consensus 397 g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l 475 (773)
T PRK13766 397 GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVL 475 (773)
T ss_pred ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEE
Confidence 86 99999999999999999999999999999999999999999999999999999999999987 4777777
Q ss_pred ecccc
Q 009048 362 YGMDD 366 (545)
Q Consensus 362 ~~~~d 366 (545)
+....
T Consensus 476 ~~~~t 480 (773)
T PRK13766 476 IAKGT 480 (773)
T ss_pred EeCCC
Confidence 76543
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.3e-31 Score=289.05 Aligned_cols=323 Identities=18% Similarity=0.161 Sum_probs=228.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHH----
Q 009048 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK---- 99 (545)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~---- 99 (545)
..+..+.+| ++|+|.+++..+..++..++.|+||+|||++|.+|++. .+..++||+|++.|+.++.+.+.
T Consensus 60 rEa~~R~lg---lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 60 READKRVLG---MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred HHHHHhhcC---CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 344555666 46677777776666666899999999999999999864 45679999999999999998884
Q ss_pred HcCCceeEecccc-----cHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh---hhccCCccEEEEecccccc
Q 009048 100 EKGIAGEFLSSTQ-----TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS 171 (545)
Q Consensus 100 ~~gi~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~---~~~~~~l~~iViDEaH~i~ 171 (545)
.+|+.+.....+. ....+... ...+|+|+||..+...-+...+.. ......+.++||||||.++
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~--------y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKI--------YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHh--------CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 4688877655431 11122111 137899999998865544443322 1224568899999999984
Q ss_pred cc---------CC--CCHHHHHHHHHHHHhCC------------------------------------------------
Q 009048 172 SW---------GH--DFRPSYRKLSSLRNYLP------------------------------------------------ 192 (545)
Q Consensus 172 ~~---------g~--~fr~~~~~l~~l~~~~~------------------------------------------------ 192 (545)
-- |. .-...|.....+...+.
T Consensus 209 iDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~a 288 (762)
T TIGR03714 209 LDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLA 288 (762)
T ss_pred hccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHH
Confidence 20 00 00111211111111110
Q ss_pred ----------------------------------------------------------------------CcCEEEEEcC
Q 009048 193 ----------------------------------------------------------------------DVPILALTAT 202 (545)
Q Consensus 193 ----------------------------------------------------------------------~~~~l~lTAT 202 (545)
-.++.+||+|
T Consensus 289 l~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGT 368 (762)
T TIGR03714 289 LRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGT 368 (762)
T ss_pred HHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCC
Confidence 0125667777
Q ss_pred CChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeec--ccchhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHH
Q 009048 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYL 278 (545)
Q Consensus 203 ~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L 278 (545)
+... ..++...++ -.++..+.++|........ .....+++..+.+.+.. ..+.++||||+|++.++.++..|
T Consensus 369 a~~~-~~Ef~~iY~---l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L 444 (762)
T TIGR03714 369 GKVA-EKEFIETYS---LSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELL 444 (762)
T ss_pred ChhH-HHHHHHHhC---CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHH
Confidence 6432 234444333 3345556666665544221 11234677777777754 45678999999999999999999
Q ss_pred HhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccC---------CCcEEEEeCCCCCHHHHHHHHhhc
Q 009048 279 SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---------DVRLVCHFNIPKSMEAFYQESGRA 349 (545)
Q Consensus 279 ~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p---------~v~~VI~~~~p~s~~~y~Qr~GRa 349 (545)
.+.|+++..+||++.+.++..+..++..| .|+|||+++|+|+|++ ++.+|+++++|..... .||+||+
T Consensus 445 ~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRt 521 (762)
T TIGR03714 445 LREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRS 521 (762)
T ss_pred HHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcc
Confidence 99999999999999999988887776666 7999999999999999 9999999999988777 9999999
Q ss_pred cCCCCCCeEEEEeccccH
Q 009048 350 GRDQLPSKSLLYYGMDDR 367 (545)
Q Consensus 350 gR~g~~~~~i~~~~~~d~ 367 (545)
||.|.+|.++.|++..|.
T Consensus 522 GRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 522 GRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred cCCCCceeEEEEEccchh
Confidence 999999999999998774
No 71
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.2e-31 Score=289.18 Aligned_cols=302 Identities=17% Similarity=0.158 Sum_probs=206.2
Q ss_pred CCCHHHHHHHHHHHc-C--CCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHc-CCc---eeEecc
Q 009048 38 QFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK-GIA---GEFLSS 110 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~-g--~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~-gi~---~~~~~~ 110 (545)
.+||+|.+++..+.. | +..++++|||+|||++.+..+....+.+|||||+..|+.||.+.+.++ .+. +..+.+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg 334 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTS 334 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 589999999999884 3 378999999999999987666666788999999999999999999985 332 222222
Q ss_pred cccHHHHHHHHHhhhcCCCCccEEEECcccccChh-----hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH
Q 009048 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-----FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (545)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~-----~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (545)
.. +.. ......|+++|+.++.... ....+ .......+++||+||||.+.. +.|.
T Consensus 335 ~~----k~~-------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l-~~l~~~~~gLII~DEvH~lpA------~~fr--- 393 (732)
T TIGR00603 335 DA----KER-------FHGEAGVVVSTYSMVAHTGKRSYESEKVM-EWLTNREWGLILLDEVHVVPA------AMFR--- 393 (732)
T ss_pred Cc----ccc-------cccCCcEEEEEHHHhhcccccchhhhHHH-HHhccccCCEEEEEccccccH------HHHH---
Confidence 11 000 0112568889988775421 11112 222234589999999999854 1222
Q ss_pred HHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccC-------CCCcceeeeecc-------------------
Q 009048 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-------NRPNLFYEVRYK------------------- 239 (545)
Q Consensus 186 ~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~-------~r~ni~~~v~~~------------------- 239 (545)
.+...+.....++||||+...... +.....+-.|.++..+. ...+..+.....
T Consensus 394 ~il~~l~a~~RLGLTATP~ReD~~-~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~ 472 (732)
T TIGR00603 394 RVLTIVQAHCKLGLTATLVREDDK-ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRM 472 (732)
T ss_pred HHHHhcCcCcEEEEeecCcccCCc-hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhh
Confidence 233444556789999999754321 11111122344433211 001111100000
Q ss_pred ---cchhhHHHHHHHHHHhC--CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC-CCcEEE
Q 009048 240 ---DLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVV 313 (545)
Q Consensus 240 ---~~~~~~~~~l~~~l~~~--~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VLV 313 (545)
.....++..+..+++.+ .+.++||||.+...++.++..|. +..+||++++.+|..++++|+.| .+++||
T Consensus 473 ~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 473 LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 01123444544555543 66789999999999999988872 46689999999999999999865 889999
Q ss_pred eccccccccccCCCcEEEEeCCC-CCHHHHHHHHhhccCCCCCCeE-------EEEecccc
Q 009048 314 ATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKS-------LLYYGMDD 366 (545)
Q Consensus 314 aT~a~~~GiD~p~v~~VI~~~~p-~s~~~y~Qr~GRagR~g~~~~~-------i~~~~~~d 366 (545)
+|.++++|||+|++++||+++.| .|...|+||+||++|.+..+.+ +.+++.+.
T Consensus 548 ~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 548 LSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred EecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 99999999999999999999987 5999999999999999866554 55565544
No 72
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5.9e-31 Score=303.27 Aligned_cols=290 Identities=18% Similarity=0.284 Sum_probs=202.8
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh----cCCCeEEEEcChHHHHHHHHHHHH
Q 009048 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLK 99 (545)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l----~~~~~~lVi~P~~aL~~qq~~~l~ 99 (545)
.++.+.+.+..|+ .|+++|..+++.++.|+|++++||||+|||+ |.+|+. ..+.+++||+||++|+.|+.+.++
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHH
Confidence 3455556655565 5999999999999999999999999999997 555553 246789999999999999999988
Q ss_pred Hc----CCcee---EecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009048 100 EK----GIAGE---FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (545)
Q Consensus 100 ~~----gi~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (545)
.+ |+... .++++.+...+......+..+. .+|+++||..+.. .+.... . .++++||||||++.+
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~--~dIlV~Tp~rL~~-----~~~~l~-~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGD--FDILITTTMFLSK-----NYDELG-P-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHHH-----HHHHhc-C-CCCEEEEeChHhhhh
Confidence 75 33332 3567777766655555555543 6788887765422 122221 1 699999999999998
Q ss_pred cC---------CCCHHH-HHHH-------------------HHHHHhCC-CcC--EEEEEcCCChh-hHHHHHHHhcCCC
Q 009048 173 WG---------HDFRPS-YRKL-------------------SSLRNYLP-DVP--ILALTATAAPK-VQKDVMESLCLQN 219 (545)
Q Consensus 173 ~g---------~~fr~~-~~~l-------------------~~l~~~~~-~~~--~l~lTAT~~~~-~~~~i~~~l~~~~ 219 (545)
++ ..|.++ ...+ ..+.+..| ..+ ++++|||..+. +...+. .+
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~-----r~ 288 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLF-----RE 288 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHc-----cc
Confidence 65 236653 2221 11222333 233 56789995443 332221 22
Q ss_pred CeEEec---cCCCCcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecch---hhHHHHHHHHHhCCCcEEEecCCCC
Q 009048 220 PLVLKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER---TTCDELSAYLSAGGISCAAYHAGLN 293 (545)
Q Consensus 220 ~~~~~~---~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~---~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (545)
...+.. .....|+...+.... .....|.++++..+ ..+||||+|+ +.|+.++..|.+.|+++..+||+++
T Consensus 289 ll~~~v~~~~~~~r~I~~~~~~~~---~~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~ 364 (1171)
T TIGR01054 289 LLGFEVGGGSDTLRNVVDVYVEDE---DLKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP 364 (1171)
T ss_pred ccceEecCccccccceEEEEEecc---cHHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC
Confidence 222221 122234433322221 12345666666654 4699999999 9999999999999999999999997
Q ss_pred HHHHHHHHHHHHcCCCcEEEe----ccccccccccCC-CcEEEEeCCCC
Q 009048 294 DKARSSVLDDWISSRKQVVVA----TVAFGMGIDRKD-VRLVCHFNIPK 337 (545)
Q Consensus 294 ~~~R~~~~~~f~~g~~~VLVa----T~a~~~GiD~p~-v~~VI~~~~p~ 337 (545)
. .++++|++|+++|||| |++++||||+|+ |++||+||+|+
T Consensus 365 ~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 365 K----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred H----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 3 6899999999999999 589999999999 89999999997
No 73
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.7e-30 Score=285.86 Aligned_cols=314 Identities=19% Similarity=0.207 Sum_probs=231.1
Q ss_pred CCCHHHHHHHHHHHcC---CCEEEEcCCCchHHHHHHHHH---hcCCCeEEEEcChHHHHHHHHHHHHH-cCCceeEecc
Q 009048 38 QFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSS 110 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g---~d~lv~apTGsGKTl~~~lp~---l~~~~~~lVi~P~~aL~~qq~~~l~~-~gi~~~~~~~ 110 (545)
.+++.|.++++.+.++ +++++.||||+|||.+|+.++ +..++.+||++|+++|+.|+++.+++ +|..+..+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999874 789999999999999998654 45678899999999999999999987 6888999999
Q ss_pred cccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHH--HHHHHHH
Q 009048 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLR 188 (545)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~--~~l~~l~ 188 (545)
+.+...+...+..+..+. .+|+++|+..+.. ...++++|||||+|..+-+..+ .|.| +.+..++
T Consensus 224 ~~s~~~r~~~~~~~~~g~--~~IVVgTrsal~~-----------p~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~r 289 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGE--AKVVIGARSALFL-----------PFKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVVR 289 (679)
T ss_pred CCCHHHHHHHHHHHHcCC--CCEEEeccHHhcc-----------cccCCCEEEEECCCccccccCc-CCCCcHHHHHHHH
Confidence 998888877777776664 6888898865422 2455899999999998876654 4444 5677777
Q ss_pred HhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccC---CCCcceeeeecc--------cchhhHHHHHHHHHHhCC
Q 009048 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRYK--------DLLDDAYADLCSVLKANG 257 (545)
Q Consensus 189 ~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~ni~~~v~~~--------~~~~~~~~~l~~~l~~~~ 257 (545)
....+.+++++|||++.+....+.. |......+...+ ..|.+...-... ......+..+.+.+. .
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~--~ 365 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE--R 365 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH--c
Confidence 8888999999999998776654321 110111111111 122221111000 011223334444433 3
Q ss_pred CccEEEEecch------------------------------------------------------------hhHHHHHHH
Q 009048 258 DTCAIVYCLER------------------------------------------------------------TTCDELSAY 277 (545)
Q Consensus 258 ~~~~IIf~~t~------------------------------------------------------------~~~~~l~~~ 277 (545)
++++|||+|++ ..++.+++.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 44788887652 256788888
Q ss_pred HHhC--CCcEEEecCCCC--HHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCC--C----------CHHH
Q 009048 278 LSAG--GISCAAYHAGLN--DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP--K----------SMEA 341 (545)
Q Consensus 278 L~~~--g~~~~~~h~~l~--~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p--~----------s~~~ 341 (545)
|.+. +.++..+|+++. ..++..+++.|.+|+.+|||+|++++.|+|+|+|.+|+.++.. - ....
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 8886 788999999986 4678999999999999999999999999999999999766543 2 3467
Q ss_pred HHHHHhhccCCCCCCeEEEEeccccHHH
Q 009048 342 FYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (545)
Q Consensus 342 y~Qr~GRagR~g~~~~~i~~~~~~d~~~ 369 (545)
|+|++||+||.+..|.+++.....+...
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~~ 553 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHPV 553 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCHH
Confidence 9999999999999999997655444333
No 74
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.7e-31 Score=293.30 Aligned_cols=323 Identities=20% Similarity=0.242 Sum_probs=230.1
Q ss_pred CCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHhc---C-CCeEEEEcChHHHHHH
Q 009048 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA---K-PGIVLVVSPLIALMEN 93 (545)
Q Consensus 19 ~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~-g~d~lv~apTGsGKTl~~~lp~l~---~-~~~~lVi~P~~aL~~q 93 (545)
.+.+.+.+...++. .|+.++.+.|.+++..... ++|+++++|||||||+++++.++. . ++++|+|+|+++|+++
T Consensus 13 ~~~~~~~v~~i~~~-~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~E 91 (766)
T COG1204 13 KVKLDDRVLEILKG-DGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEE 91 (766)
T ss_pred cccccHHHHHHhcc-CChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHH
Confidence 34466777777775 7888888888888877664 599999999999999999888764 2 4799999999999999
Q ss_pred HHHHHH---HcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccc
Q 009048 94 QVIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (545)
Q Consensus 94 q~~~l~---~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (545)
.+++++ .+|+++....+........ -...+|+++|||.+..--+.. ......+++|||||+|.+
T Consensus 92 k~~~~~~~~~~GirV~~~TgD~~~~~~~---------l~~~~ViVtT~EK~Dsl~R~~----~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 92 KYEEFSRLEELGIRVGISTGDYDLDDER---------LARYDVIVTTPEKLDSLTRKR----PSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred HHHHhhhHHhcCCEEEEecCCcccchhh---------hccCCEEEEchHHhhHhhhcC----cchhhcccEEEEeeeeec
Confidence 999998 6899999888776533211 124789999999775311100 002345899999999999
Q ss_pred ccc--CCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCe-EEec-cCCCCcce-eeeeccc-----
Q 009048 171 SSW--GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKS-SFNRPNLF-YEVRYKD----- 240 (545)
Q Consensus 171 ~~~--g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~-~~~~-~~~r~ni~-~~v~~~~----- 240 (545)
.+. |.-.. .-+.+.+...+.+++++||||++.. .++..+++..... .+.. +..++... ..+....
T Consensus 159 ~d~~RG~~lE---~iv~r~~~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~ 233 (766)
T COG1204 159 GDRTRGPVLE---SIVARMRRLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKT 233 (766)
T ss_pred CCcccCceeh---hHHHHHHhhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCccceEEEEecCcccc
Confidence 763 33221 1244555666678999999999876 4667777665331 1111 11111111 1111111
Q ss_pred ----chhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC---------------------C-------------
Q 009048 241 ----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------G------------- 282 (545)
Q Consensus 241 ----~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~---------------------g------------- 282 (545)
..+..+..+.+.++ .++++||||+|++.+...|+.|... +
T Consensus 234 ~~~~~~~~~~~~v~~~~~--~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e 311 (766)
T COG1204 234 WPLLIDNLALELVLESLA--EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAE 311 (766)
T ss_pred ccccchHHHHHHHHHHHh--cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHH
Confidence 11222333333333 3568999999999999999998830 0
Q ss_pred ---CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEE----EeC-----CCCCHHHHHHHHhhcc
Q 009048 283 ---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFN-----IPKSMEAFYQESGRAG 350 (545)
Q Consensus 283 ---~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI----~~~-----~p~s~~~y~Qr~GRag 350 (545)
..++.+|+||+.++|..+.+.|+.|.++|||||++++.|||+|.-+.|| .|+ .+-+.-+|.|+.||||
T Consensus 312 ~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAG 391 (766)
T COG1204 312 LVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAG 391 (766)
T ss_pred HHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCC
Confidence 1357899999999999999999999999999999999999999655555 355 4557899999999999
Q ss_pred CCCC--CCeEEEEe
Q 009048 351 RDQL--PSKSLLYY 362 (545)
Q Consensus 351 R~g~--~~~~i~~~ 362 (545)
|.|- .|.++++.
T Consensus 392 RPg~d~~G~~~i~~ 405 (766)
T COG1204 392 RPGYDDYGEAIILA 405 (766)
T ss_pred CCCcCCCCcEEEEe
Confidence 9985 45566665
No 75
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.98 E-value=3.4e-30 Score=278.21 Aligned_cols=326 Identities=20% Similarity=0.184 Sum_probs=236.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH--
Q 009048 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (545)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~-- 100 (545)
+..+..+.+|+. +++.|.-+...+..|+ ++.|+||+|||++|.+|++. .+..+.|++|+..|+.|..+.+..
T Consensus 45 vrEa~~R~lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 45 VREASKRVLGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred HHHHHHHHhCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 446667788876 7888888888887776 99999999999999999852 456799999999999999888776
Q ss_pred --cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHH---HhhhccCCccEEEEeccccccc---
Q 009048 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS--- 172 (545)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~~--- 172 (545)
+|+.+.++.++.....+...+ ..+|+|+||-.+.-.-+...+ ........+.++||||+|.+.-
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y--------~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDea 193 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAY--------ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEA 193 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhh
Confidence 588999888887766554433 268999999876433322221 1123456689999999998842
Q ss_pred ------cCC--CCHHHHHHHHHHHHhCC----------------------------------------------------
Q 009048 173 ------WGH--DFRPSYRKLSSLRNYLP---------------------------------------------------- 192 (545)
Q Consensus 173 ------~g~--~fr~~~~~l~~l~~~~~---------------------------------------------------- 192 (545)
-|. .-...|.....+...+.
T Consensus 194 RtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~ 273 (745)
T TIGR00963 194 RTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAK 273 (745)
T ss_pred hhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHH
Confidence 010 00001111111100000
Q ss_pred ------------------------------------------------------------------CcCEEEEEcCCChh
Q 009048 193 ------------------------------------------------------------------DVPILALTATAAPK 206 (545)
Q Consensus 193 ------------------------------------------------------------------~~~~l~lTAT~~~~ 206 (545)
-.++.+||+|+...
T Consensus 274 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 353 (745)
T TIGR00963 274 ELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTE 353 (745)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHH
Confidence 00145667776433
Q ss_pred hHHHHHHHhcCCCCeEEeccCCCCcceeeeecc--cchhhHHHHHHHHHH--hCCCccEEEEecchhhHHHHHHHHHhCC
Q 009048 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLCSVLK--ANGDTCAIVYCLERTTCDELSAYLSAGG 282 (545)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~--~~~~~~~~~l~~~l~--~~~~~~~IIf~~t~~~~~~l~~~L~~~g 282 (545)
...+...+++ .++..+.++|......... ....+++..+.+.+. ...+.|+||||+|++.++.++..|.+.|
T Consensus 354 -~~E~~~iY~l---~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~g 429 (745)
T TIGR00963 354 -EEEFEKIYNL---EVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERG 429 (745)
T ss_pred -HHHHHHHhCC---CEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC
Confidence 2334444433 3445566666654432211 122456666665552 2357799999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCC-------CcEEEEeCCCCCHHHHHHHHhhccCCCCC
Q 009048 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD-------VRLVCHFNIPKSMEAFYQESGRAGRDQLP 355 (545)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~-------v~~VI~~~~p~s~~~y~Qr~GRagR~g~~ 355 (545)
++...+||+ +.+|...+..|..+...|+|||+++|||+|++. .-+||+++.|.|...|.|+.||+||.|.+
T Consensus 430 i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~ 507 (745)
T TIGR00963 430 IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDP 507 (745)
T ss_pred CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCC
Confidence 999999998 788999999999999999999999999999998 45999999999999999999999999999
Q ss_pred CeEEEEeccccHH
Q 009048 356 SKSLLYYGMDDRR 368 (545)
Q Consensus 356 ~~~i~~~~~~d~~ 368 (545)
|.+..|++..|.-
T Consensus 508 G~s~~~ls~eD~l 520 (745)
T TIGR00963 508 GSSRFFLSLEDNL 520 (745)
T ss_pred cceEEEEeccHHH
Confidence 9999999988743
No 76
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=4.6e-29 Score=279.89 Aligned_cols=316 Identities=17% Similarity=0.158 Sum_probs=218.4
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHh---cC--CCeEEEEcChHHHHHHHHHHHH-HcCCceeEec
Q 009048 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL---AK--PGIVLVVSPLIALMENQVIGLK-EKGIAGEFLS 109 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~lp~l---~~--~~~~lVi~P~~aL~~qq~~~l~-~~gi~~~~~~ 109 (545)
.|.|+|..++..++.. ..+|+.-.+|.|||+-..+.+- .. .+++|||||. +|..||...+. ++++....+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 4889999999887654 3688889999999976544331 22 3689999998 89999999985 5787776665
Q ss_pred ccccHHHHHHHHHhhhcCCCCccEEEECcccccC-hhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009048 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (545)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t-~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (545)
........ ..-...-...+++++|.+.+.. +.....+.. ..+++|||||||++..-...--..|..+..+.
T Consensus 231 ~~~~~~~~----~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~----~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 231 EERYAEAQ----HDADNPFETEQLVICSLDFLRRNKQRLEQALA----AEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred Ccchhhhc----ccccCccccCcEEEEEHHHhhhCHHHHHHHhh----cCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 44322111 0000111135788888887765 333333332 24899999999998621111123366666665
Q ss_pred HhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEE---------------------------------------------
Q 009048 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL--------------------------------------------- 223 (545)
Q Consensus 189 ~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~--------------------------------------------- 223 (545)
... ..+++||||+......+++..|.+-+|..+
T Consensus 303 ~~~--~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 303 EVI--PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred hcc--CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 543 358999999864333333333332222211
Q ss_pred -------------------------------------eccC----CCCcceeeeecc-----------------------
Q 009048 224 -------------------------------------KSSF----NRPNLFYEVRYK----------------------- 239 (545)
Q Consensus 224 -------------------------------------~~~~----~r~ni~~~v~~~----------------------- 239 (545)
+..- .-|.-.+.....
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 0000 000000000000
Q ss_pred --------------cchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHH-hCCCcEEEecCCCCHHHHHHHHHHH
Q 009048 240 --------------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDW 304 (545)
Q Consensus 240 --------------~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~-~~g~~~~~~h~~l~~~~R~~~~~~f 304 (545)
...+.++..|.++++...+.++||||+++..+..+++.|. ..|+.+..+||+|+..+|..+++.|
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 0011245567777777777899999999999999999995 5699999999999999999999999
Q ss_pred HcC--CCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEecc
Q 009048 305 ISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (545)
Q Consensus 305 ~~g--~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~ 364 (545)
+++ ..+|||||+++++|+|++.+++||+||+|++++.|.||+||+||.|+.+.+.+++..
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 974 699999999999999999999999999999999999999999999999887666543
No 77
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=5.1e-29 Score=262.17 Aligned_cols=326 Identities=20% Similarity=0.250 Sum_probs=261.8
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHh---cCCCeEEEEcC
Q 009048 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSP 86 (545)
Q Consensus 16 ~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g------~d~lv~apTGsGKTl~~~lp~l---~~~~~~lVi~P 86 (545)
...++.....+...+...++|+ |+..|++++..+... .+-++++..|||||+++++.++ ..+..+.+.+|
T Consensus 241 ~~~~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAP 319 (677)
T COG1200 241 SGIPLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAP 319 (677)
T ss_pred cCCCCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEecc
Confidence 3345666677788887789997 999999999999854 2459999999999998877665 46889999999
Q ss_pred hHHHHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEE
Q 009048 87 LIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (545)
Q Consensus 87 ~~aL~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~i 162 (545)
|--|+.|.++.+.+ +|+.+..+.+....+.+..+...+.+|. ++++++|+-.+.- ...++++.++
T Consensus 320 TEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~--~~ivVGTHALiQd---------~V~F~~LgLV 388 (677)
T COG1200 320 TEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE--IDIVVGTHALIQD---------KVEFHNLGLV 388 (677)
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC--CCEEEEcchhhhc---------ceeecceeEE
Confidence 99999999999776 6899999999999999999999999886 7888888765533 3345669999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCC-eEEeccCCCCcceeeeeccc
Q 009048 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNP-LVLKSSFNRPNLFYEVRYKD 240 (545)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~-~~~~~~~~r~ni~~~v~~~~ 240 (545)
||||=|+..- .+=..++++-. .+.++.||||+-|.... ...++--+. .+-..+..|..+.-.+....
T Consensus 389 IiDEQHRFGV---------~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~~ 457 (677)
T COG1200 389 IIDEQHRFGV---------HQRLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPHE 457 (677)
T ss_pred EEeccccccH---------HHHHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEeccc
Confidence 9999999432 23334666656 57899999999998766 444443333 33445667777776666666
Q ss_pred chhhHHHHHHHHHHhCCCccEEEEecchh--------hHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCc
Q 009048 241 LLDDAYADLCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (545)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~IIf~~t~~--------~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (545)
.....++.+...+. .+.++.|.|+-++ .++.+++.|+.. ++.+..+||.|++.++++++++|++|+++
T Consensus 458 ~~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ 535 (677)
T COG1200 458 RRPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID 535 (677)
T ss_pred cHHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc
Confidence 55666777766665 4567899998664 455677777753 56799999999999999999999999999
Q ss_pred EEEeccccccccccCCCcEEEEeCCCC-CHHHHHHHHhhccCCCCCCeEEEEecccc
Q 009048 311 VVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (545)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~~~~i~~~~~~d 366 (545)
|||||.+.+.|||+||....|..+.-. .+++.-|--||.||.+.++.|+++|.+..
T Consensus 536 ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 536 ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999999999888543 78999999999999999999999998765
No 78
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=6.9e-30 Score=273.21 Aligned_cols=290 Identities=20% Similarity=0.236 Sum_probs=213.1
Q ss_pred EEEcCCCchHHHHHHHHH---hcCCCeEEEEcChHHHHHHHHHHHHH-cCCceeEecccccHHHHHHHHHhhhcCCCCcc
Q 009048 57 FCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (545)
Q Consensus 57 lv~apTGsGKTl~~~lp~---l~~~~~~lVi~P~~aL~~qq~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (545)
++.+|||||||.+|+..+ +..++.+||++|+++|+.|+++.|++ +|..+..+++..+...+...+..+..+. .+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~--~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGE--IL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCC--CC
Confidence 468999999999986433 45678999999999999999999987 6888889999998888888887777664 67
Q ss_pred EEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHH--HHHHHHHHhCCCcCEEEEEcCCChhhHHH
Q 009048 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLPDVPILALTATAAPKVQKD 210 (545)
Q Consensus 133 il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~--~~l~~l~~~~~~~~~l~lTAT~~~~~~~~ 210 (545)
|+++|+..+.. ....+++|||||+|..+.|+.++ |.| +.+..++....+.|++++|||++.+....
T Consensus 79 IVVGTrsalf~-----------p~~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 79 VVIGTRSALFL-----------PFKNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAKKFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred EEECChHHHcC-----------cccCCCEEEEECCCccccccccC-CCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHH
Confidence 88888765532 23458999999999999887654 444 55777888889999999999988776553
Q ss_pred HHHHhcCCCCeEEec-----cCCCCcceeeeecc-----cchhhHHHHHHHHHHhCCCccEEEEecchhh----------
Q 009048 211 VMESLCLQNPLVLKS-----SFNRPNLFYEVRYK-----DLLDDAYADLCSVLKANGDTCAIVYCLERTT---------- 270 (545)
Q Consensus 211 i~~~l~~~~~~~~~~-----~~~r~ni~~~v~~~-----~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~---------- 270 (545)
+.. + ....+.. ....|.+...-... ......++.+.+.++ .++++|||+|++..
T Consensus 147 ~~~--g--~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~--~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 147 AKQ--K--AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA--AGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred Hhc--C--CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH--cCCcEEEEEeCCcCCCeeEhhhCc
Confidence 321 1 1111111 01112222111100 111233444444444 34579999877632
Q ss_pred --------------------------------------------------HHHHHHHHHhC--CCcEEEecCCCCHHHH-
Q 009048 271 --------------------------------------------------CDELSAYLSAG--GISCAAYHAGLNDKAR- 297 (545)
Q Consensus 271 --------------------------------------------------~~~l~~~L~~~--g~~~~~~h~~l~~~~R- 297 (545)
++++++.|.+. +.++..+|++++...+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 58888999886 7889999999987665
Q ss_pred -HHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCC------CC------CHHHHHHHHhhccCCCCCCeEEEEe-c
Q 009048 298 -SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI------PK------SMEAFYQESGRAGRDQLPSKSLLYY-G 363 (545)
Q Consensus 298 -~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~------p~------s~~~y~Qr~GRagR~g~~~~~i~~~-~ 363 (545)
..+++.|.+|+.+|||+|++++.|+|+|+|++|+.++. |. ....|+|.+||+||.+..|.+++.. .
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 88999999999999999999999999999999875543 32 3577999999999999999988654 4
Q ss_pred ccc
Q 009048 364 MDD 366 (545)
Q Consensus 364 ~~d 366 (545)
+++
T Consensus 381 p~~ 383 (505)
T TIGR00595 381 PNH 383 (505)
T ss_pred CCC
Confidence 443
No 79
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=6.4e-29 Score=274.68 Aligned_cols=325 Identities=20% Similarity=0.191 Sum_probs=265.1
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHc----C--CCEEEEcCCCchHHHHHH---HHHhcCCCeEEEEc
Q 009048 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----G--RDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVS 85 (545)
Q Consensus 15 ~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~----g--~d~lv~apTGsGKTl~~~---lp~l~~~~~~lVi~ 85 (545)
..-..++++.++...+...|+|. -|+-|..||+.+.+ + -|-++|+..|.|||-+++ +.|+..++.+.|++
T Consensus 572 ~~G~af~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLV 650 (1139)
T COG1197 572 KKGFAFPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLV 650 (1139)
T ss_pred ccCCCCCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEc
Confidence 33445778889999999999998 69999999999874 3 388999999999998876 45566789999999
Q ss_pred ChHHHHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccE
Q 009048 86 PLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (545)
Q Consensus 86 P~~aL~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~ 161 (545)
||.-|++|.++.+++ +++++..++...+.++...+...+..|. ++|+++|+-.+.+ .....++++
T Consensus 651 PTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~--vDIvIGTHrLL~k---------dv~FkdLGL 719 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGK--VDIVIGTHRLLSK---------DVKFKDLGL 719 (1139)
T ss_pred ccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCC--ccEEEechHhhCC---------CcEEecCCe
Confidence 999999999999876 6888999999999999999999999986 8898888866554 334556999
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc-CCCCcceeeeeccc
Q 009048 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKD 240 (545)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~ni~~~v~~~~ 240 (545)
+||||=|+..- ..-..+++...++-++.||||+-|.... +...|+++-.++.++ .+|-.+.-.+.+.+
T Consensus 720 lIIDEEqRFGV---------k~KEkLK~Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d 788 (1139)
T COG1197 720 LIIDEEQRFGV---------KHKEKLKELRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVSEYD 788 (1139)
T ss_pred EEEechhhcCc---------cHHHHHHHHhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEecCC
Confidence 99999999532 2223344445689999999999999887 778888887666554 45555555555443
Q ss_pred chhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc
Q 009048 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (545)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (545)
. .-.-+.|..-+ ..++++...+|.++..+++++.|++. ...++..||.|+..+-+.++..|.+|+.+|||||.+.
T Consensus 789 ~-~~ireAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTII 865 (1139)
T COG1197 789 D-LLIREAILREL--LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTII 865 (1139)
T ss_pred h-HHHHHHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeee
Confidence 2 12223333332 24567788889999999999999986 5678999999999999999999999999999999999
Q ss_pred ccccccCCCcEEEEeCCCC-CHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 319 GMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
+.|||+|+++.+|..+.-. .+++.+|--||+||.++.++|+++|.+.
T Consensus 866 EtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 866 ETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred ecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9999999999999776544 6899999999999999999999999764
No 80
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=7.2e-30 Score=272.27 Aligned_cols=315 Identities=24% Similarity=0.364 Sum_probs=210.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEEcChHHHHHHHHHHHHHcCCcee--Ee
Q 009048 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKGIAGE--FL 108 (545)
Q Consensus 36 ~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~-----~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~--~~ 108 (545)
.-.+|++|.+.++.++ |+++||++|||+|||+++...++. ..+++|+++|++-|+.||...+..+|++.. ..
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~ 138 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTGQ 138 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccceee
Confidence 3469999999999999 999999999999999988877764 368999999999999999988888887622 12
Q ss_pred ccc-ccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH-H
Q 009048 109 SST-QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS-S 186 (545)
Q Consensus 109 ~~~-~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~-~ 186 (545)
.++ .....+..++. ..+++++||.++..+-.-..... ++.+.++||||||+-.. .+. |..+. .
T Consensus 139 l~~~~~~~~r~~i~~-------s~~vff~TpQil~ndL~~~~~~~---ls~fs~iv~DE~Hra~k-n~~----Y~~Vmr~ 203 (746)
T KOG0354|consen 139 LGDTVPRSNRGEIVA-------SKRVFFRTPQILENDLKSGLHDE---LSDFSLIVFDECHRTSK-NHP----YNNIMRE 203 (746)
T ss_pred ccCccCCCchhhhhc-------ccceEEeChHhhhhhcccccccc---cceEEEEEEcccccccc-ccc----HHHHHHH
Confidence 222 22223322222 36889999987755321111111 45689999999999764 232 44332 3
Q ss_pred HHHh-CCCcCEEEEEcCCChhhH--HHHHHHhcCC----CC-------------eEEe----------------------
Q 009048 187 LRNY-LPDVPILALTATAAPKVQ--KDVMESLCLQ----NP-------------LVLK---------------------- 224 (545)
Q Consensus 187 l~~~-~~~~~~l~lTAT~~~~~~--~~i~~~l~~~----~~-------------~~~~---------------------- 224 (545)
+... ....++++||||+..... ..++..|... .. ..+.
T Consensus 204 ~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 204 YLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLL 283 (746)
T ss_pred HHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHH
Confidence 3332 224499999999975321 1112222111 00 0000
Q ss_pred --------------c-cCC-----------------CCccee---------------eeec----------------c--
Q 009048 225 --------------S-SFN-----------------RPNLFY---------------EVRY----------------K-- 239 (545)
Q Consensus 225 --------------~-~~~-----------------r~ni~~---------------~v~~----------------~-- 239 (545)
. ... ..+.++ .++. +
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~ 363 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKY 363 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHH
Confidence 0 000 000000 0000 0
Q ss_pred ---------------------------cchhhHHHHHHHHH----HhCCCccEEEEecchhhHHHHHHHHHh---CCCcE
Q 009048 240 ---------------------------DLLDDAYADLCSVL----KANGDTCAIVYCLERTTCDELSAYLSA---GGISC 285 (545)
Q Consensus 240 ---------------------------~~~~~~~~~l~~~l----~~~~~~~~IIf~~t~~~~~~l~~~L~~---~g~~~ 285 (545)
+....+++.+.+++ ...+..++||||.+|+.|..|..+|.+ .|+.+
T Consensus 364 ~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~ 443 (746)
T KOG0354|consen 364 LKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKA 443 (746)
T ss_pred HHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccc
Confidence 00001222233332 223566899999999999999999983 23333
Q ss_pred E--------EecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCe
Q 009048 286 A--------AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (545)
Q Consensus 286 ~--------~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~ 357 (545)
. ....+|++.+..+++++|++|+++|||||+++++|+|++.|+.||-||...|+...+||.|| ||.- .|.
T Consensus 444 ~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~ 521 (746)
T KOG0354|consen 444 EIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSK 521 (746)
T ss_pred ceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCe
Confidence 2 23358999999999999999999999999999999999999999999999999999999999 9986 688
Q ss_pred EEEEeccccHH
Q 009048 358 SLLYYGMDDRR 368 (545)
Q Consensus 358 ~i~~~~~~d~~ 368 (545)
|++++...+..
T Consensus 522 ~vll~t~~~~~ 532 (746)
T KOG0354|consen 522 CVLLTTGSEVI 532 (746)
T ss_pred EEEEEcchhHH
Confidence 88888754433
No 81
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4.1e-29 Score=269.02 Aligned_cols=331 Identities=20% Similarity=0.223 Sum_probs=238.4
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhc-------------CCCeEEEEcChHHHHHHHHH
Q 009048 31 RWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-------------KPGIVLVVSPLIALMENQVI 96 (545)
Q Consensus 31 ~~~fg~~~~r~~Q~~~i~~il~g-~d~lv~apTGsGKTl~~~lp~l~-------------~~~~~lVi~P~~aL~~qq~~ 96 (545)
+..|+|..|..+|.++++.+.+. .++|++||||+|||-.|+|.++. ..-++++|+|++||+.+.++
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 47899999999999999998865 59999999999999999988873 14579999999999999998
Q ss_pred HHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccc--cChhhHHHHHhhhccCCccEEEEeccccc
Q 009048 97 GLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT--ATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (545)
Q Consensus 97 ~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~--~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (545)
.+.+ +|+.+..+.+........ +. +.+++++|||.. .|-... ....-.+.+++|||||+|.+
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~te-i~--------~tqiiVTTPEKwDvvTRk~~---~d~~l~~~V~LviIDEVHlL 250 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTE-IA--------DTQIIVTTPEKWDVVTRKSV---GDSALFSLVRLVIIDEVHLL 250 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHH-HH--------hcCEEEecccceeeeeeeec---cchhhhhheeeEEeeeehhh
Confidence 8766 588888888776543332 21 389999999954 232111 00111234899999999998
Q ss_pred cc-cCCCCHHHHHHHHHHH-HhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCe--EEeccCCCC-cceeeee---cc---
Q 009048 171 SS-WGHDFRPSYRKLSSLR-NYLPDVPILALTATAAPKVQKDVMESLCLQNPL--VLKSSFNRP-NLFYEVR---YK--- 239 (545)
Q Consensus 171 ~~-~g~~fr~~~~~l~~l~-~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~--~~~~~~~r~-ni~~~v~---~~--- 239 (545)
-+ .|.-......+...+. .....+++++||||+|.- .|+..+|+.+.+. ..-....|| .+...+. .+
T Consensus 251 hd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~ 328 (1230)
T KOG0952|consen 251 HDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNR 328 (1230)
T ss_pred cCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeecccccccceeeeEEeeecccch
Confidence 65 4544333333332222 334578999999999876 5778888876322 222222233 2211111 11
Q ss_pred ----cchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCC-----------------------CcEEEecCCC
Q 009048 240 ----DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-----------------------ISCAAYHAGL 292 (545)
Q Consensus 240 ----~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g-----------------------~~~~~~h~~l 292 (545)
...+..+..+.+++.. +.+++|||.+|..+...|+.|.+.+ .....+|+||
T Consensus 329 ~~~~~~d~~~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm 406 (1230)
T KOG0952|consen 329 QQKKNIDEVCYDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGM 406 (1230)
T ss_pred hhhhhHHHHHHHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhccccc
Confidence 1112344556666653 5689999999999999999887521 1357899999
Q ss_pred CHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCC-----------CHHHHHHHHhhccCCC--CCCeEE
Q 009048 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-----------SMEAFYQESGRAGRDQ--LPSKSL 359 (545)
Q Consensus 293 ~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~-----------s~~~y~Qr~GRagR~g--~~~~~i 359 (545)
.-.+|..+...|..|.++||+||..++.|+|+|+ .+||..+.+. +.-+-+|..|||||.+ ..|.++
T Consensus 407 ~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~gi 485 (1230)
T KOG0952|consen 407 LRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGI 485 (1230)
T ss_pred chhhHHHHHHHHhcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEE
Confidence 9999999999999999999999999999999995 5666555442 5678899999999975 467888
Q ss_pred EEeccccHHHHHHHHHhcc
Q 009048 360 LYYGMDDRRRMEFILSKNQ 378 (545)
Q Consensus 360 ~~~~~~d~~~~~~i~~~~~ 378 (545)
++.+.+-......++....
T Consensus 486 IiTt~dkl~~Y~sLl~~~~ 504 (1230)
T KOG0952|consen 486 IITTRDKLDHYESLLTGQN 504 (1230)
T ss_pred EEecccHHHHHHHHHcCCC
Confidence 8888777777777766543
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=3.6e-29 Score=264.50 Aligned_cols=295 Identities=20% Similarity=0.261 Sum_probs=205.5
Q ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCc---eeEec
Q 009048 37 AQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA---GEFLS 109 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~---~~~~~ 109 (545)
-.+|++|.+|++++.+ ++..++++|||+|||.+++..+-.....+|||+|+.+|+.||.+.+...... ...+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~ 114 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYG 114 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceec
Confidence 3599999999999998 8899999999999999988777766667999999999999998887764332 12222
Q ss_pred ccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 009048 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (545)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (545)
++.. ...+ ..+.++|...+.... .+. ....+.+++||+||||++..- .|..+.....
T Consensus 115 ~~~~------------~~~~-~~i~vat~qtl~~~~---~l~-~~~~~~~~liI~DE~Hh~~a~------~~~~~~~~~~ 171 (442)
T COG1061 115 GGEK------------ELEP-AKVTVATVQTLARRQ---LLD-EFLGNEFGLIIFDEVHHLPAP------SYRRILELLS 171 (442)
T ss_pred Ccee------------ccCC-CcEEEEEhHHHhhhh---hhh-hhcccccCEEEEEccccCCcH------HHHHHHHhhh
Confidence 1110 0011 347777766665532 111 122235899999999998762 2344433322
Q ss_pred hCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc--------CCCCcceeeeecccc--------------------
Q 009048 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--------FNRPNLFYEVRYKDL-------------------- 241 (545)
Q Consensus 190 ~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~--------~~r~ni~~~v~~~~~-------------------- 241 (545)
. ..++++||||+.......+.....+..+.++..+ +..|..++.+.....
T Consensus 172 ~--~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 172 A--AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred c--ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 2 2229999999875442222222222224443322 222222222211000
Q ss_pred ----------------hhhHHHHHHHHHHhC-CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH
Q 009048 242 ----------------LDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 304 (545)
Q Consensus 242 ----------------~~~~~~~l~~~l~~~-~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f 304 (545)
...+...+...+..+ .+.+++|||.+..+++.++..|...|+ +..+.+..+..+|..+++.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHH
Confidence 011222233334433 466899999999999999999999888 89999999999999999999
Q ss_pred HcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccC-CCCCCe
Q 009048 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSK 357 (545)
Q Consensus 305 ~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR-~g~~~~ 357 (545)
+.|.+++||++.++..|+|+|+++.+|...+..|...|+||+||.-| ...++.
T Consensus 329 r~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 329 RTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred HcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999 443444
No 83
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=8.1e-29 Score=281.50 Aligned_cols=299 Identities=18% Similarity=0.222 Sum_probs=198.9
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcC----hHHHHHHHHHHHHH-cCCceeEecc
Q 009048 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP----LIALMENQVIGLKE-KGIAGEFLSS 110 (545)
Q Consensus 42 ~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P----~~aL~~qq~~~l~~-~gi~~~~~~~ 110 (545)
.-.++++++..++.++++|+||||||. ++|.+.. .+.+++.-| +++|+.+..+.+.. +|-.+.+-..
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr 155 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec
Confidence 344566677677778889999999998 7885431 134445557 56777777766654 3433222110
Q ss_pred cccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc-ccccCCCCHHHHHHHHHHHH
Q 009048 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRN 189 (545)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~-i~~~g~~fr~~~~~l~~l~~ 189 (545)
. .. ....+.+|+|+||.++.. .+........+++|||||||. ..+ .||... .+..+..
T Consensus 156 f----------~~--~~s~~t~I~v~TpG~LL~-----~l~~d~~Ls~~~~IIIDEAHERsLn--~DfLLg--~Lk~lL~ 214 (1294)
T PRK11131 156 F----------ND--QVSDNTMVKLMTDGILLA-----EIQQDRLLMQYDTIIIDEAHERSLN--IDFILG--YLKELLP 214 (1294)
T ss_pred C----------cc--ccCCCCCEEEEChHHHHH-----HHhcCCccccCcEEEecCccccccc--cchHHH--HHHHhhh
Confidence 0 00 001236677777665432 223333466799999999995 555 346543 2444555
Q ss_pred hCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCC-cceeeeecccc---hhhHHHHHHHHH---HhCCCccEE
Q 009048 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDL---LDDAYADLCSVL---KANGDTCAI 262 (545)
Q Consensus 190 ~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-ni~~~v~~~~~---~~~~~~~l~~~l---~~~~~~~~I 262 (545)
..|+.++|++|||++.. .+.+.+ ...|.+...+...| .+.|....... ..+.+..+...+ ...+.+.+|
T Consensus 215 ~rpdlKvILmSATid~e---~fs~~F-~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdIL 290 (1294)
T PRK11131 215 RRPDLKVIITSATIDPE---RFSRHF-NNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDIL 290 (1294)
T ss_pred cCCCceEEEeeCCCCHH---HHHHHc-CCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEE
Confidence 55788999999999764 233333 33454333222212 22222111110 122333333322 234456899
Q ss_pred EEecchhhHHHHHHHHHhCCCc---EEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCC----
Q 009048 263 VYCLERTTCDELSAYLSAGGIS---CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---- 335 (545)
Q Consensus 263 If~~t~~~~~~l~~~L~~~g~~---~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~---- 335 (545)
||+++..+++.+++.|.+.+++ +..+||+|++++|..+++. .|..+|||||+++++|||+|+|++||+++.
T Consensus 291 VFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~ 368 (1294)
T PRK11131 291 IFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 368 (1294)
T ss_pred EEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccc
Confidence 9999999999999999988765 6789999999999999876 578899999999999999999999999863
Q ss_pred -----------C---CCHHHHHHHHhhccCCCCCCeEEEEeccccHHHH
Q 009048 336 -----------P---KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (545)
Q Consensus 336 -----------p---~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~ 370 (545)
| .|.++|.||+|||||. .+|.|+.+|+..|...+
T Consensus 369 ~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~ 416 (1294)
T PRK11131 369 RYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSR 416 (1294)
T ss_pred ccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhh
Confidence 3 4678999999999999 59999999998876543
No 84
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=2.5e-27 Score=270.36 Aligned_cols=300 Identities=18% Similarity=0.207 Sum_probs=198.2
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcChHHHHHHHHHHHHH-cCCceeEecccccHHH
Q 009048 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (545)
Q Consensus 44 ~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~aL~~qq~~~l~~-~gi~~~~~~~~~~~~~ 116 (545)
.+++.++.+++.+++.|+||||||. ++|.+.. .+.+++.-|.+--+.....++.+ +|.+.....+......
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~ 150 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH 150 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC
Confidence 4566777677788999999999998 6776531 24566667888777666666554 5554432222110000
Q ss_pred HHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc-ccccCCCCHHHHHHHHHHHHhCCCcC
Q 009048 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVP 195 (545)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~-i~~~g~~fr~~~~~l~~l~~~~~~~~ 195 (545)
. ....+.+|.|+|+.++. ..+.....+..+++|||||||. ..+. ||--. .+..+....|+.+
T Consensus 151 ------~--~~s~~T~I~~~TdGiLL-----r~l~~d~~L~~~~~IIIDEaHERsL~~--D~LL~--lLk~il~~rpdLK 213 (1283)
T TIGR01967 151 ------D--QVSSNTLVKLMTDGILL-----AETQQDRFLSRYDTIIIDEAHERSLNI--DFLLG--YLKQLLPRRPDLK 213 (1283)
T ss_pred ------c--ccCCCceeeeccccHHH-----HHhhhCcccccCcEEEEcCcchhhccc--hhHHH--HHHHHHhhCCCCe
Confidence 0 01123567777766542 2233333456799999999995 5542 34332 2344555568899
Q ss_pred EEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCC-cceeeeecccc---hhhHHHHHHHHHH---hCCCccEEEEecch
Q 009048 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDL---LDDAYADLCSVLK---ANGDTCAIVYCLER 268 (545)
Q Consensus 196 ~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-ni~~~v~~~~~---~~~~~~~l~~~l~---~~~~~~~IIf~~t~ 268 (545)
+|+||||+... .+.+.++ ..|.+...+...| .+.|....... ..+....+...+. ....+.+|||+++.
T Consensus 214 lIlmSATld~~---~fa~~F~-~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 214 IIITSATIDPE---RFSRHFN-NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred EEEEeCCcCHH---HHHHHhc-CCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 99999999754 3333332 3444433322211 22222111110 1122233332222 22456899999999
Q ss_pred hhHHHHHHHHHhCC---CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCC--------
Q 009048 269 TTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-------- 337 (545)
Q Consensus 269 ~~~~~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~-------- 337 (545)
.+++.+++.|.+.+ +.+..+||+|++++|..+++.+ +..+|||||+++++|||+|+|++||++++++
T Consensus 290 ~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~ 367 (1283)
T TIGR01967 290 REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRT 367 (1283)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccccc
Confidence 99999999999864 4588999999999999886543 3468999999999999999999999999543
Q ss_pred ----------CHHHHHHHHhhccCCCCCCeEEEEeccccHHH
Q 009048 338 ----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (545)
Q Consensus 338 ----------s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~ 369 (545)
|.++|.||+|||||.| +|.|+.+|+..+...
T Consensus 368 ~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 368 KVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred CccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 7789999999999998 999999999887654
No 85
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.6e-26 Score=252.05 Aligned_cols=325 Identities=20% Similarity=0.200 Sum_probs=235.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH--
Q 009048 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (545)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~-- 100 (545)
+.++.++.+|+. +++.|.-..-.+..|+ |+.|.||+|||++..+|++. .+..+-|++|+--|+.+..+.+..
T Consensus 69 vrEa~~R~~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 69 AREGAKRVLGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHH
Confidence 446777788876 7888988777777777 99999999999999988874 577899999999999998888665
Q ss_pred --cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH---hhhccCCccEEEEeccccccc---
Q 009048 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (545)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~--- 172 (545)
+|+.+.++.+..+...+...+ ..+|.|+|.--+.-.-+...+. ...-...+.+.||||+|.++=
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y--------~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDea 217 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAY--------NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEA 217 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHh--------cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccC
Confidence 799999998888887776554 3689999887665433333221 111234578899999998741
Q ss_pred --------cCCCCHHHHHHHHHHHHhCC--------------------Cc------------------------------
Q 009048 173 --------WGHDFRPSYRKLSSLRNYLP--------------------DV------------------------------ 194 (545)
Q Consensus 173 --------~g~~fr~~~~~l~~l~~~~~--------------------~~------------------------------ 194 (545)
-.......|..+..+...+. ..
T Consensus 218 rtPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~ 297 (796)
T PRK12906 218 RTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTAL 297 (796)
T ss_pred CCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhH
Confidence 01111112222111111100 00
Q ss_pred -------------------------------------------------------------------------------C
Q 009048 195 -------------------------------------------------------------------------------P 195 (545)
Q Consensus 195 -------------------------------------------------------------------------------~ 195 (545)
+
T Consensus 298 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~k 377 (796)
T PRK12906 298 AHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKK 377 (796)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcch
Confidence 1
Q ss_pred EEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeec--ccchhhHHHHHHHHHHh--CCCccEEEEecchhhH
Q 009048 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTC 271 (545)
Q Consensus 196 ~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~ 271 (545)
+.+||+|+... ..++.+.+++ .++..+.++|.+...... ......++..+.+.+.. ..+.|+||||+|+..+
T Consensus 378 l~GmTGTa~~e-~~Ef~~iY~l---~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~s 453 (796)
T PRK12906 378 LSGMTGTAKTE-EEEFREIYNM---EVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESS 453 (796)
T ss_pred hhccCCCCHHH-HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 44555555432 2333333332 244455566655433321 11235677777777743 3678999999999999
Q ss_pred HHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccC---CCc-----EEEEeCCCCCHHHHH
Q 009048 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNIPKSMEAFY 343 (545)
Q Consensus 272 ~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p---~v~-----~VI~~~~p~s~~~y~ 343 (545)
+.++..|.+.|++...+||++...++..+.+++..|. |+|||+++|||+|++ +|. +||+++.|.|...|.
T Consensus 454 e~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~ 531 (796)
T PRK12906 454 ERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDN 531 (796)
T ss_pred HHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHH
Confidence 9999999999999999999999888888888877776 999999999999994 899 999999999999999
Q ss_pred HHHhhccCCCCCCeEEEEeccccH
Q 009048 344 QESGRAGRDQLPSKSLLYYGMDDR 367 (545)
Q Consensus 344 Qr~GRagR~g~~~~~i~~~~~~d~ 367 (545)
|+.||+||.|.+|.+..|++.+|.
T Consensus 532 Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 532 QLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HHhhhhccCCCCcceEEEEeccch
Confidence 999999999999999999998864
No 86
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.4e-28 Score=227.55 Aligned_cols=297 Identities=17% Similarity=0.277 Sum_probs=212.9
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCC------CeEEEEcCh
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP------GIVLVVSPL 87 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~------~~~lVi~P~ 87 (545)
+..|..+.+.+++.+++-. .||..|...|.++|+...-|-|++++|..|-|||.+|.+..++.- -.++|+|.|
T Consensus 41 ssgfrdfllkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmcht 119 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHT 119 (387)
T ss_pred ccchhhhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEecc
Confidence 4567788999999999997 699999999999999999999999999999999999999888752 248999999
Q ss_pred HHHHHHHHHHHHHc-----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH--hhhccCCcc
Q 009048 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLN 160 (545)
Q Consensus 88 ~aL~~qq~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~--~~~~~~~l~ 160 (545)
++|+-|......++ +++...+.++...+........ . ..| .++|||++..+. +..+...+.
T Consensus 120 relafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~--Phi------vVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 120 RELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----C--PHI------VVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----C--CeE------EEcCcHHHHHHHHhccCchhhcc
Confidence 99999987776553 4666677777665554444332 2 223 566777666663 344566688
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc-CCC---Ccc-ee
Q 009048 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNR---PNL-FY 234 (545)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r---~ni-~~ 234 (545)
.+|+|||+.+.+|- |.|.+.. ++.+..| ..+++.+|||++.+.+.-..+. +.+|..+-.. -.. -.+ .|
T Consensus 188 hFvlDEcdkmle~l-DMrRDvQ---Eifr~tp~~KQvmmfsatlskeiRpvC~kF--mQdPmEi~vDdE~KLtLHGLqQ~ 261 (387)
T KOG0329|consen 188 HFVLDECDKMLEQL-DMRRDVQ---EIFRMTPHEKQVMMFSATLSKEIRPVCHKF--MQDPMEIFVDDEAKLTLHGLQQY 261 (387)
T ss_pred eeehhhHHHHHHHH-HHHHHHH---HHhhcCcccceeeeeeeecchhhHHHHHhh--hcCchhhhccchhhhhhhhHHHH
Confidence 99999999998863 3554444 4444444 7889999999998876533332 3455422111 000 011 11
Q ss_pred eeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEe
Q 009048 235 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (545)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (545)
.+..++ .++-..+.+++....-..++||+.+... | + | ..+ +||
T Consensus 262 YvkLke--~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~va 304 (387)
T KOG0329|consen 262 YVKLKE--NEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVA 304 (387)
T ss_pred HHhhhh--hhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h----------h---hhh-hHH
Confidence 112122 2233334444444344479999987664 1 0 2 123 899
Q ss_pred ccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEecccc
Q 009048 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (545)
Q Consensus 315 T~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d 366 (545)
|+.||+|+|+..|..|++||+|.+.++|+||+|||||.|..|.++.|++..+
T Consensus 305 t~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 305 TDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred hhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 9999999999999999999999999999999999999999999999987654
No 87
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=253.16 Aligned_cols=329 Identities=20% Similarity=0.235 Sum_probs=233.0
Q ss_pred hcCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHhcC--------------CCeEEEEcChHHHHHHHHHH
Q 009048 33 HFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK--------------PGIVLVVSPLIALMENQVIG 97 (545)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~il~g~-d~lv~apTGsGKTl~~~lp~l~~--------------~~~~lVi~P~~aL~~qq~~~ 97 (545)
.+|..+|.++|..+..+.+.+. +++++||||+|||..+++-++.. +..++++.|+.+|++.++..
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 4688999999999999999875 89999999999999999888852 35799999999999999996
Q ss_pred HHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccc---cChhhHHHHHhhhccCCccEEEEeccccc
Q 009048 98 LKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT---ATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (545)
Q Consensus 98 l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~---~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (545)
+.+ +||.+....+.......+. ...+++++|||.. ...+--.... ..++++||||.|.+
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~qi---------eeTqVIV~TPEK~DiITRk~gdraY~-----qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKEQI---------EETQVIVTTPEKWDIITRKSGDRAYE-----QLVRLLIIDEIHLL 449 (1674)
T ss_pred HHhhccccCcEEEEecccccchhhhh---------hcceeEEeccchhhhhhcccCchhHH-----HHHHHHhhhhhhhc
Confidence 654 7899888877655433221 1368999999943 2221111111 12678999999998
Q ss_pred cc-cCCCCHHHHHHH-HHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEe--ccCCCCcceeeeecccc--hhh
Q 009048 171 SS-WGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDL--LDD 244 (545)
Q Consensus 171 ~~-~g~~fr~~~~~l-~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~ni~~~v~~~~~--~~~ 244 (545)
-+ .|.-......+. .+......++.+++||||+|.- .|+..+|+...+-++. .++....+.+++.-... ...
T Consensus 450 hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred ccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 43 453222111111 1111223478899999999886 4667777666544332 24443345544442211 111
Q ss_pred HHHH-----HHHHHHhCCCccEEEEecchhhHHHHHHHHHh-------------------------------------CC
Q 009048 245 AYAD-----LCSVLKANGDTCAIVYCLERTTCDELSAYLSA-------------------------------------GG 282 (545)
Q Consensus 245 ~~~~-----l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~-------------------------------------~g 282 (545)
.++. ..+.++..+..++|||+.+|+++-+.|+.++. ..
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 1221 23344556678999999999999888887772 12
Q ss_pred CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEE----EeCC------CCCHHHHHHHHhhccCC
Q 009048 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFNI------PKSMEAFYQESGRAGRD 352 (545)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI----~~~~------p~s~~~y~Qr~GRagR~ 352 (545)
+..+++|+||+..+|..+.+.|..|+++|+|+|-.+++|||+|.-.++| .|++ +-|+-+-+|++|||||.
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 3568999999999999999999999999999999999999999766665 3443 34899999999999997
Q ss_pred CC--CCeEEEEeccccHHHHHHHHHhc
Q 009048 353 QL--PSKSLLYYGMDDRRRMEFILSKN 377 (545)
Q Consensus 353 g~--~~~~i~~~~~~d~~~~~~i~~~~ 377 (545)
+- .|..++..+.++.+....++.+.
T Consensus 688 ~~D~~gegiiit~~se~qyyls~mn~q 714 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQYYLSLMNQQ 714 (1674)
T ss_pred ccCcCCceeeccCchHhhhhHHhhhhc
Confidence 64 56788888877777666555543
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=1.5e-25 Score=250.24 Aligned_cols=311 Identities=14% Similarity=0.103 Sum_probs=195.0
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---C--CCeEEEEcChHHHHHHHHHHHHH-----cC-
Q 009048 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKE-----KG- 102 (545)
Q Consensus 34 fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~--~~~~lVi~P~~aL~~qq~~~l~~-----~g- 102 (545)
|+..++||.|..+......+.-+++.+|||+|||.+++..+.. . ...+++..||++++++.++++++ ++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445799999988655444567899999999999998776542 2 35799999999999999999874 22
Q ss_pred CceeEecccccHHHH-HHHH-----------------HhhhcC---CCCccEEEECcccccChhhHHH--HHhhhccCCc
Q 009048 103 IAGEFLSSTQTMQVK-TKIY-----------------EDLDSG---KPSLRLLYVTPELTATPGFMSK--LKKIHSRGLL 159 (545)
Q Consensus 103 i~~~~~~~~~~~~~~-~~~~-----------------~~~~~~---~~~~~il~~tpe~~~t~~~~~~--l~~~~~~~~l 159 (545)
..+...++....... .... ..+..+ ..-..++++|.+.+....+..+ ..+...+ .-
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L-a~ 440 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL-GR 440 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh-cc
Confidence 234444443321110 0000 001101 0113566666664432111100 0000000 13
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCC--------CCeEEec------
Q 009048 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ--------NPLVLKS------ 225 (545)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~--------~~~~~~~------ 225 (545)
++|||||+|.+..+. ...+..+.++... .+.++|+||||++...+..+...++.. .|.+...
T Consensus 441 svvIiDEVHAyD~ym---~~lL~~~L~~l~~-~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 441 SVLIVDEVHAYDAYM---YGLLEAVLKAQAQ-AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred CeEEEechhhCCHHH---HHHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 589999999974421 1122223223222 368899999999999888877765432 1111000
Q ss_pred ----cCC----CCcceeeeecc--c---chhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCC---CcEEEec
Q 009048 226 ----SFN----RPNLFYEVRYK--D---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---ISCAAYH 289 (545)
Q Consensus 226 ----~~~----r~ni~~~v~~~--~---~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g---~~~~~~h 289 (545)
... .......+... . .....+..+.+.+. .+++++|||||++.++++++.|++.+ ..+..+|
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~--~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llH 594 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN--AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFH 594 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEe
Confidence 000 00011111111 1 11223333333332 45689999999999999999999764 6799999
Q ss_pred CCCCHHHH----HHHHHHH-HcCC---CcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCC
Q 009048 290 AGLNDKAR----SSVLDDW-ISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (545)
Q Consensus 290 ~~l~~~~R----~~~~~~f-~~g~---~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 354 (545)
|.++..+| .++++.| ++|+ ..|||||+++++|||+ +++++|....| ++.++||+||+||.+.
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999999 4567778 5665 4799999999999999 68999998877 7899999999999875
No 89
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.4e-24 Score=237.83 Aligned_cols=325 Identities=20% Similarity=0.180 Sum_probs=236.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH--
Q 009048 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (545)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~-- 100 (545)
+..+.++.+|+. +++.|.-..-.+..|+ |+.|+||+|||+++.+|++. .+..+-|++|+..|+.+..+.+..
T Consensus 70 vrEa~~R~lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 70 VREASKRVLGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred HHHHHHHHhCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 345666777876 7788888777776765 99999999999999999962 355677999999999998888765
Q ss_pred --cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH---hhhccCCccEEEEeccccccc---
Q 009048 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (545)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~--- 172 (545)
+|+.+.++.++.+...+...+. .+|+|+||-.++-.-+...+. .......+.++||||||.++=
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y~--------~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeA 218 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAYA--------ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEA 218 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhcC--------CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccC
Confidence 6899999998888877665532 789999998774433222221 112245588999999998741
Q ss_pred --------cCCCCHHHHHHHHHHHHhCC---------C------------------------------------------
Q 009048 173 --------WGHDFRPSYRKLSSLRNYLP---------D------------------------------------------ 193 (545)
Q Consensus 173 --------~g~~fr~~~~~l~~l~~~~~---------~------------------------------------------ 193 (545)
-...-...|..+..+...+. .
T Consensus 219 rtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~ 298 (830)
T PRK12904 219 RTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAH 298 (830)
T ss_pred CCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHH
Confidence 00011112222211111110 0
Q ss_pred -------------------------------------------------------------------cCEEEEEcCCChh
Q 009048 194 -------------------------------------------------------------------VPILALTATAAPK 206 (545)
Q Consensus 194 -------------------------------------------------------------------~~~l~lTAT~~~~ 206 (545)
.++.+||+|+...
T Consensus 299 ~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 378 (830)
T PRK12904 299 ELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTE 378 (830)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHH
Confidence 0255667776433
Q ss_pred hHHHHHHHhcCCCCeEEeccCCCCcceeeeec--ccchhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCC
Q 009048 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG 282 (545)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g 282 (545)
..++...+++ .++..+.++|.+...... .....+++..+.+.+.. ..+.|+||||+|++.++.++..|.+.|
T Consensus 379 -~~E~~~iY~l---~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~g 454 (830)
T PRK12904 379 -AEEFREIYNL---DVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAG 454 (830)
T ss_pred -HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 2334444333 345556677766544221 12235677888877755 567799999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCC-----------------------------------
Q 009048 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV----------------------------------- 327 (545)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v----------------------------------- 327 (545)
+++..+||. +.+|...+..|..+...|+|||+++|||+|++=-
T Consensus 455 i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 532 (830)
T PRK12904 455 IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLE 532 (830)
T ss_pred CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHH
Confidence 999999995 7889999999999999999999999999998632
Q ss_pred ---cEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccH
Q 009048 328 ---RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (545)
Q Consensus 328 ---~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~ 367 (545)
=+||....|.|-.---|-.||+||.|.||.+..|++.+|.
T Consensus 533 ~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 533 AGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred cCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2789999999999999999999999999999999998874
No 90
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=1.5e-24 Score=248.72 Aligned_cols=319 Identities=19% Similarity=0.220 Sum_probs=195.1
Q ss_pred CCCHHHHHHHHHHH----cC-CCEEEEcCCCchHHHHHH--HHHhc---CCCeEEEEcChHHHHHHHHHHHHHcCCcee-
Q 009048 38 QFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQ--IPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGE- 106 (545)
Q Consensus 38 ~~r~~Q~~~i~~il----~g-~d~lv~apTGsGKTl~~~--lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~- 106 (545)
.+|++|.+||.++. .| +.++++||||||||.+.+ +-.+. ..+++|+|+|+++|..|....++.++....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~ 492 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQ 492 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccccc
Confidence 48999999998876 33 579999999999997643 22222 246899999999999999999998765432
Q ss_pred EecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHH-HhhhccCCccEEEEecccccccc---------C-C
Q 009048 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSW---------G-H 175 (545)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l-~~~~~~~~l~~iViDEaH~i~~~---------g-~ 175 (545)
.+.+..... ...... ...+.+|+++|...+....+...- ......+.+++|||||||+.... + .
T Consensus 493 ~~~~i~~i~---~L~~~~--~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 493 TFASIYDIK---GLEDKF--PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred chhhhhchh---hhhhhc--ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 111100000 000111 122467888777654322111000 01123456889999999995310 0 1
Q ss_pred CCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHH------------HHHHhcCC---CCeEEeccCCCCcceeee----
Q 009048 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD------------VMESLCLQ---NPLVLKSSFNRPNLFYEV---- 236 (545)
Q Consensus 176 ~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~------------i~~~l~~~---~~~~~~~~~~r~ni~~~v---- 236 (545)
++...|.....+...+ +...|+|||||......- .+..-.+. .|..+...+....+.+.-
T Consensus 568 ~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYF-DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhhhHHHHHHHHHhhc-CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 1112244445555543 567899999997543210 00000010 122222211111111100
Q ss_pred ----------ecccchh--------------------hHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC-----
Q 009048 237 ----------RYKDLLD--------------------DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----- 281 (545)
Q Consensus 237 ----------~~~~~~~--------------------~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~----- 281 (545)
......+ .....+.+.+....++++||||.++++|+.+++.|.+.
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 0000000 01122333333344578999999999999999887753
Q ss_pred -CC---cEEEecCCCCHHHHHHHHHHHHcCCC-cEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCC--
Q 009048 282 -GI---SCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL-- 354 (545)
Q Consensus 282 -g~---~~~~~h~~l~~~~R~~~~~~f~~g~~-~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~-- 354 (545)
++ .+..+||+.+ ++..++++|+++.. .|+|+++++.+|+|+|.|..||.+.++.|...|.|++||+.|--.
T Consensus 727 ~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~ 804 (1123)
T PRK11448 727 GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEI 804 (1123)
T ss_pred CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccC
Confidence 22 4567888875 46789999999887 589999999999999999999999999999999999999999643
Q ss_pred CCeEEEEecc
Q 009048 355 PSKSLLYYGM 364 (545)
Q Consensus 355 ~~~~i~~~~~ 364 (545)
.....++++.
T Consensus 805 ~K~~f~I~D~ 814 (1123)
T PRK11448 805 GKTHFRIFDA 814 (1123)
T ss_pred CCceEEEEeh
Confidence 2344455543
No 91
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.94 E-value=4.7e-26 Score=224.60 Aligned_cols=268 Identities=17% Similarity=0.241 Sum_probs=172.6
Q ss_pred eEEEEcChHHHHHHHHHHHHHcCCce-----e--EecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh
Q 009048 80 IVLVVSPLIALMENQVIGLKEKGIAG-----E--FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152 (545)
Q Consensus 80 ~~lVi~P~~aL~~qq~~~l~~~gi~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~ 152 (545)
.++|+-|.++|++|...+++++.... . .+.++.. .......+.. ...|+++||- ++..+.+
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~---~r~Q~~ql~~---g~~ivvGtpg------Rl~~~is 355 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVL---KRTQCKQLKD---GTHIVVGTPG------RLLQPIS 355 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHH---hHHHHHHhhc---CceeeecCch------hhhhhhh
Confidence 48999999999999888776642211 0 1111111 1111111222 2556555554 3333322
Q ss_pred --hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-------CcCEEEEEcCCChhhHHHHHHH-hc------
Q 009048 153 --IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-------DVPILALTATAAPKVQKDVMES-LC------ 216 (545)
Q Consensus 153 --~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------~~~~l~lTAT~~~~~~~~i~~~-l~------ 216 (545)
.......+++|+|||+.++.-|.+ ..|.++....| ..+++.+|||+..-....+-+. +.
T Consensus 356 ~g~~~lt~crFlvlDead~lL~qgy~-----d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVd 430 (725)
T KOG0349|consen 356 KGLVTLTHCRFLVLDEADLLLGQGYD-----DKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVD 430 (725)
T ss_pred ccceeeeeeEEEEecchhhhhhcccH-----HHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEe
Confidence 223344789999999999887754 34444444444 4578999999764322222111 11
Q ss_pred CCCCeE-----------EeccC-----------------CCCcceeeeecccchhhHHHH-----HHHHHHhCCCccEEE
Q 009048 217 LQNPLV-----------LKSSF-----------------NRPNLFYEVRYKDLLDDAYAD-----LCSVLKANGDTCAIV 263 (545)
Q Consensus 217 ~~~~~~-----------~~~~~-----------------~r~ni~~~v~~~~~~~~~~~~-----l~~~l~~~~~~~~II 263 (545)
++.... +..+. .+.|+.-.-............ -...++.+...+.||
T Consensus 431 LkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaii 510 (725)
T KOG0349|consen 431 LKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAII 510 (725)
T ss_pred cccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEE
Confidence 111000 00000 011111100001111111111 122334555668999
Q ss_pred EecchhhHHHHHHHHHhCC---CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHH
Q 009048 264 YCLERTTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSME 340 (545)
Q Consensus 264 f~~t~~~~~~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~ 340 (545)
||+|+..|+.|..++.+.| ++|..+||+..+.+|.+.++.|+.+.++.||||+++++|+|+..+-++|+..+|....
T Consensus 511 fcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~ 590 (725)
T KOG0349|consen 511 FCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKT 590 (725)
T ss_pred EEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccc
Confidence 9999999999999999874 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCeEEEEecc
Q 009048 341 AFYQESGRAGRDQLPSKSLLYYGM 364 (545)
Q Consensus 341 ~y~Qr~GRagR~g~~~~~i~~~~~ 364 (545)
.|+||+||.||+.+-|.++.++..
T Consensus 591 nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 591 NYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred hhhhhhhccchhhhcceeEEEeec
Confidence 999999999999999999988753
No 92
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=5.8e-25 Score=234.68 Aligned_cols=324 Identities=22% Similarity=0.267 Sum_probs=221.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh--c-CCCeEEEEcChHHHHHHHHHHHHHcC
Q 009048 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--A-KPGIVLVVSPLIALMENQVIGLKEKG 102 (545)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l--~-~~~~~lVi~P~~aL~~qq~~~l~~~g 102 (545)
+...+...|+|. +-++|++||-++..|..++|.|+|.+|||+++-.++. + ...++++-+|.+||-+|.++.++..-
T Consensus 286 lVpe~a~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 286 LVPEMALIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred hchhHHhhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhc
Confidence 333444457776 7889999999999999999999999999988654433 2 35689999999999999999998732
Q ss_pred CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc--cCCCCHHH
Q 009048 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPS 180 (545)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~--~g~~fr~~ 180 (545)
-.+..+.+.. .-+|+...+++|.|++.+.-. ....-...+.+||+||+|-+.+ .|
T Consensus 365 ~DvgLlTGDv-------------qinPeAsCLIMTTEILRsMLY----rgadliRDvE~VIFDEVHYiND~eRG------ 421 (1248)
T KOG0947|consen 365 GDVGLLTGDV-------------QINPEASCLIMTTEILRSMLY----RGADLIRDVEFVIFDEVHYINDVERG------ 421 (1248)
T ss_pred cccceeecce-------------eeCCCcceEeehHHHHHHHHh----cccchhhccceEEEeeeeeccccccc------
Confidence 2222333221 234668899999998765321 1111123388999999999876 33
Q ss_pred HHHHHHHHHhCC-CcCEEEEEcCCChhhH-HHHHHHhcCCCCeEEeccCCCCcce--eeeecc-----------------
Q 009048 181 YRKLSSLRNYLP-DVPILALTATAAPKVQ-KDVMESLCLQNPLVLKSSFNRPNLF--YEVRYK----------------- 239 (545)
Q Consensus 181 ~~~l~~l~~~~~-~~~~l~lTAT~~~~~~-~~i~~~l~~~~~~~~~~~~~r~ni~--~~v~~~----------------- 239 (545)
--+.++.-.+| ++.+|+||||.+.... .+++....-+.-.++ ....||--. |.+..+
T Consensus 422 -vVWEEViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyVi-ST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~ 499 (1248)
T KOG0947|consen 422 -VVWEEVIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVI-STSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGI 499 (1248)
T ss_pred -ccceeeeeeccccceEEEEeccCCChHHHHHHhhhccCceEEEE-ecCCCccceEEEEEeccceehhhcccchhhhhcc
Confidence 23344555566 7899999999987642 233322222211122 121222100 000000
Q ss_pred -c-----------------------------------ch----------h---hHHHHHHHHHHhCCCccEEEEecchhh
Q 009048 240 -D-----------------------------------LL----------D---DAYADLCSVLKANGDTCAIVYCLERTT 270 (545)
Q Consensus 240 -~-----------------------------------~~----------~---~~~~~l~~~l~~~~~~~~IIf~~t~~~ 270 (545)
+ .. . ..+-.+...++...--|+||||-+++.
T Consensus 500 ~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkr 579 (1248)
T KOG0947|consen 500 KDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKR 579 (1248)
T ss_pred hhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEcccc
Confidence 0 00 0 124455556655555689999999999
Q ss_pred HHHHHHHHHhCCC---------------------------------------cEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 009048 271 CDELSAYLSAGGI---------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQV 311 (545)
Q Consensus 271 ~~~l~~~L~~~g~---------------------------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (545)
|++.+..|....+ .++.+|||+=+-.+.-+...|..|-++|
T Consensus 580 Cde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKV 659 (1248)
T KOG0947|consen 580 CDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKV 659 (1248)
T ss_pred HHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEE
Confidence 9999999875322 3588999999999999999999999999
Q ss_pred EEeccccccccccCCCcEEEEeCCCC---------CHHHHHHHHhhccCCCCC--CeEEEEecc--ccHHHHHHHHHh
Q 009048 312 VVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRDQLP--SKSLLYYGM--DDRRRMEFILSK 376 (545)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p~---------s~~~y~Qr~GRagR~g~~--~~~i~~~~~--~d~~~~~~i~~~ 376 (545)
|+||..|+||||.| .|.||.-.+.+ .+-+|+|++|||||.|.. |.++++... .+...++.++-.
T Consensus 660 LFATETFAMGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G 736 (1248)
T KOG0947|consen 660 LFATETFAMGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMG 736 (1248)
T ss_pred EeehhhhhhhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcC
Confidence 99999999999999 56666655544 688999999999999975 555555433 245556555543
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3.5e-24 Score=234.80 Aligned_cols=323 Identities=20% Similarity=0.162 Sum_probs=220.1
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH----
Q 009048 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (545)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~---- 100 (545)
.+-++.+|.. +++.|.-.--.+..|+ |+.|+||+|||++|.+|++. .+..++||+|+..|+.|..+.+..
T Consensus 73 Ea~~R~lg~~-~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 73 EVSLRTLGLR-HFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred HHHHHHcCCC-cchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 4555667765 5667766655555555 99999999999999999984 456699999999999998888776
Q ss_pred cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH---hhhccCCccEEEEeccccccc-----
Q 009048 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS----- 172 (545)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~----- 172 (545)
+|+.+.++.++.....+...+ ..+|+|+||-.++-.-+...+. ...-...+.++||||||.++=
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y--------~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArt 221 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAY--------KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEART 221 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHh--------CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCC
Confidence 588888888887776654433 3689999998763222211110 001124589999999998741
Q ss_pred ------cCCCCHHHHHHHHHHHHhCC---------------CcCEEEEEc------------------------------
Q 009048 173 ------WGHDFRPSYRKLSSLRNYLP---------------DVPILALTA------------------------------ 201 (545)
Q Consensus 173 ------~g~~fr~~~~~l~~l~~~~~---------------~~~~l~lTA------------------------------ 201 (545)
-...-...|..+..+...+. ....+.||-
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~ 301 (896)
T PRK13104 222 PLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301 (896)
T ss_pred ceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhH
Confidence 11112233433332222211 112233333
Q ss_pred --------------------------------------------------------------------------------
Q 009048 202 -------------------------------------------------------------------------------- 201 (545)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (545)
T Consensus 302 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~k 381 (896)
T PRK13104 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNK 381 (896)
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcch
Confidence
Q ss_pred ------CCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeec--ccchhhHHHHHHHHHHh--CCCccEEEEecchhhH
Q 009048 202 ------TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTC 271 (545)
Q Consensus 202 ------T~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~ 271 (545)
|+... ..++...++ -.++..+.++|.+...... .....+++..+.+.+.. ..+.|+||||+|++.+
T Consensus 382 LsGMTGTa~te-~~Ef~~iY~---l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~s 457 (896)
T PRK13104 382 LSGMTGTADTE-AYEFQQIYN---LEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEAS 457 (896)
T ss_pred hccCCCCChhH-HHHHHHHhC---CCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 22111 011111111 1122233344433222111 11224566666655532 3577999999999999
Q ss_pred HHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCC-------------------------
Q 009048 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD------------------------- 326 (545)
Q Consensus 272 ~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~------------------------- 326 (545)
+.++..|.+.|++...+||++.+.+|..+.+.|+.|. |+|||+++|+|+|+.=
T Consensus 458 E~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~ 535 (896)
T PRK13104 458 EFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKK 535 (896)
T ss_pred HHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999999999999999995 9999999999999861
Q ss_pred --------C-----cEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccH
Q 009048 327 --------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (545)
Q Consensus 327 --------v-----~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~ 367 (545)
| =+||-...+.|-.-=-|-.|||||.|.||.+..|++.+|.
T Consensus 536 ~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 536 EWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1 2788888899999999999999999999999999998874
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.5e-24 Score=240.16 Aligned_cols=309 Identities=24% Similarity=0.250 Sum_probs=210.9
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHH---HHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEe
Q 009048 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (545)
Q Consensus 32 ~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~ 108 (545)
..+||+ +-++|++++.++..|..|+|+||||+|||++... -++..+.++++.+|.+||-+|.++.|...-...
T Consensus 114 ~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv--- 189 (1041)
T COG4581 114 REYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV--- 189 (1041)
T ss_pred HhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh---
Confidence 447887 8999999999999999999999999999987543 345567789999999999999999988732221
Q ss_pred cccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009048 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (545)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (545)
.....+..+-..-+++..++++|.|++.+.... .......+..||+||+|+|.+.. |. .-+....
T Consensus 190 ------~~~vGL~TGDv~IN~~A~clvMTTEILRnMlyr----g~~~~~~i~~ViFDEvHyi~D~e---RG--~VWEE~I 254 (1041)
T COG4581 190 ------ADMVGLMTGDVSINPDAPCLVMTTEILRNMLYR----GSESLRDIEWVVFDEVHYIGDRE---RG--VVWEEVI 254 (1041)
T ss_pred ------hhhccceecceeeCCCCceEEeeHHHHHHHhcc----CcccccccceEEEEeeeeccccc---cc--hhHHHHH
Confidence 000001111122345577788887877654322 22334558999999999998742 33 3344455
Q ss_pred HhCC-CcCEEEEEcCCChhhH-HHHHHHhcCCCCeEEeccCCCCcc-eeeeecc----------cc-hhhH---------
Q 009048 189 NYLP-DVPILALTATAAPKVQ-KDVMESLCLQNPLVLKSSFNRPNL-FYEVRYK----------DL-LDDA--------- 245 (545)
Q Consensus 189 ~~~~-~~~~l~lTAT~~~~~~-~~i~~~l~~~~~~~~~~~~~r~ni-~~~v~~~----------~~-~~~~--------- 245 (545)
-.+| ++++++||||.+.... ..++.... ..|..+..+..||.- ...+... .. ....
T Consensus 255 i~lP~~v~~v~LSATv~N~~EF~~Wi~~~~-~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 255 ILLPDHVRFVFLSATVPNAEEFAEWIQRVH-SQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred HhcCCCCcEEEEeCCCCCHHHHHHHHHhcc-CCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 6666 5799999999987643 23333333 444444444444421 1111100 00 0000
Q ss_pred ---------------------------------HHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHh------------
Q 009048 246 ---------------------------------YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA------------ 280 (545)
Q Consensus 246 ---------------------------------~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~------------ 280 (545)
.-.+...+.....-++|+|+-+++.|+..+..+..
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~ 413 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERA 413 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHH
Confidence 01123333333445799999999999998877662
Q ss_pred ----------------CCC-------------cEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEE
Q 009048 281 ----------------GGI-------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331 (545)
Q Consensus 281 ----------------~g~-------------~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI 331 (545)
+++ ..+.+|+||=+..|..+...|..|-++|++||.+|++|+|.| .+.|+
T Consensus 414 i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-artvv 492 (1041)
T COG4581 414 IREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-ARTVV 492 (1041)
T ss_pred HHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-cccee
Confidence 111 235899999999999999999999999999999999999999 66666
Q ss_pred EeCCC---------CCHHHHHHHHhhccCCCCC--CeEEEE
Q 009048 332 HFNIP---------KSMEAFYQESGRAGRDQLP--SKSLLY 361 (545)
Q Consensus 332 ~~~~p---------~s~~~y~Qr~GRagR~g~~--~~~i~~ 361 (545)
...+. -+..+|.|..|||||.|.. |.+++.
T Consensus 493 ~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 493 FTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred eeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEe
Confidence 55543 3899999999999999975 555555
No 95
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=5.6e-24 Score=228.87 Aligned_cols=337 Identities=18% Similarity=0.271 Sum_probs=229.3
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHH--HHHHcCCCEEEEcCCCchHHHHHHHHHh----cCCCeEEEEcChHHHHHHHHHH
Q 009048 24 EALVKLLRWHFGHAQFRDKQLDAI--QAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIG 97 (545)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i--~~il~g~d~lv~apTGsGKTl~~~lp~l----~~~~~~lVi~P~~aL~~qq~~~ 97 (545)
+.......+.+|...+..||.+++ +.++.+++.+..+||++|||++.-+-++ .+...++.+.|..+.+++....
T Consensus 209 ~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~ 288 (1008)
T KOG0950|consen 209 TKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISA 288 (1008)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhh
Confidence 444444555679999999999987 6688899999999999999999877665 4578899999999999999988
Q ss_pred HHHcCCcee----EecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccccc
Q 009048 98 LKEKGIAGE----FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (545)
Q Consensus 98 l~~~gi~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (545)
+..+.++.. ...+..+... ......+.++|-|+..+ ..+.+.+......+++|||||.|.+.+-
T Consensus 289 l~~~~~~~G~~ve~y~g~~~p~~----------~~k~~sv~i~tiEkans--lin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 289 LSPFSIDLGFPVEEYAGRFPPEK----------RRKRESVAIATIEKANS--LINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hhhhccccCCcchhhcccCCCCC----------cccceeeeeeehHhhHh--HHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 887544433 3222211111 11235677777776654 4555666666677999999999999886
Q ss_pred CCCCHHHHHHHHHHHHhCC--CcCEEEEEcCCChhhHHHHHHHhcC----C--CCeEEeccCCCCcceeeeecccchhhH
Q 009048 174 GHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCL----Q--NPLVLKSSFNRPNLFYEVRYKDLLDDA 245 (545)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~--~~~~l~lTAT~~~~~~~~i~~~l~~----~--~~~~~~~~~~r~ni~~~v~~~~~~~~~ 245 (545)
|.+.--. .-+.+++-... .+++|+||||++... ++..++.- . .|+.+..........|... ....
T Consensus 357 ~rg~~lE-~~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~----r~~~ 429 (1008)
T KOG0950|consen 357 GRGAILE-LLLAKILYENLETSVQIIGMSATIPNNS--LLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS----RNKV 429 (1008)
T ss_pred ccchHHH-HHHHHHHHhccccceeEeeeecccCChH--HHHHHhhhhheecccCcccchhccCCCcccccch----hhHH
Confidence 6432111 11222222222 356999999998752 23333321 0 1222211111122222221 0111
Q ss_pred HHHHH----------------HHHHh-C-CCccEEEEecchhhHHHHHHHHHhC--------------------------
Q 009048 246 YADLC----------------SVLKA-N-GDTCAIVYCLERTTCDELSAYLSAG-------------------------- 281 (545)
Q Consensus 246 ~~~l~----------------~~l~~-~-~~~~~IIf~~t~~~~~~l~~~L~~~-------------------------- 281 (545)
...+. .+..+ . .+.++||||++++.|+.+|..+...
T Consensus 430 lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950|consen 430 LREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred HHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcC
Confidence 11111 11111 1 2335999999999999998665430
Q ss_pred ------------CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeC----CCCCHHHHHHH
Q 009048 282 ------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN----IPKSMEAFYQE 345 (545)
Q Consensus 282 ------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~----~p~s~~~y~Qr 345 (545)
...++++|+|++.++|..+...|++|.+.|++||+.+..|++.|..|++|-.- .+.+..+|.|+
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM 589 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQM 589 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhh
Confidence 12468899999999999999999999999999999999999999888888543 23478999999
Q ss_pred HhhccCCCC--CCeEEEEeccccHHHHHHHHHhccc
Q 009048 346 SGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKNQS 379 (545)
Q Consensus 346 ~GRagR~g~--~~~~i~~~~~~d~~~~~~i~~~~~~ 379 (545)
+|||||.|- .|.+++++...+..++..++.....
T Consensus 590 ~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~ 625 (1008)
T KOG0950|consen 590 VGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLK 625 (1008)
T ss_pred hhhhhhcccccCcceEEEeeccchhHHHHHHhcccc
Confidence 999999985 6789999999999888877775543
No 96
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.91 E-value=2.1e-22 Score=227.22 Aligned_cols=308 Identities=18% Similarity=0.178 Sum_probs=212.4
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHH--HHHhc----CCCeEEEEcChHHHHHHHHHHHHHcC--Cce
Q 009048 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQ--IPALA----KPGIVLVVSPLIALMENQVIGLKEKG--IAG 105 (545)
Q Consensus 38 ~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~--lp~l~----~~~~~lVi~P~~aL~~qq~~~l~~~g--i~~ 105 (545)
+++++|.+++..+. .|..+|+.-..|.|||+..+ +..+. ..+++|||+|. +|+.+|.+.+.++. +.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 68999999998775 57789999999999998543 22222 24679999997 55678999998853 333
Q ss_pred eEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH
Q 009048 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (545)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (545)
..+++.. ..+........ ....++++++|++++.... ..+ ....+++|||||||++.... ..+.
T Consensus 248 ~~~~G~~--~eR~~~~~~~~-~~~~~dVvITSYe~l~~e~--~~L----~k~~W~~VIvDEAHrIKN~~-------Skls 311 (1033)
T PLN03142 248 VKFHGNP--EERAHQREELL-VAGKFDVCVTSFEMAIKEK--TAL----KRFSWRYIIIDEAHRIKNEN-------SLLS 311 (1033)
T ss_pred EEEeCCH--HHHHHHHHHHh-cccCCCcceecHHHHHHHH--HHh----ccCCCCEEEEcCccccCCHH-------HHHH
Confidence 3333322 22222222211 1224788889888765421 112 22348899999999987632 3344
Q ss_pred HHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc---------------------------------------
Q 009048 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--------------------------------------- 226 (545)
Q Consensus 186 ~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~--------------------------------------- 226 (545)
.....+.....++||||+-.+...+++..+.+-.|.++...
T Consensus 312 kalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~ 391 (1033)
T PLN03142 312 KTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVE 391 (1033)
T ss_pred HHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 44455556667999999998888888887776655433210
Q ss_pred CCCCcceeeeecccch--------------------------------------------------------------hh
Q 009048 227 FNRPNLFYEVRYKDLL--------------------------------------------------------------DD 244 (545)
Q Consensus 227 ~~r~ni~~~v~~~~~~--------------------------------------------------------------~~ 244 (545)
...|.....+...... ..
T Consensus 392 ~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~Sg 471 (1033)
T PLN03142 392 KGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSG 471 (1033)
T ss_pred hhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhh
Confidence 0001100000000000 01
Q ss_pred HHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC---CCcEEEeccccc
Q 009048 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATVAFG 319 (545)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~VLVaT~a~~ 319 (545)
++..|..++.. ..+.++|||+......+.|...|...|+....+||+++..+|..+++.|... ...+|++|.+.|
T Consensus 472 Kl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 472 KMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred HHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 11112222221 2356899999999999999999999999999999999999999999999753 345789999999
Q ss_pred cccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEe
Q 009048 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (545)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~ 362 (545)
.|||+...++||+||+|+++....|++||+.|.|+...+.+|.
T Consensus 552 lGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 552 LGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred cCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 9999999999999999999999999999999999987766553
No 97
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=4.2e-24 Score=223.11 Aligned_cols=319 Identities=19% Similarity=0.240 Sum_probs=211.9
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHH-hcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecc
Q 009048 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (545)
Q Consensus 34 fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~--lp~-l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~ 110 (545)
|.|. +-|+|..+|..+-++..++|.|-|.+|||.++- ++. +....++|+-+|.+||-+|.++.|..---.+..-.+
T Consensus 126 YPF~-LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTG 204 (1041)
T KOG0948|consen 126 YPFT-LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTG 204 (1041)
T ss_pred CCcc-cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeec
Confidence 4554 779999999999999999999999999998754 433 345789999999999999999998762122222222
Q ss_pred cccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHh
Q 009048 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (545)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~ 190 (545)
.. .-.|+..-|++|.|++.+.-. ....-.+.+.+||+||+|-|-+.... --+.+-.-.
T Consensus 205 DV-------------TInP~ASCLVMTTEILRsMLY----RGSEvmrEVaWVIFDEIHYMRDkERG-----VVWEETIIl 262 (1041)
T KOG0948|consen 205 DV-------------TINPDASCLVMTTEILRSMLY----RGSEVMREVAWVIFDEIHYMRDKERG-----VVWEETIIL 262 (1041)
T ss_pred ce-------------eeCCCCceeeeHHHHHHHHHh----ccchHhheeeeEEeeeehhccccccc-----eeeeeeEEe
Confidence 11 123556778888887754221 11112344889999999988652100 111112222
Q ss_pred CC-CcCEEEEEcCCChhhH-HHHHHHhcCCCCeEEeccCCCCcc------------eeeeeccc-chhhHHH--------
Q 009048 191 LP-DVPILALTATAAPKVQ-KDVMESLCLQNPLVLKSSFNRPNL------------FYEVRYKD-LLDDAYA-------- 247 (545)
Q Consensus 191 ~~-~~~~l~lTAT~~~~~~-~~i~~~l~~~~~~~~~~~~~r~ni------------~~~v~~~~-~~~~~~~-------- 247 (545)
+| +++.++||||+|.... .+++..+.-+...++-+.+....+ +..+..+. ..++.+.
T Consensus 263 lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~ 342 (1041)
T KOG0948|consen 263 LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRK 342 (1041)
T ss_pred ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhc
Confidence 34 7899999999987643 344455554444443333221111 11111110 1111111
Q ss_pred ------------------------------HHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCC--------------
Q 009048 248 ------------------------------DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI-------------- 283 (545)
Q Consensus 248 ------------------------------~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~-------------- 283 (545)
.+...+-.....|+|||+-++++|+.+|-.+.+..+
T Consensus 343 ~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~ 422 (1041)
T KOG0948|consen 343 AGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFN 422 (1041)
T ss_pred cCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHH
Confidence 222222233445899999999999999988876432
Q ss_pred -------------------------cEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCC-
Q 009048 284 -------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK- 337 (545)
Q Consensus 284 -------------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~- 337 (545)
.+..+|+|+-+--+..+.=.|.+|-+++|+||..|++|+|.| .+.|+....-+
T Consensus 423 nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMP-AkTVvFT~~rKf 501 (1041)
T KOG0948|consen 423 NAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMP-AKTVVFTAVRKF 501 (1041)
T ss_pred HHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCc-ceeEEEeecccc
Confidence 347899999999999999999999999999999999999999 56666544332
Q ss_pred --------CHHHHHHHHhhccCCCC--CCeEEEEeccc-cHHHHHHHHHh
Q 009048 338 --------SMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILSK 376 (545)
Q Consensus 338 --------s~~~y~Qr~GRagR~g~--~~~~i~~~~~~-d~~~~~~i~~~ 376 (545)
|.-+|+|++|||||.|. .|.|+++++.. +....+.+++.
T Consensus 502 DG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG 551 (1041)
T KOG0948|consen 502 DGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKG 551 (1041)
T ss_pred CCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcC
Confidence 67799999999999997 46677777654 44445555543
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=4.4e-22 Score=217.74 Aligned_cols=324 Identities=20% Similarity=0.148 Sum_probs=220.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH---
Q 009048 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (545)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~--- 100 (545)
..+-++.+|+. +++.|.-.--.+..|+ |+.|+||.|||++|.+|++. .+..+.||+|+..|+.+-.+.+..
T Consensus 72 rEaa~R~lgm~-~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 72 REASKRVFEMR-HFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred HHHHHHHhCCC-cCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 34556677765 6677776555555555 99999999999999999975 355699999999999987777655
Q ss_pred -cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH---hhhccCCccEEEEecccccccc---
Q 009048 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW--- 173 (545)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~~--- 173 (545)
+|+.+.++.++.....+... ...+|+|+||-.+.-.-+...+. ...-...+.++||||||.++--
T Consensus 149 ~lGlsv~~i~~~~~~~~r~~~--------Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEAr 220 (908)
T PRK13107 149 FLGLTVGINVAGLGQQEKKAA--------YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEAR 220 (908)
T ss_pred hcCCeEEEecCCCCHHHHHhc--------CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCC
Confidence 68999888777765443322 23789999998774332222211 1112345889999999987520
Q ss_pred ------C--CCCHHHHHHHHHHHHhCC--------------------CcC------------------------------
Q 009048 174 ------G--HDFRPSYRKLSSLRNYLP--------------------DVP------------------------------ 195 (545)
Q Consensus 174 ------g--~~fr~~~~~l~~l~~~~~--------------------~~~------------------------------ 195 (545)
| ..-...|..+..+...+. ...
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~ 300 (908)
T PRK13107 221 TPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYS 300 (908)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccC
Confidence 0 011122222221111110 111
Q ss_pred --------------------------------------------------------------------------------
Q 009048 196 -------------------------------------------------------------------------------- 195 (545)
Q Consensus 196 -------------------------------------------------------------------------------- 195 (545)
T Consensus 301 ~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (908)
T PRK13107 301 AANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNY 380 (908)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHH
Confidence
Q ss_pred ------EEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeec--ccchhhHHHHHHHHHHh--CCCccEEEEe
Q 009048 196 ------ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYC 265 (545)
Q Consensus 196 ------~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~ 265 (545)
+.+||+|+.... .++...+++ .++..+.++|.+...... ......++..+.+.+.. ..+.|+||||
T Consensus 381 Fr~Y~kL~GMTGTa~te~-~Ef~~iY~l---~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t 456 (908)
T PRK13107 381 FRQYEKLAGMTGTADTEA-FEFQHIYGL---DTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGT 456 (908)
T ss_pred HHhhhHhhcccCCChHHH-HHHHHHhCC---CEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 233333333221 122222221 233344445543322221 11224566666555542 3477999999
Q ss_pred cchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCC-------------------
Q 009048 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD------------------- 326 (545)
Q Consensus 266 ~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~------------------- 326 (545)
+|++.++.++..|.+.|++...+||++++.++..+.+.|+.|. |+|||+++|+|+|+.=
T Consensus 457 ~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~ 534 (908)
T PRK13107 457 VSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQK 534 (908)
T ss_pred CcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHH
Confidence 9999999999999999999999999999999999999999998 9999999999999861
Q ss_pred -------------C-----cEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccH
Q 009048 327 -------------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (545)
Q Consensus 327 -------------v-----~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~ 367 (545)
| =+||-...+.|-.-=-|-.|||||.|.||.+..|++.+|.
T Consensus 535 ~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 535 AKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 3788899999999999999999999999999999998875
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=5.5e-22 Score=191.56 Aligned_cols=285 Identities=19% Similarity=0.239 Sum_probs=191.4
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCchHH-HHHHH--HHhcCCCeEEEEcChHHHHHHHHHHHHH--cCCceeEe
Q 009048 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKS-MCYQI--PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL 108 (545)
Q Consensus 38 ~~r~~Q~~~i~~il----~g~d~lv~apTGsGKT-l~~~l--p~l~~~~~~lVi~P~~aL~~qq~~~l~~--~gi~~~~~ 108 (545)
++++.|+.+-..++ +.++.+++|-||+||| +.|+. .++..++.+.+.+|....+.+...+|+. .++....+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 68999999866554 5689999999999999 45553 4567899999999999999999999987 34666666
Q ss_pred cccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009048 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (545)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (545)
++......+ +|-+++|...+.++.+. +++++|||+|...-- .| ...+..+.+
T Consensus 177 yg~S~~~fr-------------------~plvVaTtHQLlrFk~a-----FD~liIDEVDAFP~~-~d-~~L~~Av~~-- 228 (441)
T COG4098 177 YGDSDSYFR-------------------APLVVATTHQLLRFKQA-----FDLLIIDEVDAFPFS-DD-QSLQYAVKK-- 228 (441)
T ss_pred ecCCchhcc-------------------ccEEEEehHHHHHHHhh-----ccEEEEecccccccc-CC-HHHHHHHHH--
Confidence 655433221 23355554433333322 899999999985421 11 111222222
Q ss_pred HhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCccee-eeecccchhhHH------HHHHHHHHhC--CCc
Q 009048 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY-EVRYKDLLDDAY------ADLCSVLKAN--GDT 259 (545)
Q Consensus 189 ~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~-~v~~~~~~~~~~------~~l~~~l~~~--~~~ 259 (545)
+..+.-+.|.||||++....+++... -.....+..-+++..+.. ..........++ ..|..+++.. .+.
T Consensus 229 ark~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 229 ARKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred hhcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCC
Confidence 23347789999999998877655331 111111111122111100 011111111111 2455666543 357
Q ss_pred cEEEEecchhhHHHHHHHHHhC-C-CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeC--C
Q 009048 260 CAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN--I 335 (545)
Q Consensus 260 ~~IIf~~t~~~~~~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~--~ 335 (545)
+++||+++++..+++++.|++. + ..++..|+ .+..|.+..++|++|++.+||+|.++++|+.+|+|++.+.-. .
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs--~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~ 384 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHS--EDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR 384 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeec--cCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcc
Confidence 8999999999999999999653 3 34578888 456788999999999999999999999999999999876433 2
Q ss_pred CCCHHHHHHHHhhccCCCC
Q 009048 336 PKSMEAFYQESGRAGRDQL 354 (545)
Q Consensus 336 p~s~~~y~Qr~GRagR~g~ 354 (545)
-.|-+..+|.+||+||.-.
T Consensus 385 vfTesaLVQIaGRvGRs~~ 403 (441)
T COG4098 385 VFTESALVQIAGRVGRSLE 403 (441)
T ss_pred cccHHHHHHHhhhccCCCc
Confidence 3588999999999999754
No 100
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.1e-21 Score=216.46 Aligned_cols=300 Identities=19% Similarity=0.215 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEEcChHHHHHHHHHHHHH-cCCc----eeEec
Q 009048 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-KGIA----GEFLS 109 (545)
Q Consensus 41 ~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lVi~P~~aL~~qq~~~l~~-~gi~----~~~~~ 109 (545)
....+.+.++.+++-+++.+|||+|||. ++|... ..+.+.+.-|.+--+.....++.. +|.+ +.+..
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 3455677777788889999999999997 555442 245777777998666666666554 4433 22211
Q ss_pred ccccHHHHHHHHHhhhcCCCCccEEEECcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009048 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (545)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (545)
... + ...++.++ .+.|.| ++..+.....+..+++|||||||.-+-- -||- +.-+..+.
T Consensus 131 Rfe----------~--~~s~~Tri------k~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~-tDil--Lgllk~~~ 189 (845)
T COG1643 131 RFE----------S--KVSPRTRI------KVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLN-TDIL--LGLLKDLL 189 (845)
T ss_pred Eee----------c--cCCCCcee------EEeccHHHHHHHhhCcccccCCEEEEcchhhhhHH-HHHH--HHHHHHHH
Confidence 100 0 01122444 444555 3344555666778999999999985421 1111 11233444
Q ss_pred HhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccC-CCCcceeeeecc-cc-hhhHHHHHHHHHHhCCCccEEEE
Q 009048 189 NYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-NRPNLFYEVRYK-DL-LDDAYADLCSVLKANGDTCAIVY 264 (545)
Q Consensus 189 ~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~ni~~~v~~~-~~-~~~~~~~l~~~l~~~~~~~~IIf 264 (545)
...+ +.++|.||||+..+... ..++ .-|++...+- ..-.++|.-... +. ..+.+..........+.+.+|||
T Consensus 190 ~~rr~DLKiIimSATld~~rfs---~~f~-~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvF 265 (845)
T COG1643 190 ARRRDDLKLIIMSATLDAERFS---AYFG-NAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVF 265 (845)
T ss_pred hhcCCCceEEEEecccCHHHHH---HHcC-CCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEE
Confidence 4455 69999999999877543 3332 2344333322 222333322211 11 22233333333344567789999
Q ss_pred ecchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCC---
Q 009048 265 CLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK--- 337 (545)
Q Consensus 265 ~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~--- 337 (545)
.+...+.+.+++.|.+ ..+.+.++||.|+.++...+++--..|+-+||+||++++.+|.+|+|++||.-+..+
T Consensus 266 LpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~ 345 (845)
T COG1643 266 LPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKR 345 (845)
T ss_pred CCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccc
Confidence 9999999999999997 347789999999999999887777777777999999999999999999999777533
Q ss_pred ---------------CHHHHHHHHhhccCCCCCCeEEEEeccccHH
Q 009048 338 ---------------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (545)
Q Consensus 338 ---------------s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~ 368 (545)
|-++.-||.|||||-+ +|.|+-+|+.++..
T Consensus 346 y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 346 YDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred cccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 8889999999999998 99999999986655
No 101
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.89 E-value=3.4e-21 Score=208.49 Aligned_cols=292 Identities=20% Similarity=0.270 Sum_probs=204.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCCCeEEEEcChHHHHHHHHHHHHH
Q 009048 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l---~~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
+++.+.+++..|+ .|+..|+--...++.|+.+-++||||.|||.--++.++ .+++++++|+||..|+.|.++++.+
T Consensus 69 e~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 69 EEFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHH
Confidence 4556667777787 59999999999999999999999999999965444443 3578999999999999999999998
Q ss_pred cC-----CceeE-ecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC
Q 009048 101 KG-----IAGEF-LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (545)
Q Consensus 101 ~g-----i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (545)
++ ..... .|+....+.+....+.+.++. ++|+++| ..|+..-......-++++|+||.+|.+..-+
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gd--fdIlitT------s~FL~k~~e~L~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGD--FDILITT------SQFLSKRFEELSKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCC--ccEEEEe------HHHHHhhHHHhcccCCCEEEEccHHHHHhcc
Confidence 64 22222 567778888889999998886 6665555 4444333333333559999999999886432
Q ss_pred CC---------CHH--------------HH------HHHHHHH---------HhCCCcCEEEEEcCCChhh-HHHHH-HH
Q 009048 175 HD---------FRP--------------SY------RKLSSLR---------NYLPDVPILALTATAAPKV-QKDVM-ES 214 (545)
Q Consensus 175 ~~---------fr~--------------~~------~~l~~l~---------~~~~~~~~l~lTAT~~~~~-~~~i~-~~ 214 (545)
.. |-. .+ .++.+.. .......++..|||..+.- +..++ ..
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL 299 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL 299 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH
Confidence 11 111 00 1111111 1112356788999987754 22333 33
Q ss_pred hcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecc---hhhHHHHHHHHHhCCCcEEEecCC
Q 009048 215 LCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE---RTTCDELSAYLSAGGISCAAYHAG 291 (545)
Q Consensus 215 l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t---~~~~~~l~~~L~~~g~~~~~~h~~ 291 (545)
|++.-.. ......|+.-.+... ...+.+.++++..+.+ +|||++. ++.++++++.|+..|+++..+|++
T Consensus 300 lgFevG~---~~~~LRNIvD~y~~~----~~~e~~~elvk~lG~G-gLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 300 LGFEVGS---GGEGLRNIVDIYVES----ESLEKVVELVKKLGDG-GLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred hCCccCc---cchhhhheeeeeccC----ccHHHHHHHHHHhCCC-eEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 3332111 111122333222222 4456667777777664 8999999 999999999999999999999994
Q ss_pred CCHHHHHHHHHHHHcCCCcEEEec----cccccccccCC-CcEEEEeCCCC
Q 009048 292 LNDKARSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIPK 337 (545)
Q Consensus 292 l~~~~R~~~~~~f~~g~~~VLVaT----~a~~~GiD~p~-v~~VI~~~~p~ 337 (545)
- ...++.|..|++++||.. .++-+|||+|. ++++|.++.|+
T Consensus 372 ~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 K-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred c-----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 3 567899999999999885 57899999996 79999999993
No 102
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=2.8e-21 Score=210.14 Aligned_cols=321 Identities=20% Similarity=0.220 Sum_probs=235.1
Q ss_pred CCCHHHHHHHHHHHcC----CCEEEEcCCCchHHHHHHH---HHhcCCCeEEEEcChHHHHHHHHHHHHH-cCCceeEec
Q 009048 38 QFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g----~d~lv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~~aL~~qq~~~l~~-~gi~~~~~~ 109 (545)
.+.+.|..+++.+... +..++.+.||||||.+|+= .++..++.+||++|-++|..|.+.+++. +|.++..++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 5788999999998765 5789999999999999873 4466788999999999999999999987 899999999
Q ss_pred ccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCC-CHHHHHHHHHHH
Q 009048 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD-FRPSYRKLSSLR 188 (545)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~-fr~~~~~l~~l~ 188 (545)
|+.+..++...|.....+. .+|+++|---+.+|- .++++|||||=|--+-...+ .|..-+.+.-++
T Consensus 278 S~Ls~~er~~~W~~~~~G~--~~vVIGtRSAlF~Pf-----------~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 278 SGLSPGERYRVWRRARRGE--ARVVIGTRSALFLPF-----------KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred ccCChHHHHHHHHHHhcCC--ceEEEEechhhcCch-----------hhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 9999999999999988875 889999877776653 34899999999986543222 333346788899
Q ss_pred HhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC---CCcceeeeec-cc------chhhHHHHHHHHHHhCCC
Q 009048 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRY-KD------LLDDAYADLCSVLKANGD 258 (545)
Q Consensus 189 ~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~ni~~~v~~-~~------~~~~~~~~l~~~l~~~~~ 258 (545)
....++|+|+-|||++-+...... -+......+..-+. .|++.+.-.. .. .....+..+.+.+. .+
T Consensus 345 a~~~~~pvvLgSATPSLES~~~~~--~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~--~g 420 (730)
T COG1198 345 AKKENAPVVLGSATPSLESYANAE--SGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE--RG 420 (730)
T ss_pred HHHhCCCEEEecCCCCHHHHHhhh--cCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh--cC
Confidence 999999999999999877655431 11111111111111 2333222111 11 11233444444333 35
Q ss_pred ccEEEEecch------------------------------------------------------------hhHHHHHHHH
Q 009048 259 TCAIVYCLER------------------------------------------------------------TTCDELSAYL 278 (545)
Q Consensus 259 ~~~IIf~~t~------------------------------------------------------------~~~~~l~~~L 278 (545)
+++|+|.|.| -.++++++.|
T Consensus 421 eQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL 500 (730)
T COG1198 421 EQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEEL 500 (730)
T ss_pred CeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHH
Confidence 5677777765 3457777777
Q ss_pred HhC--CCcEEEecCCCCHHH--HHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCC------------CHHHH
Q 009048 279 SAG--GISCAAYHAGLNDKA--RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAF 342 (545)
Q Consensus 279 ~~~--g~~~~~~h~~l~~~~--R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~------------s~~~y 342 (545)
.+. +.++..+.++.+... -...+..|.+|+.+|||.|+++..|.|+|+|..|...+.-. +..-+
T Consensus 501 ~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll 580 (730)
T COG1198 501 KRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLL 580 (730)
T ss_pred HHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHH
Confidence 765 667888888765533 46779999999999999999999999999999988776432 45567
Q ss_pred HHHHhhccCCCCCCeEEEEeccccHHHHHHHHH
Q 009048 343 YQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (545)
Q Consensus 343 ~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~ 375 (545)
.|-+|||||.+.+|.+++-.-..|...+..+..
T Consensus 581 ~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 581 MQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 899999999999999888765555454544443
No 103
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.4e-21 Score=212.19 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC-CcEEEecccccc
Q 009048 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGM 320 (545)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~VLVaT~a~~~ 320 (545)
.++..+.+.+.. ..+.|+||-|.|++..+.++..|.+.|++...+++.-...+-.-+-+ .|+ -.|.|||+++|+
T Consensus 552 ~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~---AG~~g~VTIATNmAGR 628 (970)
T PRK12899 552 EKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAG---AGKLGAVTVATNMAGR 628 (970)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHh---cCCCCcEEEeeccccC
Confidence 455555544432 24678999999999999999999999999888888754444333332 243 469999999999
Q ss_pred ccccCC---C-----cEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccH
Q 009048 321 GIDRKD---V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (545)
Q Consensus 321 GiD~p~---v-----~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~ 367 (545)
|.|+.= | =+||....|.|..---|-.||+||.|.||.+..|++.+|.
T Consensus 629 GTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 629 GTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred CcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 999852 2 3799999999999999999999999999999999998874
No 104
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=5.1e-21 Score=209.83 Aligned_cols=116 Identities=22% Similarity=0.343 Sum_probs=107.0
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeC--
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN-- 334 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~-- 334 (545)
.+.++||||+|++.++.+++.|.+.|+++..+||++++.+|..+++.|+.|++.|||||+.+++|+|+|++++||+++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---CCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHH
Q 009048 335 ---IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (545)
Q Consensus 335 ---~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i 373 (545)
.|.+...|+||+|||||. ..|.+++|++..+....+.+
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 799999999999999998 58999999987765544433
No 105
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.89 E-value=6.7e-22 Score=188.43 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=136.9
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc--------CCCeEEEEcChH
Q 009048 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------KPGIVLVVSPLI 88 (545)
Q Consensus 17 ~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~--------~~~~~lVi~P~~ 88 (545)
|+.+..++.+.+.|++ +|+.+|+++|.++++.+.+|+++++.+|||+|||++|++|++. .+++++|++|++
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 5677888999999998 8999999999999999999999999999999999999999873 245799999999
Q ss_pred HHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEE
Q 009048 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (545)
Q Consensus 89 aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iVi 164 (545)
+|+.|+...+..+ ++.+..+.++........... .+.+++++||+.+..... ........++++|+
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iiv~T~~~l~~~l~----~~~~~~~~l~~lIv 149 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK------RGPHIVVATPGRLLDLLE----RGKLDLSKVKYLVL 149 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc------CCCCEEEEChHHHHHHHH----cCCCChhhCCEEEE
Confidence 9999999888775 566666666665544332221 246899999886533111 11123455899999
Q ss_pred eccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHH
Q 009048 165 DEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMES 214 (545)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~ 214 (545)
||||.+.+.+ |...+..+ ...++ +.+++++|||+++.+...+...
T Consensus 150 DE~h~~~~~~--~~~~~~~~---~~~l~~~~~~~~~SAT~~~~~~~~~~~~ 195 (203)
T cd00268 150 DEADRMLDMG--FEDQIREI---LKLLPKDRQTLLFSATMPKEVRDLARKF 195 (203)
T ss_pred eChHHhhccC--hHHHHHHH---HHhCCcccEEEEEeccCCHHHHHHHHHH
Confidence 9999988655 55444443 33343 7899999999998775544443
No 106
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.89 E-value=1.1e-21 Score=205.02 Aligned_cols=298 Identities=20% Similarity=0.251 Sum_probs=206.7
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEEcChHHHHHHHHHHHHH-c----CCceeEecccc
Q 009048 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-K----GIAGEFLSSTQ 112 (545)
Q Consensus 44 ~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lVi~P~~aL~~qq~~~l~~-~----gi~~~~~~~~~ 112 (545)
.+++..+.+++-++++++||||||. |+|-+. ..|.+.+.-|.|--+.....+... + |-.+.+-...
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRF- 133 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRF- 133 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEe-
Confidence 3467777788889999999999997 666553 456677777988766555555443 2 3222221100
Q ss_pred cHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHH--HHHHHHHHh
Q 009048 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNY 190 (545)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~--~~l~~l~~~ 190 (545)
++..+ .+.+|.|+|.-++ ++.+.....+..+++||+||||.-+ ...++ --|.++.+.
T Consensus 134 ---------ed~ts--~~TrikymTDG~L-----LRE~l~Dp~LskYsvIIlDEAHERs-----l~TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 134 ---------EDSTS--KDTRIKYMTDGML-----LREILKDPLLSKYSVIILDEAHERS-----LHTDILLGLLKKILKK 192 (674)
T ss_pred ---------cccCC--CceeEEEecchHH-----HHHHhcCCccccccEEEEechhhhh-----hHHHHHHHHHHHHHhc
Confidence 11111 2466766665544 3344444556779999999999743 22222 235556666
Q ss_pred CCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCC-cceeeeec-ccchhhHHHHHHHHHHhCCCccEEEEecch
Q 009048 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRY-KDLLDDAYADLCSVLKANGDTCAIVYCLER 268 (545)
Q Consensus 191 ~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-ni~~~v~~-~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~ 268 (545)
.++.++|.+|||+..+.....+. .-|.+...+-.-| .+.|.-.+ .+..+..+..+.++....+.+-+|||....
T Consensus 193 R~~LklIimSATlda~kfS~yF~----~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGq 268 (674)
T KOG0922|consen 193 RPDLKLIIMSATLDAEKFSEYFN----NAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQ 268 (674)
T ss_pred CCCceEEEEeeeecHHHHHHHhc----CCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCH
Confidence 67889999999998765544332 2344443332222 23333222 122344455556665566777899999999
Q ss_pred hhHHHHHHHHHhC----C--C--cEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCC-----
Q 009048 269 TTCDELSAYLSAG----G--I--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI----- 335 (545)
Q Consensus 269 ~~~~~l~~~L~~~----g--~--~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~----- 335 (545)
++.+.+++.|.+. + . -+.++||.|+.++...+++.-..|..+|++||++++..|.+++|++||.-+.
T Consensus 269 eEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~ 348 (674)
T KOG0922|consen 269 EEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKK 348 (674)
T ss_pred HHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEe
Confidence 9999999999874 1 1 2478999999999999988888899999999999999999999999997664
Q ss_pred -------------CCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHH
Q 009048 336 -------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (545)
Q Consensus 336 -------------p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~ 370 (545)
|-|.++-.||.|||||.| +|.|+-+|+.++...+
T Consensus 349 y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 349 YNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDKM 395 (674)
T ss_pred eccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhhc
Confidence 448899999999999999 9999999998887544
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=2.1e-21 Score=217.15 Aligned_cols=313 Identities=21% Similarity=0.186 Sum_probs=197.7
Q ss_pred CCHHHHHHHHHHHcC---C-CEEEEcCCCchHHHHHHHHHhc-------CCCeEEEEcChHHHHHHHHHHHHHcCCceeE
Q 009048 39 FRDKQLDAIQAVLSG---R-DCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (545)
Q Consensus 39 ~r~~Q~~~i~~il~g---~-d~lv~apTGsGKTl~~~lp~l~-------~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~ 107 (545)
.++.|..++..+... . .+++.||||+|||.+.+.+++. ...+++.+.|++++++++.++++...-....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 478999999888754 4 7889999999999999888763 2568999999999999999999873221111
Q ss_pred ----ecccccHHHHHHHHH---hhhc-----CCCCccEEEECcccccC----hhhHHHHHhhhccCCccEEEEecccccc
Q 009048 108 ----LSSTQTMQVKTKIYE---DLDS-----GKPSLRLLYVTPELTAT----PGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (545)
Q Consensus 108 ----~~~~~~~~~~~~~~~---~~~~-----~~~~~~il~~tpe~~~t----~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (545)
.++............ .... ...-+.+..++|..+.. +.....+..+. .+++|+||+|.+.
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~S~vIlDE~h~~~ 351 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLL----TSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHH----hhchhhccHHhhc
Confidence 122211111100000 0000 00011222233332211 00011021122 5789999999987
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc----CCCCcceeeeecccchhhHH-
Q 009048 172 SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEVRYKDLLDDAY- 246 (545)
Q Consensus 172 ~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~----~~r~ni~~~v~~~~~~~~~~- 246 (545)
+-. .-.....+..+... -+.++|++|||+|+...+.+...++-........+ .+.+.+...... +. .+..
T Consensus 352 ~~~--~~~~l~~~i~~l~~-~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~-~~~~~ 426 (733)
T COG1203 352 DET--MLAALLALLEALAE-AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERV-DV-EDGPQ 426 (733)
T ss_pred ccc--hHHHHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccch-hh-hhhhh
Confidence 642 12222222222222 28999999999999998888777765544333222 122222111111 10 1110
Q ss_pred HHHHHHH--HhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHH----cCCCcEEEecccccc
Q 009048 247 ADLCSVL--KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI----SSRKQVVVATVAFGM 320 (545)
Q Consensus 247 ~~l~~~l--~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~----~g~~~VLVaT~a~~~ 320 (545)
..+.... .-..+.+++|.|||+..|.+++..|+..+.++..+||.+...+|.+.++.+. .+...|+|||++.+.
T Consensus 427 ~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEa 506 (733)
T COG1203 427 EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEA 506 (733)
T ss_pred HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEE
Confidence 0111111 1234678999999999999999999998878999999999999988877654 578899999999999
Q ss_pred ccccCCCcEEEEeCCCCCHHHHHHHHhhccCCC--CCCeEEEEec
Q 009048 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ--LPSKSLLYYG 363 (545)
Q Consensus 321 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g--~~~~~i~~~~ 363 (545)
|||+. .+++| .-+..+.+.+||.||++|.| ..|..+++-.
T Consensus 507 gvDid-fd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 507 GVDID-FDVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred Eeccc-cCeee--ecCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 99984 66665 33556999999999999999 5666666644
No 108
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=4.1e-20 Score=203.04 Aligned_cols=124 Identities=23% Similarity=0.267 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHhC--CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccccc
Q 009048 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (545)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~ 320 (545)
.+++..|.+.+... .+.|+||||+|++.++.++..|.+.|++...+|+ .+.+|...+..|..+...|+|||+++||
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 45777888777543 5779999999999999999999999999999998 6889999999999999999999999999
Q ss_pred ccccC---CCc-----EEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHH
Q 009048 321 GIDRK---DVR-----LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (545)
Q Consensus 321 GiD~p---~v~-----~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~ 368 (545)
|+|++ .|. +||++..|.|...|.|+.||+||.|.+|.++.|++.+|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999 554 4499999999999999999999999999999999988753
No 109
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=4.4e-19 Score=195.98 Aligned_cols=110 Identities=24% Similarity=0.354 Sum_probs=102.8
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCC-
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI- 335 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~- 335 (545)
.+.++||||+|++.++.++..|...|+++..+||++++.+|..+++.|+.|++.|+|||+.+++|+|+|++++||+++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ----CCCHHHHHHHHhhccCCCCCCeEEEEeccccH
Q 009048 336 ----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (545)
Q Consensus 336 ----p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~ 367 (545)
|.+...|+||+||+||. ..|.+++|++..+.
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~ 559 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITD 559 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCH
Confidence 78999999999999996 68999999985433
No 110
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=2e-18 Score=185.15 Aligned_cols=324 Identities=19% Similarity=0.177 Sum_probs=224.8
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH--
Q 009048 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (545)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~-- 100 (545)
+.++.++.+|+. +++.|.-..-.++.|+ ++.|.||.|||++..+|+.. .+..+-|++|+--|+.+-.+.+..
T Consensus 67 vREa~~R~lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 67 AREAAERTLGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred HHHHHHHHcCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 345667778876 7889999998888876 88999999999999998874 577899999999999988888665
Q ss_pred --cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH---hhhccCCccEEEEecccccccc--
Q 009048 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW-- 173 (545)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~~-- 173 (545)
+|+.+.++.+..+...+...+. .+|.|+|.--+.-.-+...+. ...-...+.+.||||+|.++=-
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeA 215 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYA--------CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEA 215 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHc--------CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccc
Confidence 6999999988888877766652 689999987665443333331 1112345789999999987410
Q ss_pred -------CC-CCHHHHHHHHHHHHhCC---------Cc------------------------------------------
Q 009048 174 -------GH-DFRPSYRKLSSLRNYLP---------DV------------------------------------------ 194 (545)
Q Consensus 174 -------g~-~fr~~~~~l~~l~~~~~---------~~------------------------------------------ 194 (545)
|. +-...|..+..+...+. ..
T Consensus 216 rtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~ 295 (764)
T PRK12326 216 LVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAH 295 (764)
T ss_pred cCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHH
Confidence 00 00012222221111110 00
Q ss_pred --------------------------------------------------------------------CEEEEEcCCChh
Q 009048 195 --------------------------------------------------------------------PILALTATAAPK 206 (545)
Q Consensus 195 --------------------------------------------------------------------~~l~lTAT~~~~ 206 (545)
.+.+||+|+...
T Consensus 296 ~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~ 375 (764)
T PRK12326 296 ALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAA 375 (764)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhH
Confidence 145666666433
Q ss_pred hHHHHHHHhcCCCCeEEeccCCCCcceeeeec--ccchhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCC
Q 009048 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG 282 (545)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g 282 (545)
. ..+.+.+++. ++..+.++|.+...... .....+++..+.+.+.. ..+.|+||.+.|++..+.++..|.+.|
T Consensus 376 ~-~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~g 451 (764)
T PRK12326 376 G-EQLRQFYDLG---VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAG 451 (764)
T ss_pred H-HHHHHHhCCc---EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCC
Confidence 2 3334444332 44455566655443221 11224566666555433 357799999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHHcCC-CcEEEeccccccccccC----------CC-----cEEEEeCCCCCHHHHHHHH
Q 009048 283 ISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRK----------DV-----RLVCHFNIPKSMEAFYQES 346 (545)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~-~~VLVaT~a~~~GiD~p----------~v-----~~VI~~~~p~s~~~y~Qr~ 346 (545)
++...+++.-...+-..+-+. |+ -.|.|||+++|+|.|+. .| =+||-...|.|-.---|-.
T Consensus 452 I~h~vLNAk~~~~EA~IIa~A---G~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLr 528 (764)
T PRK12326 452 VPAVVLNAKNDAEEARIIAEA---GKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLR 528 (764)
T ss_pred CcceeeccCchHhHHHHHHhc---CCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHh
Confidence 999999997554443333232 43 45899999999999986 22 3799999999999999999
Q ss_pred hhccCCCCCCeEEEEeccccH
Q 009048 347 GRAGRDQLPSKSLLYYGMDDR 367 (545)
Q Consensus 347 GRagR~g~~~~~i~~~~~~d~ 367 (545)
||+||.|.||.+..|++.+|.
T Consensus 529 GRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 529 GRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred cccccCCCCCceeEEEEcchh
Confidence 999999999999999998774
No 111
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1e-19 Score=188.46 Aligned_cols=300 Identities=19% Similarity=0.249 Sum_probs=202.2
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCe-EEEEcChHHHHHHHHHHHHH-cCCceeEecc
Q 009048 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGI-VLVVSPLIALMENQVIGLKE-KGIAGEFLSS 110 (545)
Q Consensus 39 ~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------~~~~-~lVi~P~~aL~~qq~~~l~~-~gi~~~~~~~ 110 (545)
..++-.+.+.++.+++-+|+.+.||||||. |+|-.. .++. +-+--|.+.-+.....+... +|++...-.+
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 456677788999899999999999999998 677653 3444 66666988777666666543 5554321111
Q ss_pred cccHHHHHHHHHhhhcCCCCccEEEECcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHH--HHHHHHH
Q 009048 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS--YRKLSSL 187 (545)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~--~~~l~~l 187 (545)
. +.+ ++++.+. ...+-| .|.| +++.+.....+..+++|+|||||.-. ...+ +.-+..+
T Consensus 344 Y---sIR---FEdcTSe--kTvlKY------MTDGmLlREfL~epdLasYSViiiDEAHERT-----L~TDILfgLvKDI 404 (902)
T KOG0923|consen 344 Y---SIR---FEDCTSE--KTVLKY------MTDGMLLREFLSEPDLASYSVIIVDEAHERT-----LHTDILFGLVKDI 404 (902)
T ss_pred e---EEE---eccccCc--ceeeee------ecchhHHHHHhccccccceeEEEeehhhhhh-----hhhhHHHHHHHHH
Confidence 0 000 1111111 122333 4444 34445555667778999999999743 2222 2334556
Q ss_pred HHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCc--ceeeeecc-cchhhHHHHHHHHHHhCCCccEEEE
Q 009048 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN--LFYEVRYK-DLLDDAYADLCSVLKANGDTCAIVY 264 (545)
Q Consensus 188 ~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~n--i~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~IIf 264 (545)
....|+.+++..|||+...-..++ +.+..++..+-.|-. ++|.-.+. +..+..+..+..+....+.+-+|||
T Consensus 405 ar~RpdLKllIsSAT~DAekFS~f-----FDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVF 479 (902)
T KOG0923|consen 405 ARFRPDLKLLISSATMDAEKFSAF-----FDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVF 479 (902)
T ss_pred HhhCCcceEEeeccccCHHHHHHh-----ccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEE
Confidence 666689999999999977654432 345555554433332 33333222 1122233333333334456779999
Q ss_pred ecchhhHHHHHHHHHh----C-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCC
Q 009048 265 CLERTTCDELSAYLSA----G-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335 (545)
Q Consensus 265 ~~t~~~~~~l~~~L~~----~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~ 335 (545)
....++.+...+.|.+ . .+-+.++|+.++.+....+++---.|-.+|++||++++..|.+++|.+||.-+.
T Consensus 480 ltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf 559 (902)
T KOG0923|consen 480 LTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGF 559 (902)
T ss_pred eccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcc
Confidence 9998888777766654 2 245789999999999999988888899999999999999999999999997664
Q ss_pred ------------------CCCHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 336 ------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 336 ------------------p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
|-|.++-.||.|||||.| ||.|+-+|+..
T Consensus 560 ~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 560 VKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred ccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 337888999999999999 99999999843
No 112
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.84 E-value=2.3e-20 Score=172.19 Aligned_cols=156 Identities=30% Similarity=0.410 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---C--CCeEEEEcChHHHHHHHHHHHHHcC----CceeEecc
Q 009048 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKEKG----IAGEFLSS 110 (545)
Q Consensus 40 r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~--~~~~lVi~P~~aL~~qq~~~l~~~g----i~~~~~~~ 110 (545)
+|+|.++++.+.+|+++++.||||+|||++|++|++. . ...+++++|+++|+.|+.+.+..++ +....+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 5899999999999999999999999999999998864 2 3499999999999999999998854 35666666
Q ss_pred cccHH-HHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 009048 111 TQTMQ-VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (545)
Q Consensus 111 ~~~~~-~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (545)
+.... ...... . ...+++++||+.+...-.. ... ....+++|||||+|++..|+ |+..+..+.....
T Consensus 81 ~~~~~~~~~~~~----~--~~~~ilv~T~~~l~~~~~~---~~~-~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 81 GQSISEDQREVL----S--NQADILVTTPEQLLDLISN---GKI-NISRLSLIVIDEAHHLSDET--FRAMLKSILRRLK 148 (169)
T ss_dssp TSCHHHHHHHHH----H--TTSSEEEEEHHHHHHHHHT---TSS-TGTTESEEEEETHHHHHHTT--HHHHHHHHHHHSH
T ss_pred cccccccccccc----c--ccccccccCcchhhccccc---ccc-ccccceeeccCccccccccc--HHHHHHHHHHHhc
Confidence 66543 222222 1 2378999999875431110 111 33448999999999999974 7887777777666
Q ss_pred hCCCcCEEEEEcCCChhh
Q 009048 190 YLPDVPILALTATAAPKV 207 (545)
Q Consensus 190 ~~~~~~~l~lTAT~~~~~ 207 (545)
..++.+++++|||+++.+
T Consensus 149 ~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 149 RFKNIQIILLSATLPSNV 166 (169)
T ss_dssp TTTTSEEEEEESSSTHHH
T ss_pred CCCCCcEEEEeeCCChhH
Confidence 666899999999999443
No 113
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.82 E-value=5.4e-18 Score=193.57 Aligned_cols=167 Identities=14% Similarity=0.134 Sum_probs=109.6
Q ss_pred CEEEEEcCCChh-hHHHHHHHhcCCCCeEE---eccCC-CCcceeeee-ccc-----chhhHH----HHHHHHHHhCCCc
Q 009048 195 PILALTATAAPK-VQKDVMESLCLQNPLVL---KSSFN-RPNLFYEVR-YKD-----LLDDAY----ADLCSVLKANGDT 259 (545)
Q Consensus 195 ~~l~lTAT~~~~-~~~~i~~~l~~~~~~~~---~~~~~-r~ni~~~v~-~~~-----~~~~~~----~~l~~~l~~~~~~ 259 (545)
++|++|||++.. ....+...+|+.+.... .++++ ..+....+. ... ..+... ..|.+++... ++
T Consensus 597 ~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~-~g 675 (850)
T TIGR01407 597 SLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAIT-SP 675 (850)
T ss_pred eEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc-CC
Confidence 578999999853 24556778888654322 22333 122221111 000 112222 2333343433 45
Q ss_pred cEEEEecchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCc--EEEEe
Q 009048 260 CAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR--LVCHF 333 (545)
Q Consensus 260 ~~IIf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~--~VI~~ 333 (545)
++|||++|.+..+.++..|.. .++. .+..+.. ..|..++++|++++..||++|+.|.+|||+|+.. .||..
T Consensus 676 ~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~ 752 (850)
T TIGR01407 676 KILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIP 752 (850)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEe
Confidence 799999999999999999975 2333 3333333 5788999999999999999999999999999865 57777
Q ss_pred CCCC------------------------------CHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 334 NIPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 334 ~~p~------------------------------s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
.+|. .+..+.|.+||.-|.....-++++.+.+
T Consensus 753 ~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 753 RLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 7764 1234578899999988665566666654
No 114
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.82 E-value=2.6e-18 Score=190.54 Aligned_cols=312 Identities=16% Similarity=0.139 Sum_probs=185.0
Q ss_pred ChhHHHHHHHHHhcCC---------CCCCHHHHHHHHHHH----c------CCCEEEEcCCCchHHHHHHHHHh-----c
Q 009048 21 HEKEALVKLLRWHFGH---------AQFRDKQLDAIQAVL----S------GRDCFCLMPTGGGKSMCYQIPAL-----A 76 (545)
Q Consensus 21 ~~~~~l~~~l~~~fg~---------~~~r~~Q~~~i~~il----~------g~d~lv~apTGsGKTl~~~lp~l-----~ 76 (545)
...+.+...++...-+ .-+|++|..|+..+. . .+..++++|||||||++....+. .
T Consensus 212 ~~~~~ll~~i~~~~~~~~~~~~~~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~ 291 (667)
T TIGR00348 212 LKKERLLDFIRNFIIFDKDTGLVTKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL 291 (667)
T ss_pred cCHHHHHHHHHheEEEECCCCceeeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc
Confidence 3445666666542111 126789999998764 2 24689999999999987553332 2
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhcc
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~ 156 (545)
..+++|||+|+.+|..|+.+.+..++..... ...+.. .+...+.. .+..++++|...+... ....+......
T Consensus 292 ~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~~--~~~s~~---~L~~~l~~--~~~~iivtTiQk~~~~-~~~~~~~~~~~ 363 (667)
T TIGR00348 292 KNPKVFFVVDRRELDYQLMKEFQSLQKDCAE--RIESIA---ELKRLLEK--DDGGIIITTIQKFDKK-LKEEEEKFPVD 363 (667)
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhhCCCCCc--ccCCHH---HHHHHHhC--CCCCEEEEEhHHhhhh-HhhhhhccCCC
Confidence 4578999999999999999999998753211 111111 11122222 2356888887766531 00111111110
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHH-HHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcC-CCCeEEecc--------
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCL-QNPLVLKSS-------- 226 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l-~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~-~~~~~~~~~-------- 226 (545)
..-.+||+||||+... | .+ ..++..+|+..+++|||||-......-...++. ....+...+
T Consensus 364 ~~~~lvIvDEaHrs~~-~--------~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG 434 (667)
T TIGR00348 364 RKEVVVIFDEAHRSQY-G--------ELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDG 434 (667)
T ss_pred CCCEEEEEEcCccccc-h--------HHHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcC
Confidence 1112899999998532 2 22 235577899999999999964311111111211 011111111
Q ss_pred CCCCcceeeeecccc----------------------h------------------------hhHHHHHHHHHHh---CC
Q 009048 227 FNRPNLFYEVRYKDL----------------------L------------------------DDAYADLCSVLKA---NG 257 (545)
Q Consensus 227 ~~r~ni~~~v~~~~~----------------------~------------------------~~~~~~l~~~l~~---~~ 257 (545)
+..| +.|....... . ......+.+.... ..
T Consensus 435 ~~~~-i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~ 513 (667)
T TIGR00348 435 LTVK-IDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELF 513 (667)
T ss_pred Ceee-EEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcc
Confidence 0001 1111110000 0 0001111111111 12
Q ss_pred CccEEEEecchhhHHHHHHHHHhC-----CCcEEEecCCCCHH---------------------HHHHHHHHHHc-CCCc
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDK---------------------ARSSVLDDWIS-SRKQ 310 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~---------------------~R~~~~~~f~~-g~~~ 310 (545)
+.+++|+|.++..|..+++.|.+. +..+..+++..+.. ....++++|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 468999999999999999998764 34556666654332 12467888875 7899
Q ss_pred EEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccC
Q 009048 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351 (545)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR 351 (545)
|||.++.+..|+|.|.+..++...+-++. .++|.+||+.|
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR 633 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNR 633 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhcc
Confidence 99999999999999999999987766664 58999999999
No 115
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.7e-19 Score=189.96 Aligned_cols=300 Identities=17% Similarity=0.206 Sum_probs=196.9
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----------CCCeEEEEcChHHHHHHHHHH----HHHcCCceeEe
Q 009048 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIVLVVSPLIALMENQVIG----LKEKGIAGEFL 108 (545)
Q Consensus 44 ~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~-----------~~~~~lVi~P~~aL~~qq~~~----l~~~gi~~~~~ 108 (545)
.+++++|..+--+||++.||||||. |+|-+. .++.+-|--|.|.-+--...+ |..+|-.+.+.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 3567777777788999999999997 566542 145677777887654443333 22223222221
Q ss_pred cccccHHHHHHHHHhhhcCCCCccEEEECcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 009048 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (545)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l 187 (545)
.... ....++..|. ++|.| +++.+....-+..++.|||||||.-+-...-.-..+.++-.|
T Consensus 340 IRfd------------~ti~e~T~Ik------FMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~L 401 (1172)
T KOG0926|consen 340 IRFD------------GTIGEDTSIK------FMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPL 401 (1172)
T ss_pred EEec------------cccCCCceeE------EecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHH
Confidence 1100 0011234444 44555 234444444556689999999998654221122223445555
Q ss_pred HHhCC-------CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeec---ccchhhHHHHHHHHHHhCC
Q 009048 188 RNYLP-------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY---KDLLDDAYADLCSVLKANG 257 (545)
Q Consensus 188 ~~~~~-------~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~---~~~~~~~~~~l~~~l~~~~ 257 (545)
|..+. ...+|.||||+.-.....-...+-+..| ++......-.+..++.. .+...+.+...+.+.+..+
T Consensus 402 R~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP-likVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP 480 (1172)
T KOG0926|consen 402 RQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP-LIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLP 480 (1172)
T ss_pred HHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCc-eeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCC
Confidence 55543 4568999999866544332333333344 44443332222222222 2344566777788888888
Q ss_pred CccEEEEecchhhHHHHHHHHHhC-----C--------------------------------------------------
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG-----G-------------------------------------------------- 282 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~-----g-------------------------------------------------- 282 (545)
.+.+|||+....+++++++.|++. +
T Consensus 481 ~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~ 560 (1172)
T KOG0926|consen 481 PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSG 560 (1172)
T ss_pred CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhccc
Confidence 899999999999999999999863 0
Q ss_pred --------------------------------------------CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc
Q 009048 283 --------------------------------------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (545)
Q Consensus 283 --------------------------------------------~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (545)
+-|.++++-++.+....+++.--.|..-++|||+++
T Consensus 561 ~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVA 640 (1172)
T KOG0926|consen 561 FASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVA 640 (1172)
T ss_pred chhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccch
Confidence 013567778888888888888778888899999999
Q ss_pred ccccccCCCcEEEEeCCCC------------------CHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 319 GMGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~------------------s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
+..+.+|+|++||..+-.+ |-++--||+|||||.| +|+|+-+|+..
T Consensus 641 ETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 641 ETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred hcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999999999876543 5556689999999999 99999999754
No 116
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.82 E-value=2.8e-18 Score=180.70 Aligned_cols=307 Identities=20% Similarity=0.241 Sum_probs=224.3
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHH--HHHHh----cCCCeEEEEcChHHHHHHHHHHHHHc--CCc
Q 009048 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCY--QIPAL----AKPGIVLVVSPLIALMENQVIGLKEK--GIA 104 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~--~lp~l----~~~~~~lVi~P~~aL~~qq~~~l~~~--gi~ 104 (545)
-.+|++|.+.++.+. +|-++|+.-..|-|||+-- ++.-+ ...|+-||++|.-.| ..|+..++++ +++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCCcc
Confidence 469999999887765 6778999999999999632 22222 236889999999888 5899999996 566
Q ss_pred eeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHH
Q 009048 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (545)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l 184 (545)
+..+++.. ..+.....++.... ..+++++|.|++.... ..+.+. .+.++||||||++.... ..|
T Consensus 245 ~~~~~Gdk--~eR~~~~r~~~~~~-~fdV~iTsYEi~i~dk--~~lk~~----~W~ylvIDEaHRiKN~~-------s~L 308 (971)
T KOG0385|consen 245 VVVYHGDK--EERAALRRDIMLPG-RFDVCITSYEIAIKDK--SFLKKF----NWRYLVIDEAHRIKNEK-------SKL 308 (971)
T ss_pred eEEEeCCH--HHHHHHHHHhhccC-CCceEeehHHHHHhhH--HHHhcC----CceEEEechhhhhcchh-------hHH
Confidence 66666544 55556665554433 6899999999876542 223333 38999999999998743 567
Q ss_pred HHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc------CC------------------------------
Q 009048 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FN------------------------------ 228 (545)
Q Consensus 185 ~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~------~~------------------------------ 228 (545)
..+.+.|...-.+++|+|+-.+...+++..|++--|.++... |+
T Consensus 309 ~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dV 388 (971)
T KOG0385|consen 309 SKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDV 388 (971)
T ss_pred HHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhH
Confidence 777777877778999999988888888888887766665320 00
Q ss_pred ----------------------------------------------------------CCcceeeeeccc-ch-------
Q 009048 229 ----------------------------------------------------------RPNLFYEVRYKD-LL------- 242 (545)
Q Consensus 229 ----------------------------------------------------------r~ni~~~v~~~~-~~------- 242 (545)
.|.++.-..+.+ ..
T Consensus 389 e~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~ 468 (971)
T KOG0385|consen 389 EKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVT 468 (971)
T ss_pred hhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHh
Confidence 000000000000 00
Q ss_pred -hhH---HHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC---CCcEEEec
Q 009048 243 -DDA---YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVAT 315 (545)
Q Consensus 243 -~~~---~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~VLVaT 315 (545)
..+ +..|+..|+. .+.++|||-.-....+-|..++.-+++....+.|.++.++|...++.|... ..-.|++|
T Consensus 469 nSGKm~vLDkLL~~Lk~-~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLST 547 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKE-QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLST 547 (971)
T ss_pred cCcceehHHHHHHHHHh-CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEec
Confidence 001 1112222222 356799998777777777777777899999999999999999999999853 34578999
Q ss_pred cccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEE
Q 009048 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (545)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~ 361 (545)
-|.|.|||+...+.||.||.-+++..-+|..-||.|-|+...+.+|
T Consensus 548 RAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 548 RAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred cccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 9999999999999999999999999999999999999998876665
No 117
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=3e-19 Score=181.80 Aligned_cols=331 Identities=16% Similarity=0.135 Sum_probs=216.1
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEEcChHHHHHHHHHHHHH-------
Q 009048 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKE------- 100 (545)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~-----~~~~~lVi~P~~aL~~qq~~~l~~------- 100 (545)
..-..++..+|.++++.+.+|+++++.-.|.+||++||++.+.. .....++++|+.++++++.....-
T Consensus 281 ~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~ 360 (1034)
T KOG4150|consen 281 KNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKA 360 (1034)
T ss_pred cccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhh
Confidence 34567799999999999999999999999999999999987653 345689999999999887554321
Q ss_pred cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc-cCCCCHH
Q 009048 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS-WGHDFRP 179 (545)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~-~g~~fr~ 179 (545)
+.-..+--..+.+....... . ..+.+++|..|.++-+..+-+.+.-.+..-...++++||+|...- .|..-..
T Consensus 361 ~K~A~V~~~D~~sE~~~~A~----~--R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~ 434 (1034)
T KOG4150|consen 361 RKSAYVEMSDKLSETTKSAL----K--RIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQD 434 (1034)
T ss_pred hhcceeecccCCCchhHHHH----H--hcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHH
Confidence 11111111111121111111 1 123788999998776654333322111122245789999998753 1221222
Q ss_pred HHHHHHHHHHhC---CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec--cCCCCcceeeeecccc------hhhHHHH
Q 009048 180 SYRKLSSLRNYL---PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRYKDL------LDDAYAD 248 (545)
Q Consensus 180 ~~~~l~~l~~~~---~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~--~~~r~ni~~~v~~~~~------~~~~~~~ 248 (545)
.++.|..+..-| .+.+++-.+||....++. .....++.....+.. ++.....+....+... ...++..
T Consensus 435 ~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 435 QLRALSDLIKGFEASINMGVYDGDTPYKDRTRL-RSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHH-HHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHH
Confidence 334455555444 267888888888776643 344555655444332 2222222221111100 0122222
Q ss_pred HHHHHHh--CCCccEEEEecchhhHHHHHHHHHh----CCC----cEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc
Q 009048 249 LCSVLKA--NGDTCAIVYCLERTTCDELSAYLSA----GGI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (545)
Q Consensus 249 l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~----~g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (545)
...++.+ ..+-++|-||.+|+-|+-+-..-++ -|- .+..|.||...++|+.+....-.|+..-+|||+|+
T Consensus 514 ~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNAL 593 (1034)
T KOG4150|consen 514 VSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNAL 593 (1034)
T ss_pred HHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchh
Confidence 2222211 1345799999999999887655443 221 25679999999999999999999999999999999
Q ss_pred ccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEec--cccHHHH
Q 009048 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG--MDDRRRM 370 (545)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~--~~d~~~~ 370 (545)
+.|||+...+.|++.+.|.|+..+-|..|||||.++++.++.+.. |-|...+
T Consensus 594 ELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 594 ELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred hhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhh
Confidence 999999999999999999999999999999999999888766543 4454443
No 118
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.81 E-value=6e-18 Score=181.77 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHH--HHHHHhc---CCCeEEEEcChHHHHHHHHHHHHHcCCceeEeccccc
Q 009048 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC--YQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (545)
Q Consensus 39 ~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~--~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~ 113 (545)
+-.||.+.+..+-.++.++++|||.+|||.+ |.+-.+. ..+.+|++.|+.+|++|....+..+-- ......+.+
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~-~~t~~rg~s 590 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFD-TKTFLRGVS 590 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhc-cCccccchh
Confidence 5679999999999999999999999999975 3444443 368999999999999987777655311 111122211
Q ss_pred HHHHHHHHHhhhcCCCCccEEEECcccc----cChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 009048 114 MQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (545)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~il~~tpe~~----~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (545)
. ......+.......++|+++.||.+ .+|.... ..-..++++|+||+|++.+...+ .-+..+.
T Consensus 591 l--~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q-----~~cerIRyiIfDEVH~iG~~ed~-----l~~Eqll- 657 (1330)
T KOG0949|consen 591 L--LGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQ-----KFCERIRYIIFDEVHLIGNEEDG-----LLWEQLL- 657 (1330)
T ss_pred h--HhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhh-----hhhhcceEEEechhhhccccccc-----hHHHHHH-
Confidence 1 1111222333345689999999944 3432111 11234889999999999874322 1111121
Q ss_pred hCCCcCEEEEEcCCChh
Q 009048 190 YLPDVPILALTATAAPK 206 (545)
Q Consensus 190 ~~~~~~~l~lTAT~~~~ 206 (545)
.+-.+|+++||||..+.
T Consensus 658 ~li~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 658 LLIPCPFLVLSATIGNP 674 (1330)
T ss_pred HhcCCCeeEEecccCCH
Confidence 22378999999998764
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.1e-17 Score=170.60 Aligned_cols=164 Identities=21% Similarity=0.306 Sum_probs=124.0
Q ss_pred CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEe-ccCCCCcceeeeeccc-chhhHHHHHHHHHHhCCCccEEEEecchhh
Q 009048 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNLFYEVRYKD-LLDDAYADLCSVLKANGDTCAIVYCLERTT 270 (545)
Q Consensus 193 ~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~ni~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~ 270 (545)
..+++.+|||+.+..... .-+---..+++ ++.-.|.+ .+++.. ..++.+..+..... .+.+++|-+-|++-
T Consensus 386 ~~q~i~VSATPg~~E~e~---s~~~vveQiIRPTGLlDP~i--evRp~~~QvdDL~~EI~~r~~--~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQ---SGGNVVEQIIRPTGLLDPEI--EVRPTKGQVDDLLSEIRKRVA--KNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHh---ccCceeEEeecCCCCCCCce--eeecCCCcHHHHHHHHHHHHh--cCCeEEEEeehHHH
Confidence 346899999998764331 10000011111 12222222 233322 23455555555444 35789999999999
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCC-----CCHHHHHHH
Q 009048 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP-----KSMEAFYQE 345 (545)
Q Consensus 271 ~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p-----~s~~~y~Qr 345 (545)
++.|.++|.+.|+++..+|++...-+|.+++..++.|.++|||.-+.+-.|+|+|.|.+|..+|.- .|-.+.+|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998854 588999999
Q ss_pred HhhccCCCCCCeEEEEecc
Q 009048 346 SGRAGRDQLPSKSLLYYGM 364 (545)
Q Consensus 346 ~GRagR~g~~~~~i~~~~~ 364 (545)
+|||+|.- .|.+++|.+.
T Consensus 539 IGRAARN~-~GkvIlYAD~ 556 (663)
T COG0556 539 IGRAARNV-NGKVILYADK 556 (663)
T ss_pred HHHHhhcc-CCeEEEEchh
Confidence 99999976 6888888764
No 120
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.1e-18 Score=181.20 Aligned_cols=300 Identities=16% Similarity=0.181 Sum_probs=193.8
Q ss_pred CHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh------cCCCeEEEEcChHHHHHHHHHHHHH-cCCceeEecccc
Q 009048 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQ 112 (545)
Q Consensus 40 r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l------~~~~~~lVi~P~~aL~~qq~~~l~~-~gi~~~~~~~~~ 112 (545)
...+.+.+..+.+++-+++++.||||||. |+|-. ...|.+-+--|.+.-+-....++.. +|.....-.
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~V--- 432 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTV--- 432 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccccc---
Confidence 34667777778788889999999999997 45443 3467777777999887777777654 443322111
Q ss_pred cHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC
Q 009048 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (545)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~ 192 (545)
.+..+ .++... ++..|-|+|.-++....+ ....+..+++||+||||.-+-. .| -.+--+..+.+...
T Consensus 433 GYsIR---FEdvT~--~~T~IkymTDGiLLrEsL-----~d~~L~kYSviImDEAHERslN-tD--ilfGllk~~larRr 499 (1042)
T KOG0924|consen 433 GYSIR---FEDVTS--EDTKIKYMTDGILLRESL-----KDRDLDKYSVIIMDEAHERSLN-TD--ILFGLLKKVLARRR 499 (1042)
T ss_pred ceEEE---eeecCC--CceeEEEeccchHHHHHh-----hhhhhhheeEEEechhhhcccc-hH--HHHHHHHHHHHhhc
Confidence 01000 111111 245666666665543322 2223445889999999985531 11 11223444555556
Q ss_pred CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCC-cceeeeecccchhhHHHH-HHHHH---HhCCCccEEEEecc
Q 009048 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDLLDDAYAD-LCSVL---KANGDTCAIVYCLE 267 (545)
Q Consensus 193 ~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-ni~~~v~~~~~~~~~~~~-l~~~l---~~~~~~~~IIf~~t 267 (545)
+.++|..|||+...-. ...+| .-|.+...+-.-| ++.|.-.+. ++.++. +.+.+ ...+.+-++||...
T Consensus 500 dlKliVtSATm~a~kf---~nfFg-n~p~f~IpGRTyPV~~~~~k~p~---eDYVeaavkq~v~Ihl~~~~GdilIfmtG 572 (1042)
T KOG0924|consen 500 DLKLIVTSATMDAQKF---SNFFG-NCPQFTIPGRTYPVEIMYTKTPV---EDYVEAAVKQAVQIHLSGPPGDILIFMTG 572 (1042)
T ss_pred cceEEEeeccccHHHH---HHHhC-CCceeeecCCccceEEEeccCch---HHHHHHHHhhheEeeccCCCCCEEEecCC
Confidence 8999999999976643 33344 3333332222211 122211111 222222 22222 23345679999988
Q ss_pred hhhHHHHHHHH----HhC------CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCC--
Q 009048 268 RTTCDELSAYL----SAG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-- 335 (545)
Q Consensus 268 ~~~~~~l~~~L----~~~------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~-- 335 (545)
.+..+-.+..+ .+. ++.+.++++.|+..-..++++.-..|-.++||||++++..+.+|++++||..+.
T Consensus 573 qediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K 652 (1042)
T KOG0924|consen 573 QEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCK 652 (1042)
T ss_pred CcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCcee
Confidence 87665555444 332 567899999999999999988888899999999999999999999999997663
Q ss_pred ----------------CCCHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 336 ----------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 336 ----------------p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
|-|-++--||.|||||.| ||.|+-+|..+
T Consensus 653 ~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 653 LKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 457888899999999999 99999999864
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1e-17 Score=183.80 Aligned_cols=323 Identities=20% Similarity=0.175 Sum_probs=214.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH---
Q 009048 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (545)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~--- 100 (545)
..+-++..|.. +++.|.-.--.+..|+ |+.|.||.|||+++.+|++. .+..+-|++|+--|+.+..+.+..
T Consensus 72 rEa~~R~lGm~-~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 72 REAGKRVMGMR-HFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred HHHHHHHhCCC-cchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34556667754 5667776555555554 99999999999999999874 577899999999999999888776
Q ss_pred -cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH---hhhccCCccEEEEeccccccc----
Q 009048 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS---- 172 (545)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~---- 172 (545)
+|+.+.++.+......+...+. .+|+|+|.-.+.-.-+...+. ...-...+.++||||+|.++=
T Consensus 149 ~lGl~v~~i~~~~~~~err~~Y~--------~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEAr 220 (913)
T PRK13103 149 FLGLSVGIVTPFQPPEEKRAAYA--------ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEAR 220 (913)
T ss_pred ccCCEEEEECCCCCHHHHHHHhc--------CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccC
Confidence 6899999988888888776654 789999988763322222211 111235589999999998741
Q ss_pred -------cCCCCHHHHHHHHHHHHhC--------------------CCc-------------------------------
Q 009048 173 -------WGHDFRPSYRKLSSLRNYL--------------------PDV------------------------------- 194 (545)
Q Consensus 173 -------~g~~fr~~~~~l~~l~~~~--------------------~~~------------------------------- 194 (545)
-...-...|..+..+...+ ...
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~ 300 (913)
T PRK13103 221 TPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYS 300 (913)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccC
Confidence 0011111222211111111 000
Q ss_pred --------------------------------------------------------------------------------
Q 009048 195 -------------------------------------------------------------------------------- 194 (545)
Q Consensus 195 -------------------------------------------------------------------------------- 194 (545)
T Consensus 301 ~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (913)
T PRK13103 301 AHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNY 380 (913)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHH
Confidence
Q ss_pred -----CEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeec--ccchhhHHHHHHHHHHh--CCCccEEEEe
Q 009048 195 -----PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYC 265 (545)
Q Consensus 195 -----~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~ 265 (545)
.+.+||+|+.... .++...+++ .++..+.++|.+...... ......++..+.+.+.. ..+.|+||-+
T Consensus 381 Fr~Y~kLsGMTGTa~te~-~Ef~~iY~l---~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT 456 (913)
T PRK13103 381 FRLYNKLSGMTGTADTEA-FEFRQIYGL---DVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGT 456 (913)
T ss_pred HHhcchhccCCCCCHHHH-HHHHHHhCC---CEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 1334444443322 222222222 234445555554322211 11224566666655543 3577999999
Q ss_pred cchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC-CCcEEEeccccccccccC-------------------
Q 009048 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRK------------------- 325 (545)
Q Consensus 266 ~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VLVaT~a~~~GiD~p------------------- 325 (545)
.|++..+.++..|.+.|++...+++.....+-.-+-+ .| .-.|.|||+++|+|.|+.
T Consensus 457 ~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~ 533 (913)
T PRK13103 457 ATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQ---AGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQ 533 (913)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHc---CCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHH
Confidence 9999999999999999998877777655444333332 34 346999999999999984
Q ss_pred -------------CC-----cEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccH
Q 009048 326 -------------DV-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (545)
Q Consensus 326 -------------~v-----~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~ 367 (545)
.| =+||-...+.|-.-=-|-.|||||.|.||.+..|++.+|-
T Consensus 534 ~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 534 IAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12 3789999999999999999999999999999999998774
No 122
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=1.3e-16 Score=173.44 Aligned_cols=324 Identities=17% Similarity=0.137 Sum_probs=213.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHH---
Q 009048 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK--- 99 (545)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~--- 99 (545)
+..+.++.+|+. +++.|.-.--.+..|+ |+.|.||-|||++..+|+.. .+..+-||+..--|+.--.+.+.
T Consensus 67 vREA~~R~lG~r-~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 67 AREATKRVLGKR-PYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred HHHHHHHHhCCC-cCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHH
Confidence 345667777875 6778887776666665 89999999999999999864 45667777888888875555543
Q ss_pred -HcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH---hhhccCCccEEEEeccccccc---
Q 009048 100 -EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (545)
Q Consensus 100 -~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~--- 172 (545)
-+|+.+.+..+......+...+ ..+|.|+|.--++-.-+...+. ...-...+.+.||||+|.++=
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY--------~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEA 215 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAY--------ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEA 215 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhc--------cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeeccc
Confidence 3799999888887777766554 3689999887655433332221 112234578999999998741
Q ss_pred --------cCCCCHHHHHHHHHHHHhCC--------CcC-----------------------------------------
Q 009048 173 --------WGHDFRPSYRKLSSLRNYLP--------DVP----------------------------------------- 195 (545)
Q Consensus 173 --------~g~~fr~~~~~l~~l~~~~~--------~~~----------------------------------------- 195 (545)
-+.+--..|..+..+...+. ...
T Consensus 216 rTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~ 295 (925)
T PRK12903 216 KTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHK 295 (925)
T ss_pred CCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHH
Confidence 11111123333333332221 011
Q ss_pred --------------------------------------------------------------------EEEEEcCCChhh
Q 009048 196 --------------------------------------------------------------------ILALTATAAPKV 207 (545)
Q Consensus 196 --------------------------------------------------------------------~l~lTAT~~~~~ 207 (545)
+.+||+|+....
T Consensus 296 lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~ 375 (925)
T PRK12903 296 VMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEE 375 (925)
T ss_pred HHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHH
Confidence 334444443221
Q ss_pred HHHHHHHhcCCCCeEEeccCCCCcceeeeec--ccchhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCCC
Q 009048 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (545)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g~ 283 (545)
.++...++ -.++..+.++|.+...... ......++..+.+.+.. ..+.|+||.|.|++..+.++..|.+.|+
T Consensus 376 -~Ef~~iY~---l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi 451 (925)
T PRK12903 376 -QEFIDIYN---MRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANI 451 (925)
T ss_pred -HHHHHHhC---CCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 22222222 2234445555554433221 11224556666555442 3577999999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcC-CCcEEEeccccccccccCCCc--------EEEEeCCCCCHHHHHHHHhhccCCCC
Q 009048 284 SCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDVR--------LVCHFNIPKSMEAFYQESGRAGRDQL 354 (545)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g-~~~VLVaT~a~~~GiD~p~v~--------~VI~~~~p~s~~~y~Qr~GRagR~g~ 354 (545)
+...+++.....+-.-+- ..| .-.|.|||+++|||.|+.--. +||....|.|-.---|-.||+||.|.
T Consensus 452 ~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGD 528 (925)
T PRK12903 452 PHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGD 528 (925)
T ss_pred CceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCC
Confidence 999999875443333222 235 356999999999999986322 89999999999888999999999999
Q ss_pred CCeEEEEeccccH
Q 009048 355 PSKSLLYYGMDDR 367 (545)
Q Consensus 355 ~~~~i~~~~~~d~ 367 (545)
||.+..|.+.+|.
T Consensus 529 pGss~f~lSLeD~ 541 (925)
T PRK12903 529 VGESRFFISLDDQ 541 (925)
T ss_pred CCcceEEEecchH
Confidence 9999999987763
No 123
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.76 E-value=7.8e-18 Score=148.13 Aligned_cols=118 Identities=30% Similarity=0.477 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHhC--CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccc
Q 009048 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (545)
Q Consensus 244 ~~~~~l~~~l~~~--~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (545)
.+...+.+++... .++++||||+++..++.+++.|.+.+.++..+||++++.+|..+++.|.++...||++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5666777777654 36789999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEE
Q 009048 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (545)
Q Consensus 322 iD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~ 361 (545)
+|+|++++||++++|.+...|.|++||++|.|+.|.+++|
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 124
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.76 E-value=3.6e-18 Score=182.79 Aligned_cols=338 Identities=19% Similarity=0.197 Sum_probs=194.9
Q ss_pred CcccccccccCCCCCCChhHHHH-HHHHH--hcCCCCCCHHHHHHHHHHH----cCC-CEEEEcCCCchHHHHHH--HHH
Q 009048 5 PLAMQSTSQTQKNKPLHEKEALV-KLLRW--HFGHAQFRDKQLDAIQAVL----SGR-DCFCLMPTGGGKSMCYQ--IPA 74 (545)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~-~~l~~--~fg~~~~r~~Q~~~i~~il----~g~-d~lv~apTGsGKTl~~~--lp~ 74 (545)
|+|++.+.+...++.+.-..... ..+.. .++-..+|.+|..||..+. +|+ .++++|.||+|||..+. +-.
T Consensus 129 pr~~e~f~~~~~le~l~~~r~~~~~~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~r 208 (875)
T COG4096 129 PRPVEGFYSQEELEGLLYRRQLRIQQLAYIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDR 208 (875)
T ss_pred CcchhhccCHHHHHHHhccccccccccccCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHH
Confidence 55666666555554433322222 11111 1233468999999987654 453 58999999999995432 223
Q ss_pred hc---CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHH-HH
Q 009048 75 LA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-KL 150 (545)
Q Consensus 75 l~---~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~-~l 150 (545)
|. ..+++|+++-+++|..|-...+..+-......+.... ..+..+++|.+.|.-.+....-.. ..
T Consensus 209 L~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~-----------~~~~~s~~i~lsTyqt~~~~~~~~~~~ 277 (875)
T COG4096 209 LIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIED-----------KKGDTSSEIYLSTYQTMTGRIEQKEDE 277 (875)
T ss_pred HHhcchhheeeEEechHHHHHHHHHHHHHhCCCccceeeeec-----------ccCCcceeEEEeehHHHHhhhhccccc
Confidence 33 3578999999999999998888775322211111000 111124667776655443211111 11
Q ss_pred HhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHh-c-------------
Q 009048 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL-C------------- 216 (545)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l-~------------- 216 (545)
......+.+++|||||||+- .|.+...+...+-.. .+++|||+......+-...+ |
T Consensus 278 ~~~f~~g~FDlIvIDEaHRg---------i~~~~~~I~dYFdA~-~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~ 347 (875)
T COG4096 278 YRRFGPGFFDLIVIDEAHRG---------IYSEWSSILDYFDAA-TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVE 347 (875)
T ss_pred cccCCCCceeEEEechhhhh---------HHhhhHHHHHHHHHH-HHhhccCcccccccccccccCCCcceeecHHHHhh
Confidence 11222345899999999963 345555555555333 34559998764332222222 1
Q ss_pred ---CCCCeEE--eccCCCCcceee---------------------eecc-------cchhhHHHHHHHHHHh--CC--Cc
Q 009048 217 ---LQNPLVL--KSSFNRPNLFYE---------------------VRYK-------DLLDDAYADLCSVLKA--NG--DT 259 (545)
Q Consensus 217 ---~~~~~~~--~~~~~r~ni~~~---------------------v~~~-------~~~~~~~~~l~~~l~~--~~--~~ 259 (545)
+-.+.++ ...+.+..+.+. .... .........+.+.++. .+ .+
T Consensus 348 DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~ 427 (875)
T COG4096 348 DGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIG 427 (875)
T ss_pred ccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccC
Confidence 1111111 111111111111 0000 0001123344555555 33 46
Q ss_pred cEEEEecchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHc--CCCcEEEeccccccccccCCCcEEEE
Q 009048 260 CAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCH 332 (545)
Q Consensus 260 ~~IIf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~--g~~~VLVaT~a~~~GiD~p~v~~VI~ 332 (545)
++||||.+..+|+.+...|... |--+..+.++-... ...+..|.. .-.+|.|+.+.+..|||+|.|..++.
T Consensus 428 KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF 505 (875)
T COG4096 428 KTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF 505 (875)
T ss_pred ceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeee
Confidence 8999999999999999999864 22345555544332 233455554 34568888899999999999999999
Q ss_pred eCCCCCHHHHHHHHhhccCC-C------CCCeEEEEeccc
Q 009048 333 FNIPKSMEAFYQESGRAGRD-Q------LPSKSLLYYGMD 365 (545)
Q Consensus 333 ~~~p~s~~~y~Qr~GRagR~-g------~~~~~i~~~~~~ 365 (545)
+..-.|..-|-|++||+-|. + +...-+++++.-
T Consensus 506 ~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 506 DRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred hhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 99999999999999999994 2 223456666544
No 125
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.76 E-value=2.7e-16 Score=177.53 Aligned_cols=168 Identities=13% Similarity=0.063 Sum_probs=105.3
Q ss_pred CEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeec--cc-----chhhHHHHHHHHHHh--CCCccEEEEe
Q 009048 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KD-----LLDDAYADLCSVLKA--NGDTCAIVYC 265 (545)
Q Consensus 195 ~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~-----~~~~~~~~l~~~l~~--~~~~~~IIf~ 265 (545)
++|++|||++-.-..++...+|+........++...+-...+.. .+ ..++....+.+.+.. ..+++++|++
T Consensus 575 ~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLF 654 (820)
T PRK07246 575 KTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLF 654 (820)
T ss_pred eEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 57899999962111236778888644333222221111111111 01 112222233322211 2356799999
Q ss_pred cchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccC--CCcEEEEeCCCC------
Q 009048 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--DVRLVCHFNIPK------ 337 (545)
Q Consensus 266 ~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p--~v~~VI~~~~p~------ 337 (545)
+|.+..+.++..|....+.+ ...|... .|..++++|++++..||++|..|.+|||+| +...||...+|-
T Consensus 655 tS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP 731 (820)
T PRK07246 655 NSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDP 731 (820)
T ss_pred CcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCH
Confidence 99999999999997665544 4444222 256689999999889999999999999997 355667777663
Q ss_pred ------------------------CHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 338 ------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 338 ------------------------s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
-+-.+.|-+||.=|....--++++++++
T Consensus 732 ~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 732 FVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred HHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 1334689999999987655566677665
No 126
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.75 E-value=1.1e-15 Score=167.29 Aligned_cols=282 Identities=17% Similarity=0.110 Sum_probs=180.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH--
Q 009048 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (545)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~-- 100 (545)
+..+..+.+|+. +++.|.-..-.+. +.-|+.|.||.|||+++.+|+.. .+..+-||+++..|+..-.+.+..
T Consensus 65 vrEa~~R~lG~r-~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 65 TREASFRTLGLR-HFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred HHHHHHHHhCCC-CCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 345667778876 6778877655554 44599999999999999999863 467799999999999877776554
Q ss_pred --cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH---hhhccCCccEEEEeccccccc---
Q 009048 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (545)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~--- 172 (545)
+|+.+.++.++.+...+...+ ..+|.|+|.--++-.-+...+. ...-...+.+.||||+|.++=
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY--------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeA 213 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNY--------LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEA 213 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhc--------CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccC
Confidence 799999988888887776654 3689999987555433333321 111234588999999998741
Q ss_pred --------cCCCCHHHHHHHHHHHHhCC----------------------------------------------------
Q 009048 173 --------WGHDFRPSYRKLSSLRNYLP---------------------------------------------------- 192 (545)
Q Consensus 173 --------~g~~fr~~~~~l~~l~~~~~---------------------------------------------------- 192 (545)
-...-...|..+..+...+.
T Consensus 214 rTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~ 293 (870)
T CHL00122 214 RTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKE 293 (870)
T ss_pred CCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHH
Confidence 00000011111111111000
Q ss_pred -------------------------------------------C----------------------cCEEEEEcCCChhh
Q 009048 193 -------------------------------------------D----------------------VPILALTATAAPKV 207 (545)
Q Consensus 193 -------------------------------------------~----------------------~~~l~lTAT~~~~~ 207 (545)
+ .++.+||+|+...
T Consensus 294 lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te- 372 (870)
T CHL00122 294 LFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTE- 372 (870)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHH-
Confidence 0 0256667776442
Q ss_pred HHHHHHHhcCCCCeEEeccCCCCcceeeeec--ccchhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCCC
Q 009048 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (545)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g~ 283 (545)
..++...+++ .++..+.++|........ .....+++..+.+.+.. ..+.|+||-|.|++..+.++..|.+.|+
T Consensus 373 ~~Ef~~iY~l---~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi 449 (870)
T CHL00122 373 ELEFEKIYNL---EVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRL 449 (870)
T ss_pred HHHHHHHhCC---CEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 2334443333 345566666665443321 11223455555544432 3567999999999999999999999999
Q ss_pred cEEEecCCCC--HHHHHHHHHHHHcC-CCcEEEeccccccccccC
Q 009048 284 SCAAYHAGLN--DKARSSVLDDWISS-RKQVVVATVAFGMGIDRK 325 (545)
Q Consensus 284 ~~~~~h~~l~--~~~R~~~~~~f~~g-~~~VLVaT~a~~~GiD~p 325 (545)
+...+++.-. ..+-.-+-+ .| .-.|.|||+++|||.|+.
T Consensus 450 ~h~vLNAk~~~~~~EA~IIA~---AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 450 PHQLLNAKPENVRRESEIVAQ---AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred ccceeeCCCccchhHHHHHHh---cCCCCcEEEeccccCCCcCee
Confidence 9999999742 333232222 24 346999999999999974
No 127
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=9.7e-17 Score=163.98 Aligned_cols=279 Identities=19% Similarity=0.238 Sum_probs=183.8
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccE
Q 009048 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 133 (545)
+-++-++||.||||.-+ +--+......++-.|++-|+.+.++++++.||++..+.+..-. . ....+ .....
T Consensus 192 kIi~H~GPTNSGKTy~A-Lqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~----~---~~~~~-~~a~h 262 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA-LQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERR----F---VLDNG-NPAQH 262 (700)
T ss_pred eEEEEeCCCCCchhHHH-HHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceee----e---cCCCC-Ccccc
Confidence 45677899999999753 3344455668999999999999999999999999877654321 1 11112 23678
Q ss_pred EEECcccccChhhHHHHHhhhccCCccEEEEeccccccc--cCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHH
Q 009048 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (545)
Q Consensus 134 l~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~--~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i 211 (545)
+-+|.|++.+.. .+++.||||.+.|.+ .|+.+-.++. .+... . |-|-+ .|.+..-+
T Consensus 263 vScTVEM~sv~~------------~yeVAViDEIQmm~Dp~RGwAWTrALL---Gl~Ad--E---iHLCG--epsvldlV 320 (700)
T KOG0953|consen 263 VSCTVEMVSVNT------------PYEVAVIDEIQMMRDPSRGWAWTRALL---GLAAD--E---IHLCG--EPSVLDLV 320 (700)
T ss_pred eEEEEEEeecCC------------ceEEEEehhHHhhcCcccchHHHHHHH---hhhhh--h---hhccC--CchHHHHH
Confidence 889999886643 278999999999976 3332221111 11110 1 11111 12333333
Q ss_pred HHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHHhC-CCccEEEEecchhhHHHHHHHHHhCCCc-EEEec
Q 009048 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYH 289 (545)
Q Consensus 212 ~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IIf~~t~~~~~~l~~~L~~~g~~-~~~~h 289 (545)
...+.+....+....+.|-+ +-. ..+.+..-+... ++.| |.|-|++..-.+...+.+.|.. ++.++
T Consensus 321 ~~i~k~TGd~vev~~YeRl~------pL~----v~~~~~~sl~nlk~GDC--vV~FSkk~I~~~k~kIE~~g~~k~aVIY 388 (700)
T KOG0953|consen 321 RKILKMTGDDVEVREYERLS------PLV----VEETALGSLSNLKPGDC--VVAFSKKDIFTVKKKIEKAGNHKCAVIY 388 (700)
T ss_pred HHHHhhcCCeeEEEeecccC------cce----ehhhhhhhhccCCCCCe--EEEeehhhHHHHHHHHHHhcCcceEEEe
Confidence 33333332222211111111 000 111222223333 3443 3355778888899999888766 99999
Q ss_pred CCCCHHHHHHHHHHHHc--CCCcEEEeccccccccccCCCcEEEEeCCC---------CCHHHHHHHHhhccCCCC---C
Q 009048 290 AGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNIP---------KSMEAFYQESGRAGRDQL---P 355 (545)
Q Consensus 290 ~~l~~~~R~~~~~~f~~--g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p---------~s~~~y~Qr~GRagR~g~---~ 355 (545)
|+++++.|.+--..|.+ ++++|||||+|.|||+|+ +|+.||.+++- -+..+..|-+|||||.|. .
T Consensus 389 GsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~ 467 (700)
T KOG0953|consen 389 GSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQ 467 (700)
T ss_pred cCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcC
Confidence 99999999999999996 899999999999999998 69999998865 378899999999999874 3
Q ss_pred CeEEEEeccccHHHHHHHHHhc
Q 009048 356 SKSLLYYGMDDRRRMEFILSKN 377 (545)
Q Consensus 356 ~~~i~~~~~~d~~~~~~i~~~~ 377 (545)
|.+..++ .+|...++.+++..
T Consensus 468 G~vTtl~-~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 468 GEVTTLH-SEDLKLLKRILKRP 488 (700)
T ss_pred ceEEEee-HhhHHHHHHHHhCC
Confidence 4555554 56788888887643
No 128
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.74 E-value=6.8e-18 Score=135.00 Aligned_cols=78 Identities=35% Similarity=0.520 Sum_probs=75.8
Q ss_pred HHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCC
Q 009048 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (545)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g 353 (545)
+.|+..|+.+..+||++++.+|..+++.|.+++..|||||+++++|||+|++++||++++|.|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999999987
No 129
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.74 E-value=8.8e-17 Score=177.10 Aligned_cols=308 Identities=18% Similarity=0.189 Sum_probs=198.8
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------C--CCeEEEEcChHHHHHHHHHHHHH-cCCceeEec
Q 009048 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------K--PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (545)
Q Consensus 39 ~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------~--~~~~lVi~P~~aL~~qq~~~l~~-~gi~~~~~~ 109 (545)
....+.++++++.+.+.+++.+.||+|||. |+|... . .-.+++--|.|--+-...++... .|-...
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTT--QvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g--- 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTT--QVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLG--- 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchh--hhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccC---
Confidence 346788899999999999999999999997 444321 1 23455556876544444444433 221111
Q ss_pred ccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 009048 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (545)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (545)
....++.+. . .......+++|+|.-+ +++.+........+..||+||+|.-+.. .||--.+ +..+..
T Consensus 249 ~~VGYqvrl--~---~~~s~~t~L~fcTtGv-----LLr~L~~~~~l~~vthiivDEVHER~i~-~DflLi~--lk~lL~ 315 (924)
T KOG0920|consen 249 EEVGYQVRL--E---SKRSRETRLLFCTTGV-----LLRRLQSDPTLSGVTHIIVDEVHERSIN-TDFLLIL--LKDLLP 315 (924)
T ss_pred CeeeEEEee--e---cccCCceeEEEecHHH-----HHHHhccCcccccCceeeeeeEEEccCC-cccHHHH--HHHHhh
Confidence 000000000 0 0011124555554332 3445555556677899999999986653 3454333 334566
Q ss_pred hCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcce-------------------eeee-------------
Q 009048 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF-------------------YEVR------------- 237 (545)
Q Consensus 190 ~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~-------------------~~v~------------- 237 (545)
..|+.++|+||||+..+...+.+. ..|++...++.-|-.. +...
T Consensus 316 ~~p~LkvILMSAT~dae~fs~YF~----~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 316 RNPDLKVILMSATLDAELFSDYFG----GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred hCCCceEEEeeeecchHHHHHHhC----CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 669999999999998655443322 3344333222211100 0000
Q ss_pred cccchhhHHHHHHHHHHh-CCCccEEEEecchhhHHHHHHHHHhC-------CCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 009048 238 YKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRK 309 (545)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~-~~~~~~IIf~~t~~~~~~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (545)
..+..-+.+..+..++.. ...+.+|||.+...++..+.+.|... .+-+.++|+.|+..+.+.+....-.|..
T Consensus 392 ~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~R 471 (924)
T KOG0920|consen 392 EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTR 471 (924)
T ss_pred cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcc
Confidence 000111233344444433 34678999999999999999999752 2457899999999999999999899999
Q ss_pred cEEEeccccccccccCCCcEEEEeCCCC------------------CHHHHHHHHhhccCCCCCCeEEEEeccccHHH
Q 009048 310 QVVVATVAFGMGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (545)
Q Consensus 310 ~VLVaT~a~~~GiD~p~v~~VI~~~~p~------------------s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~ 369 (545)
+||+||++++.+|-++||-+||..+.-+ |...-.||.|||||.- +|.|+-+|+......
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~-~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR-PGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc-CCeeEEeechhhhhh
Confidence 9999999999999999999999766432 6677799999999986 899999998765443
No 130
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.73 E-value=1.1e-16 Score=176.09 Aligned_cols=315 Identities=21% Similarity=0.260 Sum_probs=221.6
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHH---HHH---HHHhcCCCeEEEEcChHHHHHHHHHHHHH-cCCce
Q 009048 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM---CYQ---IPALAKPGIVLVVSPLIALMENQVIGLKE-KGIAG 105 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl---~~~---lp~l~~~~~~lVi~P~~aL~~qq~~~l~~-~gi~~ 105 (545)
.++|.+|.+.++.++ +++++|+.-..|-|||+ +|+ .-.....|..|||+|+-.+. .|...+.. ..+++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~~w~~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETWTDMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHHHHhhhce
Confidence 579999999887765 67899999999999994 343 33334578899999998775 45555444 46677
Q ss_pred eEecccccHHHHHHHHHhhhcC---CCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHH
Q 009048 106 EFLSSTQTMQVKTKIYEDLDSG---KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (545)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~ 182 (545)
.+.++..........++..... .-.+.++++|.|++...- ..|..+. +.+++|||||++..-. .
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~----w~~~~vDeahrLkN~~-------~ 514 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIP----WRYLLVDEAHRLKNDE-------S 514 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCC----cceeeecHHhhcCchH-------H
Confidence 7777666555544444444333 225788999999875532 1223332 7899999999987522 3
Q ss_pred HHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc------CC--------------CCcc----------
Q 009048 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FN--------------RPNL---------- 232 (545)
Q Consensus 183 ~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~------~~--------------r~ni---------- 232 (545)
.+...+..+.--..+++|+|+-.+..++++..+++..|.-+... ++ .|.+
T Consensus 515 ~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek 594 (1373)
T KOG0384|consen 515 KLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK 594 (1373)
T ss_pred HHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc
Confidence 33344455555567999999998888888888776655433210 00 0000
Q ss_pred --------eeeeecccc-----------------------------------------------hh---hHH------HH
Q 009048 233 --------FYEVRYKDL-----------------------------------------------LD---DAY------AD 248 (545)
Q Consensus 233 --------~~~v~~~~~-----------------------------------------------~~---~~~------~~ 248 (545)
.+.|...+. .+ ..+ ..
T Consensus 595 slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 595 SLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 000000000 00 001 12
Q ss_pred HHHHHHh---------------CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc---CCCc
Q 009048 249 LCSVLKA---------------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRKQ 310 (545)
Q Consensus 249 l~~~l~~---------------~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~---g~~~ 310 (545)
|..++.. .++.++|||-.-+.-.+-|+++|..++++.-.+.|.+..+.|++.++.|.. ....
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 2222221 246789999999999999999999999999999999999999999999984 4567
Q ss_pred EEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEE--Eeccc
Q 009048 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL--YYGMD 365 (545)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~--~~~~~ 365 (545)
.|+||-|.|-|||+...+.||+||.-+++.+=+|..-||.|-|+...+-+ |++..
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 89999999999999999999999999999999999999999998876544 45544
No 131
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=6.6e-15 Score=148.39 Aligned_cols=321 Identities=16% Similarity=0.202 Sum_probs=197.3
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh------cCCCeEEEEcCh
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPL 87 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l------~~~~~~lVi~P~ 87 (545)
...|...+-.+...+.|++.-.+. .+..+.+-++.+.+++-+++++.||||||. |+|-. ...+.+...-|.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LP-vw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~~~~v~CTQpr 100 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELP-VWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSHLTGVACTQPR 100 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCc-hHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhhccceeecCch
Confidence 455666677788888888754332 334445566666677888999999999996 33322 123445556688
Q ss_pred HHHHHHHHHHHHH-cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhh-HHHHHhhhccCCccEEEEe
Q 009048 88 IALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAID 165 (545)
Q Consensus 88 ~aL~~qq~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~-~~~l~~~~~~~~l~~iViD 165 (545)
+.-+.+...+... +.+... ...++..+ .+++... +.-+ ..+|.+. ++......-.+.+++||+|
T Consensus 101 rvaamsva~RVadEMDv~lG---~EVGysIr---fEdC~~~--~T~L------ky~tDgmLlrEams~p~l~~y~viiLD 166 (699)
T KOG0925|consen 101 RVAAMSVAQRVADEMDVTLG---EEVGYSIR---FEDCTSP--NTLL------KYCTDGMLLREAMSDPLLGRYGVIILD 166 (699)
T ss_pred HHHHHHHHHHHHHHhccccc---hhcccccc---ccccCCh--hHHH------HHhcchHHHHHHhhCcccccccEEEec
Confidence 7766666555443 222111 00001000 0011100 0111 2344443 3333445556779999999
Q ss_pred ccccccccCCCCHHHH--HHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeec-ccch
Q 009048 166 EAHCISSWGHDFRPSY--RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-KDLL 242 (545)
Q Consensus 166 EaH~i~~~g~~fr~~~--~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~-~~~~ 242 (545)
|||.-+- ..+. .-|..++...|+.+++.+|||+...-.. .+....|.+-..+...-.++|.-.. .+..
T Consensus 167 eahERtl-----ATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq----~yf~n~Pll~vpg~~PvEi~Yt~e~erDyl 237 (699)
T KOG0925|consen 167 EAHERTL-----ATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQ----RYFGNAPLLAVPGTHPVEIFYTPEPERDYL 237 (699)
T ss_pred hhhhhhH-----HHHHHHHHHHHHHhhCCCceEEEeecccchHHHH----HHhCCCCeeecCCCCceEEEecCCCChhHH
Confidence 9997432 2222 2355666667999999999998765433 2223344443333333334443332 2333
Q ss_pred hhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC---------CCcEEEecCCCCHHHHHHHHHHHHc---C--C
Q 009048 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------GISCAAYHAGLNDKARSSVLDDWIS---S--R 308 (545)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~~---g--~ 308 (545)
+..+..+.++......+-++||....++.+..++.+... .+.+..+| +.+...+++.... | .
T Consensus 238 EaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~ 313 (699)
T KOG0925|consen 238 EAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYG 313 (699)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCcc
Confidence 445555666655555677999999999998888888742 24677888 3333333222221 2 3
Q ss_pred CcEEEeccccccccccCCCcEEEEeCC------------------CCCHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 309 KQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 309 ~~VLVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
.+|+|+|+.++..+-++.|.+||.-++ |-|..+-.||.|||||.. +|.|+.+|..+
T Consensus 314 RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~-pGkcfrLYte~ 387 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRLYTEE 387 (699)
T ss_pred ceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC-CCceEEeecHH
Confidence 479999999999999999999997664 558899999999999976 99999999854
No 132
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=3e-14 Score=155.77 Aligned_cols=282 Identities=18% Similarity=0.153 Sum_probs=177.6
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH---
Q 009048 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (545)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~--- 100 (545)
..+.++.+|.. +++.|.-.--++..|+ |+.|.||-|||+++.+|+.. .+..+-||++..-|+..-.+.+..
T Consensus 75 REa~~R~lG~r-~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 75 REASKRVLGMR-HFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred HHHHHHHhCCC-cchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 35556677765 5667776655555554 99999999999999999975 467799999999999866666544
Q ss_pred -cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh---hhccCCccEEEEeccccccc----
Q 009048 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCISS---- 172 (545)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~---~~~~~~l~~iViDEaH~i~~---- 172 (545)
+|+.+.++.+......+...+ ..+|+|+|+--+.-.-+...+.. ..-...+.+.||||+|.++=
T Consensus 152 ~LGLtvg~i~~~~~~~err~aY--------~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEAr 223 (939)
T PRK12902 152 FLGLSVGLIQQDMSPEERKKNY--------ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEAR 223 (939)
T ss_pred HhCCeEEEECCCCChHHHHHhc--------CCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCC
Confidence 799999988887777766554 37899999987765444444422 11235588999999998741
Q ss_pred -------cCCCCHHHHHHHHHHHHhCC---------------CcC-----------------------------------
Q 009048 173 -------WGHDFRPSYRKLSSLRNYLP---------------DVP----------------------------------- 195 (545)
Q Consensus 173 -------~g~~fr~~~~~l~~l~~~~~---------------~~~----------------------------------- 195 (545)
-...-...|.....+...+. ...
T Consensus 224 TPLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~A 303 (939)
T PRK12902 224 TPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNA 303 (939)
T ss_pred CcccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHH
Confidence 01111122222222221110 011
Q ss_pred -------------------------------------------------------------------------EEEEEcC
Q 009048 196 -------------------------------------------------------------------------ILALTAT 202 (545)
Q Consensus 196 -------------------------------------------------------------------------~l~lTAT 202 (545)
+.+||+|
T Consensus 304 L~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGT 383 (939)
T PRK12902 304 LKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGT 383 (939)
T ss_pred HHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCC
Confidence 3444555
Q ss_pred CChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecc--cchhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHH
Q 009048 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYL 278 (545)
Q Consensus 203 ~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~--~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L 278 (545)
+.... .++...++ -.++..+.++|......... .....++..+.+.+.. ..+.|+||-+.|++..+.++..|
T Consensus 384 a~te~-~Ef~~iY~---l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L 459 (939)
T PRK12902 384 AKTEE-VEFEKTYK---LEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALL 459 (939)
T ss_pred CHHHH-HHHHHHhC---CcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHH
Confidence 43222 22222222 23444455555544332211 1224556666554432 35779999999999999999999
Q ss_pred HhCCCcEEEecCCCCHHHH-HHHHHHHHcCC-CcEEEeccccccccccC
Q 009048 279 SAGGISCAAYHAGLNDKAR-SSVLDDWISSR-KQVVVATVAFGMGIDRK 325 (545)
Q Consensus 279 ~~~g~~~~~~h~~l~~~~R-~~~~~~f~~g~-~~VLVaT~a~~~GiD~p 325 (545)
.+.|++...+++.-...++ ..+..+ .|+ -.|-|||+++|+|-|+.
T Consensus 460 ~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 460 QEQGIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHcCCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 9999999999997322222 222222 343 45899999999999874
No 133
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.70 E-value=6.5e-17 Score=163.08 Aligned_cols=285 Identities=18% Similarity=0.194 Sum_probs=189.6
Q ss_pred CCCCHHHHHHHHHHHc-C--CCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcC-Cc---eeEec
Q 009048 37 AQFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG-IA---GEFLS 109 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~-g--~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~g-i~---~~~~~ 109 (545)
..+||+|+..+..+.. | +..+++.|+|+|||++-.-++..-.+.+||++.+-.-+.||..+++... +. +..+.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFT 380 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFT 380 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEee
Confidence 4789999999999884 3 5789999999999998665555557789999988888888888877631 21 11111
Q ss_pred ccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhH----HHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH
Q 009048 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM----SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (545)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~----~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (545)
+.. + ........+++.|..+++..+.. ..+........++++++||+|.+...- ||.. .
T Consensus 381 sd~--K---------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M--FRRV----l 443 (776)
T KOG1123|consen 381 SDA--K---------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM--FRRV----L 443 (776)
T ss_pred ccc--c---------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH--HHHH----H
Confidence 111 0 01122467999999988754422 223344455669999999999987633 5432 2
Q ss_pred HHHHhCCCcCEEEEEcCCChhhHHHHHHHhc-CCCCeEEecc---------------------C-------------CCC
Q 009048 186 SLRNYLPDVPILALTATAAPKVQKDVMESLC-LQNPLVLKSS---------------------F-------------NRP 230 (545)
Q Consensus 186 ~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~-~~~~~~~~~~---------------------~-------------~r~ 230 (545)
.+.+ ....++||||+..+.-+ +..|+ +..|.++... . .+.
T Consensus 444 siv~---aHcKLGLTATLvREDdK--I~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 444 SIVQ---AHCKLGLTATLVREDDK--ITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHH---HHhhccceeEEeecccc--ccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 2222 22258999998765422 22222 1222222111 0 011
Q ss_pred cceeeeecccchhhHHH---HHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHH-c
Q 009048 231 NLFYEVRYKDLLDDAYA---DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI-S 306 (545)
Q Consensus 231 ni~~~v~~~~~~~~~~~---~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~-~ 306 (545)
.+.|... ..++. .|.++... .+.++|||..+.-....+|-.|.+ -.++|..++.+|..+++.|+ +
T Consensus 519 ~lLyvMN-----P~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n 587 (776)
T KOG1123|consen 519 MLLYVMN-----PNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTN 587 (776)
T ss_pred heeeecC-----cchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccC
Confidence 1111111 12332 33333333 567899999988877777777644 46889999999999999999 5
Q ss_pred CCCcEEEeccccccccccCCCcEEEEeCCC-CCHHHHHHHHhhccCCCC
Q 009048 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQL 354 (545)
Q Consensus 307 g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p-~s~~~y~Qr~GRagR~g~ 354 (545)
..+..|+-+.+....||+|...++|+...- .|-.+-.||.||.-|+.+
T Consensus 588 ~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 588 PKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred CccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 678899999999999999999999987643 477888999999999753
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.70 E-value=1.9e-14 Score=165.32 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=109.6
Q ss_pred CEEEEEcCCChhh-HHHHHHHhcCCCC----eEEeccCCCC-cceeeeec-cc-----chhhHHHH----HHHHHHhCCC
Q 009048 195 PILALTATAAPKV-QKDVMESLCLQNP----LVLKSSFNRP-NLFYEVRY-KD-----LLDDAYAD----LCSVLKANGD 258 (545)
Q Consensus 195 ~~l~lTAT~~~~~-~~~i~~~l~~~~~----~~~~~~~~r~-ni~~~v~~-~~-----~~~~~~~~----l~~~l~~~~~ 258 (545)
++|++|||++... ...+...+|+.+. ..+.++++.. +....+.. .+ ..+..... |.+++.. .+
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~-~~ 752 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKA-TK 752 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHh-CC
Confidence 4788999987532 3444677888642 2333444432 21111110 11 11222233 3333333 34
Q ss_pred ccEEEEecchhhHHHHHHHHHhCCC--cEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCC--CcEEEEeC
Q 009048 259 TCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD--VRLVCHFN 334 (545)
Q Consensus 259 ~~~IIf~~t~~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~--v~~VI~~~ 334 (545)
+.++|+++|.+..+.++..|..... ....+.-+++...|..++++|++++-.||++|..|.+|||+|+ ++.||...
T Consensus 753 g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~k 832 (928)
T PRK08074 753 GRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVR 832 (928)
T ss_pred CCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEec
Confidence 5799999999999999999976422 1222333444456889999999988899999999999999997 48899888
Q ss_pred CCC------------------------------CHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 335 IPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 335 ~p~------------------------------s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
+|- .+-.+.|.+||.-|....--++++.+.+
T Consensus 833 LPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 833 LPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 774 1234478899999988655566666655
No 135
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.67 E-value=6.1e-15 Score=160.14 Aligned_cols=309 Identities=18% Similarity=0.110 Sum_probs=190.2
Q ss_pred CCCHHHHHHHHHHHc---C-------CCEEEEcCCCchHHHH---HHHHHhcC--C-----CeEEEEcChHHHHHHHHHH
Q 009048 38 QFRDKQLDAIQAVLS---G-------RDCFCLMPTGGGKSMC---YQIPALAK--P-----GIVLVVSPLIALMENQVIG 97 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~---g-------~d~lv~apTGsGKTl~---~~lp~l~~--~-----~~~lVi~P~~aL~~qq~~~ 97 (545)
.++|+|.+.+.-+-+ | .-||+.-..|+|||+- |+...+.+ . .+.|||+|. .|+..|...
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 589999999887642 2 2466667899999963 22333322 2 568999997 677899999
Q ss_pred HHHcCCc----eeEecccccH--HHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009048 98 LKEKGIA----GEFLSSTQTM--QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (545)
Q Consensus 98 l~~~gi~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (545)
+.+..++ ...+.+.... .....+. .+.......-+++.+.|.+ ...........++++|.||.|..-
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil-~~~~~~~~~~vli~sye~~------~~~~~~il~~~~glLVcDEGHrlk 389 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSIL-FLGYKQFTTPVLIISYETA------SDYCRKILLIRPGLLVCDEGHRLK 389 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHH-HhhhhheeEEEEeccHHHH------HHHHHHHhcCCCCeEEECCCCCcc
Confidence 9885432 2222222221 0001111 1111111123333333333 223333445669999999999975
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccC------CC----------------
Q 009048 172 SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------NR---------------- 229 (545)
Q Consensus 172 ~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~------~r---------------- 229 (545)
.-. ..+...+........|+||+|+-.+...+++..+++.+|.++.... ..
T Consensus 390 N~~-------s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~ 462 (776)
T KOG0390|consen 390 NSD-------SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRE 462 (776)
T ss_pred chh-------hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhh
Confidence 422 3444444555566789999999999989999988888776542210 00
Q ss_pred ----------------------------Ccceeeeecc-cc--hhhHHHHH-----------------------------
Q 009048 230 ----------------------------PNLFYEVRYK-DL--LDDAYADL----------------------------- 249 (545)
Q Consensus 230 ----------------------------~ni~~~v~~~-~~--~~~~~~~l----------------------------- 249 (545)
|..+..+... .. ....+..|
T Consensus 463 ~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L 542 (776)
T KOG0390|consen 463 REERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSL 542 (776)
T ss_pred hHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHh
Confidence 0000000000 00 00011111
Q ss_pred -----------------------------------------HHHHHhCCCccE---EEEecchhhHHH-HHHHHHhCCCc
Q 009048 250 -----------------------------------------CSVLKANGDTCA---IVYCLERTTCDE-LSAYLSAGGIS 284 (545)
Q Consensus 250 -----------------------------------------~~~l~~~~~~~~---IIf~~t~~~~~~-l~~~L~~~g~~ 284 (545)
..++.. ...++ .||+.......+ +...++-+|+.
T Consensus 543 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~-~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~ 621 (776)
T KOG0390|consen 543 LLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV-IREKLLVKSVLISNYTQTLDLFEQLCRWRGYE 621 (776)
T ss_pred hcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHH-HhhhcceEEEEeccHHHHHHHHHHHHhhcCce
Confidence 111100 00112 333344444444 44444456999
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCC---CcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEE
Q 009048 285 CAAYHAGLNDKARSSVLDDWISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (545)
Q Consensus 285 ~~~~h~~l~~~~R~~~~~~f~~g~---~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~ 361 (545)
+..+||.|+..+|+.+++.|.+-. .-.|.+|-|.|.||++-+...||.+|++++++.-.|.++||-|+||+-.|++|
T Consensus 622 ~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 622 VLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999633 33566788999999999999999999999999999999999999999988887
Q ss_pred e
Q 009048 362 Y 362 (545)
Q Consensus 362 ~ 362 (545)
-
T Consensus 702 r 702 (776)
T KOG0390|consen 702 R 702 (776)
T ss_pred E
Confidence 3
No 136
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.67 E-value=5e-15 Score=157.17 Aligned_cols=309 Identities=18% Similarity=0.144 Sum_probs=209.2
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHH--HHHHHHhcC----CCeEEEEcChHHHHHHHHHHHHHcCC--c
Q 009048 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM--CYQIPALAK----PGIVLVVSPLIALMENQVIGLKEKGI--A 104 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl--~~~lp~l~~----~~~~lVi~P~~aL~~qq~~~l~~~gi--~ 104 (545)
..+.++|++.++.+. .+.-.|+--..|-|||+ +..|.++.. .+++|||||. .+|.||+..+....- .
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~r 282 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFR 282 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceE
Confidence 357889999998875 34566888899999995 334555543 3789999997 466899999999653 4
Q ss_pred eeEecccccHHH---------HHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC
Q 009048 105 GEFLSSTQTMQV---------KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (545)
Q Consensus 105 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~ 175 (545)
+..+++..+... +..+.. ......-.++++|.+.+... ........++++|+||.|.|-.-.
T Consensus 283 v~ilh~t~s~~r~~~~~~~~~~~~~L~--r~~~~~~~ilitty~~~r~~------~d~l~~~~W~y~ILDEGH~IrNpn- 353 (923)
T KOG0387|consen 283 VFILHGTGSGARYDASHSSHKKDKLLI--RKVATDGGILITTYDGFRIQ------GDDLLGILWDYVILDEGHRIRNPN- 353 (923)
T ss_pred EEEEecCCcccccccchhhhhhhhhhe--eeecccCcEEEEehhhhccc------CcccccccccEEEecCcccccCCc-
Confidence 455555544211 111111 11112234556665544332 222333458999999999987644
Q ss_pred CCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEE------ecc-----------------------
Q 009048 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL------KSS----------------------- 226 (545)
Q Consensus 176 ~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~------~~~----------------------- 226 (545)
.++......++....+.||+|+-.+-..+++..+.+..|-.+ ...
T Consensus 354 ------s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~ayk 427 (923)
T KOG0387|consen 354 ------SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYK 427 (923)
T ss_pred ------cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHH
Confidence 566666777788889999999877666666654443322110 000
Q ss_pred ---------------------------------------------------------------------------CCCCc
Q 009048 227 ---------------------------------------------------------------------------FNRPN 231 (545)
Q Consensus 227 ---------------------------------------------------------------------------~~r~n 231 (545)
.+.|.
T Consensus 428 ca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPd 507 (923)
T KOG0387|consen 428 CAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPD 507 (923)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcc
Confidence 00010
Q ss_pred ceeee---e--cccc-----hhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHH-hCCCcEEEecCCCCHHHHH
Q 009048 232 LFYEV---R--YKDL-----LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARS 298 (545)
Q Consensus 232 i~~~v---~--~~~~-----~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~-~~g~~~~~~h~~l~~~~R~ 298 (545)
+...- . ..+. ...++..+..+++. ..+.++|.|..++....-+...|. ..|+....+.|..+...|.
T Consensus 508 ll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~ 587 (923)
T KOG0387|consen 508 LLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQ 587 (923)
T ss_pred cccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhh
Confidence 00000 0 0000 00122333333321 124489999999999999999998 5899999999999999999
Q ss_pred HHHHHHHcCCC--cEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEE
Q 009048 299 SVLDDWISSRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (545)
Q Consensus 299 ~~~~~f~~g~~--~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~ 361 (545)
.+.++|.+++. -.|++|.+.|-|+|+-..+.||.||+.+++.+-.|..-||-|-|+...+++|
T Consensus 588 ~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 588 KLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred HHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 99999997764 3678999999999999999999999999999999999999999998877666
No 137
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.65 E-value=8.4e-14 Score=151.01 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=110.7
Q ss_pred CEEEEEcCCChhh------HHHHHHHhcCCCCe-EEeccCC----CCc--ceeeeec------ccc--------------
Q 009048 195 PILALTATAAPKV------QKDVMESLCLQNPL-VLKSSFN----RPN--LFYEVRY------KDL-------------- 241 (545)
Q Consensus 195 ~~l~lTAT~~~~~------~~~i~~~l~~~~~~-~~~~~~~----r~n--i~~~v~~------~~~-------------- 241 (545)
++|+.|||++... ...+.+.+|+.... .+.++|+ +.. +.|.... .+.
T Consensus 373 ~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~ 452 (636)
T TIGR03117 373 GAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAER 452 (636)
T ss_pred eEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchh
Confidence 4799999998744 67888899986442 3345666 444 3332211 111
Q ss_pred --hhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc----CCCcEEEec
Q 009048 242 --LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVAT 315 (545)
Q Consensus 242 --~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~----g~~~VLVaT 315 (545)
.+.....+..++...+ +.++|.+.|....+.+++.|...---...+.|..+ .|..++++|++ |.-.||++|
T Consensus 453 ~~~~~~~~~~~~~~~~~~-G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 453 TWLENVSLSTAAILRKAQ-GGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred hHHHHHHHHHHHHHHHcC-CCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 0113345555555544 46999999999999999999764222355566443 34667888886 478999999
Q ss_pred ccccccccc--------C--CCcEEEEeCCCC-------------------------CHHHHHHHHhhccCCCCC--CeE
Q 009048 316 VAFGMGIDR--------K--DVRLVCHFNIPK-------------------------SMEAFYQESGRAGRDQLP--SKS 358 (545)
Q Consensus 316 ~a~~~GiD~--------p--~v~~VI~~~~p~-------------------------s~~~y~Qr~GRagR~g~~--~~~ 358 (545)
..|.+|||+ | .++.||...+|. ..-.+.|-+||.-|.... --.
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~ 609 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRR 609 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceE
Confidence 999999999 2 388999888873 123456777888887654 344
Q ss_pred EEEeccc
Q 009048 359 LLYYGMD 365 (545)
Q Consensus 359 i~~~~~~ 365 (545)
+.++++.
T Consensus 610 i~ilD~R 616 (636)
T TIGR03117 610 IHMLDGR 616 (636)
T ss_pred EEEEeCC
Confidence 5555544
No 138
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.65 E-value=1e-14 Score=154.71 Aligned_cols=317 Identities=21% Similarity=0.199 Sum_probs=220.9
Q ss_pred CCHHHHHHHHHHH----cCCCEEEEcCCCchHHHH--HHHHHhc---CCCeEEEEcChHHHHHHHHHHHHHcCCceeEec
Q 009048 39 FRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMC--YQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (545)
Q Consensus 39 ~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~--~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~ 109 (545)
+.++|.-.++.+. .+-+.|+.-..|-|||.- ..+..|. ..|.-|||||.-.| ..|.+.+.++.-......
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl~Ve~ 478 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSLKVEP 478 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCceEEEe
Confidence 7889998887764 445778888999999942 1222222 36789999999877 689999999754444444
Q ss_pred ccccHHHHHHHHHhhhcCCCCccEEEECcccccChhh-HHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009048 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (545)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~-~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (545)
-..+..++..+...+..+.++++|+++|..++.+..- ...+. ..+++++|+||+|.+...+. .-|..|-.+.
T Consensus 479 YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk----~~~~n~viyDEgHmLKN~~S---eRy~~LM~I~ 551 (941)
T KOG0389|consen 479 YYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLK----NQKFNYVIYDEGHMLKNRTS---ERYKHLMSIN 551 (941)
T ss_pred ccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHH----hccccEEEecchhhhhccch---HHHHHhcccc
Confidence 4445578888888888888899999999998876432 22222 23489999999999987653 1234443333
Q ss_pred HhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC----------------------------------------
Q 009048 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---------------------------------------- 228 (545)
Q Consensus 189 ~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~---------------------------------------- 228 (545)
.-..++||+|+-.....+++..|.+--|.++..+..
T Consensus 552 ----An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 552 ----ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred ----ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 445799999987766666666555444433321100
Q ss_pred ------------------------------------------------CCc--ceeeee------------cccc-----
Q 009048 229 ------------------------------------------------RPN--LFYEVR------------YKDL----- 241 (545)
Q Consensus 229 ------------------------------------------------r~n--i~~~v~------------~~~~----- 241 (545)
+++ +....+ +.+.
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 000 000000 0000
Q ss_pred -------------h--------------------------------------hhHHHHHHHHHHh--CCCccEEEEecch
Q 009048 242 -------------L--------------------------------------DDAYADLCSVLKA--NGDTCAIVYCLER 268 (545)
Q Consensus 242 -------------~--------------------------------------~~~~~~l~~~l~~--~~~~~~IIf~~t~ 268 (545)
. ..++..|..+|.+ ..+.+++||-.-.
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 0 0112223333322 1346899999888
Q ss_pred hhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC--CcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHH
Q 009048 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (545)
Q Consensus 269 ~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~--~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~ 346 (545)
.-.+-|...|.-.++....+.|...-.+|+.++..|...+ .-.|++|-|.|.|||+-..++||.+|+..++-.-.|.-
T Consensus 788 qmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAE 867 (941)
T KOG0389|consen 788 QMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAE 867 (941)
T ss_pred HHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhH
Confidence 8888888899999999999999999999999999999654 34688999999999999999999999999999999999
Q ss_pred hhccCCCCCCeEE--EEeccccH
Q 009048 347 GRAGRDQLPSKSL--LYYGMDDR 367 (545)
Q Consensus 347 GRagR~g~~~~~i--~~~~~~d~ 367 (545)
-||.|.|+...+. -+++.+-.
T Consensus 868 DRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 868 DRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HHHHhhCCcceeEEEEEEecCcH
Confidence 9999999866544 44555543
No 139
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.62 E-value=2.4e-13 Score=149.23 Aligned_cols=290 Identities=15% Similarity=0.042 Sum_probs=188.1
Q ss_pred EEEcCCCchHHHHHHHHH---hcCCCeEEEEcChHHHHHHHHHHHHH-cC-CceeEecccccHHHHHHHHHhhhcCCCCc
Q 009048 57 FCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KG-IAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131 (545)
Q Consensus 57 lv~apTGsGKTl~~~lp~---l~~~~~~lVi~P~~aL~~qq~~~l~~-~g-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (545)
+..+.+|||||.+|+-.+ +..++.+||++|.++|..|.+.+|++ +| ..+..+++..+...+...+..+..+. .
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~--~ 241 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ--A 241 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC--C
Confidence 334446999999997433 56788999999999999999999997 55 67889999999999999998888775 7
Q ss_pred cEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHH
Q 009048 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210 (545)
Q Consensus 132 ~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~ 210 (545)
+|+++|---+..|- .++++|||||=|--+-... ..+..-+.+..++....++++|+-|||++-+....
T Consensus 242 ~IViGtRSAvFaP~-----------~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 242 RVVVGTRSAVFAPV-----------EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred cEEEEcceeEEecc-----------CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 89999887776653 4489999999997543211 12333467888899989999999999998876543
Q ss_pred HHHHhcCCCCeEE---eccCCCCcceeeeecc------------cchhhHHHHHHHHHHhCCCccEEEEecchh------
Q 009048 211 VMESLCLQNPLVL---KSSFNRPNLFYEVRYK------------DLLDDAYADLCSVLKANGDTCAIVYCLERT------ 269 (545)
Q Consensus 211 i~~~l~~~~~~~~---~~~~~r~ni~~~v~~~------------~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~------ 269 (545)
... +....... ......|.+...-... ......+..+.+.++ .+ ++|||.|.+-
T Consensus 311 ~~~--g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~--~g-qvll~lnRrGyap~l~ 385 (665)
T PRK14873 311 VES--GWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALE--HG-PVLVQVPRRGYVPSLA 385 (665)
T ss_pred Hhc--CcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHh--cC-cEEEEecCCCCCCeeE
Confidence 221 11110000 0011122222211100 011234444444444 23 7888888762
Q ss_pred -----------------------------------------------------hHHHHHHHHHhC--CCcEEEecCCCCH
Q 009048 270 -----------------------------------------------------TCDELSAYLSAG--GISCAAYHAGLND 294 (545)
Q Consensus 270 -----------------------------------------------------~~~~l~~~L~~~--g~~~~~~h~~l~~ 294 (545)
.++++++.|.+. +.++....
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d----- 460 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG----- 460 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC-----
Confidence 234444444432 22333222
Q ss_pred HHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCC------C------CHHHHHHHHhhccCCCCCCeEEEEe
Q 009048 295 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP------K------SMEAFYQESGRAGRDQLPSKSLLYY 362 (545)
Q Consensus 295 ~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p------~------s~~~y~Qr~GRagR~g~~~~~i~~~ 362 (545)
++.+++.|. ++.+|||+|..+..=+. +++..|+..|.- . ...-+.|-+||+||...+|..++.+
T Consensus 461 --~d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 461 --GDQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred --hHHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 234778886 59999999984332232 467888776632 2 3555688999999999999999887
Q ss_pred ccccHHHHHHHH
Q 009048 363 GMDDRRRMEFIL 374 (545)
Q Consensus 363 ~~~d~~~~~~i~ 374 (545)
.++. ..++.+.
T Consensus 537 ~p~~-~~~~~l~ 547 (665)
T PRK14873 537 ESSL-PTVQALI 547 (665)
T ss_pred CCCC-HHHHHHH
Confidence 6554 3344443
No 140
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.61 E-value=1.4e-14 Score=136.05 Aligned_cols=167 Identities=31% Similarity=0.391 Sum_probs=113.9
Q ss_pred cCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcC-----CCeEEEEcChHHHHHHHHHHHHHcC-----
Q 009048 34 FGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKG----- 102 (545)
Q Consensus 34 fg~~~~r~~Q~~~i~~il~g-~d~lv~apTGsGKTl~~~lp~l~~-----~~~~lVi~P~~aL~~qq~~~l~~~g----- 102 (545)
+++..++++|.+++..+..+ +.+++.+|||+|||.++..+++.. ...++|++|+.+++.++...+....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 57788999999999999998 999999999999999887776542 3679999999999999999998865
Q ss_pred CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHH
Q 009048 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (545)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~ 182 (545)
.....+.+..... ........ ...++++|++.+....... ......++++||||||.+..+. +...+.
T Consensus 84 ~~~~~~~~~~~~~----~~~~~~~~--~~~v~~~t~~~l~~~~~~~----~~~~~~~~~iIiDE~h~~~~~~--~~~~~~ 151 (201)
T smart00487 84 KVVGLYGGDSKRE----QLRKLESG--KTDILVTTPGRLLDLLEND----LLELSNVDLVILDEAHRLLDGG--FGDQLE 151 (201)
T ss_pred EEEEEeCCcchHH----HHHHHhcC--CCCEEEeChHHHHHHHHcC----CcCHhHCCEEEEECHHHHhcCC--cHHHHH
Confidence 2233333322221 12222222 2478888877554322110 0233447899999999998642 444443
Q ss_pred HHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHh
Q 009048 183 KLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (545)
Q Consensus 183 ~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l 215 (545)
.+ .... +..+++++|||++..........+
T Consensus 152 ~~---~~~~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 152 KL---LKLLPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred HH---HHhCCccceEEEEecCCchhHHHHHHHhc
Confidence 33 3333 578899999999877655444433
No 141
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.60 E-value=8.5e-13 Score=147.28 Aligned_cols=164 Identities=17% Similarity=0.162 Sum_probs=104.9
Q ss_pred EEEEEcCCChh-hHHHHHHHhcCCC---Ce--EEeccCCCCcc-eeeee---ccc-chh----hHHHHHHHHHHhCCCcc
Q 009048 196 ILALTATAAPK-VQKDVMESLCLQN---PL--VLKSSFNRPNL-FYEVR---YKD-LLD----DAYADLCSVLKANGDTC 260 (545)
Q Consensus 196 ~l~lTAT~~~~-~~~~i~~~l~~~~---~~--~~~~~~~r~ni-~~~v~---~~~-~~~----~~~~~l~~~l~~~~~~~ 260 (545)
+|++|||+++. ....+...+|+.. .. .+..+++..+- .+.+. +.. ... .....|.+++. .++ .
T Consensus 459 vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~~g-g 536 (697)
T PRK11747 459 AVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-KHK-G 536 (697)
T ss_pred EEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-cCC-C
Confidence 68889998863 3455667888863 22 23334433221 11111 011 111 22333444545 333 4
Q ss_pred EEEEecchhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHc----CCCcEEEeccccccccccCC--CcEEEEe
Q 009048 261 AIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVATVAFGMGIDRKD--VRLVCHF 333 (545)
Q Consensus 261 ~IIf~~t~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~----g~~~VLVaT~a~~~GiD~p~--v~~VI~~ 333 (545)
++|+++|.+..+.++..|... +.. ...++. ..|..+++.|++ |+..||++|..|.+|||+|+ ++.||..
T Consensus 537 ~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~ 612 (697)
T PRK11747 537 SLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIIT 612 (697)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEE
Confidence 899999999999999999753 433 444553 356778877774 67789999999999999986 7899998
Q ss_pred CCCC----C--------------------------HHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 334 NIPK----S--------------------------MEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 334 ~~p~----s--------------------------~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
.+|- + +-.+.|-+||.-|....--.+++.++.
T Consensus 613 kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 613 KIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 8774 1 123468889999987554456666654
No 142
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.59 E-value=4.9e-15 Score=118.92 Aligned_cols=81 Identities=35% Similarity=0.534 Sum_probs=77.8
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCC
Q 009048 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (545)
Q Consensus 273 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 352 (545)
.+++.|...++.+..+||++++++|..+++.|.++...|||+|+++++|+|+|+++.||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 009048 353 Q 353 (545)
Q Consensus 353 g 353 (545)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 143
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.58 E-value=5.7e-13 Score=149.21 Aligned_cols=167 Identities=20% Similarity=0.188 Sum_probs=108.9
Q ss_pred CEEEEEcCCChhh-HHHHHHHhcCCCCe-E--EeccCCCCcceeeeecc--------cchhhHHHHHHHHHHhCCCccEE
Q 009048 195 PILALTATAAPKV-QKDVMESLCLQNPL-V--LKSSFNRPNLFYEVRYK--------DLLDDAYADLCSVLKANGDTCAI 262 (545)
Q Consensus 195 ~~l~lTAT~~~~~-~~~i~~~l~~~~~~-~--~~~~~~r~ni~~~v~~~--------~~~~~~~~~l~~~l~~~~~~~~I 262 (545)
.+|++|||+.+.. ...+...+++.... . +..+++........... ....+....+..++...++ .++
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 483 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKASPG-GVL 483 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhcCC-CEE
Confidence 3789999988753 34455555555443 1 11222222211111111 1122334445555555554 799
Q ss_pred EEecchhhHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHHHcCCC-cEEEeccccccccccCC--CcEEEEeCCCC-
Q 009048 263 VYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKD--VRLVCHFNIPK- 337 (545)
Q Consensus 263 If~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~f~~g~~-~VLVaT~a~~~GiD~p~--v~~VI~~~~p~- 337 (545)
||++|.+..+.+++.+...... ....+|..+. ..+++.|..+.- .++|+|..|.+|||+|+ .+.||..++|-
T Consensus 484 vlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp 560 (654)
T COG1199 484 VLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFP 560 (654)
T ss_pred EEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCC
Confidence 9999999999999999886542 4555665544 377888886544 89999999999999997 47888888775
Q ss_pred -----------------------------CHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 338 -----------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 338 -----------------------------s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
.+....|.+||+-|.-..--.+++++..
T Consensus 561 ~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 561 NPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 3456699999999976555555566554
No 144
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.56 E-value=3.2e-15 Score=139.43 Aligned_cols=158 Identities=25% Similarity=0.271 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHc-------CCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecc
Q 009048 38 QFRDKQLDAIQAVLS-------GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~-------g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~ 110 (545)
+||++|.+++..+.. .+.+++.||||+|||.++...+......++|++|+.+|+.|+.+.+..++........
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 489999999999884 5789999999999999877444332229999999999999999999664432221110
Q ss_pred ccc-----H----HHHHHHHHhhhcCCCCccEEEECcccccChhhHHH-------HHhhhccCCccEEEEeccccccccC
Q 009048 111 TQT-----M----QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-------LKKIHSRGLLNLVAIDEAHCISSWG 174 (545)
Q Consensus 111 ~~~-----~----~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~-------l~~~~~~~~l~~iViDEaH~i~~~g 174 (545)
... . ..................+++.+...+........ ..........++||+||||+...-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~- 161 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSD- 161 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHH-
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCH-
Confidence 000 0 00000000011122345677776665543221100 001122334789999999997641
Q ss_pred CCCHHHHHHHHHHHHhCCCcCEEEEEcCCC
Q 009048 175 HDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (545)
Q Consensus 175 ~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~ 204 (545)
..|..+ .. ++...+|+||||+.
T Consensus 162 ----~~~~~i---~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 162 ----SSYREI---IE-FKAAFILGLTATPF 183 (184)
T ss_dssp ----HHHHHH---HH-SSCCEEEEEESS-S
T ss_pred ----HHHHHH---Hc-CCCCeEEEEEeCcc
Confidence 113333 33 67888999999985
No 145
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.55 E-value=1.5e-13 Score=139.03 Aligned_cols=305 Identities=15% Similarity=0.128 Sum_probs=189.7
Q ss_pred CCCCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHH-h-cCCCeEEEEcChHHHHHHHHHHHHHc-CC--ceeEecc
Q 009048 37 AQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPA-L-AKPGIVLVVSPLIALMENQVIGLKEK-GI--AGEFLSS 110 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il-~g~d~lv~apTGsGKTl~~~lp~-l-~~~~~~lVi~P~~aL~~qq~~~l~~~-gi--~~~~~~~ 110 (545)
+.+-|+|++.+...+ .|..+|+.-..|-|||+-++.-| . ......|||+|..-+ -.|.++|..+ +. ++.....
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPAsvr-ftWa~al~r~lps~~pi~vv~~ 275 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPASVR-FTWAKALNRFLPSIHPIFVVDK 275 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecHHHh-HHHHHHHHHhcccccceEEEec
Confidence 568899999776655 67788999999999998665333 2 346789999998555 5788888874 21 1001111
Q ss_pred cccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHh
Q 009048 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (545)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~ 190 (545)
... .+..-...-.+.+++.|++. .+......+.++++|+||.|.+..-- .-| ......+.+.
T Consensus 276 ~~D---------~~~~~~t~~~v~ivSye~ls------~l~~~l~~~~~~vvI~DEsH~Lk~sk-tkr--~Ka~~dllk~ 337 (689)
T KOG1000|consen 276 SSD---------PLPDVCTSNTVAIVSYEQLS------LLHDILKKEKYRVVIFDESHMLKDSK-TKR--TKAATDLLKV 337 (689)
T ss_pred ccC---------CccccccCCeEEEEEHHHHH------HHHHHHhcccceEEEEechhhhhccc-hhh--hhhhhhHHHH
Confidence 100 00000011345555555443 34444445568999999999986521 111 0111111111
Q ss_pred CCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEE----------------------e------------------------
Q 009048 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVL----------------------K------------------------ 224 (545)
Q Consensus 191 ~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~----------------------~------------------------ 224 (545)
-..+|+||+|+.-.--.++...+..-++.++ .
T Consensus 338 --akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~d 415 (689)
T KOG1000|consen 338 --AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKAD 415 (689)
T ss_pred --hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999742111111111111000000 0
Q ss_pred ----ccCCCCcceeeeecccc---------------------------------hhhHHHHHHHHHHh------CCCccE
Q 009048 225 ----SSFNRPNLFYEVRYKDL---------------------------------LDDAYADLCSVLKA------NGDTCA 261 (545)
Q Consensus 225 ----~~~~r~ni~~~v~~~~~---------------------------------~~~~~~~l~~~l~~------~~~~~~ 261 (545)
.+..|..+.|....... ...++..+.+++.. .++.+.
T Consensus 416 vL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kf 495 (689)
T KOG1000|consen 416 VLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKF 495 (689)
T ss_pred HHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceE
Confidence 00011111111000000 00112223333333 356789
Q ss_pred EEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc-CCCcE-EEeccccccccccCCCcEEEEeCCCCCH
Q 009048 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS-SRKQV-VVATVAFGMGIDRKDVRLVCHFNIPKSM 339 (545)
Q Consensus 262 IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~V-LVaT~a~~~GiD~p~v~~VI~~~~p~s~ 339 (545)
+|||......+.+...+.+++++...+.|..++.+|....+.|+. .++.| +++-.|.|+|+++...+.|+...+++++
T Consensus 496 lVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnP 575 (689)
T KOG1000|consen 496 LVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNP 575 (689)
T ss_pred EEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCC
Confidence 999999999999999999999999999999999999999999995 45555 4456689999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCeEEEEe
Q 009048 340 EAFYQESGRAGRDQLPSKSLLYY 362 (545)
Q Consensus 340 ~~y~Qr~GRagR~g~~~~~i~~~ 362 (545)
.-.+|.--|+.|-|+.+.+.++|
T Consensus 576 gvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 576 GVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred ceEEechhhhhhccccceeeEEE
Confidence 99999999999999988766655
No 146
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=2.2e-12 Score=145.02 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=59.7
Q ss_pred hcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHhc----CC--CeEEEEcChHHHHHHHHHHHHHc
Q 009048 33 HFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA----KP--GIVLVVSPLIALMENQVIGLKEK 101 (545)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l~----~~--~~~lVi~P~~aL~~qq~~~l~~~ 101 (545)
.|.|..+||.|.+.+..+. .++++++.+|||+|||++.+.|++. .+ .++++.+.|.+=+.|.++.|++.
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 5899999999999876654 6789999999999999999988884 23 57999999999999999999883
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=99.53 E-value=5.1e-14 Score=150.18 Aligned_cols=334 Identities=18% Similarity=0.210 Sum_probs=186.1
Q ss_pred cccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC----CCEEEEcCCCchHHHHHHH-HHhcCCCeEEEEcC
Q 009048 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQI-PALAKPGIVLVVSP 86 (545)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g----~d~lv~apTGsGKTl~~~l-p~l~~~~~~lVi~P 86 (545)
++...|+.+.+ .+++..|.- -.-..|||+|..||++..+| ...=++|.+|+|||+..+- .--....++|+++|
T Consensus 137 es~IDW~~f~p-~e~~~nl~l-~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvP 214 (1518)
T COG4889 137 ESPIDWDIFDP-TELQDNLPL-KKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVP 214 (1518)
T ss_pred cCCCChhhcCc-ccccccccc-CCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecc
Confidence 34556665555 344443332 12356999999999999876 2345778899999988762 22223378999999
Q ss_pred hHHHHHHHHHHHHH---cCCceeEecccccHHH-----------------HHHHHHhhh--cCCCCccEEEECcccccCh
Q 009048 87 LIALMENQVIGLKE---KGIAGEFLSSTQTMQV-----------------KTKIYEDLD--SGKPSLRLLYVTPELTATP 144 (545)
Q Consensus 87 ~~aL~~qq~~~l~~---~gi~~~~~~~~~~~~~-----------------~~~~~~~~~--~~~~~~~il~~tpe~~~t~ 144 (545)
+++|..|..+.+.. +.+.+..+++...... ...+..... ....+.-+++.|...+-+-
T Consensus 215 SIsLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i 294 (1518)
T COG4889 215 SISLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRI 294 (1518)
T ss_pred hHHHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHH
Confidence 99999999998875 4455555544332111 011111111 1122355666766544321
Q ss_pred hhHHHHHhhhccCCccEEEEeccccccc---cCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh---HH---H-HHHH
Q 009048 145 GFMSKLKKIHSRGLLNLVAIDEAHCISS---WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV---QK---D-VMES 214 (545)
Q Consensus 145 ~~~~~l~~~~~~~~l~~iViDEaH~i~~---~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~---~~---~-i~~~ 214 (545)
+ . ........+++||.||||+-.. -|.| ...+.++.. -......+.+.+|||+.--. .. + -...
T Consensus 295 ~---e-AQe~G~~~fDliicDEAHRTtGa~~a~dd-~saFt~vHs-~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l 368 (1518)
T COG4889 295 K---E-AQEAGLDEFDLIICDEAHRTTGATLAGDD-KSAFTRVHS-DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAEL 368 (1518)
T ss_pred H---H-HHHcCCCCccEEEecchhccccceecccC-cccceeecC-cchhHHHHhhhcccCchhhchhhhhhhhhcccee
Confidence 1 1 1122356699999999998642 1111 001111000 00001234578899863210 00 0 0001
Q ss_pred hcCCCCeEEeccCCCCcc----------eeeeecc-----------------cchhhHHHHHHH-------HHHhC----
Q 009048 215 LCLQNPLVLKSSFNRPNL----------FYEVRYK-----------------DLLDDAYADLCS-------VLKAN---- 256 (545)
Q Consensus 215 l~~~~~~~~~~~~~r~ni----------~~~v~~~-----------------~~~~~~~~~l~~-------~l~~~---- 256 (545)
..|.+..++...+.|-+. .|.|... ....-.+..... +.+..
T Consensus 369 ~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n 448 (1518)
T COG4889 369 SSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDN 448 (1518)
T ss_pred eccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccc
Confidence 112222222222221111 0111100 000001111111 11111
Q ss_pred ----------CCccEEEEecchhhHHHHHHHHHh-------------CCCc--EEEecCCCCHHHHHHHHHH---HHcCC
Q 009048 257 ----------GDTCAIVYCLERTTCDELSAYLSA-------------GGIS--CAAYHAGLNDKARSSVLDD---WISSR 308 (545)
Q Consensus 257 ----------~~~~~IIf~~t~~~~~~l~~~L~~-------------~g~~--~~~~h~~l~~~~R~~~~~~---f~~g~ 308 (545)
+.++.|-||.++++..++++.+.. .++. +-...|.|+..+|...+.. |...+
T Consensus 449 ~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~ne 528 (1518)
T COG4889 449 DLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNE 528 (1518)
T ss_pred cccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcch
Confidence 123579999999888888766542 2333 4456678999998544332 34567
Q ss_pred CcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCC
Q 009048 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (545)
Q Consensus 309 ~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g 353 (545)
++||--...+++|||+|..+.||.+++-.|+.+.+|.+||..|..
T Consensus 529 ckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 529 CKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred heeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 889988889999999999999999999999999999999999964
No 148
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=5.7e-12 Score=139.56 Aligned_cols=123 Identities=23% Similarity=0.218 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccccc
Q 009048 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (545)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~ 320 (545)
..++..+.+.+.. ..+.|+||-+.|++..+.|+..|.+.|++...+++.....+-.-+-+.=+ .-.|-|||+++||
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAGR 688 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAGR 688 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcCC
Confidence 3556666655543 35779999999999999999999999999878888765555444433322 3358999999999
Q ss_pred ccccC--------CCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccH
Q 009048 321 GIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (545)
Q Consensus 321 GiD~p--------~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~ 367 (545)
|.|+. +==+||-...+.|..---|-.||+||.|.||.+..|++.+|-
T Consensus 689 GTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 689 GTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99987 235899999999999999999999999999999999998874
No 149
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.49 E-value=1.1e-12 Score=145.00 Aligned_cols=311 Identities=19% Similarity=0.251 Sum_probs=205.5
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcC--CCeEEEEcChHHHHHHHHHHHHH-----cCCceeEec
Q 009048 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--PGIVLVVSPLIALMENQVIGLKE-----KGIAGEFLS 109 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g-~d~lv~apTGsGKTl~~~lp~l~~--~~~~lVi~P~~aL~~qq~~~l~~-----~gi~~~~~~ 109 (545)
.+.|+|.++++.+.+. .++++.+|+|||||.|+.+..+.. .++++++.|.-+.+..+...+.+ .|.....+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 4588999999998865 468999999999999998888764 46899999999988777666654 355566666
Q ss_pred ccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccccc-CCCCHHHHHHHHHHH
Q 009048 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW-GHDFRPSYRKLSSLR 188 (545)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~-g~~fr~~~~~l~~l~ 188 (545)
+..+...+... .-++++.|||.... +. ....++++|+||+|.+..- |.-+.-... +..+.
T Consensus 1223 ge~s~~lkl~~---------~~~vii~tpe~~d~------lq---~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia 1283 (1674)
T KOG0951|consen 1223 GETSLDLKLLQ---------KGQVIISTPEQWDL------LQ---SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIA 1283 (1674)
T ss_pred CccccchHHhh---------hcceEEechhHHHH------Hh---hhhhcceEeeehhhhhcccCCceEEEEee-HHHHH
Confidence 55554433211 24677777775532 22 2334899999999998742 221111111 22222
Q ss_pred HhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC-CCc-ceeeeeccc--c--------hhhHHHHHHHHHHh
Q 009048 189 NYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPN-LFYEVRYKD--L--------LDDAYADLCSVLKA 255 (545)
Q Consensus 189 ~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~-r~n-i~~~v~~~~--~--------~~~~~~~l~~~l~~ 255 (545)
.++ .++++++||..++.. +++ +|.....++..+++ ||+ +...+...+ . ....+..+.....
T Consensus 1284 ~q~~k~ir~v~ls~~lana--~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~- 1357 (1674)
T KOG0951|consen 1284 SQLEKKIRVVALSSSLANA--RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAG- 1357 (1674)
T ss_pred HHHHhheeEEEeehhhccc--hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhc-
Confidence 222 378899999887664 233 66666666655443 332 112222111 1 1123334444332
Q ss_pred CCCccEEEEecchhhHHHHHHHHHh----------------------CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Q 009048 256 NGDTCAIVYCLERTTCDELSAYLSA----------------------GGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (545)
Q Consensus 256 ~~~~~~IIf~~t~~~~~~l~~~L~~----------------------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLV 313 (545)
.++++|||+++++.|..++.-|-. ...+...=|-+++..+..-+..-|..|.++|+|
T Consensus 1358 -~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v 1436 (1674)
T KOG0951|consen 1358 -NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCV 1436 (1674)
T ss_pred -CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEE
Confidence 456899999999999887754321 011122228899999999999999999999999
Q ss_pred eccccccccccCCCcEEEEeC-----------CCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhccc
Q 009048 314 ATVAFGMGIDRKDVRLVCHFN-----------IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (545)
Q Consensus 314 aT~a~~~GiD~p~v~~VI~~~-----------~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~ 379 (545)
...- .+|+-.. ...||..+ .+.++.+..|+.|+|.| .|.|+++....+....+.++.+..+
T Consensus 1437 ~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1437 MSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred EEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCc
Confidence 8877 8887654 34455333 46689999999999998 5689999999988888777765443
No 150
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.48 E-value=3.4e-13 Score=146.40 Aligned_cols=323 Identities=20% Similarity=0.199 Sum_probs=228.7
Q ss_pred CCCHHHHHHHHHHH---cCC-CEEEEcCCCchHHH------HHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeE
Q 009048 38 QFRDKQLDAIQAVL---SGR-DCFCLMPTGGGKSM------CYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (545)
Q Consensus 38 ~~r~~Q~~~i~~il---~g~-d~lv~apTGsGKTl------~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~ 107 (545)
.++++|...++.+. +++ +.|+.-.+|-|||. +|++-.....|+-+||+|+-.|. .|...+....-.+..
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~-NW~~Ef~kWaPSv~~ 472 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLV-NWSSEFPKWAPSVQK 472 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccC-Cchhhccccccceee
Confidence 68999999998876 333 67888899999995 34444445578999999999986 567777666555666
Q ss_pred ecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 009048 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (545)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l 187 (545)
+....+...+..+...+..+ .+.||.+|.|.+..+.- .|.++. +.++||||.|+|..-- .+|...
T Consensus 473 i~YkGtp~~R~~l~~qir~g--KFnVLlTtyEyiikdk~--lLsKI~----W~yMIIDEGHRmKNa~-------~KLt~~ 537 (1157)
T KOG0386|consen 473 IQYKGTPQQRSGLTKQQRHG--KFNVLLTTYEYIIKDKA--LLSKIS----WKYMIIDEGHRMKNAI-------CKLTDT 537 (1157)
T ss_pred eeeeCCHHHHhhHHHHHhcc--cceeeeeeHHHhcCCHH--HHhccC----Ccceeecccccccchh-------hHHHHH
Confidence 66677788888888887775 48999999997765331 123332 7789999999987621 445444
Q ss_pred HH-hCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc------CCC----------------------------Ccc
Q 009048 188 RN-YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FNR----------------------------PNL 232 (545)
Q Consensus 188 ~~-~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~------~~r----------------------------~ni 232 (545)
.. .+.....+++|+|+-.....+++..|++--|.++.+. |+. |.+
T Consensus 538 L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFl 617 (1157)
T KOG0386|consen 538 LNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFL 617 (1157)
T ss_pred hhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHH
Confidence 44 4455667999999887777777777766655554311 100 000
Q ss_pred -----------------------------------------------------------------------eeee----e
Q 009048 233 -----------------------------------------------------------------------FYEV----R 237 (545)
Q Consensus 233 -----------------------------------------------------------------------~~~v----~ 237 (545)
+-.+ .
T Consensus 618 LRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~ 697 (1157)
T KOG0386|consen 618 LRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYT 697 (1157)
T ss_pred HHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccc
Confidence 0000 0
Q ss_pred cccc------hhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC-
Q 009048 238 YKDL------LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR- 308 (545)
Q Consensus 238 ~~~~------~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~- 308 (545)
.... ...+++.|..++.+ ..++.++.||.-..-...+..+|.-.++....+.|....++|...++.|..-.
T Consensus 698 ~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds 777 (1157)
T KOG0386|consen 698 LHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDS 777 (1157)
T ss_pred cccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCC
Confidence 0000 00122222222221 23567899988888888888888888889999999999999999999998533
Q ss_pred --CcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHh
Q 009048 309 --KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (545)
Q Consensus 309 --~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~ 376 (545)
...|.+|-+.|.|+|+...+.||.||.-+++-...|+--||.|-|+...+.++....-...-+.|++.
T Consensus 778 ~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 778 PYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred ceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999998888877654443444444443
No 151
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.40 E-value=2e-12 Score=114.17 Aligned_cols=136 Identities=29% Similarity=0.305 Sum_probs=89.1
Q ss_pred CCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEEcChHHHHHHHHHHHHHcC---CceeEecccccHHHHHHHHHhhh
Q 009048 54 RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLD 125 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~-----~~~~~lVi~P~~aL~~qq~~~l~~~g---i~~~~~~~~~~~~~~~~~~~~~~ 125 (545)
+.+++.+|||+|||..+...+.. ..+.++|++|+.+++.++.+.+.... +................
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 74 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEK------ 74 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHH------
Confidence 46899999999999887765543 35789999999999999998887754 55555555443333221
Q ss_pred cCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCC
Q 009048 126 SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (545)
Q Consensus 126 ~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~ 203 (545)
.......++++|++.+..... ........++++||||+|.+..-. +.... ........+..+++++|||+
T Consensus 75 ~~~~~~~i~i~t~~~~~~~~~----~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLDELE----RLKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HhcCCCCEEEECcHHHHHHHH----cCCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHHhhCCccceEEEEeccC
Confidence 111246788888876542111 111123458899999999987632 22111 12234445688999999996
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.34 E-value=9.3e-11 Score=130.70 Aligned_cols=91 Identities=25% Similarity=0.255 Sum_probs=71.3
Q ss_pred EEEEecchhhHHHHHHHHHhC----C--CcEEEecCCCCHHHHHHHHHHH----------------------Hc----CC
Q 009048 261 AIVYCLERTTCDELSAYLSAG----G--ISCAAYHAGLNDKARSSVLDDW----------------------IS----SR 308 (545)
Q Consensus 261 ~IIf~~t~~~~~~l~~~L~~~----g--~~~~~~h~~l~~~~R~~~~~~f----------------------~~----g~ 308 (545)
++|-+++++.+-.+|..|... + +....||+...-..|..+.+.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 688889999888888888754 2 3478899999888887665443 11 46
Q ss_pred CcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCC
Q 009048 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (545)
Q Consensus 309 ~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 354 (545)
..|+|+|++.+.|+|+ |.+++ +.-|.++...+|++||+.|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~--~~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWA--IADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCee--eeccCcHHHHHHHhhccccccc
Confidence 7899999999999997 35544 3457789999999999999885
No 153
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.34 E-value=8.9e-11 Score=129.92 Aligned_cols=302 Identities=17% Similarity=0.142 Sum_probs=193.5
Q ss_pred CCCHHHHHHHHHHH--c--CCCEEEEcCCCchHHHHHH-HHH---hcC--------CCeEEEEcChHHHHHHHHHHHHHc
Q 009048 38 QFRDKQLDAIQAVL--S--GRDCFCLMPTGGGKSMCYQ-IPA---LAK--------PGIVLVVSPLIALMENQVIGLKEK 101 (545)
Q Consensus 38 ~~r~~Q~~~i~~il--~--g~d~lv~apTGsGKTl~~~-lp~---l~~--------~~~~lVi~P~~aL~~qq~~~l~~~ 101 (545)
.+|.+|.+.++.+. + +-+.|++-..|-|||+--+ +-| ..+ ....|||||. .|.-.|...+.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 57889999887754 2 3478999999999997432 111 122 2348999997 5777888888886
Q ss_pred CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHH
Q 009048 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (545)
Q Consensus 102 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~ 181 (545)
--....+.--.....+....... .+..|++++++.+...- ..+.+. .+.++|+||-|-|.. .-
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~----~~~~iiVtSYDv~RnD~--d~l~~~----~wNYcVLDEGHVikN-------~k 1116 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQY----KNANIIVTSYDVVRNDV--DYLIKI----DWNYCVLDEGHVIKN-------SK 1116 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhc----cccceEEeeHHHHHHHH--HHHHhc----ccceEEecCcceecc-------hH
Confidence 32211122222233333333222 23578888888775421 112222 278999999998754 22
Q ss_pred HHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEe------ccCC---------------------------
Q 009048 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK------SSFN--------------------------- 228 (545)
Q Consensus 182 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~------~~~~--------------------------- 228 (545)
.++.+..+.+..-..+.||+|+-.+...+++..+.+--|-.+. ..+-
T Consensus 1117 tkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLH 1196 (1549)
T KOG0392|consen 1117 TKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALH 1196 (1549)
T ss_pred HHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHH
Confidence 5555555555566689999998765555555443322221110 0000
Q ss_pred -------------------CCcc-------------------------------------------------eeeeec--
Q 009048 229 -------------------RPNL-------------------------------------------------FYEVRY-- 238 (545)
Q Consensus 229 -------------------r~ni-------------------------------------------------~~~v~~-- 238 (545)
.|-+ .|-...
T Consensus 1197 KqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1197 KQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcC
Confidence 0000 000000
Q ss_pred ------cc---c-------------------hhhHHHHHHHHHHhC----------------CCccEEEEecchhhHHHH
Q 009048 239 ------KD---L-------------------LDDAYADLCSVLKAN----------------GDTCAIVYCLERTTCDEL 274 (545)
Q Consensus 239 ------~~---~-------------------~~~~~~~l~~~l~~~----------------~~~~~IIf~~t~~~~~~l 274 (545)
.+ . ...++..|.+++... ...+++|||.-+...+-+
T Consensus 1277 HpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlV 1356 (1549)
T KOG0392|consen 1277 HPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLV 1356 (1549)
T ss_pred CcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHH
Confidence 00 0 001233344444321 235799999999999999
Q ss_pred HHHHHhCCC-cE--EEecCCCCHHHHHHHHHHHHcC-CCcEE-EeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhc
Q 009048 275 SAYLSAGGI-SC--AAYHAGLNDKARSSVLDDWISS-RKQVV-VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 349 (545)
Q Consensus 275 ~~~L~~~g~-~~--~~~h~~l~~~~R~~~~~~f~~g-~~~VL-VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRa 349 (545)
.+-|-+.-. ++ ..+.|..++.+|.++.++|.++ .++|| .+|-+.|-|+|+-+.+.||.+.--+++-.-+|.+-||
T Consensus 1357 ekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1357 EKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred HHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 888866533 33 3688999999999999999998 78876 5677999999999999999999999999999999999
Q ss_pred cCCCCCCe
Q 009048 350 GRDQLPSK 357 (545)
Q Consensus 350 gR~g~~~~ 357 (545)
.|-|++-.
T Consensus 1437 HRIGQKrv 1444 (1549)
T KOG0392|consen 1437 HRIGQKRV 1444 (1549)
T ss_pred HhhcCcee
Confidence 99997654
No 154
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.24 E-value=9.2e-10 Score=115.88 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=91.8
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC-CcEEEeccccccccccCCCcEEEEeCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKDVRLVCHFNI 335 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~VLVaT~a~~~GiD~p~v~~VI~~~~ 335 (545)
.+.++++|+.-.+-.+-+.++|..+|+....+.|.....+|..+..+|+..+ .-.|++|.|.|.||++...+.||.|+.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 3456788887778888888888888999999999999999999999999754 456889999999999999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCeEEEE
Q 009048 336 PKSMEAFYQESGRAGRDQLPSKSLLY 361 (545)
Q Consensus 336 p~s~~~y~Qr~GRagR~g~~~~~i~~ 361 (545)
.+++..-.|...||.|-|+--.+.+|
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred CCCcchhhHHHHHHHhccCccceeee
Confidence 99999999999999999986654444
No 155
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.14 E-value=6.7e-09 Score=114.04 Aligned_cols=323 Identities=20% Similarity=0.168 Sum_probs=194.2
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHH----HH
Q 009048 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGL----KE 100 (545)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l----~~ 100 (545)
.+-++.+|. +|+=.+.+-.+.-....++.|.||-|||++..+|+.. .+.-+.||+..--||.--...+ .-
T Consensus 71 Ea~~Rvlg~---~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~ 147 (822)
T COG0653 71 EASKRVLGM---RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEF 147 (822)
T ss_pred HHHHHhcCC---ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHH
Confidence 444555564 4444666666666677799999999999999999864 3556778887777776433333 33
Q ss_pred cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHH---HhhhccCCccEEEEecccccc------
Q 009048 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS------ 171 (545)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~------ 171 (545)
+|+.+....++.....+...+. .+|.|+|.--+.-.-....+ ........+.+.||||++.+.
T Consensus 148 LGlsvG~~~~~m~~~ek~~aY~--------~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARt 219 (822)
T COG0653 148 LGLSVGVILAGMSPEEKRAAYA--------CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEART 219 (822)
T ss_pred cCCceeeccCCCChHHHHHHHh--------cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccc
Confidence 7999999998988888877664 67888887655443222222 111122347788888888763
Q ss_pred ----ccCCCCH-HHHHHHHHHHHhCC---------CcCEEEEEcC-----------------------------------
Q 009048 172 ----SWGHDFR-PSYRKLSSLRNYLP---------DVPILALTAT----------------------------------- 202 (545)
Q Consensus 172 ----~~g~~fr-~~~~~l~~l~~~~~---------~~~~l~lTAT----------------------------------- 202 (545)
+|...++ ..|..+..+...+. ..+.+.||-.
T Consensus 220 PLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l 299 (822)
T COG0653 220 PLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHIL 299 (822)
T ss_pred ceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHH
Confidence 3422221 33555444443321 1112222211
Q ss_pred --------------------------------------------------------------------------CChhhH
Q 009048 203 --------------------------------------------------------------------------AAPKVQ 208 (545)
Q Consensus 203 --------------------------------------------------------------------------~~~~~~ 208 (545)
+..+.
T Consensus 300 ~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~- 378 (822)
T COG0653 300 FFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEE- 378 (822)
T ss_pred hhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhh-
Confidence 10000
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcceeeeecc--cchhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCCCc
Q 009048 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (545)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~--~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g~~ 284 (545)
.....+.+-.++..+.++|.+....... .....++..+...+.. ..++|+||-+.+++..+.+.+.|.+.|++
T Consensus 379 ---~EF~~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~ 455 (822)
T COG0653 379 ---EEFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIP 455 (822)
T ss_pred ---hhhhhccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCC
Confidence 0000001111222233344332211111 1123455555555433 35679999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCc-----------EEEEeCCCCCHHHHHHHHhhccCCC
Q 009048 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR-----------LVCHFNIPKSMEAFYQESGRAGRDQ 353 (545)
Q Consensus 285 ~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~-----------~VI~~~~p~s~~~y~Qr~GRagR~g 353 (545)
-..+.+.-...+-..+.+.-. .--|-|||+++|+|-|+.=-. +||-..--.|-.---|--||+||.|
T Consensus 456 h~VLNAk~h~~EA~Iia~AG~--~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 456 HNVLNAKNHAREAEIIAQAGQ--PGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred ceeeccccHHHHHHHHhhcCC--CCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 877777666444333333322 234779999999999975222 3444444445555568899999999
Q ss_pred CCCeEEEEeccccH
Q 009048 354 LPSKSLLYYGMDDR 367 (545)
Q Consensus 354 ~~~~~i~~~~~~d~ 367 (545)
-||.+..|++-+|.
T Consensus 534 DpG~S~F~lSleD~ 547 (822)
T COG0653 534 DPGSSRFYLSLEDD 547 (822)
T ss_pred CcchhhhhhhhHHH
Confidence 99999988887663
No 156
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.08 E-value=5.9e-09 Score=106.06 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=86.0
Q ss_pred cEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC-CCc-EEEeccccccccccCCCcEEEEeCCCC
Q 009048 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVAFGMGIDRKDVRLVCHFNIPK 337 (545)
Q Consensus 260 ~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-VLVaT~a~~~GiD~p~v~~VI~~~~p~ 337 (545)
+.|||.....-.+-+.-.|.+.|++|+.+-|+|++..|...++.|++. .+. .|++-.|.|..+|+-...+|+.+|+=+
T Consensus 640 KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWW 719 (791)
T KOG1002|consen 640 KSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWW 719 (791)
T ss_pred hhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccc
Confidence 456666555556666666777899999999999999999999999975 344 467778899999999999999999989
Q ss_pred CHHHHHHHHhhccCCCC--CCeEEEEeccc
Q 009048 338 SMEAFYQESGRAGRDQL--PSKSLLYYGMD 365 (545)
Q Consensus 338 s~~~y~Qr~GRagR~g~--~~~~i~~~~~~ 365 (545)
+++---|...|..|-|+ |-..+.|+-..
T Consensus 720 NpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 720 NPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 99999999999999987 44566666444
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.05 E-value=2.4e-08 Score=109.17 Aligned_cols=281 Identities=16% Similarity=0.189 Sum_probs=167.5
Q ss_pred CEEEEcCCCchHHHHHHHHHh----cCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCC
Q 009048 55 DCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS 130 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~l----~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (545)
-.++.+|.|+|||.+..-+.- .....+++|+-.++|+.+...+++..++............ ...+ ..
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~--------~i~~-~~ 121 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDY--------IIDG-RP 121 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccc--------cccc-cc
Confidence 458899999999976443332 2468899999999999999999998776422221111100 0000 01
Q ss_pred ccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHH-------HHHHHHHHHHhCCCcCEEEEEcCC
Q 009048 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP-------SYRKLSSLRNYLPDVPILALTATA 203 (545)
Q Consensus 131 ~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~-------~~~~l~~l~~~~~~~~~l~lTAT~ 203 (545)
.+-+.+..+.+- ++.. ...+.+++|||||+-.+.. +=|-+ .+..+..+... ...+|++-||+
T Consensus 122 ~~rLivqIdSL~------R~~~-~~l~~yDvVIIDEv~svL~--qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~l 190 (824)
T PF02399_consen 122 YDRLIVQIDSLH------RLDG-SLLDRYDVVIIDEVMSVLN--QLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADL 190 (824)
T ss_pred cCeEEEEehhhh------hccc-ccccccCEEEEehHHHHHH--HHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCC
Confidence 334444444331 1111 1133489999999976543 11222 22333334433 45589999999
Q ss_pred ChhhHHHHHHHhcCCCCe-EEeccCCCCcc-----ee-----------eeecc-----------------------cchh
Q 009048 204 APKVQKDVMESLCLQNPL-VLKSSFNRPNL-----FY-----------EVRYK-----------------------DLLD 243 (545)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~-~~~~~~~r~ni-----~~-----------~v~~~-----------------------~~~~ 243 (545)
.....+-+.. +.-.... ++...+..++. .. ..... ....
T Consensus 191 n~~tvdFl~~-~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (824)
T PF02399_consen 191 NDQTVDFLAS-CRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDET 269 (824)
T ss_pred CHHHHHHHHH-hCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchh
Confidence 9988765444 4333332 22222111110 00 00000 0001
Q ss_pred hHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccc
Q 009048 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (545)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD 323 (545)
.-+..|..-|. .+.++-||++|...++.+++.....+.++..++|.-+..+ + +.| ++++|++=|++...|++
T Consensus 270 tF~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~S 341 (824)
T PF02399_consen 270 TFFSELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLS 341 (824)
T ss_pred hHHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEec
Confidence 22333333333 3556889999999999999999988889999988766653 2 334 67899999999999999
Q ss_pred cCCCcE--EEEeCCC----CCHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 324 RKDVRL--VCHFNIP----KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 324 ~p~v~~--VI~~~~p----~s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
+....+ +.-|=-| .++.+.+|.+||.-.-. ..+.+++++..
T Consensus 342 f~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 342 FEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred cchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 865433 3333222 35667899999995444 67788888765
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.02 E-value=2.1e-08 Score=106.13 Aligned_cols=90 Identities=13% Similarity=0.150 Sum_probs=77.0
Q ss_pred HHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHH--cCCCcEE-EeccccccccccCCCcEEEEeCCCCCHHHHHHHHhh
Q 009048 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI--SSRKQVV-VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGR 348 (545)
Q Consensus 272 ~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~--~g~~~VL-VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GR 348 (545)
.-+...|.+.|.....+||....++|..+++.|. +|..+|+ +.=.+-|.|+|+-...|+|..|+-+++.---|..-|
T Consensus 760 niv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDR 839 (901)
T KOG4439|consen 760 NIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDR 839 (901)
T ss_pred HHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHH
Confidence 3344566677888999999999999999999998 3545655 556788999999999999999999999999999999
Q ss_pred ccCCCCCCeEEEE
Q 009048 349 AGRDQLPSKSLLY 361 (545)
Q Consensus 349 agR~g~~~~~i~~ 361 (545)
.-|.|+...++++
T Consensus 840 IYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 840 IYRMGQKKDVFIH 852 (901)
T ss_pred HHHhcccCceEEE
Confidence 9999998877665
No 159
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.01 E-value=1.9e-08 Score=110.97 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=100.5
Q ss_pred CccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC--CcEEEeccccccccccCCCcEEEEeCC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNI 335 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~--~~VLVaT~a~~~GiD~p~v~~VI~~~~ 335 (545)
+.++|||..-.+..+-|..+|.-+|+....+.|..+-++|+..+++|..+. ...|++|-.-|.|||+-..+.||.||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 567999999999999999999999999999999999999999999999654 457889999999999999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhc
Q 009048 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (545)
Q Consensus 336 p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~ 377 (545)
-+++..-.|.--|+.|-|+--.+.+|---++...-+.|+++.
T Consensus 1356 DwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1356 DWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred CCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 999999999999999999876666654444433334444443
No 160
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.00 E-value=2.2e-09 Score=108.25 Aligned_cols=161 Identities=19% Similarity=0.120 Sum_probs=96.5
Q ss_pred HHHHHHHHHH-------------cCCCEEEEcCCCchHHHHHHHHHh---cC--C---CeEEEEcChHHHHHHHHHHHHH
Q 009048 42 KQLDAIQAVL-------------SGRDCFCLMPTGGGKSMCYQIPAL---AK--P---GIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 42 ~Q~~~i~~il-------------~g~d~lv~apTGsGKTl~~~lp~l---~~--~---~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
+|.+++..++ ..+.+++.-.+|.|||+..+..+. .. . ..+|||+|. +++.+|...+.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 5777777653 235678888999999987654432 11 1 259999999 888899999998
Q ss_pred cC----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECccccc---ChhhHHHHHhhhccCCccEEEEecccccccc
Q 009048 101 KG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (545)
Q Consensus 101 ~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~---t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (545)
.. .......+.. ..............++++|.+.+. .+.....+.. ..+++|||||+|.+...
T Consensus 80 ~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDS------ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HSGT-TS-EEEESSSC------HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTT
T ss_pred cccccccccccccccc------ccccccccccccceeeecccccccccccccccccccc----ccceeEEEecccccccc
Confidence 64 3334333333 111122233445789999999777 2222333333 23899999999999654
Q ss_pred CCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCC
Q 009048 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP 220 (545)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~ 220 (545)
+ .........+....+++||||+......++...+.+-.+
T Consensus 150 ~-------s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~ 189 (299)
T PF00176_consen 150 D-------SKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNP 189 (299)
T ss_dssp T-------SHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCT
T ss_pred c-------ccccccccccccceEEeeccccccccccccccchheeec
Confidence 4 223333333556778999999988877777776655433
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.95 E-value=5.1e-08 Score=113.06 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=94.2
Q ss_pred cEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC--CCcEEEeccccccccccCCCcEEEEeCCCC
Q 009048 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337 (545)
Q Consensus 260 ~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g--~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~ 337 (545)
+++||.......+-+...|...++....++|.++.+.|...++.|.++ ..-++++|.+.|.|+|+-..++||++|+.+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 799999999999999999999998899999999999999999999985 455677788999999999999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCeEEEEe
Q 009048 338 SMEAFYQESGRAGRDQLPSKSLLYY 362 (545)
Q Consensus 338 s~~~y~Qr~GRagR~g~~~~~i~~~ 362 (545)
++....|...|+.|.|+...+.++-
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r 817 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYR 817 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEE
Confidence 9999999999999999887766553
No 162
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.91 E-value=3.6e-10 Score=98.72 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=73.4
Q ss_pred cCCCEEEEcCCCchHHHHHHH----HHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcC
Q 009048 52 SGRDCFCLMPTGGGKSMCYQI----PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l----p~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (545)
+|+-.++-+.+|+|||--.+- -++.+..++||+.||+.++.+..+.|+...+.. -....... ..+
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~--~t~~~~~~---------~~g 71 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRF--HTNARMRT---------HFG 71 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEE--ESTTSS-------------S
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCccc--Cceeeecc---------ccC
Confidence 355568899999999964332 345689999999999999999999998654332 22111110 001
Q ss_pred CCCccEEEECcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChh
Q 009048 128 KPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (545)
Q Consensus 128 ~~~~~il~~tpe~~~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~ 206 (545)
. ++..+.+.+ +...+.+-....++++||+||||....+.-.+|..+.. +.......+|++|||++..
T Consensus 72 ~--------~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~----~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 72 S--------SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRE----LAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp S--------SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHH----HHHTTS-EEEEEESS-TT-
T ss_pred C--------CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHH----hhhccCeeEEEEeCCCCCC
Confidence 1 111333333 33344445556779999999999866543223322221 1223457899999999875
Q ss_pred h
Q 009048 207 V 207 (545)
Q Consensus 207 ~ 207 (545)
.
T Consensus 140 ~ 140 (148)
T PF07652_consen 140 E 140 (148)
T ss_dssp -
T ss_pred C
Confidence 4
No 163
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.75 E-value=4.4e-07 Score=98.84 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=89.4
Q ss_pred CccEEEEecchhhHHHHHHHHHh----------------------CCCcEEEecCCCCHHHHHHHHHHHHcCC----CcE
Q 009048 258 DTCAIVYCLERTTCDELSAYLSA----------------------GGISCAAYHAGLNDKARSSVLDDWISSR----KQV 311 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~----------------------~g~~~~~~h~~l~~~~R~~~~~~f~~g~----~~V 311 (545)
+.+.|||-.+....+-+..+|.. .|...+.+.|..+...|..+.+.|.+-. .-.
T Consensus 1142 GDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~ 1221 (1567)
T KOG1015|consen 1142 GDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLF 1221 (1567)
T ss_pred cceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEE
Confidence 56799999999988888888763 2345677889999999999999998532 237
Q ss_pred EEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEE
Q 009048 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (545)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~ 361 (545)
||+|-|.+.|||+-....||+||..+++.--.|-+=|+-|.|+..-|++|
T Consensus 1222 LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1222 LISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred EEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99999999999999999999999999999999999999999987777766
No 164
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.74 E-value=1.4e-05 Score=83.50 Aligned_cols=219 Identities=15% Similarity=0.200 Sum_probs=146.7
Q ss_pred cCCccEEEEeccccccc--cCCCCHHHH------------HHHHHHHHhCC------CcCEEEEEcCCChhhHHHHHHHh
Q 009048 156 RGLLNLVAIDEAHCISS--WGHDFRPSY------------RKLSSLRNYLP------DVPILALTATAAPKVQKDVMESL 215 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~--~g~~fr~~~------------~~l~~l~~~~~------~~~~l~lTAT~~~~~~~~i~~~l 215 (545)
+..+.++|||.||.+.- |.| ....+ ..+++++..+- -.|.|++|+..+|+...-+....
T Consensus 159 LSSIEv~iiD~ad~l~MQNW~H-v~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~ 237 (442)
T PF06862_consen 159 LSSIEVLIIDQADVLLMQNWEH-VLHVFEHLNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHC 237 (442)
T ss_pred hheeeeEeechhhHHHHhhHHH-HHHHHHHhccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhC
Confidence 34488999999998753 332 00000 11222332221 25789999999998765444321
Q ss_pred -cCCCCeEEecc-----------CCCCcceeeeeccc---chhhHHHH----HHHHHH-hCCCccEEEEecchhhHHHHH
Q 009048 216 -CLQNPLVLKSS-----------FNRPNLFYEVRYKD---LLDDAYAD----LCSVLK-ANGDTCAIVYCLERTTCDELS 275 (545)
Q Consensus 216 -~~~~~~~~~~~-----------~~r~ni~~~v~~~~---~~~~~~~~----l~~~l~-~~~~~~~IIf~~t~~~~~~l~ 275 (545)
+...-+.+... ...++++..+.... ..+..++. +..-+. ....+.+|||++|--+--.+-
T Consensus 238 ~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlR 317 (442)
T PF06862_consen 238 QNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLR 317 (442)
T ss_pred cCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHH
Confidence 11111112111 11222333322211 12233333 222233 444567999999999999999
Q ss_pred HHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc--cccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCC
Q 009048 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (545)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a--~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g 353 (545)
+.|++.++....+|-..++.+-...-..|..|+.+||+-|.= |=+=..+.+|+.||.|++|..+.-|-..++-.+...
T Consensus 318 N~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~ 397 (442)
T PF06862_consen 318 NYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESS 397 (442)
T ss_pred HHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999974 455667889999999999999988877775555443
Q ss_pred C------CCeEEEEeccccHHHHHHHHH
Q 009048 354 L------PSKSLLYYGMDDRRRMEFILS 375 (545)
Q Consensus 354 ~------~~~~i~~~~~~d~~~~~~i~~ 375 (545)
. ...|.++|+.-|.-+++.|.-
T Consensus 398 ~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 398 GGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred cccccccCceEEEEecHhHHHHHHHHhC
Confidence 3 578999999999888887764
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.67 E-value=5.4e-06 Score=95.75 Aligned_cols=282 Identities=19% Similarity=0.191 Sum_probs=151.6
Q ss_pred CCEEEEcCCCchHHHHHHHHH-----hcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCC
Q 009048 54 RDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~-----l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (545)
+..+|+=-||||||+.....| ....+.++||+-.+.|-.|..+.+.+++..........+...... .+..+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~---~l~~~- 349 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKE---LLEDG- 349 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHH---HHhcC-
Confidence 458999999999998654333 235688999999999999999999987644332222222232222 23322
Q ss_pred CCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhH
Q 009048 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (545)
Q Consensus 129 ~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~ 208 (545)
.-.|+++|-..+.....-... .. ..+.=-+||+||||+ ++.| ..-..+...+++...++||+||....-
T Consensus 350 -~~~ii~TTIQKf~~~~~~~~~-~~-~~~~~ivvI~DEaHR-SQ~G-------~~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 350 -KGKIIVTTIQKFNKAVKEDEL-EL-LKRKNVVVIIDEAHR-SQYG-------ELAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred -CCcEEEEEecccchhhhcccc-cc-cCCCcEEEEEechhh-cccc-------HHHHHHHHHhccceEEEeeCCcccccc
Confidence 346777776655432211100 01 112234688999998 5556 223345777889999999999864322
Q ss_pred HHHHHHhcCCCCeEE--eccCCCC---cceeeee-cccch-------------------h--------------------
Q 009048 209 KDVMESLCLQNPLVL--KSSFNRP---NLFYEVR-YKDLL-------------------D-------------------- 243 (545)
Q Consensus 209 ~~i~~~l~~~~~~~~--~~~~~r~---ni~~~v~-~~~~~-------------------~-------------------- 243 (545)
..-.....-..-..+ ....... .+.|... ..+.. .
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 210000100000000 0000000 1111111 00000 0
Q ss_pred ----hHHHHHHHHHH--hCCCccEEEEecchhhHHHHHHHHHhCCC---------c--------------EEEecCCCCH
Q 009048 244 ----DAYADLCSVLK--ANGDTCAIVYCLERTTCDELSAYLSAGGI---------S--------------CAAYHAGLND 294 (545)
Q Consensus 244 ----~~~~~l~~~l~--~~~~~~~IIf~~t~~~~~~l~~~L~~~g~---------~--------------~~~~h~~l~~ 294 (545)
.....+.+... ...+.++.+.|.++..+..+++....... . ....|.....
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 578 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLKD 578 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHHH
Confidence 00011111111 22345677778887755555544332100 0 0001222222
Q ss_pred HHHHHHHHHH--HcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCC
Q 009048 295 KARSSVLDDW--ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (545)
Q Consensus 295 ~~R~~~~~~f--~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 352 (545)
. +.....+| .....++||-++.+-.|.|-|-.. .+-.|-|----..+|.+-|+.|.
T Consensus 579 ~-~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 579 E-KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred H-HhhhhhhhcCcCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccC
Confidence 2 22333333 356789999999999999999554 45577777788899999999995
No 166
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.66 E-value=2.4e-07 Score=90.85 Aligned_cols=134 Identities=21% Similarity=0.214 Sum_probs=95.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHH----
Q 009048 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK---- 99 (545)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~---- 99 (545)
..+..+.+|+. |++.|.-++-.+..|+ |+.+.||-|||++..+|+.. .+..+=||+....|+..-.+.+.
T Consensus 67 rea~~r~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 67 REAARRTLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp HHHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHH
Confidence 34556677876 8899999988887777 99999999999998888763 56778889999999987666654
Q ss_pred HcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh---hhccCCccEEEEecccccc
Q 009048 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS 171 (545)
Q Consensus 100 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~---~~~~~~l~~iViDEaH~i~ 171 (545)
.+|+.+...........+...+. .+|+|+|...+.-.-+...+.. ......+.++||||||.+.
T Consensus 144 ~LGlsv~~~~~~~~~~~r~~~Y~--------~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 144 FLGLSVGIITSDMSSEERREAYA--------ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HTT--EEEEETTTEHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhhccccCccccCHHHHHHHHh--------CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 47999999998888777666553 6799999886654433333321 1113568999999999875
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.53 E-value=7.1e-07 Score=89.55 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=59.4
Q ss_pred hcCCCCCCHHHHHHH----HHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCC-----eEEEEcChHHHHHHHHHHHH
Q 009048 33 HFGHAQFRDKQLDAI----QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLK 99 (545)
Q Consensus 33 ~fg~~~~r~~Q~~~i----~~il~g~d~lv~apTGsGKTl~~~lp~l~----~~~-----~~lVi~P~~aL~~qq~~~l~ 99 (545)
.|+|. +||.|.+.+ ..+.+|.++++.||||+|||++|++|++. ... +++|.++|.+++.+.+..++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 37887 599999954 45557889999999999999999999973 232 79999999999988888888
Q ss_pred HcCCceeEe
Q 009048 100 EKGIAGEFL 108 (545)
Q Consensus 100 ~~gi~~~~~ 108 (545)
+...+..+.
T Consensus 83 ~~~~~~~~~ 91 (289)
T smart00489 83 KLMQKVEYE 91 (289)
T ss_pred hccccccee
Confidence 764333333
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.53 E-value=7.1e-07 Score=89.55 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=59.4
Q ss_pred hcCCCCCCHHHHHHH----HHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCC-----eEEEEcChHHHHHHHHHHHH
Q 009048 33 HFGHAQFRDKQLDAI----QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLK 99 (545)
Q Consensus 33 ~fg~~~~r~~Q~~~i----~~il~g~d~lv~apTGsGKTl~~~lp~l~----~~~-----~~lVi~P~~aL~~qq~~~l~ 99 (545)
.|+|. +||.|.+.+ ..+.+|.++++.||||+|||++|++|++. ... +++|.++|.+++.+.+..++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 37887 599999954 45557889999999999999999999973 232 79999999999988888888
Q ss_pred HcCCceeEe
Q 009048 100 EKGIAGEFL 108 (545)
Q Consensus 100 ~~gi~~~~~ 108 (545)
+...+..+.
T Consensus 83 ~~~~~~~~~ 91 (289)
T smart00488 83 KLMQKVEYE 91 (289)
T ss_pred hccccccee
Confidence 764333333
No 169
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=1.5e-05 Score=82.55 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=94.2
Q ss_pred cEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc--cccccccCCCcEEEEeCCCC
Q 009048 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGIDRKDVRLVCHFNIPK 337 (545)
Q Consensus 260 ~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a--~~~GiD~p~v~~VI~~~~p~ 337 (545)
-++||.++.-.--++-.++++.++....+|--.+...-...-+-|..|...||+-|.- |-+-.++.+|+.||.|.+|.
T Consensus 554 ~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~ 633 (698)
T KOG2340|consen 554 GILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPN 633 (698)
T ss_pred ceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCC
Confidence 4799999999999999999999888887777766666667778899999999999974 46778999999999999999
Q ss_pred CHHHH---HHHHhhccCCC----CCCeEEEEeccccHHHHHHHHH
Q 009048 338 SMEAF---YQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILS 375 (545)
Q Consensus 338 s~~~y---~Qr~GRagR~g----~~~~~i~~~~~~d~~~~~~i~~ 375 (545)
.+.-| +.++||+.-.| ....|.++|+.-|...++.+.-
T Consensus 634 ~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 634 NPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred CcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 88665 55666665433 3357999999999888876653
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.30 E-value=3.7e-06 Score=91.53 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=87.2
Q ss_pred CccEEEEecchhhHHHHHHHHHhC-------CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEE
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~V 330 (545)
.+.++||.+--...-.|..+|... .+.....|+.+...+..++.+....|..++|+.|+.+...+.+.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 456888888888777777777653 3467889999988888888888889999999999999999999999998
Q ss_pred EEeCCCC------------------CHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 331 CHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 331 I~~~~p~------------------s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
|..+... |.....|+.||+||.. +|.|..+.+..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR-~G~~f~lcs~a 774 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR-PGFCFHLCSRA 774 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCceec-ccccccccHHH
Confidence 8665432 6778899999999975 88888887643
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.25 E-value=1.9e-05 Score=89.18 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=42.3
Q ss_pred CCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCC
Q 009048 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (545)
Q Consensus 308 ~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 352 (545)
..+.|++-+|+..|.|-|+|-.++-+.-..|...-.|.+||..|-
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 578999999999999999999999999999999999999999994
No 172
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.22 E-value=3.5e-06 Score=77.54 Aligned_cols=113 Identities=16% Similarity=0.234 Sum_probs=76.8
Q ss_pred HHHHHhCCCccEEEEecchhhHHHHHHHHHhCCC--cEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc--ccccccccC
Q 009048 250 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRK 325 (545)
Q Consensus 250 ~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~--a~~~GiD~p 325 (545)
.++++..+ +.++||++|.+..+.+.+.+...+. ....+.- +...+..+++.|++++-.||+|+. .+.+|||+|
T Consensus 2 ~~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 2 LELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred hHHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 34445444 6799999999999999999987532 1122222 355778899999999999999999 999999999
Q ss_pred C--CcEEEEeCCCC----C--------------------------HHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 326 D--VRLVCHFNIPK----S--------------------------MEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 326 ~--v~~VI~~~~p~----s--------------------------~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
+ ++.||..++|. + +....|.+||+-|....--++++.+..
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 6 78999999884 1 122368899999988655556666543
No 173
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.19 E-value=1.5e-07 Score=103.79 Aligned_cols=220 Identities=18% Similarity=0.203 Sum_probs=120.7
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEEcChHHHHHHHHHHHHH----cCCceeE
Q 009048 38 QFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKE----KGIAGEF 107 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~-g~d~lv~apTGsGKTl~~~lp~l~-----~~~~~lVi~P~~aL~~qq~~~l~~----~gi~~~~ 107 (545)
.+.|.|...+..+.. ..++++.+|||+|||++|.+.... ...++++|.|..+|+..-++.+.. -|++..-
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 355667666655442 357889999999999999877653 257899999999999876666654 3566666
Q ss_pred ecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccccc-CCCCHHHHHHHHH
Q 009048 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW-GHDFRPSYRKLSS 186 (545)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~-g~~fr~~~~~l~~ 186 (545)
+.+........ -.+..++++|||....-. +.+....-...++++|+||.||+.+- |+-+ .+..
T Consensus 1007 ~tgd~~pd~~~---------v~~~~~~ittpek~dgi~--Rsw~~r~~v~~v~~iv~de~hllg~~rgPVl-----e~iv 1070 (1230)
T KOG0952|consen 1007 LTGDVTPDVKA---------VREADIVITTPEKWDGIS--RSWQTRKYVQSVSLIVLDEIHLLGEDRGPVL-----EVIV 1070 (1230)
T ss_pred ccCccCCChhh---------eecCceEEcccccccCcc--ccccchhhhccccceeecccccccCCCcceE-----EEEe
Confidence 65554443211 113678899998664321 11222222344788999999998763 3211 1111
Q ss_pred HHHhC------CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC----------CCcceeeeecccchhhHHHHHH
Q 009048 187 LRNYL------PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN----------RPNLFYEVRYKDLLDDAYADLC 250 (545)
Q Consensus 187 l~~~~------~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~----------r~ni~~~v~~~~~~~~~~~~l~ 250 (545)
.+..+ +.++.+.+|--+. ...|+..+|+.++..-++.+.. -|..+|..+........++.+
T Consensus 1071 sr~n~~s~~t~~~vr~~glsta~~--na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qai- 1147 (1230)
T KOG0952|consen 1071 SRMNYISSQTEEPVRYLGLSTALA--NANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAI- 1147 (1230)
T ss_pred eccccCccccCcchhhhhHhhhhh--ccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHH-
Confidence 11111 1233333332221 1256677787765421111111 111223222222222222222
Q ss_pred HHHHhCCCccEEEEecchhhHHHHHHHH
Q 009048 251 SVLKANGDTCAIVYCLERTTCDELSAYL 278 (545)
Q Consensus 251 ~~l~~~~~~~~IIf~~t~~~~~~l~~~L 278 (545)
....+..++|||+.++++...-+..|
T Consensus 1148 --k~~sp~~p~lifv~srrqtrlta~~l 1173 (1230)
T KOG0952|consen 1148 --KTHSPIKPVLIFVSSRRQTRLTALDL 1173 (1230)
T ss_pred --hcCCCCCceEEEeecccccccchHhH
Confidence 23456788999999887654444333
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.05 E-value=0.00019 Score=81.12 Aligned_cols=79 Identities=15% Similarity=0.039 Sum_probs=52.2
Q ss_pred ccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH-HHHHhCCCcCEEEEEcCCChh---
Q 009048 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS-SLRNYLPDVPILALTATAAPK--- 206 (545)
Q Consensus 131 ~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~-~l~~~~~~~~~l~lTAT~~~~--- 206 (545)
-.++++||.++...- +........+..|||||||++..-. .|..+. ..+...+..-+.||||.+...
T Consensus 8 ggi~~~T~rIl~~Dl----L~~ri~~~~itgiiv~~Ahr~~~~~-----~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g 78 (814)
T TIGR00596 8 GGIFSITSRILVVDL----LTGIIPPELITGILVLRADRIIESS-----QEAFILRLYRQKNKTGFIKAFSDNPEAFTMG 78 (814)
T ss_pred CCEEEEechhhHhHH----hcCCCCHHHccEEEEeecccccccc-----cHHHHHHHHHHhCCCcceEEecCCCcccccc
Confidence 457888888775543 4444555668999999999986521 123333 345555566789999998763
Q ss_pred --hHHHHHHHhcCC
Q 009048 207 --VQKDVMESLCLQ 218 (545)
Q Consensus 207 --~~~~i~~~l~~~ 218 (545)
-...+++.|++.
T Consensus 79 ~~~l~~vmk~L~i~ 92 (814)
T TIGR00596 79 FSPLETKMRNLFLR 92 (814)
T ss_pred hHHHHHHHHHhCcC
Confidence 355666666664
No 175
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.98 E-value=0.00011 Score=72.61 Aligned_cols=163 Identities=17% Similarity=0.115 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHc----------CCCEEEEcCCCchHHHHH---HHHHhcCC-CeEEEEcChHHHHHHHHHHHHHcCC
Q 009048 38 QFRDKQLDAIQAVLS----------GRDCFCLMPTGGGKSMCY---QIPALAKP-GIVLVVSPLIALMENQVIGLKEKGI 103 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~----------g~d~lv~apTGsGKTl~~---~lp~l~~~-~~~lVi~P~~aL~~qq~~~l~~~gi 103 (545)
.+...|.+++-...+ ..-+++--.||.||--.. ++-...++ .+.|+|+.+..|..|-.+.|+..|.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 378899998755431 123455559999998432 22333454 4699999999999999999998775
Q ss_pred ceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccCh--------hhHHHHHhhhccCCccEEEEeccccccccCC
Q 009048 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP--------GFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (545)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~--------~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~ 175 (545)
....+......+.. ......--++++|.-.+... .++..+........=.+||+||||.......
T Consensus 117 ~~i~v~~l~~~~~~-------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 117 DNIPVHPLNKFKYG-------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CcccceechhhccC-------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 54333322211100 00112345777777755433 1333333332222235899999999876321
Q ss_pred C---CHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 176 D---FRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 176 ~---fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
. -...=.....+.+.+|+.+++.+|||...+.
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep 224 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLPNARVVYASATGASEP 224 (303)
T ss_pred cCccccHHHHHHHHHHHhCCCCcEEEecccccCCC
Confidence 0 0111134556788899999999999976554
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.78 E-value=9.9e-05 Score=69.76 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHH--HHHh-cCCCeEEEEcChHHHHHH
Q 009048 38 QFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQ--IPAL-AKPGIVLVVSPLIALMEN 93 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~--d~lv~apTGsGKTl~~~--lp~l-~~~~~~lVi~P~~aL~~q 93 (545)
+|++.|.+++..++.+. -+++.+|.|+|||.+.. ..++ ..+..+++++||...+.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~ 61 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKE 61 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHH
Confidence 47899999999997554 36778999999996532 2222 346789999999887765
No 177
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.69 E-value=0.00037 Score=74.27 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=64.4
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH-----HHHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeE
Q 009048 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY-----QIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (545)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~-----~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~ 107 (545)
.+|+.++...|..|+.+++...-.|+++|+|+|||.+. .+.- ...+.+||+.|+.--+.|..+.+.+.|+++.-
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~-~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvR 483 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLAR-QHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVR 483 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHH-hcCCceEEEcccchhHHHHHHHHHhcCceEee
Confidence 46888999999999999999999999999999999643 2222 25788999999999999989999998888776
Q ss_pred ecc
Q 009048 108 LSS 110 (545)
Q Consensus 108 ~~~ 110 (545)
+.+
T Consensus 484 l~a 486 (935)
T KOG1802|consen 484 LCA 486 (935)
T ss_pred eeh
Confidence 544
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.62 E-value=0.00013 Score=70.34 Aligned_cols=63 Identities=33% Similarity=0.432 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCCchHHH--HHHHHHh---------cCCCeEEEEcChHHHHHHHHHHHHH
Q 009048 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSM--CYQIPAL---------AKPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d-~lv~apTGsGKTl--~~~lp~l---------~~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
++.+.|.+|+..++.... ++|.||+|+|||. +.++..+ ..++.+||++|+.+-+.+.++.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999888 9999999999993 3334333 4567899999999999999998877
No 179
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.59 E-value=0.018 Score=62.69 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=92.6
Q ss_pred CccEEEEecchhhHHHHHHHHHhCCCc------------------EEEecCCCCHHHHHHHHHHHHcC---CCcEEEecc
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAGGIS------------------CAAYHAGLNDKARSSVLDDWISS---RKQVVVATV 316 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~g~~------------------~~~~h~~l~~~~R~~~~~~f~~g---~~~VLVaT~ 316 (545)
+.++|||..+....+.+.+.|.++.++ ...+.|..+..+|...+++|.+. ..-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 346788888888888888888764332 23567888899999999999853 246889999
Q ss_pred ccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHH
Q 009048 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (545)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i 373 (545)
+...||++-....+|.|+..+.+.--.|.+-|.-|-|+..-|++|----|...-+.|
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkI 855 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKI 855 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHH
Confidence 999999998888888899999999999999999999999999988665554443333
No 180
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.58 E-value=0.0013 Score=72.32 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=56.6
Q ss_pred CCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCC--CCCC-----------eEEEEeccccHHHHHHH
Q 009048 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD--QLPS-----------KSLLYYGMDDRRRMEFI 373 (545)
Q Consensus 307 g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~--g~~~-----------~~i~~~~~~d~~~~~~i 373 (545)
...+.|++-.|+-+|.|-|+|=.++-+....|..+=.|++||.-|- .+.| .-.++++.++...++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999994 2222 23355666777777666
Q ss_pred HHhc
Q 009048 374 LSKN 377 (545)
Q Consensus 374 ~~~~ 377 (545)
..+.
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 6554
No 181
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.58 E-value=0.00043 Score=73.47 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEcCCCchHHHHHH---HHHhcCCCeEEEEcChHHHHHHHHHHHH
Q 009048 37 AQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLK 99 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~d-~lv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~aL~~qq~~~l~ 99 (545)
..+.+-|+.|+......++ .++.+|+|+|||.... .-++.++.++||..||..-+...+++|.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 4578899999999998865 5789999999996533 2345678999999999999999999755
No 182
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.47 E-value=0.0011 Score=73.78 Aligned_cols=127 Identities=26% Similarity=0.234 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCCchHHH--HHHHHHh-cCCCeEEEEcChHHHHHHHHHHHHHcCCceeEeccccc
Q 009048 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSM--CYQIPAL-AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d-~lv~apTGsGKTl--~~~lp~l-~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~ 113 (545)
.+...|++|+..++..+| .++.+-+|+|||. |.++-+| ..+..+|+.+-|.+-+....-.|+..++...-+.+...
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~k 748 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEK 748 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccc
Confidence 478899999999888775 5889999999994 4455555 45778999999999999999999999988776665543
Q ss_pred HHHHHH-----------HHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009048 114 MQVKTK-----------IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (545)
Q Consensus 114 ~~~~~~-----------~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (545)
.....+ .++++...-....|+-+|---+..|-| ..+.+++.|||||-.++.
T Consensus 749 ih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf--------~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 749 IHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF--------VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh--------hccccCEEEEcccccccc
Confidence 322111 112222222234455554444443433 233489999999998875
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.42 E-value=0.00034 Score=66.08 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---C--CCeEEEEcChHHH
Q 009048 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIAL 90 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~--~~~~lVi~P~~aL 90 (545)
...+..|..+++++++.+-+++.+|.|+|||+..+..++. . -.+++++-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 3467899999999998788899999999999887766653 2 3467888888764
No 184
>PF13245 AAA_19: Part of AAA domain
Probab=97.39 E-value=0.00046 Score=54.43 Aligned_cols=53 Identities=30% Similarity=0.368 Sum_probs=36.3
Q ss_pred HHHHHHcCCC-EEEEcCCCchHHHHHH--HHHh-cC----CCeEEEEcChHHHHHHHHHHH
Q 009048 46 AIQAVLSGRD-CFCLMPTGGGKSMCYQ--IPAL-AK----PGIVLVVSPLIALMENQVIGL 98 (545)
Q Consensus 46 ~i~~il~g~d-~lv~apTGsGKTl~~~--lp~l-~~----~~~~lVi~P~~aL~~qq~~~l 98 (545)
+|...+.+.. ++|.+|+|+|||.... +..+ .. +..++|++|++..+.+..+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4553334444 5569999999994332 1222 22 678999999999998877777
No 185
>PRK10536 hypothetical protein; Provisional
Probab=97.37 E-value=0.002 Score=62.63 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=41.2
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCC--CeEEEEcChHHH
Q 009048 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKP--GIVLVVSPLIAL 90 (545)
Q Consensus 34 fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l---~~~--~~~lVi~P~~aL 90 (545)
.++...+..|...+.++.++.-+++.+|+|+|||+.....++ ..+ .++++.-|....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 345556779999999998888889999999999976654433 222 345666677654
No 186
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.35 E-value=0.0019 Score=57.55 Aligned_cols=93 Identities=20% Similarity=0.304 Sum_probs=61.6
Q ss_pred HHHHHHHHHhCCC------cEEEecCCCCHHHHHHHHHHHHcCC-CcEEEeccccccccccCC--CcEEEEeCCCCC---
Q 009048 271 CDELSAYLSAGGI------SCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD--VRLVCHFNIPKS--- 338 (545)
Q Consensus 271 ~~~l~~~L~~~g~------~~~~~h~~l~~~~R~~~~~~f~~g~-~~VLVaT~a~~~GiD~p~--v~~VI~~~~p~s--- 338 (545)
.+.++..+...+. .-..+.-+.+..+...+++.|.+.. ..||++|..+.+|||+|+ .+.||..++|..
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 3445555544433 1234444455556788899998654 379999988999999997 578998887741
Q ss_pred ----------------------------HHHHHHHHhhccCCCCCCeEEEEec
Q 009048 339 ----------------------------MEAFYQESGRAGRDQLPSKSLLYYG 363 (545)
Q Consensus 339 ----------------------------~~~y~Qr~GRagR~g~~~~~i~~~~ 363 (545)
.....|.+||+-|....--++++++
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1233677888888775444555554
No 187
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.28 E-value=0.0017 Score=57.91 Aligned_cols=94 Identities=23% Similarity=0.333 Sum_probs=61.2
Q ss_pred HHHHHHHHHhCCC---cEEEecCCCCHHHHHHHHHHHHcCCC---cEEEeccc--cccccccCC--CcEEEEeCCCC---
Q 009048 271 CDELSAYLSAGGI---SCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVA--FGMGIDRKD--VRLVCHFNIPK--- 337 (545)
Q Consensus 271 ~~~l~~~L~~~g~---~~~~~h~~l~~~~R~~~~~~f~~g~~---~VLVaT~a--~~~GiD~p~--v~~VI~~~~p~--- 337 (545)
.+.+++.+.+.+. ....+.-+....+...+++.|++..- .||+++.- +++|||+|+ .+.||..++|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4556666655443 12233323333345678888886543 68988887 999999997 58899988874
Q ss_pred -C---------------------------HHHHHHHHhhccCCCCCCeEEEEecc
Q 009048 338 -S---------------------------MEAFYQESGRAGRDQLPSKSLLYYGM 364 (545)
Q Consensus 338 -s---------------------------~~~y~Qr~GRagR~g~~~~~i~~~~~ 364 (545)
+ +....|.+||+-|....--++++.+.
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 1 12337888999998765445555553
No 188
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.28 E-value=0.003 Score=71.40 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=46.4
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHhcC-C--CeEEEEcChHHHHH
Q 009048 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-P--GIVLVVSPLIALME 92 (545)
Q Consensus 30 l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~--~lp~l~~-~--~~~lVi~P~~aL~~ 92 (545)
+...+|+ .+++.|++|+..+..++-+++.+++|+|||.+. ++-++.. + ..++++.||-.-+.
T Consensus 316 ~~~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 316 VEKKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred HHHhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHH
Confidence 3444565 499999999999998888999999999999643 2333433 3 46777889977664
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.25 E-value=0.0011 Score=68.66 Aligned_cols=46 Identities=17% Similarity=0.078 Sum_probs=33.8
Q ss_pred CEEEEcCCCchHHHHHH-HHH-h---cCCCeEEEEcChHHHHHHHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ-IPA-L---AKPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~-l---~~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
-++|.+.+|||||++.+ +.. + ..+..++++++..+|+......+..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 36899999999997654 222 2 3467899999999998766666654
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.06 E-value=0.007 Score=66.62 Aligned_cols=71 Identities=18% Similarity=0.102 Sum_probs=48.7
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHhcC------CCeEEEEcChHHHHHHHHHHHH
Q 009048 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK------PGIVLVVSPLIALMENQVIGLK 99 (545)
Q Consensus 29 ~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~--~lp~l~~------~~~~lVi~P~~aL~~qq~~~l~ 99 (545)
.+.+.|+...-.++|+.|+..++.++-+++.+++|+|||.+. ++..+.. ...+++..||---+....+.+.
T Consensus 136 ~l~~~~~~~~~~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~ 214 (586)
T TIGR01447 136 ILENLFPLLNEQNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLR 214 (586)
T ss_pred HHHHhhccccccHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHH
Confidence 344444433234799999999999999999999999999643 3333321 1468889999876655444443
No 191
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.05 E-value=0.0018 Score=56.41 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=12.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (545)
++-+++.||+|+|||.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999754
No 192
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.05 E-value=0.0063 Score=67.18 Aligned_cols=77 Identities=21% Similarity=0.113 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhcCCCC-CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHhcC-----CCeEEEEcChHHHHHHH
Q 009048 23 KEALVKLLRWHFGHAQ-FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-----PGIVLVVSPLIALMENQ 94 (545)
Q Consensus 23 ~~~l~~~l~~~fg~~~-~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~--~lp~l~~-----~~~~lVi~P~~aL~~qq 94 (545)
...+...|.+.|+... ..++|+.|+...+.++-+++.+++|+|||.+. ++..+.. ...+++..||---+...
T Consensus 136 ~~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL 215 (615)
T PRK10875 136 EALLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARL 215 (615)
T ss_pred hHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHH
Confidence 3567777888787642 35899999999999999999999999999653 3333321 23677889998777665
Q ss_pred HHHHH
Q 009048 95 VIGLK 99 (545)
Q Consensus 95 ~~~l~ 99 (545)
.+.+.
T Consensus 216 ~e~~~ 220 (615)
T PRK10875 216 TESLG 220 (615)
T ss_pred HHHHH
Confidence 55543
No 193
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.011 Score=61.59 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=72.2
Q ss_pred CCEEEEcCCCchHHHHHH-HHHh-c-----CCCeEEEEc--ChHHHHHHHHHHHHH-cCCceeEecccccHHHHHHHHHh
Q 009048 54 RDCFCLMPTGGGKSMCYQ-IPAL-A-----KPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYED 123 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp~l-~-----~~~~~lVi~--P~~aL~~qq~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~ 123 (545)
+.+++++|||+|||.+.. +.+. . .+..+.+++ +.+.-+.+|...+.. +|++...... .
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~---~--------- 242 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES---F--------- 242 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc---H---------
Confidence 457899999999996543 3322 1 234455544 556666666666555 5655432211 0
Q ss_pred hhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-C-cCEEEEEc
Q 009048 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-D-VPILALTA 201 (545)
Q Consensus 124 ~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~-~~~l~lTA 201 (545)
..+...+.. ....++|+||++.+... + ...+.++..+..... . -.++.|+|
T Consensus 243 --------------------~~l~~~L~~---~~~~DlVLIDTaGr~~~---~-~~~l~el~~~l~~~~~~~e~~LVlsa 295 (388)
T PRK12723 243 --------------------KDLKEEITQ---SKDFDLVLVDTIGKSPK---D-FMKLAEMKELLNACGRDAEFHLAVSS 295 (388)
T ss_pred --------------------HHHHHHHHH---hCCCCEEEEcCCCCCcc---C-HHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 011111221 23478999999997642 1 112345555555432 3 46799999
Q ss_pred CCChhhHHHHHHHhc
Q 009048 202 TAAPKVQKDVMESLC 216 (545)
Q Consensus 202 T~~~~~~~~i~~~l~ 216 (545)
|.......+++..+.
T Consensus 296 t~~~~~~~~~~~~~~ 310 (388)
T PRK12723 296 TTKTSDVKEIFHQFS 310 (388)
T ss_pred CCCHHHHHHHHHHhc
Confidence 999888887777664
No 194
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.97 E-value=0.0024 Score=64.16 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=48.1
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcChHHHH
Q 009048 31 RWHFGHAQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALM 91 (545)
Q Consensus 31 ~~~fg~~~~r~~Q~~~i~~il~g~--d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~aL~ 91 (545)
++.||+....-.|.-|++.++... =|.+.++.|+|||+.++.+++.+ -.++||.=|+..+-
T Consensus 221 ~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 221 QEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 478999977889999999998664 36678899999998887777642 45677777887764
No 195
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.83 E-value=0.018 Score=55.00 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=54.2
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHc---CCCEEEEcCCCchHHHHHHHHHh----cCC-CeEEEEcCh
Q 009048 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS---GRDCFCLMPTGGGKSMCYQIPAL----AKP-GIVLVVSPL 87 (545)
Q Consensus 16 ~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~---g~d~lv~apTGsGKTl~~~lp~l----~~~-~~~lVi~P~ 87 (545)
.|.|..-++.+.-.+.. ++ .+|+.|.++...+.+ |++.+.++-+|.|||.+ ++|++ ..+ ..+.+++|
T Consensus 4 ~w~p~~~P~wLl~E~e~--~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVp- 78 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES--NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVP- 78 (229)
T ss_pred CCCchhChHHHHHHHHc--Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcC-
Confidence 45555554555433332 33 489999999999885 57899999999999976 44544 233 45556666
Q ss_pred HHHHHHHHHHHHH
Q 009048 88 IALMENQVIGLKE 100 (545)
Q Consensus 88 ~aL~~qq~~~l~~ 100 (545)
.+|..|..+.|++
T Consensus 79 k~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 79 KALLEQMRQMLRS 91 (229)
T ss_pred HHHHHHHHHHHHH
Confidence 4577777777765
No 196
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.82 E-value=0.0052 Score=68.46 Aligned_cols=73 Identities=22% Similarity=0.170 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHH--H-HHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEec
Q 009048 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--I-PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g-~d~lv~apTGsGKTl~~~--l-p~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~ 109 (545)
..+.+.|.+|+..++.. ..+++.||+|+|||.+.. + -++..+.+++|++|+..-+.+.++.|...++.+.-+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg 232 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLG 232 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeC
Confidence 45789999999999877 567899999999995432 2 2334677899999999999999999988666655544
No 197
>PRK08181 transposase; Validated
Probab=96.79 E-value=0.011 Score=58.57 Aligned_cols=54 Identities=30% Similarity=0.405 Sum_probs=33.1
Q ss_pred CHHHHHHHHH----HHcCCCEEEEcCCCchHHHHHH-HH-HhcCCCeEEEEcChHHHHHH
Q 009048 40 RDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQ-IP-ALAKPGIVLVVSPLIALMEN 93 (545)
Q Consensus 40 r~~Q~~~i~~----il~g~d~lv~apTGsGKTl~~~-lp-~l~~~~~~lVi~P~~aL~~q 93 (545)
...|..++.. +..++++++.||+|+|||.... +. .+...+..++..+...|+.+
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 4566665532 3367899999999999994332 22 22334445555566666654
No 198
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.79 E-value=0.021 Score=53.82 Aligned_cols=127 Identities=20% Similarity=0.129 Sum_probs=69.1
Q ss_pred EEEEcCCCchHHHHHH-HHHh--cCCCeEEEEc--ChHHHHHHHHHHHHH-cCCceeEecccccHHHHHHHHHhhhcCCC
Q 009048 56 CFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~-lp~l--~~~~~~lVi~--P~~aL~~qq~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (545)
+++++|||+|||.+.. +.+. .++..+.+++ ..|.=+.+|...+.+ +|++............
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~------------- 70 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAE------------- 70 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHH-------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHH-------------
Confidence 5789999999996533 2221 2355555555 455555666666554 5655443322211111
Q ss_pred CccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhH
Q 009048 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQ 208 (545)
Q Consensus 130 ~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~ 208 (545)
..............++|+||-+.+... -......+..+.... |.-..+.++||......
T Consensus 71 ----------------~~~~~l~~~~~~~~D~vlIDT~Gr~~~----d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 71 ----------------IAREALEKFRKKGYDLVLIDTAGRSPR----DEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ----------------HHHHHHHHHHHTTSSEEEEEE-SSSST----HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ----------------HHHHHHHHHhhcCCCEEEEecCCcchh----hHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 011111111223478999999876432 233345566655554 55667999999988876
Q ss_pred HHHHHHh
Q 009048 209 KDVMESL 215 (545)
Q Consensus 209 ~~i~~~l 215 (545)
..+....
T Consensus 131 ~~~~~~~ 137 (196)
T PF00448_consen 131 EQALAFY 137 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6555544
No 199
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.73 E-value=0.014 Score=51.02 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
++.+++.||+|+|||....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5789999999999996543
No 200
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.72 E-value=0.00091 Score=73.39 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=53.3
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc---CCCcEEEeccccccc
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRKQVVVATVAFGMG 321 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~---g~~~VLVaT~a~~~G 321 (545)
.+.+++||..-....+-+...+...+ ....+.|..+...|+....+|.. .....|.+|.|-|.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 45678999888888888888888777 77889999999999999999982 456688999988766
No 201
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.69 E-value=0.0072 Score=61.69 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=34.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHc-C--CCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHH
Q 009048 28 KLLRWHFGHAQFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89 (545)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~il~-g--~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~a 89 (545)
+.|.++.|-..+-.- ...+..+++ | .++|+.+|+|+|||..+.+-+-..+....-++.+.+
T Consensus 21 ~~lde~vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~ 84 (436)
T COG2256 21 KSLDEVVGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS 84 (436)
T ss_pred CCHHHhcChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc
Confidence 344455553333211 223334443 4 378999999999998776655544444444444433
No 202
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.014 Score=62.03 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=33.0
Q ss_pred CCCCCcccccccccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCchHHHHHHHHH
Q 009048 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g---~d~lv~apTGsGKTl~~~lp~ 74 (545)
|..+..|+...-.+..|..+.-++.+...|+.. +..+ +-.++.||.|+|||.++.+-+
T Consensus 1 ~~~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~----------------i~~~ri~ha~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 1 MSGTHEVLSRKYRPQFFRDVIHQDLAIGALQNA----------------LKSGKIGHAYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred CCCCcchhHHHhCCCCHHHHhChHHHHHHHHHH----------------HHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 444555555544445554444444444444432 2233 347999999999997765443
No 203
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.67 E-value=0.0072 Score=66.91 Aligned_cols=77 Identities=26% Similarity=0.273 Sum_probs=52.9
Q ss_pred hcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHhc-----------------C--------------
Q 009048 33 HFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA-----------------K-------------- 77 (545)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l~-----------------~-------------- 77 (545)
.|.|. +++.|..-+..++ ...++++..|||+|||++.+-..+. +
T Consensus 17 ~fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 46665 7999998777665 4578999999999999876543331 0
Q ss_pred --------------CCeEEEEcChHHHHHHHHHHHHHcC--CceeEecc
Q 009048 78 --------------PGIVLVVSPLIALMENQVIGLKEKG--IAGEFLSS 110 (545)
Q Consensus 78 --------------~~~~lVi~P~~aL~~qq~~~l~~~g--i~~~~~~~ 110 (545)
.+.+++-+-|.+-+.|.++.+++.+ .+...+.+
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgS 144 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGS 144 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeec
Confidence 1235566667777788999998843 44444443
No 204
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.60 E-value=0.012 Score=61.47 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=45.3
Q ss_pred hcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHh-------cCCCeEEEEcChHHHHHHHHHHHH
Q 009048 33 HFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL-------AKPGIVLVVSPLIALMENQVIGLK 99 (545)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l-------~~~~~~lVi~P~~aL~~qq~~~l~ 99 (545)
.|.|+..+|.|.+=+..+. .+.++++.||+|+|||.+.+--++ ....+.|+-+-|..=++..+..|+
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHH
Confidence 5899999999998765543 456899999999999965432221 124567777766655555444444
No 205
>PRK06526 transposase; Provisional
Probab=96.58 E-value=0.012 Score=57.95 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=25.6
Q ss_pred HHcCCCEEEEcCCCchHHHHHHH--HHhcCCCeEEEEcChHHHHHH
Q 009048 50 VLSGRDCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMEN 93 (545)
Q Consensus 50 il~g~d~lv~apTGsGKTl~~~l--p~l~~~~~~lVi~P~~aL~~q 93 (545)
+..+.++++.||+|+|||..... -.+...+..+++.....|+.+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 33567999999999999964432 222233333444444445443
No 206
>PRK04296 thymidine kinase; Provisional
Probab=96.50 E-value=0.0063 Score=57.18 Aligned_cols=32 Identities=25% Similarity=0.103 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHH-HH--HhcCCCeEEEEcC
Q 009048 55 DCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSP 86 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp--~l~~~~~~lVi~P 86 (545)
-.++.+|+|+|||...+ +. +...+.+++++.|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 46789999999996543 21 2234667777766
No 207
>PRK08727 hypothetical protein; Validated
Probab=96.49 E-value=0.019 Score=55.79 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.5
Q ss_pred CCEEEEcCCCchHHHH
Q 009048 54 RDCFCLMPTGGGKSMC 69 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~ 69 (545)
..+++.||+|+|||-.
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3589999999999953
No 208
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.49 E-value=0.0089 Score=58.95 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCcEEEeccccccccccCC--------CcEEEEeCCCCCHHHHHHHHhhccCCCCCC
Q 009048 299 SVLDDWISSRKQVVVATVAFGMGIDRKD--------VRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (545)
Q Consensus 299 ~~~~~f~~g~~~VLVaT~a~~~GiD~p~--------v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~ 356 (545)
...+.|++|+..|+|-|.+.+.||.+.. -|+-|...+|+|.+..+|..||+.|.|+..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~ 117 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVS 117 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhcccccccccc
Confidence 4467899999999999999999997652 356677889999999999999999999854
No 209
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.47 E-value=0.0041 Score=62.81 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHH---Hhc----CCCeEEEEcChHHHHHHHHHHHHH
Q 009048 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 39 ~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp---~l~----~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
+++.|.++|.. ....++|.|+.|||||.+..-- .+. .+..+|++++|++.+.+...++..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 57889999998 6789999999999999765421 222 246799999999999888888776
No 210
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.45 E-value=0.061 Score=55.53 Aligned_cols=128 Identities=19% Similarity=0.223 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCchHHHHHH-HHH----hcCC-CeEEEEcCh-HHHHHHHHHHHHH-cCCceeEecccccHHHHHHHHHhh
Q 009048 53 GRDCFCLMPTGGGKSMCYQ-IPA----LAKP-GIVLVVSPL-IALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDL 124 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp~----l~~~-~~~lVi~P~-~aL~~qq~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~ 124 (545)
++.+.++||||.|||.... |++ +... ...||-.-+ |-=+.+|.....+ +|++.....+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~------------ 270 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPK------------ 270 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHH------------
Confidence 5678899999999996432 222 2223 334444433 3333444444433 555544333211
Q ss_pred hcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCc-CEEEEEcCC
Q 009048 125 DSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-PILALTATA 203 (545)
Q Consensus 125 ~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~-~~l~lTAT~ 203 (545)
.|...+. .....++|.||=|-+-.. | .....+|..+....+++ -.+.||||.
T Consensus 271 --------------------el~~ai~---~l~~~d~ILVDTaGrs~~---D-~~~i~el~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 271 --------------------ELAEAIE---ALRDCDVILVDTAGRSQY---D-KEKIEELKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred --------------------HHHHHHH---HhhcCCEEEEeCCCCCcc---C-HHHHHHHHHHHhccccceEEEEEecCc
Confidence 1211222 222368899998865221 1 11123344444433333 358999999
Q ss_pred ChhhHHHHHHHhcCCC
Q 009048 204 APKVQKDVMESLCLQN 219 (545)
Q Consensus 204 ~~~~~~~i~~~l~~~~ 219 (545)
-..+..+++..++.-+
T Consensus 324 K~~dlkei~~~f~~~~ 339 (407)
T COG1419 324 KYEDLKEIIKQFSLFP 339 (407)
T ss_pred chHHHHHHHHHhccCC
Confidence 9999999999887654
No 211
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.42 E-value=0.014 Score=60.73 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHH------HcCCCEEEEcCCCchHHHHHHH--HHhc-CCCeEEEEcChHHHH
Q 009048 38 QFRDKQLDAIQAV------LSGRDCFCLMPTGGGKSMCYQI--PALA-KPGIVLVVSPLIALM 91 (545)
Q Consensus 38 ~~r~~Q~~~i~~i------l~g~d~lv~apTGsGKTl~~~l--p~l~-~~~~~lVi~P~~aL~ 91 (545)
+|.+.|+++++.+ .++..+++.+|-|+|||..+-. -.+. .+..+++++||-.-+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHH
Confidence 3678899998888 5778999999999999986532 2222 345678888886544
No 212
>PLN03025 replication factor C subunit; Provisional
Probab=96.32 E-value=0.021 Score=58.35 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=29.7
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHH
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i 211 (545)
...+++|||+|.+.... -..|.+....+++.-.+.++++..+.....+
T Consensus 99 ~~kviiiDE~d~lt~~a------q~aL~~~lE~~~~~t~~il~~n~~~~i~~~L 146 (319)
T PLN03025 99 RHKIVILDEADSMTSGA------QQALRRTMEIYSNTTRFALACNTSSKIIEPI 146 (319)
T ss_pred CeEEEEEechhhcCHHH------HHHHHHHHhcccCCceEEEEeCCccccchhH
Confidence 36799999999986522 2344455555565555667776555444433
No 213
>PRK06921 hypothetical protein; Provisional
Probab=96.26 E-value=0.11 Score=51.61 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=25.1
Q ss_pred CCCEEEEcCCCchHHHHHH-H-HHhcCC-CeEEEEcChHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ-I-PALAKP-GIVLVVSPLIALMEN 93 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-l-p~l~~~-~~~lVi~P~~aL~~q 93 (545)
+..+++.||||+|||.... + -.+... +..++.++...++.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 5679999999999995332 2 223332 455555555555543
No 214
>PRK12377 putative replication protein; Provisional
Probab=96.24 E-value=0.029 Score=54.88 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=26.2
Q ss_pred CCEEEEcCCCchHHHHHH-H-HHhcCCCeEEEEcChHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ-I-PALAKPGIVLVVSPLIALMEN 93 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-l-p~l~~~~~~lVi~P~~aL~~q 93 (545)
..+++.||+|+|||.... + -.+...+..+++++..+|+.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 578999999999995332 2 223344555566666677654
No 215
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.23 E-value=0.0099 Score=51.53 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=25.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhcC-CC--eEEEEcChHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQIPALAK-PG--IVLVVSPLIAL 90 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~l~~-~~--~~lVi~P~~aL 90 (545)
+..+++.+|+|+|||.....-+... .. .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 4678999999999998665433332 22 47777766544
No 216
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.22 E-value=0.17 Score=53.73 Aligned_cols=56 Identities=23% Similarity=0.196 Sum_probs=35.6
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHH-h-CCCcCEEEEEcCCChhhHHHHHHHhcC
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-Y-LPDVPILALTATAAPKVQKDVMESLCL 217 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~-~-~~~~~~l~lTAT~~~~~~~~i~~~l~~ 217 (545)
..++|+||.+-.... + ......+..+.. . .|....+.++||........+...+..
T Consensus 299 ~~DlVlIDt~G~~~~---d-~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~ 356 (424)
T PRK05703 299 DCDVILIDTAGRSQR---D-KRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSR 356 (424)
T ss_pred CCCEEEEeCCCCCCC---C-HHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCC
Confidence 478999999865321 1 122234444544 1 233447889999998888887777653
No 217
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.19 E-value=0.076 Score=52.71 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=56.0
Q ss_pred HcCCCEEEEcCCCchHHHH-HHHHH--hcC-CCeEEEEcChHHHHHHHHHHHHHc--CCceeEec--ccccHHHHHHHHH
Q 009048 51 LSGRDCFCLMPTGGGKSMC-YQIPA--LAK-PGIVLVVSPLIALMENQVIGLKEK--GIAGEFLS--STQTMQVKTKIYE 122 (545)
Q Consensus 51 l~g~d~lv~apTGsGKTl~-~~lp~--l~~-~~~~lVi~P~~aL~~qq~~~l~~~--gi~~~~~~--~~~~~~~~~~~~~ 122 (545)
..|.-+++.||||+|||.. .++.. ... +..+++++--- -..+...++... ++...... .............
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFD 106 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHHH
Confidence 3567789999999999953 33322 223 56788877311 112333333221 33222111 1111222222222
Q ss_pred hhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009048 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (545)
Q Consensus 123 ~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (545)
.+.. .+.+ +++-.+..+.-......+........+++||||..+.+..
T Consensus 107 ~~~~-~~~l-~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 107 EFEG-TGRL-FMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HhcC-CCcE-EEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhc
Confidence 2221 1112 2222222222233444444444445689999999998864
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.13 Score=53.34 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=34.9
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCcCEEEEEcCCChhhHHHHHHHhc
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLC 216 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lTAT~~~~~~~~i~~~l~ 216 (545)
..++|+||-+-+... -......+..+... .|...++.+|||.......++...+.
T Consensus 320 ~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 320 RVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred CCCEEEEeCccccCc----CHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 478999998876432 12234445544433 34555677999988877666766654
No 219
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.17 E-value=0.034 Score=51.69 Aligned_cols=48 Identities=19% Similarity=0.071 Sum_probs=31.5
Q ss_pred EEEEcCCCchHHHHHH---HHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCc
Q 009048 56 CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~ 104 (545)
+++.+|+|+|||...+ ...+..+..+++++.- +-..+..+.+..+|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESLGWD 52 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHcCCC
Confidence 6899999999996432 3344556778888753 3345556666666554
No 220
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.15 E-value=0.083 Score=51.58 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHc-------C-CCEEEEcCCCchHHHHHH-H-HHhcCCCeEEEEcChHHHHH
Q 009048 41 DKQLDAIQAVLS-------G-RDCFCLMPTGGGKSMCYQ-I-PALAKPGIVLVVSPLIALME 92 (545)
Q Consensus 41 ~~Q~~~i~~il~-------g-~d~lv~apTGsGKTl~~~-l-p~l~~~~~~lVi~P~~aL~~ 92 (545)
+.|..++..+.+ + ..+++.+++|+|||.... + -.+...+..+++++...|+.
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 456656554431 1 468999999999995432 2 22333344445555555553
No 221
>PRK06893 DNA replication initiation factor; Validated
Probab=96.12 E-value=0.023 Score=55.07 Aligned_cols=47 Identities=13% Similarity=0.357 Sum_probs=26.5
Q ss_pred ccEEEEeccccccccCCCCH-HHHHHHHHHHHhCCCcCEEEEEcCCChhhH
Q 009048 159 LNLVAIDEAHCISSWGHDFR-PSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (545)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr-~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~ 208 (545)
.++++|||+|.+..... .. ..+.-+..+.. .+.+++++|++.+|...
T Consensus 92 ~dlLilDDi~~~~~~~~-~~~~l~~l~n~~~~--~~~~illits~~~p~~l 139 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEE-WELAIFDLFNRIKE--QGKTLLLISADCSPHAL 139 (229)
T ss_pred CCEEEEeChhhhcCChH-HHHHHHHHHHHHHH--cCCcEEEEeCCCChHHc
Confidence 67999999998753211 11 11111222222 24567788898877654
No 222
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.99 E-value=0.069 Score=51.95 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
..+++.||+|+|||-..
T Consensus 46 ~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 46 GYIYLWSREGAGRSHLL 62 (235)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57899999999999543
No 223
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.93 E-value=0.099 Score=46.82 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=22.9
Q ss_pred EEEEcCCCchHHHHHHHH---HhcCCCeEEEEcChHHH
Q 009048 56 CFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIAL 90 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~lp---~l~~~~~~lVi~P~~aL 90 (545)
+++.+|+|+|||.....- +...++.++++..-..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 578999999999644322 22246777777764443
No 224
>PRK14974 cell division protein FtsY; Provisional
Probab=95.93 E-value=0.36 Score=49.41 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=32.1
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCcCEEEEEcCCChhhHHHH
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDV 211 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lTAT~~~~~~~~i 211 (545)
..++|+||.|+++.. -...+..|..+... .|+..++.++||.........
T Consensus 222 ~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 222 GIDVVLIDTAGRMHT----DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred CCCEEEEECCCccCC----cHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 368999999998642 22333445444432 367778899998876555433
No 225
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.83 E-value=0.18 Score=54.84 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=76.4
Q ss_pred HHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCC-------cEEEecCCCCHHHHHHHHHHHH----cCCCcEEEec--
Q 009048 249 LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI-------SCAAYHAGLNDKARSSVLDDWI----SSRKQVVVAT-- 315 (545)
Q Consensus 249 l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~-------~~~~~h~~l~~~~R~~~~~~f~----~g~~~VLVaT-- 315 (545)
+.++...-+ +-+++|+++.+-..++.+...+.|+ +.+.+-..-+ -..+++.|. .|.-.+|+|.
T Consensus 621 ~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVG 696 (821)
T KOG1133|consen 621 ISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVG 696 (821)
T ss_pred HHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEec
Confidence 344444445 4599999999999999998887664 3344544444 244566665 3555677665
Q ss_pred cccccccccCC--CcEEEEeCCCCC--------------------------------HHHHHHHHhhccCCCCCCeEEEE
Q 009048 316 VAFGMGIDRKD--VRLVCHFNIPKS--------------------------------MEAFYQESGRAGRDQLPSKSLLY 361 (545)
Q Consensus 316 ~a~~~GiD~p~--v~~VI~~~~p~s--------------------------------~~~y~Qr~GRagR~g~~~~~i~~ 361 (545)
--+++|||+.| .|.|+..++|.. +...-|-+|||-|.-+.=.++++
T Consensus 697 GKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~L 776 (821)
T KOG1133|consen 697 GKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYL 776 (821)
T ss_pred cccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEE
Confidence 46899999987 689999998851 12335889999998765556666
Q ss_pred ecc
Q 009048 362 YGM 364 (545)
Q Consensus 362 ~~~ 364 (545)
++.
T Consensus 777 lD~ 779 (821)
T KOG1133|consen 777 LDK 779 (821)
T ss_pred ehh
Confidence 553
No 226
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.05 Score=61.56 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=68.6
Q ss_pred cchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC----C-CcEEE-ecCCCCHHHHHHHHHHHHcCCCcEEE
Q 009048 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----G-ISCAA-YHAGLNDKARSSVLDDWISSRKQVVV 313 (545)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~----g-~~~~~-~h~~l~~~~R~~~~~~f~~g~~~VLV 313 (545)
......+..+..+.-...++++++.++|..-+.++++.|.+. | ..+.. |||.|+.+++..++++|.+|..+|||
T Consensus 107 GvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIli 186 (1187)
T COG1110 107 GVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILI 186 (1187)
T ss_pred CCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEE
Confidence 333445555555555555678899999999999999988764 2 33333 99999999999999999999999999
Q ss_pred eccccc-cccc-cC--CCcEEEEeC
Q 009048 314 ATVAFG-MGID-RK--DVRLVCHFN 334 (545)
Q Consensus 314 aT~a~~-~GiD-~p--~v~~VI~~~ 334 (545)
+|+.|- .-.| +. ..++|+.-|
T Consensus 187 tTs~FL~k~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 187 TTSQFLSKRFEELSKLKFDFIFVDD 211 (1187)
T ss_pred EeHHHHHhhHHHhcccCCCEEEEcc
Confidence 998763 2232 22 355565444
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.64 E-value=0.15 Score=52.09 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=26.8
Q ss_pred CCCEEEEcCCCchHHHHHH--HHHhcCCCeEEEEcChHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMEN 93 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~--lp~l~~~~~~lVi~P~~aL~~q 93 (545)
++.+++.||||+|||.... ...+...+..++..+...|+.+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 5789999999999995332 2223344555566666666543
No 228
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.58 E-value=0.098 Score=56.56 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=34.6
Q ss_pred CCCCcccccccccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCchHHHHHHHHH
Q 009048 2 KKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g---~d~lv~apTGsGKTl~~~lp~ 74 (545)
..+..|+...-.+..|..+.-++.+.+.|+.. +..+ +..++.||.|+|||.++.+-+
T Consensus 5 ~~~y~~la~kyRP~~f~dliGq~~vv~~L~~a----------------i~~~ri~~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 5 SNQYIPFARKYRPSNFAELQGQEVLVKVLSYT----------------ILNDRLAGGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred cccccchhhhhCCCCHHHhcCcHHHHHHHHHH----------------HHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 34455555555555555555555555555432 2233 468999999999997765443
No 229
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.57 E-value=0.067 Score=56.68 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=16.1
Q ss_pred CCEEEEcCCCchHHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQIP 73 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp 73 (545)
..+++.||+|+|||.....-
T Consensus 37 ~~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARII 56 (413)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999765543
No 230
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.24 Score=51.41 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=30.9
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHh
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l 215 (545)
..++|+||++-.... + ......+..+.... +...++.++||.......++...+
T Consensus 215 ~~DlVLIDTaG~~~~---d-~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 215 NKHMVLIDTIGMSQR---D-RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred CCCEEEEcCCCCCcc---c-HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 368999999964321 0 11112233332221 233489999999888877665544
No 231
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.56 E-value=0.1 Score=50.76 Aligned_cols=118 Identities=18% Similarity=0.140 Sum_probs=56.0
Q ss_pred cCCCEEEEcCCCchHHHHHH-H--HHhcC-CCeEEEEc---ChHHHHHHHHHHHHHcCCceeEeccc-ccHHHHHHHHHh
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ-I--PALAK-PGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYED 123 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~-l--p~l~~-~~~~lVi~---P~~aL~~qq~~~l~~~gi~~~~~~~~-~~~~~~~~~~~~ 123 (545)
.|.-+++.|+||+|||...+ + -+... +..+++++ |...++....... .++....+..+ ............
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 89 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASE--SGISLSKLRTGSLSDEDWERLAEA 89 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHHHHHHH
Confidence 45667899999999995422 2 22233 67888888 4555554432221 23322111111 111111111111
Q ss_pred hhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009048 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (545)
Q Consensus 124 ~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (545)
..... ...+.+.....+....+...+........+++||||=.+.+..
T Consensus 90 ~~~~~-~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~ 137 (242)
T cd00984 90 IGELK-ELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSG 137 (242)
T ss_pred HHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCC
Confidence 11100 1223332222222233444444444444689999999987754
No 232
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.54 E-value=0.052 Score=46.99 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCeEEEE
Q 009048 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~l~~~~~~lVi 84 (545)
+++.||+|+|||.....-+-..+...+.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 58999999999976544333333333333
No 233
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.092 Score=59.68 Aligned_cols=45 Identities=27% Similarity=0.362 Sum_probs=26.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
+...++||||||.|.. .....|.+.....|..-+++|..|-...+
T Consensus 118 gk~KViIIDEAh~LT~------eAqNALLKtLEEPP~~vrFILaTTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR------SSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcCH------HHHHHHHHHHhccCCCeEEEEECCCchhc
Confidence 5578999999999864 23344555555545443444444444443
No 234
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.53 E-value=0.063 Score=59.00 Aligned_cols=51 Identities=20% Similarity=0.338 Sum_probs=30.2
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHH
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~ 212 (545)
.+..+++||||+|.++.- ....|.+.+...|..-++.|..|-...+...|.
T Consensus 122 ~gr~KViIIDEah~Ls~~------AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH------AFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred cCCceEEEEEChHhcCHH------HHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 455789999999998752 234444444444444455556665555444443
No 235
>PF13173 AAA_14: AAA domain
Probab=95.53 E-value=0.055 Score=47.13 Aligned_cols=41 Identities=24% Similarity=0.470 Sum_probs=27.1
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
-.+|+|||+|.+.+|. ..+..+....++.+++ +|++.....
T Consensus 62 ~~~i~iDEiq~~~~~~-------~~lk~l~d~~~~~~ii-~tgS~~~~l 102 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWE-------DALKFLVDNGPNIKII-LTGSSSSLL 102 (128)
T ss_pred CcEEEEehhhhhccHH-------HHHHHHHHhccCceEE-EEccchHHH
Confidence 5689999999998875 4555566655566554 455544433
No 236
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.49 E-value=0.075 Score=52.55 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=25.9
Q ss_pred HHHHHHHHHHc---C---CCEEEEcCCCchHHHHHHHHHhcC
Q 009048 42 KQLDAIQAVLS---G---RDCFCLMPTGGGKSMCYQIPALAK 77 (545)
Q Consensus 42 ~Q~~~i~~il~---g---~d~lv~apTGsGKTl~~~lp~l~~ 77 (545)
.|..++..+.+ + -+.++.+|.|+|||-+..+.+-+.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh
Confidence 67777666542 2 368999999999998877655443
No 237
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.11 Score=57.13 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=26.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhH
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~ 208 (545)
+...+|||||||.+.. .....|.+.....+...++.+++|-...+.
T Consensus 118 g~~kVIIIDEad~Lt~------~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 118 GRYKVFIIDEAHMLTR------EAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCceEEEEEChHhCCH------HHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 4568999999999863 222344444444334445556666544443
No 238
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.47 E-value=0.061 Score=54.65 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHH----cCC---CEEEEcCCCchHHHHH
Q 009048 36 HAQFRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCY 70 (545)
Q Consensus 36 ~~~~r~~Q~~~i~~il----~g~---d~lv~apTGsGKTl~~ 70 (545)
++.++|||..++..+. .|+ -.++.+|.|.||+..+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA 43 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA 43 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 4678999999988766 333 4789999999999654
No 239
>PRK08116 hypothetical protein; Validated
Probab=95.47 E-value=0.21 Score=49.62 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=23.7
Q ss_pred CEEEEcCCCchHHHHHHH--HHhcCCCeEEEEcChHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMEN 93 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~l--p~l~~~~~~lVi~P~~aL~~q 93 (545)
.+++.|++|+|||..... -.+...+..+++.+...|+..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 489999999999964332 222223444555556666543
No 240
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.46 E-value=0.095 Score=59.16 Aligned_cols=19 Identities=26% Similarity=0.280 Sum_probs=15.7
Q ss_pred CEEEEcCCCchHHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQIP 73 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~lp 73 (545)
++++.||+|+|||.....-
T Consensus 54 slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 54 SLILYGPPGVGKTTLARII 72 (725)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 7899999999999765443
No 241
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.44 E-value=0.11 Score=51.67 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
.+++++|+||-|||.+.
T Consensus 62 p~lLivG~snnGKT~Ii 78 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII 78 (302)
T ss_pred CceEEecCCCCcHHHHH
Confidence 48999999999999854
No 242
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.44 E-value=0.14 Score=54.66 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=26.5
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHH
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~ 209 (545)
..++++|||+|.+..+...-...+.-+..+.. .+. .+.+|++.++....
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k-~IIlts~~~p~~l~ 250 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGK-LIVISSTCAPQDLK 250 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCC-cEEEecCCCHHHHh
Confidence 37899999999987543222222222222222 233 46667766655443
No 243
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.11 Score=56.48 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=25.2
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCC
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~ 203 (545)
.+..+++||||||.++.- ....|.+.....|..-++.|.+|-
T Consensus 117 ~~~~kV~iIDE~~~ls~~------a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGH------SFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred cCCcEEEEEEChHhcCHH------HHHHHHHHHhccCCCeEEEEEECC
Confidence 355789999999998752 234455555555543334444443
No 244
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.40 E-value=0.099 Score=58.94 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=65.4
Q ss_pred CccEEEEecchhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~ 334 (545)
+.++||.++++.-+.++++.|++. |..+..+||+++..+|.....+..+|+.+|+|+|...-. +.++++.+||...
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 457999999999999999999874 888999999999999999999999999999999974332 5567888888655
No 245
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.57 Score=49.20 Aligned_cols=122 Identities=19% Similarity=0.165 Sum_probs=67.5
Q ss_pred CEEEEcCCCchHHHHHH-HHH---hcCCCeEEEEc--ChHHHHHHHHHHHH-HcCCceeEecccccHHHHHHHHHhhhcC
Q 009048 55 DCFCLMPTGGGKSMCYQ-IPA---LAKPGIVLVVS--PLIALMENQVIGLK-EKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~---l~~~~~~lVi~--P~~aL~~qq~~~l~-~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (545)
-+++++|||+|||.... +.. +..+..+.++. +.+..+.+|..... ..|++..... ..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~------~~---------- 288 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK------DI---------- 288 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH------HH----------
Confidence 36789999999996543 332 22344455544 56666666666553 3444332110 00
Q ss_pred CCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC----CCcCEEEEEcCC
Q 009048 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL----PDVPILALTATA 203 (545)
Q Consensus 128 ~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~----~~~~~l~lTAT~ 203 (545)
......+ .....++|+||=+-+... -......|..+.... |.-.++.|+||.
T Consensus 289 ----------------~~l~~~l----~~~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 289 ----------------KKFKETL----ARDGSELILIDTAGYSHR----NLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred ----------------HHHHHHH----HhCCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 0011111 123478899997654321 123344555555443 334679999999
Q ss_pred ChhhHHHHHHHhc
Q 009048 204 APKVQKDVMESLC 216 (545)
Q Consensus 204 ~~~~~~~i~~~l~ 216 (545)
......++...+.
T Consensus 345 ~~~~~~~~~~~f~ 357 (432)
T PRK12724 345 SYHHTLTVLKAYE 357 (432)
T ss_pred CHHHHHHHHHHhc
Confidence 9977777766654
No 246
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.38 E-value=0.073 Score=64.28 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHH--HHHHh---c--CCCeEEEEcChHHHHHHHHHHHHHcCCcee
Q 009048 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY--QIPAL---A--KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~--~lp~l---~--~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~ 106 (545)
.|++.|++|+..++.+ +-+++.+..|+|||... ++.++ . .+..++.+.||-.-+. .|.+.|+.+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~----~L~e~Gi~A~ 908 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG----EMRSAGVDAQ 908 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHH----HHHHhCchHh
Confidence 5899999999999965 56889999999999763 22222 1 2356778899876653 3444565543
No 247
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.31 E-value=0.072 Score=59.42 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=28.1
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
+..+++||||+|.+..- ....|.+.+...|..-++.|+.|-...+
T Consensus 118 gr~KVIIIDEah~LT~~------A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH------AFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred CCceEEEEeChhhCCHH------HHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 45789999999998752 2344555555555544555666644443
No 248
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.29 E-value=0.09 Score=57.82 Aligned_cols=46 Identities=24% Similarity=0.305 Sum_probs=26.2
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
.+...++||||+|.+..- ....|.+.....|..-++.|.+|-+..+
T Consensus 117 ~~~~kViIIDE~~~Lt~~------a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG------AFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred cCCeEEEEEECcccCCHH------HHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 455789999999998652 2234444444434333555555544333
No 249
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.27 E-value=0.089 Score=50.58 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=27.9
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC--CCcCEEEEEcCCChh---hHHHHHHHhc
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPK---VQKDVMESLC 216 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~--~~~~~l~lTAT~~~~---~~~~i~~~l~ 216 (545)
..++++||..|.+.... ..-..+..+...+ .+.++|+.|..+|.. ...++...+.
T Consensus 97 ~~DlL~iDDi~~l~~~~----~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQ----RTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp TSSEEEEETGGGGTTHH----HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHH
T ss_pred cCCEEEEecchhhcCch----HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHh
Confidence 37899999999986521 1112232332222 245555555455443 2345555553
No 250
>PRK05973 replicative DNA helicase; Provisional
Probab=95.24 E-value=0.29 Score=47.46 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=46.9
Q ss_pred CCChhHHHHHHHHHhcCCCCCCHHHHHH---------HHHHHcCCCEEEEcCCCchHHHHHH---HHHhcCCCeEEEEcC
Q 009048 19 PLHEKEALVKLLRWHFGHAQFRDKQLDA---------IQAVLSGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSP 86 (545)
Q Consensus 19 ~~~~~~~l~~~l~~~fg~~~~r~~Q~~~---------i~~il~g~d~lv~apTGsGKTl~~~---lp~l~~~~~~lVi~P 86 (545)
..++++.+...-.+ =||.+..-....+ .--+..|.-++|.|++|+|||...+ .-+...+..+++++-
T Consensus 22 ~~~~~~~~~~~a~~-~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 22 NIPLHEALDRIAAE-EGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCcHHHHHHHHHHH-hccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 35555555555444 4775433322222 1222344567899999999996433 233345667888873
Q ss_pred hHHHHHHHHHHHHHcCCc
Q 009048 87 LIALMENQVIGLKEKGIA 104 (545)
Q Consensus 87 ~~aL~~qq~~~l~~~gi~ 104 (545)
--. ..+..+++..+|+.
T Consensus 101 Ees-~~~i~~R~~s~g~d 117 (237)
T PRK05973 101 EYT-EQDVRDRLRALGAD 117 (237)
T ss_pred eCC-HHHHHHHHHHcCCC
Confidence 322 34556667666643
No 251
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.24 E-value=0.48 Score=53.78 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHH----cC---CCE-EEEcCCCchHHHHH
Q 009048 40 RDKQLDAIQAVL----SG---RDC-FCLMPTGGGKSMCY 70 (545)
Q Consensus 40 r~~Q~~~i~~il----~g---~d~-lv~apTGsGKTl~~ 70 (545)
|..|.+.|..++ .+ ..+ +|.|+||+|||++.
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 566666655443 22 244 59999999999864
No 252
>PRK04195 replication factor C large subunit; Provisional
Probab=95.24 E-value=0.12 Score=55.82 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCchHHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQIP 73 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp 73 (545)
.+.+++.||+|+|||.....-
T Consensus 39 ~~~lLL~GppG~GKTtla~al 59 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHAL 59 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 467999999999999765433
No 253
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.17 E-value=0.89 Score=51.88 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHH--HHHhc-CCCeEEEEcChHHHH
Q 009048 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALM 91 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g-~d~lv~apTGsGKTl~~~--lp~l~-~~~~~lVi~P~~aL~ 91 (545)
.|++.|.+|+..++.+ +-+++.+++|+|||.... .-++. .+..++++.||---+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa 409 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAA 409 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHH
Confidence 4889999999999875 556899999999996432 22222 366788888986654
No 254
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.17 E-value=0.62 Score=46.19 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=35.4
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhc
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~ 216 (545)
...++++||-+-+... -......+..+.... |...++.++||.......++.+.+.
T Consensus 153 ~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 153 ARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred CCCCEEEEECCCCCcC----CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhC
Confidence 3489999999976432 123344455544433 4444778999988877666666654
No 255
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.17 E-value=0.16 Score=57.39 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=65.7
Q ss_pred CCccEEEEecchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc-cccccccCCCcEEE
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GiD~p~v~~VI 331 (545)
.+.+++|.++|+.-+.+.++.+++ .|+++..+||+++..+|..+++.+.+|+.+|+|+|.+ +...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 345799999999999988887765 3789999999999999999999999999999999985 45567788999888
Q ss_pred E
Q 009048 332 H 332 (545)
Q Consensus 332 ~ 332 (545)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 256
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.15 E-value=0.092 Score=51.90 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
.++++.+|+|+|||....+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4689999999999976543
No 257
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.14 E-value=0.1 Score=52.79 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=29.5
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHc-C--CCEEEEcCCCchHHHHHHHHHhcC
Q 009048 28 KLLRWHFGHAQFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAK 77 (545)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~il~-g--~d~lv~apTGsGKTl~~~lp~l~~ 77 (545)
+.|..++|-+.+- .|.-.+..+.+ + ..+|+++|+|+|||..+-+-+...
T Consensus 135 ktL~dyvGQ~hlv-~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts 186 (554)
T KOG2028|consen 135 KTLDDYVGQSHLV-GQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS 186 (554)
T ss_pred chHHHhcchhhhc-CcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc
Confidence 4555555544332 23344444443 3 378999999999997665544443
No 258
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.12 E-value=0.66 Score=50.07 Aligned_cols=54 Identities=28% Similarity=0.212 Sum_probs=32.4
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHh
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l 215 (545)
..++|+||.+-.... + ......+..+........++.++++.......++.+.+
T Consensus 428 ~~DLVLIDTaG~s~~---D-~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 428 DYKLVLIDTAGMGQR---D-RALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred cCCEEEecCCCcchh---h-HHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHH
Confidence 478999999976421 1 11122333444444456688889998766666665554
No 259
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.11 E-value=0.35 Score=49.12 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=24.6
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
.++|||||+|.+.. ......+..+....+..-.+.+|++.....
T Consensus 101 ~~vliiDe~d~l~~-----~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 101 GKVIIIDEFDRLGL-----ADAQRHLRSFMEAYSKNCSFIITANNKNGI 144 (316)
T ss_pred CeEEEEECcccccC-----HHHHHHHHHHHHhcCCCceEEEEcCChhhc
Confidence 57899999998732 111234445555555433455566544333
No 260
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.05 E-value=0.22 Score=53.47 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=29.0
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHH
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~ 210 (545)
+...++||||+|.++.. ....|.+.....|..-++.|.+|-...+...
T Consensus 115 ~~~KVvIIDEah~Ls~~------A~NaLLK~LEePp~~v~fIlatte~~Kl~~t 162 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNS------AFNALLKTLEEPAPHVKFILATTEVKKIPVT 162 (491)
T ss_pred CCceEEEEeChHhCCHH------HHHHHHHHHhCCCCCeEEEEEeCChHHHHHH
Confidence 45789999999998752 2345555555555444455555654444333
No 261
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.04 E-value=0.21 Score=51.78 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
..+++.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999754
No 262
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.01 E-value=0.19 Score=51.44 Aligned_cols=33 Identities=18% Similarity=0.085 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHcC----CCEEEEcCCCchHHHHHH
Q 009048 39 FRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 39 ~r~~Q~~~i~~il~g----~d~lv~apTGsGKTl~~~ 71 (545)
++|||...+..+... +-.++.+|.|.|||..+.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 579999999988854 247899999999996543
No 263
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.97 E-value=0.19 Score=53.98 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=24.7
Q ss_pred CCEEEEcCCCchHHHHHHHHH--h-cC-CCeEEEEcChHHHHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQIPA--L-AK-PGIVLVVSPLIALMENQVIG 97 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~--l-~~-~~~~lVi~P~~aL~~qq~~~ 97 (545)
+.+++.||+|+|||.....-+ + .. .+..++.++...++.+.+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~ 196 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNA 196 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH
Confidence 358999999999996443222 1 12 13334444555555544333
No 264
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.96 E-value=0.19 Score=58.90 Aligned_cols=68 Identities=28% Similarity=0.241 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHH--HHh-cCCCeEEEEcChHHHHHHHHHHHHH-cCCceeEe
Q 009048 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g-~d~lv~apTGsGKTl~~~l--p~l-~~~~~~lVi~P~~aL~~qq~~~l~~-~gi~~~~~ 108 (545)
..|++.|.+++..+..+ +-+++.++.|+|||...-. -++ ..+..++.+.||-.-+. .|.+ .|+.+..+
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~----~L~e~~Gi~a~TI 452 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAE----GLEKEAGIQSRTL 452 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHH----HHHHhhCCCeeeH
Confidence 35899999999998654 5578999999999965332 222 24667888899866553 3333 46655443
No 265
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.94 E-value=0.18 Score=56.04 Aligned_cols=46 Identities=28% Similarity=0.379 Sum_probs=27.8
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
.+...++||||||.++.- ....|.+.....|..-++.|..|-+..+
T Consensus 117 ~g~~KV~IIDEah~Ls~~------a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRH------SFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred cCCCEEEEEechHhCCHH------HHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 456889999999998752 2345555555555443455555544433
No 266
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.93 E-value=0.11 Score=56.51 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=64.7
Q ss_pred CccEEEEecchhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~ 334 (545)
+.++||.++++.-+.++++.|++. |..+..+||+++..+|.....+..+|+.+|+|+|..+-. .-++++.+||...
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 457999999999999999999875 778999999999999999999889999999999975332 4567888888554
No 267
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.14 Score=55.09 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=14.7
Q ss_pred CEEEEcCCCchHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (545)
.+++.||+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999976544
No 268
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.73 E-value=0.085 Score=52.06 Aligned_cols=145 Identities=19% Similarity=0.178 Sum_probs=71.4
Q ss_pred CCEEEEcCCCchHHHHHHH---HHhcC-CCeEEEEcC---hHHHHHHHHHHHHHcCCceeEeccc-ccHHHHHHHHHhhh
Q 009048 54 RDCFCLMPTGGGKSMCYQI---PALAK-PGIVLVVSP---LIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLD 125 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l---p~l~~-~~~~lVi~P---~~aL~~qq~~~l~~~gi~~~~~~~~-~~~~~~~~~~~~~~ 125 (545)
.=+++.|+||.|||...+- -+... +..+++++. -..++.-.+..+. +++...+..+ ........+.....
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s--~v~~~~i~~g~l~~~e~~~~~~~~~ 97 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLS--GVPYNKIRSGDLSDEEFERLQAAAE 97 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHH--TSTHHHHHCCGCHHHHHHHHHHHHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhh--cchhhhhhccccCHHHHHHHHHHHH
Confidence 3467788999999964432 22233 478888885 3445444433332 3333222222 22232222222111
Q ss_pred cCCCCccEEE-ECcccccChhhHHHHHhhhcc-CCccEEEEeccccccccC--CCCHHHHH----HHHHHHHhCCCcCEE
Q 009048 126 SGKPSLRLLY-VTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWG--HDFRPSYR----KLSSLRNYLPDVPIL 197 (545)
Q Consensus 126 ~~~~~~~il~-~tpe~~~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g--~~fr~~~~----~l~~l~~~~~~~~~l 197 (545)
.-. ...+.+ .+|. +........+...... ..+++||||=.|.+.... .+-+..+. .|..+...+ ++|++
T Consensus 98 ~l~-~~~l~i~~~~~-~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~-~i~vi 174 (259)
T PF03796_consen 98 KLS-DLPLYIEDTPS-LTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL-NIPVI 174 (259)
T ss_dssp HHH-TSEEEEEESSS--BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH-TSEEE
T ss_pred HHh-hCcEEEECCCC-CCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc-CCeEE
Confidence 100 122333 3332 3333344444444433 678999999999998742 11222222 233333322 88888
Q ss_pred EEEcCC
Q 009048 198 ALTATA 203 (545)
Q Consensus 198 ~lTAT~ 203 (545)
++|..-
T Consensus 175 ~~sQln 180 (259)
T PF03796_consen 175 ALSQLN 180 (259)
T ss_dssp EEEEBS
T ss_pred EccccC
Confidence 888764
No 269
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.72 E-value=1.7 Score=50.83 Aligned_cols=54 Identities=24% Similarity=0.107 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCCchHHHHHH--HHHhc-CCCeEEEEcChHHHH
Q 009048 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALM 91 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d-~lv~apTGsGKTl~~~--lp~l~-~~~~~lVi~P~~aL~ 91 (545)
.|++.|.+|+..++.+++ +++.++.|+|||.... .-++. .+..++++.||---+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAA 403 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHH
Confidence 499999999999998765 5889999999997522 11222 366788889987654
No 270
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.71 E-value=0.24 Score=48.92 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=21.3
Q ss_pred HHHHHHHHHHH----cCC-CEEEEcCCCchHHHHHHH
Q 009048 41 DKQLDAIQAVL----SGR-DCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 41 ~~Q~~~i~~il----~g~-d~lv~apTGsGKTl~~~l 72 (545)
+.+.+++..+. .+. .+++.||+|+|||.....
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 44555555443 233 578999999999976553
No 271
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.19 Score=55.66 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=27.3
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
.+.++++||||+|.++.- .+..|.+.....|..-++.|.+|-+..+
T Consensus 122 ~g~~KV~IIDEvh~Ls~~------a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNT------AFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred cCCceEEEEEChhhCCHH------HHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 345789999999998752 2344444444444444455555654443
No 272
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.70 E-value=0.22 Score=48.00 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchHHHH
Q 009048 53 GRDCFCLMPTGGGKSMC 69 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (545)
+..+++.||+|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45789999999999953
No 273
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.68 E-value=0.026 Score=59.27 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=44.2
Q ss_pred CEEEEcCCCchHHHHHHHHHhcC-CCeEEEEcChHHHHHHHHHHHHHcCCceeEecc
Q 009048 55 DCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~ 110 (545)
+++++||||+|||.++.+|.+.. .+.+||+-|--++.......++..|-++..++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~nP 57 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFDP 57 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEcC
Confidence 47899999999999999988764 677888889999987666666666666665553
No 274
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.64 E-value=0.055 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=17.3
Q ss_pred CEEEEcCCCchHHHHHHHHHhc
Q 009048 55 DCFCLMPTGGGKSMCYQIPALA 76 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~l~ 76 (545)
++++.+|+|.|||..+.+-+-.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHhc
Confidence 6899999999999766554443
No 275
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.63 E-value=0.19 Score=53.03 Aligned_cols=16 Identities=25% Similarity=0.195 Sum_probs=13.6
Q ss_pred CEEEEcCCCchHHHHH
Q 009048 55 DCFCLMPTGGGKSMCY 70 (545)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (545)
.+++.||+|+|||...
T Consensus 138 ~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL 153 (405)
T ss_pred eEEEECCCCCcHHHHH
Confidence 5789999999999644
No 276
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.62 E-value=0.16 Score=62.28 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHH--HHHhc-----CCCeEEEEcChHHHHHHHHHHHHHcCCceeEe
Q 009048 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~--lp~l~-----~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~ 108 (545)
.|++.|++|+..++.+ +-+++.+..|+|||.... +.++. .+..++.+.||-.-+. .|+..|+.+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk----~L~e~Gi~A~TI 1042 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG----EMRSAGVDAQTL 1042 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH----HHHhcCcchhhH
Confidence 5899999999999976 457899999999996532 22322 1346788899976654 344556654433
No 277
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.61 E-value=0.41 Score=50.89 Aligned_cols=146 Identities=19% Similarity=0.179 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEEc---ChHHHHHHHHHHHHHcCCceeEecc-cccHHHHHHHHHhh
Q 009048 53 GRDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSS-TQTMQVKTKIYEDL 124 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp---~l~~~~~~lVi~---P~~aL~~qq~~~l~~~gi~~~~~~~-~~~~~~~~~~~~~~ 124 (545)
|.=+++.|+||.|||...+ +. ++..+..+++++ |...|+...+.. ..|++...+.. .........+....
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~--~~~v~~~~~~~~~l~~~~~~~~~~~~ 271 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLAS--KSGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHH--HcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3456788999999995443 22 123466788887 444444332222 13343322221 22222222222111
Q ss_pred hcCCCCccEEEECcccccChhhHHHHHhhhcc-CCccEEEEeccccccc-cCCCCHHHHHHH----HHHHHhCCCcCEEE
Q 009048 125 DSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISS-WGHDFRPSYRKL----SSLRNYLPDVPILA 198 (545)
Q Consensus 125 ~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~-~g~~fr~~~~~l----~~l~~~~~~~~~l~ 198 (545)
..-. +..+.+.....+.-......+...... +.+++||||=.|.+.. -+.+-...+..+ ..+... -++|+++
T Consensus 272 ~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke-~~i~Vi~ 349 (421)
T TIGR03600 272 DRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKE-LDVPVVL 349 (421)
T ss_pred HHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHH-hCCcEEE
Confidence 1110 123333322222222333333333322 2589999999988864 222211112222 222222 2788888
Q ss_pred EEcC
Q 009048 199 LTAT 202 (545)
Q Consensus 199 lTAT 202 (545)
+|-.
T Consensus 350 lsQl 353 (421)
T TIGR03600 350 LAQL 353 (421)
T ss_pred eccc
Confidence 8765
No 278
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.35 Score=47.75 Aligned_cols=120 Identities=16% Similarity=0.210 Sum_probs=67.5
Q ss_pred HHHHcCC-----CEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHH
Q 009048 48 QAVLSGR-----DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122 (545)
Q Consensus 48 ~~il~g~-----d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~ 122 (545)
+.+..|+ -+++.+|+|+|||..+-.-+-..+ .+.+-+.+-.|+..|+-.-.+
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGESEk---------------------- 212 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGESEK---------------------- 212 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhccHHH----------------------
Confidence 4455664 489999999999964433333333 566666777776554322111
Q ss_pred hhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHH-HHHHHH-HHHHhCC-----CcC
Q 009048 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP-SYRKLS-SLRNYLP-----DVP 195 (545)
Q Consensus 123 ~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~-~~~~l~-~l~~~~~-----~~~ 195 (545)
+...|..+...+..++|.|||++.+..-+.+-.. .-++|. +++-+.. +--
T Consensus 213 -----------------------LVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 213 -----------------------LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred -----------------------HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 2223334444455788999999977543222111 112221 1111111 346
Q ss_pred EEEEEcCCChhhHHHHHH
Q 009048 196 ILALTATAAPKVQKDVME 213 (545)
Q Consensus 196 ~l~lTAT~~~~~~~~i~~ 213 (545)
++.|.||-.|.+....++
T Consensus 270 vLVLgATNiPw~LDsAIR 287 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIR 287 (439)
T ss_pred eEEEecCCCchhHHHHHH
Confidence 899999998887665444
No 279
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.18 Score=52.52 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=14.6
Q ss_pred CEEEEcCCCchHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (545)
-+++.||.|+|||.....
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 358999999999976543
No 280
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.55 E-value=2 Score=54.14 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHH--HHHhc-CCCeEEEEcChHHHHH
Q 009048 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALME 92 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~--lp~l~-~~~~~lVi~P~~aL~~ 92 (545)
.|.+.|.+++..++.+ +-.++.++.|+|||.... +-++. .+..++++.|+-.-+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~ 488 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQ 488 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 4889999999999876 457899999999996532 22222 4668899999986543
No 281
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.55 E-value=0.14 Score=57.27 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=26.1
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCCh
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~ 205 (545)
.+...++||||||.+.. .....|.......|..-++.|.+|-+.
T Consensus 116 ~g~~KV~IIDEa~~LT~------~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK------SAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred cCCCEEEEEEChhhCCH------HHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 35578999999999864 223445445555444444555555333
No 282
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.79 Score=47.61 Aligned_cols=31 Identities=26% Similarity=0.551 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHH----cC---CCEEEEcCCCchHHHHH
Q 009048 40 RDKQLDAIQAVL----SG---RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 40 r~~Q~~~i~~il----~g---~d~lv~apTGsGKTl~~ 70 (545)
|..|.+.+..++ .| .++++.||||+|||.+.
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred cHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 455555444333 32 46999999999999764
No 283
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.49 E-value=0.16 Score=63.59 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHcCC--CEEEEcCCCchHHHHH------HHHHhc-CCCeEEEEcChHHHHHHHHHHHHHcCCcee
Q 009048 37 AQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCY------QIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~--d~lv~apTGsGKTl~~------~lp~l~-~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~ 106 (545)
..|++.|++|+..++.+. -+++.++.|+|||... +..++. .+..++.+.||-.-+. .|+..|+.+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~----~L~~~g~~a~ 1092 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVG----ELKSAGVQAQ 1092 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHH----HHHhcCCchH
Confidence 358999999999998764 4678899999999765 112222 3456888899966543 4445566543
No 284
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.43 E-value=0.3 Score=54.63 Aligned_cols=76 Identities=26% Similarity=0.222 Sum_probs=63.9
Q ss_pred CccEEEEecchhhHHHHHHHHHhC-C-CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~ 334 (545)
++.+||.++.+..+.++.+.|++. | ..+..||+++++.+|.....+..+|+.+|+|.|-.+- =.=+++...||..+
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-EeccCCCCEEEEEc
Confidence 457999999999999999999875 4 6789999999999999999999999999999997532 23455677777654
No 285
>PRK05642 DNA replication initiation factor; Validated
Probab=94.36 E-value=0.26 Score=47.82 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=24.7
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChh
Q 009048 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPK 206 (545)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~ 206 (545)
.++++||++|.+..... .. ..+-.+.+.+. .-..+++|+|.+|.
T Consensus 98 ~d~LiiDDi~~~~~~~~-~~---~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 98 YELVCLDDLDVIAGKAD-WE---EALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred CCEEEEechhhhcCChH-HH---HHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 57899999998753110 11 22333333322 23467888887664
No 286
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.33 E-value=0.3 Score=54.35 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=26.2
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
+..+++||||+|.++. ..+..|.+.....|..-.+.|+.|-...+
T Consensus 118 gk~KVIIIDEad~Ls~------~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 118 GKYKVYIIDEVHMLSK------SAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred CCcEEEEEECccccCH------HHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 4578999999998764 22344555555544433444555544433
No 287
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.42 Score=50.70 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=29.1
Q ss_pred cCCccEEEEecccccccc---CCCCHHHHHH-HHHHHHhCC-CcCEEEEEcCC
Q 009048 156 RGLLNLVAIDEAHCISSW---GHDFRPSYRK-LSSLRNYLP-DVPILALTATA 203 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~---g~~fr~~~~~-l~~l~~~~~-~~~~l~lTAT~ 203 (545)
...+.+||||+..++.+| |+.|.+...+ |.-+.+..| .-..++.-+|-
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TT 648 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTT 648 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecc
Confidence 345889999999999998 4556655544 333444443 33344444443
No 288
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.2 Score=54.65 Aligned_cols=41 Identities=27% Similarity=0.342 Sum_probs=24.5
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcC
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT 202 (545)
.+...++||||||.+..- ....|.+.....|+.-++.|..|
T Consensus 117 ~g~~kViIIDEa~~ls~~------a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ------SFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred cCCcEEEEEechhhccHH------HHHHHHHHHhcCCCCceEEEEEC
Confidence 445789999999998752 22345555555554433444334
No 289
>PRK09183 transposase/IS protein; Provisional
Probab=94.29 E-value=0.45 Score=46.96 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=25.7
Q ss_pred HHcCCCEEEEcCCCchHHHHHHHH---HhcCCCeEEEEcChHHHHH
Q 009048 50 VLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALME 92 (545)
Q Consensus 50 il~g~d~lv~apTGsGKTl~~~lp---~l~~~~~~lVi~P~~aL~~ 92 (545)
+..+.++++.||+|+|||.....- +...+..++++ +...|+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHH
Confidence 446788999999999999543322 22334445444 4445543
No 290
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.23 E-value=1 Score=47.30 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
.++++.||+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999764
No 291
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.16 E-value=0.27 Score=56.33 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=28.0
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChh
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~ 206 (545)
+..+++||||||.|..-+ ...|.+++...|..-++.|..|-...
T Consensus 119 ~~~KV~IIDEad~lt~~a------~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG------FNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred CCceEEEEechhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 457899999999997632 34566666666554444444454443
No 292
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.15 E-value=0.36 Score=54.08 Aligned_cols=75 Identities=21% Similarity=0.207 Sum_probs=64.8
Q ss_pred CccEEEEecchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc-ccccccCCCcEEEE
Q 009048 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVCH 332 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-~~GiD~p~v~~VI~ 332 (545)
+.+++|.++|+.-+.++++.+.+ .|+++..+||+++..+|..+++...+|+.+|||+|.++ ...+.+.++.+||.
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 45799999999999998887765 37899999999999999999999999999999999864 44577788888884
No 293
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.14 E-value=0.32 Score=52.58 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=43.2
Q ss_pred HHHHHHHHHHH-----cC----CCEEEEcCCCchHHHHHHHHHh----c---CCCeEEEEcChHHHHHHHHHHHHHc
Q 009048 41 DKQLDAIQAVL-----SG----RDCFCLMPTGGGKSMCYQIPAL----A---KPGIVLVVSPLIALMENQVIGLKEK 101 (545)
Q Consensus 41 ~~Q~~~i~~il-----~g----~d~lv~apTGsGKTl~~~lp~l----~---~~~~~lVi~P~~aL~~qq~~~l~~~ 101 (545)
|||+-++..++ .| +.+++..|=|.|||......++ . .+..++++.+++.-+...+..++.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 57777777766 22 3588999999999964332221 1 2457899999999988888777664
No 294
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.06 E-value=0.38 Score=47.47 Aligned_cols=51 Identities=20% Similarity=0.104 Sum_probs=31.1
Q ss_pred CCCEEEEcCCCchHHH-HHHHH--HhcCCCeEEEEc---ChHHHHHHHHHHHHHcCC
Q 009048 53 GRDCFCLMPTGGGKSM-CYQIP--ALAKPGIVLVVS---PLIALMENQVIGLKEKGI 103 (545)
Q Consensus 53 g~d~lv~apTGsGKTl-~~~lp--~l~~~~~~lVi~---P~~aL~~qq~~~l~~~gi 103 (545)
|.-+++.+|+|+|||. |.++. .+..+..+++++ |...+..+.......+|+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~ 92 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGV 92 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCC
Confidence 4668999999999995 43332 234566888888 333344344344444544
No 295
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.00 E-value=0.045 Score=59.05 Aligned_cols=56 Identities=30% Similarity=0.468 Sum_probs=45.4
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEEcChHHHHHHHHHHHHHcCCceeEec
Q 009048 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~ 109 (545)
.+++++||||||||..+.+|.+.. .+.+||.-|--+|.......+++.|-.+..++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEee
Confidence 369999999999999999998764 56788888999998877777777776665554
No 296
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.99 E-value=0.3 Score=53.99 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=27.0
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
+..+++||||+|.++.- ....|.+.....|+.-.+.|++|-....
T Consensus 117 gk~KV~IIDEVh~LS~~------A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH------SFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred CCcEEEEEechHhcCHH------HHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 45789999999998752 2244555555555433455555644433
No 297
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.99 E-value=0.51 Score=49.09 Aligned_cols=57 Identities=28% Similarity=0.260 Sum_probs=33.0
Q ss_pred HHHHHHHc-----CCCEEEEcCCCchHHHHHH-HHH-h-cCCCeEEEEcChHHHHHHHHHHHHHcC
Q 009048 45 DAIQAVLS-----GRDCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVSPLIALMENQVIGLKEKG 102 (545)
Q Consensus 45 ~~i~~il~-----g~d~lv~apTGsGKTl~~~-lp~-l-~~~~~~lVi~P~~aL~~qq~~~l~~~g 102 (545)
.-++.++. |.-+++.+++|+|||...+ +.. + ..++.+++++--... .|...+..++|
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~-~qi~~Ra~rlg 133 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESP-EQIKLRADRLG 133 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCH-HHHHHHHHHcC
Confidence 34556664 3567899999999996433 322 2 234678888754332 33333444444
No 298
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.99 E-value=0.46 Score=52.33 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=30.0
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHH
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i 211 (545)
.+...++||||||.+..- ....|.+.....|..-++.|..|-...+...|
T Consensus 116 ~~~~KVvIIDEah~Lt~~------A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA------GFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred cCCceEEEEECCCcCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 345789999999998752 33455555565554444444446554444333
No 299
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.98 E-value=2.6 Score=42.87 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=31.1
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHH----hCCCcCEEEEEcCCChhhHHHHHHH
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN----YLPDVPILALTATAAPKVQKDVMES 214 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~----~~~~~~~l~lTAT~~~~~~~~i~~~ 214 (545)
..+++|+||=+-++..-. .....+.++..+.. ..|.-.++.++||............
T Consensus 195 ~~~D~ViIDTaGr~~~~~-~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKT-NLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCH-HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 447899999887754211 11122233332221 2345557999999776655544433
No 300
>PHA02533 17 large terminase protein; Provisional
Probab=93.98 E-value=0.39 Score=52.42 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH-----hcCCCeEEEEcChHHHHHHHHHHHHH
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~-----l~~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
.|+|+|+..+..+..++-.++..+=..|||.+....+ ...+..+++++|+..-+...++.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3778999999988767767888899999997654322 23456899999999888777776654
No 301
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.92 E-value=0.51 Score=50.97 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=24.5
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcC
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT 202 (545)
.+...++||||||.+..- ....|.......|...++.+.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~------a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKE------AFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHH------HHHHHHHHHhcCCCCeEEEEEEC
Confidence 345789999999987642 22444444444444445555544
No 302
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.91 E-value=0.34 Score=54.12 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHH---HHhcCC--CeEEEEcChHHHHHHHHHH----HHHcCCce
Q 009048 37 AQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQI---PALAKP--GIVLVVSPLIALMENQVIG----LKEKGIAG 105 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~--d~lv~apTGsGKTl~~~l---p~l~~~--~~~lVi~P~~aL~~qq~~~----l~~~gi~~ 105 (545)
++....|.+.+..+++++ -+++.|.-|=|||.+.=+ .+.... ..++|.+|+.+=++..++- |..+|.+-
T Consensus 213 T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~ 292 (758)
T COG1444 213 TEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKR 292 (758)
T ss_pred ChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCcc
Confidence 333334444555555543 578899999999975432 222233 4899999998766544433 33344332
Q ss_pred eEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH
Q 009048 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (545)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (545)
......... -.......++|-|..|.... .. -+++|||||=.|.- --|.
T Consensus 293 ~v~~d~~g~--------~~~~~~~~~~i~y~~P~~a~-~~-------------~DllvVDEAAaIpl---------plL~ 341 (758)
T COG1444 293 KVAPDALGE--------IREVSGDGFRIEYVPPDDAQ-EE-------------ADLLVVDEAAAIPL---------PLLH 341 (758)
T ss_pred ccccccccc--------eeeecCCceeEEeeCcchhc-cc-------------CCEEEEehhhcCCh---------HHHH
Confidence 111111000 00011123557777776543 11 57999999987642 2333
Q ss_pred HHHHhCCCcCEEEEEcCCCh
Q 009048 186 SLRNYLPDVPILALTATAAP 205 (545)
Q Consensus 186 ~l~~~~~~~~~l~lTAT~~~ 205 (545)
.+.. .-+.++||.|...
T Consensus 342 ~l~~---~~~rv~~sTTIhG 358 (758)
T COG1444 342 KLLR---RFPRVLFSTTIHG 358 (758)
T ss_pred HHHh---hcCceEEEeeecc
Confidence 3333 3356899999753
No 303
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.90 E-value=0.56 Score=51.89 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=26.1
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCCh
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~ 205 (545)
....+++||||+|.++.. ....|.+.....|..-++.|.+|-..
T Consensus 130 ~a~~KVvIIDEad~Ls~~------a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA------AFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred cCCcEEEEEEChHhCCHH------HHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 345789999999998752 23455555555554434444445333
No 304
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.85 E-value=1.9 Score=45.93 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=28.5
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCcCEEEEEcCCChhhHH
Q 009048 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQK 209 (545)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lTAT~~~~~~~ 209 (545)
.++||||.|-+... -......+..+... .|+..++.+.||.......
T Consensus 176 ~DvVIIDTAGr~~~----d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~ 223 (437)
T PRK00771 176 ADVIIVDTAGRHAL----EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKN 223 (437)
T ss_pred CCEEEEECCCcccc----hHHHHHHHHHHHHHhcccceeEEEeccccHHHHH
Confidence 38899999965432 12223444555443 3566778888888755444
No 305
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.81 E-value=1.6 Score=45.24 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=30.4
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHh
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l 215 (545)
...++|+||=+-+... -......+..+.... |...++.++||.......++...+
T Consensus 284 ~~~D~VLIDTAGr~~~----d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f 339 (407)
T PRK12726 284 NCVDHILIDTVGRNYL----AEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKL 339 (407)
T ss_pred CCCCEEEEECCCCCcc----CHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhc
Confidence 3478899998865421 133334455544433 333356777777665555555443
No 306
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.80 E-value=0.078 Score=57.55 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=32.8
Q ss_pred hcCCC-CCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHh
Q 009048 33 HFGHA-QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL 75 (545)
Q Consensus 33 ~fg~~-~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l 75 (545)
.|+|. +|+.+|.+.+..+. +|+-.|+..|||+|||+..+-.++
T Consensus 9 ~F~fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal 56 (821)
T KOG1133|consen 9 EFPFPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL 56 (821)
T ss_pred ccCCCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH
Confidence 34432 47889999887654 789889999999999987665554
No 307
>PRK08760 replicative DNA helicase; Provisional
Probab=93.80 E-value=0.23 Score=53.59 Aligned_cols=146 Identities=18% Similarity=0.164 Sum_probs=68.1
Q ss_pred CCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEEcChHHHHHHHHHHHHHc--CCceeEec-ccccHHHHHHHHHhhhc
Q 009048 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKEK--GIAGEFLS-STQTMQVKTKIYEDLDS 126 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp---~l~~~~~~lVi~P~~aL~~qq~~~l~~~--gi~~~~~~-~~~~~~~~~~~~~~~~~ 126 (545)
.=+++.|.||.|||...+ +. +...+..+++++.--.- .|.+.++... ++....+. +..+......+......
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~-~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~ 308 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA-SQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKM 308 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH-HHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHH
Confidence 345778899999996443 22 12235567777642221 2444444432 23322222 12222222222222111
Q ss_pred CCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCHH-HH----HHHHHHHHhCCCcCEEEEE
Q 009048 127 GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRP-SY----RKLSSLRNYLPDVPILALT 200 (545)
Q Consensus 127 ~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~-~~----~~l~~l~~~~~~~~~l~lT 200 (545)
-. ...+.+....-+.-......+........+++||||=.+.+..-+. +-|. .+ +.|..+... -++|++++|
T Consensus 309 l~-~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAke-l~ipVi~ls 386 (476)
T PRK08760 309 LK-ETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKE-LNVPVIALS 386 (476)
T ss_pred Hh-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHH-hCCEEEEee
Confidence 11 1334433322233233444444444445689999999998864332 1121 12 222223222 278888887
Q ss_pred cC
Q 009048 201 AT 202 (545)
Q Consensus 201 AT 202 (545)
-.
T Consensus 387 QL 388 (476)
T PRK08760 387 QL 388 (476)
T ss_pred cc
Confidence 43
No 308
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.72 E-value=0.36 Score=46.23 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
+..+++.||+|+|||....
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999996543
No 309
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.70 E-value=0.55 Score=51.59 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=27.5
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
..+++||||||.+.. .....|.......|...++.|.+|-...+
T Consensus 119 ~~KVIIIDEad~Lt~------~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 119 KYKVYIIDEAHMLST------SAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred CcEEEEEechHhCCH------HHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 467899999999864 22345555556655555666655544333
No 310
>PRK06904 replicative DNA helicase; Validated
Probab=93.70 E-value=1.4 Score=47.51 Aligned_cols=145 Identities=20% Similarity=0.180 Sum_probs=64.5
Q ss_pred CCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEEcC---hHHHHHHHHHHHHHcCCceeEec-c-cccHHHHHHHHHhh
Q 009048 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSP---LIALMENQVIGLKEKGIAGEFLS-S-TQTMQVKTKIYEDL 124 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp---~l~~~~~~lVi~P---~~aL~~qq~~~l~~~gi~~~~~~-~-~~~~~~~~~~~~~~ 124 (545)
.=+++.|.||.|||...+ +. +...+..+++++. ...|+...+... .+++...+. + ..+......+....
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~~--s~v~~~~i~~g~~l~~~e~~~~~~a~ 299 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASL--SRVDQTKIRTGQNLDQQDWAKISSTV 299 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhh--CCCCHHHhccCCCCCHHHHHHHHHHH
Confidence 345678899999996433 11 2234567778774 333433322221 233322222 2 23333333322221
Q ss_pred hcCCCCccEEE-ECcccccChhhHHHHHhhhc-cCCccEEEEeccccccccCC-CCHH-HHHHHHHHHHhC---CCcCEE
Q 009048 125 DSGKPSLRLLY-VTPELTATPGFMSKLKKIHS-RGLLNLVAIDEAHCISSWGH-DFRP-SYRKLSSLRNYL---PDVPIL 197 (545)
Q Consensus 125 ~~~~~~~~il~-~tpe~~~t~~~~~~l~~~~~-~~~l~~iViDEaH~i~~~g~-~fr~-~~~~l~~l~~~~---~~~~~l 197 (545)
..-.....+.+ -+|. +.............. .+.+++||||=.+.+..-+. +-|. .+..+.+-++.+ -++|++
T Consensus 300 ~~l~~~~~l~I~d~~~-~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi 378 (472)
T PRK06904 300 GMFKQKPNLYIDDSSG-LTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVPVV 378 (472)
T ss_pred HHHhcCCCEEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 11100111222 1222 221223333333322 23589999999998864332 2222 222222211111 278888
Q ss_pred EEEc
Q 009048 198 ALTA 201 (545)
Q Consensus 198 ~lTA 201 (545)
++|-
T Consensus 379 ~lsQ 382 (472)
T PRK06904 379 ALSQ 382 (472)
T ss_pred EEEe
Confidence 8883
No 311
>PRK08840 replicative DNA helicase; Provisional
Probab=93.66 E-value=0.79 Score=49.21 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=64.0
Q ss_pred CCEEEEcCCCchHHHHHH-H---HHhcCCCeEEEEcChHHHHHHHHHHHHH--cCCceeEe-cccccHHHHHHHHHhhhc
Q 009048 54 RDCFCLMPTGGGKSMCYQ-I---PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQVKTKIYEDLDS 126 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-l---p~l~~~~~~lVi~P~~aL~~qq~~~l~~--~gi~~~~~-~~~~~~~~~~~~~~~~~~ 126 (545)
.=+++.|.||.|||...+ + .+...+..+++++.--. ..|.+.++-. .++....+ .+..+......+......
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 296 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP-AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGI 296 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 445678899999996543 1 12234566778873222 1233333322 23322212 222333333332221111
Q ss_pred CCCCccEEE-ECcccccChhhHHHHHhhhcc-CCccEEEEeccccccccCC-CCHH-HHHHH----HHHHHhCCCcCEEE
Q 009048 127 GKPSLRLLY-VTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRP-SYRKL----SSLRNYLPDVPILA 198 (545)
Q Consensus 127 ~~~~~~il~-~tpe~~~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~-~fr~-~~~~l----~~l~~~~~~~~~l~ 198 (545)
-.....+.+ -+|. +.-........+.... +.+++||||=.|.+..-+. +-|. .+..+ ..+... -++|+++
T Consensus 297 l~~~~~l~I~d~~~-~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAke-l~ipVi~ 374 (464)
T PRK08840 297 LMEKKNMYIDDSSG-LTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKE-LNVPVVA 374 (464)
T ss_pred HHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHH-hCCeEEE
Confidence 000112222 2222 1112233333333322 3589999999999864342 1221 12222 222222 2788888
Q ss_pred EEc
Q 009048 199 LTA 201 (545)
Q Consensus 199 lTA 201 (545)
+|-
T Consensus 375 LsQ 377 (464)
T PRK08840 375 LSQ 377 (464)
T ss_pred EEe
Confidence 883
No 312
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.64 E-value=0.6 Score=49.93 Aligned_cols=57 Identities=28% Similarity=0.247 Sum_probs=34.1
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHH-HHHHHh--cCCCeEEEEcChHHHHHHHHHHHHHcCC
Q 009048 46 AIQAVLS-----GRDCFCLMPTGGGKSMC-YQIPAL--AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (545)
Q Consensus 46 ~i~~il~-----g~d~lv~apTGsGKTl~-~~lp~l--~~~~~~lVi~P~~aL~~qq~~~l~~~gi 103 (545)
-++.++. |.-+++.+++|+|||.. .++..- ..+..+++++---. ..|...+..++|+
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees-~~qi~~ra~rlg~ 132 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES-ASQIKLRAERLGL 132 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc-HHHHHHHHHHcCC
Confidence 4556664 35678999999999953 333222 24667888875333 2344444555544
No 313
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.60 E-value=0.73 Score=49.33 Aligned_cols=45 Identities=13% Similarity=0.046 Sum_probs=25.0
Q ss_pred CCEEEEcCCCchHHHHHH-HHH-hc--CCCeEEEEcChHHHHHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ-IPA-LA--KPGIVLVVSPLIALMENQVIGL 98 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp~-l~--~~~~~lVi~P~~aL~~qq~~~l 98 (545)
+.+++.|++|+|||.... +.. +. ..+..++.++...++.+.+..+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 358899999999994322 211 11 2233333444456665555444
No 314
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.66 Score=47.07 Aligned_cols=75 Identities=9% Similarity=0.065 Sum_probs=39.1
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHH
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il--~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~ 91 (545)
...++..+-.++-++.+++..-..=. +-+.+..+- --+-+++.+|+|+|||+++-.-|-. ..-+.+=+.--+|+
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~---~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~-T~AtFIrvvgSElV 222 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLK---NPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ-TDATFIRVVGSELV 222 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhccccc---CHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc-cCceEEEeccHHHH
Confidence 44455555555555555554332211 112222221 2378999999999999965333322 23344444444555
Q ss_pred H
Q 009048 92 E 92 (545)
Q Consensus 92 ~ 92 (545)
+
T Consensus 223 q 223 (406)
T COG1222 223 Q 223 (406)
T ss_pred H
Confidence 3
No 315
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.60 E-value=0.13 Score=57.99 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHH-hc----CCCeEEEEcChHHHHHHHHHHHHH
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~--lp~-l~----~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
.|++.|.+|+.. ....++|.|+.|||||.+.. +.- +. .+..+|+|+.|+..+.+..+++.+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHH
Confidence 378999999876 35688999999999996533 222 21 245699999999999998888875
No 316
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.58 E-value=0.46 Score=52.22 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=25.1
Q ss_pred CEEEEcCCCchHHHHHH-HHH-hc--CCCeEEEEcChHHHHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ-IPA-LA--KPGIVLVVSPLIALMENQVIG 97 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~-l~--~~~~~lVi~P~~aL~~qq~~~ 97 (545)
.+++.+++|+|||.... +.. +. ..+..++.++...++++.+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a 362 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS 362 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH
Confidence 48899999999995332 211 11 124445555666666554443
No 317
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.54 E-value=0.61 Score=49.15 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=25.1
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCC
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~ 203 (545)
.+...++||||+|.+... ....+.+.....|...++.+.++-
T Consensus 125 ~~~~kvvIIdea~~l~~~------~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIA------AFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred cCCeEEEEEeChhhCCHH------HHHHHHHHHhcCCCCeEEEEEeCC
Confidence 345689999999998742 223444444444444455555553
No 318
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.52 E-value=1.7 Score=45.82 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=33.1
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhc
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~ 216 (545)
..++++||.+-+. +.-......+..+.... +...++.|+||.......++...+.
T Consensus 269 ~~d~VLIDTaGrs----qrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 269 GKHMVLIDTVGMS----QRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred CCCEEEecCCCCC----cchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 3678899986321 11112234444443322 3345789999999888888777664
No 319
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.48 E-value=0.29 Score=49.88 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=32.7
Q ss_pred hccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHH
Q 009048 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (545)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i 211 (545)
...+..+++|||+||.|..-. -..|.+....-|..-++.|+++-+..+...|
T Consensus 103 ~~~g~~KV~iI~~a~~m~~~A------aNaLLKtLEEPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTEAA------ANALLKTLEEPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred cccCCceEEEEechhhhCHHH------HHHHHHHhcCCCCCeEEEEEECChHhCchHH
Confidence 334668899999999987522 2445555555555556666766655554443
No 320
>CHL00176 ftsH cell division protein; Validated
Probab=93.47 E-value=0.96 Score=50.51 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
+.+++.+|+|+|||+....
T Consensus 217 ~gVLL~GPpGTGKT~LAra 235 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKA 235 (638)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999986543
No 321
>PRK09165 replicative DNA helicase; Provisional
Probab=93.45 E-value=0.39 Score=52.12 Aligned_cols=146 Identities=15% Similarity=0.140 Sum_probs=67.1
Q ss_pred CCEEEEcCCCchHHHHHHHHH--h--c--------------CCCeEEEEcChHHHHHHHHHHHHH--cCCceeEec-ccc
Q 009048 54 RDCFCLMPTGGGKSMCYQIPA--L--A--------------KPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQ 112 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~--l--~--------------~~~~~lVi~P~~aL~~qq~~~l~~--~gi~~~~~~-~~~ 112 (545)
.=+++.|+||.|||...+--+ . . .+..+++++.--.- .+.+.++-. .+++...+. +..
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~-~ql~~R~la~~s~v~~~~i~~~~l 296 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA-EQLATRILSEQSEISSSKIRRGKI 296 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH-HHHHHHHHHHhcCCCHHHHhcCCC
Confidence 346778899999996433111 1 1 13567777632221 334444433 244332222 222
Q ss_pred cHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC---CCHH-HHHHH----
Q 009048 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH---DFRP-SYRKL---- 184 (545)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~---~fr~-~~~~l---- 184 (545)
+......+......-. ...+.+...--+.-......+........+++||||=.|.+..-+. +-|. .+..+
T Consensus 297 ~~~e~~~l~~a~~~l~-~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~L 375 (497)
T PRK09165 297 SEEDFEKLVDASQELQ-KLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGL 375 (497)
T ss_pred CHHHHHHHHHHHHHHh-cCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHH
Confidence 3333333222221111 1233333221222223334444444445689999999998864332 2221 22222
Q ss_pred HHHHHhCCCcCEEEEEcC
Q 009048 185 SSLRNYLPDVPILALTAT 202 (545)
Q Consensus 185 ~~l~~~~~~~~~l~lTAT 202 (545)
..+... -++|++++|-.
T Consensus 376 K~lAke-l~ipVi~lsQL 392 (497)
T PRK09165 376 KALAKE-LNIPVIALSQL 392 (497)
T ss_pred HHHHHH-hCCeEEEeecc
Confidence 222222 27888887763
No 322
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.45 E-value=2.1 Score=41.37 Aligned_cols=51 Identities=20% Similarity=0.105 Sum_probs=33.1
Q ss_pred CCCEEEEcCCCchHHHHH-HH--HHhcCCCeEEEEcChHHHHHHHHHHHHHcCCc
Q 009048 53 GRDCFCLMPTGGGKSMCY-QI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~-~l--p~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~ 104 (545)
|.-+++.+++|+|||... ++ -.+..+..+++++--... .+.++++.++|+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~-~~~~~~~~~~g~~ 78 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTS-KSYLKQMESVKID 78 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCH-HHHHHHHHHCCCC
Confidence 456788999999999533 33 234456777777754333 4566667777654
No 323
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.42 E-value=0.29 Score=53.04 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=65.6
Q ss_pred HHHHHHHHcC-----CCEEEEcCCCchHHHHHH---HHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHH
Q 009048 44 LDAIQAVLSG-----RDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ 115 (545)
Q Consensus 44 ~~~i~~il~g-----~d~lv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~ 115 (545)
...++.++.| .-+++.+|+|+|||...+ .-++.++.++++++- -+-..|...++.++|+...
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~-eEs~~~i~~~~~~lg~~~~--------- 318 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAY-EESRAQLLRNAYSWGIDFE--------- 318 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe-eCCHHHHHHHHHHcCCChH---------
Confidence 3456666644 578999999999995432 233345668888873 3333566666777765321
Q ss_pred HHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccc
Q 009048 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (545)
Q Consensus 116 ~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (545)
.....+ .+.++...|+...-..+...+.........++||||=..-+
T Consensus 319 ------~~~~~g--~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 319 ------EMEQQG--LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred ------HHhhCC--cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 001111 25555555665544456666655555556789999987654
No 324
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.41 E-value=0.76 Score=48.33 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=17.5
Q ss_pred CCCEEEEcCCCchHHHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~ 74 (545)
.+.+++.+|+|+|||+..-.-+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA 200 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVA 200 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4789999999999998654433
No 325
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.38 E-value=0.88 Score=46.49 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=23.8
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCC
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~ 203 (545)
...+|||||+|.+... ....|..+....+....+.++++-
T Consensus 125 ~~~vlilDe~~~l~~~------~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 125 DYKTILLDNAEALRED------AQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred CCcEEEEeCcccCCHH------HHHHHHHHHHhccCCCeEEEEeCC
Confidence 3578999999987541 123445555555544445556553
No 326
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.37 E-value=0.074 Score=58.65 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=48.3
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEEcChHHHHHHHHHHHHHcCCceeEecc
Q 009048 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~ 110 (545)
.++++.||||||||..+.+|.+.. ++.+||+=|--++........++.|-++..++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfdP 216 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEP 216 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeC
Confidence 478999999999999999999765 678888889999998888888888877766654
No 327
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.33 E-value=0.97 Score=48.27 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+.+++.||+|+|||....
T Consensus 131 n~l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CeEEEEcCCCCcHHHHHH
Confidence 358999999999996543
No 328
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.32 E-value=0.13 Score=49.95 Aligned_cols=51 Identities=16% Similarity=-0.014 Sum_probs=34.3
Q ss_pred CCCEEEEcCCCchHHHH-HH--HHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCc
Q 009048 53 GRDCFCLMPTGGGKSMC-YQ--IPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~-~~--lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~ 104 (545)
|.-+++.+|+|+|||.. .+ ...+..+..+++++- -+-..+..+++..+|..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHHhCCC
Confidence 46789999999999963 33 333456777888873 34445566666666654
No 329
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.30 E-value=0.44 Score=53.04 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
+..|+.||.|+|||.....
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4679999999999976543
No 330
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.27 E-value=0.35 Score=49.68 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=31.8
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHH
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~ 212 (545)
.+..+++|||+||.|..-. -..|.+....-|..-++.|+++-+..+...|.
T Consensus 130 ~~~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~ 180 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAA------ANALLKTLEEPPPGTVFLLVSARIDRLLPTIL 180 (342)
T ss_pred cCCceEEEEechhhcCHHH------HHHHHHHhcCCCcCcEEEEEECChhhCcHHHH
Confidence 4557899999999986522 24455555555555566666665555544443
No 331
>PRK05595 replicative DNA helicase; Provisional
Probab=93.26 E-value=0.37 Score=51.54 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=71.8
Q ss_pred HHHHHHHHcC----CCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEEcChHHHHHHHHHHHHH--cCCceeEecc-cc
Q 009048 44 LDAIQAVLSG----RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS-TQ 112 (545)
Q Consensus 44 ~~~i~~il~g----~d~lv~apTGsGKTl~~~-lp---~l~~~~~~lVi~P~~aL~~qq~~~l~~--~gi~~~~~~~-~~ 112 (545)
...++.+..| .=+++.|.||.|||...+ +. +...+..+++++.--. ..+.+.++-. .+++...+.. ..
T Consensus 188 ~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms-~~~l~~R~~a~~~~v~~~~~~~~~l 266 (444)
T PRK05595 188 FRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS-KEQLAYKLLCSEANVDMLRLRTGNL 266 (444)
T ss_pred hHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC-HHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 3344555443 345678899999996443 22 2234667888874211 1223333222 2343322221 22
Q ss_pred cHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC-CCCHH-HHHHH----HH
Q 009048 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-HDFRP-SYRKL----SS 186 (545)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g-~~fr~-~~~~l----~~ 186 (545)
.......+......- ....+.+-.+.-+.-......+........+++||||=.|.+..-+ .+-|. .+..+ ..
T Consensus 267 ~~~e~~~~~~~~~~l-~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~ 345 (444)
T PRK05595 267 EDKDWENIARASGPL-AAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKA 345 (444)
T ss_pred CHHHHHHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHH
Confidence 222222222222111 0123333222122223344444444444558999999999987432 12232 22222 22
Q ss_pred HHHhCCCcCEEEEEcC
Q 009048 187 LRNYLPDVPILALTAT 202 (545)
Q Consensus 187 l~~~~~~~~~l~lTAT 202 (545)
+... -++|++++|-.
T Consensus 346 lAke-~~i~vi~lsQL 360 (444)
T PRK05595 346 LAKE-MECPVIALSQL 360 (444)
T ss_pred HHHH-hCCeEEEeecc
Confidence 2222 27888888754
No 332
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.26 E-value=0.3 Score=49.41 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchHHHH
Q 009048 53 GRDCFCLMPTGGGKSMC 69 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (545)
++.+++.||+|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999953
No 333
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.25 E-value=0.13 Score=58.52 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHH-hc----CCCeEEEEcChHHHHHHHHHHHHHc
Q 009048 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~--lp~-l~----~~~~~lVi~P~~aL~~qq~~~l~~~ 101 (545)
..|++.|.+|+.. ....++|.|..|||||.+.. +.- +. .+..+|+|+.|+..+.+..+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999976 35689999999999996532 222 22 2457999999999999888887763
No 334
>PRK05748 replicative DNA helicase; Provisional
Probab=93.23 E-value=0.47 Score=50.87 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=65.3
Q ss_pred CCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEEc---ChHHHHHHHHHHHHHcCCceeEe-cccccHHHHHHHHHhhh
Q 009048 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLD 125 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp---~l~~~~~~lVi~---P~~aL~~qq~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~~~ 125 (545)
.-+++.|+||.|||...+ +. +...+..+++++ |...|+...+... .++....+ .+.........+.....
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~~~--~~v~~~~i~~~~l~~~e~~~~~~a~~ 281 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAE--GNIDAQRLRTGQLTDDDWPKLTIAMG 281 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 446788899999995433 21 122355677776 3334433322211 12222211 11222222222222111
Q ss_pred cCCCCccEEEE-CcccccChhhHHHHHhhhccC-CccEEEEeccccccccCC--CCHHHHHHHHHHHHhC------CCcC
Q 009048 126 SGKPSLRLLYV-TPELTATPGFMSKLKKIHSRG-LLNLVAIDEAHCISSWGH--DFRPSYRKLSSLRNYL------PDVP 195 (545)
Q Consensus 126 ~~~~~~~il~~-tpe~~~t~~~~~~l~~~~~~~-~l~~iViDEaH~i~~~g~--~fr~~~~~l~~l~~~~------~~~~ 195 (545)
... +..+.+. +| -+........+....... .+++||||=.|.+..-+. +-|. ..+..+.+.+ -++|
T Consensus 282 ~l~-~~~~~i~d~~-~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~--~~i~~i~~~LK~lAke~~i~ 357 (448)
T PRK05748 282 SLS-DAPIYIDDTP-GIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQ--QEVSEISRSLKALAKELKVP 357 (448)
T ss_pred HHh-cCCEEEECCC-CCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHH--HHHHHHHHHHHHHHHHhCCe
Confidence 111 1223332 22 222223444444443333 689999999998864332 1121 2222222222 2788
Q ss_pred EEEEEcCC
Q 009048 196 ILALTATA 203 (545)
Q Consensus 196 ~l~lTAT~ 203 (545)
++++|-.-
T Consensus 358 vi~lsQln 365 (448)
T PRK05748 358 VIALSQLS 365 (448)
T ss_pred EEEecccC
Confidence 88887754
No 335
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.22 E-value=0.48 Score=51.80 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=15.1
Q ss_pred CEEEEcCCCchHHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQIP 73 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~lp 73 (545)
-.|+.||.|+|||.++.+-
T Consensus 40 a~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARIL 58 (527)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3589999999999766543
No 336
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.22 E-value=0.14 Score=58.42 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHh-c----CCCeEEEEcChHHHHHHHHHHHHHc
Q 009048 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-A----KPGIVLVVSPLIALMENQVIGLKEK 101 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~--lp~l-~----~~~~~lVi~P~~aL~~qq~~~l~~~ 101 (545)
..|++.|.+|+... ...++|.|..|||||.+.. +.-+ . .+..+|+|+.|+..+.+..+++.++
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 35999999999753 4689999999999996532 2222 1 2457999999999999988888763
No 337
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.13 E-value=1.1 Score=43.33 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=32.3
Q ss_pred cCCCEEEEcCCCchHHHH-HHHH--HhcCCCeEEEEcChHHHHHHHHHHHHHcCC
Q 009048 52 SGRDCFCLMPTGGGKSMC-YQIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~-~~lp--~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi 103 (545)
.|.-+++.+|+|+|||.. .++. .+..+..+++++..... .+..+.+.++|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~-~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTT-TEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHHhCC
Confidence 467789999999999965 3332 23456678888743322 444555555554
No 338
>PRK06321 replicative DNA helicase; Provisional
Probab=93.13 E-value=1.1 Score=48.29 Aligned_cols=155 Identities=14% Similarity=0.170 Sum_probs=72.7
Q ss_pred HHHHHHHcC---CC-EEEEcCCCchHHHHHH-HH---HhcCCCeEEEEc---ChHHHHHHHHHHHHHcCCceeEec-ccc
Q 009048 45 DAIQAVLSG---RD-CFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQ 112 (545)
Q Consensus 45 ~~i~~il~g---~d-~lv~apTGsGKTl~~~-lp---~l~~~~~~lVi~---P~~aL~~qq~~~l~~~gi~~~~~~-~~~ 112 (545)
..++.+..| .+ +++.|.||.|||...+ +. +...+..+++++ |...|+...... ..+++...+. +..
T Consensus 214 ~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~--~s~v~~~~i~~~~l 291 (472)
T PRK06321 214 IDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICS--RSEVESKKISVGDL 291 (472)
T ss_pred HHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHh--hcCCCHHHhhcCCC
Confidence 345555544 34 5678899999996433 21 122355677776 455555433221 1233332222 222
Q ss_pred cHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC--CCHHHHHHHHHHHHh
Q 009048 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH--DFRPSYRKLSSLRNY 190 (545)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~--~fr~~~~~l~~l~~~ 190 (545)
+......+......-. +..+.+.....+....+...+........+++||||=.+.+..-+. ........+..+.+.
T Consensus 292 ~~~e~~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~ 370 (472)
T PRK06321 292 SGRDFQRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRM 370 (472)
T ss_pred CHHHHHHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHH
Confidence 3333332222222111 1233332111222223444444444445689999999999864321 111112223332222
Q ss_pred C------CCcCEEEEEcC
Q 009048 191 L------PDVPILALTAT 202 (545)
Q Consensus 191 ~------~~~~~l~lTAT 202 (545)
+ -++|++++|-.
T Consensus 371 LK~lAkel~vpVi~lsQL 388 (472)
T PRK06321 371 LKNLARELNIPILCLSQL 388 (472)
T ss_pred HHHHHHHhCCcEEEEeec
Confidence 2 27888888765
No 339
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.12 E-value=0.33 Score=49.32 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=33.5
Q ss_pred ccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHH
Q 009048 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (545)
Q Consensus 155 ~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~ 212 (545)
..+..+++|||+||.+..- .-..|.+....-|..-++.|.++-+..+...|.
T Consensus 105 ~~~~~kV~iI~~ae~m~~~------AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 105 QLNGYRLFVIEPADAMNES------ASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred ccCCceEEEecchhhhCHH------HHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 3456889999999998752 224455555555555566777776665555443
No 340
>PHA02542 41 41 helicase; Provisional
Probab=93.04 E-value=0.99 Score=48.57 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=70.2
Q ss_pred HHHHHHHH-cC---CC-EEEEcCCCchHHHHHHHHH---hcCCCeEEEEc---ChHHHHHHHHHHHHHcCCceeEecccc
Q 009048 44 LDAIQAVL-SG---RD-CFCLMPTGGGKSMCYQIPA---LAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSSTQ 112 (545)
Q Consensus 44 ~~~i~~il-~g---~d-~lv~apTGsGKTl~~~lp~---l~~~~~~lVi~---P~~aL~~qq~~~l~~~gi~~~~~~~~~ 112 (545)
...++.+. .| .+ +++.|+||.|||...+--+ ...+..+++++ |...|+....... .++....+.. .
T Consensus 176 ~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl~a~~--~~i~~~~l~~-l 252 (473)
T PHA02542 176 LEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRIDANL--LDVSLDDIDD-L 252 (473)
T ss_pred cHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHH--cCCCHHHHhh-c
Confidence 45566666 33 23 5678899999996544222 23456777776 4444443322221 2333221211 1
Q ss_pred cHHHHHHHHHhhhcCCCCccE-EEECcc-cccChhhHHHHHhhhccC--CccEEEEecccccccc-----CCCCHHHH--
Q 009048 113 TMQVKTKIYEDLDSGKPSLRL-LYVTPE-LTATPGFMSKLKKIHSRG--LLNLVAIDEAHCISSW-----GHDFRPSY-- 181 (545)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~i-l~~tpe-~~~t~~~~~~l~~~~~~~--~l~~iViDEaH~i~~~-----g~~fr~~~-- 181 (545)
...........+..-. ...+ ++..|. .+....+...+.+..... .+++||||=.+.+..- +.+-...+
T Consensus 253 ~~~~~~~~~~~~~~~~-~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~ 331 (473)
T PHA02542 253 SKAEYKAKMEKLRSKT-QGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVSSENSYTYVKA 331 (473)
T ss_pred CHHHHHHHHHHHHHHh-CCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCCCCChHHHHHH
Confidence 2222222222221100 1122 222222 222233444444333222 3899999999988521 11111112
Q ss_pred --HHHHHHHHhCCCcCEEEEEcCC
Q 009048 182 --RKLSSLRNYLPDVPILALTATA 203 (545)
Q Consensus 182 --~~l~~l~~~~~~~~~l~lTAT~ 203 (545)
+.|..+...+ ++|++++|-.-
T Consensus 332 Isr~LK~lAkel-~vpVi~lsQLn 354 (473)
T PHA02542 332 IAEELRGLAVEH-DVVVWTAAQTT 354 (473)
T ss_pred HHHHHHHHHHHh-CCeEEEEEeeC
Confidence 2222222222 78888887663
No 341
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=1.1 Score=48.83 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=27.0
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~q 93 (545)
+-+++.+|+|+|||+.....+...+...+-+... +|+..
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk 315 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSK 315 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhcc
Confidence 4689999999999998777666555444444433 66543
No 342
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.98 E-value=0.15 Score=47.37 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=25.3
Q ss_pred cCCCEEEEcCCCchHHHHHHH--HHhcCCCeEEEEcChHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMEN 93 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l--p~l~~~~~~lVi~P~~aL~~q 93 (545)
+++++++.+|+|+|||..+.. -.+...+..+..++..+|+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 567899999999999954332 123335555555667777654
No 343
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.91 E-value=3 Score=44.08 Aligned_cols=120 Identities=12% Similarity=0.071 Sum_probs=61.9
Q ss_pred CEEEEcCCCchHHHHHH-HHHh-c-CCCeEEEEc--ChHHHHHHHHHHHHH-cCCceeEecccccHHHHHHHHHhhhcCC
Q 009048 55 DCFCLMPTGGGKSMCYQ-IPAL-A-KPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~l-~-~~~~~lVi~--P~~aL~~qq~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (545)
-+.+++++|+|||.+.. +... . .+.++++|+ |.+.-+.+|...+.. .+++...........
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~------------- 168 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPV------------- 168 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHH-------------
Confidence 35789999999985433 3332 2 344566655 566666666665544 444433222111110
Q ss_pred CCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhh
Q 009048 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKV 207 (545)
Q Consensus 129 ~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~ 207 (545)
.++. ..+.... ....++|+||=+-+... -......+..+.... |...++.++||.....
T Consensus 169 -----------~i~~----~~l~~~~-~~~~DvViIDTaGr~~~----d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a 228 (429)
T TIGR01425 169 -----------KIAS----EGVEKFK-KENFDIIIVDTSGRHKQ----EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA 228 (429)
T ss_pred -----------HHHH----HHHHHHH-hCCCCEEEEECCCCCcc----hHHHHHHHHHHhhhcCCcEEEEEeccccChhH
Confidence 0000 0111111 12378899998876432 223344555554433 4556788888876544
No 344
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.90 E-value=4.3 Score=40.31 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=28.9
Q ss_pred CCEEEEcCCCchHHHHHH-HHH-h-cCCCeEEEEc--ChHHHHHHHHHHHH-HcCCc
Q 009048 54 RDCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVS--PLIALMENQVIGLK-EKGIA 104 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp~-l-~~~~~~lVi~--P~~aL~~qq~~~l~-~~gi~ 104 (545)
+-+.+++|+|+|||.... +.. + ..+.+++++. +.+.-..+|...+. ..|++
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~ 129 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVD 129 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeE
Confidence 346678999999996543 322 2 2345666665 44554455555443 34544
No 345
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.88 E-value=0.75 Score=53.56 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=64.5
Q ss_pred CccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc-ccccccCCCcEEEE
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVCH 332 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-~~GiD~p~v~~VI~ 332 (545)
+.+++|.++|+.-|.+.++.+++. ++++..++|..+..++..+++.+.+|+++|||+|..+ ...+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 457999999999999999887763 6778899999999999999999999999999999854 45677888988884
No 346
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.80 E-value=0.38 Score=50.48 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=31.2
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHH
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i 211 (545)
.+...+++|||+|.+..-. -..|.+.....|...++.+++|-+..+...|
T Consensus 115 ~~~~kViiIDead~m~~~a------anaLLk~LEep~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA------ANALLKAVEEPPPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred cCCcEEEEEechhhcCHHH------HHHHHHHhhcCCCCCeEEEEECChHHChHHH
Confidence 3557899999999986521 1334445555555666777777655554443
No 347
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.78 E-value=0.83 Score=49.65 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=15.9
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
+.+++.+|+|+|||+....
T Consensus 89 ~giLL~GppGtGKT~la~a 107 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKA 107 (495)
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 5799999999999986543
No 348
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.76 E-value=1 Score=51.47 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=20.8
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCCCeEEEEc
Q 009048 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~ 85 (545)
+.+++.+|+|+|||+..-.-+-..+...+.+.
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~~~fi~v~ 519 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVR 519 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 56899999999999865544433333334333
No 349
>PRK08006 replicative DNA helicase; Provisional
Probab=92.75 E-value=1.3 Score=47.74 Aligned_cols=145 Identities=16% Similarity=0.128 Sum_probs=65.4
Q ss_pred CCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEEcC---hHHHHHHHHHHHHHcCCceeEec-ccccHHHHHHHHHhhh
Q 009048 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSP---LIALMENQVIGLKEKGIAGEFLS-STQTMQVKTKIYEDLD 125 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp---~l~~~~~~lVi~P---~~aL~~qq~~~l~~~gi~~~~~~-~~~~~~~~~~~~~~~~ 125 (545)
.=+++.|.||.|||...+ +. +...+..+++++. ...|+....... .++....+. +..+......+.....
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~e~~~~~~a~~ 302 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASL--SRVDQTRIRTGQLDDEDWARISGTMG 302 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 345677899999996433 21 2234566778773 444443333222 223322222 2233333333322221
Q ss_pred cCCCCccEEEE-CcccccChhhHHHHHhhhcc-CCccEEEEeccccccccCC-CCHH-HHHHH----HHHHHhCCCcCEE
Q 009048 126 SGKPSLRLLYV-TPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRP-SYRKL----SSLRNYLPDVPIL 197 (545)
Q Consensus 126 ~~~~~~~il~~-tpe~~~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~-~fr~-~~~~l----~~l~~~~~~~~~l 197 (545)
.-.....+.+. +|. +............... +.+++||||=.|.+..-+. +-|. .+..+ ..+... -++|++
T Consensus 303 ~~~~~~~l~I~d~~~-~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke-l~ipVi 380 (471)
T PRK08006 303 ILLEKRNMYIDDSSG-LTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKE-LQVPVV 380 (471)
T ss_pred HHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHH-hCCeEE
Confidence 11001222222 221 2222233333333322 3589999999998864321 2222 22222 222222 278888
Q ss_pred EEEcC
Q 009048 198 ALTAT 202 (545)
Q Consensus 198 ~lTAT 202 (545)
++|-.
T Consensus 381 ~LsQL 385 (471)
T PRK08006 381 ALSQL 385 (471)
T ss_pred EEEec
Confidence 88843
No 350
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.75 E-value=0.68 Score=42.14 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=33.3
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHH
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~ 212 (545)
+..+++||||||.+.. .....|.+.....|..-++.|+++-...+...|.
T Consensus 101 ~~~KviiI~~ad~l~~------~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE------EAQNALLKTLEEPPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp SSSEEEEEETGGGS-H------HHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHH
T ss_pred CCceEEEeehHhhhhH------HHHHHHHHHhcCCCCCEEEEEEECChHHChHHHH
Confidence 4578999999999865 2335666777777766677777776666655443
No 351
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.74 E-value=0.46 Score=51.51 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.7
Q ss_pred EEEEcCCCchHHHHHH
Q 009048 56 CFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~ 71 (545)
.++.+|+|+|||.+..
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4999999999997654
No 352
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.65 E-value=0.25 Score=48.46 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=27.2
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcC----CCEEEEcCCCchHHHHHHHHH
Q 009048 28 KLLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~il~g----~d~lv~apTGsGKTl~~~lp~ 74 (545)
+.|.++.|-.+.+.-=.-.|++.... .++++.+|+|.|||..+.+-+
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHH
Confidence 34555555444433222234444322 368999999999997655543
No 353
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.65 E-value=0.76 Score=50.60 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHh----cCCCeEEEEcChHHHHHHHHHH
Q 009048 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIG 97 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~lp~l----~~~~~~lVi~P~~aL~~qq~~~ 97 (545)
..+|+|.+.++++... +.+.+..++-+|||.+.+.-+. ..+..++++.||..++.+.+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~ 81 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKE 81 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHH
Confidence 4689999999998765 5788899999999985443222 3478899999999999887743
No 354
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.62 E-value=0.3 Score=54.50 Aligned_cols=140 Identities=19% Similarity=0.133 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHHHHHHh------c------CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHh
Q 009048 56 CFCLMPTGGGKSMCYQIPAL------A------KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED 123 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~l------~------~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~ 123 (545)
.|+.-.-|-|||..-+.-.+ . ..+.+|+|+|+ +++.||..++ ..--+...+....... +......
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~el-ek~~~~~~l~v~v~~g-r~kd~~e 231 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTEL-EKVTEEDKLSIYVYHG-RTKDKSE 231 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHH-hccCCccceEEEEecc-cccccch
Q ss_pred hhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCC
Q 009048 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (545)
Q Consensus 124 ~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~ 203 (545)
+.. ++++++|+.++.++.+.... +-.+|+||||.+..+. .......-.+.....-.||+|+
T Consensus 232 l~~----~dVVltTy~il~~~~l~~i~--------w~Riildea~~ikn~~-------tq~~~a~~~L~a~~RWcLtgtP 292 (674)
T KOG1001|consen 232 LNS----YDVVLTTYDILKNSPLVKIK--------WLRIVLDEAHTIKNKD-------TQIFKAVCQLDAKYRWCLTGTP 292 (674)
T ss_pred hcC----CceEEeeHHHhhccccccee--------EEEEEeccccccCCcc-------hHhhhhheeeccceeeeecCCh
Q ss_pred ChhhHHHHHHHhcC
Q 009048 204 APKVQKDVMESLCL 217 (545)
Q Consensus 204 ~~~~~~~i~~~l~~ 217 (545)
......++...+..
T Consensus 293 iqn~~~~lysl~~f 306 (674)
T KOG1001|consen 293 IQNNLDELYSLFKF 306 (674)
T ss_pred hhhhHHHHHHHHHH
No 355
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.61 E-value=0.88 Score=45.91 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
..+++.+|+|+|||....
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999996543
No 356
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.58 E-value=0.31 Score=49.53 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHH--HHHHh---cCCCeEEEEcChHHH
Q 009048 39 FRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY--QIPAL---AKPGIVLVVSPLIAL 90 (545)
Q Consensus 39 ~r~~Q~~~i~~il-~g~d~lv~apTGsGKTl~~--~lp~l---~~~~~~lVi~P~~aL 90 (545)
+.+.|.+.+..+. .++++++.++||||||... ++..+ ....+++++=...+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 6788888876665 4568999999999999532 22333 123456666666665
No 357
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.57 E-value=2.2 Score=48.32 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=33.0
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCcCEEEEEcCCChhhHHHHHHHhc
Q 009048 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLC 216 (545)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lTAT~~~~~~~~i~~~l~ 216 (545)
.++|+||=+-+... -......+..+... .|...++.++||.......++...+.
T Consensus 264 ~D~VLIDTAGRs~~----d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~ 318 (767)
T PRK14723 264 KHLVLIDTVGMSQR----DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYR 318 (767)
T ss_pred CCEEEEeCCCCCcc----CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHh
Confidence 57888888765432 22333444444332 24556788899988777777766553
No 358
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.56 E-value=0.52 Score=52.13 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=27.9
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhH
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~ 208 (545)
.+..+++||||+|.++.. ....|.+.....|..-++.|.+|-+..+.
T Consensus 117 ~~~~KVvIIdev~~Lt~~------a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN------AFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCceEEEEEChhhCCHH------HHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 345789999999998752 23455555555554434444445444333
No 359
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.56 E-value=0.39 Score=46.18 Aligned_cols=130 Identities=25% Similarity=0.236 Sum_probs=65.8
Q ss_pred CCCEEEEcCCCchHHHH-HH--HHHhcC-CCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCC
Q 009048 53 GRDCFCLMPTGGGKSMC-YQ--IPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~-~~--lp~l~~-~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (545)
|.-+++.+|+|+|||.. ++ ...+.. +..+++++- .+-..+..+.+.++|+.... ....+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~---------------~~~~g- 81 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFGWDLEE---------------YEDSG- 81 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTTS-HHH---------------HHHTT-
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcCCcHHH---------------HhhcC-
Confidence 46789999999999953 33 345556 777888873 22235566667766653210 11111
Q ss_pred CCccEEEECccccc----C-hhhHHHHHhhhccCCccEEEEeccccccccC--CCCHHHHHHHHHHHHhCCCcCEEEEEc
Q 009048 129 PSLRLLYVTPELTA----T-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWG--HDFRPSYRKLSSLRNYLPDVPILALTA 201 (545)
Q Consensus 129 ~~~~il~~tpe~~~----t-~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g--~~fr~~~~~l~~l~~~~~~~~~l~lTA 201 (545)
.+.++-..++... . ..+...+.........+++|||-..-+.... ..+|..+..+....+.. ++ ..++|+
T Consensus 82 -~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~-~~-t~llt~ 158 (226)
T PF06745_consen 82 -KLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSR-GV-TTLLTS 158 (226)
T ss_dssp -SEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHT-TE-EEEEEE
T ss_pred -CEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHC-CC-EEEEEE
Confidence 1334444444331 1 2234444433333335899999888872222 22444444444444443 22 334444
Q ss_pred C
Q 009048 202 T 202 (545)
Q Consensus 202 T 202 (545)
.
T Consensus 159 ~ 159 (226)
T PF06745_consen 159 E 159 (226)
T ss_dssp E
T ss_pred c
Confidence 4
No 360
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.52 E-value=2.3 Score=43.98 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=27.0
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCCh
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~ 205 (545)
.+...++||||||.+.. ..-..|.+.....|...++.|.++.+.
T Consensus 139 ~g~~rVviIDeAd~l~~------~aanaLLk~LEEpp~~~~fiLit~~~~ 182 (351)
T PRK09112 139 DGNWRIVIIDPADDMNR------NAANAILKTLEEPPARALFILISHSSG 182 (351)
T ss_pred cCCceEEEEEchhhcCH------HHHHHHHHHHhcCCCCceEEEEECChh
Confidence 45678999999999864 222445555555555445555555443
No 361
>PRK05636 replicative DNA helicase; Provisional
Probab=92.51 E-value=0.56 Score=50.89 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=69.1
Q ss_pred HHHHHHcC---CC-EEEEcCCCchHHHHHH-HH---HhcCCCeEEEEc---ChHHHHHHHHHHHHHcCCceeEe-ccccc
Q 009048 46 AIQAVLSG---RD-CFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFL-SSTQT 113 (545)
Q Consensus 46 ~i~~il~g---~d-~lv~apTGsGKTl~~~-lp---~l~~~~~~lVi~---P~~aL~~qq~~~l~~~gi~~~~~-~~~~~ 113 (545)
.++.+..| .+ +++.|.||.|||...+ +. ++..+..+++++ |...|+...+... .+++...+ .+..+
T Consensus 254 ~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~--s~v~~~~i~~g~l~ 331 (505)
T PRK05636 254 DLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAE--AEVRLSDMRGGKMD 331 (505)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHh--cCCCHHHHhcCCCC
Confidence 34444443 34 5778899999995433 22 223355677775 4445544333222 12222211 12223
Q ss_pred HHHHHHHHHhhhcCCCCccEEEE-CcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCHHH-HH----HHHH
Q 009048 114 MQVKTKIYEDLDSGKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPS-YR----KLSS 186 (545)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~il~~-tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~~-~~----~l~~ 186 (545)
......+...+..-. +..+.+- +|. +.-...............+++||||=.|.+..-.. +-|.. +. .|..
T Consensus 332 ~~e~~~~~~a~~~l~-~~~l~I~d~~~-~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~ 409 (505)
T PRK05636 332 EDAWEKLVQRLGKIA-QAPIFIDDSAN-LTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKL 409 (505)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 333333332222111 1223322 221 11122333344444445689999999999864221 12221 21 2222
Q ss_pred HHHhCCCcCEEEEEc
Q 009048 187 LRNYLPDVPILALTA 201 (545)
Q Consensus 187 l~~~~~~~~~l~lTA 201 (545)
+...+ ++|++++|-
T Consensus 410 lAkel-~ipVi~lsQ 423 (505)
T PRK05636 410 LAKEL-DVPLIAISQ 423 (505)
T ss_pred HHHHh-CCeEEEEee
Confidence 22222 788888873
No 362
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.50 E-value=1.8 Score=43.70 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.5
Q ss_pred CEEEEcCCCchHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (545)
.+++.||+|+|||.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999997653
No 363
>CHL00181 cbbX CbbX; Provisional
Probab=92.45 E-value=1.3 Score=44.52 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (545)
|.++++.+|+|+|||.++..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34589999999999987643
No 364
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=92.41 E-value=0.14 Score=57.23 Aligned_cols=57 Identities=25% Similarity=0.245 Sum_probs=46.1
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEEcChHHHHHHHHHHHHHcCCceeEecc
Q 009048 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~ 110 (545)
.++++.||||||||..+.+|.+.. .+.+||+=|--++........++.|-.+..++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~FnP 197 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFAP 197 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEecC
Confidence 489999999999999999998765 678888889999987766666667766665543
No 365
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.40 E-value=0.31 Score=47.95 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=42.5
Q ss_pred cCCCCCCHHHHHHHHHHH-------cCCCEEEEcCCCchHHHHHHH--HHhcCCCeEEEEcChHHHHHHHHHHH
Q 009048 34 FGHAQFRDKQLDAIQAVL-------SGRDCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMENQVIGL 98 (545)
Q Consensus 34 fg~~~~r~~Q~~~i~~il-------~g~d~lv~apTGsGKTl~~~l--p~l~~~~~~lVi~P~~aL~~qq~~~l 98 (545)
|.|.-....+..++..+. .++++++.||+|+|||..+.. -.+.+.+..+.++++-+|+.+....+
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH
Confidence 334434445555554443 567999999999999964332 22336678888889999887644433
No 366
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.34 E-value=0.14 Score=59.26 Aligned_cols=148 Identities=15% Similarity=0.130 Sum_probs=86.7
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhc---------------------CCCeEEEEcChHHHHHHHHHHHHHc---CCceeEe
Q 009048 53 GRDCFCLMPTGGGKSMCYQIPALA---------------------KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFL 108 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~l~---------------------~~~~~lVi~P~~aL~~qq~~~l~~~---gi~~~~~ 108 (545)
|++++..-..|.|||.+-+.-.+. ..|.||||+|.--| .||...+... ++++...
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl-~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAIL-MQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHH-HHHHHHHHHhccccceEEEE
Confidence 466777778999999875533221 14779999998655 5888887662 3333222
Q ss_pred cccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHH---------HHHhhhcc--C-----CccEEEEeccccccc
Q 009048 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS---------KLKKIHSR--G-----LLNLVAIDEAHCISS 172 (545)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~---------~l~~~~~~--~-----~l~~iViDEaH~i~~ 172 (545)
.+-. ...... ...-.+++|+++|..++.+.-... +..+.+-. . .+-.|++|||+.+-.
T Consensus 453 ~Gir-k~~~~~-----~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves 526 (1394)
T KOG0298|consen 453 FGIR-KTFWLS-----PFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES 526 (1394)
T ss_pred echh-hhcccC-----chhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc
Confidence 1111 000000 011124899999988776532111 11111100 0 033589999998754
Q ss_pred cCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHh
Q 009048 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (545)
Q Consensus 173 ~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l 215 (545)
-. ....+....+|.+-.-++|+|+-.. ..++.-.|
T Consensus 527 ss-------S~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll 561 (1394)
T KOG0298|consen 527 SS-------SAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLL 561 (1394)
T ss_pred hH-------HHHHHHHHHhhhhceeeecCCchhh-hhhhHHHH
Confidence 11 4556667777888899999998777 55554444
No 367
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=92.30 E-value=0.17 Score=46.74 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=49.2
Q ss_pred EEEcCCCchHHHHHHHHHh--cCC--CeEEEEcChHHHHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCC
Q 009048 57 FCLMPTGGGKSMCYQIPAL--AKP--GIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (545)
Q Consensus 57 lv~apTGsGKTl~~~lp~l--~~~--~~~lVi~P~~aL~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (545)
++.|+-|-|||.+.-+.+- ... ..++|.+|..+=++...+.+.. ++.+. ...........+. .
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~-------~~~~~~~~~~~~~--~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKE-------EKKKRIGQIIKLR--F 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccccccc-------ccccccccccccc--c
Confidence 4789999999976544332 222 3688889988765544433221 22111 0000000000001 1
Q ss_pred CCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCCh
Q 009048 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (545)
Q Consensus 129 ~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~ 205 (545)
....+.|..|+.+.... ...+++|||||=.+.- ..|..+ ....+.++||.|...
T Consensus 72 ~~~~i~f~~Pd~l~~~~-----------~~~DlliVDEAAaIp~---------p~L~~l---l~~~~~vv~stTi~G 125 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAEK-----------PQADLLIVDEAAAIPL---------PLLKQL---LRRFPRVVFSTTIHG 125 (177)
T ss_dssp -CCC--B--HHHHCCT---------------SCEEECTGGGS-H---------HHHHHH---HCCSSEEEEEEEBSS
T ss_pred ccceEEEECCHHHHhCc-----------CCCCEEEEechhcCCH---------HHHHHH---HhhCCEEEEEeeccc
Confidence 13456666665443311 1258999999988653 233333 345667888888753
No 368
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.29 E-value=0.91 Score=50.37 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcC
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT 202 (545)
+...+|||||+|.+.. .....|.+.....|...++.+.+|
T Consensus 119 ~~~kVvIIDEa~~L~~------~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 119 ARYKVYIIDEVHMLST------AAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred CCeEEEEEeChHhCCH------HHHHHHHHHHhcCCCCeEEEEEeC
Confidence 4468999999999864 122344444444444445555554
No 369
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.19 E-value=0.79 Score=52.39 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
++.+++.+|+|+|||....
T Consensus 212 ~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CceEEEECCCCCChHHHHH
Confidence 4679999999999997544
No 370
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.19 E-value=1.1 Score=53.43 Aligned_cols=76 Identities=9% Similarity=0.096 Sum_probs=63.5
Q ss_pred CCccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc-cccccccCCCcEEE
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GiD~p~v~~VI 331 (545)
.+.+++|.++|+.-+.+++..+.+. ++.+..++++.+..++..+++...+|.++|||+|.. +...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3567999999999999999888753 467888999999999999999999999999999974 34456677888877
Q ss_pred E
Q 009048 332 H 332 (545)
Q Consensus 332 ~ 332 (545)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 371
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.13 E-value=3.3 Score=44.55 Aligned_cols=56 Identities=20% Similarity=0.132 Sum_probs=30.5
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcC
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL 217 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~ 217 (545)
..++++||.+-+... -......+..+.... |.-.++.|+||.......++...+..
T Consensus 334 d~d~VLIDTaGr~~~----d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~ 390 (484)
T PRK06995 334 NKHIVLIDTIGMSQR----DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRG 390 (484)
T ss_pred CCCeEEeCCCCcChh----hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhcc
Confidence 357889999643211 111111222222211 33467999999988877776666543
No 372
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.13 E-value=0.93 Score=45.42 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
.++++.+|+|+|||.++
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47999999999999766
No 373
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.00 E-value=5.2 Score=42.43 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=31.4
Q ss_pred CEEEEcCCCchHHHHHH-HHHh-c--CCCeEEEEc--ChHHHHHHHHHHHH-HcCCcee
Q 009048 55 DCFCLMPTGGGKSMCYQ-IPAL-A--KPGIVLVVS--PLIALMENQVIGLK-EKGIAGE 106 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~l-~--~~~~~lVi~--P~~aL~~qq~~~l~-~~gi~~~ 106 (545)
-+++++++|+|||.+.. +... . .+.++++|. +.+.-+.+|...+. ..|++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~ 159 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF 159 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceE
Confidence 36789999999996543 3322 2 345566555 55655666666543 3555543
No 374
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=91.98 E-value=0.13 Score=61.55 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=77.4
Q ss_pred ccEEEEecchhhHHHHHHHHHhCC-CcEEEecCCCC-----------HHHHHHHHHHHHcCCCcEEEeccccccccccCC
Q 009048 259 TCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLN-----------DKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (545)
Q Consensus 259 ~~~IIf~~t~~~~~~l~~~L~~~g-~~~~~~h~~l~-----------~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~ 326 (545)
-++|+|++.+..+..+.+.++..+ ..+..+.|.+. ...+.+++..|....+.+|++|.++..|+|.+.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 468999999999988888887642 22233444332 123578889999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHhhccCCC
Q 009048 327 VRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (545)
Q Consensus 327 v~~VI~~~~p~s~~~y~Qr~GRagR~g 353 (545)
+..|++++.|.....|+|..||+-+..
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997654
No 375
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.97 E-value=1.2 Score=41.48 Aligned_cols=119 Identities=18% Similarity=0.125 Sum_probs=48.2
Q ss_pred cCCCEEEEcCCCchHHHHHH-H-HHhc-----------CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ-I-PALA-----------KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~-l-p~l~-----------~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~ 118 (545)
.|.-+++.||+|+|||...+ + ..+. .+..++++..-.. ..+..+++....... ......
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~-------~~~~~~ 102 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY-------DDDANL 102 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS--------HHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc-------CCccce
Confidence 45568899999999995432 2 2222 3457888875444 234445555432111 111111
Q ss_pred HHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhcc-CCccEEEEeccccccccCCCCHHH
Q 009048 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPS 180 (545)
Q Consensus 119 ~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~~fr~~ 180 (545)
.... .... ...+++............+..+...... ..+++||||=...+..-+.+....
T Consensus 103 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~ 163 (193)
T PF13481_consen 103 FFVD-LSNW-GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSA 163 (193)
T ss_dssp HHHH-H--E--EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHH
T ss_pred EEee-cccc-ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHH
Confidence 1211 1110 0111111110011123344445444444 568999999998887654444443
No 376
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.94 E-value=0.34 Score=43.44 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=24.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHH
Q 009048 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~q 93 (545)
.++.+|.|+|||..|........+ .++++.+-+++.+
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~ 41 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQ 41 (187)
T ss_pred EEEecCCCCCceeeeeccchhhcC-CeEEECHHHHhhh
Confidence 367899999999877543222222 5667777777654
No 377
>PRK10867 signal recognition particle protein; Provisional
Probab=91.87 E-value=4.7 Score=42.86 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=30.7
Q ss_pred EEEEcCCCchHHHHHH-HHH-h-cC-CCeEEEEc--ChHHHHHHHHHHHH-HcCCcee
Q 009048 56 CFCLMPTGGGKSMCYQ-IPA-L-AK-PGIVLVVS--PLIALMENQVIGLK-EKGIAGE 106 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~-lp~-l-~~-~~~~lVi~--P~~aL~~qq~~~l~-~~gi~~~ 106 (545)
+++++|+|+|||.+.. +.. + .. +..+++|. +.+.-+.+|...+. ..|++..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 6788999999996543 322 2 23 44565555 56666666665543 3555543
No 378
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=0.17 Score=50.42 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.5
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
.++++++|||||||+.++-
T Consensus 98 SNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred ccEEEECCCCCcHHHHHHH
Confidence 4789999999999997764
No 379
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.85 E-value=3 Score=46.10 Aligned_cols=76 Identities=18% Similarity=0.178 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHh---cCCCeEEEEcChHHHHHHHHH
Q 009048 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPAL---AKPGIVLVVSPLIALMENQVI 96 (545)
Q Consensus 22 ~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~--~lp~l---~~~~~~lVi~P~~aL~~qq~~ 96 (545)
..+.+...|+.+|++..+.. ++-...+.+-.++..|--.|||.+. ++..+ ..+-.++++.|.+..++...+
T Consensus 227 ~a~r~~~~lk~~Fdi~~~s~----~~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~ 302 (738)
T PHA03368 227 HAERVERFLRTVFNTPLFSD----AAVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFE 302 (738)
T ss_pred HHHHHHHHHHHHcCCccccH----HHHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHH
Confidence 34667788999999887653 2223346677888899999999643 23322 257789999999999988888
Q ss_pred HHHHc
Q 009048 97 GLKEK 101 (545)
Q Consensus 97 ~l~~~ 101 (545)
++...
T Consensus 303 eI~~~ 307 (738)
T PHA03368 303 EIGAR 307 (738)
T ss_pred HHHHH
Confidence 87763
No 380
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.84 E-value=0.57 Score=52.64 Aligned_cols=84 Identities=23% Similarity=0.213 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccc
Q 009048 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (545)
Q Consensus 245 ~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD 323 (545)
.++.+.+.+.. ++.+||.++.+....++.+.|..+ |.++..+|+++++.+|.....+..+|+.+|+|.|-.+- -.=
T Consensus 234 Yl~~i~~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F~P 310 (730)
T COG1198 234 YLEAIAKVLAQ--GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-FLP 310 (730)
T ss_pred HHHHHHHHHHc--CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-cCc
Confidence 34444455543 467999999999999999999876 88999999999999999999999999999999986422 122
Q ss_pred cCCCcEEE
Q 009048 324 RKDVRLVC 331 (545)
Q Consensus 324 ~p~v~~VI 331 (545)
+++...||
T Consensus 311 f~~LGLII 318 (730)
T COG1198 311 FKNLGLII 318 (730)
T ss_pred hhhccEEE
Confidence 34566666
No 381
>PRK04328 hypothetical protein; Provisional
Probab=91.83 E-value=0.13 Score=50.51 Aligned_cols=50 Identities=18% Similarity=0.068 Sum_probs=31.8
Q ss_pred CCCEEEEcCCCchHHH-HHHH--HHhcCCCeEEEEcChHHHHHHHHHHHHHcCC
Q 009048 53 GRDCFCLMPTGGGKSM-CYQI--PALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (545)
Q Consensus 53 g~d~lv~apTGsGKTl-~~~l--p~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi 103 (545)
|.-+++.+|+|+|||. +.++ -.+..+..+++++ +-+-..+..+.+.++|.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 5678899999999985 4443 3345667777776 32233344555666654
No 382
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=91.74 E-value=0.19 Score=55.92 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=46.1
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEEcChHHHHHHHHHHHHHcCCceeEecc
Q 009048 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~ 110 (545)
.++++.||||+|||..+.+|.+.. ++.++|+=|--++..-.....++.|-++..+..
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP 282 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDP 282 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeC
Confidence 578999999999999999999865 677888889999877666666667766666654
No 383
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.74 E-value=1.2 Score=50.71 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=19.3
Q ss_pred HHHHHHHc--CCCEEEEcCCCchHHHHHH
Q 009048 45 DAIQAVLS--GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 45 ~~i~~il~--g~d~lv~apTGsGKTl~~~ 71 (545)
+++..+.. ..++++.+|+|+|||....
T Consensus 197 ~~i~iL~r~~~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 34444433 3589999999999998654
No 384
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.71 E-value=0.53 Score=48.29 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=34.4
Q ss_pred hccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHH
Q 009048 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (545)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~ 212 (545)
...+..+++|||+||.|..-. -..|.+....-|..-++.|.+.-+..+...|.
T Consensus 104 ~~~g~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 104 ARLGGAKVVWLPDAALLTDAA------ANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred cccCCceEEEEcchHhhCHHH------HHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 345668899999999987522 24455555555555567777776666555444
No 385
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=91.69 E-value=0.34 Score=54.73 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HH-Hhc----CCCeEEEEcChHHHHHHHHHHHHH
Q 009048 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IP-ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 39 ~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~--lp-~l~----~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
|++.|.+++.. ...+++|.|+.|||||.+.. +. .+. .+..+++|+.|+..+.+.-+++.+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 78999999876 35689999999999996533 21 121 245689999999998888777765
No 386
>PHA00350 putative assembly protein
Probab=91.68 E-value=0.82 Score=47.73 Aligned_cols=24 Identities=29% Similarity=0.149 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHH----HHHhcCCC
Q 009048 56 CFCLMPTGGGKSMCYQ----IPALAKPG 79 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~----lp~l~~~~ 79 (545)
.++.+..|||||+... +|++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR 31 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR 31 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC
Confidence 4788999999997543 56666664
No 387
>PRK09354 recA recombinase A; Provisional
Probab=91.65 E-value=1 Score=46.31 Aligned_cols=96 Identities=20% Similarity=0.222 Sum_probs=55.1
Q ss_pred HHHHHHc-C-----CCEEEEcCCCchHHHHHHH---HHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHH
Q 009048 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (545)
Q Consensus 46 ~i~~il~-g-----~d~lv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~ 116 (545)
.++.++. | +-+.+.+|+|+|||...+- .+...++.+++|..--++-. ..++.+|+..
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~---~~a~~lGvdl----------- 112 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP---VYAKKLGVDI----------- 112 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH---HHHHHcCCCH-----------
Confidence 4666776 3 4678999999999964332 22345778888887666643 2344555431
Q ss_pred HHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009048 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (545)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (545)
-++++..|... ...+..+..+...+.+++||||=+-.+.
T Consensus 113 --------------d~lli~qp~~~--Eq~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 113 --------------DNLLVSQPDTG--EQALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred --------------HHeEEecCCCH--HHHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 12333334321 1122223334444568999999766543
No 388
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.59 E-value=1.4 Score=46.25 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=16.3
Q ss_pred CCEEEEcCCCchHHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQIP 73 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp 73 (545)
+.+++.||+|+|||+....-
T Consensus 166 ~gvLL~GppGtGKT~lAkai 185 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAV 185 (389)
T ss_pred CceEEECCCCCChHHHHHHH
Confidence 56999999999999865443
No 389
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.55 E-value=1.2 Score=50.99 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
.++++.+|+|+|||....
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 589999999999997643
No 390
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.55 E-value=0.96 Score=48.24 Aligned_cols=145 Identities=18% Similarity=0.156 Sum_probs=64.8
Q ss_pred CCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEEc---ChHHHHHHHHHHHHHcCCceeEec-ccccHHHHHHHHHhhh
Q 009048 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQTMQVKTKIYEDLD 125 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp---~l~~~~~~lVi~---P~~aL~~qq~~~l~~~gi~~~~~~-~~~~~~~~~~~~~~~~ 125 (545)
.=+++.|+||+|||...+ +. +...+..+++++ |...++....... .+++...+. +.........+.....
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~--~~v~~~~~~~g~l~~~~~~~~~~a~~ 273 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSE--SRVDSQKLRTGKLSDEDWEKLTSAAG 273 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHh--cCCCHHHhccCCCCHHHHHHHHHHHH
Confidence 446788999999995433 22 112355677777 3444443322221 233321111 1122222222221111
Q ss_pred cCCCCccEEE-ECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCH-HHHHH----HHHHHHhCCCcCEEE
Q 009048 126 SGKPSLRLLY-VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFR-PSYRK----LSSLRNYLPDVPILA 198 (545)
Q Consensus 126 ~~~~~~~il~-~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr-~~~~~----l~~l~~~~~~~~~l~ 198 (545)
.-. ...+.+ .+|. +.-......+........+++||||=.+.+..-+. +-| ..+.. |..+... -++|+++
T Consensus 274 ~l~-~~~l~i~d~~~-~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e-~~i~vi~ 350 (434)
T TIGR00665 274 KLS-EAPLYIDDTPG-LTITELRAKARRLKREHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKE-LNVPVIA 350 (434)
T ss_pred HHh-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHH-hCCeEEE
Confidence 111 122222 2332 11122333444444444589999999888753221 112 12222 2222222 2788888
Q ss_pred EEcCC
Q 009048 199 LTATA 203 (545)
Q Consensus 199 lTAT~ 203 (545)
+|-..
T Consensus 351 lsqln 355 (434)
T TIGR00665 351 LSQLS 355 (434)
T ss_pred EeccC
Confidence 87553
No 391
>PRK08506 replicative DNA helicase; Provisional
Probab=91.48 E-value=0.87 Score=49.09 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=69.3
Q ss_pred HHHHHHHHcC----CCEEEEcCCCchHHHHHHHH---HhcCCCeEEEEcChHHHHHHHHHHHHH--cCCceeEec-cccc
Q 009048 44 LDAIQAVLSG----RDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQT 113 (545)
Q Consensus 44 ~~~i~~il~g----~d~lv~apTGsGKTl~~~lp---~l~~~~~~lVi~P~~aL~~qq~~~l~~--~gi~~~~~~-~~~~ 113 (545)
...++.+..| .=+++.|.||.|||...+-- +...+..+++++.=- =..+.+.++-. .+++...+. +..+
T Consensus 179 ~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEM-s~~ql~~Rlla~~s~v~~~~i~~~~l~ 257 (472)
T PRK08506 179 FVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEM-PAEQLMLRMLSAKTSIPLQNLRTGDLD 257 (472)
T ss_pred hHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcC-CHHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 3444555443 34677889999999644321 223455677776321 11233333322 233322221 2222
Q ss_pred HHHHHHHHHhhhcCCCCccEEEE-CcccccChhhHHHHHhhhcc-CCccEEEEeccccccccCCCCHHHHHHHHH-----
Q 009048 114 MQVKTKIYEDLDSGKPSLRLLYV-TPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSS----- 186 (545)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~il~~-tpe~~~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~~fr~~~~~l~~----- 186 (545)
......+......-. +..+.+. +| -+........+...... +.+++||||=.+.+..-+. +......+..
T Consensus 258 ~~e~~~~~~a~~~l~-~~~l~I~d~~-~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~-~~~r~~ev~~isr~L 334 (472)
T PRK08506 258 DDEWERLSDACDELS-KKKLFVYDSG-YVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGN-FKDRHLQISEISRGL 334 (472)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEECCC-CCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCC-CCCHHHHHHHHHHHH
Confidence 223222222211111 1223222 22 12222233333333332 3589999999998864332 2222222222
Q ss_pred --HHHhCCCcCEEEEEcC
Q 009048 187 --LRNYLPDVPILALTAT 202 (545)
Q Consensus 187 --l~~~~~~~~~l~lTAT 202 (545)
+... -++|++++|-.
T Consensus 335 K~lAke-l~ipVi~lsQL 351 (472)
T PRK08506 335 KLLARE-LDIPIIALSQL 351 (472)
T ss_pred HHHHHH-hCCcEEEEeec
Confidence 2222 27888888744
No 392
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=91.47 E-value=1.3 Score=47.21 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.5
Q ss_pred CCCEEEEcCCCchHHHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~ 74 (545)
.+.+++.+|+|+|||+....-+
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA 238 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVA 238 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999998765433
No 393
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.42 E-value=1.1 Score=43.79 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=17.1
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 009048 51 LSGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~ 70 (545)
..|+.+++.+|.|+|||...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 47889999999999999643
No 394
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.34 E-value=1.3 Score=48.77 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=63.5
Q ss_pred CCccEEEEecchhhHHH----HHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc-cccccccCCCcEEE
Q 009048 257 GDTCAIVYCLERTTCDE----LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~----l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GiD~p~v~~VI 331 (545)
.+.++...++|-=-|++ +.++|...|+.+..+.|.+..+.|.++++...+|+++++|.|-| +...|++.+.-+||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 35578889999655555 45555567999999999999999999999999999999999997 46789988888888
Q ss_pred E
Q 009048 332 H 332 (545)
Q Consensus 332 ~ 332 (545)
.
T Consensus 390 i 390 (677)
T COG1200 390 I 390 (677)
T ss_pred E
Confidence 4
No 395
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=91.33 E-value=1.4 Score=42.93 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=67.3
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHHcCC----CcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhcc-CCCCCC
Q 009048 282 GISCAAYHAGLNDKARSSVLDDWISSR----KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG-RDQLPS 356 (545)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~----~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRag-R~g~~~ 356 (545)
++.+..++++.+... -.|.++. ..|+|.-+.+++|+-+++........-|+..+++.|+.=..| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 456666665544322 3344443 789999999999999999999999999999999999988888 777788
Q ss_pred eEEEEeccccHHHHHHHHH
Q 009048 357 KSLLYYGMDDRRRMEFILS 375 (545)
Q Consensus 357 ~~i~~~~~~d~~~~~~i~~ 375 (545)
.|-+|.+++-...+..+..
T Consensus 185 l~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred ceEEecCHHHHHHHHHHHH
Confidence 8998887766666655543
No 396
>PRK06620 hypothetical protein; Validated
Probab=91.30 E-value=0.7 Score=44.19 Aligned_cols=18 Identities=17% Similarity=0.181 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+.+++.||+|+|||....
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999997544
No 397
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=91.29 E-value=0.26 Score=54.67 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=44.6
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEEcChHHHHHHHHHHHHHcC-CceeEecc
Q 009048 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKG-IAGEFLSS 110 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~aL~~qq~~~l~~~g-i~~~~~~~ 110 (545)
.++++.||||+|||..+.+|.+.. ++.++|+-|--++..-.....++.| -++..+..
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfdP 270 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLDP 270 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 589999999999999999999765 6789999999999766555555565 45555543
No 398
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=91.26 E-value=5 Score=44.62 Aligned_cols=144 Identities=13% Similarity=0.068 Sum_probs=72.6
Q ss_pred HHHcCCCEEEEcCCCchHHHHHHH--H-Hhc-CCCeEEEEcChHHHHHHHHHHHHHcCCcee--EecccccHHHHHHHHH
Q 009048 49 AVLSGRDCFCLMPTGGGKSMCYQI--P-ALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGE--FLSSTQTMQVKTKIYE 122 (545)
Q Consensus 49 ~il~g~d~lv~apTGsGKTl~~~l--p-~l~-~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~--~~~~~~~~~~~~~~~~ 122 (545)
...+.+-.++.+|-|-|||.+.-+ . .+. .+..++|..|...-+++....++..-.... .+..... . ..
T Consensus 183 ~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~-----~-iv 256 (752)
T PHA03333 183 DEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEF-----K-IV 256 (752)
T ss_pred HHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCc-----e-EE
Confidence 334567788899999999965332 1 122 456799999988777776666554210000 0000000 0 00
Q ss_pred hhhcCCCCccEEEECccccc----ChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEE
Q 009048 123 DLDSGKPSLRLLYVTPELTA----TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198 (545)
Q Consensus 123 ~~~~~~~~~~il~~tpe~~~----t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~ 198 (545)
... .....+.|..|.-.. +-.|...-.....-..++++|||||+.+.. +.+..+.-+... .+.|++.
T Consensus 257 ~vk--gg~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~------~~l~aIlP~l~~-~~~k~Ii 327 (752)
T PHA03333 257 TLK--GTDENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP------GALLSVLPLMAV-KGTKQIH 327 (752)
T ss_pred Eee--CCeeEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH------HHHHHHHHHHcc-CCCceEE
Confidence 011 011234444433221 000111111111112368999999998764 223333333333 3788899
Q ss_pred EEcCCChhh
Q 009048 199 LTATAAPKV 207 (545)
Q Consensus 199 lTAT~~~~~ 207 (545)
+|.+-+...
T Consensus 328 ISS~~~~~s 336 (752)
T PHA03333 328 ISSPVDADS 336 (752)
T ss_pred EeCCCCcch
Confidence 988875554
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.17 E-value=7.6 Score=35.37 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=26.3
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCcCEEEEEcCCChhhHH
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQK 209 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lTAT~~~~~~~ 209 (545)
...+++|+|....... -......+..+... .+...++.+.|+.......
T Consensus 81 ~~~d~viiDt~g~~~~----~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~ 130 (173)
T cd03115 81 ENFDVVIVDTAGRLQI----DENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVN 130 (173)
T ss_pred CCCCEEEEECcccchh----hHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHH
Confidence 3477899999876431 11223344444332 2555567777765444443
No 400
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.15 E-value=2.3 Score=39.50 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=24.2
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcC
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT 202 (545)
.+...+|||||+|.+..- ....|.......|...++.|+++
T Consensus 94 ~~~~kviiide~~~l~~~------~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA------AANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH------HHHHHHHHhcCCCCCeEEEEEEC
Confidence 355789999999998651 12334444444444445555544
No 401
>PRK11054 helD DNA helicase IV; Provisional
Probab=91.10 E-value=0.66 Score=52.25 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH---h----cCCCeEEEEcChHHHHHHHHHHHHH
Q 009048 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---L----AKPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~---l----~~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
..|++.|.+|+.. ...+++|.|..|||||.+..--+ + ..+..+++++.++..+....+++..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4699999999864 34578999999999997643221 1 2345899999999999988888876
No 402
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.10 E-value=0.82 Score=46.33 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=28.6
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
+...+++||||+.+.. ..-..+.+.....|..-.+.|++.-+..+
T Consensus 108 ~~~kviiidead~mt~------~A~nallk~lEep~~~~~~il~~n~~~~i 152 (325)
T COG0470 108 GGYKVVIIDEADKLTE------DAANALLKTLEEPPKNTRFILITNDPSKI 152 (325)
T ss_pred CCceEEEeCcHHHHhH------HHHHHHHHHhccCCCCeEEEEEcCChhhc
Confidence 4588999999999865 22344555555556555566666544443
No 403
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=91.02 E-value=0.37 Score=54.99 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHh-c----CCCeEEEEcChHHHHHHHHHHHHHc
Q 009048 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-A----KPGIVLVVSPLIALMENQVIGLKEK 101 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~--lp~l-~----~~~~~lVi~P~~aL~~qq~~~l~~~ 101 (545)
..|+|.|.+|+... ...++|.|..|||||.+.. +.-+ . .+..+|+++-|+..+.+..+++.++
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 46899999999863 5689999999999996533 2222 2 2356999999998888888887653
No 404
>PRK14701 reverse gyrase; Provisional
Probab=91.01 E-value=1.3 Score=54.66 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=54.2
Q ss_pred CCccEEEEecchhhHHHHHHHHHhC------CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (545)
.+.+++|.++|+.-+.+++..|... ++.+..+||+++..++..+++.+.+|+.+|||+|+.+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgr 188 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQF 188 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCch
Confidence 3457999999999999999988862 4677899999999999999999999999999999753
No 405
>PRK07004 replicative DNA helicase; Provisional
Probab=90.95 E-value=1.5 Score=47.04 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=66.6
Q ss_pred CCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEEc---ChHHHHHHHHHHHHHcCCceeEe-cccccHHHHHHHHHhhh
Q 009048 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLD 125 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp---~l~~~~~~lVi~---P~~aL~~qq~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~~~ 125 (545)
.=+++.|.||.|||...+ +. ++..+..+++++ |...|+...+... .+++...+ .+..+......+.....
T Consensus 214 ~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~--~~v~~~~i~~g~l~~~e~~~~~~a~~ 291 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSV--GRLDQHRMRTGRLTDEDWPKLTHAVQ 291 (460)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhh--cCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 446778899999996443 21 223456677777 4445544433221 12222212 12223333332222221
Q ss_pred cCCCCccEEEE-CcccccChhhHHHHHhhhc-cCCccEEEEeccccccccCC-CCHH-HHHHHHHHHHhC---CCcCEEE
Q 009048 126 SGKPSLRLLYV-TPELTATPGFMSKLKKIHS-RGLLNLVAIDEAHCISSWGH-DFRP-SYRKLSSLRNYL---PDVPILA 198 (545)
Q Consensus 126 ~~~~~~~il~~-tpe~~~t~~~~~~l~~~~~-~~~l~~iViDEaH~i~~~g~-~fr~-~~~~l~~l~~~~---~~~~~l~ 198 (545)
.-. +..+.+. +|. +..........+... .+.+++||||=.+.+..-+. .-|. .+..+.+-++.+ -++|+++
T Consensus 292 ~l~-~~~l~I~d~~~-~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~ 369 (460)
T PRK07004 292 KMS-EAQLFIDETGG-LNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIA 369 (460)
T ss_pred HHh-cCCEEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 111 1233332 332 222223333333333 24589999999999864331 1121 222222211111 2788888
Q ss_pred EEcC
Q 009048 199 LTAT 202 (545)
Q Consensus 199 lTAT 202 (545)
+|--
T Consensus 370 lsQL 373 (460)
T PRK07004 370 LSQL 373 (460)
T ss_pred Eecc
Confidence 8753
No 406
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.95 E-value=0.93 Score=46.38 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
..+++.+|+|+|||.....
T Consensus 52 ~~~ll~GppG~GKT~la~~ 70 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANI 70 (328)
T ss_pred CcEEEECCCCccHHHHHHH
Confidence 4789999999999976543
No 407
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.92 E-value=1.3 Score=45.22 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHc--C---CCEEEEcCCCchHHHHHH
Q 009048 39 FRDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 39 ~r~~Q~~~i~~il~--g---~d~lv~apTGsGKTl~~~ 71 (545)
++|||...+..+.. + +-.++.+|.|.|||..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 36888888888773 2 357899999999996544
No 408
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.87 E-value=0.74 Score=46.45 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHH--HHHHhcC---CCeEEEEcChHHH
Q 009048 39 FRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY--QIPALAK---PGIVLVVSPLIAL 90 (545)
Q Consensus 39 ~r~~Q~~~i~~il-~g~d~lv~apTGsGKTl~~--~lp~l~~---~~~~lVi~P~~aL 90 (545)
+.+.|.+.+..+. .++++++.+|||||||... ++..+.. ..+++++--..+|
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 6667777776655 4568999999999999642 2222222 4567777776666
No 409
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=90.83 E-value=0.48 Score=48.20 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHH--HHHh---cCCCeEEEEcChHHH
Q 009048 39 FRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQ--IPAL---AKPGIVLVVSPLIAL 90 (545)
Q Consensus 39 ~r~~Q~~~i~~il-~g~d~lv~apTGsGKTl~~~--lp~l---~~~~~~lVi~P~~aL 90 (545)
+.+.|.+.+..+. .++++++.++||||||.... +..+ ....++++|-.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 6678888887654 56799999999999995432 1111 223456666666655
No 410
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.67 E-value=0.58 Score=47.37 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=42.0
Q ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHH-HHHHHh-cCCCeEEEEcChHHH
Q 009048 34 FGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMC-YQIPAL-AKPGIVLVVSPLIAL 90 (545)
Q Consensus 34 fg~~~~r~~Q~~~i~~il~g~-d~lv~apTGsGKTl~-~~lp~l-~~~~~~lVi~P~~aL 90 (545)
..|..+.+.|...+..+..++ ++++.+.||||||.. ..+.+. ....++|.+=-+.+|
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaEL 212 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAEL 212 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhh
Confidence 345678999999998888776 999999999999953 222222 234578887777776
No 411
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.66 E-value=1.2 Score=45.37 Aligned_cols=55 Identities=22% Similarity=0.162 Sum_probs=35.2
Q ss_pred HHHHHHc-C-----CCEEEEcCCCchHHHHHHHHH---hcCCCeEEEEcChHHHHHHHHHHHHHcCC
Q 009048 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (545)
Q Consensus 46 ~i~~il~-g-----~d~lv~apTGsGKTl~~~lp~---l~~~~~~lVi~P~~aL~~qq~~~l~~~gi 103 (545)
.++.++. | +-+.+.+|+|+|||...+-.+ ...++.+++|.+--++-.+ .++.+|+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGv 105 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGV 105 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCC
Confidence 4666666 3 467899999999995443222 2456788888876665432 3444443
No 412
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=90.64 E-value=0.65 Score=56.10 Aligned_cols=61 Identities=23% Similarity=0.277 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHH---HHhcC---CCeEEEEcChHHHHHHHHHHHHH
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI---PALAK---PGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~l---p~l~~---~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
++++.|.++|.. .+++++|.|..|||||.+..- -.+.. ...++||+-|++.+.+.-.++.+
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 378999999984 688999999999999976532 22222 24599999999998776666544
No 413
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.58 E-value=2.5 Score=45.17 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=36.3
Q ss_pred HHHHHhhhccCCccEEEEeccccccccCCCCHHHHH--HHHHHHHh----CCCcCEEEEEcCCChhhHH
Q 009048 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR--KLSSLRNY----LPDVPILALTATAAPKVQK 209 (545)
Q Consensus 147 ~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~--~l~~l~~~----~~~~~~l~lTAT~~~~~~~ 209 (545)
.+.|.......-..+|.|||.|.+...-..--..|. .|..++.. -++-.+|.+-||--|+..+
T Consensus 385 VRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 385 VRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred HHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 344444444444678999999998652111111132 23333332 2577899999998777654
No 414
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.52 E-value=0.47 Score=46.93 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEE
Q 009048 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (545)
Q Consensus 44 ~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi 84 (545)
.+++..+..|.++++.+|+|+|||.+...-+-..+...+.+
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34455566789999999999999976654333334444444
No 415
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.51 E-value=1.4 Score=45.99 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=17.6
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (545)
.|+-+++++|+|+|||.....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~ 187 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQK 187 (415)
T ss_pred CCCEEEEECCCCCChhHHHHH
Confidence 678899999999999975443
No 416
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.50 E-value=2.1 Score=44.13 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
+..++.||+|+|||...
T Consensus 37 ~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA 53 (355)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35689999999999654
No 417
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.49 E-value=0.46 Score=45.73 Aligned_cols=37 Identities=30% Similarity=0.288 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHH
Q 009048 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~q 93 (545)
++|.|+.|+|||... ...+.....+.+..|+..++.+
T Consensus 1 ~vv~G~pGsGKSt~i-~~~~~~~~~~~~~~~~~~~~~~ 37 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI-KKLLKDRLVVTVISPTIELYTE 37 (234)
T ss_pred CEEEcCCCCCHHHHH-HHHHHhccccccccccceeccc
Confidence 478999999999742 2233222223334455555543
No 418
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=90.48 E-value=0.26 Score=55.10 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=43.6
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEEcChHHHHHHHHHHHHHcCCceeEec
Q 009048 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~ 109 (545)
.++++.||||||||..+.+|.+.. .+.+||+=|--++........++.| .+..++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G-~V~~Fd 200 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG-RVLLFD 200 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC-eEEEEe
Confidence 589999999999999999999865 6788888899999876666555566 444443
No 419
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.46 E-value=1.8 Score=40.37 Aligned_cols=136 Identities=18% Similarity=0.109 Sum_probs=70.2
Q ss_pred cCCCEEEEcCCCchHHHHHHH---HHhcCCCeEEEEcChHHH-HHHHHHHHHHc-CCceeEecccccH--HHHHHHHHhh
Q 009048 52 SGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIAL-MENQVIGLKEK-GIAGEFLSSTQTM--QVKTKIYEDL 124 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~~aL-~~qq~~~l~~~-gi~~~~~~~~~~~--~~~~~~~~~~ 124 (545)
....+.+..++|-|||.+.+- -++-.+.+++++--++-- -..-...+.+. ++.......+... ......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~---- 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERD---- 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHH----
Confidence 456889999999999987653 334456677776544422 01111222222 1221111110000 000000
Q ss_pred hcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCC
Q 009048 125 DSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (545)
Q Consensus 125 ~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~ 204 (545)
...-..-+.........+.+++||+||.=....+|. -+. ..+..++...|.---+.||+.-.
T Consensus 97 ---------------~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gl--i~~-eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 97 ---------------IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGY--LDV-EEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred ---------------HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCC--ccH-HHHHHHHHcCCCCCEEEEECCCC
Confidence 000011122233444456799999999999888883 222 34445556666665678888766
Q ss_pred hhhHH
Q 009048 205 PKVQK 209 (545)
Q Consensus 205 ~~~~~ 209 (545)
|...-
T Consensus 159 p~~Li 163 (191)
T PRK05986 159 PRELI 163 (191)
T ss_pred CHHHH
Confidence 65433
No 420
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.29 E-value=1.2 Score=48.72 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=55.1
Q ss_pred EEEEecchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc-----ccccc-cccCCCcE
Q 009048 261 AIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVRL 329 (545)
Q Consensus 261 ~IIf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~-----a~~~G-iD~p~v~~ 329 (545)
+||.++||+-|.++++.+... ++.+..++||++...+...++ .| .+|||||+ .+.+| +|+..+++
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999999888752 567899999999887764444 46 99999996 45566 78888998
Q ss_pred EEE
Q 009048 330 VCH 332 (545)
Q Consensus 330 VI~ 332 (545)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 884
No 421
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.22 E-value=3 Score=40.00 Aligned_cols=51 Identities=22% Similarity=0.134 Sum_probs=33.3
Q ss_pred CCCEEEEcCCCchHHH-HHHHH--HhcCCCeEEEEcChHHHHHHHHHHHHHcCCc
Q 009048 53 GRDCFCLMPTGGGKSM-CYQIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (545)
Q Consensus 53 g~d~lv~apTGsGKTl-~~~lp--~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~ 104 (545)
|.-+++.+++|+|||. +.++. .+..+..+++++.-.. ..+..+.+..+|..
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~-~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER-EERILGYAKSKGWD 69 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHcCCC
Confidence 4567899999999984 44443 3456667888775443 35556666666543
No 422
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=1.1 Score=46.27 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
+++++.+|+|+|||+..
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999865
No 423
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=2.5 Score=43.49 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
+-++..+|+|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 68999999999999854
No 424
>PRK06749 replicative DNA helicase; Provisional
Probab=90.05 E-value=2.6 Score=44.81 Aligned_cols=32 Identities=16% Similarity=-0.140 Sum_probs=20.1
Q ss_pred CEEEEcCCCchHHHHHHHH---HhcCCCeEEEEcC
Q 009048 55 DCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSP 86 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~lp---~l~~~~~~lVi~P 86 (545)
=+++.|.||.|||...+-- +...+..+++++.
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSl 222 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSL 222 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEe
Confidence 3567889999999644311 1223556777763
No 425
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.02 E-value=1.6 Score=43.72 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=13.7
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
+.+++++|||+|||...
T Consensus 195 ~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTL 211 (282)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778999999999643
No 426
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.00 E-value=1.4 Score=44.75 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=53.3
Q ss_pred HHHHHHc-C-----CCEEEEcCCCchHHHHHH-H--HHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHH
Q 009048 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (545)
Q Consensus 46 ~i~~il~-g-----~d~lv~apTGsGKTl~~~-l--p~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~ 116 (545)
.++.++. | .-+.+.+|+|+|||...+ + -+...++.+++|..--++-.. .++.+|+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~----------- 107 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDI----------- 107 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCH-----------
Confidence 4566664 3 467899999999996433 2 223456778888665554332 344444421
Q ss_pred HHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009048 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (545)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (545)
-++++..|... ...+..+..+...+.+++||||=+-.+.
T Consensus 108 --------------~~l~v~~p~~~--eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 108 --------------DNLLVSQPDTG--EQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred --------------HHeEEecCCCH--HHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 12333434321 1122223333444568999999877654
No 427
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.93 E-value=1.5 Score=44.94 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHcCCCE------EEEcCCCchHHHHHHHHHhcCCCeEEEEcCh-----HHHHHHHHHHHHHcCCceeE
Q 009048 39 FRDKQLDAIQAVLSGRDC------FCLMPTGGGKSMCYQIPALAKPGIVLVVSPL-----IALMENQVIGLKEKGIAGEF 107 (545)
Q Consensus 39 ~r~~Q~~~i~~il~g~d~------lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~-----~aL~~qq~~~l~~~gi~~~~ 107 (545)
.|..|...+..++..+++ ++.|.+|+|||..-.-..-..+...+++.+. +-|.+.......
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~-------- 81 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQ-------- 81 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhc--------
Confidence 578899999888876654 7889999999975321111123456666652 222222222221
Q ss_pred ecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh---hhccCCccEEEEeccccccccCCCCHHHHHHH
Q 009048 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (545)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~---~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l 184 (545)
..+..+...+. +-|-+ .++...+.+ ..+...--++|+|-|+.+-+.+...-+.+.++
T Consensus 82 ~~d~dg~~~~~------------------~~en~--~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L 141 (438)
T KOG2543|consen 82 LADKDGDKVEG------------------DAENF--SDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRL 141 (438)
T ss_pred cCCCchhhhhh------------------HHHHH--HHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHH
Confidence 01111100000 00011 112222222 22223356899999999988776555555566
Q ss_pred HHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEE
Q 009048 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (545)
Q Consensus 185 ~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~ 223 (545)
..+... +.-.+.++++..+... ...+|...+.++
T Consensus 142 ~el~~~--~~i~iils~~~~e~~y---~~n~g~~~i~~l 175 (438)
T KOG2543|consen 142 YELLNE--PTIVIILSAPSCEKQY---LINTGTLEIVVL 175 (438)
T ss_pred HHHhCC--CceEEEEeccccHHHh---hcccCCCCceEE
Confidence 555443 3446888999877653 233444444433
No 428
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.85 E-value=1.8 Score=39.79 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=35.8
Q ss_pred HhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhH
Q 009048 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (545)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~ 208 (545)
.+....+.+++||+||+=-...+|. -+. ..+..+.+..|..-=+.||+.-.|...
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gl--i~~-~~v~~lL~~rp~~~evVlTGR~~p~~l 144 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGY--LDV-EEVVEALQERPGHQHVIITGRGCPQDL 144 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCC--cCH-HHHHHHHHhCCCCCEEEEECCCCCHHH
Confidence 3333456799999999998888773 221 344455566666556777887666543
No 429
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.80 E-value=0.5 Score=48.59 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=27.5
Q ss_pred HHcCCCEEEEcCCCchHHHHH--HHHHhcCCCeEEEEcChHHHH
Q 009048 50 VLSGRDCFCLMPTGGGKSMCY--QIPALAKPGIVLVVSPLIALM 91 (545)
Q Consensus 50 il~g~d~lv~apTGsGKTl~~--~lp~l~~~~~~lVi~P~~aL~ 91 (545)
+..++++++.+|||||||... ++..+....+++.|=.+.+|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCcccc
Confidence 335789999999999999632 122222345667666776663
No 430
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=89.80 E-value=0.45 Score=52.61 Aligned_cols=74 Identities=23% Similarity=0.336 Sum_probs=56.4
Q ss_pred HHHHHcCCCcEEEeccccccccccCCCc--------EEEEeCCCCCHHHHHHHHhhccCCCC---CCeEEEEeccccHHH
Q 009048 301 LDDWISSRKQVVVATVAFGMGIDRKDVR--------LVCHFNIPKSMEAFYQESGRAGRDQL---PSKSLLYYGMDDRRR 369 (545)
Q Consensus 301 ~~~f~~g~~~VLVaT~a~~~GiD~p~v~--------~VI~~~~p~s~~~y~Qr~GRagR~g~---~~~~i~~~~~~d~~~ 369 (545)
-++|++|+..|-|-+.|++-||-+..-+ +=|-+.+|+|.+--+|..||+.|.++ |.+.+++-+..-.++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 4689999999999999999999876543 33457899999999999999999987 445555555444444
Q ss_pred HHHHH
Q 009048 370 MEFIL 374 (545)
Q Consensus 370 ~~~i~ 374 (545)
+..+.
T Consensus 930 FAS~V 934 (1300)
T KOG1513|consen 930 FASIV 934 (1300)
T ss_pred HHHHH
Confidence 44443
No 431
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.76 E-value=2.5 Score=49.12 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
.+.++++|+|.|||....
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 588999999999997543
No 432
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.71 E-value=2.7 Score=40.84 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=22.5
Q ss_pred HcCC-CEEEEcCCCchHHHHHH--HHHhcCCCeEEEEcC
Q 009048 51 LSGR-DCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSP 86 (545)
Q Consensus 51 l~g~-d~lv~apTGsGKTl~~~--lp~l~~~~~~lVi~P 86 (545)
..|+ -+.++++.|||||..-- +..+.....++|+.|
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~ 86 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID 86 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec
Confidence 3455 56789999999998765 222233445554443
No 433
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.69 E-value=1.7 Score=48.37 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=31.2
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHH
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~ 209 (545)
.+..+++||||||.++.. ....|.+.....|..-++.|++|-...+..
T Consensus 119 ~~~~KVvIIdea~~Ls~~------a~naLLK~LEepp~~tifIL~tt~~~kIl~ 166 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA------AFNAFLKTLEEPPSYAIFILATTEKHKILP 166 (614)
T ss_pred cCCcEEEEEECcccCCHH------HHHHHHHHHhCCCCCeEEEEEeCCchhchH
Confidence 345789999999998752 234555666666665666777764444433
No 434
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=89.62 E-value=2.7 Score=36.76 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.2
Q ss_pred EEEEcCCCchHHHHHH
Q 009048 56 CFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~ 71 (545)
++++||+|||||....
T Consensus 2 ii~~G~pgsGKSt~a~ 17 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAK 17 (143)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999997543
No 435
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=89.55 E-value=0.26 Score=54.31 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHcCC---------C-EEEEcCCCchH--HHHHHH-HHhc-CCCeEEEEcChHHHHHHHHHHHHHcC-
Q 009048 38 QFRDKQLDAIQAVLSGR---------D-CFCLMPTGGGK--SMCYQI-PALA-KPGIVLVVSPLIALMENQVIGLKEKG- 102 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~---------d-~lv~apTGsGK--Tl~~~l-p~l~-~~~~~lVi~P~~aL~~qq~~~l~~~g- 102 (545)
.+...|.+++-.....+ - +++--..|.|| |.+-++ --.. -.+++|+++-+..|--|--+.|+..|
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA 343 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGA 343 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcCC
Confidence 46778999886655322 2 33333455555 543222 2222 34689999999999877777777654
Q ss_pred --CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccc-c----Ch-h---hHHHHHhhhccCCccEEEEecccccc
Q 009048 103 --IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-A----TP-G---FMSKLKKIHSRGLLNLVAIDEAHCIS 171 (545)
Q Consensus 103 --i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~-~----t~-~---~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (545)
|.+..++-....+. ..-.....+--++++|.-.+ . +. . ++..|........=++||+||||.-.
T Consensus 344 ~~I~V~alnK~KYakI-----ss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAK 418 (1300)
T KOG1513|consen 344 TGIAVHALNKFKYAKI-----SSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAK 418 (1300)
T ss_pred CCccceehhhcccccc-----cccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhc
Confidence 44443332111110 01112223345778877532 1 11 1 22333333333334789999999865
Q ss_pred cc----CCCCHHHHHHHHHHHHhCCCcCEEEEEcCCC
Q 009048 172 SW----GHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (545)
Q Consensus 172 ~~----g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~ 204 (545)
.. |..--..=.....|.+.+|+.+++.-|||-.
T Consensus 419 NL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGA 455 (1300)
T KOG1513|consen 419 NLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGA 455 (1300)
T ss_pred ccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCC
Confidence 41 0000011144667888999999999999954
No 436
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=89.52 E-value=0.67 Score=48.21 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=16.6
Q ss_pred CCEEEEcCCCchHHHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~ 74 (545)
+.+++.||+|+|||+....-+
T Consensus 157 ~gvLL~GppGtGKT~lakaia 177 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVA 177 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 569999999999998654433
No 437
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.44 E-value=0.68 Score=49.23 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHcCCC--EEEEcCCCchHHHH
Q 009048 39 FRDKQLDAIQAVLSGRD--CFCLMPTGGGKSMC 69 (545)
Q Consensus 39 ~r~~Q~~~i~~il~g~d--~lv~apTGsGKTl~ 69 (545)
+.+.|...+..+++... ++|.+|||||||..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 47888888888886653 57899999999964
No 438
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.31 E-value=1.7 Score=48.27 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=26.0
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCC
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~ 203 (545)
.+..+++||||+|.+..- ....|.+.....|...++.|.+|-
T Consensus 125 ~~~~KVvIIdEad~Lt~~------a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTA------AFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred cCCCEEEEEeChhhcCHH------HHHHHHHHHhCCCCCeEEEEEeCC
Confidence 345789999999998752 224455555555554455555553
No 439
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.26 E-value=11 Score=36.79 Aligned_cols=77 Identities=12% Similarity=0.168 Sum_probs=46.5
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHH
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~ 92 (545)
-...+.++-.++-+..|.++....-+.|.-.-.+ -+---+-+++-+|+|+|||+|+-.-+ .+..-+.+-+---+|++
T Consensus 173 dvty~dvggckeqieklrevve~pll~perfv~l-gidppkgvllygppgtgktl~arava-nrtdacfirvigselvq 249 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPERFVNL-GIDPPKGVLLYGPPGTGKTLCARAVA-NRTDACFIRVIGSELVQ 249 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHHHHhhc-CCCCCCceEEeCCCCCchhHHHHHHh-cccCceEEeehhHHHHH
Confidence 4456667777888888888766555555322111 01123789999999999999864322 33344444444455654
No 440
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.25 E-value=3.8 Score=42.90 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCchHHHH
Q 009048 53 GRDCFCLMPTGGGKSMC 69 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (545)
..-+++.||+|+|||-.
T Consensus 113 ~nplfi~G~~GlGKTHL 129 (408)
T COG0593 113 YNPLFIYGGVGLGKTHL 129 (408)
T ss_pred CCcEEEECCCCCCHHHH
Confidence 35689999999999953
No 441
>PRK09087 hypothetical protein; Validated
Probab=89.23 E-value=3.3 Score=39.89 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
..+++.+|+|+|||...+
T Consensus 45 ~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 348999999999997544
No 442
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.21 E-value=0.55 Score=48.09 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=25.7
Q ss_pred HcCCCEEEEcCCCchHHHH--HHHHHhcCCCeEEEEcChHHH
Q 009048 51 LSGRDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIAL 90 (545)
Q Consensus 51 l~g~d~lv~apTGsGKTl~--~~lp~l~~~~~~lVi~P~~aL 90 (545)
..+++++++++||||||.. +++..+....+++++=-+.+|
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 3568999999999999953 223333344566665444444
No 443
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.12 E-value=0.54 Score=43.84 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHH
Q 009048 37 AQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il-~g~d~lv~apTGsGKTl~~ 70 (545)
..+.+.|.+.+.... .|..+++.+|||+|||...
T Consensus 8 g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 346788888887766 4678899999999999643
No 444
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.11 E-value=0.31 Score=48.23 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=16.2
Q ss_pred EEEEcCCCchHHH--HHHHHHhcC
Q 009048 56 CFCLMPTGGGKSM--CYQIPALAK 77 (545)
Q Consensus 56 ~lv~apTGsGKTl--~~~lp~l~~ 77 (545)
++|.+|||||||. +.++-.+.+
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhc
Confidence 6889999999995 445555544
No 445
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.08 E-value=3.5 Score=44.90 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=39.2
Q ss_pred cccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 009048 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~ 70 (545)
.+...|..++..+++...|....-+..-+|.+.+++-.- .-.-+++++|+|+|||+.+
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~-~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID-APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC-CCCceEEeCCCCccHHHHH
Confidence 356678888888888888776544444455555544322 1356899999999999854
No 446
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=89.07 E-value=7 Score=35.44 Aligned_cols=54 Identities=28% Similarity=0.293 Sum_probs=34.2
Q ss_pred HhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
......+.+++||+||+=....+|.--. ..+..+.+..|...-+.+|+--.|..
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~---~~v~~ll~~rp~~~evIlTGr~~p~~ 141 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDV---EEVVDLLKAKPEDLELVLTGRNAPKE 141 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCH---HHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 3344456799999999988878774211 34555556566555566676655543
No 447
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=89.02 E-value=0.97 Score=43.20 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=17.0
Q ss_pred CCEEEEcCCCchHHHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~ 74 (545)
-++++.+|+|.|||.+.+.-+
T Consensus 49 P~liisGpPG~GKTTsi~~LA 69 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLA 69 (333)
T ss_pred CceEeeCCCCCchhhHHHHHH
Confidence 378999999999998865433
No 448
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.94 E-value=2.9 Score=48.64 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
.+.++.+|+|+|||....
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 489999999999997643
No 449
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=88.74 E-value=3.1 Score=38.94 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=50.5
Q ss_pred CCccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc-----cccc-cccCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-IDRKD 326 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-----~~~G-iD~p~ 326 (545)
.+.++||.++++.-+.+.+..+... ++.+..++|+.+...+.... .+..+|+|+|.- +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4567999999999998887776553 67888999998876654332 267889999952 2222 45566
Q ss_pred CcEEEE
Q 009048 327 VRLVCH 332 (545)
Q Consensus 327 v~~VI~ 332 (545)
++++|.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 666663
No 450
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=88.63 E-value=1.2 Score=47.47 Aligned_cols=57 Identities=26% Similarity=0.311 Sum_probs=47.9
Q ss_pred CCCccEEEEecchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc
Q 009048 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (545)
Q Consensus 256 ~~~~~~IIf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (545)
....-+||+++||+-+.++...|.. -++.+..+.|||.....+.++++ ..+|+|||+
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 261 YVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred cCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 3333489999999999999999976 38899999999998887777765 778999996
No 451
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.51 E-value=3.2 Score=45.76 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=24.3
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCC
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~ 203 (545)
.+...++||||+|.+... ....|.+.....|..-++.+.+|-
T Consensus 117 ~~~~KVvIIDEa~~Ls~~------a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNS------AFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred cCCCEEEEEEChhhcCHH------HHHHHHHhhccCCCCEEEEEecCC
Confidence 355789999999998752 223444444444443344444443
No 452
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=88.37 E-value=2.1 Score=43.84 Aligned_cols=48 Identities=8% Similarity=0.008 Sum_probs=29.9
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHH
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~ 209 (545)
.+..+++||||||.+..- .-..|.+.....|+.-++.|+++-+..+..
T Consensus 108 ~~~~kvviI~~a~~~~~~------a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS------AANSLLKFLEEPSGGTTAILLTENKHQILP 155 (329)
T ss_pred ccCceEEEeehHhhhCHH------HHHHHHHHhcCCCCCceEEEEeCChHhCcH
Confidence 455789999999998652 224455555555555556666664444433
No 453
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.34 E-value=2.6 Score=46.89 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=14.8
Q ss_pred CEEEEcCCCchHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (545)
-+++.+|+|+|||..+.+
T Consensus 112 illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKI 129 (637)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 388999999999986543
No 454
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.20 E-value=3.4 Score=48.00 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=21.4
Q ss_pred HHHHHHHHHHc-------C-----C---CEEEEcCCCchHHHHHH
Q 009048 42 KQLDAIQAVLS-------G-----R---DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 42 ~Q~~~i~~il~-------g-----~---d~lv~apTGsGKTl~~~ 71 (545)
+|.+|+..+.. | + .+++.+|||+|||....
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETAL 614 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHH
Confidence 67777766531 1 1 37899999999997653
No 455
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=88.08 E-value=3 Score=43.42 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (545)
.|+..++.+|.|+|||...
T Consensus 168 kGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred cCceEEEeCCCCCChhHHH
Confidence 7889999999999999643
No 456
>PRK07773 replicative DNA helicase; Validated
Probab=87.99 E-value=1.8 Score=50.46 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=69.1
Q ss_pred HHHHHHHHcC----CCEEEEcCCCchHHHHHHHHH----hcCCCeEEEEcChHHHHHHHHHHHHH--cCCceeEec-ccc
Q 009048 44 LDAIQAVLSG----RDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQ 112 (545)
Q Consensus 44 ~~~i~~il~g----~d~lv~apTGsGKTl~~~lp~----l~~~~~~lVi~P~~aL~~qq~~~l~~--~gi~~~~~~-~~~ 112 (545)
...++.+..| .=+++.|++|.|||...+--+ ...+..+++++--- =..|.+.++.. .+++...+. +..
T Consensus 204 ~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEm-s~~ql~~R~~s~~~~i~~~~i~~g~l 282 (886)
T PRK07773 204 FTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEM-SKEQLVMRLLSAEAKIKLSDMRSGRM 282 (886)
T ss_pred hhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCC-CHHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 3444444433 336778899999996443222 22345677776211 11233334333 233222121 112
Q ss_pred cHHHHHHHHHhhhcCCCCccEEEE-CcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCH-HHHHHHH----
Q 009048 113 TMQVKTKIYEDLDSGKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFR-PSYRKLS---- 185 (545)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~il~~-tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr-~~~~~l~---- 185 (545)
.......+......- ....+.+. +|. +.-..+...+........+++||||=.+.|..-+. +-| ..+..+.
T Consensus 283 ~~~~~~~~~~a~~~l-~~~~i~i~d~~~-~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK 360 (886)
T PRK07773 283 SDDDWTRLARAMGEI-SEAPIFIDDTPN-LTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLK 360 (886)
T ss_pred CHHHHHHHHHHHHHH-hcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHH
Confidence 222222222111110 01223322 222 22223334444444445689999999998864211 112 1222222
Q ss_pred HHHHhCCCcCEEEEEcCC
Q 009048 186 SLRNYLPDVPILALTATA 203 (545)
Q Consensus 186 ~l~~~~~~~~~l~lTAT~ 203 (545)
.+... -++|++++|-.-
T Consensus 361 ~lAke-l~vpvi~lsQLn 377 (886)
T PRK07773 361 LLAKE-LEVPVVALSQLS 377 (886)
T ss_pred HHHHH-HCCcEEEecccC
Confidence 22222 278998887653
No 457
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=87.96 E-value=2.7 Score=39.74 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=22.8
Q ss_pred CCCEEEEcCCCchHHHHHH-HHH--hcCCCeEEEEcCh
Q 009048 53 GRDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVSPL 87 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp~--l~~~~~~lVi~P~ 87 (545)
|.-+.+.+|+|+|||...+ +.. ...+..++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4567899999999996543 222 2345567766653
No 458
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.94 E-value=3.1 Score=43.73 Aligned_cols=64 Identities=25% Similarity=0.240 Sum_probs=34.7
Q ss_pred HHhhhccCCccEEEEeccccccccCCCCHHHH--H-HHHHHHHh-----CCCcCEEEEEcCCChhhHHHHHH
Q 009048 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--R-KLSSLRNY-----LPDVPILALTATAAPKVQKDVME 213 (545)
Q Consensus 150 l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~--~-~l~~l~~~-----~~~~~~l~lTAT~~~~~~~~i~~ 213 (545)
+....+.....+++|||+|.+..--.+-...+ + +...+... .++-.++.+.||--|...++-..
T Consensus 237 lf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~ 308 (428)
T KOG0740|consen 237 LFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAAR 308 (428)
T ss_pred HHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHH
Confidence 34444445578899999998864111100000 1 11112221 24568899999987776665443
No 459
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.92 E-value=3 Score=43.38 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+.+++.||+|+|||....
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 367899999999996543
No 460
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.75 E-value=2.4 Score=40.24 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCchHHHH
Q 009048 53 GRDCFCLMPTGGGKSMC 69 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (545)
++.+++.||.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 36788999999999964
No 461
>CHL00195 ycf46 Ycf46; Provisional
Probab=87.55 E-value=3.5 Score=44.59 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.9
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
+.+++.||+|+|||+..-.
T Consensus 260 kGILL~GPpGTGKTllAka 278 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKA 278 (489)
T ss_pred ceEEEECCCCCcHHHHHHH
Confidence 5699999999999986543
No 462
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=87.53 E-value=0.4 Score=53.56 Aligned_cols=56 Identities=13% Similarity=0.030 Sum_probs=41.2
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEEcChHHHHHHHHHHHHH-cCCceeEec
Q 009048 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~aL~~qq~~~l~~-~gi~~~~~~ 109 (545)
.++++.||||||||..+.+|.+.. ++.+||+=|--++..-.....++ .|-.+..++
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~fd 233 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLRFE 233 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 579999999999999999998764 67788888999987544443323 354554443
No 463
>PF05729 NACHT: NACHT domain
Probab=87.53 E-value=2.8 Score=37.40 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=13.2
Q ss_pred CEEEEcCCCchHHHHH
Q 009048 55 DCFCLMPTGGGKSMCY 70 (545)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (545)
-+++.|++|+|||...
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3689999999999643
No 464
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=87.53 E-value=4.7 Score=41.92 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=27.2
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCCh
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~ 205 (545)
+...++||||+|.+.. .....|.+.....|...+++|++.-+.
T Consensus 140 ~~~kVviIDead~m~~------~aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 140 GGWRVVIVDTADEMNA------NAANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred CCCEEEEEechHhcCH------HHHHHHHHHHhcCCCCeEEEEEECCch
Confidence 4578999999998754 223455556666665555556555443
No 465
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.51 E-value=1.3 Score=43.94 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHc-C-CCEEEEcCCCchHHHH
Q 009048 39 FRDKQLDAIQAVLS-G-RDCFCLMPTGGGKSMC 69 (545)
Q Consensus 39 ~r~~Q~~~i~~il~-g-~d~lv~apTGsGKTl~ 69 (545)
+.+.|.+.+..++. . .-+++.+|||||||..
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTT 96 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH
Confidence 56778888877664 3 3578999999999964
No 466
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=87.50 E-value=3.4 Score=46.46 Aligned_cols=21 Identities=24% Similarity=0.418 Sum_probs=16.6
Q ss_pred CCEEEEcCCCchHHHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~ 74 (545)
+.+++.+|+|+|||.....-+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a 206 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIA 206 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 469999999999998654433
No 467
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=87.49 E-value=2.2 Score=43.29 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=27.5
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHH-HHHHHHhc--------CCCeEEEEcChH
Q 009048 46 AIQAVLSG-----RDCFCLMPTGGGKSM-CYQIPALA--------KPGIVLVVSPLI 88 (545)
Q Consensus 46 ~i~~il~g-----~d~lv~apTGsGKTl-~~~lp~l~--------~~~~~lVi~P~~ 88 (545)
.++.++.| .-+.+.+|+|+|||. |.++..-. .++.+++|.---
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 35666654 456799999999994 44433211 246788887433
No 468
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=87.41 E-value=4.7 Score=44.01 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=57.8
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHH-HH--HHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHH
Q 009048 46 AIQAVLS-----GRDCFCLMPTGGGKSMCY-QI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK 117 (545)
Q Consensus 46 ~i~~il~-----g~d~lv~apTGsGKTl~~-~l--p~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~ 117 (545)
.++.++. |.-+++.+++|+|||... ++ -++..+..+++++-.. -..+..+.+..+|+....
T Consensus 261 ~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~-~~~~i~~~~~~~g~~~~~---------- 329 (509)
T PRK09302 261 DLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE-SRAQLIRNARSWGIDLEK---------- 329 (509)
T ss_pred HHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC-CHHHHHHHHHHcCCChHH----------
Confidence 3455554 456788999999999533 22 2344567788876433 244555666666654211
Q ss_pred HHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009048 118 TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (545)
Q Consensus 118 ~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (545)
....+ ...+....|....-..+...+.........+++|||=.--+.
T Consensus 330 -----~~~~g--~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~ 376 (509)
T PRK09302 330 -----MEEKG--LLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALA 376 (509)
T ss_pred -----HhhcC--CceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 00111 122333333333222334444443334457899999876654
No 469
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=87.39 E-value=8.8 Score=37.30 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=58.0
Q ss_pred HHHHHH----HHHHcC---CCEEEEcCCCchHHHH--HHHHHhcCCCeEEEEcChHHHH--HHHHHHHHHcCCceeEecc
Q 009048 42 KQLDAI----QAVLSG---RDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIALM--ENQVIGLKEKGIAGEFLSS 110 (545)
Q Consensus 42 ~Q~~~i----~~il~g---~d~lv~apTGsGKTl~--~~lp~l~~~~~~lVi~P~~aL~--~qq~~~l~~~gi~~~~~~~ 110 (545)
.|++.+ ..++.| +++++.++.|+|||.. .++......+.-||=++.-.|. .+.++.++....+...+..
T Consensus 34 ~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~D 113 (249)
T PF05673_consen 34 RQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCD 113 (249)
T ss_pred HHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEEec
Confidence 455554 345555 6899999999999954 2445556677778888877663 3566666665555444443
Q ss_pred cc-------cHHHHHHHHHhhhcCCCCccEEEEC
Q 009048 111 TQ-------TMQVKTKIYEDLDSGKPSLRLLYVT 137 (545)
Q Consensus 111 ~~-------~~~~~~~~~~~~~~~~~~~~il~~t 137 (545)
.. ..+.-+.+.++.....|+--++|+|
T Consensus 114 DLsFe~~d~~yk~LKs~LeGgle~~P~NvliyAT 147 (249)
T PF05673_consen 114 DLSFEEGDTEYKALKSVLEGGLEARPDNVLIYAT 147 (249)
T ss_pred CCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEe
Confidence 32 2334444444444455555555555
No 470
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=87.33 E-value=5.7 Score=38.78 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=26.4
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEEcChHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMEN 93 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~aL~~q 93 (545)
++++..+|+|+|||+.+ -++.. ....++.+-..+|+-.
T Consensus 152 knVLFyGppGTGKTm~A--kalane~kvp~l~vkat~liGe 190 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA--KALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred ceeEEECCCCccHHHHH--HHHhcccCCceEEechHHHHHH
Confidence 79999999999999853 33432 3445666666666654
No 471
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=87.19 E-value=1.9 Score=44.32 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=26.3
Q ss_pred HHHHHcC-----CCEEEEcCCCchHH-HHHHHHHhc--------CCCeEEEEcCh
Q 009048 47 IQAVLSG-----RDCFCLMPTGGGKS-MCYQIPALA--------KPGIVLVVSPL 87 (545)
Q Consensus 47 i~~il~g-----~d~lv~apTGsGKT-l~~~lp~l~--------~~~~~lVi~P~ 87 (545)
++.++.| .-+.+.+|+|+||| +|.++..-. .++.+++|.--
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 5555544 45679999999999 454443211 13678888763
No 472
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=87.10 E-value=1.9 Score=46.72 Aligned_cols=87 Identities=23% Similarity=0.229 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHhcCCCCCCH----HHHHHHHHHH--cCCCEEEEcCCCchHHHHHH--HHHh-------cCCCeEEEEc
Q 009048 21 HEKEALVKLLRWHFGHAQFRD----KQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ--IPAL-------AKPGIVLVVS 85 (545)
Q Consensus 21 ~~~~~l~~~l~~~fg~~~~r~----~Q~~~i~~il--~g~d~lv~apTGsGKTl~~~--lp~l-------~~~~~~lVi~ 85 (545)
...+-|+..|.++-+ .++|. +|.+-=+.+. .++-++|++..|||||.+++ ++-| ...+.++|+.
T Consensus 189 ~~dEvL~~~Lek~ss-~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~ 267 (747)
T COG3973 189 GRDEVLQRVLEKNSS-AKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLG 267 (747)
T ss_pred hHHHHHHHHHHhccc-hhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEc
Confidence 344556677776432 33443 4444434444 35668999999999997654 1212 1245599999
Q ss_pred ChHHHHHHHHHHHHHcCCceeEe
Q 009048 86 PLIALMENQVIGLKEKGIAGEFL 108 (545)
Q Consensus 86 P~~aL~~qq~~~l~~~gi~~~~~ 108 (545)
|.+-++.=..+.|-++|...+..
T Consensus 268 PN~vFleYis~VLPeLGe~~V~q 290 (747)
T COG3973 268 PNRVFLEYISRVLPELGEEGVVQ 290 (747)
T ss_pred CcHHHHHHHHHhchhhccCceee
Confidence 99999877777788888765544
No 473
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=87.09 E-value=2.5 Score=47.26 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=52.7
Q ss_pred CccEEEEecchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc-----cccc-ccccCC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGM-GIDRKD 326 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~-----a~~~-GiD~p~ 326 (545)
...+||.|+|++-+.++++.+... ++.+..+||+.+...+...+ .+..+|||+|. .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchhh
Confidence 447899999999999998887642 78889999998766544332 34678999994 3333 367888
Q ss_pred CcEEEE
Q 009048 327 VRLVCH 332 (545)
Q Consensus 327 v~~VI~ 332 (545)
+++||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888874
No 474
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=87.07 E-value=5 Score=43.01 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=34.6
Q ss_pred HHHHHHHc-----CCCEEEEcCCCchHHHHHH-HHH-h-cCCCeEEEEcChHHHHHHHHHHHHHcCC
Q 009048 45 DAIQAVLS-----GRDCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (545)
Q Consensus 45 ~~i~~il~-----g~d~lv~apTGsGKTl~~~-lp~-l-~~~~~~lVi~P~~aL~~qq~~~l~~~gi 103 (545)
.-++.++. |.-+++.+++|+|||...+ +.. + ..++.+++++.--. ..|...+..++|+
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg~ 146 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLGL 146 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcCC
Confidence 34566664 3567899999999996443 211 2 33467888886433 3444444555543
No 475
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.92 E-value=0.66 Score=45.98 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=26.3
Q ss_pred cCCCEEEEcCCCchHHHHH--HHHHhcCC-CeEEEEcChHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCY--QIPALAKP-GIVLVVSPLIAL 90 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~--~lp~l~~~-~~~lVi~P~~aL 90 (545)
.+..+++.||||||||... ++..+... ..++++-...++
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4678999999999999542 33333444 667777666555
No 476
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=86.76 E-value=1.3 Score=41.25 Aligned_cols=35 Identities=29% Similarity=0.123 Sum_probs=23.5
Q ss_pred CEEEEcCCCchHHHHHHHHHh---cCCCeEEEEcChHH
Q 009048 55 DCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~l---~~~~~~lVi~P~~a 89 (545)
=.++.+|.+||||.-.+--+- ..+.+++|..|.+.
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 357899999999975332221 24667788777654
No 477
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=86.56 E-value=4.6 Score=43.30 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=23.6
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcC
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT 202 (545)
+...+|||||||.+..- ....|.+.....|..-++.++++
T Consensus 120 ~~~kvvIIdead~lt~~------~~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE------AFNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred CCCEEEEEecHHhhCHH------HHHHHHHHhhcCCCCceEEEEeC
Confidence 44689999999998642 22345555555444334444444
No 478
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.49 E-value=3.6 Score=44.84 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCC
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~ 204 (545)
+...++||||||.+.. .....|.+.....|..-.+.|++|-+
T Consensus 116 ~~~KVvIIDEad~Lt~------~A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 116 ARFKIFIIDEVHMLTK------EAFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred CCeEEEEEECcccCCH------HHHHHHHHHHhhcCCceEEEEEECCh
Confidence 4578999999999865 22344555555555443444555543
No 479
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=86.29 E-value=1.7 Score=52.11 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=58.0
Q ss_pred CccEEEEecchhhHHHHHHHHHhC----CCcE---EEecCCCCHHHHHHHHHHHHcCCCcEEEecccccc-ccc-cC-CC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG----GISC---AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM-GID-RK-DV 327 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~----g~~~---~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~-GiD-~p-~v 327 (545)
+.+++|.++|+.-+.++++.+... |+.+ ..|||+++..++....+.+.+|..+|||+|...-. .++ +. ++
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~ 200 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKF 200 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCC
Confidence 467999999999999998888763 4443 36899999999999899999999999999985322 111 12 57
Q ss_pred cEEEEe
Q 009048 328 RLVCHF 333 (545)
Q Consensus 328 ~~VI~~ 333 (545)
+++|.-
T Consensus 201 ~~iVvD 206 (1171)
T TIGR01054 201 DFIFVD 206 (1171)
T ss_pred CEEEEe
Confidence 777743
No 480
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.28 E-value=2.3 Score=45.82 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=61.6
Q ss_pred ccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc-c------ccc-ccCCCcEE
Q 009048 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-G------MGI-DRKDVRLV 330 (545)
Q Consensus 259 ~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-~------~Gi-D~p~v~~V 330 (545)
+.+||.+++++-+.+....|...|+.+..++++.+..++..++.....|+.+|+++|.-. . ..+ ...++.+|
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~i 131 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLI 131 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEE
Confidence 468999999999999999999999999999999999999999999999999999999742 1 122 44567777
Q ss_pred EE
Q 009048 331 CH 332 (545)
Q Consensus 331 I~ 332 (545)
|.
T Consensus 132 Vi 133 (470)
T TIGR00614 132 AV 133 (470)
T ss_pred EE
Confidence 63
No 481
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=86.22 E-value=0.93 Score=48.87 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=27.4
Q ss_pred hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC--CCcCEEEEEcCCCh
Q 009048 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAP 205 (545)
Q Consensus 153 ~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~--~~~~~l~lTAT~~~ 205 (545)
....++..++||||+|.++.-+ ...+++.+ |...++++=||-.+
T Consensus 114 ~P~~~ryKVyiIDEvHMLS~~a---------fNALLKTLEEPP~hV~FIlATTe~ 159 (515)
T COG2812 114 APSEGRYKVYIIDEVHMLSKQA---------FNALLKTLEEPPSHVKFILATTEP 159 (515)
T ss_pred CCccccceEEEEecHHhhhHHH---------HHHHhcccccCccCeEEEEecCCc
Confidence 3345668999999999998632 23344443 34446666676543
No 482
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.05 E-value=4.6 Score=46.84 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+++++++|+|.|||....
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 589999999999997654
No 483
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.87 E-value=0.8 Score=47.59 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=17.2
Q ss_pred CCEEEEcCCCchHHHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~ 74 (545)
.++|+.+|||+|||+..+--|
T Consensus 227 SNvLllGPtGsGKTllaqTLA 247 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLA 247 (564)
T ss_pred ccEEEECCCCCchhHHHHHHH
Confidence 479999999999999776433
No 484
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.84 E-value=0.82 Score=49.23 Aligned_cols=57 Identities=18% Similarity=0.122 Sum_probs=33.2
Q ss_pred HHHHHHHHHH--cCCCcEEEeccccccccccCCC---cEEE---EeCCCCC----HHHHHHHHhhccCC
Q 009048 296 ARSSVLDDWI--SSRKQVVVATVAFGMGIDRKDV---RLVC---HFNIPKS----MEAFYQESGRAGRD 352 (545)
Q Consensus 296 ~R~~~~~~f~--~g~~~VLVaT~a~~~GiD~p~v---~~VI---~~~~p~s----~~~y~Qr~GRagR~ 352 (545)
+-...+.... ..-+++|.+.+.+..|.|+-+. |.+. ...-.+. ...=.|-+||..|.
T Consensus 316 e~~lllnsled~dnpir~if~vd~lnegwdvlnlfdmr~i~rrk~~an~kk~~~~TikekQLIGRGaRY 384 (812)
T COG3421 316 ESMLLLNSLEDRDNPIRVIFSVDKLNEGWDVLNLFDMRGIKRRKKMANDKKLAAATIKEKQLIGRGARY 384 (812)
T ss_pred HHHHHHhhhhhcCCCeEEEEEeecccccchhhhhhhHHHHHHHHhhhcccchhhhhhhHHHHHhcccee
Confidence 3344445444 3568999999999999996432 1110 0000112 33447888888884
No 485
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.83 E-value=1.2 Score=48.03 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHcCC--CEEEEcCCCchHHHH
Q 009048 39 FRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMC 69 (545)
Q Consensus 39 ~r~~Q~~~i~~il~g~--d~lv~apTGsGKTl~ 69 (545)
+.+.|.+.+..+.... -+++.+|||||||..
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 5678888888877543 368999999999965
No 486
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=85.62 E-value=1.4 Score=45.50 Aligned_cols=31 Identities=19% Similarity=-0.052 Sum_probs=20.1
Q ss_pred CEEEEcCCCchHHHHHHHHHhcCCCeEEEEc
Q 009048 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~ 85 (545)
-+++.+|.|+|||+..-..+-..+-..|+++
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~~i~vs 180 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIEPIVMS 180 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence 4678999999999865544444343334433
No 487
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.49 E-value=7.1 Score=41.52 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=50.2
Q ss_pred Ccc-EEEEecchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc-----cc-ccccccCC
Q 009048 258 DTC-AIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AF-GMGIDRKD 326 (545)
Q Consensus 258 ~~~-~IIf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~-----a~-~~GiD~p~ 326 (545)
.+| .+|.|+|++-|.++....++ .|+.+...|||.+..+...-++ -...|||||. .. --++|+.+
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhccccee
Confidence 344 56668999998887655544 5889999999999887765554 4567999995 12 23567777
Q ss_pred CcEEE
Q 009048 327 VRLVC 331 (545)
Q Consensus 327 v~~VI 331 (545)
|.+++
T Consensus 371 vS~LV 375 (731)
T KOG0339|consen 371 VSYLV 375 (731)
T ss_pred eeEEE
Confidence 77766
No 488
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.41 E-value=6.6 Score=42.86 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+-+|+.+|+|+|||..+.
T Consensus 224 rGvLlHGPPGCGKT~lA~ 241 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKTSLAN 241 (802)
T ss_pred CceeeeCCCCccHHHHHH
Confidence 679999999999997543
No 489
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.33 E-value=3 Score=42.97 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchHHHH
Q 009048 53 GRDCFCLMPTGGGKSMC 69 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (545)
+..+++.+|||||||..
T Consensus 122 ~g~ili~G~tGSGKTT~ 138 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT 138 (343)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46789999999999964
No 490
>PRK10436 hypothetical protein; Provisional
Probab=85.19 E-value=1.8 Score=46.38 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHcC--CCEEEEcCCCchHHHH
Q 009048 39 FRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMC 69 (545)
Q Consensus 39 ~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~ 69 (545)
+.+.|.+.+..+... .-+++.+|||||||..
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt 234 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT 234 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHH
Confidence 567788888777643 3578999999999974
No 491
>PRK04841 transcriptional regulator MalT; Provisional
Probab=85.16 E-value=13 Score=43.42 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=24.4
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCC-cCEEEEEcCCC
Q 009048 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204 (545)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~-~~~l~lTAT~~ 204 (545)
--+||||++|.+.+- .....+..+....|. ..+|+.|-+.+
T Consensus 122 ~~~lvlDD~h~~~~~-----~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNP-----EIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCCh-----HHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 457999999987531 112345556666554 55556565543
No 492
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.78 E-value=6.8 Score=45.50 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=21.1
Q ss_pred HHHHHHHHH----c--CCCEEEEcCCCchHHHHHH
Q 009048 43 QLDAIQAVL----S--GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 43 Q~~~i~~il----~--g~d~lv~apTGsGKTl~~~ 71 (545)
|.+.|..+. . ..+.++++|+|+|||...-
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 666565554 2 2589999999999997643
No 493
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=84.56 E-value=2.9 Score=42.52 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=29.4
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHH
Q 009048 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (545)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~ 209 (545)
.+..+++|||+||.+..- .-..|.+.....|+. ++.|.++-+.....
T Consensus 122 ~~~~kVvII~~ae~m~~~------aaNaLLK~LEEPp~~-~fILi~~~~~~Ll~ 168 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEA------AANALLKTLEEPGNG-TLILIAPSPESLLP 168 (314)
T ss_pred cCCceEEEEEchhhcCHH------HHHHHHHHHhCCCCC-eEEEEECChHhCcH
Confidence 355789999999998652 224566666666654 55555554444333
No 494
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=84.49 E-value=1.4 Score=50.13 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH-HH-HHh---cCCCeEEEEcChHHHHHHHHHHHHHcCCc
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY-QI-PAL---AKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~-~l-p~l---~~~~~~lVi~P~~aL~~qq~~~l~~~gi~ 104 (545)
.|+|-|.++|.+-....++.+++|+|+|||-.. ++ -.+ ....+++|++...+-+++..+.+.+..+.
T Consensus 738 ~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~d 809 (1320)
T KOG1806|consen 738 KFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDVD 809 (1320)
T ss_pred ccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhcccc
Confidence 468899999999888899999999999999432 22 222 34688999999988888887777665443
No 495
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=84.46 E-value=1 Score=42.67 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=16.6
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCeEEE
Q 009048 56 CFCLMPTGGGKSMCYQIPALAKPGIVLV 83 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~l~~~~~~lV 83 (545)
.++.+|||+|||......+-..+..+|+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~ 31 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVIS 31 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEE
Confidence 4789999999997655444444443333
No 496
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=84.45 E-value=1 Score=42.53 Aligned_cols=24 Identities=33% Similarity=0.672 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchHHHHHH-HHHh
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ-IPAL 75 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~-lp~l 75 (545)
.++++++.+|.|+|||+... +|.+
T Consensus 21 G~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CC--EEEES-CCCTHHHHHHHHHHC
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999997654 3444
No 497
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=84.35 E-value=5.8 Score=41.65 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=24.8
Q ss_pred EEEEcCCCchHHHHHHHHH----hc--CCCeEEEEcChHH
Q 009048 56 CFCLMPTGGGKSMCYQIPA----LA--KPGIVLVVSPLIA 89 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~----l~--~~~~~lVi~P~~a 89 (545)
.++.++.|||||.+..+-+ +. .+..++++-|+..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 43 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQN 43 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhh
Confidence 5788999999997654332 23 5667888888776
No 498
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.25 E-value=0.88 Score=34.14 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchHHHH
Q 009048 53 GRDCFCLMPTGGGKSMC 69 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (545)
|..+++.+|+|+|||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999974
No 499
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=84.21 E-value=4.9 Score=45.72 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCCCCCH---HH----------HHHHHHHHc------CCCEEEEcCCCchHHHHHH---HHHhcCCCeEE
Q 009048 25 ALVKLLRWHFGHAQFRD---KQ----------LDAIQAVLS------GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVL 82 (545)
Q Consensus 25 ~l~~~l~~~fg~~~~r~---~Q----------~~~i~~il~------g~d~lv~apTGsGKTl~~~---lp~l~~~~~~l 82 (545)
.....+.+.||-...-. .+ ...++.++. |.-+.+.+|+|+|||...+ ..+...++.++
T Consensus 13 ~~~~~~~~~~g~~~~~~l~~~~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~ 92 (790)
T PRK09519 13 LAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAA 92 (790)
T ss_pred HHHHHHHHHhccchhcccccccccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 34555666787643322 11 224566665 3457899999999996432 33345678888
Q ss_pred EEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEE
Q 009048 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (545)
Q Consensus 83 Vi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~i 162 (545)
+|..--++-.. .++++|+... ++++..|... ......+......+.+++|
T Consensus 93 yId~E~t~~~~---~A~~lGvDl~-------------------------~llv~~~~~~--E~~l~~i~~lv~~~~~~LV 142 (790)
T PRK09519 93 FIDAEHALDPD---YAKKLGVDTD-------------------------SLLVSQPDTG--EQALEIADMLIRSGALDIV 142 (790)
T ss_pred EECCccchhHH---HHHHcCCChh-------------------------HeEEecCCCH--HHHHHHHHHHhhcCCCeEE
Confidence 88876666532 4555555321 1223333211 1122223333334568999
Q ss_pred EEecccccc
Q 009048 163 AIDEAHCIS 171 (545)
Q Consensus 163 ViDEaH~i~ 171 (545)
|||-+-.+.
T Consensus 143 VIDSI~aL~ 151 (790)
T PRK09519 143 VIDSVAALV 151 (790)
T ss_pred EEcchhhhc
Confidence 999887665
No 500
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=84.09 E-value=22 Score=36.93 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchHHHH
Q 009048 53 GRDCFCLMPTGGGKSMC 69 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (545)
.+.+.+.||.|.|||+.
T Consensus 62 ~~GlYl~G~vG~GKT~L 78 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML 78 (362)
T ss_pred CceEEEECCCCCchhHH
Confidence 35789999999999974
Done!