Query 009048
Match_columns 545
No_of_seqs 387 out of 2893
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 17:38:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 3.9E-74 1.3E-78 629.1 42.2 406 19-439 25-434 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 3.4E-73 1.2E-77 615.2 44.2 405 15-439 2-406 (523)
3 2db3_A ATP-dependent RNA helic 100.0 7.2E-51 2.5E-55 431.5 36.8 334 14-365 55-407 (434)
4 3sqw_A ATP-dependent RNA helic 100.0 1.5E-50 5.1E-55 444.5 30.1 344 22-378 28-411 (579)
5 3i5x_A ATP-dependent RNA helic 100.0 3.5E-50 1.2E-54 440.3 32.4 343 22-377 79-461 (563)
6 2i4i_A ATP-dependent RNA helic 100.0 2.5E-49 8.4E-54 416.8 34.7 347 14-376 14-394 (417)
7 2j0s_A ATP-dependent RNA helic 100.0 1.5E-48 5.2E-53 410.2 38.8 346 14-377 36-395 (410)
8 1s2m_A Putative ATP-dependent 100.0 3.1E-48 1.1E-52 406.3 35.6 346 14-378 20-378 (400)
9 1xti_A Probable ATP-dependent 100.0 7E-48 2.4E-52 402.0 36.8 343 16-375 9-368 (391)
10 3eiq_A Eukaryotic initiation f 100.0 4.7E-48 1.6E-52 406.4 32.1 346 15-377 40-399 (414)
11 1hv8_A Putative ATP-dependent 100.0 7.1E-47 2.4E-51 390.3 37.9 341 16-378 7-358 (367)
12 3pey_A ATP-dependent RNA helic 100.0 1E-46 3.4E-51 393.1 37.2 340 15-376 5-368 (395)
13 3fht_A ATP-dependent RNA helic 100.0 5.4E-47 1.8E-51 397.9 35.1 346 10-377 20-392 (412)
14 2z0m_A 337AA long hypothetical 100.0 5.4E-47 1.8E-51 386.8 32.1 325 23-374 2-331 (337)
15 1fuu_A Yeast initiation factor 100.0 2.3E-48 7.8E-53 405.9 19.7 344 13-375 19-376 (394)
16 3oiy_A Reverse gyrase helicase 100.0 3.3E-46 1.1E-50 393.3 29.4 328 23-375 7-373 (414)
17 3fmp_B ATP-dependent RNA helic 100.0 9.4E-47 3.2E-51 405.1 16.1 341 12-374 89-456 (479)
18 4gl2_A Interferon-induced heli 100.0 2E-46 6.7E-51 420.9 16.9 385 38-434 7-593 (699)
19 4a4z_A Antiviral helicase SKI2 100.0 1.8E-44 6.1E-49 414.8 31.0 393 20-439 22-577 (997)
20 2ykg_A Probable ATP-dependent 100.0 1.3E-44 4.5E-49 405.9 21.1 391 28-439 4-587 (696)
21 3fho_A ATP-dependent RNA helic 100.0 4.1E-45 1.4E-49 394.8 14.6 341 17-376 121-482 (508)
22 3l9o_A ATP-dependent RNA helic 100.0 6.6E-42 2.3E-46 396.8 25.9 339 16-377 163-610 (1108)
23 4a2p_A RIG-I, retinoic acid in 100.0 1.7E-41 5.9E-46 370.0 26.8 320 35-370 4-513 (556)
24 2p6r_A Afuhel308 helicase; pro 100.0 2.2E-41 7.6E-46 379.6 26.9 328 17-368 3-391 (702)
25 2va8_A SSO2462, SKI2-type heli 100.0 2.7E-40 9.3E-45 371.7 33.1 324 16-366 9-409 (715)
26 4a2w_A RIG-I, retinoic acid in 100.0 3.5E-41 1.2E-45 387.4 26.4 320 33-368 243-752 (936)
27 4ddu_A Reverse gyrase; topoiso 100.0 1.5E-40 5.2E-45 385.3 31.4 292 24-337 65-388 (1104)
28 2zj8_A DNA helicase, putative 100.0 5.9E-41 2E-45 377.2 24.2 327 17-368 3-390 (720)
29 3tbk_A RIG-I helicase domain; 100.0 1.1E-40 3.7E-45 363.3 25.4 316 38-371 4-513 (555)
30 1wp9_A ATP-dependent RNA helic 100.0 2.3E-39 7.8E-44 345.6 34.2 315 38-369 9-479 (494)
31 1gm5_A RECG; helicase, replica 100.0 7E-41 2.4E-45 374.1 22.4 319 22-365 353-697 (780)
32 2xgj_A ATP-dependent RNA helic 100.0 9.5E-40 3.3E-44 375.6 32.0 322 31-377 80-512 (1010)
33 4a2q_A RIG-I, retinoic acid in 100.0 9.7E-40 3.3E-44 371.0 30.4 322 31-369 241-753 (797)
34 1gku_B Reverse gyrase, TOP-RG; 100.0 3.9E-40 1.3E-44 381.8 20.4 324 23-376 43-465 (1054)
35 1tf5_A Preprotein translocase 100.0 6.4E-38 2.2E-42 344.3 35.4 321 30-367 76-547 (844)
36 2eyq_A TRCF, transcription-rep 100.0 7.3E-38 2.5E-42 365.0 37.7 323 18-366 584-923 (1151)
37 2oca_A DAR protein, ATP-depend 100.0 1.2E-38 4.2E-43 344.6 20.9 301 38-365 113-455 (510)
38 4f92_B U5 small nuclear ribonu 100.0 5.8E-37 2E-41 367.1 33.9 328 35-378 923-1321(1724)
39 2jlq_A Serine protease subunit 100.0 3.3E-38 1.1E-42 335.6 18.2 284 35-364 1-310 (451)
40 2fwr_A DNA repair protein RAD2 100.0 8.4E-38 2.9E-42 334.8 17.7 287 38-361 93-448 (472)
41 4f92_B U5 small nuclear ribonu 100.0 3.3E-37 1.1E-41 369.2 24.1 338 24-378 64-486 (1724)
42 2wv9_A Flavivirin protease NS2 100.0 3E-38 1E-42 348.7 10.5 285 38-371 215-542 (673)
43 1yks_A Genome polyprotein [con 100.0 6.2E-38 2.1E-42 332.2 12.0 277 49-374 4-311 (440)
44 2whx_A Serine protease/ntpase/ 100.0 1.6E-37 5.5E-42 340.7 14.4 308 20-375 155-491 (618)
45 1nkt_A Preprotein translocase 100.0 2.3E-34 8E-39 315.5 35.3 326 28-367 102-619 (922)
46 2fsf_A Preprotein translocase 100.0 3E-35 1E-39 322.2 27.1 322 28-366 65-584 (853)
47 3o8b_A HCV NS3 protease/helica 100.0 1.7E-36 5.8E-41 330.3 15.6 277 39-369 218-518 (666)
48 2xau_A PRE-mRNA-splicing facto 100.0 1.4E-35 5E-40 333.0 23.3 327 14-367 71-445 (773)
49 2z83_A Helicase/nucleoside tri 100.0 9.2E-37 3.1E-41 325.0 11.8 269 47-365 15-313 (459)
50 3h1t_A Type I site-specific re 100.0 8.5E-35 2.9E-39 320.0 25.7 305 38-365 178-558 (590)
51 2v6i_A RNA helicase; membrane, 100.0 1.2E-35 4.2E-40 313.9 17.6 267 52-363 1-288 (431)
52 3dmq_A RNA polymerase-associat 100.0 5.6E-34 1.9E-38 328.1 28.4 316 37-363 152-611 (968)
53 3rc3_A ATP-dependent RNA helic 100.0 1.5E-33 5E-38 310.5 29.8 286 49-379 151-458 (677)
54 1z63_A Helicase of the SNF2/RA 100.0 9.2E-32 3.1E-36 290.0 24.0 299 37-361 36-447 (500)
55 3jux_A Protein translocase sub 100.0 5E-30 1.7E-34 275.6 36.8 335 27-378 65-607 (822)
56 1z3i_X Similar to RAD54-like; 100.0 1.3E-28 4.3E-33 272.7 33.4 310 38-361 55-522 (644)
57 3mwy_W Chromo domain-containin 100.0 5.5E-29 1.9E-33 282.3 25.1 311 37-361 235-678 (800)
58 1c4o_A DNA nucleotide excision 100.0 1.8E-27 6.2E-32 263.5 30.0 201 160-374 327-559 (664)
59 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 4.3E-27 1.5E-31 269.4 25.0 325 20-363 247-707 (1038)
60 3fe2_A Probable ATP-dependent 99.9 1.5E-26 5E-31 225.4 21.0 196 13-225 27-237 (242)
61 2d7d_A Uvrabc system protein B 99.9 1.5E-25 5E-30 248.1 29.4 116 257-373 444-564 (661)
62 2hjv_A ATP-dependent RNA helic 99.9 4.3E-26 1.5E-30 208.4 19.6 151 226-377 4-154 (163)
63 3iuy_A Probable ATP-dependent 99.9 1.9E-26 6.4E-31 222.4 18.1 187 20-223 25-226 (228)
64 1q0u_A Bstdead; DEAD protein, 99.9 7.3E-26 2.5E-30 216.9 18.5 197 16-231 5-217 (219)
65 3ly5_A ATP-dependent RNA helic 99.9 1.1E-25 3.6E-30 222.0 20.1 182 15-213 52-252 (262)
66 2pl3_A Probable ATP-dependent 99.9 1.2E-25 4E-30 218.0 19.7 193 13-225 23-232 (236)
67 2rb4_A ATP-dependent RNA helic 99.9 1.3E-25 4.4E-30 207.7 18.7 149 230-378 6-160 (175)
68 3ber_A Probable ATP-dependent 99.9 1.9E-25 6.4E-30 218.6 19.7 193 13-224 41-246 (249)
69 1vec_A ATP-dependent RNA helic 99.9 2.9E-25 9.9E-30 210.4 20.1 190 15-223 3-205 (206)
70 3eaq_A Heat resistant RNA depe 99.9 2.5E-25 8.6E-30 212.2 19.5 137 242-378 15-151 (212)
71 2oxc_A Probable ATP-dependent 99.9 3E-25 1E-29 214.4 18.4 194 13-224 22-227 (230)
72 1qde_A EIF4A, translation init 99.9 3.9E-25 1.3E-29 212.4 19.1 192 14-224 13-215 (224)
73 1t6n_A Probable ATP-dependent 99.9 5.9E-25 2E-29 210.6 19.9 193 15-223 14-218 (220)
74 3bor_A Human initiation factor 99.9 3.1E-25 1.1E-29 215.3 18.2 195 13-224 28-233 (237)
75 1fuk_A Eukaryotic initiation f 99.9 2E-25 7E-30 204.3 15.9 135 243-377 15-149 (165)
76 1t5i_A C_terminal domain of A 99.9 4.1E-25 1.4E-29 203.7 18.0 134 243-376 16-150 (172)
77 2gxq_A Heat resistant RNA depe 99.9 1.2E-24 4.3E-29 206.1 20.7 190 17-224 3-204 (207)
78 2jgn_A DBX, DDX3, ATP-dependen 99.9 5.9E-25 2E-29 205.0 16.2 147 229-376 17-164 (185)
79 1wrb_A DJVLGB; RNA helicase, D 99.9 3.4E-25 1.2E-29 217.1 14.5 197 13-225 21-239 (253)
80 3dkp_A Probable ATP-dependent 99.9 5.3E-25 1.8E-29 214.6 15.2 191 21-226 35-241 (245)
81 3fmo_B ATP-dependent RNA helic 99.9 8.3E-25 2.8E-29 219.8 15.4 192 12-225 89-297 (300)
82 2p6n_A ATP-dependent RNA helic 99.9 2.7E-24 9.1E-29 201.6 17.4 143 230-374 28-171 (191)
83 2ipc_A Preprotein translocase 99.9 9.7E-22 3.3E-26 215.2 35.7 324 26-367 68-700 (997)
84 3i32_A Heat resistant RNA depe 99.9 5.1E-24 1.8E-28 213.1 16.4 137 243-379 13-149 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 4.4E-26 1.5E-30 209.8 0.0 145 231-375 3-147 (170)
86 2vl7_A XPD; helicase, unknown 99.9 8.2E-23 2.8E-27 221.6 18.2 317 33-365 3-521 (540)
87 3crv_A XPD/RAD3 related DNA he 99.8 7.4E-19 2.5E-23 191.1 26.8 316 35-365 1-531 (551)
88 3b6e_A Interferon-induced heli 99.8 2.1E-19 7.1E-24 170.8 9.6 162 34-202 29-216 (216)
89 4a15_A XPD helicase, ATP-depen 99.7 8.2E-17 2.8E-21 176.7 22.5 163 195-365 377-584 (620)
90 1rif_A DAR protein, DNA helica 99.7 4.9E-18 1.7E-22 168.9 11.4 145 38-207 113-266 (282)
91 2fz4_A DNA repair protein RAD2 99.7 7.7E-18 2.6E-22 163.1 12.3 139 38-207 93-232 (237)
92 1z5z_A Helicase of the SNF2/RA 99.7 9.6E-18 3.3E-22 165.5 10.4 119 243-361 95-218 (271)
93 3llm_A ATP-dependent RNA helic 99.6 5.8E-16 2E-20 149.6 12.1 152 38-207 61-222 (235)
94 1w36_D RECD, exodeoxyribonucle 98.4 2.2E-06 7.4E-11 93.8 14.7 77 23-99 134-217 (608)
95 4b3f_X DNA-binding protein smu 98.1 9E-06 3.1E-10 89.7 11.2 72 37-108 188-263 (646)
96 2gk6_A Regulator of nonsense t 98.0 7.9E-05 2.7E-09 81.7 14.8 71 36-106 178-252 (624)
97 2xzl_A ATP-dependent helicase 97.8 0.00015 5.2E-09 81.5 13.8 69 37-105 359-431 (802)
98 2wjy_A Regulator of nonsense t 97.8 0.00019 6.4E-09 80.7 13.7 70 37-106 355-428 (800)
99 3upu_A ATP-dependent DNA helic 97.6 0.00021 7E-09 75.4 11.0 64 34-97 21-93 (459)
100 3e1s_A Exodeoxyribonuclease V, 97.5 0.00053 1.8E-08 74.2 11.9 59 38-96 189-250 (574)
101 3lfu_A DNA helicase II; SF1 he 97.4 0.025 8.6E-07 61.9 24.1 63 37-101 8-77 (647)
102 3hgt_A HDA1 complex subunit 3; 96.9 0.0039 1.3E-07 61.7 9.9 126 244-374 109-246 (328)
103 3ec2_A DNA replication protein 96.7 0.011 3.9E-07 53.2 11.3 30 41-70 17-55 (180)
104 3vkw_A Replicase large subunit 96.6 0.0054 1.9E-07 63.5 9.4 44 55-100 163-206 (446)
105 2o0j_A Terminase, DNA packagin 96.3 0.042 1.4E-06 56.0 13.5 63 38-100 163-230 (385)
106 2qby_B CDC6 homolog 3, cell di 95.9 0.059 2E-06 54.5 12.3 17 54-70 46-62 (384)
107 3te6_A Regulatory protein SIR3 95.8 0.1 3.5E-06 51.7 13.3 18 53-70 45-62 (318)
108 2chg_A Replication factor C sm 95.8 0.067 2.3E-06 49.0 11.4 17 54-70 39-55 (226)
109 3vfd_A Spastin; ATPase, microt 95.5 0.044 1.5E-06 56.0 9.6 33 53-85 148-180 (389)
110 2b8t_A Thymidine kinase; deoxy 95.4 0.011 3.7E-07 55.6 4.4 37 52-88 11-50 (223)
111 4a1f_A DNAB helicase, replicat 95.4 0.072 2.5E-06 53.3 10.6 150 46-203 35-206 (338)
112 1jbk_A CLPB protein; beta barr 95.3 0.11 3.7E-06 46.3 10.7 17 54-70 44-60 (195)
113 3u61_B DNA polymerase accessor 95.3 0.052 1.8E-06 53.8 9.2 43 158-206 105-148 (324)
114 3cpe_A Terminase, DNA packagin 95.3 0.12 3.9E-06 56.1 12.5 63 38-100 163-230 (592)
115 2r6a_A DNAB helicase, replicat 95.2 0.058 2E-06 56.4 9.6 125 46-172 192-327 (454)
116 1a5t_A Delta prime, HOLB; zinc 95.1 0.045 1.5E-06 54.7 8.0 33 39-71 3-42 (334)
117 2kjq_A DNAA-related protein; s 95.0 0.024 8.3E-07 49.6 5.1 19 52-70 35-53 (149)
118 3eie_A Vacuolar protein sortin 95.0 0.073 2.5E-06 52.8 9.2 58 13-72 13-70 (322)
119 2p65_A Hypothetical protein PF 95.0 0.13 4.5E-06 45.6 10.2 18 53-70 43-60 (187)
120 3bos_A Putative DNA replicatio 94.9 0.06 2.1E-06 50.3 8.1 18 53-70 52-69 (242)
121 2q6t_A DNAB replication FORK h 94.9 0.047 1.6E-06 56.9 7.9 153 46-202 189-362 (444)
122 3syl_A Protein CBBX; photosynt 94.9 0.21 7.2E-06 48.8 12.3 18 54-71 68-85 (309)
123 1sxj_A Activator 1 95 kDa subu 94.8 0.075 2.6E-06 56.5 9.3 43 158-204 148-190 (516)
124 2zpa_A Uncharacterized protein 94.7 0.042 1.4E-06 59.7 6.9 54 38-91 175-230 (671)
125 1sxj_B Activator 1 37 kDa subu 94.7 0.096 3.3E-06 51.4 9.2 16 55-70 44-59 (323)
126 3h4m_A Proteasome-activating n 94.7 0.12 4.1E-06 49.9 9.7 56 14-72 13-70 (285)
127 1l8q_A Chromosomal replication 94.6 0.064 2.2E-06 53.1 7.7 19 53-71 37-55 (324)
128 3co5_A Putative two-component 94.6 0.13 4.3E-06 44.4 8.7 20 51-70 25-44 (143)
129 1d2n_A N-ethylmaleimide-sensit 94.5 0.075 2.6E-06 51.2 7.8 19 54-72 65-83 (272)
130 2v1u_A Cell division control p 94.5 0.2 6.9E-06 50.3 11.3 18 53-70 44-61 (387)
131 2w58_A DNAI, primosome compone 94.4 0.23 7.8E-06 45.2 10.5 17 54-70 55-71 (202)
132 3pvs_A Replication-associated 94.4 0.057 1.9E-06 56.3 7.0 21 54-74 51-71 (447)
133 1fnn_A CDC6P, cell division co 94.4 0.3 1E-05 49.1 12.3 17 55-71 46-62 (389)
134 3b9p_A CG5977-PA, isoform A; A 94.3 0.45 1.5E-05 46.1 13.0 20 53-72 54-73 (297)
135 1gm5_A RECG; helicase, replica 94.3 0.1 3.4E-06 58.3 9.0 77 258-334 417-498 (780)
136 1xwi_A SKD1 protein; VPS4B, AA 94.2 0.22 7.5E-06 49.4 10.6 19 54-72 46-64 (322)
137 2orw_A Thymidine kinase; TMTK, 94.2 0.11 3.8E-06 47.0 7.7 37 52-88 2-41 (184)
138 3cf0_A Transitional endoplasmi 94.2 0.28 9.4E-06 48.1 11.0 23 52-74 48-70 (301)
139 2qz4_A Paraplegin; AAA+, SPG7, 94.1 0.17 5.7E-06 48.1 9.2 19 53-71 39-57 (262)
140 3bh0_A DNAB-like replicative h 94.1 0.41 1.4E-05 47.3 12.2 122 45-172 56-195 (315)
141 2zan_A Vacuolar protein sortin 94.1 0.19 6.5E-06 52.3 10.1 21 54-74 168-188 (444)
142 2gno_A DNA polymerase III, gam 93.9 0.14 4.6E-06 50.5 8.2 45 157-207 81-125 (305)
143 1sxj_D Activator 1 41 kDa subu 93.8 0.37 1.3E-05 47.9 11.5 17 54-70 59-75 (353)
144 2qp9_X Vacuolar protein sortin 93.8 0.14 4.9E-06 51.5 8.4 19 54-72 85-103 (355)
145 1uaa_A REP helicase, protein ( 93.8 0.051 1.7E-06 59.9 5.4 61 38-100 2-69 (673)
146 1iqp_A RFCS; clamp loader, ext 93.7 0.35 1.2E-05 47.4 10.9 44 158-207 110-153 (327)
147 1pjr_A PCRA; DNA repair, DNA r 93.6 0.078 2.7E-06 58.9 6.6 62 37-100 10-78 (724)
148 2r2a_A Uncharacterized protein 93.6 0.038 1.3E-06 50.9 3.4 17 55-71 7-23 (199)
149 2j9r_A Thymidine kinase; TK1, 93.5 0.12 4.1E-06 48.0 6.5 37 53-89 28-67 (214)
150 1njg_A DNA polymerase III subu 93.4 0.65 2.2E-05 42.7 11.7 16 55-70 47-62 (250)
151 2qby_A CDC6 homolog 1, cell di 93.3 0.33 1.1E-05 48.7 10.2 18 53-70 45-62 (386)
152 3oiy_A Reverse gyrase helicase 93.2 0.18 6.1E-06 51.6 8.1 78 257-334 63-147 (414)
153 3u4q_A ATP-dependent helicase/ 93.2 0.11 3.9E-06 61.1 7.3 61 38-100 10-79 (1232)
154 1g5t_A COB(I)alamin adenosyltr 92.9 0.22 7.5E-06 45.5 7.2 133 54-208 29-167 (196)
155 2dr3_A UPF0273 protein PH0284; 92.9 1.1 3.9E-05 41.6 12.7 51 52-103 22-75 (247)
156 4b4t_J 26S protease regulatory 92.9 0.45 1.5E-05 48.5 10.2 57 13-72 143-201 (405)
157 1xx6_A Thymidine kinase; NESG, 92.8 0.083 2.8E-06 48.3 4.2 36 53-88 8-46 (191)
158 3d8b_A Fidgetin-like protein 1 92.7 0.31 1.1E-05 49.0 8.9 32 53-84 117-148 (357)
159 2qgz_A Helicase loader, putati 92.7 0.14 4.9E-06 50.5 6.2 18 53-70 152-169 (308)
160 1sxj_C Activator 1 40 kDa subu 92.7 0.67 2.3E-05 46.0 11.2 41 159-205 111-151 (340)
161 2z4s_A Chromosomal replication 92.4 0.31 1.1E-05 50.6 8.6 18 54-71 131-148 (440)
162 3pfi_A Holliday junction ATP-d 92.3 0.56 1.9E-05 46.4 10.1 19 54-72 56-74 (338)
163 1jr3_A DNA polymerase III subu 92.3 1.5 5.1E-05 43.7 13.3 43 157-205 118-160 (373)
164 1xp8_A RECA protein, recombina 92.3 1.1 3.9E-05 45.0 12.3 86 1-87 4-111 (366)
165 2cvh_A DNA repair and recombin 92.3 0.18 6.3E-06 46.3 6.0 32 53-85 20-52 (220)
166 3kl4_A SRP54, signal recogniti 92.2 1.7 5.6E-05 44.9 13.5 122 55-207 99-227 (433)
167 4b4t_H 26S protease regulatory 91.9 0.64 2.2E-05 48.2 10.0 57 13-72 204-262 (467)
168 3bgw_A DNAB-like replicative h 91.9 1.3 4.4E-05 45.9 12.5 151 46-202 186-359 (444)
169 3t15_A Ribulose bisphosphate c 91.9 0.23 7.8E-06 48.5 6.4 19 54-72 37-55 (293)
170 1w5s_A Origin recognition comp 91.7 1.2 4.1E-05 45.0 12.0 17 54-70 51-69 (412)
171 4b4t_L 26S protease subunit RP 91.6 0.42 1.4E-05 49.4 8.2 57 13-72 176-234 (437)
172 1lv7_A FTSH; alpha/beta domain 91.5 0.86 2.9E-05 43.1 10.0 19 53-71 45-63 (257)
173 4ddu_A Reverse gyrase; topoiso 91.5 0.35 1.2E-05 56.2 8.4 78 257-334 120-204 (1104)
174 3hu3_A Transitional endoplasmi 91.5 0.35 1.2E-05 50.9 7.7 29 54-82 239-267 (489)
175 2orv_A Thymidine kinase; TP4A 91.2 0.4 1.4E-05 45.0 6.9 37 53-89 19-58 (234)
176 3dm5_A SRP54, signal recogniti 91.1 2.5 8.6E-05 43.6 13.5 51 55-105 102-158 (443)
177 3cf2_A TER ATPase, transitiona 90.6 0.42 1.5E-05 53.2 7.6 76 13-90 472-547 (806)
178 2eyq_A TRCF, transcription-rep 90.6 1.3 4.3E-05 51.8 11.9 76 257-332 651-731 (1151)
179 2w0m_A SSO2452; RECA, SSPF, un 90.5 2.6 8.8E-05 38.6 12.1 34 52-85 22-58 (235)
180 1vma_A Cell division protein F 90.1 3.8 0.00013 40.1 13.3 32 54-85 105-139 (306)
181 1sxj_E Activator 1 40 kDa subu 90.0 2.3 8E-05 42.0 12.1 51 7-71 3-54 (354)
182 2z43_A DNA repair and recombin 89.9 1 3.5E-05 44.5 9.1 43 46-88 95-151 (324)
183 1u94_A RECA protein, recombina 89.8 1.9 6.6E-05 43.2 11.1 63 24-86 15-99 (356)
184 1v5w_A DMC1, meiotic recombina 89.8 0.55 1.9E-05 46.9 7.1 43 46-88 110-166 (343)
185 1n0w_A DNA repair protein RAD5 89.7 2.3 7.9E-05 39.3 11.1 34 52-85 23-65 (243)
186 2qen_A Walker-type ATPase; unk 89.6 4.4 0.00015 39.6 13.6 18 53-70 31-48 (350)
187 4b4t_I 26S protease regulatory 89.6 0.55 1.9E-05 48.2 6.9 58 12-72 176-235 (437)
188 1cr0_A DNA primase/helicase; R 89.5 1.4 5E-05 42.5 9.8 34 52-85 34-71 (296)
189 1nlf_A Regulatory protein REPA 89.5 2.9 0.0001 40.0 11.9 21 50-70 27-47 (279)
190 3e2i_A Thymidine kinase; Zn-bi 89.2 0.65 2.2E-05 43.0 6.5 38 52-89 27-67 (219)
191 2rb4_A ATP-dependent RNA helic 88.9 1.3 4.3E-05 39.3 8.2 79 57-138 12-92 (175)
192 2hjv_A ATP-dependent RNA helic 88.8 1.4 4.7E-05 38.6 8.2 59 77-137 34-92 (163)
193 1q57_A DNA primase/helicase; d 88.7 0.96 3.3E-05 47.7 8.3 34 53-86 242-279 (503)
194 2fna_A Conserved hypothetical 88.7 5.5 0.00019 39.0 13.6 29 41-70 19-47 (357)
195 1ixz_A ATP-dependent metallopr 88.6 1.2 4.2E-05 41.9 8.3 18 54-71 50-67 (254)
196 2i1q_A DNA repair and recombin 88.5 1.4 4.8E-05 43.3 9.0 26 45-70 85-115 (322)
197 3ber_A Probable ATP-dependent 88.4 2.4 8.1E-05 39.9 10.2 72 257-332 110-192 (249)
198 2p6n_A ATP-dependent RNA helic 88.4 2.9 0.0001 37.6 10.4 72 63-137 39-111 (191)
199 1r6b_X CLPA protein; AAA+, N-t 88.3 1.9 6.4E-05 47.9 10.8 18 53-70 207-224 (758)
200 3hws_A ATP-dependent CLP prote 88.0 1.3 4.3E-05 44.5 8.4 33 52-84 50-82 (363)
201 1t6n_A Probable ATP-dependent 87.9 1.9 6.5E-05 39.4 9.0 71 259-332 83-164 (220)
202 3eaq_A Heat resistant RNA depe 87.4 5.3 0.00018 36.5 11.7 61 76-138 29-89 (212)
203 1oyw_A RECQ helicase, ATP-depe 87.3 1.2 4.2E-05 47.2 8.1 74 258-331 65-144 (523)
204 1t5i_A C_terminal domain of A 87.3 1.9 6.4E-05 38.1 8.2 60 77-138 30-89 (172)
205 3cmu_A Protein RECA, recombina 87.2 1 3.4E-05 55.0 8.0 45 46-90 1414-1467(2050)
206 3cf2_A TER ATPase, transitiona 87.2 3.7 0.00013 45.7 12.1 19 54-72 239-257 (806)
207 2ce7_A Cell division protein F 87.1 2.1 7.2E-05 44.7 9.5 18 54-71 50-67 (476)
208 1fuk_A Eukaryotic initiation f 87.0 1.6 5.5E-05 38.1 7.6 59 77-137 29-87 (165)
209 2zts_A Putative uncharacterize 87.0 0.1 3.5E-06 49.1 -0.5 34 53-86 30-67 (251)
210 1w4r_A Thymidine kinase; type 86.9 1.1 3.9E-05 40.7 6.5 34 53-87 20-57 (195)
211 1qvr_A CLPB protein; coiled co 86.7 1.7 5.7E-05 49.1 9.2 18 54-71 192-209 (854)
212 2v1x_A ATP-dependent DNA helic 86.4 1.1 3.9E-05 48.2 7.3 59 258-316 84-144 (591)
213 2zr9_A Protein RECA, recombina 86.3 4.7 0.00016 40.2 11.4 42 45-86 47-97 (349)
214 2oxc_A Probable ATP-dependent 85.5 1.7 5.8E-05 40.2 7.2 55 257-316 91-150 (230)
215 2jgn_A DBX, DDX3, ATP-dependen 85.4 1.7 5.8E-05 39.0 6.9 73 62-137 28-103 (185)
216 3fe2_A Probable ATP-dependent 85.4 2.8 9.6E-05 39.0 8.8 70 258-331 102-181 (242)
217 3n70_A Transport activator; si 85.3 0.73 2.5E-05 39.5 4.2 21 52-72 23-43 (145)
218 2dhr_A FTSH; AAA+ protein, hex 84.5 7.1 0.00024 40.9 12.1 19 54-72 65-83 (499)
219 2vhj_A Ntpase P4, P4; non- hyd 84.1 1.6 5.6E-05 43.0 6.5 19 52-70 122-140 (331)
220 3b85_A Phosphate starvation-in 82.5 1.3 4.5E-05 40.7 4.9 32 39-70 8-39 (208)
221 1vec_A ATP-dependent RNA helic 82.3 3.7 0.00013 36.9 8.0 55 258-316 71-130 (206)
222 1e9r_A Conjugal transfer prote 82.2 0.76 2.6E-05 47.4 3.5 41 52-92 52-95 (437)
223 2pl3_A Probable ATP-dependent 82.1 2.9 9.8E-05 38.7 7.3 54 258-316 97-154 (236)
224 2gxq_A Heat resistant RNA depe 82.1 4 0.00014 36.6 8.1 56 257-316 71-128 (207)
225 3io5_A Recombination and repai 82.0 1.5 5.3E-05 43.1 5.3 46 55-103 30-80 (333)
226 3hr8_A Protein RECA; alpha and 81.9 2.1 7.3E-05 42.8 6.5 45 45-89 47-100 (356)
227 3iuy_A Probable ATP-dependent 81.7 3.3 0.00011 38.1 7.5 71 257-331 93-172 (228)
228 2px0_A Flagellar biosynthesis 81.7 6.3 0.00021 38.2 9.7 18 53-70 105-122 (296)
229 1ypw_A Transitional endoplasmi 81.6 4.6 0.00016 45.2 9.8 22 53-74 238-259 (806)
230 3i32_A Heat resistant RNA depe 81.4 4.9 0.00017 39.1 8.9 61 76-138 26-86 (300)
231 3bor_A Human initiation factor 80.8 2.9 9.8E-05 38.9 6.7 57 257-316 97-157 (237)
232 3m6a_A ATP-dependent protease 80.8 2 7E-05 45.7 6.3 20 53-72 108-127 (543)
233 2yhs_A FTSY, cell division pro 80.6 14 0.00048 38.6 12.4 30 55-84 295-327 (503)
234 1sky_E F1-ATPase, F1-ATP synth 80.2 15 0.00051 38.1 12.3 25 46-70 141-168 (473)
235 2oap_1 GSPE-2, type II secreti 79.4 2.2 7.4E-05 45.1 5.9 31 39-69 245-276 (511)
236 3cmw_A Protein RECA, recombina 79.3 6.9 0.00024 47.1 10.6 96 46-171 719-823 (1706)
237 2r44_A Uncharacterized protein 79.2 2.2 7.7E-05 41.8 5.6 24 48-71 41-64 (331)
238 3e70_C DPA, signal recognition 79.1 11 0.00039 37.0 10.8 47 159-209 212-259 (328)
239 2x8a_A Nuclear valosin-contain 78.7 1.1 3.8E-05 43.1 3.1 56 13-72 5-63 (274)
240 3ly5_A ATP-dependent RNA helic 78.6 11 0.00037 35.5 10.2 71 258-332 126-207 (262)
241 2i4i_A ATP-dependent RNA helic 78.1 7.5 0.00026 39.0 9.4 60 77-138 275-334 (417)
242 1um8_A ATP-dependent CLP prote 78.1 6.8 0.00023 39.1 9.0 22 53-74 72-93 (376)
243 1ofh_A ATP-dependent HSL prote 77.7 4.2 0.00014 39.1 7.0 19 53-71 50-68 (310)
244 3lda_A DNA repair protein RAD5 77.7 10 0.00035 38.4 10.2 41 46-86 166-220 (400)
245 3tb6_A Arabinose metabolism tr 77.6 46 0.0016 31.0 15.5 181 89-284 32-226 (298)
246 1qvr_A CLPB protein; coiled co 77.4 2.4 8.2E-05 47.8 5.9 17 55-71 590-606 (854)
247 1ls1_A Signal recognition part 77.1 44 0.0015 32.0 14.2 33 53-85 98-133 (295)
248 2p5t_B PEZT; postsegregational 76.9 19 0.00065 33.6 11.3 18 55-72 34-51 (253)
249 1qde_A EIF4A, translation init 76.6 2.8 9.4E-05 38.4 5.1 55 257-316 81-139 (224)
250 2d7d_A Uvrabc system protein B 76.5 36 0.0012 36.9 14.7 82 77-170 444-525 (661)
251 2xxa_A Signal recognition part 76.0 40 0.0014 34.4 14.2 42 55-96 102-149 (433)
252 1p9r_A General secretion pathw 76.0 2.3 8E-05 43.6 4.8 31 39-69 151-183 (418)
253 3cmu_A Protein RECA, recombina 75.7 15 0.0005 45.1 12.0 97 45-171 369-474 (2050)
254 2chq_A Replication factor C sm 75.4 3.1 0.00011 40.2 5.4 52 5-70 4-55 (319)
255 3nbx_X ATPase RAVA; AAA+ ATPas 74.0 3.1 0.0001 43.8 5.2 27 46-72 34-60 (500)
256 2v9p_A Replication protein E1; 74.0 1.9 6.4E-05 42.3 3.3 42 44-86 113-159 (305)
257 3hjh_A Transcription-repair-co 73.9 4.7 0.00016 42.1 6.5 50 52-101 13-62 (483)
258 3fht_A ATP-dependent RNA helic 73.8 8 0.00027 38.7 8.2 60 77-138 265-324 (412)
259 4a2p_A RIG-I, retinoic acid in 73.8 5.4 0.00018 41.9 7.1 71 258-332 55-136 (556)
260 2r8r_A Sensor protein; KDPD, P 73.8 24 0.00083 32.6 10.7 19 53-71 5-24 (228)
261 3gk5_A Uncharacterized rhodane 73.6 2.5 8.6E-05 34.1 3.5 37 257-293 54-90 (108)
262 1hv8_A Putative ATP-dependent 73.6 8.9 0.0003 37.5 8.4 60 77-138 237-296 (367)
263 3a8t_A Adenylate isopentenyltr 73.5 2.1 7.1E-05 42.5 3.5 18 54-71 41-58 (339)
264 3foj_A Uncharacterized protein 73.3 2.5 8.5E-05 33.5 3.4 37 257-293 55-91 (100)
265 1wrb_A DJVLGB; RNA helicase, D 73.3 7.8 0.00027 36.1 7.5 55 258-316 100-158 (253)
266 1xti_A Probable ATP-dependent 73.0 21 0.00072 35.2 11.1 60 77-138 249-308 (391)
267 4b4t_M 26S protease regulatory 72.9 2.2 7.6E-05 43.9 3.7 68 13-84 176-246 (434)
268 1kgd_A CASK, peripheral plasma 72.9 2.1 7.2E-05 38.0 3.1 20 52-71 4-23 (180)
269 1s2m_A Putative ATP-dependent 72.8 8.8 0.0003 38.3 8.2 60 77-138 257-316 (400)
270 1wp9_A ATP-dependent RNA helic 72.7 10 0.00035 38.5 8.8 71 257-332 51-131 (494)
271 3eme_A Rhodanese-like domain p 72.6 2.5 8.6E-05 33.6 3.3 36 257-292 55-90 (103)
272 3pey_A ATP-dependent RNA helic 72.6 8.9 0.00031 37.9 8.2 59 78-138 243-301 (395)
273 4fcw_A Chaperone protein CLPB; 72.2 1.8 6.1E-05 42.0 2.7 18 54-71 48-65 (311)
274 2gza_A Type IV secretion syste 71.9 2.4 8.2E-05 42.5 3.6 21 50-70 172-192 (361)
275 1gvn_B Zeta; postsegregational 71.9 17 0.00058 34.9 9.7 32 55-86 35-66 (287)
276 1lvg_A Guanylate kinase, GMP k 71.8 2.1 7.3E-05 38.7 3.0 19 52-70 3-21 (198)
277 3exa_A TRNA delta(2)-isopenten 71.2 2.7 9.3E-05 41.2 3.7 18 54-71 4-21 (322)
278 2bjv_A PSP operon transcriptio 71.0 3.1 0.00011 39.3 4.0 21 52-72 28-48 (265)
279 3foz_A TRNA delta(2)-isopenten 70.5 2.8 9.5E-05 41.1 3.6 17 55-71 12-28 (316)
280 3vaa_A Shikimate kinase, SK; s 70.3 2.5 8.7E-05 38.1 3.1 21 52-72 24-44 (199)
281 2j0s_A ATP-dependent RNA helic 70.1 10 0.00036 37.9 8.1 60 77-138 275-334 (410)
282 2ffh_A Protein (FFH); SRP54, s 69.9 39 0.0013 34.5 12.2 44 54-97 99-147 (425)
283 4b4t_K 26S protease regulatory 69.8 2.9 0.0001 42.9 3.7 57 13-72 167-225 (428)
284 2eyu_A Twitching motility prot 69.7 2.1 7.3E-05 40.8 2.5 20 51-70 23-42 (261)
285 3iwh_A Rhodanese-like domain p 69.5 3.3 0.00011 33.3 3.3 36 257-292 55-90 (103)
286 3tau_A Guanylate kinase, GMP k 69.3 2.7 9.3E-05 38.3 3.1 20 52-71 7-26 (208)
287 1tue_A Replication protein E1; 68.9 5.1 0.00017 36.7 4.7 44 24-70 28-75 (212)
288 2pt7_A CAG-ALFA; ATPase, prote 68.9 2.6 8.9E-05 41.7 3.1 21 50-70 168-188 (330)
289 2ehv_A Hypothetical protein PH 68.8 3.3 0.00011 38.4 3.7 20 52-71 29-48 (251)
290 1wv9_A Rhodanese homolog TT165 68.5 3.5 0.00012 32.2 3.2 35 259-293 54-88 (94)
291 3nwn_A Kinesin-like protein KI 68.5 3.4 0.00011 41.4 3.8 25 46-70 96-122 (359)
292 3tr0_A Guanylate kinase, GMP k 68.2 2.7 9.3E-05 37.8 2.8 20 52-71 6-25 (205)
293 2j37_W Signal recognition part 68.1 52 0.0018 34.3 13.0 42 55-96 103-149 (504)
294 1bg2_A Kinesin; motor protein, 67.8 3.8 0.00013 40.4 3.9 25 46-70 69-95 (325)
295 3tbk_A RIG-I helicase domain; 67.8 5.2 0.00018 41.9 5.4 71 258-332 52-133 (555)
296 1u0j_A DNA replication protein 67.3 4.8 0.00016 38.5 4.4 45 23-71 72-122 (267)
297 4ag6_A VIRB4 ATPase, type IV s 67.3 5 0.00017 40.5 4.9 38 52-89 34-74 (392)
298 4a2q_A RIG-I, retinoic acid in 67.2 8.5 0.00029 42.9 7.2 71 258-332 296-377 (797)
299 3trf_A Shikimate kinase, SK; a 67.1 3.1 0.00011 36.7 3.0 20 53-72 5-24 (185)
300 3uk6_A RUVB-like 2; hexameric 67.0 5.1 0.00017 39.7 4.8 18 54-71 71-88 (368)
301 1fuu_A Yeast initiation factor 66.6 16 0.00054 36.2 8.5 71 257-332 88-168 (394)
302 3cmw_A Protein RECA, recombina 66.6 8.2 0.00028 46.5 7.1 97 46-172 1418-1523(1706)
303 1tf7_A KAIC; homohexamer, hexa 66.2 30 0.001 36.3 10.9 36 52-87 280-318 (525)
304 3h75_A Periplasmic sugar-bindi 66.1 97 0.0033 29.8 17.6 178 93-284 25-230 (350)
305 3dc4_A Kinesin-like protein NO 65.7 4 0.00014 40.6 3.6 24 47-70 87-112 (344)
306 2vvg_A Kinesin-2; motor protei 65.7 4.4 0.00015 40.4 3.9 24 47-70 82-107 (350)
307 2y65_A Kinesin, kinesin heavy 65.6 4.4 0.00015 40.7 3.9 25 46-70 76-102 (365)
308 1kag_A SKI, shikimate kinase I 65.6 5.9 0.0002 34.3 4.5 20 53-72 4-23 (173)
309 1qhx_A CPT, protein (chloramph 65.6 5.3 0.00018 34.8 4.2 20 53-72 3-22 (178)
310 3g5j_A Putative ATP/GTP bindin 65.3 5 0.00017 33.3 3.7 36 259-294 90-126 (134)
311 2ze6_A Isopentenyl transferase 65.2 3.4 0.00012 39.0 3.0 15 56-70 4-18 (253)
312 1z6g_A Guanylate kinase; struc 65.2 4.1 0.00014 37.4 3.5 20 51-70 21-40 (218)
313 3b6u_A Kinesin-like protein KI 65.2 4.3 0.00015 40.8 3.8 25 46-70 93-119 (372)
314 3crm_A TRNA delta(2)-isopenten 65.2 4.1 0.00014 40.1 3.6 17 55-71 7-23 (323)
315 4a14_A Kinesin, kinesin-like p 65.1 4.6 0.00016 40.2 3.9 24 47-70 76-101 (344)
316 2j41_A Guanylate kinase; GMP, 65.0 3.4 0.00012 37.1 2.8 21 51-71 4-24 (207)
317 3lw7_A Adenylate kinase relate 64.9 3 0.0001 36.1 2.3 18 55-72 3-20 (179)
318 1goj_A Kinesin, kinesin heavy 64.9 4.3 0.00015 40.6 3.7 24 47-70 73-98 (355)
319 2qmh_A HPR kinase/phosphorylas 64.8 2.6 8.8E-05 38.5 1.9 17 53-69 34-50 (205)
320 3gbj_A KIF13B protein; kinesin 64.8 4.4 0.00015 40.4 3.8 25 46-70 84-110 (354)
321 3lre_A Kinesin-like protein KI 64.7 4.4 0.00015 40.5 3.8 25 46-70 97-123 (355)
322 2h58_A Kinesin-like protein KI 64.7 4.7 0.00016 39.8 3.9 26 45-70 71-98 (330)
323 2db3_A ATP-dependent RNA helic 64.4 15 0.00053 37.4 8.0 59 78-138 300-358 (434)
324 1c4o_A DNA nucleotide excision 64.4 23 0.00079 38.4 9.8 82 76-169 437-518 (664)
325 3ney_A 55 kDa erythrocyte memb 64.4 4 0.00014 37.1 3.1 20 52-71 18-37 (197)
326 1v8k_A Kinesin-like protein KI 64.3 4.5 0.00015 41.2 3.7 25 46-70 146-172 (410)
327 3a00_A Guanylate kinase, GMP k 64.2 4.3 0.00015 36.1 3.3 18 54-71 2-19 (186)
328 3l49_A ABC sugar (ribose) tran 64.1 91 0.0031 28.8 14.2 41 243-283 173-215 (291)
329 3hix_A ALR3790 protein; rhodan 64.1 5 0.00017 32.1 3.4 37 257-293 51-88 (106)
330 2zfi_A Kinesin-like protein KI 64.1 4.8 0.00017 40.4 3.9 25 46-70 81-107 (366)
331 1t5c_A CENP-E protein, centrom 64.0 4.9 0.00017 40.0 3.9 25 46-70 69-95 (349)
332 3iij_A Coilin-interacting nucl 63.8 4.7 0.00016 35.4 3.5 20 52-71 10-29 (180)
333 3fmo_B ATP-dependent RNA helic 63.8 6.6 0.00023 38.0 4.8 68 258-332 162-241 (300)
334 2nr8_A Kinesin-like protein KI 63.7 4.7 0.00016 40.3 3.8 25 46-70 95-121 (358)
335 4etp_A Kinesin-like protein KA 63.7 5.3 0.00018 40.7 4.2 26 46-71 132-159 (403)
336 4akg_A Glutathione S-transfera 63.6 9 0.00031 48.4 6.9 50 23-74 891-944 (2695)
337 1zp6_A Hypothetical protein AT 63.6 3.3 0.00011 36.8 2.4 20 52-71 8-27 (191)
338 2yjt_D ATP-dependent RNA helic 67.0 1.5 5.2E-05 38.5 0.0 58 78-137 30-87 (170)
339 3dkp_A Probable ATP-dependent 63.0 2.7 9.3E-05 39.1 1.8 72 258-332 98-181 (245)
340 1g41_A Heat shock protein HSLU 63.0 7.6 0.00026 40.0 5.2 20 53-72 50-69 (444)
341 1hqc_A RUVB; extended AAA-ATPa 62.8 6.3 0.00022 38.2 4.5 18 54-71 39-56 (324)
342 1x88_A Kinesin-like protein KI 62.6 4.6 0.00016 40.4 3.4 25 46-70 80-106 (359)
343 1znw_A Guanylate kinase, GMP k 62.5 4.4 0.00015 36.7 3.1 23 49-71 16-38 (207)
344 3qk7_A Transcriptional regulat 62.5 1E+02 0.0035 28.8 13.9 179 89-284 27-212 (294)
345 2heh_A KIF2C protein; kinesin, 62.4 4.9 0.00017 40.6 3.6 25 46-70 126-152 (387)
346 2qor_A Guanylate kinase; phosp 62.3 5.1 0.00017 36.2 3.5 21 51-71 10-30 (204)
347 2fsx_A RV0390, COG0607: rhodan 62.2 7.9 0.00027 33.0 4.5 37 257-293 79-116 (148)
348 2l82_A Designed protein OR32; 62.2 31 0.0011 27.5 7.4 51 261-311 5-55 (162)
349 2wbe_C Bipolar kinesin KRP-130 62.2 5 0.00017 40.4 3.6 24 47-70 93-118 (373)
350 3d3q_A TRNA delta(2)-isopenten 62.1 5 0.00017 39.8 3.5 16 55-70 9-24 (340)
351 1ojl_A Transcriptional regulat 61.5 3.4 0.00012 40.2 2.3 21 52-72 24-44 (304)
352 3u06_A Protein claret segregat 61.5 5.7 0.00019 40.5 3.9 26 45-70 129-156 (412)
353 2r62_A Cell division protease 61.5 3.1 0.0001 39.4 1.8 19 53-71 44-62 (268)
354 1gku_B Reverse gyrase, TOP-RG; 61.3 8 0.00027 44.6 5.6 74 257-332 98-181 (1054)
355 2jtq_A Phage shock protein E; 61.1 13 0.00045 28.0 5.2 37 256-293 39-76 (85)
356 3nhv_A BH2092 protein; alpha-b 60.9 5.7 0.00019 33.9 3.3 37 257-293 71-109 (144)
357 3flh_A Uncharacterized protein 60.9 4.1 0.00014 33.7 2.4 37 257-293 70-108 (124)
358 1y63_A LMAJ004144AAA protein; 60.8 4.9 0.00017 35.6 3.0 21 52-72 9-29 (184)
359 3i5x_A ATP-dependent RNA helic 60.6 30 0.001 36.4 9.7 60 77-138 338-400 (563)
360 4gp7_A Metallophosphoesterase; 60.6 3.4 0.00012 36.3 1.9 21 52-72 8-28 (171)
361 2ewv_A Twitching motility prot 60.4 3.9 0.00013 41.2 2.5 18 52-69 135-152 (372)
362 3sqw_A ATP-dependent RNA helic 60.3 19 0.00066 38.2 8.1 60 77-138 287-349 (579)
363 1q0u_A Bstdead; DEAD protein, 60.2 5.2 0.00018 36.4 3.1 55 258-316 72-134 (219)
364 2bdt_A BH3686; alpha-beta prot 60.1 7.6 0.00026 34.3 4.2 18 55-72 4-21 (189)
365 2owm_A Nckin3-434, related to 59.9 6.2 0.00021 40.6 3.9 24 47-70 129-154 (443)
366 1ex7_A Guanylate kinase; subst 59.8 8.7 0.0003 34.4 4.5 17 54-70 2-18 (186)
367 3kb2_A SPBC2 prophage-derived 59.7 5.1 0.00017 34.6 2.9 17 55-71 3-19 (173)
368 3nwj_A ATSK2; P loop, shikimat 59.6 6.3 0.00022 37.2 3.7 22 52-73 47-68 (250)
369 2k0z_A Uncharacterized protein 59.6 9.2 0.00032 30.7 4.3 38 256-293 54-91 (110)
370 3cob_A Kinesin heavy chain-lik 59.6 5.3 0.00018 40.1 3.3 25 46-70 71-97 (369)
371 3jvv_A Twitching mobility prot 59.5 4.7 0.00016 40.3 2.9 18 52-69 122-139 (356)
372 1qxn_A SUD, sulfide dehydrogen 59.3 6.2 0.00021 33.3 3.3 36 257-292 81-117 (137)
373 1ry6_A Internal kinesin; kines 59.2 6.2 0.00021 39.5 3.7 23 49-71 78-103 (360)
374 4eun_A Thermoresistant glucoki 59.0 5.6 0.00019 35.8 3.1 20 52-71 28-47 (200)
375 3t0q_A AGR253WP; kinesin, alph 59.0 5.1 0.00017 39.9 3.0 26 46-71 77-104 (349)
376 1ly1_A Polynucleotide kinase; 59.0 5.5 0.00019 34.7 3.0 17 55-71 4-20 (181)
377 1f9v_A Kinesin-like protein KA 58.9 5.1 0.00017 39.9 3.0 25 47-71 77-103 (347)
378 1kht_A Adenylate kinase; phosp 58.6 5.6 0.00019 35.0 3.0 19 53-71 3-21 (192)
379 2fsf_A Preprotein translocase 58.2 33 0.0011 38.1 9.5 56 256-317 113-172 (853)
380 3cm0_A Adenylate kinase; ATP-b 58.1 4.2 0.00014 35.8 2.1 21 52-72 3-23 (186)
381 3eiq_A Eukaryotic initiation f 57.9 11 0.00038 37.6 5.5 59 78-138 280-338 (414)
382 1gmx_A GLPE protein; transfera 57.9 5.8 0.0002 31.7 2.7 37 257-293 57-94 (108)
383 3bfn_A Kinesin-like protein KI 57.6 5.5 0.00019 40.2 3.0 30 41-70 77-116 (388)
384 1s96_A Guanylate kinase, GMP k 57.6 6.1 0.00021 36.5 3.1 22 50-71 13-34 (219)
385 1j8m_F SRP54, signal recogniti 57.5 68 0.0023 30.8 10.8 41 55-95 100-145 (297)
386 3egc_A Putative ribose operon 57.5 1.2E+02 0.0041 28.1 15.8 177 89-284 25-211 (291)
387 1tq1_A AT5G66040, senescence-a 57.5 6.2 0.00021 32.8 2.9 37 257-293 81-118 (129)
388 1iy2_A ATP-dependent metallopr 57.4 8.8 0.0003 36.5 4.4 18 54-71 74-91 (278)
389 1f2t_A RAD50 ABC-ATPase; DNA d 57.4 5 0.00017 34.5 2.3 15 55-69 25-39 (149)
390 1tf5_A Preprotein translocase 57.4 28 0.00097 38.7 8.8 72 255-332 121-209 (844)
391 2c9o_A RUVB-like 1; hexameric 57.2 5.5 0.00019 41.2 3.0 18 54-71 64-81 (456)
392 3eph_A TRNA isopentenyltransfe 56.9 5.2 0.00018 40.7 2.6 15 56-70 5-19 (409)
393 1knq_A Gluconate kinase; ALFA/ 56.9 5.3 0.00018 34.9 2.5 19 53-71 8-26 (175)
394 3vkg_A Dynein heavy chain, cyt 56.8 13 0.00043 47.8 6.5 61 24-86 875-945 (3245)
395 3tqc_A Pantothenate kinase; bi 56.8 14 0.00048 36.2 5.8 15 56-70 95-109 (321)
396 3dbi_A Sugar-binding transcrip 56.6 1.4E+02 0.0047 28.5 18.0 178 89-284 80-267 (338)
397 3d1p_A Putative thiosulfate su 56.1 7.5 0.00026 32.6 3.3 37 257-293 90-127 (139)
398 1in4_A RUVB, holliday junction 55.9 6.5 0.00022 38.7 3.2 19 54-72 52-70 (334)
399 1c9k_A COBU, adenosylcobinamid 55.4 8.9 0.00031 34.2 3.7 32 56-88 2-33 (180)
400 2hhg_A Hypothetical protein RP 54.9 6.8 0.00023 32.9 2.8 37 257-293 85-122 (139)
401 3dmq_A RNA polymerase-associat 54.9 28 0.00097 39.6 8.7 61 77-137 502-563 (968)
402 3qf7_A RAD50; ABC-ATPase, ATPa 54.7 5.3 0.00018 40.0 2.3 16 55-70 25-40 (365)
403 3lnc_A Guanylate kinase, GMP k 54.6 5 0.00017 37.0 2.0 19 52-70 26-44 (231)
404 3uie_A Adenylyl-sulfate kinase 54.4 6.2 0.00021 35.5 2.6 20 52-71 24-43 (200)
405 2rep_A Kinesin-like protein KI 54.4 6.7 0.00023 39.5 3.0 24 47-70 108-133 (376)
406 3k1j_A LON protease, ATP-depen 54.0 11 0.00037 40.5 4.8 25 48-72 55-79 (604)
407 3t61_A Gluconokinase; PSI-biol 53.2 7.4 0.00025 34.9 2.9 18 54-71 19-36 (202)
408 1via_A Shikimate kinase; struc 53.2 8.5 0.00029 33.5 3.2 19 54-72 5-23 (175)
409 1nkt_A Preprotein translocase 52.9 38 0.0013 37.9 8.9 73 254-332 148-237 (922)
410 1cke_A CK, MSSA, protein (cyti 52.5 7.8 0.00027 35.3 3.0 19 54-72 6-24 (227)
411 2c95_A Adenylate kinase 1; tra 52.5 8 0.00027 34.2 3.0 21 52-72 8-28 (196)
412 3kta_A Chromosome segregation 52.5 8.9 0.00031 33.6 3.3 17 55-71 28-44 (182)
413 3o74_A Fructose transport syst 52.4 1.4E+02 0.0047 27.2 19.7 178 90-283 20-204 (272)
414 1zd8_A GTP:AMP phosphotransfer 52.4 7.5 0.00026 35.6 2.9 21 52-72 6-26 (227)
415 1g8p_A Magnesium-chelatase 38 52.3 5.3 0.00018 39.2 1.9 19 53-71 45-63 (350)
416 3mwy_W Chromo domain-containin 52.3 1.2E+02 0.0041 33.5 13.2 130 77-221 571-704 (800)
417 2iks_A DNA-binding transcripti 52.2 1.5E+02 0.005 27.5 14.1 177 90-283 38-221 (293)
418 1vee_A Proline-rich protein fa 51.9 9.8 0.00034 31.8 3.3 37 257-293 73-110 (134)
419 3a4m_A L-seryl-tRNA(SEC) kinas 51.6 14 0.00047 34.8 4.6 18 54-71 5-22 (260)
420 3m9w_A D-xylose-binding peripl 51.5 1.6E+02 0.0054 27.6 16.2 182 89-284 19-213 (313)
421 3zvl_A Bifunctional polynucleo 51.4 40 0.0014 34.2 8.4 17 55-71 260-276 (416)
422 1ye8_A Protein THEP1, hypothet 51.3 8.8 0.0003 34.0 3.0 16 55-70 2-17 (178)
423 3c8u_A Fructokinase; YP_612366 51.3 6.7 0.00023 35.5 2.3 18 53-70 22-39 (208)
424 1zuh_A Shikimate kinase; alpha 51.3 8.5 0.00029 33.2 2.9 20 54-73 8-27 (168)
425 2qt1_A Nicotinamide riboside k 51.2 12 0.00041 33.6 4.0 20 53-72 21-40 (207)
426 2ykg_A Probable ATP-dependent 51.2 16 0.00055 39.7 5.7 70 259-332 62-142 (696)
427 1tev_A UMP-CMP kinase; ploop, 51.1 8.7 0.0003 33.8 3.0 19 53-71 3-21 (196)
428 3dl0_A Adenylate kinase; phosp 51.0 11 0.00039 34.0 3.8 17 56-72 3-19 (216)
429 3pxg_A Negative regulator of g 50.8 10 0.00035 39.4 3.8 19 53-71 201-219 (468)
430 3fb4_A Adenylate kinase; psych 50.8 8.6 0.00029 34.8 2.9 17 56-72 3-19 (216)
431 2bwj_A Adenylate kinase 5; pho 50.7 11 0.00037 33.4 3.6 21 51-71 10-30 (199)
432 3ilm_A ALR3790 protein; rhodan 50.6 11 0.00037 31.9 3.4 36 257-292 55-91 (141)
433 3b6e_A Interferon-induced heli 50.5 17 0.00059 32.3 5.0 57 257-317 81-141 (216)
434 3f9v_A Minichromosome maintena 50.3 6.5 0.00022 42.3 2.3 17 55-71 329-345 (595)
435 1nij_A Hypothetical protein YJ 50.1 11 0.00036 36.9 3.6 32 56-87 7-39 (318)
436 3auy_A DNA double-strand break 50.1 6.6 0.00022 39.4 2.2 16 55-70 27-42 (371)
437 2i3b_A HCR-ntpase, human cance 50.0 11 0.00037 33.8 3.4 43 157-204 104-146 (189)
438 1e6c_A Shikimate kinase; phosp 49.8 9.6 0.00033 32.9 3.0 19 54-72 3-21 (173)
439 2rhm_A Putative kinase; P-loop 49.6 8.8 0.0003 33.8 2.8 19 53-71 5-23 (193)
440 3asz_A Uridine kinase; cytidin 49.6 7.7 0.00026 35.0 2.4 19 53-71 6-24 (211)
441 2z0m_A 337AA long hypothetical 49.6 24 0.00082 33.8 6.2 70 258-332 56-135 (337)
442 2oca_A DAR protein, ATP-depend 49.6 1E+02 0.0036 31.6 11.6 98 78-192 347-444 (510)
443 2ipc_A Preprotein translocase 49.6 48 0.0016 37.2 8.9 59 253-317 115-177 (997)
444 2ius_A DNA translocase FTSK; n 49.4 9.8 0.00033 40.0 3.4 19 52-70 166-184 (512)
445 2iyv_A Shikimate kinase, SK; t 49.3 11 0.00038 33.0 3.4 19 54-72 3-21 (184)
446 1nks_A Adenylate kinase; therm 48.6 9.4 0.00032 33.5 2.8 38 55-92 3-42 (194)
447 3sr0_A Adenylate kinase; phosp 48.5 10 0.00034 34.6 2.9 16 56-71 3-18 (206)
448 4a74_A DNA repair and recombin 48.4 8 0.00027 35.1 2.3 20 52-71 24-43 (231)
449 1zak_A Adenylate kinase; ATP:A 48.0 11 0.00038 34.3 3.2 20 53-72 5-24 (222)
450 3tif_A Uncharacterized ABC tra 47.9 9.4 0.00032 35.5 2.7 19 52-70 30-48 (235)
451 1qf9_A UMP/CMP kinase, protein 47.8 9.8 0.00034 33.4 2.8 17 55-71 8-24 (194)
452 3umf_A Adenylate kinase; rossm 47.7 10 0.00036 34.8 3.0 19 53-71 29-47 (217)
453 1aky_A Adenylate kinase; ATP:A 47.1 11 0.00039 34.2 3.1 19 53-71 4-22 (220)
454 4e22_A Cytidylate kinase; P-lo 47.0 11 0.00037 35.4 3.1 22 52-73 26-47 (252)
455 3nh6_A ATP-binding cassette SU 46.8 8.9 0.0003 37.4 2.4 20 52-71 79-98 (306)
456 2v54_A DTMP kinase, thymidylat 46.8 12 0.0004 33.4 3.1 20 52-71 3-22 (204)
457 4akg_A Glutathione S-transfera 46.6 14 0.00046 46.9 4.5 20 51-70 1265-1284(2695)
458 2cdn_A Adenylate kinase; phosp 46.3 11 0.00039 33.5 3.0 19 54-72 21-39 (201)
459 1jjv_A Dephospho-COA kinase; P 46.2 11 0.00038 33.7 2.9 17 56-72 5-21 (206)
460 2plr_A DTMP kinase, probable t 46.0 9.3 0.00032 34.2 2.4 20 52-71 3-22 (213)
461 2v6i_A RNA helicase; membrane, 45.9 28 0.00096 35.4 6.2 56 78-139 171-226 (431)
462 2if2_A Dephospho-COA kinase; a 45.9 11 0.00038 33.7 2.8 18 55-72 3-20 (204)
463 4a2w_A RIG-I, retinoic acid in 45.8 13 0.00043 42.4 3.8 71 258-332 296-377 (936)
464 2pez_A Bifunctional 3'-phospho 45.7 11 0.00036 33.0 2.6 20 52-71 4-23 (179)
465 3qks_A DNA double-strand break 45.7 9.5 0.00033 34.5 2.3 16 55-70 25-40 (203)
466 1m7g_A Adenylylsulfate kinase; 45.6 12 0.00041 33.8 3.0 31 40-71 13-43 (211)
467 2jaq_A Deoxyguanosine kinase; 45.5 12 0.0004 33.2 3.0 16 56-71 3-18 (205)
468 2cy8_A D-phgat, D-phenylglycin 45.4 1.2E+02 0.0043 30.3 11.2 39 130-169 201-245 (453)
469 2bbw_A Adenylate kinase 4, AK4 45.4 12 0.0004 34.8 3.0 19 53-71 27-45 (246)
470 1svm_A Large T antigen; AAA+ f 45.4 12 0.00042 37.6 3.3 20 52-71 168-187 (377)
471 1pzn_A RAD51, DNA repair and r 45.4 15 0.00051 36.5 3.9 41 46-86 119-173 (349)
472 1urh_A 3-mercaptopyruvate sulf 45.2 22 0.00076 33.6 5.1 38 257-294 229-267 (280)
473 2pt5_A Shikimate kinase, SK; a 45.0 13 0.00043 32.0 3.0 16 56-71 3-18 (168)
474 1ukz_A Uridylate kinase; trans 44.8 17 0.00059 32.3 4.0 16 55-70 17-32 (203)
475 2cbz_A Multidrug resistance-as 44.7 11 0.00039 35.0 2.7 19 52-70 30-48 (237)
476 1sgw_A Putative ABC transporte 44.6 13 0.00045 34.0 3.2 20 52-71 34-53 (214)
477 1ak2_A Adenylate kinase isoenz 44.6 13 0.00044 34.2 3.1 20 53-72 16-35 (233)
478 3miz_A Putative transcriptiona 44.4 2E+02 0.0067 26.7 12.2 178 89-284 31-222 (301)
479 2yvu_A Probable adenylyl-sulfa 44.3 11 0.00039 33.1 2.6 19 53-71 13-31 (186)
480 3bs4_A Uncharacterized protein 44.3 31 0.0011 32.6 5.7 58 47-105 10-75 (260)
481 2f1r_A Molybdopterin-guanine d 44.2 8.8 0.0003 33.9 1.8 16 55-70 4-19 (171)
482 1uf9_A TT1252 protein; P-loop, 43.7 12 0.00042 33.1 2.8 20 55-74 10-29 (203)
483 4f67_A UPF0176 protein LPG2838 43.6 22 0.00076 33.7 4.6 46 249-294 172-218 (265)
484 1htw_A HI0065; nucleotide-bind 43.1 19 0.00063 31.2 3.7 19 52-70 32-50 (158)
485 3gfo_A Cobalt import ATP-bindi 43.0 12 0.00042 35.7 2.7 20 52-71 33-52 (275)
486 2vli_A Antibiotic resistance p 42.9 11 0.00038 32.8 2.3 20 53-72 5-24 (183)
487 4gl2_A Interferon-induced heli 42.7 21 0.00073 38.7 5.0 58 78-137 400-471 (699)
488 3be4_A Adenylate kinase; malar 42.5 14 0.00047 33.6 2.9 20 53-72 5-24 (217)
489 1e4v_A Adenylate kinase; trans 42.3 13 0.00045 33.6 2.8 16 56-71 3-18 (214)
490 4h1g_A Maltose binding protein 42.3 15 0.00053 40.2 3.8 26 45-70 453-480 (715)
491 1rj9_A FTSY, signal recognitio 42.2 14 0.00047 36.0 3.0 33 53-85 102-137 (304)
492 3pxi_A Negative regulator of g 42.1 21 0.00071 39.4 4.8 19 53-71 201-219 (758)
493 1yks_A Genome polyprotein [con 42.0 16 0.00056 37.3 3.7 57 77-139 176-232 (440)
494 2ff7_A Alpha-hemolysin translo 42.0 13 0.00045 34.8 2.7 20 52-71 34-53 (247)
495 2pze_A Cystic fibrosis transme 41.9 14 0.00046 34.2 2.8 20 52-71 33-52 (229)
496 3pxi_A Negative regulator of g 41.9 20 0.00068 39.6 4.6 17 55-71 523-539 (758)
497 2xb4_A Adenylate kinase; ATP-b 41.8 14 0.00049 33.7 3.0 16 56-71 3-18 (223)
498 2wwf_A Thymidilate kinase, put 41.8 14 0.00048 33.1 2.8 20 52-71 9-28 (212)
499 3b9q_A Chloroplast SRP recepto 41.7 12 0.00042 36.2 2.6 33 53-85 100-135 (302)
500 3qkt_A DNA double-strand break 41.7 11 0.00039 37.1 2.3 16 55-70 25-40 (339)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.9e-74 Score=629.09 Aligned_cols=406 Identities=39% Similarity=0.716 Sum_probs=368.5
Q ss_pred CCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHH
Q 009048 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (545)
Q Consensus 19 ~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l 98 (545)
.+++++.+.+.|++.|||.+|||+|.++|+.++.|+|+++.||||+|||+||++|++...+.+|||+|+++||.||++.+
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l 104 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVL 104 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHH
Confidence 48889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccCh-hhHHHHHhhhccCCccEEEEeccccccccCCCC
Q 009048 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 177 (545)
Q Consensus 99 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~-~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~f 177 (545)
+++|+.+..++++............+.......+++|+|||.+..+ .+...+........+++||||||||+++|||+|
T Consensus 105 ~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~df 184 (591)
T 2v1x_A 105 KQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDF 184 (591)
T ss_dssp HHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTC
T ss_pred HhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccccccc
Confidence 9999999999999988888777777755555789999999998764 566666666667789999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccc-hhhHHHHHHHHHHh-
Q 009048 178 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLCSVLKA- 255 (545)
Q Consensus 178 r~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~-~~~~~~~l~~~l~~- 255 (545)
|+.|..+..++..+|+.|+++||||+++.+..++...+++..+..+..+++++|+.|.+..... ..+.+..|.+++..
T Consensus 185 r~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~ 264 (591)
T 2v1x_A 185 RPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 264 (591)
T ss_dssp CGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998886643 34567778888764
Q ss_pred CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCC
Q 009048 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335 (545)
Q Consensus 256 ~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~ 335 (545)
..+.++||||+|++.++.++..|...|+.+..|||+|++++|..+++.|.+|+++|||||++|+||||+|+|++|||+++
T Consensus 265 ~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~ 344 (591)
T 2v1x_A 265 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM 344 (591)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC
T ss_pred ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhh-cccchHH
Q 009048 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCE-GSGCRRK 414 (545)
Q Consensus 336 p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Crr~ 414 (545)
|.|++.|+||+|||||+|++|.|++||++.|...++.++... ......+..|+.||+ ...|||+
T Consensus 345 p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~Crr~ 409 (591)
T 2v1x_A 345 SKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVME---------------NVGQQKLYEMVSYCQNISKCRRV 409 (591)
T ss_dssp CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTS---------------TTHHHHHHHHHHHHTCSSSCHHH
T ss_pred CCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhh---------------hhhHHHHHHHHHHHhcccccHHH
Confidence 999999999999999999999999999999999888777432 123456789999999 6899999
Q ss_pred HHhhhhCCCCCcCCCCCCCCCCCCh
Q 009048 415 KILESFGEQIPVSLCKNSCDACKHP 439 (545)
Q Consensus 415 ~~l~~f~~~~~~~~c~~~Cd~C~~~ 439 (545)
.+++|||+...+..|+.+||+|..+
T Consensus 410 ~ll~~f~e~~~~~~c~~~Cd~C~~~ 434 (591)
T 2v1x_A 410 LMAQHFDEVWNSEACNKMCDNCCKD 434 (591)
T ss_dssp HHHHHHTCCC---CCCSCBHHHHCC
T ss_pred HHHHHcCCCCCccccCCCCCCCCCC
Confidence 9999999998667898889999876
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.4e-73 Score=615.18 Aligned_cols=405 Identities=41% Similarity=0.732 Sum_probs=368.7
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHH
Q 009048 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ 94 (545)
Q Consensus 15 ~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq 94 (545)
..|+.+++++.+.+.|++.||+.+|||+|.++|+++++|+|+++.||||+|||+||++|++...+.+|||+|+++|+.||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~ 81 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQ 81 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC
Q 009048 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (545)
Q Consensus 95 ~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (545)
++.++.+|+.+..+++.............+..+. .+++|+|||.+.++.+...+. ...+++||||||||+++||
T Consensus 82 ~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~--~~ilv~Tpe~l~~~~~~~~l~----~~~~~~vViDEaH~i~~~g 155 (523)
T 1oyw_A 82 VDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFLEHLA----HWNPVLLAVDEAHCISQWG 155 (523)
T ss_dssp HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTC--CSEEEECHHHHTSTTHHHHHT----TSCEEEEEESSGGGGCTTS
T ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHhChHHHHHHh----hCCCCEEEEeCccccCcCC
Confidence 9999999999999999988877776666666654 789999999998776655443 3569999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHH
Q 009048 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (545)
Q Consensus 175 ~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~ 254 (545)
++||+.|..+..++..+|+.|+++||||+++.+..++...+++.++.++..+++++++.+.+.... ++...+.+++.
T Consensus 156 ~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~---~~~~~l~~~l~ 232 (523)
T 1oyw_A 156 HDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKF---KPLDQLMRYVQ 232 (523)
T ss_dssp SCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECS---SHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCC---CHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887653 45677888888
Q ss_pred hCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeC
Q 009048 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (545)
Q Consensus 255 ~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~ 334 (545)
...+.++||||+|++.++.+++.|.+.|+.+..|||+|++++|..+++.|.+|+.+|||||++++||||+|+|++|||++
T Consensus 233 ~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 233 EQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESS
T ss_pred hcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEEC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhhcccchHH
Q 009048 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRK 414 (545)
Q Consensus 335 ~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~ 414 (545)
+|.|++.|+||+|||||+|.+|.|++||++.|...++.++..... ++........+.+|+.||++..|||+
T Consensus 313 ~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~~~---------~~~~~~~~~~l~~m~~~~~~~~crr~ 383 (523)
T 1oyw_A 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQ---------GQLQDIERHKLNAMGAFAEAQTCRRL 383 (523)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTSCC---------SHHHHHHHHHHHHHHHHHTCSSCHHH
T ss_pred CCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhccCc---------HHHHHHHHHHHHHHHHHHhccccHhh
Confidence 999999999999999999999999999999999999888876211 12234456678999999999999999
Q ss_pred HHhhhhCCCCCcCCCCCCCCCCCCh
Q 009048 415 KILESFGEQIPVSLCKNSCDACKHP 439 (545)
Q Consensus 415 ~~l~~f~~~~~~~~c~~~Cd~C~~~ 439 (545)
.+++|||+..+ .+|+ .||+|..+
T Consensus 384 ~l~~~f~e~~~-~~c~-~cd~c~~~ 406 (523)
T 1oyw_A 384 VLLNYFGEGRQ-EPCG-NCDICLDP 406 (523)
T ss_dssp HHHHHTTCCCC-SCCS-CBHHHHSC
T ss_pred hhHhhcCCCCC-CCCC-CCCCCCCC
Confidence 99999999874 5687 59999864
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.2e-51 Score=431.51 Aligned_cols=334 Identities=18% Similarity=0.268 Sum_probs=271.3
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCeEE
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVL 82 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~~~~l 82 (545)
...|+.+.+++.+.+.|++ +||..|+|+|.++|+.+++|+|++++||||+|||++|++|++.. .+.+|
T Consensus 55 ~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~l 133 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 133 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEE
T ss_pred cCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEE
Confidence 3457778889999999987 79999999999999999999999999999999999999999742 45899
Q ss_pred EEcChHHHHHHHHHHHHHcC----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH-hhhccC
Q 009048 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRG 157 (545)
Q Consensus 83 Vi~P~~aL~~qq~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~ 157 (545)
|++||++|+.|+.+.+++++ +.+..+.++......... +. ...+|+++||+.+.. .+. ......
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~---~~~~Ivv~Tp~~l~~-----~l~~~~~~l~ 202 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNEC---IT---RGCHVVIATPGRLLD-----FVDRTFITFE 202 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHH---HT---TCCSEEEECHHHHHH-----HHHTTSCCCT
T ss_pred EEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHH---hh---cCCCEEEEChHHHHH-----HHHhCCcccc
Confidence 99999999999999998853 566667776665443322 22 136788888876532 121 123356
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC---CCccee
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFY 234 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~ni~~ 234 (545)
.+++||+||||++.+|| |++.+..+.......++.+++++|||+++.+..... ..+.++..+..... ..++..
T Consensus 203 ~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~--~~l~~~~~i~~~~~~~~~~~i~~ 278 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAG--EFLKNYVFVAIGIVGGACSDVKQ 278 (434)
T ss_dssp TCCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHH--TTCSSCEEEEESSTTCCCTTEEE
T ss_pred cCCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHH--HhccCCEEEEeccccccccccce
Confidence 68999999999999998 888887775544445688999999999988766333 33456665544322 233333
Q ss_pred eeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEe
Q 009048 235 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (545)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (545)
.+.... ...+...|.+++.....+ +||||++++.++.+++.|.+.|+++..+||++++.+|..+++.|++|+.+||||
T Consensus 279 ~~~~~~-~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLva 356 (434)
T 2db3_A 279 TIYEVN-KYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIA 356 (434)
T ss_dssp EEEECC-GGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEE
T ss_pred EEEEeC-cHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 333222 245677788888776554 999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 315 T~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
|+++++|||+|+|++||+|++|.+++.|+||+||+||.|+.|.|++|+++.
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred chhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 999999999999999999999999999999999999999999999999954
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.5e-50 Score=444.48 Aligned_cols=344 Identities=18% Similarity=0.240 Sum_probs=266.8
Q ss_pred hhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHHHHhcC----------CCeEEEEcChHH
Q 009048 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLIA 89 (545)
Q Consensus 22 ~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il--~g~d~lv~apTGsGKTl~~~lp~l~~----------~~~~lVi~P~~a 89 (545)
+++.+.+.|++ +||..|+|+|.++|+.++ .++|+++.||||+|||++|++|++.. ...+|||+||++
T Consensus 28 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 67889999986 899999999999999999 78899999999999999999999842 347999999999
Q ss_pred HHHHHHHHHHHc-----C---CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccE
Q 009048 90 LMENQVIGLKEK-----G---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (545)
Q Consensus 90 L~~qq~~~l~~~-----g---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~ 161 (545)
|+.|+.+.++++ + +....+.++....... ..+... ..+|+++||+.+.... ... .......+++
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~--~~~IlV~Tp~~l~~~l--~~~-~~~~~~~~~~ 178 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKL--RPNIVIATPGRLIDVL--EKY-SNKFFRFVDY 178 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHH--CCSEEEECHHHHHHHH--HHH-HHHHCTTCCE
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHH---HHHhcC--CCCEEEECHHHHHHHH--Hhc-cccccccCCE
Confidence 999999999874 2 3344455554433322 222221 2679999998764311 111 1223456899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCC-----CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEe--c-cCCCC---
Q 009048 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----DVPILALTATAAPKVQKDVMESLCLQNPLVLK--S-SFNRP--- 230 (545)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-----~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~--~-~~~r~--- 230 (545)
|||||||++++|| |++.+..+........ ++++++||||+++.+...+... +..+..+. . ....+
T Consensus 179 lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~--l~~~~~~~~~~~~~~~~~~~ 254 (579)
T 3sqw_A 179 KVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNI--MNKKECLFLDTVDKNEPEAH 254 (579)
T ss_dssp EEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTT--CCSSEEEEEESSCSSSCSSC
T ss_pred EEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHH--cCCCceEEEeecCccccccc
Confidence 9999999999999 9999988877665433 7789999999999876644333 33333222 1 11111
Q ss_pred -cceeeeecccchh----hHHHHHHHHHHh-CCCccEEEEecchhhHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHH
Q 009048 231 -NLFYEVRYKDLLD----DAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVL 301 (545)
Q Consensus 231 -ni~~~v~~~~~~~----~~~~~l~~~l~~-~~~~~~IIf~~t~~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~ 301 (545)
.+...+....... ..+..+...+.. ..+.++||||+|++.++.++..|.+. ++.+..|||+|++.+|..++
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~ 334 (579)
T 3sqw_A 255 ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 334 (579)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred cccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHH
Confidence 2222222222111 233444444443 45678999999999999999999886 89999999999999999999
Q ss_pred HHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcc
Q 009048 302 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (545)
Q Consensus 302 ~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~ 378 (545)
+.|++|+.+|||||+++++|||+|+|++||++++|.+++.|+||+||+||+|+.|.|++|+.+.|...++.+.+...
T Consensus 335 ~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 335 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887543
No 5
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.5e-50 Score=440.25 Aligned_cols=343 Identities=18% Similarity=0.232 Sum_probs=264.6
Q ss_pred hhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHHHHhcC----------CCeEEEEcChHH
Q 009048 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLIA 89 (545)
Q Consensus 22 ~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il--~g~d~lv~apTGsGKTl~~~lp~l~~----------~~~~lVi~P~~a 89 (545)
+++.+.+.|.+ +|+..|+|+|.++|+.++ .++|+++.||||+|||++|++|++.. ..++|||+||++
T Consensus 79 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 66788888876 799999999999999999 67899999999999999999999842 247999999999
Q ss_pred HHHHHHHHHHHc-----C---CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccE
Q 009048 90 LMENQVIGLKEK-----G---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (545)
Q Consensus 90 L~~qq~~~l~~~-----g---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~ 161 (545)
|+.|+.+.++++ + +....+.++....... ..+... ..+|+++||+.+.... ... .......+++
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~--~~~Iiv~Tp~~l~~~l--~~~-~~~~~~~~~~ 229 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKL--RPNIVIATPGRLIDVL--EKY-SNKFFRFVDY 229 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHH--CCSEEEECHHHHHHHH--HHH-HHHHCTTCCE
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHH---HHHhcC--CCCEEEECcHHHHHHH--Hhc-cccccccceE
Confidence 999999999873 2 3355555555443322 222221 2689999988764311 111 1223456899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhC-----CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec---cCCC----
Q 009048 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-----PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNR---- 229 (545)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-----~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r---- 229 (545)
|||||||++++|| |++.+..+....... +++++++||||+++.+...+...+ ..+..+.. ....
T Consensus 230 lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 305 (563)
T 3i5x_A 230 KVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM--NKKECLFLDTVDKNEPEAH 305 (563)
T ss_dssp EEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTC--CSSEEEEEESSCSSSCSSC
T ss_pred EEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhc--CCCceEEEeccCCCCcccc
Confidence 9999999999999 999998877665442 377899999999998766443333 33332221 1111
Q ss_pred Ccceeeeecccchhh----HHHHHHHHHHh-CCCccEEEEecchhhHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHH
Q 009048 230 PNLFYEVRYKDLLDD----AYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVL 301 (545)
Q Consensus 230 ~ni~~~v~~~~~~~~----~~~~l~~~l~~-~~~~~~IIf~~t~~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~ 301 (545)
..+...+........ .+..+...+.. ..+.++||||+|++.|+.++..|.+. ++.+..|||+|++.+|..++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~ 385 (563)
T 3i5x_A 306 ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 385 (563)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred ccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Confidence 122222222221112 23334444433 45678999999999999999999886 89999999999999999999
Q ss_pred HHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhc
Q 009048 302 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (545)
Q Consensus 302 ~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~ 377 (545)
+.|++|+.+|||||+++++|||+|+|++||++++|.+++.|+||+|||||.|++|.|++|+.+.|...++.+.+..
T Consensus 386 ~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 386 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887654
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-49 Score=416.77 Aligned_cols=347 Identities=20% Similarity=0.283 Sum_probs=274.6
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----------------
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------------- 77 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------------- 77 (545)
...|+.+.+++.+.+.|.. +||..|+|+|.++|+.++.|+|+++.||||+|||++|++|++..
T Consensus 14 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred cCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 3457778889999999987 79999999999999999999999999999999999999998742
Q ss_pred --------CCeEEEEcChHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChh
Q 009048 78 --------PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145 (545)
Q Consensus 78 --------~~~~lVi~P~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~ 145 (545)
.+++||++|+++|+.|+.+.++++ ++....+.++........ .+. ...+|+++||+.+....
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~~~~I~v~Tp~~l~~~l 166 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLE---RGCHLLVATPGRLVDMM 166 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHT---TCCSEEEECHHHHHHHH
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---Hhh---CCCCEEEEChHHHHHHH
Confidence 156999999999999999999874 566777777665544322 222 23688888888664211
Q ss_pred hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC--CcCEEEEEcCCChhhHHHHHHHhcCCCCeEE
Q 009048 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (545)
Q Consensus 146 ~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~--~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~ 223 (545)
.........+++|||||||++.+|+ |++.+..+.......+ ..+++++|||+++.+...+...+ .++..+
T Consensus 167 ----~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~ 238 (417)
T 2i4i_A 167 ----ERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL--DEYIFL 238 (417)
T ss_dssp ----HTTSBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC--SSCEEE
T ss_pred ----HcCCcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEE
Confidence 0112235568999999999999988 8887776643222222 57899999999888765444433 345443
Q ss_pred ec---cCCCCcceeeeecccchhhHHHHHHHHHHhC-CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHH
Q 009048 224 KS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299 (545)
Q Consensus 224 ~~---~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~ 299 (545)
.. ....+++...+.... ..++...+.++++.. .+.++||||++++.++.+++.|.+.|+.+..+||++++++|..
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~ 317 (417)
T 2i4i_A 239 AVGRVGSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREE 317 (417)
T ss_dssp EEC----CCSSEEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred EeCCCCCCccCceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHH
Confidence 32 223445544444332 245677778888765 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHh
Q 009048 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (545)
Q Consensus 300 ~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~ 376 (545)
+++.|++|+.+|||||+++++|||+|++++||++++|.|+..|+||+||+||.|+.|.|++|+++.|...+..+.+.
T Consensus 318 ~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 394 (417)
T 2i4i_A 318 ALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDL 394 (417)
T ss_dssp HHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHH
T ss_pred HHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776666543
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.5e-48 Score=410.18 Aligned_cols=346 Identities=18% Similarity=0.300 Sum_probs=276.1
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEEcCh
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lVi~P~ 87 (545)
...|+.+++++.+.+.|+. +|+..|+|+|.++++.+++|+|+++.+|||+|||++|++|++. ...++||++|+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt 114 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPT 114 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSS
T ss_pred CCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCc
Confidence 4457778889999999987 8999999999999999999999999999999999999999984 35789999999
Q ss_pred HHHHHHHHHHHHHcC----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEE
Q 009048 88 IALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (545)
Q Consensus 88 ~aL~~qq~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iV 163 (545)
++|+.|+.+.+++++ +.+....++......... +.. ..+++++||+.+.... .........+++||
T Consensus 115 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~---~~~ivv~Tp~~l~~~l----~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 115 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---LDY---GQHVVAGTPGRVFDMI----RRRSLRTRAIKMLV 184 (410)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---HHH---CCSEEEECHHHHHHHH----HTTSSCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---hhc---CCCEEEcCHHHHHHHH----HhCCccHhheeEEE
Confidence 999999999998854 556666666554433222 222 2578888887653211 01123345689999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec---cCCCCcceeeeecc
Q 009048 164 IDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYK 239 (545)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~ni~~~v~~~ 239 (545)
|||||++.+++ |+..+.. +...+ ++.+++++|||+++.+...+. ..+.+|..+.. ....+++...+...
T Consensus 185 iDEah~~~~~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (410)
T 2j0s_A 185 LDEADEMLNKG--FKEQIYD---VYRYLPPATQVVLISATLPHEILEMTN--KFMTDPIRILVKRDELTLEGIKQFFVAV 257 (410)
T ss_dssp EETHHHHTSTT--THHHHHH---HHTTSCTTCEEEEEESCCCHHHHTTGG--GTCSSCEEECCCGGGCSCTTEEEEEEEE
T ss_pred EccHHHHHhhh--hHHHHHH---HHHhCccCceEEEEEcCCCHHHHHHHH--HHcCCCEEEEecCccccCCCceEEEEEe
Confidence 99999999987 6655444 44444 478999999999887654222 22345554432 22333444333333
Q ss_pred cchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccc
Q 009048 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (545)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~ 319 (545)
.....+...+.+++.....+++||||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 258 ~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 337 (410)
T 2j0s_A 258 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 337 (410)
T ss_dssp SSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGS
T ss_pred CcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhh
Confidence 33345777888888777777999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhc
Q 009048 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (545)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~ 377 (545)
+|+|+|++++||++++|.+...|+||+||+||.|++|.|++|+++.|...++.+.+..
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~ 395 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYY 395 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHT
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988888776644
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.1e-48 Score=406.31 Aligned_cols=346 Identities=19% Similarity=0.261 Sum_probs=277.2
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEEcCh
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lVi~P~ 87 (545)
...|+.+++++.+.+.|.+ +||..|+|+|.++++.+++|+++++.+|||+|||++|++|++. .+.++||++|+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 4568889999999999997 7999999999999999999999999999999999999999985 34589999999
Q ss_pred HHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEE
Q 009048 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (545)
Q Consensus 88 ~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iV 163 (545)
++|+.|+.+.++.+ ++.+....++........ . .....+++++||+.+.... .........+++||
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~---~~~~~~Ivv~T~~~l~~~~----~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---R---LNETVHILVGTPGRVLDLA----SRKVADLSDCSLFI 168 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---H---TTSCCSEEEECHHHHHHHH----HTTCSCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---H---hcCCCCEEEEchHHHHHHH----HhCCcccccCCEEE
Confidence 99999999999875 566666666655433211 1 1234789999988663211 11223456689999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEe--ccCCCCcceeeeeccc
Q 009048 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKD 240 (545)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~ni~~~v~~~~ 240 (545)
|||||++.+.+ |+..+ ..+...++ ..+++++|||+++.+...+...+. .+..+. .....+++...+....
T Consensus 169 iDEaH~~~~~~--~~~~~---~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 241 (400)
T 1s2m_A 169 MDEADKMLSRD--FKTII---EQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH--KPYEINLMEELTLKGITQYYAFVE 241 (400)
T ss_dssp EESHHHHSSHH--HHHHH---HHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS--SCEEESCCSSCBCTTEEEEEEECC
T ss_pred EeCchHhhhhc--hHHHH---HHHHHhCCcCceEEEEEecCCHHHHHHHHHHcC--CCeEEEeccccccCCceeEEEEec
Confidence 99999987643 54443 34444443 678999999999988776665543 343332 2223334433222222
Q ss_pred chhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccccc
Q 009048 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (545)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~ 320 (545)
...+...+..++.....+++||||++++.++.+++.|.+.|+.+..+||+++..+|..+++.|++|+.+|||||+++++
T Consensus 242 -~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 320 (400)
T 1s2m_A 242 -ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTR 320 (400)
T ss_dssp -GGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSS
T ss_pred -hhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccc
Confidence 2456777788888777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcc
Q 009048 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (545)
Q Consensus 321 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~ 378 (545)
|+|+|++++||++++|.|...|+||+||+||.|++|.|++|+++.|...++.+.+...
T Consensus 321 Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 378 (400)
T 1s2m_A 321 GIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELG 378 (400)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999998888877543
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7e-48 Score=401.99 Aligned_cols=343 Identities=15% Similarity=0.216 Sum_probs=272.9
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcChHH
Q 009048 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIA 89 (545)
Q Consensus 16 ~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~a 89 (545)
.|+.+.+++.+.+.|++ +|+..|+|+|.++++.++.|+++++.+|||+|||++|++|++.. ..++||++|+++
T Consensus 9 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred ChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 57778889999999987 79999999999999999999999999999999999999999853 458999999999
Q ss_pred HHHHHHHHHHHc-----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEE
Q 009048 90 LMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (545)
Q Consensus 90 L~~qq~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iVi 164 (545)
|+.|+.+.++++ ++.+..+.++.......... ..+ ..+++++||+.+.... .........+++|||
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~--~~~iiv~T~~~l~~~~----~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKN--CPHIVVGTPGRILALA----RNKSLNLKHIKHFIL 158 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH---HHS--CCSEEEECHHHHHHHH----HTTSSCCTTCSEEEE
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH---hcC--CCCEEEECHHHHHHHH----HcCCccccccCEEEE
Confidence 999999999886 67788888777655443322 222 2578888888664311 011223566899999
Q ss_pred eccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccC----CCCcceeeeecc
Q 009048 165 DEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF----NRPNLFYEVRYK 239 (545)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~----~r~ni~~~v~~~ 239 (545)
||||++.+| ..|+..+..+ .... +..+++++|||+++.....+...+ ..+..+.... ...++...+...
T Consensus 159 DEaH~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (391)
T 1xti_A 159 DECDKMLEQ-LDMRRDVQEI---FRMTPHEKQVMMFSATLSKEIRPVCRKFM--QDPMEIFVDDETKLTLHGLQQYYVKL 232 (391)
T ss_dssp CSHHHHTSS-HHHHHHHHHH---HHTSCSSSEEEEEESSCCSTHHHHHHHHC--SSCEEEECCCCCCCCCTTCEEEEEEC
T ss_pred eCHHHHhhc-cchHHHHHHH---HhhCCCCceEEEEEeeCCHHHHHHHHHHc--CCCeEEEecCccccCcccceEEEEEc
Confidence 999999886 2355554443 3444 378899999999998776554444 3444433221 122232222222
Q ss_pred cchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccc
Q 009048 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (545)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~ 319 (545)
....+...+.+++.....+++||||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 233 -~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 311 (391)
T 1xti_A 233 -KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG 311 (391)
T ss_dssp -CGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCS
T ss_pred -CchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhh
Confidence 2345677788888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccH-HHHHHHHH
Q 009048 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFILS 375 (545)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~-~~~~~i~~ 375 (545)
+|+|+|++++||++++|.|...|+||+||+||.|++|.|++|+++.+. ..++.+.+
T Consensus 312 ~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 368 (391)
T 1xti_A 312 RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 368 (391)
T ss_dssp SCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987754 44444444
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.7e-48 Score=406.38 Aligned_cols=346 Identities=19% Similarity=0.268 Sum_probs=261.2
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEEcChH
Q 009048 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLI 88 (545)
Q Consensus 15 ~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lVi~P~~ 88 (545)
..|+.+++++.+.+.|++ +|+..|+++|.++++.++.|+++++.+|||+|||++|++|++. ..+++||++|++
T Consensus 40 ~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred cCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 456677888999999987 8999999999999999999999999999999999999999885 457899999999
Q ss_pred HHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEE
Q 009048 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (545)
Q Consensus 89 aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iVi 164 (545)
+|+.|+.+.++++ ++......++....... ..+... ..+|+++||+.+.... .........+++|||
T Consensus 119 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~iiv~T~~~l~~~l----~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 119 ELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV---QKLQME--APHIIVGTPGRVFDML----NRRYLSPKYIKMFVL 189 (414)
T ss_dssp HHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHH---HHHTTT--CCSEEEECHHHHHHHH----HHTSSCSTTCCEEEE
T ss_pred HHHHHHHHHHHHHhcccCceEEEEECCcchHHHH---HHHhcC--CCCEEEECHHHHHHHH----HcCCcccccCcEEEE
Confidence 9999999999885 45555555554433322 222222 3678888888763311 112233556899999
Q ss_pred eccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc---CCCCcceeeeeccc
Q 009048 165 DEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVRYKD 240 (545)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~ni~~~v~~~~ 240 (545)
||||++.+|+ |...+.. +...+ ++.++++||||+++.+...+.. .+.++..+... ....++...+....
T Consensus 190 DEah~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (414)
T 3eiq_A 190 DEADEMLSRG--FKDQIYD---IFQKLNSNTQVVLLSATMPSDVLEVTKK--FMRDPIRILVKKEELTLEGIRQFYINVE 262 (414)
T ss_dssp CSHHHHHHTT--THHHHHH---HHTTSCTTCEEEEECSCCCHHHHHHHTT--TCSSCEEECCCCCCCCTTSCCEEEEECS
T ss_pred ECHHHhhccC--cHHHHHH---HHHhCCCCCeEEEEEEecCHHHHHHHHH--HcCCCEEEEecCCccCCCCceEEEEEeC
Confidence 9999999887 5544443 44444 5889999999999887664332 23445444322 22233333333333
Q ss_pred chhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccccc
Q 009048 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (545)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~ 320 (545)
....+...+..++.....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 263 ~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 342 (414)
T 3eiq_A 263 REEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 342 (414)
T ss_dssp SSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC-
T ss_pred hHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcccc
Confidence 33457888888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhc
Q 009048 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (545)
Q Consensus 321 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~ 377 (545)
|||+|++++||++++|.|...|+||+||+||.|++|.|++++++.|...++.+.+..
T Consensus 343 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 399 (414)
T 3eiq_A 343 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 399 (414)
T ss_dssp -CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHT
T ss_pred CCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988887776543
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.1e-47 Score=390.29 Aligned_cols=341 Identities=19% Similarity=0.284 Sum_probs=272.1
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcC-----CCeEEEEcChHH
Q 009048 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIA 89 (545)
Q Consensus 16 ~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g-~d~lv~apTGsGKTl~~~lp~l~~-----~~~~lVi~P~~a 89 (545)
.|+.+++++.+.+.|++ +|+..|+|+|.++++.++++ +++++.+|||+|||++|++|++.. +.++||++|+++
T Consensus 7 ~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~ 85 (367)
T 1hv8_A 7 NFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRE 85 (367)
T ss_dssp CGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHH
T ss_pred chhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHH
Confidence 46677889999999997 79999999999999999988 699999999999999999998752 568999999999
Q ss_pred HHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEe
Q 009048 90 LMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (545)
Q Consensus 90 L~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViD 165 (545)
|+.|+.+.++++ ++.+....++.......... . ..+++++||+.+.... .........+++||+|
T Consensus 86 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~----~~~iiv~T~~~l~~~~----~~~~~~~~~~~~iIiD 154 (367)
T 1hv8_A 86 LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K----NANIVVGTPGRILDHI----NRGTLNLKNVKYFILD 154 (367)
T ss_dssp HHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H----TCSEEEECHHHHHHHH----HTTCSCTTSCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc---C----CCCEEEecHHHHHHHH----HcCCcccccCCEEEEe
Confidence 999999999884 45666666665544332222 1 2678888888653211 1112234568999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhh
Q 009048 166 EAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDD 244 (545)
Q Consensus 166 EaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~ 244 (545)
|||++.+|+ |...+.. +...+ ++.+++++|||+++.....+...++ ++..+..... .++...+... ...+
T Consensus 155 Eah~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~-~~~~ 225 (367)
T 1hv8_A 155 EADEMLNMG--FIKDVEK---ILNACNKDKRILLFSATMPREILNLAKKYMG--DYSFIKAKIN-ANIEQSYVEV-NENE 225 (367)
T ss_dssp THHHHHTTT--THHHHHH---HHHTSCSSCEEEEECSSCCHHHHHHHHHHCC--SEEEEECCSS-SSSEEEEEEC-CGGG
T ss_pred CchHhhhhc--hHHHHHH---HHHhCCCCceEEEEeeccCHHHHHHHHHHcC--CCeEEEecCC-CCceEEEEEe-ChHH
Confidence 999999887 6554444 34444 5788999999999987765555443 3333333222 2333222222 2346
Q ss_pred HHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccccccccc
Q 009048 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324 (545)
Q Consensus 245 ~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~ 324 (545)
++..+..++. ..+.++||||++++.++.+++.|.+.|+.+..+||+++..+|..+++.|.+|+.+|||||+++++|+|+
T Consensus 226 ~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~ 304 (367)
T 1hv8_A 226 RFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDV 304 (367)
T ss_dssp HHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCC
T ss_pred HHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCc
Confidence 6777777776 455689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcc
Q 009048 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (545)
Q Consensus 325 p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~ 378 (545)
|++++||++++|.|+..|+||+||+||.|++|.+++++++.|...++.+.+...
T Consensus 305 ~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 358 (367)
T 1hv8_A 305 NDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMK 358 (367)
T ss_dssp SCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHT
T ss_pred ccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999888876543
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1e-46 Score=393.11 Aligned_cols=340 Identities=17% Similarity=0.241 Sum_probs=267.1
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhc------CCCeEEEEcC
Q 009048 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (545)
Q Consensus 15 ~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~lp~l~------~~~~~lVi~P 86 (545)
..|+.+++++.+.+.|.+ +|+..|+|+|.++++.++.+ +++++.+|||+|||++|++|++. .++++||++|
T Consensus 5 ~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CSSTTSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred cCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 567888999999999997 89999999999999999998 89999999999999999999875 3568999999
Q ss_pred hHHHHHHHHHHHHHcC----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEE
Q 009048 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (545)
Q Consensus 87 ~~aL~~qq~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~i 162 (545)
+++|+.|+.+.+++++ +......+..... ......+++++||+.+.... .........+++|
T Consensus 84 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~iiv~T~~~l~~~~----~~~~~~~~~~~~i 149 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEK----------NKQINAQVIVGTPGTVLDLM----RRKLMQLQKIKIF 149 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT----------TSCBCCSEEEECHHHHHHHH----HTTCBCCTTCCEE
T ss_pred CHHHHHHHHHHHHHHhcccCeeEEEEecCchhh----------hccCCCCEEEEcHHHHHHHH----HcCCcccccCCEE
Confidence 9999999999999854 3333333322110 11124678888888663211 1122335668999
Q ss_pred EEeccccccc-cCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec---cCCCCcceeeee
Q 009048 163 AIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVR 237 (545)
Q Consensus 163 ViDEaH~i~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~ni~~~v~ 237 (545)
||||||++.+ ++ |+..+..+ ...+ ++.+++++|||+++.+.......+ ..+..+.. ....+.+...+.
T Consensus 150 IiDEah~~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 222 (395)
T 3pey_A 150 VLDEADNMLDQQG--LGDQCIRV---KRFLPKDTQLVLFSATFADAVRQYAKKIV--PNANTLELQTNEVNVDAIKQLYM 222 (395)
T ss_dssp EEETHHHHHHSTT--HHHHHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHHS--CSCEEECCCGGGCSCTTEEEEEE
T ss_pred EEEChhhhcCccc--cHHHHHHH---HHhCCCCcEEEEEEecCCHHHHHHHHHhC--CCCeEEEccccccccccccEEEE
Confidence 9999999987 44 55544443 3434 468999999999988766444433 33333322 233344444444
Q ss_pred cccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc
Q 009048 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (545)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (545)
.......+...+..++.....+++||||++++.++.+++.|++.|+.+..+||++++.+|..+++.|++|+.+|||||++
T Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 302 (395)
T 3pey_A 223 DCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV 302 (395)
T ss_dssp ECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG
T ss_pred EcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh
Confidence 44444567777888877777789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEeCCCC------CHHHHHHHHhhccCCCCCCeEEEEeccccHH-HHHHHHHh
Q 009048 318 FGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR-RMEFILSK 376 (545)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~------s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~-~~~~i~~~ 376 (545)
+++|||+|++++||++++|. |+..|+||+||+||.|+.|.|++++.+.+.. .++.+.+.
T Consensus 303 ~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~ 368 (395)
T 3pey_A 303 LARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKY 368 (395)
T ss_dssp GSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHH
T ss_pred hhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999876544 44444443
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5.4e-47 Score=397.87 Aligned_cols=346 Identities=19% Similarity=0.246 Sum_probs=270.3
Q ss_pred cccccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhc------CCCeE
Q 009048 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA------KPGIV 81 (545)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~lp~l~------~~~~~ 81 (545)
...+...|+.+++++.+.+.|++ +|+..|+|+|.++++.++.+ +++++.||||+|||++|++|++. ..+++
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQC 98 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCE
T ss_pred CccccCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCE
Confidence 34455678889999999999997 89999999999999999987 89999999999999999999874 23489
Q ss_pred EEEcChHHHHHHHHHHHHHcC-----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh--hh
Q 009048 82 LVVSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IH 154 (545)
Q Consensus 82 lVi~P~~aL~~qq~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~ 154 (545)
||++|+++|+.|+.+.+++++ +......++..... ......+|+++||+.+.. .+.+ ..
T Consensus 99 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ivv~T~~~l~~-----~~~~~~~~ 164 (412)
T 3fht_A 99 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTVLD-----WCSKLKFI 164 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT---------TCCCCCSEEEECHHHHHH-----HHTTSCSS
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh---------hhcCCCCEEEECchHHHH-----HHHhcCCc
Confidence 999999999999998888753 33443333322110 112235788888876522 1111 22
Q ss_pred ccCCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc---CCC
Q 009048 155 SRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNR 229 (545)
Q Consensus 155 ~~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r 229 (545)
....+++|||||||++.+ ++ |...+..+ ...+ ++.+++++|||+++.+.......+ .++..+... ...
T Consensus 165 ~~~~~~~iViDEah~~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 237 (412)
T 3fht_A 165 DPKKIKVFVLDEADVMIATQG--HQDQSIRI---QRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETL 237 (412)
T ss_dssp CGGGCCEEEEETHHHHHSTTT--THHHHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHHS--SSCEEECCCGGGSSC
T ss_pred ChhhCcEEEEeCHHHHhhcCC--cHHHHHHH---HhhCCCCceEEEEEeecCHHHHHHHHHhc--CCCeEEeeccccccc
Confidence 234589999999999987 44 55544443 3333 478999999999998776544433 455544332 223
Q ss_pred CcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 009048 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (545)
Q Consensus 230 ~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (545)
+++...+........++..+..++.....+++||||++++.++.++..|.+.|+.+..+||+|++.+|..+++.|++|+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 317 (412)
T 3fht_A 238 DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 317 (412)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCC
Confidence 34444444444456778888888887777899999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccccccccccCCCcEEEEeCCC------CCHHHHHHHHhhccCCCCCCeEEEEecccc-HHHHHHHHHhc
Q 009048 310 QVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKN 377 (545)
Q Consensus 310 ~VLVaT~a~~~GiD~p~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d-~~~~~~i~~~~ 377 (545)
+|||||+++++|||+|++++||++++| .|...|+||+||+||.|+.|.|++++++.+ ...++.+.+..
T Consensus 318 ~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 392 (412)
T 3fht_A 318 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHF 392 (412)
T ss_dssp SEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHH
T ss_pred cEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHH
Confidence 999999999999999999999999999 578999999999999999999999998765 55666655543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.4e-47 Score=386.81 Aligned_cols=325 Identities=18% Similarity=0.227 Sum_probs=257.0
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHc-
Q 009048 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK- 101 (545)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~- 101 (545)
++.+.+.|++ +|+..|+|+|.++++.+++++++++.+|||+|||++|++|++..+..+||++|+++|+.|+.+.++++
T Consensus 2 ~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 2 NEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp CHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 4678899986 89999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ---CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCH
Q 009048 102 ---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (545)
Q Consensus 102 ---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (545)
++.+..+.++.......... . ..+++++||+.+.... .........+++||+||||++.+|+ |.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~---~----~~~i~v~T~~~l~~~~----~~~~~~~~~~~~iViDEah~~~~~~--~~ 147 (337)
T 2z0m_A 81 RYMDTKVAEVYGGMPYKAQINRV---R----NADIVVATPGRLLDLW----SKGVIDLSSFEIVIIDEADLMFEMG--FI 147 (337)
T ss_dssp TTSCCCEEEECTTSCHHHHHHHH---T----TCSEEEECHHHHHHHH----HTTSCCGGGCSEEEEESHHHHHHTT--CH
T ss_pred hhcCCcEEEEECCcchHHHHhhc---C----CCCEEEECHHHHHHHH----HcCCcchhhCcEEEEEChHHhhccc--cH
Confidence 46677777766554432221 1 2678888888764311 0112224458999999999999988 55
Q ss_pred HHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHHhCC
Q 009048 179 PSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257 (545)
Q Consensus 179 ~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~ 257 (545)
..+ ..+....+ ..+++++|||+++.....+...+ .++..+......+++...+...... .......+....
T Consensus 148 ~~~---~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 219 (337)
T 2z0m_A 148 DDI---KIILAQTSNRKITGLFSATIPEEIRKVVKDFI--TNYEEIEACIGLANVEHKFVHVKDD---WRSKVQALRENK 219 (337)
T ss_dssp HHH---HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHS--CSCEEEECSGGGGGEEEEEEECSSS---SHHHHHHHHTCC
T ss_pred HHH---HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhc--CCceeeecccccCCceEEEEEeChH---HHHHHHHHHhCC
Confidence 444 34445554 56677899999998776655544 3444444444444544433332211 122235556667
Q ss_pred CccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~ 337 (545)
++++||||++++.++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~ 295 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ 295 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC
Confidence 7889999999999999999886 578999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHH
Q 009048 338 SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (545)
Q Consensus 338 s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~ 374 (545)
|+..|+||+||+||.|++|.|++|+. .|...++.+.
T Consensus 296 s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~ 331 (337)
T 2z0m_A 296 DLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVK 331 (337)
T ss_dssp SHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC
T ss_pred CHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHH
Confidence 99999999999999999999999999 7766666554
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.3e-48 Score=405.90 Aligned_cols=344 Identities=19% Similarity=0.254 Sum_probs=148.2
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEEcC
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lVi~P 86 (545)
....|+.+++++.+.+.|.. +|+.+|+|+|.++++.+++|+++++.+|||+|||++|++|++. .++++||++|
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 97 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 97 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcC
Confidence 34568888999999999987 8999999999999999999999999999999999999999885 3568999999
Q ss_pred hHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEE
Q 009048 87 LIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (545)
Q Consensus 87 ~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~i 162 (545)
+++|+.|+.+.++++ ++.+..+.++........... ..+++++||+.+.... .........+++|
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~i~v~T~~~l~~~~----~~~~~~~~~~~~v 166 (394)
T 1fuu_A 98 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-------DAQIVVGTPGRVFDNI----QRRRFRTDKIKMF 166 (394)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-------HCSEEEECHHHHHHHH----HTTSSCCTTCCEE
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-------CCCEEEECHHHHHHHH----HhCCcchhhCcEE
Confidence 999999999998874 567777777766554433222 2678888888763211 1112234568999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccC---CCCcceeeeec
Q 009048 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRY 238 (545)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~ni~~~v~~ 238 (545)
|+||||++.+|+ |+..+..+ ...+ ++.+++++|||+++.+...+...+ ..|..+.... ..+++...+..
T Consensus 167 IiDEah~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 239 (394)
T 1fuu_A 167 ILDEADEMLSSG--FKEQIYQI---FTLLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRILVKKDELTLEGIKQFYVN 239 (394)
T ss_dssp EEETHHHHHHTT--CHHHHHHH---HHHSCTTCEEEEECSSCCHHHHHHHHHHC--CSCEEEEECC--------------
T ss_pred EEEChHHhhCCC--cHHHHHHH---HHhCCCCceEEEEEEecCHHHHHHHHHhc--CCCeEEEecCccccCCCceEEEEE
Confidence 999999999887 77665554 3333 578899999999988766544443 3444333221 22222222222
Q ss_pred ccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc
Q 009048 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (545)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (545)
......+...+.+++.....+++||||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 319 (394)
T 1fuu_A 240 VEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 319 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChh
Confidence 22222345556666666667789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHH
Q 009048 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (545)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~ 375 (545)
++|+|+|++++||++++|.|+..|+||+||+||.|++|.|++|+++.|...++.+.+
T Consensus 320 ~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 320 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp ---------------------------------------------------------
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877766654
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.3e-46 Score=393.30 Aligned_cols=328 Identities=16% Similarity=0.218 Sum_probs=254.0
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHH
Q 009048 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (545)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~ 99 (545)
.+++.+.+++.||+ +|+|+|.++++.+++|+|+++.||||+|||++|++|++. .++.+||++|+++|+.|+.+.++
T Consensus 7 ~~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 7 YEDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH
Confidence 36678889999999 599999999999999999999999999999999999876 67899999999999999999999
Q ss_pred H---cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC--
Q 009048 100 E---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-- 174 (545)
Q Consensus 100 ~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g-- 174 (545)
+ .|+.+..+.++.....+......+..+. .+|+++||+.+... ........+++|||||||++.+||
T Consensus 86 ~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~--~~Iiv~Tp~~l~~~------l~~~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 86 KLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVFSTQFVSKN------REKLSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC--CSEEEEEHHHHHHC------HHHHTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHccCCceEEEEECCCChhhHHHHHHHhhcCC--CCEEEECHHHHHHH------HHHhccccccEEEEeChHhhhhccch
Confidence 9 4778999999988876666666666553 67888888866421 112345569999999999999887
Q ss_pred -------CCCHHH-HHHHHHHHH------h---CCCcCEEEEEcCC-ChhhHHHHHHHh-cCCCCeEEeccCCCCcceee
Q 009048 175 -------HDFRPS-YRKLSSLRN------Y---LPDVPILALTATA-APKVQKDVMESL-CLQNPLVLKSSFNRPNLFYE 235 (545)
Q Consensus 175 -------~~fr~~-~~~l~~l~~------~---~~~~~~l~lTAT~-~~~~~~~i~~~l-~~~~~~~~~~~~~r~ni~~~ 235 (545)
..|++. +..+..... . .++.+++++|||+ +..+...+...+ ..... ......+++...
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~ 234 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG---RLVSVARNITHV 234 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS---CCCCCCCSEEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC---ccccccccchhe
Confidence 678887 455443332 1 1578999999994 444433333332 21111 111223334333
Q ss_pred eecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEE-EecCCCCHHHHHHHHHHHHcCCCcEEEe
Q 009048 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA 314 (545)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (545)
+... ++...+.++++.. +.++||||++++.++.++..|...|+.+. .|||. +|. ++.|++|+++||||
T Consensus 235 ~~~~----~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS----RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS----CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc----CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 3322 2344555666553 36899999999999999999999999998 99994 444 99999999999999
Q ss_pred ----ccccccccccCC-CcEEEEeCCC--CCHHHHHHHHhhccCCC----CCCeEEEEeccccHHHHHHHHH
Q 009048 315 ----TVAFGMGIDRKD-VRLVCHFNIP--KSMEAFYQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILS 375 (545)
Q Consensus 315 ----T~a~~~GiD~p~-v~~VI~~~~p--~s~~~y~Qr~GRagR~g----~~~~~i~~~~~~d~~~~~~i~~ 375 (545)
|+++++|||+|+ |++||++++| .|+..|+||+||+||.| ..|.+++++ .|...++.+.+
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~ 373 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKT 373 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHH
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHH
Confidence 999999999999 9999999999 99999999999999988 478999998 55555544443
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=9.4e-47 Score=405.06 Aligned_cols=341 Identities=19% Similarity=0.252 Sum_probs=136.8
Q ss_pred cccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------CCeEEE
Q 009048 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLV 83 (545)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~lp~l~~------~~~~lV 83 (545)
.+...|+.+.+++.+.+.|+. +||..|+|+|.++++.++.+ +++++.||||+|||++|++|++.. .+.+||
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~li 167 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC 167 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEE
T ss_pred cCcCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEE
Confidence 345577888899999999997 89999999999999999987 899999999999999999999853 238999
Q ss_pred EcChHHHHHHHHHHHHHcC-----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh--hhcc
Q 009048 84 VSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (545)
Q Consensus 84 i~P~~aL~~qq~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~ 156 (545)
|+|+++|+.|+.+.++.++ +......++..... ......+|+++||+.+.. .+.+ ....
T Consensus 168 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~Ivv~Tp~~l~~-----~l~~~~~~~~ 233 (479)
T 3fmp_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTVLD-----WCSKLKFIDP 233 (479)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT---------TCCCCCSEEEECHHHHHH-----HHTTSCCCCG
T ss_pred EeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc---------cccCCCCEEEECchHHHH-----HHHhcCCcCc
Confidence 9999999999988877642 33333333221110 011235788888876521 1111 2223
Q ss_pred CCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC---CCc
Q 009048 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPN 231 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~n 231 (545)
..+++|||||||++.+ ++ |...+.. +...+ ++.+++++|||++..+....... +.++..+..... ...
T Consensus 234 ~~~~~iViDEah~~~~~~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 306 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQG--HQDQSIR---IQRMLPRNCQMLLFSATFEDSVWKFAQKV--VPDPNVIKLKREEETLDT 306 (479)
T ss_dssp GGCCEEEECCHHHHHTSTT--HHHHHHH---HHTTSCTTSEEEEEESCCCHHHHHHHHHH--SSSEEEEEEC--------
T ss_pred ccCCEEEEECHHHHhhcCC--cHHHHHH---HHhhCCccceEEEEeCCCCHHHHHHHHHH--cCCCeEEeccccccCcCC
Confidence 5689999999999986 44 5444433 33433 47899999999999876644333 345554433221 122
Q ss_pred ceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 009048 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (545)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (545)
+...+........+...+..++......++||||++++.++.++..|...|+.+..+||++++.+|..+++.|++|+.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~i 386 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcE
Confidence 22222222222455666777776666778999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccCCCcEEEEeCCC------CCHHHHHHHHhhccCCCCCCeEEEEecccc-HHHHHHHH
Q 009048 312 VVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFIL 374 (545)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d-~~~~~~i~ 374 (545)
||||+++++|||+|++++||+|++| .+...|+||+|||||.|+.|.|++|+++.+ ...++.+.
T Consensus 387 Lv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~ 456 (479)
T 3fmp_B 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 456 (479)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHH
Confidence 9999999999999999999999999 577899999999999999999999998765 44444443
No 18
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2e-46 Score=420.88 Aligned_cols=385 Identities=18% Similarity=0.216 Sum_probs=236.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----C----CeEEEEcChHHHHHHH-HHHHHHcC---Cc
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----P----GIVLVVSPLIALMENQ-VIGLKEKG---IA 104 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----~----~~~lVi~P~~aL~~qq-~~~l~~~g---i~ 104 (545)
+|||+|.++++.++.|+++++.+|||+|||++|++|++.. . +++|||+|+++|+.|| ++.+++++ +.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 5999999999999999999999999999999999998752 2 7899999999999999 99999864 67
Q ss_pred eeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHH--HHhhhccCCccEEEEeccccccccCCCCHHHHH
Q 009048 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK--LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (545)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~--l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~ 182 (545)
+..++++........... ...+|+++||+.+........ .........+++|||||||++.. ++.++....
T Consensus 87 v~~~~g~~~~~~~~~~~~------~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~-~~~~~~i~~ 159 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPEVV------KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK-EAVYNNIMR 159 (699)
T ss_dssp EEEEC----CCCCHHHHH------HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT-TBSSCSHHH
T ss_pred EEEEeCCcchhhHHHhhh------cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc-cchHHHHHH
Confidence 777776654322111111 137899999997753211000 11122344589999999999843 333443333
Q ss_pred HHHH--HHHhC---------CCcCEEEEEcCCChh-------hHHHHH---HHhcCCCCeE-------EeccCCCCccee
Q 009048 183 KLSS--LRNYL---------PDVPILALTATAAPK-------VQKDVM---ESLCLQNPLV-------LKSSFNRPNLFY 234 (545)
Q Consensus 183 ~l~~--l~~~~---------~~~~~l~lTAT~~~~-------~~~~i~---~~l~~~~~~~-------~~~~~~r~ni~~ 234 (545)
.+.. +.... |..++++||||+... ....+. ..+....... +.....+|+..+
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 2211 11111 678899999999973 333333 3333200000 000112222222
Q ss_pred eeecccc-------------------------------------------------------------------------
Q 009048 235 EVRYKDL------------------------------------------------------------------------- 241 (545)
Q Consensus 235 ~v~~~~~------------------------------------------------------------------------- 241 (545)
.......
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110000
Q ss_pred -----------------------------------------------------------hhhH----HHHHHHHHHhCC-
Q 009048 242 -----------------------------------------------------------LDDA----YADLCSVLKANG- 257 (545)
Q Consensus 242 -----------------------------------------------------------~~~~----~~~l~~~l~~~~- 257 (545)
...+ ...|...+...+
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 0000 111222222233
Q ss_pred CccEEEEecchhhHHHHHHHHHhC------CCcEEEecCC--------CCHHHHHHHHHHHHcCCCcEEEeccccccccc
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~------g~~~~~~h~~--------l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD 323 (545)
+.++||||++++.++.+++.|.+. |+.+..+||+ |++.+|..++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 678999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHH--------HHHHHHhcccCCCCccchhhhhhHHH
Q 009048 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR--------MEFILSKNQSKNSQSFSTRERSSKKS 395 (545)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~ 395 (545)
+|+|++|||||+|.|+..|+||+|||||.| +.+++++...+... .+.++....... +.....+...+..
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~ 556 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSGVIERETVNDFREKMMYKAIHCV-QNMKPEEYAHKIL 556 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHH
Confidence 999999999999999999999999988776 44444544333111 111222111111 1111111112223
Q ss_pred HHHHHHHHHHhhcccchHHHHhhhhCCCCCcCCCCCCCC
Q 009048 396 ISDFSQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCD 434 (545)
Q Consensus 396 ~~~~~~~~~~~~~~~Crr~~~l~~f~~~~~~~~c~~~Cd 434 (545)
..++..+..+++...|+++..+.||++... ..|+ .||
T Consensus 557 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~c~-~c~ 593 (699)
T 4gl2_A 557 ELQMQSIMEKKMKTKRNIAKHYKNNPSLIT-FLCK-NCS 593 (699)
T ss_dssp HHHHHHHHHCCSCCC----------CCSEE-EEES-SSC
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhcCcceeE-EECC-CCC
Confidence 335678889999999999999999998753 2354 355
No 19
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.8e-44 Score=414.84 Aligned_cols=393 Identities=17% Similarity=0.234 Sum_probs=271.2
Q ss_pred CChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCCCeEEEEcChHHHHHHHHH
Q 009048 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVI 96 (545)
Q Consensus 20 ~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l---~~~~~~lVi~P~~aL~~qq~~ 96 (545)
+..-.++...+...|||+ |+++|.++|+.+++|+|+++.||||+|||++|++|+. ..++++||++|+++|+.|+++
T Consensus 22 ~~~f~~l~~~~~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~ 100 (997)
T 4a4z_A 22 IENFDELIPNPARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFR 100 (997)
T ss_dssp CTTHHHHCSSCSCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHH
T ss_pred ccchhhhhHhHHHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 333445555566678887 8999999999999999999999999999999887765 357789999999999999999
Q ss_pred HHHHc--CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC
Q 009048 97 GLKEK--GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (545)
Q Consensus 97 ~l~~~--gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (545)
.+++. ++.+..++++... ....+++|+||+++..... ........+++|||||||++.+|+
T Consensus 101 ~l~~~~~~~~v~~l~G~~~~-------------~~~~~IlV~Tpe~L~~~l~----~~~~~l~~l~lvViDEaH~l~d~~ 163 (997)
T 4a4z_A 101 DFKETFDDVNIGLITGDVQI-------------NPDANCLIMTTEILRSMLY----RGADLIRDVEFVIFDEVHYVNDQD 163 (997)
T ss_dssp HHHTTC--CCEEEECSSCEE-------------CTTSSEEEEEHHHHHHHHH----HTCSGGGGEEEEEECCTTCCCTTC
T ss_pred HHHHHcCCCeEEEEeCCCcc-------------CCCCCEEEECHHHHHHHHH----hCchhhcCCCEEEEECcccccccc
Confidence 99985 5677777765531 2347899999997743211 112233458999999999999998
Q ss_pred CCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcC---CCCeEEeccCCCCcceeeeecc-----------
Q 009048 175 HDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL---QNPLVLKSSFNRPNLFYEVRYK----------- 239 (545)
Q Consensus 175 ~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~---~~~~~~~~~~~r~ni~~~v~~~----------- 239 (545)
+ ...+..+ ...+ +++++++||||++... ++..+++. ....++........+...+...
T Consensus 164 ~--g~~~e~i---i~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~ 236 (997)
T 4a4z_A 164 R--GVVWEEV---IIMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNS 236 (997)
T ss_dssp T--TCCHHHH---HHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTC
T ss_pred h--HHHHHHH---HHhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchh
Confidence 4 4444443 3334 4799999999987653 34444432 2222332222222222111000
Q ss_pred --------------------------------------------------------------------------------
Q 009048 240 -------------------------------------------------------------------------------- 239 (545)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (545)
T Consensus 237 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 316 (997)
T 4a4z_A 237 EFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQ 316 (997)
T ss_dssp CBCHHHHHHHHHHHC-----------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred -cchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCC-----------------------------------
Q 009048 240 -DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI----------------------------------- 283 (545)
Q Consensus 240 -~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~----------------------------------- 283 (545)
......+..+...+...+..++||||+|++.|+.++..|...|+
T Consensus 317 ~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~ 396 (997)
T 4a4z_A 317 DGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRS 396 (997)
T ss_dssp CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHH
T ss_pred cccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHH
Confidence 00123455677777777778999999999999999999987665
Q ss_pred ----cEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCC---------CHHHHHHHHhhcc
Q 009048 284 ----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAG 350 (545)
Q Consensus 284 ----~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~---------s~~~y~Qr~GRag 350 (545)
.+..|||+|++.+|..+++.|.+|.++|||||+++++|||+|+ +.||+++.|+ |+.+|+||+||||
T Consensus 397 ~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAG 475 (997)
T 4a4z_A 397 LLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAG 475 (997)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGC
T ss_pred HhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccc
Confidence 4789999999999999999999999999999999999999999 7777777776 9999999999999
Q ss_pred CCC--CCCeEEEEe--ccccHHHHHHHHHhcccCCCCcc-chhhh---hhHHHHHHHHHHHHHh------hcccchHHHH
Q 009048 351 RDQ--LPSKSLLYY--GMDDRRRMEFILSKNQSKNSQSF-STRER---SSKKSISDFSQMVDYC------EGSGCRRKKI 416 (545)
Q Consensus 351 R~g--~~~~~i~~~--~~~d~~~~~~i~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~------~~~~Crr~~~ 416 (545)
|.| ..|.|++++ +..+...++.++........... .+... ..+......+.|..++ +...|++...
T Consensus 476 R~G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~ 555 (997)
T 4a4z_A 476 RRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQ 555 (997)
T ss_dssp CTTTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred cCCCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999 466777777 44566777777654433211110 00000 0011111334555554 4568999999
Q ss_pred hhhhCCCCCcCCCCCCCCCCCCh
Q 009048 417 LESFGEQIPVSLCKNSCDACKHP 439 (545)
Q Consensus 417 l~~f~~~~~~~~c~~~Cd~C~~~ 439 (545)
+.+|++......|. .||+|..+
T Consensus 556 l~~l~~~~~~~~~~-~c~~c~~~ 577 (997)
T 4a4z_A 556 IKVLQEELQTIEYK-SCEICDND 577 (997)
T ss_dssp HHHHHHHHHC-------------
T ss_pred HHHHHHHHHHhhhh-cccccccc
Confidence 99999876544566 69999643
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.3e-44 Score=405.86 Aligned_cols=391 Identities=18% Similarity=0.215 Sum_probs=227.2
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEEcChHHHHHHHHHHHH
Q 009048 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLK 99 (545)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~~~~lVi~P~~aL~~qq~~~l~ 99 (545)
..|. .+|+..|||+|.++++.++.|+|+++++|||+|||++|++|++.. .+++|||+|+++|+.||.+.++
T Consensus 4 ~~l~-~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 4 SDTN-LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ---C-TTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred Cccc-ccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3444 489999999999999999999999999999999999999998742 2789999999999999999999
Q ss_pred Hc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh--hhccCCccEEEEecccccccc
Q 009048 100 EK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSW 173 (545)
Q Consensus 100 ~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~~~l~~iViDEaH~i~~~ 173 (545)
++ ++.+..+.++......... +.. ..+|+++||+.+... +.. ......+++|||||||++..+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~---~~~---~~~Iiv~Tp~~L~~~-----l~~~~~~~l~~~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQ---IVE---NNDIIILTPQILVNN-----LKKGTIPSLSIFTLMIFDECHNTSKQ 151 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHH---HHH---TCSEEEECHHHHHHH-----HHTTSSCCGGGCSEEEEETGGGCSTT
T ss_pred HHhccCCceEEEEeCCccccccHHH---hcc---CCCEEEECHHHHHHH-----HhcCcccccccccEEEEeCCCcccCc
Confidence 86 7888877776543221111 111 378999998876331 211 113455899999999999865
Q ss_pred CCCCHHHHHHHHHHHHh-----CCCcCEEEEEcCCC-------hhhHHHHHHHhcCCCCeEEecc---------------
Q 009048 174 GHDFRPSYRKLSSLRNY-----LPDVPILALTATAA-------PKVQKDVMESLCLQNPLVLKSS--------------- 226 (545)
Q Consensus 174 g~~fr~~~~~l~~l~~~-----~~~~~~l~lTAT~~-------~~~~~~i~~~l~~~~~~~~~~~--------------- 226 (545)
. .++.....+ +... .+..++++||||+. ......+...+...+..++...
T Consensus 152 ~-~~~~i~~~~--l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~ 228 (696)
T 2ykg_A 152 H-PYNMIMFNY--LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQ 228 (696)
T ss_dssp C-HHHHHHHHH--HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCE
T ss_pred c-cHHHHHHHH--HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCc
Confidence 3 233222211 2221 25788999999998 4444555444322111111100
Q ss_pred ------CCCCc-cee-----------------------------------------------------------------
Q 009048 227 ------FNRPN-LFY----------------------------------------------------------------- 234 (545)
Q Consensus 227 ------~~r~n-i~~----------------------------------------------------------------- 234 (545)
..+.. ++.
T Consensus 229 ~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (696)
T 2ykg_A 229 KFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 308 (696)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHH
T ss_pred eeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHH
Confidence 00000 000
Q ss_pred -----------------------------------------------eee---------------cccchhhHHHHHHHH
Q 009048 235 -----------------------------------------------EVR---------------YKDLLDDAYADLCSV 252 (545)
Q Consensus 235 -----------------------------------------------~v~---------------~~~~~~~~~~~l~~~ 252 (545)
.+. .......++..|.++
T Consensus 309 l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~l 388 (696)
T 2ykg_A 309 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 388 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 000 000012355556666
Q ss_pred HHhC----CCccEEEEecchhhHHHHHHHHHhCC----CcEEEe--------cCCCCHHHHHHHHHHHHc-CCCcEEEec
Q 009048 253 LKAN----GDTCAIVYCLERTTCDELSAYLSAGG----ISCAAY--------HAGLNDKARSSVLDDWIS-SRKQVVVAT 315 (545)
Q Consensus 253 l~~~----~~~~~IIf~~t~~~~~~l~~~L~~~g----~~~~~~--------h~~l~~~~R~~~~~~f~~-g~~~VLVaT 315 (545)
+... ++.++||||+++..++.+++.|...| +.+..+ ||+|++++|..++++|++ |+.+|||||
T Consensus 389 l~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT 468 (696)
T 2ykg_A 389 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 468 (696)
T ss_dssp HHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEE
T ss_pred HHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEe
Confidence 6543 56789999999999999999999988 888888 569999999999999998 999999999
Q ss_pred cccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcccCCCCccchhhhhhHHH
Q 009048 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKS 395 (545)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 395 (545)
+++++|||+|+|++|||||+|.|++.|+||+|| ||. ++|.+++++...+......+......... ....+.....
T Consensus 469 ~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~~ 543 (696)
T 2ykg_A 469 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMN---DSILRLQTWD 543 (696)
T ss_dssp ESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHH---HHHHHHTTSC
T ss_pred chhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHH---HHHHHhhccC
Confidence 999999999999999999999999999999999 998 68999999998887554433110000000 0000000001
Q ss_pred HHH-HHHHHHHhhcccchHHHHhhhhCCCCCcCCCCCCCCCCCCh
Q 009048 396 ISD-FSQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCDACKHP 439 (545)
Q Consensus 396 ~~~-~~~~~~~~~~~~Crr~~~l~~f~~~~~~~~c~~~Cd~C~~~ 439 (545)
.+. ..++.++.+...+.+.....+.... ....|...|++|..+
T Consensus 544 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~c~~c~~~ 587 (696)
T 2ykg_A 544 EAVFREKILHIQTHEKFIRDSQEKPKPVP-DKENKKLLCRKCKAL 587 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCC-CCSCEEEEESSSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcc-cccchhhhccCCCce
Confidence 111 2455666666555555544443222 233455579999864
No 21
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-45 Score=394.76 Aligned_cols=341 Identities=17% Similarity=0.226 Sum_probs=219.0
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcChH
Q 009048 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (545)
Q Consensus 17 ~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~ 88 (545)
+.+..+.+.+.+.|.+ .|+..|+++|.++++.++++ +++++.||||+|||++|++|++.. .+++||++|++
T Consensus 121 ~~~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred cccccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 3445566777788876 69999999999999999998 999999999999999999988742 45899999999
Q ss_pred HHHHHHHHHHHHcCCceeE-ecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecc
Q 009048 89 ALMENQVIGLKEKGIAGEF-LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEA 167 (545)
Q Consensus 89 aL~~qq~~~l~~~gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEa 167 (545)
+|+.|+.+.+++++..... .......... .......+|+++||+.+.... .........+++||||||
T Consensus 200 ~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~T~~~l~~~l----~~~~~~~~~~~lIIiDEa 268 (508)
T 3fho_A 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVP-------KGAKIDAQIVIGTPGTVMDLM----KRRQLDARDIKVFVLDEA 268 (508)
T ss_dssp HHHHHHHHHHHHHSTTSSCCEEC-----------------CCCCSEEEECHHHHHHHH----HTTCSCCTTCCEEEECCH
T ss_pred HHHHHHHHHHHHhCCccCeeEEEEeCCccc-------ccccCCCCEEEECHHHHHHHH----HcCCccccCCCEEEEech
Confidence 9999999999986432111 0111110000 011124788888888763311 112223566899999999
Q ss_pred ccccc-cCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec---cCCCCcceeeeecccch
Q 009048 168 HCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKDLL 242 (545)
Q Consensus 168 H~i~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~ni~~~v~~~~~~ 242 (545)
|++++ ++ |...+..+ ...+ ++.+++++|||+++.+.......+ ..+..+.. ....+++...+......
T Consensus 269 H~~~~~~~--~~~~~~~i---~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (508)
T 3fho_A 269 DNMLDQQG--LGDQSMRI---KHLLPRNTQIVLFSATFSERVEKYAERFA--PNANEIRLKTEELSVEGIKQLYMDCQSE 341 (508)
T ss_dssp HHHTTC----CHHHHHHH---HHHSCTTCEEEEEESCCSTHHHHHHHHHS--TTCEEECCCCCC----CCCCEEEEC--C
T ss_pred hhhcccCC--cHHHHHHH---HHhCCcCCeEEEEeCCCCHHHHHHHHHhc--CCCeEEEeccccCCcccceEEEEECCch
Confidence 99987 44 66555444 3434 378899999999887665433332 33433322 12222333333333333
Q ss_pred hhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccccccc
Q 009048 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (545)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~Gi 322 (545)
..+...+..++.....+++||||++++.++.++..|.+.++.+..+||+++..+|..+++.|.+|+.+|||||+++++||
T Consensus 342 ~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 342 EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 56677777777777778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEeCCC------CCHHHHHHHHhhccCCCCCCeEEEEeccc-cHHHHHHHHHh
Q 009048 323 DRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSK 376 (545)
Q Consensus 323 D~p~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~~~~i~~~~~~-d~~~~~~i~~~ 376 (545)
|+|++++||++++| .|+..|+||+||+||.|++|.|++|+.+. +...++.+.+.
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~ 482 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEY 482 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHH
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHH
Confidence 99999999999999 89999999999999999999999999844 44445555443
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-42 Score=396.76 Aligned_cols=339 Identities=16% Similarity=0.121 Sum_probs=243.5
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHH
Q 009048 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (545)
Q Consensus 16 ~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~ 92 (545)
.+...++.+.+...+...|++. |+|+|.++|+.++.|++++++||||||||++|++|++. .++++||++|+++|+.
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~-ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~ 241 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSN 241 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSC-CCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred CcccCCCChhhhHHHHHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Confidence 3444454455545555555655 99999999999999999999999999999999999875 4889999999999999
Q ss_pred HHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009048 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (545)
Q Consensus 93 qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (545)
|+++.+++....+..+.+... ..+..+|+++||+++...-. ........+++|||||||++.+
T Consensus 242 Q~~~~l~~~~~~VglltGd~~-------------~~~~~~IlV~Tpe~L~~~L~----~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 242 QKYRELLAEFGDVGLMTGDIT-------------INPDAGCLVMTTEILRSMLY----RGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp HHHHHHHHHTSSEEEECSSCB-------------CCCSCSEEEEEHHHHHHHHH----HCSSHHHHEEEEEEETGGGTTS
T ss_pred HHHHHHHHHhCCccEEeCccc-------------cCCCCCEEEeChHHHHHHHH----cCccccccCCEEEEhhhhhccc
Confidence 999999996657777666543 22357899999987644211 1111123489999999999998
Q ss_pred cCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhh-HHHHHHHhcCCCCeEEeccCCCCcceeeee------------c
Q 009048 173 WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKV-QKDVMESLCLQNPLVLKSSFNRPNLFYEVR------------Y 238 (545)
Q Consensus 173 ~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~-~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~------------~ 238 (545)
|+ |...+..+ ...+ +++++++||||++... ...+..........++........+...+. .
T Consensus 305 ~~--rg~~~e~i---i~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~ 379 (1108)
T 3l9o_A 305 KE--RGVVWEET---IILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDE 379 (1108)
T ss_dssp HH--HHHHHHHH---HHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEET
T ss_pred cc--hHHHHHHH---HHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeecc
Confidence 87 55555544 3333 4789999999987652 222222222222223322222111111110 0
Q ss_pred ccc------------------------------------------hhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHH
Q 009048 239 KDL------------------------------------------LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSA 276 (545)
Q Consensus 239 ~~~------------------------------------------~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~ 276 (545)
... ....+..+...+...+..++||||++++.|+.++.
T Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~ 459 (1108)
T 3l9o_A 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELAL 459 (1108)
T ss_dssp TTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHH
Confidence 000 02233445555556667789999999999999999
Q ss_pred HHHhCCCc---------------------------------------EEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc
Q 009048 277 YLSAGGIS---------------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (545)
Q Consensus 277 ~L~~~g~~---------------------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (545)
.|...++. +..+||+|++.+|..+++.|.+|.++|||||++
T Consensus 460 ~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~v 539 (1108)
T 3l9o_A 460 KMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATET 539 (1108)
T ss_dssp HTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESC
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcH
Confidence 98653322 789999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEeCC--------CCCHHHHHHHHhhccCCC--CCCeEEEEeccc-cHHHHHHHHHhc
Q 009048 318 FGMGIDRKDVRLVCHFNI--------PKSMEAFYQESGRAGRDQ--LPSKSLLYYGMD-DRRRMEFILSKN 377 (545)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~--------p~s~~~y~Qr~GRagR~g--~~~~~i~~~~~~-d~~~~~~i~~~~ 377 (545)
+++|||+|++++||+++. |.|+.+|+||+|||||.| ..|.|++++++. +...+..++...
T Consensus 540 la~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 540 FSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp CCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred HhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCC
Confidence 999999999999997665 348889999999999999 688999998876 556666666543
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.7e-41 Score=369.98 Aligned_cols=320 Identities=19% Similarity=0.264 Sum_probs=183.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEEcChHHHHHHHHHHHHHc----C
Q 009048 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----G 102 (545)
Q Consensus 35 g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~~~~lVi~P~~aL~~qq~~~l~~~----g 102 (545)
+.-+|||+|.++++.++.|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++ +
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3346999999999999999999999999999999999998753 788999999999999999999885 8
Q ss_pred CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh--hhccCCccEEEEeccccccccCCCCHHH
Q 009048 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPS 180 (545)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~~~l~~iViDEaH~i~~~g~~fr~~ 180 (545)
+.+..++++........... . ..+|+++||+.+.. .+.. ......+++|||||||++..|+. +...
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~---~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~ 151 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVI---E---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVL 151 (556)
T ss_dssp CCEEECCCC-----CHHHHH---H---HCSEEEECHHHHHH-----HHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHH
T ss_pred ceEEEEeCCCCcchhHHHhh---C---CCCEEEECHHHHHH-----HHHhCcccccccCCEEEEECCcccCCcch-HHHH
Confidence 88888877764433221111 1 26788888887532 1221 11456689999999999998873 3222
Q ss_pred HHHHHHHHHh----CCCcCEEEEEcCCChh----------hHHHHHHHhcCCCCeEEe-------ccCCCCcceeeeecc
Q 009048 181 YRKLSSLRNY----LPDVPILALTATAAPK----------VQKDVMESLCLQNPLVLK-------SSFNRPNLFYEVRYK 239 (545)
Q Consensus 181 ~~~l~~l~~~----~~~~~~l~lTAT~~~~----------~~~~i~~~l~~~~~~~~~-------~~~~r~ni~~~v~~~ 239 (545)
...+ +... .+..++++||||+... ....+...++........ ....++...+.....
T Consensus 152 ~~~~--~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (556)
T 4a2p_A 152 MTRY--LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR 229 (556)
T ss_dssp HHHH--HHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC
T ss_pred HHHH--HHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCC
Confidence 2111 1111 3568899999999642 122233333321000000 000111111100000
Q ss_pred --------------------------------------------------------------------------------
Q 009048 240 -------------------------------------------------------------------------------- 239 (545)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (545)
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (556)
T 4a2p_A 230 RIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLR 309 (556)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------------cchhhHHHHHHHHHHh----CC
Q 009048 240 ----------------------------------------------------------DLLDDAYADLCSVLKA----NG 257 (545)
Q Consensus 240 ----------------------------------------------------------~~~~~~~~~l~~~l~~----~~ 257 (545)
.....++..|.+++.. .+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~ 389 (556)
T 4a2p_A 310 KYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP 389 (556)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCC
Confidence 0001234444445533 56
Q ss_pred CccEEEEecchhhHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHHHc-CCCcEEEecccccccccc
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGIDR 324 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VLVaT~a~~~GiD~ 324 (545)
+.++||||+++..++.++..|.+. |.....+||+|++++|..++++|++ |+++|||||+++++|||+
T Consensus 390 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDi 469 (556)
T 4a2p_A 390 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI 469 (556)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC--------
T ss_pred CceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCc
Confidence 679999999999999999999875 5566677889999999999999999 999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHH
Q 009048 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (545)
Q Consensus 325 p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~ 370 (545)
|+|++|||||+|.|+..|+||+|| ||. .+|.+++++...+....
T Consensus 470 p~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 470 VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp ---CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 999999999999999999999999 999 78999999998776433
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.2e-41 Score=379.63 Aligned_cols=328 Identities=22% Similarity=0.245 Sum_probs=244.9
Q ss_pred CCCCC--hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCCCeEEEEcChHHHH
Q 009048 17 NKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALM 91 (545)
Q Consensus 17 ~~~~~--~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l---~~~~~~lVi~P~~aL~ 91 (545)
|++++ +++.+.+.+++ +||..|+|+|.++++.+.++++++++||||+|||++|.+|++ ..+++++|++|+++|+
T Consensus 3 f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La 81 (702)
T 2p6r_A 3 VEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALA 81 (702)
T ss_dssp SHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred hhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHH
Confidence 44455 77888888886 899999999999999999999999999999999999999887 4578999999999999
Q ss_pred HHHHHHHHH---cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhh-hccCCccEEEEecc
Q 009048 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAIDEA 167 (545)
Q Consensus 92 ~qq~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~-~~~~~l~~iViDEa 167 (545)
.|+++.++. +|+.+..+.+....... .....+|+++|||.+.. .+... .....+++||||||
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---------~~~~~~Iiv~Tpe~l~~-----~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 82 GEKYESFKKWEKIGLRIGISTGDYESRDE---------HLGDCDIIVTTSEKADS-----LIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp HHHHHHHTTTTTTTCCEEEECSSCBCCSS---------CSTTCSEEEEEHHHHHH-----HHHTTCSGGGGCCEEEETTG
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCcchh---------hccCCCEEEECHHHHHH-----HHHcChhHHhhcCEEEEeee
Confidence 999999854 46777776665432211 11247899999987632 11111 11445899999999
Q ss_pred ccccccCCCCHHHHHHH-HHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeee------ccc
Q 009048 168 HCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------YKD 240 (545)
Q Consensus 168 H~i~~~g~~fr~~~~~l-~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~------~~~ 240 (545)
|++.+|+ +.+.+..+ ..++...++.++++||||+++ ..++..+++. ..+..+.....+...+. ..+
T Consensus 148 H~l~~~~--r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 148 HLLDSEK--RGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDA---DYYVSDWRPVPLVEGVLCEGTLELFD 220 (702)
T ss_dssp GGGGCTT--THHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTC---EEEECCCCSSCEEEEEECSSEEEEEE
T ss_pred eecCCCC--cccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCC---CcccCCCCCccceEEEeeCCeeeccC
Confidence 9999876 44444443 344445578999999999985 3566666652 22222221111111110 000
Q ss_pred ------chhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC------------------------------CCc
Q 009048 241 ------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------------------GIS 284 (545)
Q Consensus 241 ------~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~------------------------------g~~ 284 (545)
........+.+.+. .++++||||++++.++.++..|.+. +..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 298 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG 298 (702)
T ss_dssp TTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTT
T ss_pred cchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcC
Confidence 00014455555554 3568999999999999999998753 135
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEE----eC---CCCCHHHHHHHHhhccCCC--CC
Q 009048 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN---IPKSMEAFYQESGRAGRDQ--LP 355 (545)
Q Consensus 285 ~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~----~~---~p~s~~~y~Qr~GRagR~g--~~ 355 (545)
+..+||+|++++|..+++.|.+|+++|||||+++++|||+|++++||+ |+ .|.|..+|.||+|||||.| .+
T Consensus 299 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~ 378 (702)
T 2p6r_A 299 AAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDER 378 (702)
T ss_dssp CCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred eEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 788999999999999999999999999999999999999999999999 66 7999999999999999998 47
Q ss_pred CeEEEEeccccHH
Q 009048 356 SKSLLYYGMDDRR 368 (545)
Q Consensus 356 ~~~i~~~~~~d~~ 368 (545)
|.|++++...+..
T Consensus 379 G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 379 GEAIIIVGKRDRE 391 (702)
T ss_dssp EEEEEECCGGGHH
T ss_pred ceEEEEecCccHH
Confidence 8999999988844
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.7e-40 Score=371.73 Aligned_cols=324 Identities=20% Similarity=0.261 Sum_probs=242.3
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHH
Q 009048 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90 (545)
Q Consensus 16 ~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~-il~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL 90 (545)
.|+.+++++.+.+.+++ +||..|+|+|.++++. +.++++++++||||||||++|.+|++. .+++++|++|+++|
T Consensus 9 ~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~L 87 (715)
T 2va8_A 9 PIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRAL 87 (715)
T ss_dssp BGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHH
T ss_pred cHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHH
Confidence 46778888999999987 8999999999999999 778999999999999999999988863 57899999999999
Q ss_pred HHHHHHHHHH---cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh-hhccCCccEEEEec
Q 009048 91 MENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDE 166 (545)
Q Consensus 91 ~~qq~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~-~~~~~~l~~iViDE 166 (545)
+.|+++.++. +|+.+..+.+....... .+ ...+|+++|||.+... +.. ......+++|||||
T Consensus 88 a~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tpe~l~~~-----~~~~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 88 TNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL----KNYDIIITTYEKLDSL-----WRHRPEWLNEVNYFVLDE 153 (715)
T ss_dssp HHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG----GGCSEEEECHHHHHHH-----HHHCCGGGGGEEEEEECS
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc----CCCCEEEEcHHHHHHH-----HhCChhHhhccCEEEEec
Confidence 9999999854 47777776665433211 01 1478999999876431 111 11245689999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcce------------e
Q 009048 167 AHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF------------Y 234 (545)
Q Consensus 167 aH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~------------~ 234 (545)
||++.+++ +.+.+..+ ....++.++++||||+++. .++..+++.. .+........+. +
T Consensus 154 ~H~l~~~~--~~~~l~~i---~~~~~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~r~~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 154 LHYLNDPE--RGPVVESV---TIRAKRRNLLALSATISNY--KQIAKWLGAE---PVATNWRPVPLIEGVIYPERKKKEY 223 (715)
T ss_dssp GGGGGCTT--THHHHHHH---HHHHHTSEEEEEESCCTTH--HHHHHHHTCE---EEECCCCSSCEEEEEEEECSSTTEE
T ss_pred hhhcCCcc--cchHHHHH---HHhcccCcEEEEcCCCCCH--HHHHHHhCCC---ccCCCCCCCCceEEEEecCCcccce
Confidence 99998755 44444443 3333489999999999753 5566666531 121111110110 1
Q ss_pred eeeccc-------chhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCC-------------------------
Q 009048 235 EVRYKD-------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG------------------------- 282 (545)
Q Consensus 235 ~v~~~~-------~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g------------------------- 282 (545)
.+...+ .....+..+.+.+. .++++||||++++.++.++..|.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 224 NVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp EEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred eeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 111111 01344555555554 45689999999999999999998642
Q ss_pred -----------CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEE----eC-------CCCCHH
Q 009048 283 -----------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-------IPKSME 340 (545)
Q Consensus 283 -----------~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~----~~-------~p~s~~ 340 (545)
..+..+||+|++++|..+++.|.+|.++|||||+++++|||+|++++||+ |+ .|.|..
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~ 381 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIM 381 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHH
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHH
Confidence 24899999999999999999999999999999999999999999999999 98 899999
Q ss_pred HHHHHHhhccCCCC--CCeEEEEecccc
Q 009048 341 AFYQESGRAGRDQL--PSKSLLYYGMDD 366 (545)
Q Consensus 341 ~y~Qr~GRagR~g~--~~~~i~~~~~~d 366 (545)
+|.||+|||||.|. +|.|++++...+
T Consensus 382 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 382 EYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999984 789999998776
No 26
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.5e-41 Score=387.37 Aligned_cols=320 Identities=18% Similarity=0.265 Sum_probs=190.4
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEEcChHHHHHHHHHHHHHc---
Q 009048 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK--- 101 (545)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~~~~lVi~P~~aL~~qq~~~l~~~--- 101 (545)
.+|+..|||+|.++++.++.|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+...++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 456888999999999999999999999999999999999999864 778999999999999999999885
Q ss_pred -CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh--hhccCCccEEEEeccccccccCCCCH
Q 009048 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFR 178 (545)
Q Consensus 102 -gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~~~l~~iViDEaH~i~~~g~~fr 178 (545)
++.+..++++........... . ..+|+++||+.+.. .+.. ......+++|||||||++...+. ++
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~---~---~~~IvI~Tp~~L~~-----~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~ 390 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVI---E---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNHP-YN 390 (936)
T ss_dssp TTCCEEEECCC-----CCHHHH---H---HCSEEEECHHHHHH-----HHHSSSCCCGGGCSEEEEETGGGCSTTCH-HH
T ss_pred cCceEEEEECCcchhhHHHHhc---c---CCCEEEecHHHHHH-----HHHcCccccccCCCEEEEECccccCCCcc-HH
Confidence 888888887764433211111 1 26788888887533 1111 11234579999999999987642 33
Q ss_pred HHHHHHHHHH--HhCCCcCEEEEEcCCCh----------hhHHHHHHHhcCCCCeEEec---------cCCCCcceeeee
Q 009048 179 PSYRKLSSLR--NYLPDVPILALTATAAP----------KVQKDVMESLCLQNPLVLKS---------SFNRPNLFYEVR 237 (545)
Q Consensus 179 ~~~~~l~~l~--~~~~~~~~l~lTAT~~~----------~~~~~i~~~l~~~~~~~~~~---------~~~r~ni~~~v~ 237 (545)
.....+.... ...+..++++||||+.. .....+...++.. .+... ...++...+...
T Consensus 391 ~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~--~i~~~~~~~~~l~~~~~~p~~~~~~~ 468 (936)
T 4a2w_A 391 VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEIDVRLV 468 (936)
T ss_dssp HHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHSCCCCEEEEEC
T ss_pred HHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc--eeecccccHHHHHHhccCCcceEEec
Confidence 3222221111 11456889999999953 1222233333321 00000 001111111000
Q ss_pred cc------------------------------------------------------------------------------
Q 009048 238 YK------------------------------------------------------------------------------ 239 (545)
Q Consensus 238 ~~------------------------------------------------------------------------------ 239 (545)
..
T Consensus 469 ~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~ 548 (936)
T 4a2w_A 469 KRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH 548 (936)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 00
Q ss_pred ------------------------------------------------------------cchhhHHHHHHHHHHh----
Q 009048 240 ------------------------------------------------------------DLLDDAYADLCSVLKA---- 255 (545)
Q Consensus 240 ------------------------------------------------------------~~~~~~~~~l~~~l~~---- 255 (545)
.....++..|.+++..
T Consensus 549 l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~ 628 (936)
T 4a2w_A 549 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY 628 (936)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcc
Confidence 0001233445555544
Q ss_pred CCCccEEEEecchhhHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHHHc-CCCcEEEecccccccc
Q 009048 256 NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGI 322 (545)
Q Consensus 256 ~~~~~~IIf~~t~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VLVaT~a~~~Gi 322 (545)
.++.++||||++++.++.++..|.+. |..+..+||+|++.+|..++++|++ |+++|||||+++++||
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 35678999999999999999999986 5566778999999999999999998 9999999999999999
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHH
Q 009048 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (545)
Q Consensus 323 D~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~ 368 (545)
|+|+|++|||||+|.|+..|+||+|| ||. .+|.+++++...+..
T Consensus 709 Dlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp -CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred cchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 99999999999999999999999999 999 689999999887654
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.5e-40 Score=385.25 Aligned_cols=292 Identities=16% Similarity=0.199 Sum_probs=219.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH
Q 009048 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
+.+.+.++..+|+. |+|+|.++++.+++|+|++++||||+|||++|++|++. .++.+|||+||++|+.|+.+.+++
T Consensus 65 ~~~~~~~~~~~gf~-pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 65 EDFRSFFKKKFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp HHHHHHHHHHSSSC-CCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH
Confidence 34556777788994 99999999999999999999999999999998888765 678899999999999999999999
Q ss_pred ---cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC---
Q 009048 101 ---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG--- 174 (545)
Q Consensus 101 ---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g--- 174 (545)
.++.+..++++.....+......+..+. .+|+++||+.+.. +........+++|||||||++..++
T Consensus 144 l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~--~~IlV~Tp~rL~~------~l~~l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 144 LADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVFSTQFVSK------NREKLSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp TSCTTSCEEEECTTCCTTHHHHHHHHHHTSC--CSEEEEEHHHHHH------SHHHHHTSCCSEEEESCHHHHTTSSHHH
T ss_pred hhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC--CCEEEECHHHHHH------HHHhhcccCcCEEEEeCCCccccccccc
Confidence 4678888888887766656666666553 6788888876532 1112345569999999999987633
Q ss_pred ------CCCHHH-HHHHHHHHH------h---CCCcCEEEEEcCCCh-hhHHHHHHHhcCCCCeEEeccCCCCcceeeee
Q 009048 175 ------HDFRPS-YRKLSSLRN------Y---LPDVPILALTATAAP-KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR 237 (545)
Q Consensus 175 ------~~fr~~-~~~l~~l~~------~---~~~~~~l~lTAT~~~-~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~ 237 (545)
..|.+. +..+..... . .++.+++++|||+.+ .+...+...+.. ..+.......+++...+.
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~--i~v~~~~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN--FTVGRLVSVARNITHVRI 293 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC--CCCCBCCCCCCCEEEEEE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee--EEeccCCCCcCCceeEEE
Confidence 236665 455443332 0 146899999999544 333233332211 111122333445544444
Q ss_pred cccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEE-EecCCCCHHHHHHHHHHHHcCCCcEEEe--
Q 009048 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA-- 314 (545)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~VLVa-- 314 (545)
.. ++...|.+++...+ +++||||++++.++.++..|...|+.+. .+|| +|.. ++.|++|+.+||||
T Consensus 294 ~~----~k~~~L~~ll~~~~-~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVata 362 (1104)
T 4ddu_A 294 SS----RSKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQ 362 (1104)
T ss_dssp SC----CCHHHHHHHHHHHC-SSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEET
T ss_pred ec----CHHHHHHHHHHhcC-CCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEec
Confidence 33 23445566665533 6899999999999999999999999998 9999 2555 99999999999999
Q ss_pred --ccccccccccCC-CcEEEEeCCCC
Q 009048 315 --TVAFGMGIDRKD-VRLVCHFNIPK 337 (545)
Q Consensus 315 --T~a~~~GiD~p~-v~~VI~~~~p~ 337 (545)
|+++++|||+|+ |++|||||+|.
T Consensus 363 s~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 363 AYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999998
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5.9e-41 Score=377.21 Aligned_cols=327 Identities=20% Similarity=0.265 Sum_probs=245.7
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHHH
Q 009048 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALM 91 (545)
Q Consensus 17 ~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~-il~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL~ 91 (545)
|+.+++++.+.+.+++ +|+..|+|+|.++++. +.+++++++++|||+|||++|.+|++. .+++++|++|+++|+
T Consensus 3 f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa 81 (720)
T 2zj8_A 3 VDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALA 81 (720)
T ss_dssp GGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGH
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 5667888999999987 8999999999999998 889999999999999999999998873 478999999999999
Q ss_pred HHHHHHHHH---cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 009048 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (545)
Q Consensus 92 ~qq~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (545)
.|+++.++. +|+.+..+.+....... .. ...+|+++|||.+... .. ........+++|||||||
T Consensus 82 ~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tpe~l~~~--~~--~~~~~l~~~~~vIiDE~H 148 (720)
T 2zj8_A 82 EEKFQEFQDWEKIGLRVAMATGDYDSKDE-----WL----GKYDIIIATAEKFDSL--LR--HGSSWIKDVKILVADEIH 148 (720)
T ss_dssp HHHHHHTGGGGGGTCCEEEECSCSSCCCG-----GG----GGCSEEEECHHHHHHH--HH--HTCTTGGGEEEEEEETGG
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCCcccc-----cc----CCCCEEEECHHHHHHH--HH--cChhhhhcCCEEEEECCc
Confidence 999999864 57788777765432211 01 1478999999876331 11 111224458999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeee------eccc--
Q 009048 169 CISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV------RYKD-- 240 (545)
Q Consensus 169 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v------~~~~-- 240 (545)
++.+++ +.+.+..+..... ++.++++||||+++. .++..+++.. .+........+...+ ....
T Consensus 149 ~l~~~~--r~~~~~~ll~~l~--~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~rp~~l~~~~~~~~~~~~~~~~ 219 (720)
T 2zj8_A 149 LIGSRD--RGATLEVILAHML--GKAQIIGLSATIGNP--EELAEWLNAE---LIVSDWRPVKLRRGVFYQGFVTWEDGS 219 (720)
T ss_dssp GGGCTT--THHHHHHHHHHHB--TTBEEEEEECCCSCH--HHHHHHTTEE---EEECCCCSSEEEEEEEETTEEEETTSC
T ss_pred ccCCCc--ccHHHHHHHHHhh--cCCeEEEEcCCcCCH--HHHHHHhCCc---ccCCCCCCCcceEEEEeCCeeeccccc
Confidence 998765 4444444322222 378999999999763 5566666531 121111111111000 0000
Q ss_pred --chhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC------------------C---------------CcE
Q 009048 241 --LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------G---------------ISC 285 (545)
Q Consensus 241 --~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~------------------g---------------~~~ 285 (545)
........+.+.+. .++++||||++++.++.++..|.+. + ..+
T Consensus 220 ~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v 297 (720)
T 2zj8_A 220 IDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGV 297 (720)
T ss_dssp EEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTE
T ss_pred hhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCe
Confidence 01233444555554 3468999999999999999998753 1 248
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEE----eC----CCCCHHHHHHHHhhccCCC--CC
Q 009048 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN----IPKSMEAFYQESGRAGRDQ--LP 355 (545)
Q Consensus 286 ~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~----~~----~p~s~~~y~Qr~GRagR~g--~~ 355 (545)
..+||+|++++|..+++.|.+|.++|||||+++++|||+|++++||+ |+ .|.|..+|.||+|||||.| .+
T Consensus 298 ~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~ 377 (720)
T 2zj8_A 298 AFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEV 377 (720)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSE
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999998 66 6899999999999999998 47
Q ss_pred CeEEEEeccccHH
Q 009048 356 SKSLLYYGMDDRR 368 (545)
Q Consensus 356 ~~~i~~~~~~d~~ 368 (545)
|.|++++...+..
T Consensus 378 G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 378 GEGIIVSTSDDPR 390 (720)
T ss_dssp EEEEEECSSSCHH
T ss_pred ceEEEEecCccHH
Confidence 8899999988744
No 29
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.1e-40 Score=363.27 Aligned_cols=316 Identities=20% Similarity=0.253 Sum_probs=207.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEEcChHHHHHHHHHHHHHc----CCce
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----GIAG 105 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~~~~lVi~P~~aL~~qq~~~l~~~----gi~~ 105 (545)
+|||+|.++++.++.|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++ ++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5899999999999999999999999999999999998753 778999999999999999999886 8888
Q ss_pred eEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh--hhccCCccEEEEeccccccccCCCCHHHHHH
Q 009048 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (545)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~ 183 (545)
..+.++........... . ..+|+++||+.+.. .+.. ......+++|||||||++..++. ++.....
T Consensus 84 ~~~~g~~~~~~~~~~~~---~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~ 151 (555)
T 3tbk_A 84 ASISGATSDSVSVQHII---E---DNDIIILTPQILVN-----NLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFR 151 (555)
T ss_dssp EEECTTTGGGSCHHHHH---H---HCSEEEECHHHHHH-----HHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHH
T ss_pred EEEcCCCcchhhHHHHh---c---CCCEEEECHHHHHH-----HHhcCcccccccCCEEEEECccccCCcch-HHHHHHH
Confidence 88887764432211111 1 26788888887533 1211 11344589999999999988652 3332212
Q ss_pred HHHHHHh-----CCCcCEEEEEcCCChhh----------HHHHHHHhcCCCCeEEec---------cCCCCcceeeeecc
Q 009048 184 LSSLRNY-----LPDVPILALTATAAPKV----------QKDVMESLCLQNPLVLKS---------SFNRPNLFYEVRYK 239 (545)
Q Consensus 184 l~~l~~~-----~~~~~~l~lTAT~~~~~----------~~~i~~~l~~~~~~~~~~---------~~~r~ni~~~v~~~ 239 (545)
+ +... .+..++++||||+.... ...+...++.. .+... ...++...+.....
T Consensus 152 ~--~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 227 (555)
T 3tbk_A 152 Y--LDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS--VIATVRDNVAELEQVVYKPQKISRKVAS 227 (555)
T ss_dssp H--HHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS--EEECCCSCHHHHHTTCCCCCEEEEECCC
T ss_pred H--HHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe--eeeccccCHHHHHhhcCCCceEEEEecC
Confidence 1 2222 15678999999996532 22233333321 11100 01111111110000
Q ss_pred --------------------------------------------------------------------------------
Q 009048 240 -------------------------------------------------------------------------------- 239 (545)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (545)
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 307 (555)
T 3tbk_A 228 RTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHL 307 (555)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------------cchhhHHHHHHHHHHh----C
Q 009048 240 -----------------------------------------------------------DLLDDAYADLCSVLKA----N 256 (545)
Q Consensus 240 -----------------------------------------------------------~~~~~~~~~l~~~l~~----~ 256 (545)
.....++..+.+++.. .
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 387 (555)
T 3tbk_A 308 RKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLK 387 (555)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccC
Confidence 0001233444444433 4
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCC------------CcEEEecCCCCHHHHHHHHHHHHc-CCCcEEEeccccccccc
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGG------------ISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGID 323 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g------------~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VLVaT~a~~~GiD 323 (545)
++.++||||+++..++.++..|...| .....+||+|++++|..++++|++ |+++|||||+++++|||
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlD 467 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGID 467 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEE
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCc
Confidence 56799999999999999999999864 345566779999999999999999 99999999999999999
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHH
Q 009048 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371 (545)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~ 371 (545)
+|+|++|||||+|.|+..|+||+|| ||. .+|.+++|+.+.+.....
T Consensus 468 lp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 468 IAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp TTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 9999999999999999999999999 998 799999999988765443
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.3e-39 Score=345.59 Aligned_cols=315 Identities=19% Similarity=0.228 Sum_probs=235.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHHHHHHHHHHHHc-CC---ceeEec
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGEFLS 109 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL~~qq~~~l~~~-gi---~~~~~~ 109 (545)
+|+|+|.++++.++.+ ++++.+|||+|||++++++++. ..+++|||+|+++|+.|+.+.+.++ ++ .+..++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 5999999999999999 9999999999999999988775 4789999999999999999999985 66 777777
Q ss_pred ccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 009048 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (545)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (545)
+............ ..+++++||+.+..... ........+++|||||||++.... .++ ..+..+..
T Consensus 88 g~~~~~~~~~~~~-------~~~ivv~T~~~l~~~~~----~~~~~~~~~~~vIiDEaH~~~~~~-~~~---~~~~~~~~ 152 (494)
T 1wp9_A 88 GEKSPEERSKAWA-------RAKVIVATPQTIENDLL----AGRISLEDVSLIVFDEAHRAVGNY-AYV---FIAREYKR 152 (494)
T ss_dssp SCSCHHHHHHHHH-------HCSEEEECHHHHHHHHH----TTSCCTTSCSEEEEETGGGCSTTC-HHH---HHHHHHHH
T ss_pred CCcchhhhhhhcc-------CCCEEEecHHHHHHHHh----cCCcchhhceEEEEECCcccCCCC-cHH---HHHHHHHh
Confidence 7776665443332 26788888887643211 122335568999999999997532 122 12233444
Q ss_pred hCCCcCEEEEEcCCCh--hhHHHHHHHhcCCCCeEEeccC-------CCCcceeeeec----------------------
Q 009048 190 YLPDVPILALTATAAP--KVQKDVMESLCLQNPLVLKSSF-------NRPNLFYEVRY---------------------- 238 (545)
Q Consensus 190 ~~~~~~~l~lTAT~~~--~~~~~i~~~l~~~~~~~~~~~~-------~r~ni~~~v~~---------------------- 238 (545)
..+..++++||||+.. ....++...++...+....... ......+....
T Consensus 153 ~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (494)
T 1wp9_A 153 QAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKP 232 (494)
T ss_dssp HCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999983 3445556666543222111000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 009048 239 -------------------------------------------------------------------------------- 238 (545)
Q Consensus 239 -------------------------------------------------------------------------------- 238 (545)
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (494)
T 1wp9_A 233 LAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGS 312 (494)
T ss_dssp HHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcccc
Confidence
Q ss_pred -------------------------ccchhhHHHHHHHHHHh----CCCccEEEEecchhhHHHHHHHHHhCCCcEEEec
Q 009048 239 -------------------------KDLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289 (545)
Q Consensus 239 -------------------------~~~~~~~~~~l~~~l~~----~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h 289 (545)
......++..+.+++.. ..+.++||||+++..++.+++.|.+.|+.+..+|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~ 392 (494)
T 1wp9_A 313 TKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFV 392 (494)
T ss_dssp CHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEe
Confidence 00112244455555554 5678999999999999999999999999999999
Q ss_pred C--------CCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEE
Q 009048 290 A--------GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (545)
Q Consensus 290 ~--------~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~ 361 (545)
| +++..+|..++++|.+|+.+|||||+++++|||+|++++||++++|.++..|+||+||+||.|+ |.++.+
T Consensus 393 g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l 471 (494)
T 1wp9_A 393 GQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIIL 471 (494)
T ss_dssp CSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEE
T ss_pred ccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEE
Confidence 9 9999999999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred eccccHHH
Q 009048 362 YGMDDRRR 369 (545)
Q Consensus 362 ~~~~d~~~ 369 (545)
+.+.+.+.
T Consensus 472 ~~~~t~ee 479 (494)
T 1wp9_A 472 MAKGTRDE 479 (494)
T ss_dssp EETTSHHH
T ss_pred EecCCHHH
Confidence 99886543
No 31
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=7e-41 Score=374.06 Aligned_cols=319 Identities=20% Similarity=0.192 Sum_probs=243.7
Q ss_pred hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHhcC---CCeEEEEcChHHHHH
Q 009048 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALME 92 (545)
Q Consensus 22 ~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g------~d~lv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~aL~~ 92 (545)
....+.+.+.+.+|| .|+++|.++++.++.+ .++++++|||||||++|++|++.. +..++|++||++|+.
T Consensus 353 ~~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 353 IEGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAI 431 (780)
T ss_dssp CCTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHH
T ss_pred CchHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHH
Confidence 334566666667999 7999999999999865 599999999999999999998753 789999999999999
Q ss_pred HHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 009048 93 NQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (545)
Q Consensus 93 qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (545)
|+.+.++++ |+.+..++++.....+...+..+..+. .+|+++||+.+. .......+++|||||+|
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll~---------~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ--IDVVIGTHALIQ---------EDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC--CCEEEECTTHHH---------HCCCCSCCCEEEEESCC
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHh---------hhhhccCCceEEecccc
Confidence 999998874 789999999998888887887777764 788899887542 23345678999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec-cCCCCcceeeeecccchhhHHH
Q 009048 169 CISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYA 247 (545)
Q Consensus 169 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~ni~~~v~~~~~~~~~~~ 247 (545)
++ |...|. .++...++.++++||||+.+.... ...++..+..++.. +..+..+...+.........+.
T Consensus 501 r~---g~~qr~------~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~ 569 (780)
T 1gm5_A 501 RF---GVKQRE------ALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYE 569 (780)
T ss_dssp CC--------C------CCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHH
T ss_pred hh---hHHHHH------HHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcceeeeeccCCCCcceEEEEeccchHHHHHH
Confidence 95 433221 233334578999999999887655 23333333333322 2334444433333322222333
Q ss_pred HHHHHHHhCCCccEEEEecch--------hhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc
Q 009048 248 DLCSVLKANGDTCAIVYCLER--------TTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (545)
Q Consensus 248 ~l~~~l~~~~~~~~IIf~~t~--------~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (545)
.+.+.+ ..+.+++|||+++ ..++.+++.|.+ .++.+..+||+|++.+|..++++|++|+++|||||+
T Consensus 570 ~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~ 647 (780)
T 1gm5_A 570 FVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT 647 (780)
T ss_dssp HHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS
T ss_pred HHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC
Confidence 333322 2456799999966 457888899988 478899999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEeCCCC-CHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 317 AFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
++++|||+|++++||++++|. +...|.||+||+||.|++|.|++++++.
T Consensus 648 vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 648 VIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp CCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred CCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 999999999999999999996 7899999999999999999999999853
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-40 Score=375.63 Aligned_cols=322 Identities=18% Similarity=0.197 Sum_probs=238.9
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHHcCCceeE
Q 009048 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (545)
Q Consensus 31 ~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~ 107 (545)
...|||. |+|+|.++++.+..|+++++++|||+|||++|.+|++. .++++||++|+++|+.|+.+.+++....+..
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgl 158 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 158 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEE
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEE
Confidence 4458887 99999999999999999999999999999999888764 5789999999999999999999985446666
Q ss_pred ecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 009048 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (545)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l 187 (545)
+.++... .+..+++++|||++...-+ ........+++|||||||++.+|+ +...+ ..+
T Consensus 159 ltGd~~~-------------~~~~~IvV~Tpe~L~~~L~----~~~~~l~~l~lVViDEaH~l~d~~--rg~~~---e~i 216 (1010)
T 2xgj_A 159 MTGDITI-------------NPDAGCLVMTTEILRSMLY----RGSEVMREVAWVIFDEVHYMRDKE--RGVVW---EET 216 (1010)
T ss_dssp ECSSCEE-------------CTTCSEEEEEHHHHHHHHH----HTCTTGGGEEEEEEETGGGGGCTT--THHHH---HHH
T ss_pred EeCCCcc-------------CCCCCEEEEcHHHHHHHHH----cCcchhhcCCEEEEechhhhcccc--hhHHH---HHH
Confidence 6654431 1247899999987643111 122234558999999999999886 33333 334
Q ss_pred HHhCC-CcCEEEEEcCCChhhHHHHHHHhc--CCCCeEEeccCCCCc-ceeeeec------------cc-----------
Q 009048 188 RNYLP-DVPILALTATAAPKVQKDVMESLC--LQNPLVLKSSFNRPN-LFYEVRY------------KD----------- 240 (545)
Q Consensus 188 ~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~--~~~~~~~~~~~~r~n-i~~~v~~------------~~----------- 240 (545)
...+| ++++++||||++... ++..+++ ...+..+.....+|. +...+.. ..
T Consensus 217 l~~l~~~~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1010)
T 2xgj_A 217 IILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAM 294 (1010)
T ss_dssp HHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHH
T ss_pred HHhcCCCCeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHH
Confidence 44444 789999999987643 2223222 122322222222221 1111000 00
Q ss_pred ------------------------ch-------hhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCc-----
Q 009048 241 ------------------------LL-------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS----- 284 (545)
Q Consensus 241 ------------------------~~-------~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~----- 284 (545)
.. ...+..+...+...+..++||||+++..|+.++..|...++.
T Consensus 295 ~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~ 374 (1010)
T 2xgj_A 295 ASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEK 374 (1010)
T ss_dssp HTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHH
T ss_pred HHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHH
Confidence 00 122334555555556668999999999999999999775442
Q ss_pred ----------------------------------EEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEE
Q 009048 285 ----------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (545)
Q Consensus 285 ----------------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~V 330 (545)
+..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++|
T Consensus 375 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vV 454 (1010)
T 2xgj_A 375 EALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 454 (1010)
T ss_dssp HHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEE
T ss_pred HHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEE
Confidence 7889999999999999999999999999999999999999999999
Q ss_pred EE----eCC----CCCHHHHHHHHhhccCCCC--CCeEEEEeccc-cHHHHHHHHHhc
Q 009048 331 CH----FNI----PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILSKN 377 (545)
Q Consensus 331 I~----~~~----p~s~~~y~Qr~GRagR~g~--~~~~i~~~~~~-d~~~~~~i~~~~ 377 (545)
|+ |+. |.|+..|+||+|||||.|. .|.|++++++. +...+..++...
T Consensus 455 I~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~ 512 (1010)
T 2xgj_A 455 FTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 512 (1010)
T ss_dssp ESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCC
T ss_pred EeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCC
Confidence 99 998 8999999999999999997 59999999876 666777776543
No 33
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=9.7e-40 Score=371.03 Aligned_cols=322 Identities=18% Similarity=0.247 Sum_probs=190.0
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEEcChHHHHHHHHHHHHHc-
Q 009048 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK- 101 (545)
Q Consensus 31 ~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~~~~lVi~P~~aL~~qq~~~l~~~- 101 (545)
...+|+..|||+|.++++.++.|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++
T Consensus 241 ~~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 241 PPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp -------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 34578999999999999999999999999999999999999998753 788999999999999999999886
Q ss_pred ---CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh-hh-ccCCccEEEEeccccccccCCC
Q 009048 102 ---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHD 176 (545)
Q Consensus 102 ---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~-~~-~~~~l~~iViDEaH~i~~~g~~ 176 (545)
++.+..++++.......... .. ..+|+++||+.+.. .+.. .. ....+++|||||||++...+.
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~---~~---~~~Ivv~Tp~~l~~-----~l~~~~~~~~~~~~~iViDEaH~~~~~~~- 388 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKV---IE---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNHP- 388 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHH---HH---TCSEEEECHHHHHH-----HHHSSSCCCGGGCSEEEETTGGGCSTTSH-
T ss_pred ccCCceEEEEeCCcchhhhHHHh---hC---CCCEEEEchHHHHH-----HHHhccccccccCCEEEEECccccCCCcc-
Confidence 88888888877544322111 11 36788898887532 1211 11 344579999999999987442
Q ss_pred CHHHHHHHHHHHHh-----CCCcCEEEEEcCCCh----------hhHHHHHHHhcCCCCeEE-------eccCCCCccee
Q 009048 177 FRPSYRKLSSLRNY-----LPDVPILALTATAAP----------KVQKDVMESLCLQNPLVL-------KSSFNRPNLFY 234 (545)
Q Consensus 177 fr~~~~~l~~l~~~-----~~~~~~l~lTAT~~~----------~~~~~i~~~l~~~~~~~~-------~~~~~r~ni~~ 234 (545)
++.... .+... .+..++++||||+.. .....+...++....... .....++...+
T Consensus 389 ~~~i~~---~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~ 465 (797)
T 4a2q_A 389 YNVLMT---RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDV 465 (797)
T ss_dssp HHHHHH---HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEE
T ss_pred HHHHHH---HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEE
Confidence 332222 22222 456889999999963 122233333332100000 00001111111
Q ss_pred eeecc---------------------------------------------------------------------------
Q 009048 235 EVRYK--------------------------------------------------------------------------- 239 (545)
Q Consensus 235 ~v~~~--------------------------------------------------------------------------- 239 (545)
.....
T Consensus 466 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 545 (797)
T 4a2q_A 466 RLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC 545 (797)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHH
T ss_pred EecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 00000
Q ss_pred ---------------------------------------------------------------cchhhHHHHHHHHHHh-
Q 009048 240 ---------------------------------------------------------------DLLDDAYADLCSVLKA- 255 (545)
Q Consensus 240 ---------------------------------------------------------------~~~~~~~~~l~~~l~~- 255 (545)
.....++..|.+++..
T Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~ 625 (797)
T 4a2q_A 546 TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 625 (797)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHH
Confidence 0001233444445543
Q ss_pred ---CCCccEEEEecchhhHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHHHc-CCCcEEEeccccc
Q 009048 256 ---NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFG 319 (545)
Q Consensus 256 ---~~~~~~IIf~~t~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VLVaT~a~~ 319 (545)
.++.++||||+++..++.++..|.+. |..+..+||+|++.+|..++++|++ |+++|||||++++
T Consensus 626 ~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~ 705 (797)
T 4a2q_A 626 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD 705 (797)
T ss_dssp HHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC--
T ss_pred hccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchh
Confidence 56689999999999999999999873 5566778999999999999999999 9999999999999
Q ss_pred cccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHH
Q 009048 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (545)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~ 369 (545)
+|||+|+|++||||++|.|+..|+||+|| ||. ++|.+++++...+...
T Consensus 706 ~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp -----CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred cCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 99999999999999999999999999999 999 7999999998877643
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.9e-40 Score=381.85 Aligned_cols=324 Identities=15% Similarity=0.217 Sum_probs=240.3
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHHHHHHHHHH
Q 009048 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGL 98 (545)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL~~qq~~~l 98 (545)
.+++.+.+.+.+||. | ++|.++|+.++.|+|++++||||||||+ |++|++. .++.+|||+||++|+.|+.+.+
T Consensus 43 ~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 43 LKEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp HHHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHH
Confidence 345668888889999 9 9999999999999999999999999998 8888875 4678999999999999999999
Q ss_pred HHc----CC----ceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccc
Q 009048 99 KEK----GI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (545)
Q Consensus 99 ~~~----gi----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (545)
+++ ++ .+..++++.....+......+.. .+|+++||+.+... +. .+..+++|||||||++
T Consensus 120 ~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~----~~IlV~TP~~L~~~-----l~---~L~~l~~lViDEah~~ 187 (1054)
T 1gku_B 120 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN----FKIVITTTQFLSKH-----YR---ELGHFDFIFVDDVDAI 187 (1054)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----CSEEEEEHHHHHHC-----ST---TSCCCSEEEESCHHHH
T ss_pred HHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----CCEEEEcHHHHHHH-----HH---HhccCCEEEEeChhhh
Confidence 874 45 67777777776665544444443 67888888755321 11 1456899999999999
Q ss_pred cccCCCCHHHHHHHHHHH----Hh-CCCcCEEEEEcCCChhhH---HHHHHH-hcCCCCeEEeccCCCCcceeeeecccc
Q 009048 171 SSWGHDFRPSYRKLSSLR----NY-LPDVPILALTATAAPKVQ---KDVMES-LCLQNPLVLKSSFNRPNLFYEVRYKDL 241 (545)
Q Consensus 171 ~~~g~~fr~~~~~l~~l~----~~-~~~~~~l~lTAT~~~~~~---~~i~~~-l~~~~~~~~~~~~~r~ni~~~v~~~~~ 241 (545)
.+||+++++.+..++-.. .. .+..+++++|||+++. . ..+... .... +.......+++...+..
T Consensus 188 l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~---v~~~~~~~~~i~~~~~~--- 260 (1054)
T 1gku_B 188 LKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFD---IGSSRITVRNVEDVAVN--- 260 (1054)
T ss_dssp HTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCC---CSCCEECCCCEEEEEES---
T ss_pred hhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEE---ccCcccCcCCceEEEec---
Confidence 999987777666553111 11 1367889999999886 2 122221 1111 01111223344433332
Q ss_pred hhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEe----ccc
Q 009048 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA----TVA 317 (545)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa----T~a 317 (545)
.++...|.++++.. +.++||||+|++.|+.++..|... +++..+||++. .+++.|++|+.+|||| |++
T Consensus 261 -~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv 332 (1054)
T 1gku_B 261 -DESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGT 332 (1054)
T ss_dssp -CCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC----
T ss_pred -hhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCe
Confidence 23344555666654 467999999999999999999988 99999999983 7789999999999999 999
Q ss_pred cccccccCCC-cEEEEeCCC------------------------------------------------------------
Q 009048 318 FGMGIDRKDV-RLVCHFNIP------------------------------------------------------------ 336 (545)
Q Consensus 318 ~~~GiD~p~v-~~VI~~~~p------------------------------------------------------------ 336 (545)
+++|||+|+| ++|||+++|
T Consensus 333 ~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 412 (1054)
T 1gku_B 333 LVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAK 412 (1054)
T ss_dssp --CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCS
T ss_pred eEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999996 999999999
Q ss_pred -----------CCHHHHHHHHhhccCCCCCC--eEEEEeccccHHHHHHHHHh
Q 009048 337 -----------KSMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSK 376 (545)
Q Consensus 337 -----------~s~~~y~Qr~GRagR~g~~~--~~i~~~~~~d~~~~~~i~~~ 376 (545)
.|..+|+||+|||||.|..| .++.++...|...++.+.+.
T Consensus 413 ~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~ 465 (1054)
T 1gku_B 413 DVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIER 465 (1054)
T ss_dssp SSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHH
T ss_pred ceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHH
Confidence 79999999999999987665 47777777777766655554
No 35
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6.4e-38 Score=344.30 Aligned_cols=321 Identities=19% Similarity=0.192 Sum_probs=234.3
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH----cC
Q 009048 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----KG 102 (545)
Q Consensus 30 l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~----~g 102 (545)
.++.+|+ .|+|+|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++||+||++|+.|..+.+.. +|
T Consensus 76 ~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 76 SRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3356899 89999999999999999 99999999999999999983 466899999999999988777655 68
Q ss_pred CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHH---HhhhccCCccEEEEecccccc-ccCCC--
Q 009048 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWGHD-- 176 (545)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~~g~~-- 176 (545)
+.+.++.++.....+...+ ..+|+|+||..+.-.-+...+ ........+.++||||||.|+ +.+..
T Consensus 153 l~v~~i~gg~~~~~r~~~~--------~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKREAY--------AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp CCEEECCTTSCHHHHHHHH--------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred CeEEEEeCCCCHHHHHHhc--------CCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 9999988888766544332 267888888766322222222 112335678999999999987 54311
Q ss_pred --------CHHHHHHHHHHHHhCC----------CcCEE-----------------EEEcCCCh---hh-----------
Q 009048 177 --------FRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KV----------- 207 (545)
Q Consensus 177 --------fr~~~~~l~~l~~~~~----------~~~~l-----------------~lTAT~~~---~~----------- 207 (545)
-...|..+..+...+| ..+++ ++|||.+. .+
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 0123445555555554 23333 45565432 11
Q ss_pred ----------------------------------------------------------------------------HHHH
Q 009048 208 ----------------------------------------------------------------------------QKDV 211 (545)
Q Consensus 208 ----------------------------------------------------------------------------~~~i 211 (545)
...+
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 1122
Q ss_pred HHHhcCCCCeEEeccCCCCcceee---eecccchhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCCCcEE
Q 009048 212 MESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (545)
Q Consensus 212 ~~~l~~~~~~~~~~~~~r~ni~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~ 286 (545)
...+++. ++..+.++|..... +.+. ...+++..|.+.+.. ..+.++||||+|++.++.|+..|.+.|+++.
T Consensus 385 ~~iY~l~---vv~IPtn~p~~r~d~~d~v~~-~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~ 460 (844)
T 1tf5_A 385 RNIYNMQ---VVTIPTNRPVVRDDRPDLIYR-TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQ 460 (844)
T ss_dssp HHHHCCC---EEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCE
T ss_pred HHHhCCc---eEEecCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 2222221 12223444443321 1122 235677777777654 2456899999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccC--------CCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeE
Q 009048 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358 (545)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p--------~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~ 358 (545)
.+||++.+.+|..+.+.++.| .|+|||+++|||+|++ ++.+||++++|.|.+.|.||+||+||.|.+|.+
T Consensus 461 vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 461 VLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp EECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred EeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999888887666666555 6999999999999999 788999999999999999999999999999999
Q ss_pred EEEeccccH
Q 009048 359 LLYYGMDDR 367 (545)
Q Consensus 359 i~~~~~~d~ 367 (545)
+.|++.+|.
T Consensus 539 ~~~vs~eD~ 547 (844)
T 1tf5_A 539 QFYLSMEDE 547 (844)
T ss_dssp EEEEETTSS
T ss_pred EEEecHHHH
Confidence 999998773
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=7.3e-38 Score=364.97 Aligned_cols=323 Identities=20% Similarity=0.191 Sum_probs=252.8
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHc----CC--CEEEEcCCCchHHHHHHHHHh---cCCCeEEEEcChH
Q 009048 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----GR--DCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLI 88 (545)
Q Consensus 18 ~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~----g~--d~lv~apTGsGKTl~~~lp~l---~~~~~~lVi~P~~ 88 (545)
.++.++..+.+.+...|||. ++|+|.++++.++. |+ |+++++|||+|||++|+++++ ..+..++|++||+
T Consensus 584 ~~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~ 662 (1151)
T 2eyq_A 584 FAFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 662 (1151)
T ss_dssp CCCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechH
Confidence 34566677888888889997 69999999999986 66 999999999999999987775 4578999999999
Q ss_pred HHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEE
Q 009048 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (545)
Q Consensus 89 aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iVi 164 (545)
+|+.|+.+.+++. ++.+..+++..+..........+..+. .+++++||+.+. .......+++|||
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~--~dIvV~T~~ll~---------~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK--IDILIGTHKLLQ---------SDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC--CSEEEECTHHHH---------SCCCCSSEEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHh---------CCccccccceEEE
Confidence 9999999999863 577888888888887777777777664 788999986553 2234566899999
Q ss_pred eccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc-CCCCcceeeeecccchh
Q 009048 165 DEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLLD 243 (545)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~ni~~~v~~~~~~~ 243 (545)
||||++ |... +.. +....++.++++||||+.+..... ...++.++.++... ..+..+...+.... ..
T Consensus 732 DEaH~~---g~~~---~~~---l~~l~~~~~vl~lSATp~p~~l~~--~~~~~~~~~~i~~~~~~r~~i~~~~~~~~-~~ 799 (1151)
T 2eyq_A 732 DEEHRF---GVRH---KER---IKAMRANVDILTLTATPIPRTLNM--AMSGMRDLSIIATPPARRLAVKTFVREYD-SM 799 (1151)
T ss_dssp ESGGGS---CHHH---HHH---HHHHHTTSEEEEEESSCCCHHHHH--HHTTTSEEEECCCCCCBCBCEEEEEEECC-HH
T ss_pred echHhc---ChHH---HHH---HHHhcCCCCEEEEcCCCChhhHHH--HHhcCCCceEEecCCCCccccEEEEecCC-HH
Confidence 999994 4222 122 333345788999999999887653 33444444443322 22333333333222 12
Q ss_pred hHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccc
Q 009048 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (545)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (545)
.....+...+. .+++++|||++++.++.+++.|++. +..+..+||+|++.+|..++++|.+|+++|||||+++++|
T Consensus 800 ~i~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~G 877 (1151)
T 2eyq_A 800 VVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 877 (1151)
T ss_dssp HHHHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGG
T ss_pred HHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceee
Confidence 22333333332 4568999999999999999999987 8899999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEeCC-CCCHHHHHHHHhhccCCCCCCeEEEEecccc
Q 009048 322 IDRKDVRLVCHFNI-PKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (545)
Q Consensus 322 iD~p~v~~VI~~~~-p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d 366 (545)
||+|++++||+++. +.++..|+||+||+||.|+.|.|++++.+.+
T Consensus 878 iDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 878 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp SCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred ecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999999999988 5699999999999999999999999997653
No 37
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.2e-38 Score=344.59 Aligned_cols=301 Identities=14% Similarity=0.085 Sum_probs=220.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHHHHHHHHHHHHcCC----ceeEec
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGI----AGEFLS 109 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL~~qq~~~l~~~gi----~~~~~~ 109 (545)
+|+|+|.++++.++.++++++++|||+|||++|++++.. ..+++|||+|+++|+.|+.+.+++++. .+..+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 699999999999999999999999999999999988875 345999999999999999999998643 445555
Q ss_pred ccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 009048 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (545)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (545)
++...... .....+|+++||+.+..... .....+++|||||||++.. ..+..+..
T Consensus 193 ~~~~~~~~---------~~~~~~I~i~T~~~l~~~~~-------~~~~~~~liIiDE~H~~~~---------~~~~~il~ 247 (510)
T 2oca_A 193 GGASKDDK---------YKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (510)
T ss_dssp GGCCTTGG---------GCTTCSEEEEEHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHGG
T ss_pred cCCccccc---------cccCCcEEEEeHHHHhhchh-------hhhhcCCEEEEECCcCCCc---------ccHHHHHH
Confidence 55433221 12347899999997665421 1223489999999999875 23444555
Q ss_pred hC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCC--------CCcceeeeecc-----------cc--------
Q 009048 190 YL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN--------RPNLFYEVRYK-----------DL-------- 241 (545)
Q Consensus 190 ~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~--------r~ni~~~v~~~-----------~~-------- 241 (545)
.+ +..++++||||++..... +....++..+.++..+.. .+.....+... ..
T Consensus 248 ~~~~~~~~l~lSATp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 248 GLNNCMFKFGLSGSLRDGKAN-IMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp GCTTCCEEEEEESCGGGCSSC-HHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred hcccCcEEEEEEeCCCCCccc-HHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 55 567899999999655322 122222222332222111 00000000000 00
Q ss_pred --hhhHHHHHHHHHHhC---CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEec-
Q 009048 242 --LDDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT- 315 (545)
Q Consensus 242 --~~~~~~~l~~~l~~~---~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT- 315 (545)
...+...+.+++... ++.++||||+ ++.++.+++.|.+.+..+..+||+++..+|..+++.|.+|+.+|||||
T Consensus 327 ~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 327 TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 011222344444332 4566777777 888999999999998899999999999999999999999999999999
Q ss_pred cccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
+++++|+|+|++++||++++|.|+..|+|++||+||.|+.+.++++|+..
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~ 455 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLI 455 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEE
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEee
Confidence 99999999999999999999999999999999999999887666666643
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.8e-37 Score=367.08 Aligned_cols=328 Identities=19% Similarity=0.217 Sum_probs=238.8
Q ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEEcChHHHHHHHHHHHHH-----cCC
Q 009048 35 GHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKE-----KGI 103 (545)
Q Consensus 35 g~~~~r~~Q~~~i~~il~g-~d~lv~apTGsGKTl~~~lp~l~-----~~~~~lVi~P~~aL~~qq~~~l~~-----~gi 103 (545)
+|+.|+|+|.++++.++.+ +++++.||||||||++|.+|++. .++++|+|+|+++|+.|.+..+++ .|+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 6889999999999999865 68999999999999999999874 367899999999999999999875 366
Q ss_pred ceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHH
Q 009048 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (545)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~ 183 (545)
.+..+.+......+ .. . +.+|+++|||.+.. ..+..........+++||+||+|++.+. ..+.+..
T Consensus 1003 ~V~~ltGd~~~~~~--~~---~----~~~IiV~TPEkld~--llr~~~~~~~l~~v~lvViDE~H~l~d~---rg~~le~ 1068 (1724)
T 4f92_B 1003 KVVLLTGETSTDLK--LL---G----KGNIIISTPEKWDI--LSRRWKQRKNVQNINLFVVDEVHLIGGE---NGPVLEV 1068 (1724)
T ss_dssp CEEECCSCHHHHHH--HH---H----HCSEEEECHHHHHH--HHTTTTTCHHHHSCSEEEECCGGGGGST---THHHHHH
T ss_pred EEEEEECCCCcchh--hc---C----CCCEEEECHHHHHH--HHhCcccccccceeeEEEeechhhcCCC---CCccHHH
Confidence 77776665443222 11 1 26799999996521 1111111112345899999999998763 3444443
Q ss_pred ----HHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec-cCCCCc-ceeeeeccc--chhhHH----HHHH
Q 009048 184 ----LSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPN-LFYEVRYKD--LLDDAY----ADLC 250 (545)
Q Consensus 184 ----l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~n-i~~~v~~~~--~~~~~~----~~l~ 250 (545)
+..+.... +++++|+||||++.. .++..+++......+.. +..||. +...+.... ...... ..+.
T Consensus 1069 il~rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~ 1146 (1724)
T 4f92_B 1069 ICSRMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVY 1146 (1724)
T ss_dssp HHHHHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHH
Confidence 33333333 478999999999764 57788888765544332 233443 222222111 111111 1122
Q ss_pred HHH-HhCCCccEEEEecchhhHHHHHHHHHhC----------------------------------CCcEEEecCCCCHH
Q 009048 251 SVL-KANGDTCAIVYCLERTTCDELSAYLSAG----------------------------------GISCAAYHAGLNDK 295 (545)
Q Consensus 251 ~~l-~~~~~~~~IIf~~t~~~~~~l~~~L~~~----------------------------------g~~~~~~h~~l~~~ 295 (545)
..+ +...++++||||+|++.|+.+|..|... ...++.|||||++.
T Consensus 1147 ~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~ 1226 (1724)
T 4f92_B 1147 HAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPM 1226 (1724)
T ss_dssp HHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHH
T ss_pred HHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHH
Confidence 222 3345678999999999999988776421 12578999999999
Q ss_pred HHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEE----------eCCCCCHHHHHHHHhhccCCCC--CCeEEEEec
Q 009048 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----------FNIPKSMEAFYQESGRAGRDQL--PSKSLLYYG 363 (545)
Q Consensus 296 ~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~----------~~~p~s~~~y~Qr~GRagR~g~--~~~~i~~~~ 363 (545)
+|..+++.|++|.++|||||+++++|||+|.+++||. ...|.++.+|.|++|||||.|. .|.|++++.
T Consensus 1227 ~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~ 1306 (1724)
T 4f92_B 1227 ERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQ 1306 (1724)
T ss_dssp HHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEec
Confidence 9999999999999999999999999999999999983 3357799999999999999997 689999999
Q ss_pred cccHHHHHHHHHhcc
Q 009048 364 MDDRRRMEFILSKNQ 378 (545)
Q Consensus 364 ~~d~~~~~~i~~~~~ 378 (545)
..+...++.++.+..
T Consensus 1307 ~~~~~~~~~ll~~~~ 1321 (1724)
T 4f92_B 1307 GSKKDFFKKFLYEPL 1321 (1724)
T ss_dssp GGGHHHHHHHTTSCB
T ss_pred chHHHHHHHHhCCCC
Confidence 999988888876543
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.3e-38 Score=335.62 Aligned_cols=284 Identities=13% Similarity=0.092 Sum_probs=206.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCE-EEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHHHHHHHHHHHHcCCceeEec
Q 009048 35 GHAQFRDKQLDAIQAVLSGRDC-FCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (545)
Q Consensus 35 g~~~~r~~Q~~~i~~il~g~d~-lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~ 109 (545)
|+.+++|.|+ +|+.+++++++ ++.+|||||||++|++|++. .++.+||++||++|+.|+.+.+... ......
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL--PIRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc--eeeeee
Confidence 7889999985 79999999887 88999999999999999864 4678999999999999999988643 322221
Q ss_pred ccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 009048 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (545)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (545)
..... ...+...+.++|+..+ ...+........+++|||||||++ +++ +......+ ..+.
T Consensus 78 ~~~~~-----------~~~~~~~i~~~t~~~l-----~~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~-~~~~ 137 (451)
T 2jlq_A 78 PAVKS-----------DHTGREIVDLMCHATF-----TTRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYI-STRV 137 (451)
T ss_dssp TTCSC-----------CCCSSCCEEEEEHHHH-----HHHHHHCSCCCCCSEEEEETTTCC-SHH--HHHHHHHH-HHHH
T ss_pred ccccc-----------cCCCCceEEEEChHHH-----HHHhhCcccccCCCEEEEeCCccC-Ccc--hHHHHHHH-HHhh
Confidence 11100 1122344555555433 233444455677999999999987 222 22222222 2233
Q ss_pred hCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchh
Q 009048 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269 (545)
Q Consensus 190 ~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~ 269 (545)
..++.++++||||+++.+.. +...++.++......|...+. .+..++... .+++||||+|++
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~------------~~~~~l~~~-~~~~lVF~~s~~ 199 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDP-----FPQSNSPIEDIEREIPERSWN------------TGFDWITDY-QGKTVWFVPSIK 199 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCS-----SCCCSSCEEEEECCCCSSCCS------------SSCHHHHHC-CSCEEEECSSHH
T ss_pred cCCCceEEEEccCCCccchh-----hhcCCCceEecCccCCchhhH------------HHHHHHHhC-CCCEEEEcCCHH
Confidence 45689999999999876533 112233333222222211110 112223333 458999999999
Q ss_pred hHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeC---------------
Q 009048 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN--------------- 334 (545)
Q Consensus 270 ~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~--------------- 334 (545)
.++.+++.|.+.|+.+..+|+++. ..+++.|++|+.+|||||+++++|||+|+ ++||+++
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -----CCCCHHHHHHHHhhccCCCC-CCeEEEEecc
Q 009048 335 -----IPKSMEAFYQESGRAGRDQL-PSKSLLYYGM 364 (545)
Q Consensus 335 -----~p~s~~~y~Qr~GRagR~g~-~~~~i~~~~~ 364 (545)
.|.|.++|+||+||+||.|. +|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8899888753
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=8.4e-38 Score=334.77 Aligned_cols=287 Identities=18% Similarity=0.169 Sum_probs=217.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCc-eeEecccccHHH
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~-~~~~~~~~~~~~ 116 (545)
.|+|+|.++++.+++++++++.+|||+|||++|+.++...+..+|||+|+++|+.|+.+.++++|+. +..++++...
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-- 170 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC--
Confidence 5899999999999999999999999999999999999888899999999999999999999999998 7777765431
Q ss_pred HHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCE
Q 009048 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (545)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 196 (545)
..+|+++||+.+.... ... ...+++|||||||++...+ |+. +...++..++
T Consensus 171 -------------~~~Ivv~T~~~l~~~~-----~~~--~~~~~liIvDEaH~~~~~~--~~~-------~~~~~~~~~~ 221 (472)
T 2fwr_A 171 -------------LKPLTVSTYDSAYVNA-----EKL--GNRFMLLIFDEVHHLPAES--YVQ-------IAQMSIAPFR 221 (472)
T ss_dssp -------------CCSEEEEEHHHHHHTH-----HHH--TTTCSEEEEETGGGTTSTT--THH-------HHHTCCCSEE
T ss_pred -------------cCCEEEEEcHHHHHHH-----HHh--cCCCCEEEEECCcCCCChH--HHH-------HHHhcCCCeE
Confidence 2578888887654321 111 1348999999999998754 432 4556678889
Q ss_pred EEEEcCCChhh------------------HHHHHHHhcCCCCeEE--eccCC-------------------CCcce----
Q 009048 197 LALTATAAPKV------------------QKDVMESLCLQNPLVL--KSSFN-------------------RPNLF---- 233 (545)
Q Consensus 197 l~lTAT~~~~~------------------~~~i~~~l~~~~~~~~--~~~~~-------------------r~ni~---- 233 (545)
++||||+.... ..++.. -.+..+... ..... ..++.
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAG-KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRA 300 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTS-CCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCC
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhc-CcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccch
Confidence 99999997321 111100 001111111 00000 00000
Q ss_pred --e--eee-----c---------------ccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEec
Q 009048 234 --Y--EVR-----Y---------------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289 (545)
Q Consensus 234 --~--~v~-----~---------------~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h 289 (545)
+ .+. . ......+...+.+++....+.++||||++++.++.+++.|. +..+|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~ 375 (472)
T 2fwr_A 301 EDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAIT 375 (472)
T ss_dssp SSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCC
T ss_pred hhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceee
Confidence 0 000 0 00112456677788887778899999999999999999883 56799
Q ss_pred CCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCC-CeEEEE
Q 009048 290 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP-SKSLLY 361 (545)
Q Consensus 290 ~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~-~~~i~~ 361 (545)
|+++..+|..+++.|++|+++|||||+++++|+|+|++++||++++|.|+..|+|++||+||.|+. +.+++|
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999965 455544
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.3e-37 Score=369.18 Aligned_cols=338 Identities=20% Similarity=0.221 Sum_probs=239.3
Q ss_pred HHHHHHHHHhc-CCCCCCHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHhc--------------CCCeEEEEcCh
Q 009048 24 EALVKLLRWHF-GHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA--------------KPGIVLVVSPL 87 (545)
Q Consensus 24 ~~l~~~l~~~f-g~~~~r~~Q~~~i~~il~-g~d~lv~apTGsGKTl~~~lp~l~--------------~~~~~lVi~P~ 87 (545)
.++....+..| ||..|+++|.++++.++. +++++++||||||||++|.+|++. .+.++|+|+|+
T Consensus 64 ~~Lp~~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 64 EKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp TTSCGGGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred HhcCHHHHHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 33444455566 799999999999999874 689999999999999999999873 24679999999
Q ss_pred HHHHHHHHHHHHH----cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEE
Q 009048 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (545)
Q Consensus 88 ~aL~~qq~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iV 163 (545)
+||++|+++.|++ +|+.+..+.++...... .....+|+++|||.+.. ..+..........+++||
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---------~~~~~~IlVtTpEkld~--llr~~~~~~~l~~v~~vI 212 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---------EISATQIIVCTPEKWDI--ITRKGGERTYTQLVRLII 212 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---------TGGGCSEEEECHHHHHH--HTTSSTTHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---------ccCCCCEEEECHHHHHH--HHcCCccchhhcCcCEEE
Confidence 9999999999876 57888777765543211 01237899999996421 000000111234589999
Q ss_pred EeccccccccCCCCHHHHHH--HHHH----HHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCC--eEEeccCCCCc-cee
Q 009048 164 IDEAHCISSWGHDFRPSYRK--LSSL----RNYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNRPN-LFY 234 (545)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~--l~~l----~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~--~~~~~~~~r~n-i~~ 234 (545)
|||+|.+.+ -|..... +.++ ....+++++|+||||+++. .++..+|+...+ ..+..+..||. +..
T Consensus 213 iDEvH~l~d----~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~RPvpL~~ 286 (1724)
T 4f92_B 213 LDEIHLLHD----DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNSFRPVPLEQ 286 (1724)
T ss_dssp ETTGGGGGS----TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGGGCSSCEEE
T ss_pred EecchhcCC----ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCCCccCccEE
Confidence 999998864 2433322 2222 2234688999999999763 567777765422 22222233432 222
Q ss_pred eeecc--cchhhHHHHH----HHHHHh-CCCccEEEEecchhhHHHHHHHHHhC--------------------------
Q 009048 235 EVRYK--DLLDDAYADL----CSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG-------------------------- 281 (545)
Q Consensus 235 ~v~~~--~~~~~~~~~l----~~~l~~-~~~~~~IIf~~t~~~~~~l~~~L~~~-------------------------- 281 (545)
.+... .........+ ...+.. ..++++||||+||+.|+.+|..|.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (1724)
T 4f92_B 287 TYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAE 366 (1724)
T ss_dssp ECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTS
T ss_pred EEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhc
Confidence 11111 1111122222 222222 34568999999999999999888631
Q ss_pred -----------CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEE----eC------CCCCHH
Q 009048 282 -----------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN------IPKSME 340 (545)
Q Consensus 282 -----------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~----~~------~p~s~~ 340 (545)
...++.+||||+.++|..+.+.|++|.++|||||+++++|||+|.+++||+ |+ .|.|+.
T Consensus 367 ~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~ 446 (1724)
T 4f92_B 367 QCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGAL 446 (1724)
T ss_dssp CCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHH
T ss_pred ccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHH
Confidence 124789999999999999999999999999999999999999999999996 44 356999
Q ss_pred HHHHHHhhccCCCC--CCeEEEEeccccHHHHHHHHHhcc
Q 009048 341 AFYQESGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKNQ 378 (545)
Q Consensus 341 ~y~Qr~GRagR~g~--~~~~i~~~~~~d~~~~~~i~~~~~ 378 (545)
+|.||+|||||.|. .|.++++....+......++....
T Consensus 447 ~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~ 486 (1724)
T 4f92_B 447 DILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQL 486 (1724)
T ss_dssp HHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCS
T ss_pred HHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCC
Confidence 99999999999885 689999999988877777766543
No 42
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3e-38 Score=348.69 Aligned_cols=285 Identities=13% Similarity=0.073 Sum_probs=201.0
Q ss_pred CCCHHHH-----HHHHHHH------cCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHHHHHHHHHHHHcC
Q 009048 38 QFRDKQL-----DAIQAVL------SGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKG 102 (545)
Q Consensus 38 ~~r~~Q~-----~~i~~il------~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL~~qq~~~l~~~g 102 (545)
.|+++|. ++|+.++ +++|++++||||||||++|++|++. .+.++||++||++|+.|+.+.++.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 7889999 9999888 8999999999999999999998874 46789999999999999999998765
Q ss_pred CceeEecccccHHHHHHHHHhhhcCCCCccEEEECccccc---Chh-hHHHHHhhhccCCccEEEEeccccccccCCCCH
Q 009048 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (545)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~---t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (545)
+.. ..... . .+.||..+. +.+ +...+........+++|||||||++. ..+.
T Consensus 295 i~~--~~~~l------------~--------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~---~~~~ 349 (673)
T 2wv9_A 295 VRY--LTPAV------------Q--------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD---PASI 349 (673)
T ss_dssp CEE--CCC-----------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC---HHHH
T ss_pred eee--ecccc------------c--------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccC---ccHH
Confidence 431 11000 0 034444322 222 22233333356779999999999982 1122
Q ss_pred HHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHHhCCC
Q 009048 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (545)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~ 258 (545)
.....+..+.. .++.++++||||+++.+.. ......+...... .+. ...... +...+.. .+
T Consensus 350 ~~~~~l~~~~~-~~~~~vl~~SAT~~~~i~~----~~~~~~~i~~v~~--------~~~-~~~~~~----~l~~l~~-~~ 410 (673)
T 2wv9_A 350 AARGYIATRVE-AGEAAAIFMTATPPGTSDP----FPDTNSPVHDVSS--------EIP-DRAWSS----GFEWITD-YA 410 (673)
T ss_dssp HHHHHHHHHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCEEEEEC--------CCC-SSCCSS----CCHHHHS-CC
T ss_pred HHHHHHHHhcc-ccCCcEEEEcCCCChhhhh----hcccCCceEEEee--------ecC-HHHHHH----HHHHHHh-CC
Confidence 22233333322 2578999999999876422 0011112111000 000 000011 1222333 35
Q ss_pred ccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEE------
Q 009048 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH------ 332 (545)
Q Consensus 259 ~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~------ 332 (545)
+++||||++++.++.+++.|.+.|+.+..+||+ +|..+++.|++|+++|||||+++++|||+| +++|||
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~ 485 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVK 485 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECC
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCccc
Confidence 689999999999999999999999999999994 789999999999999999999999999999 999998
Q ss_pred --------------eCCCCCHHHHHHHHhhccCC-CCCCeEEEEe---ccccHHHHH
Q 009048 333 --------------FNIPKSMEAFYQESGRAGRD-QLPSKSLLYY---GMDDRRRME 371 (545)
Q Consensus 333 --------------~~~p~s~~~y~Qr~GRagR~-g~~~~~i~~~---~~~d~~~~~ 371 (545)
+++|.|.++|+||+||+||. |++|.|++|+ ++.|...++
T Consensus 486 p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~ 542 (673)
T 2wv9_A 486 PTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAH 542 (673)
T ss_dssp EEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHH
T ss_pred ceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHH
Confidence 56999999999999999999 7899999996 455544443
No 43
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=6.2e-38 Score=332.20 Aligned_cols=277 Identities=13% Similarity=0.101 Sum_probs=189.2
Q ss_pred HHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhh
Q 009048 49 AVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDL 124 (545)
Q Consensus 49 ~il~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~ 124 (545)
.+++|+|++++||||||||++|++|++. .+..++|++||++|+.|+.+.++.+++.. ....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~~--~~~~------------- 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKF--HTQA------------- 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEE--ESSC-------------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeEE--eccc-------------
Confidence 3567899999999999999999988875 45689999999999999999988654331 1100
Q ss_pred hcCCCCccEEEECcccccC---hh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEE
Q 009048 125 DSGKPSLRLLYVTPELTAT---PG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200 (545)
Q Consensus 125 ~~~~~~~~il~~tpe~~~t---~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lT 200 (545)
.. .++||..+.. .+ +...+........+++|||||||++ + ..|...+..+..+.. .++.++++||
T Consensus 69 ------~~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~--~~~~~~~~~~~~~~~-~~~~~~l~~S 137 (440)
T 1yks_A 69 ------FS-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-D--PASIAARGWAAHRAR-ANESATILMT 137 (440)
T ss_dssp ------CC-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-S--HHHHHHHHHHHHHHH-TTSCEEEEEC
T ss_pred ------ce-eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-C--cchHHHHHHHHHHhc-cCCceEEEEe
Confidence 00 2556653321 12 2222333334677999999999998 2 223333333433332 3578999999
Q ss_pred cCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHh
Q 009048 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA 280 (545)
Q Consensus 201 AT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~ 280 (545)
||+++.+.. ......+.... . ..+. .......+ ..+... ++++||||++++.++.+++.|++
T Consensus 138 AT~~~~~~~----~~~~~~~~~~~-~-------~~~~-~~~~~~~~----~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~ 199 (440)
T 1yks_A 138 ATPPGTSDE----FPHSNGEIEDV-Q-------TDIP-SEPWNTGH----DWILAD-KRPTAWFLPSIRAANVMAASLRK 199 (440)
T ss_dssp SSCTTCCCS----SCCCSSCEEEE-E-------CCCC-SSCCSSSC----HHHHHC-CSCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCchhhh----hhhcCCCeeEe-e-------eccC-hHHHHHHH----HHHHhc-CCCEEEEeCCHHHHHHHHHHHHH
Confidence 999887532 11111111111 0 0000 00011111 222332 46899999999999999999999
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEE-------------------eCCCCCHHH
Q 009048 281 GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------------------FNIPKSMEA 341 (545)
Q Consensus 281 ~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~-------------------~~~p~s~~~ 341 (545)
.|+++..+|| ++|..+++.|++|+++|||||+++++|||+| +++||| ++.|.+.++
T Consensus 200 ~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~ 274 (440)
T 1yks_A 200 AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASS 274 (440)
T ss_dssp TTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHH
T ss_pred cCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHH
Confidence 9999999999 4688999999999999999999999999999 999997 889999999
Q ss_pred HHHHHhhccCC-CCCCeEEEEe---ccccHHHHHHHH
Q 009048 342 FYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEFIL 374 (545)
Q Consensus 342 y~Qr~GRagR~-g~~~~~i~~~---~~~d~~~~~~i~ 374 (545)
|+||+||+||. |.+|.|++|+ ++.|...++.+.
T Consensus 275 ~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~ 311 (440)
T 1yks_A 275 AAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLE 311 (440)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHH
T ss_pred HHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhh
Confidence 99999999998 6899999997 566655554443
No 44
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.6e-37 Score=340.68 Aligned_cols=308 Identities=13% Similarity=0.091 Sum_probs=211.7
Q ss_pred CChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHHHHHHH
Q 009048 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQV 95 (545)
Q Consensus 20 ~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL~~qq~ 95 (545)
+...+.+.+.|.. ....+.|+|..+++.+++|+|+++.||||||||++|++|++. .+.++||++||++|+.|+.
T Consensus 155 l~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~ 232 (618)
T 2whx_A 155 VTKSGDYVSAITQ--AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEME 232 (618)
T ss_dssp -------CEECBC--CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred ccchHHHHHHHhh--ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHH
Confidence 3344444444433 136677888778999999999999999999999999999874 4678999999999999999
Q ss_pred HHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChh-hHHHHHhhhccCCccEEEEeccccccccC
Q 009048 96 IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (545)
Q Consensus 96 ~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (545)
+.++... ......... ....+...+.++ +.+ +...+........+++|||||||++ +.
T Consensus 233 ~~l~~~~--v~~~~~~l~-----------~~~tp~~~i~~~------t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~- 291 (618)
T 2whx_A 233 EALRGLP--IRYQTPAVK-----------SDHTGREIVDLM------CHATFTTRLLSSTRVPNYNLIVMDEAHFT-DP- 291 (618)
T ss_dssp HHTTTSC--EEECCTTSS-----------CCCCSSSCEEEE------EHHHHHHHHHHCSSCCCCSEEEEESTTCC-SH-
T ss_pred HHhcCCc--eeEecccce-----------eccCCCceEEEE------ChHHHHHHHhccccccCCeEEEEECCCCC-Cc-
Confidence 8887432 221111000 011122222222 222 2223333344677999999999998 32
Q ss_pred CCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHH
Q 009048 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (545)
Q Consensus 175 ~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~ 254 (545)
.|...+..+..... .++.++++||||++..+.. +.-.++..+......+. . .+..+...+.
T Consensus 292 -~~~~~~~~i~~~l~-~~~~q~il~SAT~~~~~~~-----~~~~~~~~~~v~~~~~~--------~----~~~~ll~~l~ 352 (618)
T 2whx_A 292 -CSVAARGYISTRVE-MGEAAAIFMTATPPGSTDP-----FPQSNSPIEDIEREIPE--------R----SWNTGFDWIT 352 (618)
T ss_dssp -HHHHHHHHHHHHHH-HTSCEEEEECSSCTTCCCS-----SCCCSSCEEEEECCCCS--------S----CCSSSCHHHH
T ss_pred -cHHHHHHHHHHHhc-ccCccEEEEECCCchhhhh-----hhccCCceeeecccCCH--------H----HHHHHHHHHH
Confidence 25555444443332 1578999999999877432 11123332222211111 0 0111222333
Q ss_pred hCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEE----
Q 009048 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV---- 330 (545)
Q Consensus 255 ~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~V---- 330 (545)
.. .+++||||+|++.++.+++.|.+.|+.+..+||+ +|..+++.|++|+.+|||||+++++|||+| |++|
T Consensus 353 ~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 353 DY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp HC-CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred hC-CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 33 5589999999999999999999999999999984 688899999999999999999999999997 9888
Q ss_pred ----------------EEeCCCCCHHHHHHHHhhccCCCC-CCeEEEEec---cccHHHHHHHHH
Q 009048 331 ----------------CHFNIPKSMEAFYQESGRAGRDQL-PSKSLLYYG---MDDRRRMEFILS 375 (545)
Q Consensus 331 ----------------I~~~~p~s~~~y~Qr~GRagR~g~-~~~~i~~~~---~~d~~~~~~i~~ 375 (545)
|+++.|.|.++|+||+||+||.|. +|.|++|+. +.|...+..+..
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~ 491 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEA 491 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHH
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHh
Confidence 777889999999999999999975 899999997 666555554443
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2.3e-34 Score=315.51 Aligned_cols=326 Identities=17% Similarity=0.135 Sum_probs=238.7
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH----
Q 009048 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (545)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~---- 100 (545)
.+.++.+|+ .++++|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++||+|++.|+.|..+.+..
T Consensus 102 Ea~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 102 EAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 455578899 79999999999999998 99999999999999999963 466799999999999887777655
Q ss_pred cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHH---HhhhccCCccEEEEecccccc-ccC--
Q 009048 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWG-- 174 (545)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~~g-- 174 (545)
+|+.+.++.++.....+...+ ..+|+|+||..+.-.-+...+ ........+.++||||||.++ +.+
T Consensus 179 lGLsv~~i~gg~~~~~r~~~y--------~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeart 250 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRVAY--------NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEART 250 (922)
T ss_dssp TTCCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGS
T ss_pred cCCeEEEEeCCCCHHHHHHhc--------CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcc
Confidence 689999998888766554433 267888888765322212211 112345668999999999987 322
Q ss_pred --------CCCHHHHHHHHHHHHhCC----------CcCEE-----------------EEEcCCCh---hhHHHHHHH-h
Q 009048 175 --------HDFRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQKDVMES-L 215 (545)
Q Consensus 175 --------~~fr~~~~~l~~l~~~~~----------~~~~l-----------------~lTAT~~~---~~~~~i~~~-l 215 (545)
.+-...|..+..+...+| ..+++ ++|||.++ .+...+... +
T Consensus 251 PLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l 330 (922)
T 1nkt_A 251 PLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKEL 330 (922)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHH
T ss_pred ceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHH
Confidence 111345667777777775 34455 67788764 221111111 1
Q ss_pred cCCC-------Ce-------------------------------------------------------------------
Q 009048 216 CLQN-------PL------------------------------------------------------------------- 221 (545)
Q Consensus 216 ~~~~-------~~------------------------------------------------------------------- 221 (545)
...+ ..
T Consensus 331 ~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~ 410 (922)
T 1nkt_A 331 FSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAA 410 (922)
T ss_dssp CCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHH
Confidence 0000 00
Q ss_pred ---------EEeccCCCCcceee---eecccchhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCCCcEEE
Q 009048 222 ---------VLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (545)
Q Consensus 222 ---------~~~~~~~r~ni~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~ 287 (545)
++..+.++|..... +.+. ...+++..|...+.. ..+.++||||+|++.++.|+..|.+.|+++..
T Consensus 411 Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~-t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~v 489 (922)
T 1nkt_A 411 ELHEIYKLGVVSIPTNMPMIREDQSDLIYK-TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNV 489 (922)
T ss_dssp HHHHHHCCEEEECCCSSCCCCEECCCEEES-CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHhCCCeEEeCCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 11112222222111 1111 235677777776644 24568999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCC----------------------------------------
Q 009048 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV---------------------------------------- 327 (545)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v---------------------------------------- 327 (545)
+||++...++..+.+.|+.| .|+|||+++|+|+|++.+
T Consensus 490 Lnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (922)
T 1nkt_A 490 LNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEA 567 (922)
T ss_dssp ECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred ecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 99999888888888888777 699999999999999975
Q ss_pred ------------cEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccH
Q 009048 328 ------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (545)
Q Consensus 328 ------------~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~ 367 (545)
.+||+++.|.|...|.|++||+||.|.+|.++.|++.+|.
T Consensus 568 ~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 568 SKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp THHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999998875
No 46
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3e-35 Score=322.22 Aligned_cols=322 Identities=17% Similarity=0.137 Sum_probs=219.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH----
Q 009048 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (545)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~---- 100 (545)
.+.++.+|. .++|+|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++|++||++|+.|..+.+..
T Consensus 65 ea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 65 EASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 445567887 69999999999999998 99999999999999999973 466799999999999988777665
Q ss_pred cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHH---HhhhccCCccEEEEecccccc-ccCCC
Q 009048 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWGHD 176 (545)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~~g~~ 176 (545)
+|+.+..+.++.....+.... ..+|+|+||-.+.-.-+...+ ........+.++||||||.++ +.|..
T Consensus 142 lgl~v~~i~GG~~~~~r~~~~--------~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~t 213 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPAKREAY--------AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEART 213 (853)
T ss_dssp TTCCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTC
T ss_pred cCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcc
Confidence 589999988888765443322 267877777654211111111 112334678999999999988 43310
Q ss_pred ----------CHHHHHHHHHHHHhCC---------------------CcCEE------------------------EEEc
Q 009048 177 ----------FRPSYRKLSSLRNYLP---------------------DVPIL------------------------ALTA 201 (545)
Q Consensus 177 ----------fr~~~~~l~~l~~~~~---------------------~~~~l------------------------~lTA 201 (545)
-...|..+..+...+| ..+++ ++||
T Consensus 214 pLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsa 293 (853)
T 2fsf_A 214 PLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 293 (853)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred cccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCc
Confidence 0012333333333332 12221 6677
Q ss_pred CCCh---hhHH---------------------------------------------------------------------
Q 009048 202 TAAP---KVQK--------------------------------------------------------------------- 209 (545)
Q Consensus 202 T~~~---~~~~--------------------------------------------------------------------- 209 (545)
|.++ .+..
T Consensus 294 t~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyf 373 (853)
T 2fsf_A 294 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYF 373 (853)
T ss_dssp ---------------------------------------------------------------CCCCCEEEEEEEHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHH
Confidence 7543 1100
Q ss_pred ------------------HHHHHhcCCCCeEEeccCCCCcceeee---ecccchhhHHHHHHHHHHh--CCCccEEEEec
Q 009048 210 ------------------DVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCL 266 (545)
Q Consensus 210 ------------------~i~~~l~~~~~~~~~~~~~r~ni~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~ 266 (545)
.+...++ ..++..+.++|...... .+. ...+++..|.+.+.. ..+.++||||+
T Consensus 374 r~Y~kl~GmTGTa~te~~ef~~iY~---l~vv~IPtn~p~~R~d~~d~v~~-~~~~K~~al~~~i~~~~~~gqpvLVft~ 449 (853)
T 2fsf_A 374 RLYEKLAGMTGTADTEAFEFSSIYK---LDTVVVPTNRPMIRKDLPDLVYM-TEAEKIQAIIEDIKERTAKGQPVLVGTI 449 (853)
T ss_dssp TTSSEEEEEECTTCCCHHHHHHHHC---CEEEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred hhhhhhhcCCCCchhHHHHHHHHhC---CcEEEcCCCCCceeecCCcEEEe-CHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 0000000 01112223333332211 112 235678888877754 35678999999
Q ss_pred chhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCC-------------------
Q 009048 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV------------------- 327 (545)
Q Consensus 267 t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v------------------- 327 (545)
|++.++.|+..|.+.|+++..+||++.+.++..+.++|+.| .|+|||+++|||+|++..
T Consensus 450 sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~ 527 (853)
T 2fsf_A 450 SIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIE 527 (853)
T ss_dssp SHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHH
T ss_pred cHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHH
Confidence 99999999999999999999999999988988888888888 699999999999999973
Q ss_pred ------------------cEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEecccc
Q 009048 328 ------------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (545)
Q Consensus 328 ------------------~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d 366 (545)
.+||+++.|.|...|.|++||+||.|.+|.++.|++.+|
T Consensus 528 ~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999999887
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.7e-36 Score=330.29 Aligned_cols=277 Identities=22% Similarity=0.207 Sum_probs=204.0
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHH-cCCceeEecccccHHHH
Q 009048 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVK 117 (545)
Q Consensus 39 ~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~-~gi~~~~~~~~~~~~~~ 117 (545)
+++.|.++++.+.++++++++||||||||++|.+|++..+.++||++||++|+.|..+.+.+ ++.......+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~---- 293 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT---- 293 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE----
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe----
Confidence 56678888888888899999999999999999999999888999999999999999888865 5666555444322
Q ss_pred HHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEE
Q 009048 118 TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197 (545)
Q Consensus 118 ~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l 197 (545)
.....+|+++||+.+.. ........+++|||||||++.. +|+..+..+.......+...++
T Consensus 294 ---------~~~~~~IlV~TPGrLl~-------~~~l~l~~l~~lVlDEAH~l~~---~~~~~l~~Il~~l~~~~~~lli 354 (666)
T 3o8b_A 294 ---------ITTGAPVTYSTYGKFLA-------DGGCSGGAYDIIICDECHSTDS---TTILGIGTVLDQAETAGARLVV 354 (666)
T ss_dssp ---------ECCCCSEEEEEHHHHHH-------TTSCCTTSCSEEEETTTTCCSH---HHHHHHHHHHHHTTTTTCSEEE
T ss_pred ---------ccCCCCEEEECcHHHHh-------CCCcccCcccEEEEccchhcCc---cHHHHHHHHHHhhhhcCCceEE
Confidence 12347888888887521 1223345589999999998653 3665555554444333334478
Q ss_pred EEEcCCChhhHHHHHHHhcCCCCeEEe--ccCCCCcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHH
Q 009048 198 ALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (545)
Q Consensus 198 ~lTAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~ 275 (545)
++|||++..+ ....+.+.. ...... +.+...... +.....+++||||+|++.++.++
T Consensus 355 l~SAT~~~~i--------~~~~p~i~~v~~~~~~~-i~~~~~~~~------------l~~~~~~~vLVFv~Tr~~ae~la 413 (666)
T 3o8b_A 355 LATATPPGSV--------TVPHPNIEEVALSNTGE-IPFYGKAIP------------IEAIRGGRHLIFCHSKKKCDELA 413 (666)
T ss_dssp EEESSCTTCC--------CCCCTTEEEEECBSCSS-EEETTEEEC------------GGGSSSSEEEEECSCHHHHHHHH
T ss_pred EECCCCCccc--------ccCCcceEEEeecccch-hHHHHhhhh------------hhhccCCcEEEEeCCHHHHHHHH
Confidence 8899998742 122222211 111111 111000000 12235678999999999999999
Q ss_pred HHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEE----------EeC-----------
Q 009048 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----------HFN----------- 334 (545)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI----------~~~----------- 334 (545)
+.|++.|+.+..+||+|++++ |.++..+|||||+++++|||+| |++|| |||
T Consensus 414 ~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~ 485 (666)
T 3o8b_A 414 AKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTT 485 (666)
T ss_dssp HHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEE
T ss_pred HHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccccc
Confidence 999999999999999999875 4566679999999999999996 99999 566
Q ss_pred CCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHH
Q 009048 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (545)
Q Consensus 335 ~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~ 369 (545)
+|.|.++|+||+||+|| |.+|. +.||.+.|...
T Consensus 486 ~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 486 VPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred CcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 88999 99998876543
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.4e-35 Score=332.99 Aligned_cols=327 Identities=17% Similarity=0.158 Sum_probs=235.2
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHhc------C--CCeEEEE
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA------K--PGIVLVV 84 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~-g~d~lv~apTGsGKTl~~~lp~l~------~--~~~~lVi 84 (545)
...|..+++++.+.+.++.. | ..|.+.|.++|..++. +++++++||||+|||+ ++|++. . +..++|+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCccccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 45688888899999999875 5 5678889888877775 5679999999999998 455442 1 4569999
Q ss_pred cChHHHHHHHHHHHHH-cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEE
Q 009048 85 SPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (545)
Q Consensus 85 ~P~~aL~~qq~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iV 163 (545)
+|+++|+.|+.+.+.. ++.......+.... .. .......+|+++||+++.. .+........+++||
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~------~~--~~~~~~~~I~v~T~G~l~r-----~l~~~~~l~~~~~lI 213 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIR------FE--NKTSNKTILKYMTDGMLLR-----EAMEDHDLSRYSCII 213 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEET------TE--EECCTTCSEEEEEHHHHHH-----HHHHSTTCTTEEEEE
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceec------cc--cccCCCCCEEEECHHHHHH-----HHhhCccccCCCEEE
Confidence 9999999999888755 44433221111000 00 0112346787777765432 222233466799999
Q ss_pred Eecccc-ccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecc---
Q 009048 164 IDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--- 239 (545)
Q Consensus 164 iDEaH~-i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~--- 239 (545)
|||||. ..+ ....+..+..+....++.+++++|||++... +...++ ..+.+...+... .+...+...
T Consensus 214 lDEah~R~ld----~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~---l~~~~~-~~~vi~v~gr~~-pv~~~~~~~~~~ 284 (773)
T 2xau_A 214 LDEAHERTLA----TDILMGLLKQVVKRRPDLKIIIMSATLDAEK---FQRYFN-DAPLLAVPGRTY-PVELYYTPEFQR 284 (773)
T ss_dssp ECSGGGCCHH----HHHHHHHHHHHHHHCTTCEEEEEESCSCCHH---HHHHTT-SCCEEECCCCCC-CEEEECCSSCCS
T ss_pred ecCccccccc----hHHHHHHHHHHHHhCCCceEEEEeccccHHH---HHHHhc-CCCcccccCccc-ceEEEEecCCch
Confidence 999996 322 1112344555666778899999999997643 333332 233332222221 222222211
Q ss_pred cchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHh-----------CCCcEEEecCCCCHHHHHHHHHHHH---
Q 009048 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-----------GGISCAAYHAGLNDKARSSVLDDWI--- 305 (545)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~-----------~g~~~~~~h~~l~~~~R~~~~~~f~--- 305 (545)
+.....+..+..++.....+++||||+++++++.++..|.+ .++.+..+||+|++++|..+++.|.
T Consensus 285 ~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~ 364 (773)
T 2xau_A 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH 364 (773)
T ss_dssp CHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCS
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccccc
Confidence 11223344555555555678999999999999999999985 5788999999999999999999999
Q ss_pred --cCCCcEEEeccccccccccCCCcEEEEeCC------------------CCCHHHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 306 --SSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 306 --~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
+|..+|||||+++++|||+|+|++||++++ |.|.++|+||+|||||. .+|.|+.+|++.
T Consensus 365 ~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 365 NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp SSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred CCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 999999999999999999999999999888 89999999999999999 699999999877
Q ss_pred cH
Q 009048 366 DR 367 (545)
Q Consensus 366 d~ 367 (545)
+.
T Consensus 444 ~~ 445 (773)
T 2xau_A 444 AF 445 (773)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=9.2e-37 Score=325.05 Aligned_cols=269 Identities=14% Similarity=0.113 Sum_probs=186.8
Q ss_pred HHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHH
Q 009048 47 IQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122 (545)
Q Consensus 47 i~~il~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~ 122 (545)
...+.+++++++.||||||||++|++|++. .+..+||++|+++|+.|+.+.++.. ............
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~~~------- 85 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL--PVRYQTSAVQRE------- 85 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS--CEEECC-------------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc--eEeEEecccccC-------
Confidence 444567889999999999999999999885 5778999999999999999998743 332222111000
Q ss_pred hhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccc-----cccCCCCHHHHHHHHHHHHhCCCcCEE
Q 009048 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-----SSWGHDFRPSYRKLSSLRNYLPDVPIL 197 (545)
Q Consensus 123 ~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i-----~~~g~~fr~~~~~l~~l~~~~~~~~~l 197 (545)
..+...+.+++... +...+........+++|||||||++ ..+| .+. .+...++.+++
T Consensus 86 ----~t~~~~i~~~~~~~-----l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~--------~~~-~~~~~~~~~~i 147 (459)
T 2z83_A 86 ----HQGNEIVDVMCHAT-----LTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARG--------YIA-TKVELGEAAAI 147 (459)
T ss_dssp ------CCCSEEEEEHHH-----HHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHH--------HHH-HHHHTTSCEEE
T ss_pred ----CCCCcEEEEEchHH-----HHHHhhccccccCCcEEEEECCccCCchhhHHHH--------HHH-HHhccCCccEE
Confidence 11222233333222 2333433345667999999999984 2222 111 12234689999
Q ss_pred EEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHH
Q 009048 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAY 277 (545)
Q Consensus 198 ~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~ 277 (545)
+||||++..+.. ......|...... ..+. .. +..+..++... .+++||||++++.++.+++.
T Consensus 148 l~SAT~~~~~~~----~~~~~~pi~~~~~-~~~~--------~~----~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 148 FMTATPPGTTDP----FPDSNAPIHDLQD-EIPD--------RA----WSSGYEWITEY-AGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp EECSSCTTCCCS----SCCCSSCEEEEEC-CCCS--------SC----CSSCCHHHHHC-CSCEEEECSCHHHHHHHHHH
T ss_pred EEEcCCCcchhh----hccCCCCeEEecc-cCCc--------ch----hHHHHHHHHhc-CCCEEEEeCChHHHHHHHHH
Confidence 999999876421 1111223322110 0000 00 00111223333 56899999999999999999
Q ss_pred HHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEE--------------------eCCCC
Q 009048 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH--------------------FNIPK 337 (545)
Q Consensus 278 L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~--------------------~~~p~ 337 (545)
|...|+.+..+||. +|..+++.|++|+.+|||||+++++|||+|+ ++||+ |+.|.
T Consensus 210 L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~ 284 (459)
T 2z83_A 210 LQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI 284 (459)
T ss_dssp HHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC
T ss_pred HHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC
Confidence 99999999999995 6788899999999999999999999999999 99999 67999
Q ss_pred CHHHHHHHHhhccCCCC-CCeEEEEeccc
Q 009048 338 SMEAFYQESGRAGRDQL-PSKSLLYYGMD 365 (545)
Q Consensus 338 s~~~y~Qr~GRagR~g~-~~~~i~~~~~~ 365 (545)
|.++|+||+|||||.|. +|.|++|+.+.
T Consensus 285 s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 285 TSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999999999997 99999999875
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=8.5e-35 Score=320.02 Aligned_cols=305 Identities=18% Similarity=0.188 Sum_probs=195.0
Q ss_pred CCCHHHHHHHHHHHc----C-CCEEEEcCCCchHHHHHHHHHh---c---------CCCeEEEEcChHHHHHHHH-HHHH
Q 009048 38 QFRDKQLDAIQAVLS----G-RDCFCLMPTGGGKSMCYQIPAL---A---------KPGIVLVVSPLIALMENQV-IGLK 99 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~----g-~d~lv~apTGsGKTl~~~lp~l---~---------~~~~~lVi~P~~aL~~qq~-~~l~ 99 (545)
.+||+|.++++.+++ + +++++++|||+|||++++..+. . ..+++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 599999999999875 4 5689999999999998654432 1 4578999999999999999 7788
Q ss_pred HcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHH
Q 009048 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (545)
Q Consensus 100 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~ 179 (545)
.++.....+.+.. .....+|+++||+.+........+........+++|||||||++...+
T Consensus 258 ~~~~~~~~~~~~~--------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~----- 318 (590)
T 3h1t_A 258 PFGDARHKIEGGK--------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD----- 318 (590)
T ss_dssp TTCSSEEECCC----------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------
T ss_pred hcchhhhhhhccC--------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-----
Confidence 8877655544221 123478999999987653211111222334558999999999987643
Q ss_pred HHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEE-e------ccCCCCcceeeeec--------------
Q 009048 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-K------SSFNRPNLFYEVRY-------------- 238 (545)
Q Consensus 180 ~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~-~------~~~~r~ni~~~v~~-------------- 238 (545)
+..+..+...+++.++++||||+......+....++. +... . ..+..+...+.+..
T Consensus 319 -~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~--~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (590)
T 3h1t_A 319 -NSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGN--PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDV 395 (590)
T ss_dssp ----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCS--CSEEECHHHHHHHTSSCCEEEEEEEETTCC----------
T ss_pred -hHHHHHHHHhCCcceEEEeccccccccchhHHHHcCC--ceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccc
Confidence 1334556677788889999999986655444444432 1100 0 00011100000000
Q ss_pred --------------cc---------chhhHHHHHHHHHHh-CCCccEEEEecchhhHHHHHHHHHhCCC--------cEE
Q 009048 239 --------------KD---------LLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGI--------SCA 286 (545)
Q Consensus 239 --------------~~---------~~~~~~~~l~~~l~~-~~~~~~IIf~~t~~~~~~l~~~L~~~g~--------~~~ 286 (545)
.. ........+.+++.. ...+++||||++++.|+.++..|.+.+. .+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 475 (590)
T 3h1t_A 396 DRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVA 475 (590)
T ss_dssp -------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEE
T ss_pred cccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEE
Confidence 00 001112234444443 3457899999999999999999987543 277
Q ss_pred EecCCCCHHHHHHHHHHHHcCCCc---EEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCC--CCeEEEE
Q 009048 287 AYHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL--PSKSLLY 361 (545)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~---VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~--~~~~i~~ 361 (545)
.+||.++. +|..++++|++|+.+ |||||+++++|||+|++++||++++|.|+..|+|++||+||.+. .+..+++
T Consensus 476 ~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I 554 (590)
T 3h1t_A 476 RVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNI 554 (590)
T ss_dssp ECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEE
T ss_pred EEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEE
Confidence 88998754 799999999998766 88999999999999999999999999999999999999999875 3444455
Q ss_pred eccc
Q 009048 362 YGMD 365 (545)
Q Consensus 362 ~~~~ 365 (545)
++.-
T Consensus 555 ~D~~ 558 (590)
T 3h1t_A 555 IDYT 558 (590)
T ss_dssp EECS
T ss_pred EecC
Confidence 5443
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.2e-35 Score=313.89 Aligned_cols=267 Identities=15% Similarity=0.115 Sum_probs=181.4
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHh----cCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcC
Q 009048 52 SGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp~l----~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (545)
+|+++++++|||||||++|++|++ ..+.+++|++||++|+.|+.+.+. |+.+....+.... ..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~~-----------~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQS-----------ER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC-------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCccc-----------cC
Confidence 478999999999999999988887 456799999999999999888876 4444433322110 11
Q ss_pred CCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 128 ~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
.+...+.+++...+ ...+........+++|||||||++..+ +......+..+. ..++.++++||||+++.+
T Consensus 68 ~~~~~~~~~~~~~l-----~~~l~~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 68 TGNEIVDFMCHSTF-----TMKLLQGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRV-SMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp -CCCSEEEEEHHHH-----HHHHHHTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEEESSCTTCC
T ss_pred CCCceEEEEchHHH-----HHHHhcCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHh-hCCCCcEEEEeCCCCcch
Confidence 11222333332222 223333444677999999999997432 222222333322 236899999999998753
Q ss_pred HHHHHHHhcCCCCeEEeccCCCCcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEE
Q 009048 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (545)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~ 287 (545)
.. +....+.+.... .... ...+..+..++... ++++||||++++.++.+++.|++.|+.+..
T Consensus 139 ~~-----~~~~~~~i~~~~---------~~~~---~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 139 EA-----FPPSNSPIIDEE---------TRIP---DKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CS-----SCCCSSCCEEEE---------CCCC---SSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hh-----hcCCCCceeecc---------ccCC---HHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 21 111111111100 0000 00111222334443 457999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcE-----------------EEEeCCCCCHHHHHHHHhhcc
Q 009048 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL-----------------VCHFNIPKSMEAFYQESGRAG 350 (545)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~-----------------VI~~~~p~s~~~y~Qr~GRag 350 (545)
+||+ +|..+++.|++|+++|||||+++++|||+| +.+ ||+++.|.+.++|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 654 678899999999999999999
Q ss_pred CCCCCCeEEEEec
Q 009048 351 RDQLPSKSLLYYG 363 (545)
Q Consensus 351 R~g~~~~~i~~~~ 363 (545)
|.|..+.++++|.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9996555555543
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=5.6e-34 Score=328.06 Aligned_cols=316 Identities=17% Similarity=0.181 Sum_probs=227.2
Q ss_pred CCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhc---C--CCeEEEEcChHHHHHHHHHHH-HHcCCceeEe
Q 009048 37 AQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGL-KEKGIAGEFL 108 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~lp~l~---~--~~~~lVi~P~~aL~~qq~~~l-~~~gi~~~~~ 108 (545)
-+|+|+|.+++..++.. ..+++.++||+|||++++..+.. . .+++|||+|+ +|+.||...+ +.+++++..+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 36899999999998864 47899999999999987765532 3 3489999999 9999999999 4588877766
Q ss_pred cccccHHHHHHHHHhhhcCCCCccEEEECcccccCh-hhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 009048 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (545)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~-~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l 187 (545)
++..... ............+++++|++.+... .....+. ...+++|||||||++..++......|..+..+
T Consensus 231 ~~~~~~~----~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~----~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L 302 (968)
T 3dmq_A 231 DDERYAE----AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLC----EAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL 302 (968)
T ss_dssp CHHHHHH----HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHH----TSCCCEEEECCSSCCCCBTTBCCHHHHHHHHH
T ss_pred ccchhhh----hhhhcccccccCCEEEEcHHHHhhCHHHHHHhh----hcCCCEEEehhhHhhcCCCCcchHHHHHHHHH
Confidence 5432211 1111112223468999999987543 2222222 23589999999999987765555556666666
Q ss_pred HHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCe----------------------------------------------
Q 009048 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPL---------------------------------------------- 221 (545)
Q Consensus 188 ~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~---------------------------------------------- 221 (545)
... ...+++||||+.+....+++..+.+-.|.
T Consensus 303 ~~~--~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 303 AEH--VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HTT--CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred hhc--CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 543 34589999998642211111111100000
Q ss_pred ------------------------------------EEec------cCCCCcce-eeee---------------------
Q 009048 222 ------------------------------------VLKS------SFNRPNLF-YEVR--------------------- 237 (545)
Q Consensus 222 ------------------------------------~~~~------~~~r~ni~-~~v~--------------------- 237 (545)
+++. .+...... +.+.
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 0000 00000000 0000
Q ss_pred ----------------------cccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHh-CCCcEEEecCCCCH
Q 009048 238 ----------------------YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLND 294 (545)
Q Consensus 238 ----------------------~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~-~g~~~~~~h~~l~~ 294 (545)
.......+...|.+++....+.++||||+++..++.++..|.. .|+++..+||+|++
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~ 540 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI 540 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCT
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 0011234677788888877788999999999999999999995 59999999999999
Q ss_pred HHHHHHHHHHHcCC--CcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEec
Q 009048 295 KARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (545)
Q Consensus 295 ~~R~~~~~~f~~g~--~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~ 363 (545)
.+|..+++.|++|+ ++|||||+++++|+|+|++++||++++|.++..|+|++||+||.|+.+.+++|+.
T Consensus 541 ~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp THHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred HHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 99999999999998 9999999999999999999999999999999999999999999999987766643
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.5e-33 Score=310.49 Aligned_cols=286 Identities=16% Similarity=0.203 Sum_probs=204.8
Q ss_pred HHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCC
Q 009048 49 AVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (545)
Q Consensus 49 ~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (545)
..+++++++++||||||||+ ..+..+...+..+|++|+++|+.|+.+.+++.|+.+..+.++... ......
T Consensus 151 r~l~rk~vlv~apTGSGKT~-~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~--------iv~TpG 221 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTY-HAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV--------TVQPNG 221 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHH-HHHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE--------CCSTTC
T ss_pred HhcCCCEEEEEcCCCCCHHH-HHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE--------EecCCC
Confidence 34578999999999999998 444445445667999999999999999999999998887765432 000011
Q ss_pred CCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC--CCcCEEEEEcCCChh
Q 009048 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPK 206 (545)
Q Consensus 129 ~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~--~~~~~l~lTAT~~~~ 206 (545)
...+++.+|+|.+.. ...+++|||||||++.+.+ |...+..+ .... +..+++++|||. .
T Consensus 222 r~~~il~~T~e~~~l------------~~~v~lvVIDEaH~l~d~~--~g~~~~~~---l~~l~~~~i~il~~SAT~--~ 282 (677)
T 3rc3_A 222 KQASHVSCTVEMCSV------------TTPYEVAVIDEIQMIRDPA--RGWAWTRA---LLGLCAEEVHLCGEPAAI--D 282 (677)
T ss_dssp CCCSEEEEEGGGCCS------------SSCEEEEEECSGGGGGCTT--THHHHHHH---HHHCCEEEEEEEECGGGH--H
T ss_pred cccceeEecHhHhhh------------cccCCEEEEecceecCCcc--chHHHHHH---HHccCccceEEEeccchH--H
Confidence 125677777765542 2347999999999997754 55444432 2333 367788888883 3
Q ss_pred hHHHHHHHhcCCCCeEEeccCCCC-cceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcE
Q 009048 207 VQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (545)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~r~-ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~ 285 (545)
....+....+ ....+.. ..+. .+.+...... .+.... ...||||+|++.++.++..|.+.|+.+
T Consensus 283 ~i~~l~~~~~--~~~~v~~-~~r~~~l~~~~~~l~-----------~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v 347 (677)
T 3rc3_A 283 LVMELMYTTG--EEVEVRD-YKRLTPISVLDHALE-----------SLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLES 347 (677)
T ss_dssp HHHHHHHHHT--CCEEEEE-CCCSSCEEECSSCCC-----------SGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhcC--CceEEEE-eeecchHHHHHHHHH-----------HHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCe
Confidence 3444444432 2222221 1111 1111111000 111112 345899999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHHc--CCCcEEEeccccccccccCCCcEEEEeCC--------------CCCHHHHHHHHhhc
Q 009048 286 AAYHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNI--------------PKSMEAFYQESGRA 349 (545)
Q Consensus 286 ~~~h~~l~~~~R~~~~~~f~~--g~~~VLVaT~a~~~GiD~p~v~~VI~~~~--------------p~s~~~y~Qr~GRa 349 (545)
..+||+|++++|..+++.|.+ |+++|||||+++++|||+ +|++||++++ |.|.++|+||+|||
T Consensus 348 ~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRA 426 (677)
T 3rc3_A 348 AVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRA 426 (677)
T ss_dssp EEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTB
T ss_pred eeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCC
Confidence 999999999999999999999 899999999999999999 8999999999 77999999999999
Q ss_pred cCCCCC---CeEEEEeccccHHHHHHHHHhccc
Q 009048 350 GRDQLP---SKSLLYYGMDDRRRMEFILSKNQS 379 (545)
Q Consensus 350 gR~g~~---~~~i~~~~~~d~~~~~~i~~~~~~ 379 (545)
||.|.. |.|+++ .+.+...++.++.....
T Consensus 427 GR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~~ 458 (677)
T 3rc3_A 427 GRFSSRFKEGEVTTM-NHEDLSLLKEILKRPVD 458 (677)
T ss_dssp TCTTSSCSSEEEEES-STTHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCEEEEEE-ecchHHHHHHHHhcCcc
Confidence 999965 555544 45566667666665443
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=9.2e-32 Score=289.97 Aligned_cols=299 Identities=15% Similarity=0.140 Sum_probs=208.6
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEEcChHHHHHHHHHHHHHcC--Cce
Q 009048 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG--IAG 105 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l~-----~~~~~lVi~P~~aL~~qq~~~l~~~g--i~~ 105 (545)
..|+|+|.++++.+. .++++++.++||+|||++++..+.. ..+++|||+| .+|+.||.+.++++. ..+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceE
Confidence 369999999998763 5789999999999999886543321 2468999999 568899999999863 444
Q ss_pred eEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH
Q 009048 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (545)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (545)
...++.... ......+++++|++.+..... + ....+++||+||||++...+. ...
T Consensus 115 ~~~~g~~~~-----------~~~~~~~ivi~t~~~l~~~~~---l----~~~~~~~vIvDEaH~~kn~~~-------~~~ 169 (500)
T 1z63_A 115 AVFHEDRSK-----------IKLEDYDIILTTYAVLLRDTR---L----KEVEWKYIVIDEAQNIKNPQT-------KIF 169 (500)
T ss_dssp EECSSSTTS-----------CCGGGSSEEEEEHHHHTTCHH---H----HTCCEEEEEEETGGGGSCTTS-------HHH
T ss_pred EEEecCchh-----------ccccCCcEEEeeHHHHhccch---h----cCCCcCEEEEeCccccCCHhH-------HHH
Confidence 444433211 111246899999998866432 2 223489999999999976441 223
Q ss_pred HHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCC----------------------------------CCeEEeccC----
Q 009048 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQ----------------------------------NPLVLKSSF---- 227 (545)
Q Consensus 186 ~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~----------------------------------~~~~~~~~~---- 227 (545)
.....++...+++||||+......++...+.+- .+.+++...
T Consensus 170 ~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~ 249 (500)
T 1z63_A 170 KAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKA 249 (500)
T ss_dssp HHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHH
T ss_pred HHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccc
Confidence 333445667789999999776555554433221 122221110
Q ss_pred ---CCCcceeeeecccc--------------------------------------------------------hhhHHHH
Q 009048 228 ---NRPNLFYEVRYKDL--------------------------------------------------------LDDAYAD 248 (545)
Q Consensus 228 ---~r~ni~~~v~~~~~--------------------------------------------------------~~~~~~~ 248 (545)
..|........... ...++..
T Consensus 250 ~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~ 329 (500)
T 1z63_A 250 IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIR 329 (500)
T ss_dssp HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHH
T ss_pred hhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHH
Confidence 11211111111000 0123333
Q ss_pred HHHHHHh--CCCccEEEEecchhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcC-CCc-EEEeccccccccc
Q 009048 249 LCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVAFGMGID 323 (545)
Q Consensus 249 l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-VLVaT~a~~~GiD 323 (545)
+.+++.. ..+.++||||+++..++.++..|... |+.+..+||+++..+|..++++|++| ..+ +|++|.++++|+|
T Consensus 330 l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Gln 409 (500)
T 1z63_A 330 TMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGIN 409 (500)
T ss_dssp HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCC
T ss_pred HHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCc
Confidence 4444443 25678999999999999999999885 99999999999999999999999988 555 7999999999999
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEE
Q 009048 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (545)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~ 361 (545)
++++++||++++|+++..|.|++||++|.|+...+.+|
T Consensus 410 l~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 410 LTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp CTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred hhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 99999999999999999999999999999988776544
No 55
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=5e-30 Score=275.59 Aligned_cols=335 Identities=18% Similarity=0.182 Sum_probs=236.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEEcChHHHHHHHHHHHHH---
Q 009048 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (545)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~aL~~qq~~~l~~--- 100 (545)
..+.++.+|+. +++.|.-..-.+..|+ |+.|.||.|||+++.+|++. .+..+.||+|+..|+.+-.+.+..
T Consensus 65 REAa~R~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~ 141 (822)
T 3jux_A 65 REAARRTLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYL 141 (822)
T ss_dssp HHHHHHHTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHH
Confidence 34557778876 7889999888888888 99999999999999999974 467799999999999987777655
Q ss_pred -cCCceeEeccc--------------------------------------------------ccHHHHHHHHHhhhcCCC
Q 009048 101 -KGIAGEFLSST--------------------------------------------------QTMQVKTKIYEDLDSGKP 129 (545)
Q Consensus 101 -~gi~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~ 129 (545)
+|+.+.++.+. .+...+...+
T Consensus 142 ~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY-------- 213 (822)
T 3jux_A 142 FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY-------- 213 (822)
T ss_dssp HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--------
T ss_pred HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--------
Confidence 69998887762 1111222222
Q ss_pred CccEEEECcccccChhhHHHHH---hhhccCCccEEEEeccccccc-----------cCCCCHHHHHHHHH---------
Q 009048 130 SLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS-----------WGHDFRPSYRKLSS--------- 186 (545)
Q Consensus 130 ~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~-----------~g~~fr~~~~~l~~--------- 186 (545)
..+|.|+|.--+.-.-+...+. ...-...+.+.||||+|.++= -..+-...|..+..
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~ 293 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDK 293 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTT
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCC
Confidence 2578888876443322222221 111234588999999997631 00000111111111
Q ss_pred ---------------------------------------------HHHh--C------------------------C---
Q 009048 187 ---------------------------------------------LRNY--L------------------------P--- 192 (545)
Q Consensus 187 ---------------------------------------------l~~~--~------------------------~--- 192 (545)
++.. + |
T Consensus 294 dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr 373 (822)
T 3jux_A 294 DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRR 373 (822)
T ss_dssp TEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCC
T ss_pred cEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCc
Confidence 1110 0 0
Q ss_pred -----------------------------------CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeee
Q 009048 193 -----------------------------------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR 237 (545)
Q Consensus 193 -----------------------------------~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~ 237 (545)
-..+.+||||+.... ..+...+++. ++..+.++|.......
T Consensus 374 ~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~-~Ef~~iY~l~---vv~IPtnkp~~R~d~~ 449 (822)
T 3jux_A 374 YSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEE-SEFVQVYGME---VVVIPTHKPMIRKDHD 449 (822)
T ss_dssp CGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGH-HHHHHHSCCC---EEECCCSSCCCCEECC
T ss_pred CchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHH-HHHHHHhCCe---EEEECCCCCcceeecC
Confidence 012789999997754 5566666543 5556777776544331
Q ss_pred --cccchhhHHHHHHHHHHhC--CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Q 009048 238 --YKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (545)
Q Consensus 238 --~~~~~~~~~~~l~~~l~~~--~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLV 313 (545)
......+++..+.+.+... .+.++||||+|++.++.++..|.+.|+++..+||+....++..+.+.++.| .|+|
T Consensus 450 d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtV 527 (822)
T 3jux_A 450 DLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTI 527 (822)
T ss_dssp CEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEE
T ss_pred cEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEE
Confidence 2223457788888777642 467899999999999999999999999999999997766666666666666 6999
Q ss_pred eccccccccccC--------CCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccH-------HHHHHHHHhcc
Q 009048 314 ATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-------RRMEFILSKNQ 378 (545)
Q Consensus 314 aT~a~~~GiD~p--------~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~-------~~~~~i~~~~~ 378 (545)
||+++|||+|++ ++.+||++++|.|...|.||+||+||.|.+|.++.|++.+|. .++..++....
T Consensus 528 ATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~ 607 (822)
T 3jux_A 528 ATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILK 607 (822)
T ss_dssp EETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSS
T ss_pred EcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcC
Confidence 999999999998 556999999999999999999999999999999999999883 24455555443
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.3e-28 Score=272.71 Aligned_cols=310 Identities=14% Similarity=0.142 Sum_probs=206.3
Q ss_pred CCCHHHHHHHHHHH---------cCCCEEEEcCCCchHHHHHHHHHh---cC-------CCeEEEEcChHHHHHHHHHHH
Q 009048 38 QFRDKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCYQIPAL---AK-------PGIVLVVSPLIALMENQVIGL 98 (545)
Q Consensus 38 ~~r~~Q~~~i~~il---------~g~d~lv~apTGsGKTl~~~lp~l---~~-------~~~~lVi~P~~aL~~qq~~~l 98 (545)
.|||+|.+++..+. .++.+|+..+||.|||+..+..+. .. .+++|||+|+ +|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999999874 345789999999999987654432 11 2469999997 8889999999
Q ss_pred HHc-C--CceeEecccccHHHHHHHHHhhhcC--CCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccccc
Q 009048 99 KEK-G--IAGEFLSSTQTMQVKTKIYEDLDSG--KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (545)
Q Consensus 99 ~~~-g--i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (545)
.++ + +....+.++................ .....++++|++.+.. .........+++||+||||++...
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~------~~~~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRL------HAEVLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHH------HTTTTTTSCCCEEEETTGGGCCTT
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHh------hHHHhhcCCccEEEEECceecCCh
Confidence 885 2 4444444443322222222222211 1236788888876642 112223345899999999999763
Q ss_pred CCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCC-----------------------------------
Q 009048 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ----------------------------------- 218 (545)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~----------------------------------- 218 (545)
. .........++....++||||+-.+...+++..+.+-
T Consensus 208 ~-------~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 208 D-------NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp C-------HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred h-------hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 3 2222223334566789999998654322221111000
Q ss_pred -----------CCeEEecc-----CCCCcceeeeecc-------------------------------------------
Q 009048 219 -----------NPLVLKSS-----FNRPNLFYEVRYK------------------------------------------- 239 (545)
Q Consensus 219 -----------~~~~~~~~-----~~r~ni~~~v~~~------------------------------------------- 239 (545)
.|.+++.. ...|.....+...
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c 360 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLC 360 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHh
Confidence 00010000 0000000000000
Q ss_pred ----------------------------------cchhhHHHHHH---HHHHhCCCccEEEEecchhhHHHHHHHHHhCC
Q 009048 240 ----------------------------------DLLDDAYADLC---SVLKANGDTCAIVYCLERTTCDELSAYLSAGG 282 (545)
Q Consensus 240 ----------------------------------~~~~~~~~~l~---~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g 282 (545)
.....++..+. ..+...++.++||||+++..++.++..|...|
T Consensus 361 ~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g 440 (644)
T 1z3i_X 361 NHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR 440 (644)
T ss_dssp HCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC
Confidence 00011222233 33333456789999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHHcCCCc---EEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEE
Q 009048 283 ISCAAYHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (545)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~---VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i 359 (545)
+.+..+||+++..+|..++++|.+|... +|++|.++|+|+|++++++||++++|+++..|.|++||++|.|+...+.
T Consensus 441 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~ 520 (644)
T 1z3i_X 441 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 520 (644)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceE
Confidence 9999999999999999999999998764 8999999999999999999999999999999999999999999887665
Q ss_pred EE
Q 009048 360 LY 361 (545)
Q Consensus 360 ~~ 361 (545)
+|
T Consensus 521 v~ 522 (644)
T 1z3i_X 521 IY 522 (644)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-29 Score=282.28 Aligned_cols=311 Identities=19% Similarity=0.182 Sum_probs=215.9
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHh------cCCCeEEEEcChHHHHHHHHHHHHHc--CCc
Q 009048 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKEK--GIA 104 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l------~~~~~~lVi~P~~aL~~qq~~~l~~~--gi~ 104 (545)
.+|||+|.+++..+. .++++|+..+||.|||+..+..+. ...+.+|||+| .+|+.||.+.+.++ ++.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 369999999998766 788999999999999987654332 23678999999 77889999999985 345
Q ss_pred eeEecccccHHHHHHHHHhhh------cCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCH
Q 009048 105 GEFLSSTQTMQVKTKIYEDLD------SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (545)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (545)
+....+............... ......+++++|++.+.... ..+.. ..+++|||||||++...+
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~--~~l~~----~~w~~vIvDEaH~lkn~~---- 383 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR--AELGS----IKWQFMAVDEAHRLKNAE---- 383 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH--HHHHT----SEEEEEEETTGGGGCCSS----
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH--HHHhc----CCcceeehhhhhhhcCch----
Confidence 555554443322211111100 12345789999999875421 12222 238899999999996543
Q ss_pred HHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCe-------------------------------EEeccC
Q 009048 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-------------------------------VLKSSF 227 (545)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~-------------------------------~~~~~~ 227 (545)
..+......++....++||||+......++...+.+-.|. +++...
T Consensus 384 ---s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 384 ---SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp ---SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred ---hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 2333344445566679999999665555554444332221 111000
Q ss_pred -----CCCcceeeeecccc-------------------------------------------------------------
Q 009048 228 -----NRPNLFYEVRYKDL------------------------------------------------------------- 241 (545)
Q Consensus 228 -----~r~ni~~~v~~~~~------------------------------------------------------------- 241 (545)
..|.....+.....
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 01110000000000
Q ss_pred -------------hhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc
Q 009048 242 -------------LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (545)
Q Consensus 242 -------------~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (545)
...++..|.+++.. ..+.++||||..+..++.|...|...|+++..+||+++..+|..+++.|.+
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 01233344445543 245689999999999999999999999999999999999999999999998
Q ss_pred CCC---cEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEE
Q 009048 307 SRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (545)
Q Consensus 307 g~~---~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~ 361 (545)
+.. .+|++|.++|.|||++.+++||++++|+++..+.|++||++|.|+...+.+|
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEE
Confidence 654 4999999999999999999999999999999999999999999987766554
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.8e-27 Score=263.46 Aligned_cols=201 Identities=21% Similarity=0.278 Sum_probs=148.9
Q ss_pred cEEEEeccccc-cccCCCCHHHHHHHHHHHHhC-------------------CCcCEEEEEcCCChhhHHHHHHHhcCCC
Q 009048 160 NLVAIDEAHCI-SSWGHDFRPSYRKLSSLRNYL-------------------PDVPILALTATAAPKVQKDVMESLCLQN 219 (545)
Q Consensus 160 ~~iViDEaH~i-~~~g~~fr~~~~~l~~l~~~~-------------------~~~~~l~lTAT~~~~~~~~i~~~l~~~~ 219 (545)
.+|||||+|++ .+|+..|+..+..+..+...- ...+++++|||+++..... .
T Consensus 327 ~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~-----~--- 398 (664)
T 1c4o_A 327 FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAH-----S--- 398 (664)
T ss_dssp CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHH-----C---
T ss_pred cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHHHHh-----h---
Confidence 57899999985 456655666555544443310 1456899999998754321 0
Q ss_pred CeEEecc-----CCCCcceeeeecccchhhHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCC
Q 009048 220 PLVLKSS-----FNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (545)
Q Consensus 220 ~~~~~~~-----~~r~ni~~~v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l 292 (545)
..++... ...|. ..+... ......+...+.. ..+.++||||+|+..++.+++.|.+.|+++..+||++
T Consensus 399 ~~~~~~~~r~~~l~~p~--i~v~~~---~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~ 473 (664)
T 1c4o_A 399 GRVVEQIIRPTGLLDPL--VRVKPT---ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHEL 473 (664)
T ss_dssp SEEEEECSCTTCCCCCE--EEEECS---TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred hCeeeeeeccCCCCCCe--EEEecc---cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCC
Confidence 1111111 11222 112211 1222333333322 1356899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCC-----CCCHHHHHHHHhhccCCCCCCeEEEEeccccH
Q 009048 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (545)
Q Consensus 293 ~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~-----p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~ 367 (545)
++.+|..+++.|++|+++|||||+++++|+|+|+|++||+++. |.|..+|+||+|||||.| +|.+++|+++.+.
T Consensus 474 ~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 474 DAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCH
T ss_pred CHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCH
Confidence 9999999999999999999999999999999999999999997 999999999999999996 8999999998876
Q ss_pred HHHHHHH
Q 009048 368 RRMEFIL 374 (545)
Q Consensus 368 ~~~~~i~ 374 (545)
...+.+.
T Consensus 553 ~~~~~i~ 559 (664)
T 1c4o_A 553 AMQRAIE 559 (664)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555444
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=4.3e-27 Score=269.40 Aligned_cols=325 Identities=11% Similarity=0.070 Sum_probs=203.8
Q ss_pred CChhHHHHHHHHHhcC------CCCCCHHHHHHHHHHHc--------------CCCEEEEcCCCchHHHHHHHHHhc--C
Q 009048 20 LHEKEALVKLLRWHFG------HAQFRDKQLDAIQAVLS--------------GRDCFCLMPTGGGKSMCYQIPALA--K 77 (545)
Q Consensus 20 ~~~~~~l~~~l~~~fg------~~~~r~~Q~~~i~~il~--------------g~d~lv~apTGsGKTl~~~lp~l~--~ 77 (545)
+...+.+...+....- ...|||+|.+|++.++. +++++++++||||||+++ ++++. .
T Consensus 247 ~~~~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~ 325 (1038)
T 2w00_A 247 CFQKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLAT 325 (1038)
T ss_dssp TTSHHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHT
T ss_pred hhchHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHH
Confidence 3344667777765321 12499999999999875 368999999999999987 33321 1
Q ss_pred ----CCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhh
Q 009048 78 ----PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153 (545)
Q Consensus 78 ----~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~ 153 (545)
..++|||+|+++|+.|+.+.++.++... +.++.+.... ...+.. ...+|+++||..+... .......
T Consensus 326 ~~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~--v~~~~s~~~l---~~~L~~--~~~~IiVtTiqkl~~~--l~~~~~~ 396 (1038)
T 2w00_A 326 ELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDS--VNGSENTAGL---KRNLDK--DDNKIIVTTIQKLNNL--MKAESDL 396 (1038)
T ss_dssp TCTTCCEEEEEECGGGCCHHHHHHHHTTSTTC--SSSSCCCHHH---HHHHHC--SSCCEEEEEHHHHHHH--HHHCCCC
T ss_pred hcCCCceEEEEeCcHHHHHHHHHHHHHhcccc--cccccCHHHH---HHHhcC--CCCCEEEEEHHHHHHH--Hhcccch
Confidence 2589999999999999999998875432 2222222211 122222 2367888888765431 1000001
Q ss_pred hccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhH----HHHHHHhc-------------
Q 009048 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLC------------- 216 (545)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~----~~i~~~l~------------- 216 (545)
.......+||+||||+... | .....++..+|+.++++||||+..... ......+|
T Consensus 397 ~~~~~~~lvIiDEAHrs~~-~-------~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~ 468 (1038)
T 2w00_A 397 PVYNQQVVFIFDECHRSQF-G-------EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIR 468 (1038)
T ss_dssp GGGGSCEEEEEESCCTTHH-H-------HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHH
T ss_pred hccccccEEEEEccchhcc-h-------HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHh
Confidence 1223478999999999642 2 123456778899999999999975321 01111121
Q ss_pred --CCCCeEEeccCCCCccee-----e------eec--ccchhhHHHHHH----HHHHhC--------CCccEEEEecchh
Q 009048 217 --LQNPLVLKSSFNRPNLFY-----E------VRY--KDLLDDAYADLC----SVLKAN--------GDTCAIVYCLERT 269 (545)
Q Consensus 217 --~~~~~~~~~~~~r~ni~~-----~------v~~--~~~~~~~~~~l~----~~l~~~--------~~~~~IIf~~t~~ 269 (545)
..-|..+......+.+.. . ... .-..+..+..+. ...... .+.++||||+|+.
T Consensus 469 dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~ 548 (1038)
T 2w00_A 469 DEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVD 548 (1038)
T ss_dssp HTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHH
T ss_pred CCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHH
Confidence 111221110000000000 0 000 000112222322 222111 2357999999999
Q ss_pred hHHHHHHHHHhCC------------CcE-EEecCC----------C----------CH----------------------
Q 009048 270 TCDELSAYLSAGG------------ISC-AAYHAG----------L----------ND---------------------- 294 (545)
Q Consensus 270 ~~~~l~~~L~~~g------------~~~-~~~h~~----------l----------~~---------------------- 294 (545)
.|..+++.|.+.+ +++ ..+|++ + ++
T Consensus 549 ~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~ 628 (1038)
T 2w00_A 549 AAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFS 628 (1038)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhccccc
Confidence 9999999998754 455 456653 2 22
Q ss_pred -------HHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCC----CeEEEEec
Q 009048 295 -------KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP----SKSLLYYG 363 (545)
Q Consensus 295 -------~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~----~~~i~~~~ 363 (545)
..|..++++|++|+++|||+|+.+.+|+|+|.+ .++.++.|.+...|+|++||++|.+.. |.++.|.+
T Consensus 629 ~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 629 TDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred ccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 147889999999999999999999999999999 788899999999999999999998753 44444443
No 60
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.95 E-value=1.5e-26 Score=225.42 Aligned_cols=196 Identities=18% Similarity=0.198 Sum_probs=152.8
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----------CCCeE
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIV 81 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~-----------~~~~~ 81 (545)
+...|..+++++.+.+.|++ +||..|+++|.++++.+++|+|+++.||||+|||++|++|++. .++.+
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~ 105 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPIC 105 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSE
T ss_pred ccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEE
Confidence 44567778899999999997 8999999999999999999999999999999999999999984 25679
Q ss_pred EEEcChHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccC
Q 009048 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (545)
Q Consensus 82 lVi~P~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~ 157 (545)
||++|+++|+.|+.+.++++ ++....+.++........... . ..+++++||+.+...- ........
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---~~~I~v~Tp~~l~~~l----~~~~~~~~ 175 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R---GVEICIATPGRLIDFL----ECGKTNLR 175 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H---CCSEEEECHHHHHHHH----HHTSCCCT
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C---CCCEEEECHHHHHHHH----HcCCCCcc
Confidence 99999999999998888764 778888877776654433322 2 2678888888663211 11223456
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~ 225 (545)
.+++|||||||++.+|| |++.+..+ +....++.++++||||+++.+...+...+ .+|..+..
T Consensus 176 ~~~~lViDEah~l~~~~--~~~~~~~i--~~~~~~~~q~~~~SAT~~~~~~~~~~~~l--~~~~~i~~ 237 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFL--KDYIHINI 237 (242)
T ss_dssp TCCEEEETTHHHHHHTT--CHHHHHHH--HTTSCSSCEEEEEESCCCHHHHHHHHHHC--SSCEEEEE
T ss_pred cccEEEEeCHHHHhhhC--cHHHHHHH--HHhCCccceEEEEEeecCHHHHHHHHHHC--CCCEEEEe
Confidence 68999999999999998 88777766 22333578999999999998877555544 56765543
No 61
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=1.5e-25 Score=248.06 Aligned_cols=116 Identities=22% Similarity=0.326 Sum_probs=108.5
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccccccCCCcEEEEeCC-
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI- 335 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~- 335 (545)
.+.++||||+|+..++.+++.|.+.|+++..+||++++.+|..+++.|++|+++|||||+++++|+|+|+|++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHH
Q 009048 336 ----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (545)
Q Consensus 336 ----p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i 373 (545)
|.|...|+||+||+||. .+|.|++|+++.+....+.+
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 99999999999999998 68999999998876655443
No 62
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=4.3e-26 Score=208.36 Aligned_cols=151 Identities=21% Similarity=0.372 Sum_probs=135.3
Q ss_pred cCCCCcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHH
Q 009048 226 SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (545)
Q Consensus 226 ~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 305 (545)
+...+++...+.... ..+++..|.+++....++++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|+
T Consensus 4 ~~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVR-EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp --CCCCEEEEEEECC-GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCcccceEEEEECC-hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 344566655555443 3578888888888877789999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhc
Q 009048 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (545)
Q Consensus 306 ~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~ 377 (545)
+|+.+|||||+++++|+|+|++++||++++|.++..|+||+||+||.|++|.+++|+.+.|...++.+.+..
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~ 154 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYI 154 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHH
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988888777644
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=222.43 Aligned_cols=187 Identities=20% Similarity=0.298 Sum_probs=140.5
Q ss_pred CChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------------CCCeEEEEcCh
Q 009048 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KPGIVLVVSPL 87 (545)
Q Consensus 20 ~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------------~~~~~lVi~P~ 87 (545)
+.+.+.+.+.|.+ +|+..|+++|.++++.+++|+|+++.||||+|||++|++|++. .++.+||++|+
T Consensus 25 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt 103 (228)
T 3iuy_A 25 FQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103 (228)
T ss_dssp HTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSS
T ss_pred hccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCC
Confidence 5667889999987 7999999999999999999999999999999999999999875 46779999999
Q ss_pred HHHHHHHHHHHHHc---CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEE
Q 009048 88 IALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (545)
Q Consensus 88 ~aL~~qq~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iVi 164 (545)
++|+.|+.+.++.+ ++....+.++........ .+.. ..+++++||+.+.... .........+++|||
T Consensus 104 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~iiv~Tp~~l~~~~----~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 104 RELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DISK---GVDIIIATPGRLNDLQ----MNNSVNLRSITYLVI 173 (228)
T ss_dssp HHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHHS---CCSEEEECHHHHHHHH----HTTCCCCTTCCEEEE
T ss_pred HHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---HhcC---CCCEEEECHHHHHHHH----HcCCcCcccceEEEE
Confidence 99999999999985 566666665554332221 1222 2678888888663311 112233566899999
Q ss_pred eccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEE
Q 009048 165 DEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (545)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~ 223 (545)
||||++.+|| |++.+..+ +....++.+++++|||+++.+...+. ..+.+|..+
T Consensus 174 DEah~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~--~~l~~p~~i 226 (228)
T 3iuy_A 174 DEADKMLDME--FEPQIRKI--LLDVRPDRQTVMTSATWPDTVRQLAL--SYLKDPMIV 226 (228)
T ss_dssp CCHHHHHHTT--CHHHHHHH--HHHSCSSCEEEEEESCCCHHHHHHHH--TTCSSCEEE
T ss_pred ECHHHHhccc--hHHHHHHH--HHhCCcCCeEEEEEeeCCHHHHHHHH--HHCCCCEEE
Confidence 9999999987 88877766 33334588999999999998877443 335566544
No 64
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.94 E-value=7.3e-26 Score=216.94 Aligned_cols=197 Identities=16% Similarity=0.213 Sum_probs=145.9
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcChHH
Q 009048 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIA 89 (545)
Q Consensus 16 ~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~a 89 (545)
.|+.+++++.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++|+++
T Consensus 5 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 5 QFTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 46778888999999987 89999999999999999999999999999999999999999853 468999999999
Q ss_pred HHHHHHHHHHHc--------CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH-hhhccCCcc
Q 009048 90 LMENQVIGLKEK--------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLN 160 (545)
Q Consensus 90 L~~qq~~~l~~~--------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~ 160 (545)
|+.|+.+.++++ ++.+..+.++...... ........+|+++||+.+.. .+. .......++
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~~Iiv~Tp~~l~~-----~l~~~~~~~~~~~ 152 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA------LEKLNVQPHIVIGTPGRIND-----FIREQALDVHTAH 152 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT------TCCCSSCCSEEEECHHHHHH-----HHHTTCCCGGGCC
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH------HHHcCCCCCEEEeCHHHHHH-----HHHcCCCCcCcce
Confidence 999999998875 4566666655433221 11112246788888886642 111 122334589
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCc
Q 009048 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN 231 (545)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~n 231 (545)
+|||||||++.+|| |... +..+...++ +.+++++|||+++.+.+.+... +.+|..+....++++
T Consensus 153 ~lViDEah~~~~~~--~~~~---l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~p~~~~~~~~~~~ 217 (219)
T 1q0u_A 153 ILVVDEADLMLDMG--FITD---VDQIAARMPKDLQMLVFSATIPEKLKPFLKKY--MENPTFVHVLEHHHH 217 (219)
T ss_dssp EEEECSHHHHHHTT--CHHH---HHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH--CSSCEEEECC-----
T ss_pred EEEEcCchHHhhhC--hHHH---HHHHHHhCCcccEEEEEecCCCHHHHHHHHHH--cCCCeEEEeeccccc
Confidence 99999999999988 5544 445555554 6889999999999887644443 467877766655543
No 65
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=222.03 Aligned_cols=182 Identities=24% Similarity=0.314 Sum_probs=138.2
Q ss_pred CCCCCCC--hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----------CCCeEE
Q 009048 15 QKNKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIVL 82 (545)
Q Consensus 15 ~~~~~~~--~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~----------~~~~~l 82 (545)
..|..+. +.+.+.+.|++ +||..|+++|.++++.++.|+|++++||||+|||++|++|++. .+..+|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 3444444 78999999987 8999999999999999999999999999999999999999984 367799
Q ss_pred EEcChHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh--hhcc
Q 009048 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (545)
Q Consensus 83 Vi~P~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~ 156 (545)
|++|+++|+.|+++.++++ ++....+.++......... +..+ .+|+++||+.+.. .+.. ....
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~---~~Iiv~Tp~~l~~-----~~~~~~~~~~ 199 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG---INIIVATPGRLLD-----HMQNTPGFMY 199 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC---CSEEEECHHHHHH-----HHHHCTTCCC
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC---CCEEEEcHHHHHH-----HHHccCCccc
Confidence 9999999999999999985 4555666665554433222 2222 6788888886532 1111 1235
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHH
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVME 213 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~ 213 (545)
..+++|||||||++.+|| |++.+..+ ...++ ..++++||||+++.+......
T Consensus 200 ~~l~~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~q~l~~SAT~~~~v~~~~~~ 252 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVG--FEEELKQI---IKLLPTRRQTMLFSATQTRKVEDLARI 252 (262)
T ss_dssp TTCCEEEECSHHHHHHTT--CHHHHHHH---HHHSCSSSEEEEECSSCCHHHHHHHHH
T ss_pred ccCCEEEEcChHHHhhhh--HHHHHHHH---HHhCCCCCeEEEEEecCCHHHHHHHHH
Confidence 668999999999999998 88776665 34444 688999999999998774433
No 66
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=218.01 Aligned_cols=193 Identities=21% Similarity=0.295 Sum_probs=147.2
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----------CCCeEE
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIVL 82 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~----------~~~~~l 82 (545)
....|+.+++++.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++. .+.++|
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred ccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 34567888899999999987 7999999999999999999999999999999999999999874 256899
Q ss_pred EEcChHHHHHHHHHHHHHcC----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh--hhcc
Q 009048 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (545)
Q Consensus 83 Vi~P~~aL~~qq~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~ 156 (545)
|++|+++|+.|+.+.++.++ +.+..+.++.......... ...+++++||+.+.. .+.. ....
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~iiv~Tp~~l~~-----~l~~~~~~~~ 169 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-------NNINILVCTPGRLLQ-----HMDETVSFHA 169 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-------TTCSEEEECHHHHHH-----HHHHCSSCCC
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-------CCCCEEEECHHHHHH-----HHHhcCCccc
Confidence 99999999999999999864 5666666655433322211 136888888886632 1222 1234
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~ 225 (545)
..+++|||||||++.+|| |.+.+. .+...++ +.++++||||+++.+.. .....+.+|..+..
T Consensus 170 ~~~~~lViDEah~~~~~~--~~~~~~---~i~~~~~~~~~~l~~SAT~~~~~~~--~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMG--FADTMN---AVIENLPKKRQTLLFSATQTKSVKD--LARLSLKNPEYVWV 232 (236)
T ss_dssp TTCCEEEETTHHHHHHTT--THHHHH---HHHHTSCTTSEEEEEESSCCHHHHH--HHHHSCSSCEEEEC
T ss_pred ccccEEEEeChHHHhcCC--cHHHHH---HHHHhCCCCCeEEEEEeeCCHHHHH--HHHHhCCCCEEEEe
Confidence 568999999999999988 665544 4455554 67899999999998766 44455677776643
No 67
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=207.71 Aligned_cols=149 Identities=21% Similarity=0.336 Sum_probs=131.2
Q ss_pred CcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 009048 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (545)
Q Consensus 230 ~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (545)
+++...+...+...+++..|.++++..+.+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~ 85 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKE 85 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSC
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 45555555454445688999999988878899999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccccccccccCCCcEEEEeCCC------CCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcc
Q 009048 310 QVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (545)
Q Consensus 310 ~VLVaT~a~~~GiD~p~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~ 378 (545)
+|||||+++++|+|+|++++||+|++| .+...|+||+||+||.|++|.+++|+.+.+...+..+.+...
T Consensus 86 ~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 86 KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp SEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred eEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 999999999999999999999999999 999999999999999999999999999999888877776543
No 68
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=218.59 Aligned_cols=193 Identities=23% Similarity=0.296 Sum_probs=150.0
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcC
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P 86 (545)
....|+.+++++.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. ..++||++|
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~P 119 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTP 119 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECS
T ss_pred ccCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeC
Confidence 35668888999999999986 89999999999999999999999999999999999999998752 457999999
Q ss_pred hHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh--hhccCCcc
Q 009048 87 LIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLN 160 (545)
Q Consensus 87 ~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~~~l~ 160 (545)
+++|+.|+.+.++++ ++.+..+.++.......... . ...+|+++||+.+.. .+.. ......++
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~~I~v~Tp~~l~~-----~l~~~~~~~l~~~~ 188 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---A---KKPHIIIATPGRLID-----HLENTKGFNLRALK 188 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---H---TCCSEEEECHHHHHH-----HHHHSTTCCCTTCC
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---c---CCCCEEEECHHHHHH-----HHHcCCCcCccccC
Confidence 999999999998875 77777777776654332221 1 136888888886532 1221 22356689
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEe
Q 009048 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (545)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~ 224 (545)
+||+||||++.+|+ |++.+..+ ...++ +.++++||||+++.+...+.. .+.+|..+.
T Consensus 189 ~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~~~l~~SAT~~~~v~~~~~~--~l~~p~~i~ 246 (249)
T 3ber_A 189 YLVMDEADRILNMD--FETEVDKI---LKVIPRDRKTFLFSATMTKKVQKLQRA--ALKNPVKCA 246 (249)
T ss_dssp EEEECSHHHHHHTT--CHHHHHHH---HHSSCSSSEEEEEESSCCHHHHHHHHH--HCSSCEEEE
T ss_pred EEEEcChhhhhccC--hHHHHHHH---HHhCCCCCeEEEEeccCCHHHHHHHHH--HCCCCEEEE
Confidence 99999999999986 88776655 34444 788999999999988764333 346776654
No 69
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=2.9e-25 Score=210.37 Aligned_cols=190 Identities=22% Similarity=0.228 Sum_probs=145.8
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcChH
Q 009048 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (545)
Q Consensus 15 ~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~ 88 (545)
..|+.+++++.+.+.|++ +|+..|+|+|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 357788899999999987 89999999999999999999999999999999999999999853 45799999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH-hhhccCCccEE
Q 009048 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (545)
Q Consensus 89 aL~~qq~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~~i 162 (545)
+|+.|+.+.++.+ ++.+....++........ .+ ....+++++||+.+.. .+. .......++++
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~l 150 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL---DDTVHVVIATPGRILD-----LIKKGVAKVDHVQMI 150 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT---TSCCSEEEECHHHHHH-----HHHTTCSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc---CCCCCEEEeCHHHHHH-----HHHcCCcCcccCCEE
Confidence 9999999998875 456666666665443221 11 2247899999887632 111 22235568999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEE
Q 009048 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (545)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~ 223 (545)
|+||||++.+++ |++.+..+ ...++ +.+++++|||+++.+...+...+ .+|..+
T Consensus 151 ViDEah~~~~~~--~~~~l~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~l--~~p~~i 205 (206)
T 1vec_A 151 VLDEADKLLSQD--FVQIMEDI---ILTLPKNRQILLYSATFPLSVQKFMNSHL--EKPYEI 205 (206)
T ss_dssp EEETHHHHTSTT--THHHHHHH---HHHSCTTCEEEEEESCCCHHHHHHHHHHC--SSCEEE
T ss_pred EEEChHHhHhhC--cHHHHHHH---HHhCCccceEEEEEeeCCHHHHHHHHHHc--CCCeEe
Confidence 999999998865 76555544 44555 78999999999998877555544 455543
No 70
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=2.5e-25 Score=212.21 Aligned_cols=137 Identities=27% Similarity=0.404 Sum_probs=127.6
Q ss_pred hhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccc
Q 009048 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (545)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (545)
...++..|.+++....++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 35788888888888778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhcc
Q 009048 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (545)
Q Consensus 322 iD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~ 378 (545)
||+|++++||++++|.|.+.|+||+||+||.|++|.|++|+++.|...++.+.+...
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHS
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999988888876544
No 71
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.93 E-value=3e-25 Score=214.44 Aligned_cols=194 Identities=17% Similarity=0.209 Sum_probs=146.0
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcC
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P 86 (545)
....|+.+++++.+.+.|++ +||..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++|
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 34567788889999999987 89999999999999999999999999999999999999998742 468999999
Q ss_pred hHHHHHHHHHHHHHc-----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccE
Q 009048 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (545)
Q Consensus 87 ~~aL~~qq~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~ 161 (545)
+++|+.|+.+.++++ ++.+..+.++.......... ...+|+++||+.+...- . ........+++
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~Iiv~Tp~~l~~~~--~--~~~~~~~~~~~ 169 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-------KKCHIAVGSPGRIKQLI--E--LDYLNPGSIRL 169 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-------TSCSEEEECHHHHHHHH--H--TTSSCGGGCCE
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-------cCCCEEEECHHHHHHHH--h--cCCcccccCCE
Confidence 999999999999886 56667777766654433221 13688888888664211 0 11222345889
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEe
Q 009048 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (545)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~ 224 (545)
|||||||++.+||. |++.+..+ ...++ +.++++||||+++.+...+.. .+.+|..+.
T Consensus 170 lViDEah~~~~~~~-~~~~~~~i---~~~~~~~~~~l~lSAT~~~~~~~~~~~--~~~~p~~i~ 227 (230)
T 2oxc_A 170 FILDEADKLLEEGS-FQEQINWI---YSSLPASKQMLAVSATYPEFLANALTK--YMRDPTFVR 227 (230)
T ss_dssp EEESSHHHHHSTTS-SHHHHHHH---HHHSCSSCEEEEEESCCCHHHHHHHTT--TCSSCEEEC
T ss_pred EEeCCchHhhcCcc-hHHHHHHH---HHhCCCCCeEEEEEeccCHHHHHHHHH--HcCCCeEEE
Confidence 99999999999873 77665554 44555 778999999999886553332 245666553
No 72
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.93 E-value=3.9e-25 Score=212.44 Aligned_cols=192 Identities=19% Similarity=0.235 Sum_probs=142.1
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEEcCh
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lVi~P~ 87 (545)
...|+.+++++.+.+.|++ +|+..|+++|.++++.+++|+++++.+|||+|||++|++|++. ..+++||++|+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 4567788899999999987 7999999999999999999999999999999999999999984 35689999999
Q ss_pred HHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEE
Q 009048 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (545)
Q Consensus 88 ~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iV 163 (545)
++|+.|+.+.++++ ++.+....++........ .+ ...+++++||+.+...- .........+++||
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~----~~~~iiv~Tp~~l~~~~----~~~~~~~~~~~~iV 160 (224)
T 1qde_A 92 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GL----RDAQIVVGTPGRVFDNI----QRRRFRTDKIKMFI 160 (224)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECC-------------C----TTCSEEEECHHHHHHHH----HTTSSCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cC----CCCCEEEECHHHHHHHH----HhCCcchhhCcEEE
Confidence 99999999999875 456666665544332211 11 12678888888663211 11223355689999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEe
Q 009048 164 IDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (545)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~ 224 (545)
|||||++.+|+ |+..+..+ ...+ ++.++++||||+++.+...+... +.+|..+.
T Consensus 161 iDEah~~~~~~--~~~~l~~i---~~~~~~~~~~i~lSAT~~~~~~~~~~~~--~~~p~~i~ 215 (224)
T 1qde_A 161 LDEADEMLSSG--FKEQIYQI---FTLLPPTTQVVLLSATMPNDVLEVTTKF--MRNPVRIL 215 (224)
T ss_dssp EETHHHHHHTT--CHHHHHHH---HHHSCTTCEEEEEESSCCHHHHHHHHHH--CSSCEEEC
T ss_pred EcChhHHhhhh--hHHHHHHH---HHhCCccCeEEEEEeecCHHHHHHHHHH--CCCCEEEE
Confidence 99999999987 66655554 3334 47889999999999887654443 35666553
No 73
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=5.9e-25 Score=210.64 Aligned_cols=193 Identities=15% Similarity=0.194 Sum_probs=146.3
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEEcChH
Q 009048 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (545)
Q Consensus 15 ~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~ 88 (545)
..|+.+++++.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. ..++||++|++
T Consensus 14 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp CCSTTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 458889999999999987 89999999999999999999999999999999999999999853 34899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEE
Q 009048 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (545)
Q Consensus 89 aL~~qq~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iV 163 (545)
+|+.|+.+.++++ ++.+..+.++.......... ..+ ..+++++||+.+.... -........++++|
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~~--~~~i~v~T~~~l~~~~----~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKN--CPHIVVGTPGRILALA----RNKSLNLKHIKHFI 163 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH---HHS--CCSEEEECHHHHHHHH----HTTSSCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH---hcC--CCCEEEeCHHHHHHHH----HhCCCCcccCCEEE
Confidence 9999999999886 67777777776655443322 222 2578888888653211 01122355689999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEE
Q 009048 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (545)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~ 223 (545)
+||||++.++ +.|+..+. .+....+ +.+++++|||+++.+... ....+.+|..+
T Consensus 164 iDEah~~~~~-~~~~~~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~--~~~~~~~p~~i 218 (220)
T 1t6n_A 164 LDECDKMLEQ-LDMRRDVQ---EIFRMTPHEKQVMMFSATLSKEIRPV--CRKFMQDPMEI 218 (220)
T ss_dssp EESHHHHHSS-HHHHHHHH---HHHHTSCSSSEEEEEESCCCTTTHHH--HHTTCSSCEEE
T ss_pred EcCHHHHhcc-cCcHHHHH---HHHHhCCCcCeEEEEEeecCHHHHHH--HHHHcCCCeEE
Confidence 9999999874 12554444 4444454 789999999999987663 33345666654
No 74
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.93 E-value=3.1e-25 Score=215.31 Aligned_cols=195 Identities=18% Similarity=0.242 Sum_probs=141.5
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEEcC
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lVi~P 86 (545)
....|+.+++++.+.+.|+. +||..|+++|.++++.+++|+|+++.+|||+|||++|++|++. .+.++||++|
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 106 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAP 106 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 34568888999999999986 8999999999999999999999999999999999999999985 3468999999
Q ss_pred hHHHHHHHHHHHHHcC----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEE
Q 009048 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (545)
Q Consensus 87 ~~aL~~qq~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~i 162 (545)
+++|+.|+.+.++.++ +.+....++...... ...+..+ ..+++++||+.+...- .........+++|
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~--~~~Ilv~Tp~~l~~~l----~~~~~~~~~~~~l 177 (237)
T 3bor_A 107 TRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAE--APHIVVGTPGRVFDML----NRRYLSPKWIKMF 177 (237)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECC----------------C--CCSEEEECHHHHHHHH----HTTSSCSTTCCEE
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcC--CCCEEEECHHHHHHHH----HhCCcCcccCcEE
Confidence 9999999999998863 445544444332211 1122222 2678888887653211 0122334568999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEe
Q 009048 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (545)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~ 224 (545)
|+||||++.+|| |+..+..+ ...+ ++.+++++|||+++.+...+...+ .+|..+.
T Consensus 178 ViDEah~~~~~~--~~~~l~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~l--~~p~~i~ 233 (237)
T 3bor_A 178 VLDEADEMLSRG--FKDQIYEI---FQKLNTSIQVVLLSATMPTDVLEVTKKFM--RDPIRIL 233 (237)
T ss_dssp EEESHHHHHHTT--CHHHHHHH---HHHSCTTCEEEEECSSCCHHHHHHHHHHC--SSCEEEC
T ss_pred EECCchHhhccC--cHHHHHHH---HHhCCCCCeEEEEEEecCHHHHHHHHHHC--CCCEEEE
Confidence 999999999987 66555444 3444 478999999999998877555444 4666553
No 75
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=2e-25 Score=204.28 Aligned_cols=135 Identities=21% Similarity=0.373 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccccccc
Q 009048 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (545)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~Gi 322 (545)
..++..|.++++..+.+++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 15 ~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~ 94 (165)
T 1fuk_A 15 EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 94 (165)
T ss_dssp GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTC
T ss_pred hhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCC
Confidence 34888888998888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhc
Q 009048 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (545)
Q Consensus 323 D~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~ 377 (545)
|+|++++||++++|.++..|+||+||+||.|++|.|++|+.+.|...+..+.+..
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 149 (165)
T 1fuk_A 95 DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 149 (165)
T ss_dssp CCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHS
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988887776543
No 76
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=4.1e-25 Score=203.71 Aligned_cols=134 Identities=18% Similarity=0.364 Sum_probs=124.8
Q ss_pred hhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccccccc
Q 009048 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (545)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~Gi 322 (545)
.+++..|.++++..+.+++||||+++..++.++..|...|+++..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 16 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 95 (172)
T 1t5i_A 16 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 95 (172)
T ss_dssp GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCc
Confidence 56888899999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccc-cHHHHHHHHHh
Q 009048 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSK 376 (545)
Q Consensus 323 D~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~-d~~~~~~i~~~ 376 (545)
|+|++++||+|++|.|+..|+||+||+||.|+.|.+++|+.+. +...++.+.+.
T Consensus 96 di~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~ 150 (172)
T 1t5i_A 96 DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 150 (172)
T ss_dssp CGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHH
T ss_pred chhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876 45556665544
No 77
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=1.2e-24 Score=206.06 Aligned_cols=190 Identities=18% Similarity=0.194 Sum_probs=143.1
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---------CCCeEEEEcCh
Q 009048 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------KPGIVLVVSPL 87 (545)
Q Consensus 17 ~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---------~~~~~lVi~P~ 87 (545)
|+.+++++.+.+.|++ +|+..|+|+|.++++.+++|+++++.+|||+|||++|++|++. .++++||++|+
T Consensus 3 f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 3 FKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp GGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred hhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 6678888999999987 7999999999999999999999999999999999999999874 24679999999
Q ss_pred HHHHHHHHHHHHHcC--CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEe
Q 009048 88 IALMENQVIGLKEKG--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (545)
Q Consensus 88 ~aL~~qq~~~l~~~g--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViD 165 (545)
++|+.|+.+.++++. +....+.++.......... .. ..+++++||+.+.... .........+++||+|
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~i~v~T~~~l~~~~----~~~~~~~~~~~~iViD 151 (207)
T 2gxq_A 82 RELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL---LR---GADAVVATPGRALDYL----RQGVLDLSRVEVAVLD 151 (207)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH---HH---CCSEEEECHHHHHHHH----HHTSSCCTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh---hC---CCCEEEECHHHHHHHH----HcCCcchhhceEEEEE
Confidence 999999999999863 5566666655443322221 11 2678888888653211 0122335668999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhCC-CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEe
Q 009048 166 EAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (545)
Q Consensus 166 EaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~ 224 (545)
|||++.+++ |+..+..+ ....+ +.+++++|||+++.+....... +.+|.++.
T Consensus 152 Eah~~~~~~--~~~~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~p~~i~ 204 (207)
T 2gxq_A 152 EADEMLSMG--FEEEVEAL---LSATPPSRQTLLFSATLPSWAKRLAERY--MKNPVLIN 204 (207)
T ss_dssp SHHHHHHTT--CHHHHHHH---HHTSCTTSEEEEECSSCCHHHHHHHHHH--CSSCEEEE
T ss_pred ChhHhhccc--hHHHHHHH---HHhCCccCeEEEEEEecCHHHHHHHHHH--cCCCeEEE
Confidence 999999877 66655554 44444 7889999999998876533333 45676553
No 78
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.92 E-value=5.9e-25 Score=205.03 Aligned_cols=147 Identities=22% Similarity=0.392 Sum_probs=117.6
Q ss_pred CCcceeeeecccchhhHHHHHHHHHHhC-CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC
Q 009048 229 RPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (545)
Q Consensus 229 r~ni~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 307 (545)
.+++...+.... ..+++..|.++++.. ++.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 17 ~~~i~q~~~~v~-~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 17 SENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CTTEEEEEEECC-GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCceEEEEEeC-cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 456655555443 256788888888876 467899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHh
Q 009048 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (545)
Q Consensus 308 ~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~ 376 (545)
+.+|||||+++++|+|+|++++||++++|.++..|+||+||+||.|+.|.|++|+.+.|...++.+.+.
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 164 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDL 164 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHH
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987766666553
No 79
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.92 E-value=3.4e-25 Score=217.09 Aligned_cols=197 Identities=19% Similarity=0.219 Sum_probs=146.2
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---------------
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------------- 77 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------------- 77 (545)
....|+.+++++.+.+.|+. +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++..
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred ccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 44568888888899999986 79999999999999999999999999999999999999998742
Q ss_pred CCeEEEEcChHHHHHHHHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH-h
Q 009048 78 PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K 152 (545)
Q Consensus 78 ~~~~lVi~P~~aL~~qq~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~ 152 (545)
.+++||++|+++|+.|+.+.++.+ ++....+.++......... +. ...+|+++||+.+.. .+. .
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~---~~~~Ivv~Tp~~l~~-----~l~~~ 168 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---VQ---MGCHLLVATPGRLVD-----FIEKN 168 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---HS---SCCSEEEECHHHHHH-----HHHTT
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hC---CCCCEEEECHHHHHH-----HHHcC
Confidence 258999999999999999998875 3555556655544332221 11 236888888886532 121 1
Q ss_pred hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC--CcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec
Q 009048 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (545)
Q Consensus 153 ~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~--~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~ 225 (545)
......+++||+||||++.+|| |++.+..+........ +.++++||||+++.+.......+ .+|..+..
T Consensus 169 ~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~~ 239 (253)
T 1wrb_A 169 KISLEFCKYIVLDEADRMLDMG--FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL--YNYIFMTV 239 (253)
T ss_dssp SBCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC--SSCEEEEE
T ss_pred CCChhhCCEEEEeCHHHHHhCc--hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEEEE
Confidence 2235568999999999999988 8877766643222222 57899999999998766444433 46665543
No 80
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.92 E-value=5.3e-25 Score=214.61 Aligned_cols=191 Identities=21% Similarity=0.238 Sum_probs=138.4
Q ss_pred ChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-------CCCeEEEEcChHHHHHH
Q 009048 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALMEN 93 (545)
Q Consensus 21 ~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~-------~~~~~lVi~P~~aL~~q 93 (545)
.+++.+.+.|.+ +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++. .+.++||++|+++|+.|
T Consensus 35 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 35 KINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQ 113 (245)
T ss_dssp CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHH
Confidence 567889999987 7999999999999999999999999999999999999999974 34579999999999999
Q ss_pred HHHHHHHc----CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh---hhccCCccEEEEec
Q 009048 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDE 166 (545)
Q Consensus 94 q~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~---~~~~~~l~~iViDE 166 (545)
+.+.++++ ++....+.++... .... ........+|+++||+.+.. .+.. ......+++|||||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~I~v~Tp~~l~~-----~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 114 IHRELIKISEGTGFRIHMIHKAAVA---AKKF--GPKSSKKFDILVTTPNRLIY-----LLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp HHHHHHHHTTTSCCCEECCCHHHHH---HTTT--STTSCCCCCEEEECHHHHHH-----HHHSSSCSCCCTTCCEEEESS
T ss_pred HHHHHHHHhcccCceEEEEecCccH---HHHh--hhhhcCCCCEEEECHHHHHH-----HHHhCCCCcccccCcEEEEeC
Confidence 99999986 4444433322111 0000 11112346788888886632 1211 23355689999999
Q ss_pred cccccccC-CCCHHHHHHHHHHHHh-CCCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEecc
Q 009048 167 AHCISSWG-HDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS 226 (545)
Q Consensus 167 aH~i~~~g-~~fr~~~~~l~~l~~~-~~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~ 226 (545)
||++.+|| ..|+..+..+ +... .++.++++||||+++.+...+.. .+.+|..+..+
T Consensus 184 ah~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~SAT~~~~v~~~~~~--~l~~p~~i~~~ 241 (245)
T 3dkp_A 184 SDKLFEDGKTGFRDQLASI--FLACTSHKVRRAMFSATFAYDVEQWCKL--NLDNVISVSIG 241 (245)
T ss_dssp HHHHHHHC--CHHHHHHHH--HHHCCCTTCEEEEEESSCCHHHHHHHHH--HSSSCEEEEEC
T ss_pred hHHhcccccccHHHHHHHH--HHhcCCCCcEEEEEeccCCHHHHHHHHH--hCCCCEEEEeC
Confidence 99999987 3577666655 2222 24789999999999988774333 34677766543
No 81
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.92 E-value=8.3e-25 Score=219.84 Aligned_cols=192 Identities=18% Similarity=0.212 Sum_probs=142.4
Q ss_pred cccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------CCeEEE
Q 009048 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLV 83 (545)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~lp~l~~------~~~~lV 83 (545)
.+...|+.+++++.+.+.|.. +||..|+++|.++|+.++.| +|++++||||||||++|++|++.. .+.+||
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~li 167 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC 167 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred CCcCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEE
Confidence 345678888999999999997 89999999999999999987 999999999999999999999852 347999
Q ss_pred EcChHHHHHHHHHHHHHcC-----CceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHh--hhcc
Q 009048 84 VSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (545)
Q Consensus 84 i~P~~aL~~qq~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~ 156 (545)
|+||++|+.|+...++.++ +......++..... ......+|+++||+.+.. .+.+ ....
T Consensus 168 l~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~IlV~TP~~l~~-----~l~~~~~~~l 233 (300)
T 3fmo_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTVLD-----WCSKLKFIDP 233 (300)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT---------TCCCCCSEEEECHHHHHH-----HHTTTCCCCG
T ss_pred EcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh---------hhcCCCCEEEECHHHHHH-----HHHhcCCCCh
Confidence 9999999999999888753 44444444332111 012235788887775521 1211 2234
Q ss_pred CCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhC-CCcCEEEEEcCCChhhHHHHHHHhcCCCCeEEec
Q 009048 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~ 225 (545)
..+++|||||||++.+ +| |+..+..+ ...+ +++++++||||++..+.... ...+.+|.++..
T Consensus 234 ~~l~~lVlDEad~l~~~~~--~~~~~~~i---~~~~~~~~q~i~~SAT~~~~v~~~a--~~~l~~p~~i~~ 297 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQG--HQDQSIRI---QRMLPRNCQMLLFSATFEDSVWKFA--QKVVPDPNVIKL 297 (300)
T ss_dssp GGCSEEEETTHHHHHHSTT--HHHHHHHH---HTTSCTTCEEEEEESCCCHHHHHHH--HHHSSSCEEEEE
T ss_pred hhceEEEEeCHHHHhhccC--cHHHHHHH---HHhCCCCCEEEEEeccCCHHHHHHH--HHHCCCCeEEEe
Confidence 5689999999999987 55 66655544 3444 46899999999999987743 334567776643
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=2.7e-24 Score=201.56 Aligned_cols=143 Identities=19% Similarity=0.364 Sum_probs=122.7
Q ss_pred CcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 009048 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (545)
Q Consensus 230 ~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (545)
+++...+.... ..+++..|.+++...+ +++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+.
T Consensus 28 ~~i~q~~~~~~-~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~ 105 (191)
T 2p6n_A 28 LDVIQEVEYVK-EEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 105 (191)
T ss_dssp CCSEEEEEECC-GGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSC
T ss_pred cCceEEEEEcC-hHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 44544444333 2568888888887654 579999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccc-cHHHHHHHH
Q 009048 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFIL 374 (545)
Q Consensus 310 ~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~-d~~~~~~i~ 374 (545)
+|||||+++++|+|+|++++||+|++|.+++.|+||+||+||.|++|.+++|+++. |...++.+.
T Consensus 106 ~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~ 171 (191)
T 2p6n_A 106 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLK 171 (191)
T ss_dssp SEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876 555544443
No 83
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=9.7e-22 Score=215.21 Aligned_cols=324 Identities=20% Similarity=0.182 Sum_probs=224.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCCCeEEEEcChHHHHHHHHHHHHH--
Q 009048 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE-- 100 (545)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l---~~~~~~lVi~P~~aL~~qq~~~l~~-- 100 (545)
+..+-++.+|+ .++++|..+++.++.|+ ++.|+||+|||++|.+|++ ..+..++|++||+.|+.|..+.+..
T Consensus 68 vREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 68 TRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 34566778999 79999999999999998 9999999999999999995 2456799999999999998888765
Q ss_pred --cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHH---HhhhccC---CccEEEEecccccc-
Q 009048 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRG---LLNLVAIDEAHCIS- 171 (545)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l---~~~~~~~---~l~~iViDEaH~i~- 171 (545)
+|+.+..+.++.....+...+ ..+|+|+||-.+.-..+...+ ....... .+.++||||||.++
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~~ay--------~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERRKAY--------LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHHHHH--------TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred HhcCCeEEEEeCCCCHHHHHHHc--------CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 589999988888766554433 267888888765311111111 0112344 68999999999986
Q ss_pred ccCCC----------CHHHHHHHHHHHHhCC-------------------------------------------------
Q 009048 172 SWGHD----------FRPSYRKLSSLRNYLP------------------------------------------------- 192 (545)
Q Consensus 172 ~~g~~----------fr~~~~~l~~l~~~~~------------------------------------------------- 192 (545)
+.+.. --..|..+..+...++
T Consensus 217 DeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~ 296 (997)
T 2ipc_A 217 DEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPE 296 (997)
T ss_dssp SSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTT
T ss_pred hCCCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCch
Confidence 21100 0111111111111110
Q ss_pred -------------------------------------------C------------------------------------
Q 009048 193 -------------------------------------------D------------------------------------ 193 (545)
Q Consensus 193 -------------------------------------------~------------------------------------ 193 (545)
+
T Consensus 297 n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr 376 (997)
T 2ipc_A 297 NMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFR 376 (997)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHH
Confidence 0
Q ss_pred --cCEEEEEcCCChhhHHHHHHHhcCCCCeEEeccCCCCcceeeeec--ccchhhHHHHHHHHHHh--CCCccEEEEecc
Q 009048 194 --VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLE 267 (545)
Q Consensus 194 --~~~l~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~~t 267 (545)
..+.+||+|+.... ..+.+.+++. ++..+.++|.+...... ......++..+.+.+.. ..+.|+||.|.|
T Consensus 377 ~Y~kLsGMTGTA~tE~-~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~S 452 (997)
T 2ipc_A 377 LYEKRAGMTGTAKTEE-KEFQEIYGMD---VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTIS 452 (997)
T ss_dssp TSSEEEEEESSCGGGH-HHHHHHHCCC---EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSS
T ss_pred hChHheecCCCchHHH-HHHHHHhCCC---EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 02678888987653 4566666654 45567777776543221 12235566666555433 246789999999
Q ss_pred hhhHHHHHHHHH--------------------------------------------------------------------
Q 009048 268 RTTCDELSAYLS-------------------------------------------------------------------- 279 (545)
Q Consensus 268 ~~~~~~l~~~L~-------------------------------------------------------------------- 279 (545)
++..+.|+..|.
T Consensus 453 Ie~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 532 (997)
T 2ipc_A 453 IEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKR 532 (997)
T ss_dssp HHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccch
Confidence 999999999999
Q ss_pred --------hCCCcEEEecCCCCHHHHHHHHHHHHcC-CCcEEEeccccccccccCCC-------------------c---
Q 009048 280 --------AGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDV-------------------R--- 328 (545)
Q Consensus 280 --------~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VLVaT~a~~~GiD~p~v-------------------~--- 328 (545)
+.|++...+++.....+-.-+-+ .| .-.|-|||+++|+|.|+.=- .
T Consensus 533 ~~~~~~~~~~gI~H~VLNAK~he~EAeIIAq---AG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~ 609 (997)
T 2ipc_A 533 AVHTLAVLRQGIPHQVLNAKHHAREAEIVAQ---AGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKV 609 (997)
T ss_dssp HHHHHHHHHHCCCCCEECSSSHHHHHHHHHT---TTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHH
T ss_pred hhhhhHHHHcCCCeeeccccchHHHHHHHHh---cCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccc
Confidence 45677667777654333222222 23 34699999999999998521 1
Q ss_pred ----------------------------------------------------EEEEeCCCCCHHHHHHHHhhccCCCCCC
Q 009048 329 ----------------------------------------------------LVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (545)
Q Consensus 329 ----------------------------------------------------~VI~~~~p~s~~~y~Qr~GRagR~g~~~ 356 (545)
+||-...+.|-.-=-|-.||+||.|.||
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPG 689 (997)
T 2ipc_A 610 ELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPG 689 (997)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCC
T ss_pred ccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCC
Confidence 8999999999999999999999999999
Q ss_pred eEEEEeccccH
Q 009048 357 KSLLYYGMDDR 367 (545)
Q Consensus 357 ~~i~~~~~~d~ 367 (545)
.+..|.+.+|-
T Consensus 690 sSrF~LSLeDd 700 (997)
T 2ipc_A 690 GSRFYVSFDDD 700 (997)
T ss_dssp EEEEEEESSSH
T ss_pred CeEEEEECChH
Confidence 99999988773
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=5.1e-24 Score=213.08 Aligned_cols=137 Identities=26% Similarity=0.392 Sum_probs=124.4
Q ss_pred hhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccccccc
Q 009048 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (545)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~Gi 322 (545)
.+++..|.++++...++++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 13 ~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gi 92 (300)
T 3i32_A 13 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGL 92 (300)
T ss_dssp SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCST
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCc
Confidence 46888888888877788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHHhccc
Q 009048 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (545)
Q Consensus 323 D~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~~~~~ 379 (545)
|+|+|++||++++|.+.+.|+||+||+||.|++|.|++|+++.+...++.+.+....
T Consensus 93 di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 93 DIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp TCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred cccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999888888776543
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.85 E-value=4.4e-26 Score=209.77 Aligned_cols=145 Identities=23% Similarity=0.302 Sum_probs=128.4
Q ss_pred cceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCc
Q 009048 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (545)
Q Consensus 231 ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (545)
++...+...+....++..|.++++...+.++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 44433433333356777788888777778899999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEEeccccHHHHHHHHH
Q 009048 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (545)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~~~~~d~~~~~~i~~ 375 (545)
|||||+++++|+|+|++++||++++|.|+..|+||+||+||.|+.|.+++++.+.|...+..+.+
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 99999999999999999999999999999999999999999999999999999888777665554
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=8.2e-23 Score=221.60 Aligned_cols=317 Identities=15% Similarity=0.155 Sum_probs=175.2
Q ss_pred hcCCCCCCHHHHHHHHH----HHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEe
Q 009048 33 HFGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (545)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~----il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~ 108 (545)
..|+ .+||+|.+++.+ +..|+++++.||||+|||++|++|++...++++|++||++|+.|+++.+..++++...+
T Consensus 3 ~~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l 81 (540)
T 2vl7_A 3 VLKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFL 81 (540)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEe
Confidence 3577 699999998654 45789999999999999999999999999999999999999999999999888777666
Q ss_pred cccccHHHHH-----------------------------HHHHhh------------hcCCCCccEEEECcccccChhhH
Q 009048 109 SSTQTMQVKT-----------------------------KIYEDL------------DSGKPSLRLLYVTPELTATPGFM 147 (545)
Q Consensus 109 ~~~~~~~~~~-----------------------------~~~~~~------------~~~~~~~~il~~tpe~~~t~~~~ 147 (545)
.+........ ..+..+ .......+++++++..+..+...
T Consensus 82 ~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~ 161 (540)
T 2vl7_A 82 IGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIR 161 (540)
T ss_dssp ---------------------------------------------------------CTTGGGCSEEEEETHHHHSHHHH
T ss_pred cCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHH
Confidence 5432100000 000000 01112357888888887776544
Q ss_pred HHHHh---hhccCCccEEEEecccccccc----CC-----CCHHHHH---------------------------------
Q 009048 148 SKLKK---IHSRGLLNLVAIDEAHCISSW----GH-----DFRPSYR--------------------------------- 182 (545)
Q Consensus 148 ~~l~~---~~~~~~l~~iViDEaH~i~~~----g~-----~fr~~~~--------------------------------- 182 (545)
..+.. ........++||||||.+... +. ++...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 241 (540)
T 2vl7_A 162 NSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLLIDYMSKLIKD 241 (540)
T ss_dssp HHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTSCCS
T ss_pred HhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 33320 001233679999999998431 00 0000000
Q ss_pred ------------------HHHHHHH------------------------------------hCC-------------CcC
Q 009048 183 ------------------KLSSLRN------------------------------------YLP-------------DVP 195 (545)
Q Consensus 183 ------------------~l~~l~~------------------------------------~~~-------------~~~ 195 (545)
.+..+.. ..| ...
T Consensus 242 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~~l~~~~~~~~~ 321 (540)
T 2vl7_A 242 GRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQLIEDALNVKTF 321 (540)
T ss_dssp SSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHHHHHHHTCCSSC
T ss_pred ccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHHHHHHhcCccCC
Confidence 1111100 001 011
Q ss_pred EEEEEcCCChhhHHHHHHHhcCCCCe--EEeccCCCCccee--eee-cccch----hhHHHHHHHHHHhCCCccEEEEec
Q 009048 196 ILALTATAAPKVQKDVMESLCLQNPL--VLKSSFNRPNLFY--EVR-YKDLL----DDAYADLCSVLKANGDTCAIVYCL 266 (545)
Q Consensus 196 ~l~lTAT~~~~~~~~i~~~l~~~~~~--~~~~~~~r~ni~~--~v~-~~~~~----~~~~~~l~~~l~~~~~~~~IIf~~ 266 (545)
+|++|||+++.. ++.... .+...+....+.. .+. +.+.. ......|.+++.. .++.+|||++
T Consensus 322 ~IltSATL~p~~--------~~~~~f~~~~~~~~g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~~~-~~g~~lvff~ 392 (540)
T 2vl7_A 322 KVLMSGTLPESL--------TLTNSYKIVVNESYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYEN-SSKSVLVFFP 392 (540)
T ss_dssp EEEEESSCCTTC--------CCTTEEEEECCCC-CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHT-CSSEEEEEES
T ss_pred eEEEcccCCCCc--------ccchhcCCchhheecCCcceeccccCCCcccccCHHHHHHHHHHHHHHh-CCCCEEEEeC
Confidence 377777777610 000000 0000000000000 000 00000 2233334444444 3457999999
Q ss_pred chhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEE--eccccccccccCC----CcEEEEeCCCCC-H
Q 009048 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV--ATVAFGMGIDRKD----VRLVCHFNIPKS-M 339 (545)
Q Consensus 267 t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLV--aT~a~~~GiD~p~----v~~VI~~~~p~s-~ 339 (545)
|...++.+++.|.. .+ ...++.. ..|..+++.|+++. .||+ +|..|.+|||+|+ +++||++++|.. +
T Consensus 393 S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 393 SYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp CHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCCCCCT
T ss_pred CHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCCC
Confidence 99999999998865 33 4556554 46888999999865 5776 8999999999998 899999999841 1
Q ss_pred -----------------------------HHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 340 -----------------------------EAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 340 -----------------------------~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
..+.|.+||+-|....--++++.+..
T Consensus 467 ~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 467 SDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp TSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 23468999999986554556666543
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.83 E-value=7.4e-19 Score=191.13 Aligned_cols=316 Identities=14% Similarity=0.086 Sum_probs=197.9
Q ss_pred CCCCCCHHHHHHHHH----HHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHc----CCcee
Q 009048 35 GHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK----GIAGE 106 (545)
Q Consensus 35 g~~~~r~~Q~~~i~~----il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~----gi~~~ 106 (545)
|| ++||+|.+++.+ +..|+++++.||||+|||++|++|++...++++|++||++|+.|..+.+..+ +++..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 44 599999997765 4578999999999999999999999998899999999999999998888876 56666
Q ss_pred EecccccHHH------------------------------HHHHHHhh---------------hcCCCCccEEEECcccc
Q 009048 107 FLSSTQTMQV------------------------------KTKIYEDL---------------DSGKPSLRLLYVTPELT 141 (545)
Q Consensus 107 ~~~~~~~~~~------------------------------~~~~~~~~---------------~~~~~~~~il~~tpe~~ 141 (545)
.+.+...... .......+ .......+|+++|+..+
T Consensus 80 ~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l 159 (551)
T 3crv_A 80 FLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYF 159 (551)
T ss_dssp ECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHH
T ss_pred EEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHh
Confidence 6554221100 00000000 11112468999998887
Q ss_pred cChhhHHHHHhhhccCCccEEEEeccccccccCCC---------------------------------------------
Q 009048 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD--------------------------------------------- 176 (545)
Q Consensus 142 ~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~--------------------------------------------- 176 (545)
..+.....+ .......++||||||.+.+ ..+
T Consensus 160 ~~~~~~~~~---~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 160 FIDRYREFI---DIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HCHHHHTTS---CCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred cCHHHHHhc---CCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 776422211 1112467899999999865 210
Q ss_pred --------CHHHHH-------------------------HHHHHH----------------------------HhCCC--
Q 009048 177 --------FRPSYR-------------------------KLSSLR----------------------------NYLPD-- 193 (545)
Q Consensus 177 --------fr~~~~-------------------------~l~~l~----------------------------~~~~~-- 193 (545)
+..... .+..+. +.+..
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 000000 000000 01122
Q ss_pred cCEEEEEcCCChhhHHHHHHHhcCCCCeE-------EeccCCCCcceeeeec-cc-----c----hhhHHHHHHHHHHhC
Q 009048 194 VPILALTATAAPKVQKDVMESLCLQNPLV-------LKSSFNRPNLFYEVRY-KD-----L----LDDAYADLCSVLKAN 256 (545)
Q Consensus 194 ~~~l~lTAT~~~~~~~~i~~~l~~~~~~~-------~~~~~~r~ni~~~v~~-~~-----~----~~~~~~~l~~~l~~~ 256 (545)
.++|++|||+++ ...+...+|+..+.. +..++ ..+....+.. .+ . .......|.+++...
T Consensus 316 ~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 316 LSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp CEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC
Confidence 688999999998 466778888864432 12233 3333222211 00 0 112233344444444
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEec--cccccccccC-----CCcE
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT--VAFGMGIDRK-----DVRL 329 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT--~a~~~GiD~p-----~v~~ 329 (545)
+ +.++||++|....+.+++. .+.++..-..+++. ..+++.|+.+.-.||+|| ..|.+|||+| ..+.
T Consensus 393 ~-g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 393 K-ANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp S-SEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred C-CCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 4 4699999999999999873 35444433334553 456777754445799998 5999999999 3789
Q ss_pred EEEeCCCCC--------------------H----------HHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 330 VCHFNIPKS--------------------M----------EAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 330 VI~~~~p~s--------------------~----------~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
||..++|.. . ....|-+||+-|....--++++.+..
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 999987741 1 11248899999987665566666644
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=170.83 Aligned_cols=162 Identities=22% Similarity=0.212 Sum_probs=99.1
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---------CCeEEEEcChHHHHHH-HHHHHHHc--
Q 009048 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVVSPLIALMEN-QVIGLKEK-- 101 (545)
Q Consensus 34 fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------~~~~lVi~P~~aL~~q-q~~~l~~~-- 101 (545)
.+...|+++|.++++.+++++++++.+|||+|||++|+++++.. .+++||++|+++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 44557999999999999999999999999999999999888742 6789999999999998 55556654
Q ss_pred -CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHH--hhhccCCccEEEEeccccccccCCCCH
Q 009048 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFR 178 (545)
Q Consensus 102 -gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~--~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (545)
++.+..+.++......... +.. ..+|+++||+.+.......... .......+++|||||||++...+ .++
T Consensus 109 ~~~~v~~~~g~~~~~~~~~~---~~~---~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~-~~~ 181 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFPE---VVK---SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA-VYN 181 (216)
T ss_dssp TTSCEEECCC---CCCCHHH---HHH---HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHH
T ss_pred cCceEEEEeCCcccchhHHh---hcc---CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCC-cHH
Confidence 4566555544322111000 001 2678888888653311100000 00223458899999999997543 233
Q ss_pred HHHHHHHHHH--Hh---------CCCcCEEEEEcC
Q 009048 179 PSYRKLSSLR--NY---------LPDVPILALTAT 202 (545)
Q Consensus 179 ~~~~~l~~l~--~~---------~~~~~~l~lTAT 202 (545)
..+..+...+ .. .+..++++||||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 182 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3322221111 11 167899999998
No 89
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.74 E-value=8.2e-17 Score=176.70 Aligned_cols=163 Identities=14% Similarity=0.110 Sum_probs=103.8
Q ss_pred CEEEEEcCCChhhHHHHHHHhcCCCCeEE--eccCCCCcceeeeecc------cchh----hHHHHHHHHHHhCCCccEE
Q 009048 195 PILALTATAAPKVQKDVMESLCLQNPLVL--KSSFNRPNLFYEVRYK------DLLD----DAYADLCSVLKANGDTCAI 262 (545)
Q Consensus 195 ~~l~lTAT~~~~~~~~i~~~l~~~~~~~~--~~~~~r~ni~~~v~~~------~~~~----~~~~~l~~~l~~~~~~~~I 262 (545)
.+|++|||+++ ...+...+|+. ...+ ..+++..+....+... .... .....|.+++...+ +.++
T Consensus 377 ~~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~-g~~l 452 (620)
T 4a15_A 377 KTIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVK-KNTI 452 (620)
T ss_dssp EEEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHC-SCEE
T ss_pred eEEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 45899999998 56778888886 4333 2344444443222111 0111 12233444444444 4599
Q ss_pred EEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc--ccccccccCC--CcEEEEeCCCCC
Q 009048 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRKD--VRLVCHFNIPKS 338 (545)
Q Consensus 263 If~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~--a~~~GiD~p~--v~~VI~~~~p~s 338 (545)
||++|....+.+++.|.. +... ..-+++..+|..++++|. ++-.||++|. .|.+|||+|+ .+.||..++|..
T Consensus 453 vlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp 528 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP 528 (620)
T ss_dssp EEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCC
T ss_pred EEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCC
Confidence 999999999999998862 2222 555666778999999999 8889999975 9999999986 689999998841
Q ss_pred -------------------H----------HHHHHHHhhccCCCCCCeEEEEeccc
Q 009048 339 -------------------M----------EAFYQESGRAGRDQLPSKSLLYYGMD 365 (545)
Q Consensus 339 -------------------~----------~~y~Qr~GRagR~g~~~~~i~~~~~~ 365 (545)
. ....|-+||+-|....--++++++..
T Consensus 529 ~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 529 RPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp CCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 1 12269999999987666667777654
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.74 E-value=4.9e-18 Score=168.91 Aligned_cols=145 Identities=17% Similarity=0.109 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEEcChHHHHHHHHHHHHHcCC----ceeEec
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGI----AGEFLS 109 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~aL~~qq~~~l~~~gi----~~~~~~ 109 (545)
.++++|.++++.++.+++.++.+|||+|||+++++++.. ..+++|||+|+++|+.|+.+.+++++. ....+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 699999999999998889999999999999999877663 345899999999999999999999754 233443
Q ss_pred ccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 009048 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (545)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (545)
++..... ......+++++||+.+..... .....+++|||||||++.. ..+..+..
T Consensus 193 ~~~~~~~---------~~~~~~~I~v~T~~~l~~~~~-------~~~~~~~~vIiDEaH~~~~---------~~~~~il~ 247 (282)
T 1rif_A 193 GGASKDD---------KYKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (282)
T ss_dssp TTCSSTT---------CCCTTCSEEEECHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHTT
T ss_pred CCCcchh---------hhccCCcEEEEchHHHHhhHH-------HHHhhCCEEEEECCccCCc---------ccHHHHHH
Confidence 3332110 111347899999987654321 1123479999999999874 23444555
Q ss_pred hC-CCcCEEEEEcCCChhh
Q 009048 190 YL-PDVPILALTATAAPKV 207 (545)
Q Consensus 190 ~~-~~~~~l~lTAT~~~~~ 207 (545)
.+ +..++++||||++...
T Consensus 248 ~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 248 GLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TCTTCCEEEEECSSCCTTS
T ss_pred HhhcCCeEEEEeCCCCCcc
Confidence 55 5788999999997654
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.74 E-value=7.7e-18 Score=163.09 Aligned_cols=139 Identities=22% Similarity=0.171 Sum_probs=108.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHcCCc-eeEecccccHHH
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~-~~~~~~~~~~~~ 116 (545)
.++++|.+++..+++++++++++|||+|||++++.++....+.++|++|+++|+.|+.+.+.++++. +..+.+...
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~--- 169 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK--- 169 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB---
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC---
Confidence 6899999999999999999999999999999999988888889999999999999999999998888 766665542
Q ss_pred HHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCE
Q 009048 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (545)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 196 (545)
...+++++|++.+.... ... ...+++|||||||++...+ | . .+...++...+
T Consensus 170 ------------~~~~i~v~T~~~l~~~~-----~~~--~~~~~llIiDEaH~l~~~~--~----~---~i~~~~~~~~~ 221 (237)
T 2fz4_A 170 ------------ELKPLTVSTYDSAYVNA-----EKL--GNRFMLLIFDEVHHLPAES--Y----V---QIAQMSIAPFR 221 (237)
T ss_dssp ------------CCCSEEEEEHHHHHHTH-----HHH--TTTCSEEEEECSSCCCTTT--H----H---HHHHTCCCSEE
T ss_pred ------------CcCCEEEEeHHHHHhhH-----HHh--cccCCEEEEECCccCCChH--H----H---HHHHhccCCEE
Confidence 13578888877653211 111 1348999999999997643 2 2 34556678889
Q ss_pred EEEEcCCChhh
Q 009048 197 LALTATAAPKV 207 (545)
Q Consensus 197 l~lTAT~~~~~ 207 (545)
++||||+....
T Consensus 222 l~LSATp~r~D 232 (237)
T 2fz4_A 222 LGLTATFERED 232 (237)
T ss_dssp EEEEESCC---
T ss_pred EEEecCCCCCC
Confidence 99999998654
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.72 E-value=9.6e-18 Score=165.46 Aligned_cols=119 Identities=12% Similarity=0.125 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHhC--CCccEEEEecchhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcC-CCc-EEEeccc
Q 009048 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVA 317 (545)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~IIf~~t~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-VLVaT~a 317 (545)
..++..|.+++... .+.++||||+++..++.+...|... |+.+..+||+++..+|..++++|.+| .++ +|++|.+
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 35666676666553 5678999999999999999999885 99999999999999999999999998 777 7899999
Q ss_pred cccccccCCCcEEEEeCCCCCHHHHHHHHhhccCCCCCCeEEEE
Q 009048 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (545)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~~~~i~~ 361 (545)
+|+|+|++.+++||+||+|+++..|.|++||++|.|+.+.+.+|
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~ 218 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEE
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEE
Confidence 99999999999999999999999999999999999987765443
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.65 E-value=5.8e-16 Score=149.64 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----C----CCeEEEEcChHHHHHHHHHHHHH-cCCceeEe
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----K----PGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~----~----~~~~lVi~P~~aL~~qq~~~l~~-~gi~~~~~ 108 (545)
.++++|.++++.+..|+++++.||||+|||.++.++++. . ...++++.|+++|+.|..+.+.. ++......
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 468899999999999999999999999999987777653 1 23789999999999999888865 22221100
Q ss_pred cccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccc-cccCCCCHHHHHHHHHH
Q 009048 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-SSWGHDFRPSYRKLSSL 187 (545)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i-~~~g~~fr~~~~~l~~l 187 (545)
.+... ...........+|+++||+++.. .+.. ....+++|||||||.+ .+.+ |. ...+..+
T Consensus 141 ~g~~~-------~~~~~~~~~~~~Ivv~Tpg~l~~-----~l~~--~l~~~~~lVlDEah~~~~~~~--~~--~~~l~~i 202 (235)
T 3llm_A 141 CGYSV-------RFESILPRPHASIMFCTVGVLLR-----KLEA--GIRGISHVIVDEIHERDINTD--FL--LVVLRDV 202 (235)
T ss_dssp EEEEE-------TTEEECCCSSSEEEEEEHHHHHH-----HHHH--CCTTCCEEEECCTTSCCHHHH--HH--HHHHHHH
T ss_pred EEEee-------chhhccCCCCCeEEEECHHHHHH-----HHHh--hhcCCcEEEEECCccCCcchH--HH--HHHHHHH
Confidence 00000 00001111346677777754432 1222 3567999999999984 3222 22 1245667
Q ss_pred HHhCCCcCEEEEEcCCChhh
Q 009048 188 RNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 188 ~~~~~~~~~l~lTAT~~~~~ 207 (545)
....++.+++++|||++...
T Consensus 203 ~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 203 VQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHCTTSEEEEEECSSCCHH
T ss_pred HhhCCCCeEEEEecCCCHHH
Confidence 77778999999999999876
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.41 E-value=2.2e-06 Score=93.78 Aligned_cols=77 Identities=18% Similarity=0.087 Sum_probs=61.4
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHH--HHHHHHHhc-----CCCeEEEEcChHHHHHHHH
Q 009048 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS--MCYQIPALA-----KPGIVLVVSPLIALMENQV 95 (545)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKT--l~~~lp~l~-----~~~~~lVi~P~~aL~~qq~ 95 (545)
...+...|.+.|+-..-.++|+.++..++.++.+++.||+|+||| +.++++.+. .+..+++++||..++.+..
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~ 213 (608)
T 1w36_D 134 EALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 (608)
T ss_dssp HHHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHH
Confidence 456777788776533337899999999999999999999999999 667787775 2347999999999988766
Q ss_pred HHHH
Q 009048 96 IGLK 99 (545)
Q Consensus 96 ~~l~ 99 (545)
+.+.
T Consensus 214 e~~~ 217 (608)
T 1w36_D 214 ESLG 217 (608)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5544
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.11 E-value=9e-06 Score=89.70 Aligned_cols=72 Identities=24% Similarity=0.167 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEcCCCchHHHHHH--H-HHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEe
Q 009048 37 AQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ--I-PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~d-~lv~apTGsGKTl~~~--l-p~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~ 108 (545)
..|.+.|.+|+..++..++ .+|+||+|+|||.+.. + -.+..+.++||++||..-+.+.+++|...+.+..-+
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRl 263 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 263 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEe
Confidence 3578999999999987775 5899999999995432 2 234567899999999999999999998877665444
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.95 E-value=7.9e-05 Score=81.72 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHhc--CCCeEEEEcChHHHHHHHHHHHHHcCCcee
Q 009048 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (545)
Q Consensus 36 ~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~--~lp~l~--~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~ 106 (545)
+..+.+.|.+|+..++.+.-+++.||+|+|||.+. ++..+. .+..+++++||...+.+..+++.+.|++..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~ 252 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVV 252 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEE
Confidence 34688999999999998778899999999999653 233333 467899999999999999999888776543
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00015 Score=81.48 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHhc--CCCeEEEEcChHHHHHHHHHHHHHcCCce
Q 009048 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~--lp~l~--~~~~~lVi~P~~aL~~qq~~~l~~~gi~~ 105 (545)
..+++.|.+|+..++.+.-++|.||+|+|||.+.. +..+. .+.++++++||...+.+..+++.+.|+..
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~i 431 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKV 431 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccE
Confidence 46789999999999887778999999999996532 22222 46789999999999999999998877654
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.75 E-value=0.00019 Score=80.67 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHhc--CCCeEEEEcChHHHHHHHHHHHHHcCCcee
Q 009048 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~--~lp~l~--~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~ 106 (545)
..+.+.|.+|+..++.+.-+++.||+|+|||.+. ++..+. .+..+++++||...+.+..+++...|++..
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vv 428 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVV 428 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEE
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceE
Confidence 4578999999999988878899999999999653 233333 467899999999999999999888776543
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.62 E-value=0.00021 Score=75.40 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=46.6
Q ss_pred cCCCCCCHHHHHHHHHHHcC----C-CEEEEcCCCchHHHHHH--HHHhc-CCC-eEEEEcChHHHHHHHHHH
Q 009048 34 FGHAQFRDKQLDAIQAVLSG----R-DCFCLMPTGGGKSMCYQ--IPALA-KPG-IVLVVSPLIALMENQVIG 97 (545)
Q Consensus 34 fg~~~~r~~Q~~~i~~il~g----~-d~lv~apTGsGKTl~~~--lp~l~-~~~-~~lVi~P~~aL~~qq~~~ 97 (545)
..+..|++.|.+++..++.. + .+++.||.|+|||.... +..+. .+. .+++++||...+....+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhh
Confidence 56788999999999987542 3 88999999999996432 22332 333 689999998877554433
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.48 E-value=0.00053 Score=74.18 Aligned_cols=59 Identities=14% Similarity=-0.015 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHh-cCCCeEEEEcChHHHHHHHHH
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPAL-AKPGIVLVVSPLIALMENQVI 96 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~--~lp~l-~~~~~~lVi~P~~aL~~qq~~ 96 (545)
.+++.|.+++..++.++.+++.+|+|+|||... ++-.+ ..+..+++++||...+....+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHh
Confidence 488999999999999899999999999999643 22222 356789999999988765433
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.38 E-value=0.025 Score=61.88 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHh-cC----CCeEEEEcChHHHHHHHHHHHHHc
Q 009048 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-AK----PGIVLVVSPLIALMENQVIGLKEK 101 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~--lp~l-~~----~~~~lVi~P~~aL~~qq~~~l~~~ 101 (545)
..|++.|.+|+.. .+..++|.|+.|||||.+.. +.-+ .. +..++++++|...+.+..+++.+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 4689999999983 36789999999999996543 2222 22 257999999999999888888763
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.86 E-value=0.0039 Score=61.69 Aligned_cols=126 Identities=11% Similarity=0.050 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHh--CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccccc
Q 009048 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (545)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (545)
.|+..|..++.. ..+.+++||++..+..+-+..+|...|++...+.|.....+ .+ -.++...+-+.|.+.+-|
T Consensus 109 GKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~~g 183 (328)
T 3hgt_A 109 GKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGINF 183 (328)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCT
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCCCC
Confidence 344444444432 24678999999999999999999999999999999854432 11 124555666668787878
Q ss_pred cc-----cCCCcEEEEeCCCCCHHH-HHHHHhhccCCC--C--CCeEEEEeccccHHHHHHHH
Q 009048 322 ID-----RKDVRLVCHFNIPKSMEA-FYQESGRAGRDQ--L--PSKSLLYYGMDDRRRMEFIL 374 (545)
Q Consensus 322 iD-----~p~v~~VI~~~~p~s~~~-y~Qr~GRagR~g--~--~~~~i~~~~~~d~~~~~~i~ 374 (545)
+| ....+.||.||..+++.. .+|.+-|+.|.| + +-..+.++...-.+.....+
T Consensus 184 in~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 184 TKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp TTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred cCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 86 577899999999998887 499999999974 2 34566667666555544333
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.72 E-value=0.011 Score=53.18 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=22.3
Q ss_pred HHHHHHHHHHH---------cCCCEEEEcCCCchHHHHH
Q 009048 41 DKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 41 ~~Q~~~i~~il---------~g~d~lv~apTGsGKTl~~ 70 (545)
+.|.+++..+. .|+.+++.+|+|+|||...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 45666665543 4678999999999999654
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.64 E-value=0.0054 Score=63.49 Aligned_cols=44 Identities=14% Similarity=-0.102 Sum_probs=33.7
Q ss_pred CEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
-.++.|+.|+|||...+- +......+|++|+++++.++.+.+.+
T Consensus 163 v~~I~G~aGsGKTt~I~~--~~~~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS--RVNFEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEECTTSCHHHHHHH--HCCTTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHH--HhccCCeEEEeCCHHHHHHHHHHhhh
Confidence 357899999999975432 22335679999999999888877754
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.31 E-value=0.042 Score=55.98 Aligned_cols=63 Identities=22% Similarity=0.177 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH----hc-CCCeEEEEcChHHHHHHHHHHHHH
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LA-KPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~----l~-~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
.+.|+|...+..+...+-+++..+-+.|||.+....+ +. .+..+++++|+..-+...++.++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 5899999999987655668999999999997644322 22 345799999999988777766554
No 106
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.86 E-value=0.059 Score=54.51 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
+.+++.+|+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46899999999999754
No 107
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.1 Score=51.72 Aligned_cols=18 Identities=6% Similarity=-0.084 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (545)
+..+++.||+|+|||.+.
T Consensus 45 ~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCEEEEECCCSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999864
No 108
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.78 E-value=0.067 Score=49.00 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 36999999999999753
No 109
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.48 E-value=0.044 Score=56.01 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=22.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEc
Q 009048 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~ 85 (545)
.+.+++.+|+|+|||.....-+-..+...+.+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~ 180 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS 180 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence 368999999999999866544433344444443
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.45 E-value=0.011 Score=55.64 Aligned_cols=37 Identities=24% Similarity=0.052 Sum_probs=24.9
Q ss_pred cCCCEEEEcCCCchHHHHHHHH---HhcCCCeEEEEcChH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLI 88 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp---~l~~~~~~lVi~P~~ 88 (545)
.|.-.++.+|+|+|||...+-- +..++.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 3455688999999999754321 223566788887754
No 111
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.41 E-value=0.072 Score=53.28 Aligned_cols=150 Identities=21% Similarity=0.166 Sum_probs=72.0
Q ss_pred HHHHHHc----CCCEEEEcCCCchHHHHHHH---HHhcCCCeEEEEcC---hHHHHHHHHHHHHHcCCceeEe-cccccH
Q 009048 46 AIQAVLS----GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSP---LIALMENQVIGLKEKGIAGEFL-SSTQTM 114 (545)
Q Consensus 46 ~i~~il~----g~d~lv~apTGsGKTl~~~l---p~l~~~~~~lVi~P---~~aL~~qq~~~l~~~gi~~~~~-~~~~~~ 114 (545)
.++.++. |.=+++.|++|+|||...+- .+...+..+++++. ...|+....... .++....+ .+..+.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~--~~v~~~~l~~g~Ls~ 112 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDL--TSINMHDLESGRLDD 112 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHH--HCCCHHHHHHTCCCH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHh--hCCCHHHHhcCCCCH
Confidence 4455553 34578889999999954332 22236778888874 444443322222 12221111 122222
Q ss_pred HHHHHHHH---hhhcCCCCccEEE-ECcccccChhhHHHHHhhhccC-CccEEEEeccccccccC------CCCHHHHHH
Q 009048 115 QVKTKIYE---DLDSGKPSLRLLY-VTPELTATPGFMSKLKKIHSRG-LLNLVAIDEAHCISSWG------HDFRPSYRK 183 (545)
Q Consensus 115 ~~~~~~~~---~~~~~~~~~~il~-~tpe~~~t~~~~~~l~~~~~~~-~l~~iViDEaH~i~~~g------~~fr~~~~~ 183 (545)
.....+.. .+.. ..+.+ -+|. +........+..+.... .+++||||-.+.+..-+ ...+.....
T Consensus 113 ~e~~~l~~a~~~l~~----~~l~I~d~~~-~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~ 187 (338)
T 4a1f_A 113 DQWENLAKCFDHLSQ----KKLFFYDKSY-VRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRE 187 (338)
T ss_dssp HHHHHHHHHHHHHHH----SCEEEECCTT-CCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----CCeEEeCCCC-CcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHH
Confidence 22222221 1211 22333 2332 11122333444444443 69999999999886421 112222333
Q ss_pred HHHHHHhCCCcCEEEEEcCC
Q 009048 184 LSSLRNYLPDVPILALTATA 203 (545)
Q Consensus 184 l~~l~~~~~~~~~l~lTAT~ 203 (545)
|..+...+ ++|++++|-.-
T Consensus 188 LK~lAkel-~vpVi~lsQl~ 206 (338)
T 4a1f_A 188 LKTLAREL-EIPIIALVQLN 206 (338)
T ss_dssp HHHHHHHH-TSCEEEEEECC
T ss_pred HHHHHHHc-CCeEEEEEecC
Confidence 44333332 78888887653
No 112
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.32 E-value=0.11 Score=46.27 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
..+++.||+|+|||...
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999754
No 113
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.29 E-value=0.052 Score=53.75 Aligned_cols=43 Identities=21% Similarity=0.167 Sum_probs=24.5
Q ss_pred CccEEEEecccccc-ccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChh
Q 009048 158 LLNLVAIDEAHCIS-SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (545)
Q Consensus 158 ~l~~iViDEaH~i~-~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~ 206 (545)
...+++|||+|.+. . .....+..+....+....+.++++....
T Consensus 105 ~~~vliiDEi~~l~~~------~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLA------ESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGH------HHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcH------HHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 46899999999986 2 1223344444444433345555555443
No 114
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.28 E-value=0.12 Score=56.08 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHH----HhcCC-CeEEEEcChHHHHHHHHHHHHH
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP----ALAKP-GIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp----~l~~~-~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
.+.|+|..++..+-..+-+++.+|-|+|||.+...- ++..+ ..+++++|+...+.+....++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 478999999998755677899999999999754322 22233 4899999999998887776665
No 115
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.21 E-value=0.058 Score=56.39 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=58.1
Q ss_pred HHHHHHc----CCCEEEEcCCCchHHHHHH-HHH--hc-CCCeEEEEcChHHHHHHHHHHHH--HcCCceeEec-ccccH
Q 009048 46 AIQAVLS----GRDCFCLMPTGGGKSMCYQ-IPA--LA-KPGIVLVVSPLIALMENQVIGLK--EKGIAGEFLS-STQTM 114 (545)
Q Consensus 46 ~i~~il~----g~d~lv~apTGsGKTl~~~-lp~--l~-~~~~~lVi~P~~aL~~qq~~~l~--~~gi~~~~~~-~~~~~ 114 (545)
.++.++. |.-+++.|++|+|||...+ +.. .. .+..+++++.-..- .+...++. ..|+....+. +....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~~~~~~~~~~~l~~g~l~~ 270 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRMLCAEGNINAQNLRTGKLTP 270 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHHHHHHTCCHHHHHTSCCCH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence 4555553 3557889999999995433 222 12 34578888742221 22333322 2333321111 11222
Q ss_pred HHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009048 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (545)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (545)
.....+...+..-. ...+.+..+..+........+..+.....+++||||+.+.+..
T Consensus 271 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 271 EDWGKLTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHHHH-SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 22222111111000 1234333322222222333444444445689999999999874
No 116
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.09 E-value=0.045 Score=54.71 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEcCCCchHHHHHH
Q 009048 39 FRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 39 ~r~~Q~~~i~~il----~g~---d~lv~apTGsGKTl~~~ 71 (545)
+.|||.+++..+. +|+ -.++.||.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4688888876654 343 38999999999997654
No 117
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.01 E-value=0.024 Score=49.60 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (545)
.|+.+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999643
No 118
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.01 E-value=0.073 Score=52.82 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=30.9
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHH
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~l 72 (545)
+...|..+.-.+...+.|++...+...+|.... ......+.+++.+|+|+|||.....
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~--~~~~~~~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCC--TTCCCCCEEEEECSSSSCHHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHh--cCCCCCCeEEEECCCCCcHHHHHHH
Confidence 445566666667777777664311000000000 0001135699999999999976543
No 119
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.99 E-value=0.13 Score=45.62 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (545)
...+++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357899999999999654
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.94 E-value=0.06 Score=50.25 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (545)
++.+++.||+|+|||...
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999754
No 121
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.93 E-value=0.047 Score=56.94 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=70.5
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHH-HH--Hhc-CCCeEEEEcC---hHHHHHHHHHHHHHcCCceeEe-ccccc
Q 009048 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-IP--ALA-KPGIVLVVSP---LIALMENQVIGLKEKGIAGEFL-SSTQT 113 (545)
Q Consensus 46 ~i~~il~g----~d~lv~apTGsGKTl~~~-lp--~l~-~~~~~lVi~P---~~aL~~qq~~~l~~~gi~~~~~-~~~~~ 113 (545)
.++.++.| .-+++.|++|+|||...+ +. +.. .+..+++++. ...|+...... ..++....+ .+...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~--~~~i~~~~l~~g~l~ 266 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCS--EARIDMNRVRLGQLT 266 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHH--HTTCCTTTCCGGGCC
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHH--HcCCCHHHHhCCCCC
Confidence 45555533 456889999999995433 22 122 3557888774 33333322211 234432222 12223
Q ss_pred HHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccccc--CC--CCHH-HH----HHH
Q 009048 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW--GH--DFRP-SY----RKL 184 (545)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~--g~--~fr~-~~----~~l 184 (545)
......+......-. ...+.+..+..+....+...+........+++||||..+.+..- +. .-|. .+ ..|
T Consensus 267 ~~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~L 345 (444)
T 2q6t_A 267 DRDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGL 345 (444)
T ss_dssp HHHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHH
Confidence 333222222111100 12333332222222333444444444446899999999998753 21 1121 11 222
Q ss_pred HHHHHhCCCcCEEEEEcC
Q 009048 185 SSLRNYLPDVPILALTAT 202 (545)
Q Consensus 185 ~~l~~~~~~~~~l~lTAT 202 (545)
..+... -++|+++++-.
T Consensus 346 k~lAke-~~v~vi~lsql 362 (444)
T 2q6t_A 346 KALARE-LGIPIIALSQL 362 (444)
T ss_dssp HHHHHH-HTSCEEEEEEC
T ss_pred HHHHHH-hCCeEEEEecC
Confidence 222222 27888888754
No 122
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.91 E-value=0.21 Score=48.77 Aligned_cols=18 Identities=17% Similarity=0.012 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
..+++.||+|+|||....
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997653
No 123
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.84 E-value=0.075 Score=56.52 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=27.5
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCC
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~ 204 (545)
...+|+|||+|.+..... .....+..+... .+.|+++.+++..
T Consensus 148 ~~~vliIDEid~l~~~~~---~~l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDR---GGVGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTST---THHHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhH---HHHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 357899999999876321 122334444443 4678888888754
No 124
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.70 E-value=0.042 Score=59.72 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHH
Q 009048 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~ 91 (545)
.++..|.+++..+..- ...++.|+-|.|||.+.-+.+-.....++|.+|+.+=+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~ 230 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKAST 230 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSC
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHH
Confidence 5788999999998863 34688999999999665444433345578899987654
No 125
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.70 E-value=0.096 Score=51.40 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=14.0
Q ss_pred CEEEEcCCCchHHHHH
Q 009048 55 DCFCLMPTGGGKSMCY 70 (545)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (545)
.+++.||+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999754
No 126
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.68 E-value=0.12 Score=49.92 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=31.9
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCchHHHHHHH
Q 009048 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~i--l~g~d~lv~apTGsGKTl~~~l 72 (545)
...|..+.-.+...+.|.+..... -...+.+..+ ..++.+++.||+|+|||.....
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELP---LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHH---HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHH---hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 344555665666666666543110 0111222222 2356799999999999976543
No 127
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.64 E-value=0.064 Score=53.15 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
+..+++.||+|+|||....
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3689999999999997543
No 128
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.61 E-value=0.13 Score=44.38 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=16.9
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 009048 51 LSGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~ 70 (545)
..+.++++.+|+|+|||...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 35678999999999999754
No 129
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.54 E-value=0.075 Score=51.19 Aligned_cols=19 Identities=16% Similarity=0.072 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
+.+++.+|+|+|||.....
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4689999999999976543
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.52 E-value=0.2 Score=50.34 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (545)
+..+++.||+|+|||...
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999754
No 131
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.45 E-value=0.23 Score=45.23 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
+.+++.+|+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999754
No 132
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.44 E-value=0.057 Score=56.35 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=16.7
Q ss_pred CCEEEEcCCCchHHHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~ 74 (545)
..+++.+|+|+|||.....-+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 368999999999998765443
No 133
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.39 E-value=0.3 Score=49.14 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.5
Q ss_pred CEEEEcCCCchHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (545)
.+++.||+|+|||....
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999997543
No 134
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.32 E-value=0.45 Score=46.12 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (545)
++.+++.||+|+|||.....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 56899999999999986543
No 135
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.29 E-value=0.1 Score=58.30 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=66.0
Q ss_pred CccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc-cccccccCCCcEEEE
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVCH 332 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GiD~p~v~~VI~ 332 (545)
+.+++|.++|+.-+.++++.+.+. |+.+..+||+++..+|...++.+.+|+.+|+|+|.. +...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 457999999999998888877653 789999999999999999999999999999999985 445678889998885
Q ss_pred eC
Q 009048 333 FN 334 (545)
Q Consensus 333 ~~ 334 (545)
-.
T Consensus 497 DE 498 (780)
T 1gm5_A 497 DE 498 (780)
T ss_dssp ES
T ss_pred cc
Confidence 43
No 136
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.23 E-value=0.22 Score=49.38 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.0
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
+.+++.+|+|+|||+....
T Consensus 46 ~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp SEEEEESSSSSCHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 6799999999999976543
No 137
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.22 E-value=0.11 Score=47.02 Aligned_cols=37 Identities=24% Similarity=0.135 Sum_probs=25.6
Q ss_pred cCCCEEEEcCCCchHHHHHH-HH--HhcCCCeEEEEcChH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLI 88 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~-lp--~l~~~~~~lVi~P~~ 88 (545)
.|+-.++.+|.|+|||...+ +. +...+..++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 35557899999999997643 22 123567788888874
No 138
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.17 E-value=0.28 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=17.8
Q ss_pred cCCCEEEEcCCCchHHHHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp~ 74 (545)
.++.+++.||+|+|||+....-+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHH
Confidence 35679999999999998654433
No 139
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.12 E-value=0.17 Score=48.10 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
.+.+++.+|+|+|||....
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3578999999999997654
No 140
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.09 E-value=0.41 Score=47.26 Aligned_cols=122 Identities=8% Similarity=0.037 Sum_probs=58.1
Q ss_pred HHHHHHHc----CCCEEEEcCCCchHHHHH-HHH--HhcCCCeEEEEcC---hHHHHHHHHHHHHHcCCceeEeccc---
Q 009048 45 DAIQAVLS----GRDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSP---LIALMENQVIGLKEKGIAGEFLSST--- 111 (545)
Q Consensus 45 ~~i~~il~----g~d~lv~apTGsGKTl~~-~lp--~l~~~~~~lVi~P---~~aL~~qq~~~l~~~gi~~~~~~~~--- 111 (545)
..++.++. |.-+++.|++|+|||... ++. +...+..+++++- ...++....... .++....+..+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~--~~i~~~~l~~~~~~ 133 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTA--GSINAQKIKAARRD 133 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHH--TTCCHHHHHSCHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHH--cCCCHHHHhcCCCC
Confidence 34555553 355788999999999543 332 2234567888873 333433222111 23322111111
Q ss_pred ---ccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCcc--EEEEeccccccc
Q 009048 112 ---QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN--LVAIDEAHCISS 172 (545)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~--~iViDEaH~i~~ 172 (545)
............+.. ..+.+..+..+....+...+........++ +||||=.+.+..
T Consensus 134 l~~~~~~~l~~a~~~l~~----~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISN----SNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp HCSSCHHHHHHHHHHHHT----SCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBC
T ss_pred CCHHHHHHHHHHHHHHhC----CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCC
Confidence 011111111111211 234333322222233444444444444588 999999998864
No 141
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.08 E-value=0.19 Score=52.30 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=16.8
Q ss_pred CCEEEEcCCCchHHHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~ 74 (545)
+.+++.||+|+|||+....-+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia 188 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVA 188 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 579999999999998654433
No 142
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.90 E-value=0.14 Score=50.54 Aligned_cols=45 Identities=7% Similarity=0.064 Sum_probs=27.8
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
+...++||||||.+... ....|.+.....|..-++.|.++-+..+
T Consensus 81 ~~~kvviIdead~lt~~------a~naLLk~LEep~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ------AANAFLKALEEPPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp SSSEEEEETTGGGBCHH------HHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEeccHHHhCHH------HHHHHHHHHhCCCCCeEEEEEECChHhC
Confidence 44789999999998642 2244555666655544555555544333
No 143
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.85 E-value=0.37 Score=47.86 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999754
No 144
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.83 E-value=0.14 Score=51.54 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.9
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
+.+++.+|+|+|||+....
T Consensus 85 ~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCEEEECSTTSCHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHH
Confidence 5799999999999976543
No 145
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.80 E-value=0.051 Score=59.86 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHH-hc----CCCeEEEEcChHHHHHHHHHHHHH
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~--lp~-l~----~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
.|++.|.+++.. .+..++|.|+.|||||.+.. +.- +. ....+++|++|+..+.+..+++.+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 478999999986 36789999999999996543 211 11 346799999999999998888876
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.70 E-value=0.35 Score=47.35 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=25.6
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
...++||||+|.+... ....|..+....+...++.++++.+...
T Consensus 110 ~~~vliiDe~~~l~~~------~~~~L~~~le~~~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 110 SFKIIFLDEADALTQD------AQQALRRTMEMFSSNVRFILSCNYSSKI 153 (327)
T ss_dssp SCEEEEEETGGGSCHH------HHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCeEEEEeCCCcCCHH------HHHHHHHHHHhcCCCCeEEEEeCCcccc
Confidence 3679999999998541 2244555555554433455555544433
No 147
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.65 E-value=0.078 Score=58.91 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHh-c----CCCeEEEEcChHHHHHHHHHHHHH
Q 009048 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-A----KPGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 37 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~--lp~l-~----~~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
..|++.|.+|+.. .+..++|.|+.|||||.+.. +.-+ . .+..+|+|+.|+..+.+..+++..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4689999999986 35789999999999996533 2222 2 235799999999998888777765
No 148
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.65 E-value=0.038 Score=50.94 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.8
Q ss_pred CEEEEcCCCchHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (545)
-.++.|+.|||||....
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 35899999999997543
No 149
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.52 E-value=0.12 Score=47.96 Aligned_cols=37 Identities=19% Similarity=-0.022 Sum_probs=24.7
Q ss_pred CCCEEEEcCCCchHHHHHHHHH---hcCCCeEEEEcChHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~---l~~~~~~lVi~P~~a 89 (545)
|+=.++.+|.|+|||...+--+ ...+.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 3445688999999997644222 345778999988764
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.41 E-value=0.65 Score=42.71 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.7
Q ss_pred CEEEEcCCCchHHHHH
Q 009048 55 DCFCLMPTGGGKSMCY 70 (545)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (545)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999653
No 151
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.34 E-value=0.33 Score=48.67 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (545)
++.+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999754
No 152
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.22 E-value=0.18 Score=51.63 Aligned_cols=78 Identities=8% Similarity=0.086 Sum_probs=65.0
Q ss_pred CCccEEEEecchhhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccc----cccccCCCcE
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVRL 329 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~----~GiD~p~v~~ 329 (545)
.+.++||.++|+.-+.++++.+.+ .|+.+..+||+.+..+|....+.+..|..+|+|+|.-.- .-++..++++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 456799999999999999999988 588999999999999998888999999999999997422 1255568888
Q ss_pred EEEeC
Q 009048 330 VCHFN 334 (545)
Q Consensus 330 VI~~~ 334 (545)
||.=.
T Consensus 143 iViDE 147 (414)
T 3oiy_A 143 VFVDD 147 (414)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 88533
No 153
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.18 E-value=0.11 Score=61.14 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH---HHHhcC------CCeEEEEcChHHHHHHHHHHHHH
Q 009048 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ---IPALAK------PGIVLVVSPLIALMENQVIGLKE 100 (545)
Q Consensus 38 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~---lp~l~~------~~~~lVi~P~~aL~~qq~~~l~~ 100 (545)
.+++.|.++|..- +++++|.|+.|||||.+.. +-.+.. ...++++++|++.+.+..+++..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 5899999999874 8899999999999997643 222222 24699999999998887776654
No 154
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.93 E-value=0.22 Score=45.50 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=67.2
Q ss_pred CCEEEEcCCCchHHHHHHH---HHhcCCCeEEEEcChHH-HHHHHHHHHHHcCCceeEecccccH--HHHHHHHHhhhcC
Q 009048 54 RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIA-LMENQVIGLKEKGIAGEFLSSTQTM--QVKTKIYEDLDSG 127 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~~a-L~~qq~~~l~~~gi~~~~~~~~~~~--~~~~~~~~~~~~~ 127 (545)
..+++..++|.|||.+++- -++-.+.+++|+.-.+. .-..-...+..+++.......+... ......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~------- 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREAD------- 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHH-------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHH-------
Confidence 4789999999999987653 34456778888854331 0000011122233322221111100 000000
Q ss_pred CCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhh
Q 009048 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (545)
Q Consensus 128 ~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~ 207 (545)
......-+....+....+.+++||+||.-....+|.--. ..+..+....|...-+.+|+-..+..
T Consensus 102 ------------~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 102 ------------TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp ------------HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCCHH
T ss_pred ------------HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCcHH
Confidence 000011223333444446799999999977666663222 33444555566666677777766654
Q ss_pred H
Q 009048 208 Q 208 (545)
Q Consensus 208 ~ 208 (545)
.
T Consensus 167 l 167 (196)
T 1g5t_A 167 I 167 (196)
T ss_dssp H
T ss_pred H
Confidence 3
No 155
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.93 E-value=1.1 Score=41.60 Aligned_cols=51 Identities=14% Similarity=-0.017 Sum_probs=30.4
Q ss_pred cCCCEEEEcCCCchHHHHH-HHH--HhcCCCeEEEEcChHHHHHHHHHHHHHcCC
Q 009048 52 SGRDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~-~lp--~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi 103 (545)
.|.-+++.+|+|+|||... ++. ....++.+++++--.. ..+..+.+...|+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGW 75 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCC
Confidence 4567889999999999653 332 2235667777764322 2344444444443
No 156
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.88 E-value=0.45 Score=48.53 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=34.9
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il--~g~d~lv~apTGsGKTl~~~l 72 (545)
+...|..++-.++..+.|++..-+.-.+| +.+..+- -.+.+|+.||+|+|||+.+-.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~p---e~f~~~gi~~prGvLL~GPPGTGKTllAkA 201 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHP---ELFESLGIAQPKGVILYGPPGTGKTLLARA 201 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCH---HHHHHHTCCCCCCEEEESCSSSSHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCCceEEeCCCCCCHHHHHHH
Confidence 45667777777777777776432211111 1222221 237899999999999986543
No 157
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.76 E-value=0.083 Score=48.29 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=24.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHH---hcCCCeEEEEcChH
Q 009048 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~---l~~~~~~lVi~P~~ 88 (545)
|+=.++.+|+|+|||...+--+ ..++.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 4556889999999996644222 23577888888874
No 158
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.75 E-value=0.31 Score=49.00 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=21.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhcCCCeEEEE
Q 009048 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi 84 (545)
.+.+++.+|+|+|||.....-+-..+...+.+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 35799999999999986554333333333333
No 159
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.73 E-value=0.14 Score=50.46 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (545)
++.+++.||||+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999654
No 160
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.69 E-value=0.67 Score=46.04 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=25.7
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCCh
Q 009048 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (545)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~ 205 (545)
..++||||+|.+... ....|..+....+....+.++++...
T Consensus 111 ~~viiiDe~~~l~~~------~~~~L~~~le~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 111 FKLIILDEADAMTNA------AQNALRRVIERYTKNTRFCVLANYAH 151 (340)
T ss_dssp CEEEEETTGGGSCHH------HHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ceEEEEeCCCCCCHH------HHHHHHHHHhcCCCCeEEEEEecCcc
Confidence 679999999998642 22445555666665445555555443
No 161
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.41 E-value=0.31 Score=50.59 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+.+++.||+|+|||....
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999997544
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.31 E-value=0.56 Score=46.40 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=16.0
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
..+++.+|+|+|||.....
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 4799999999999976543
No 163
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.28 E-value=1.5 Score=43.73 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=25.6
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCCh
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~ 205 (545)
+...+|||||+|.+.. .....+..+....|...++.++++-..
T Consensus 118 ~~~~vliiDe~~~l~~------~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR------HSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECGGGSCH------HHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECcchhcH------HHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 3467999999999754 223445555555554445555555443
No 164
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.28 E-value=1.1 Score=45.03 Aligned_cols=86 Identities=20% Similarity=0.189 Sum_probs=39.3
Q ss_pred CCCCCcccccccccCCCCCCChhHHHHHHHHHhcCCCCCCH-------------HHHHHHHHHHc------CCCEEEEcC
Q 009048 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRD-------------KQLDAIQAVLS------GRDCFCLMP 61 (545)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~-------------~Q~~~i~~il~------g~d~lv~ap 61 (545)
|++...+-.+....... .....+.+...+.+.||...+.. .=...++.++. |.-+++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~ 82 (366)
T 1xp8_A 4 MSKDATKEISAPTDAKE-RSKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGP 82 (366)
T ss_dssp --------------CCH-HHHHHHHHHHHHHHHHCTTSSCCTTSCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEES
T ss_pred cccccccccCCCCCHHH-HHHHHHHHHHHHHHHhCCCcceeccccccccCceecCCCHHHHHHhCCCCccCCcEEEEEcC
Confidence 55555555444433321 11222345555566677543211 11345677776 245788999
Q ss_pred CCchHHHHHH-HHH--hcCCCeEEEEcCh
Q 009048 62 TGGGKSMCYQ-IPA--LAKPGIVLVVSPL 87 (545)
Q Consensus 62 TGsGKTl~~~-lp~--l~~~~~~lVi~P~ 87 (545)
+|+|||...+ +.+ ...++.+++++.-
T Consensus 83 pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 83 ESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 9999995432 221 2345677777743
No 165
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.26 E-value=0.18 Score=46.31 Aligned_cols=32 Identities=19% Similarity=0.020 Sum_probs=22.6
Q ss_pred CCCEEEEcCCCchHHHHHH-HHHhcCCCeEEEEc
Q 009048 53 GRDCFCLMPTGGGKSMCYQ-IPALAKPGIVLVVS 85 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp~l~~~~~~lVi~ 85 (545)
|.-+++.+|+|+|||.... +.. ..++.++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEE
Confidence 4567899999999996443 333 4456677766
No 166
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.16 E-value=1.7 Score=44.88 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=59.5
Q ss_pred CEEEEcCCCchHHHHHH-HHH-h-cCCCeEEEEc--ChHHHHHHHHHHHHH-cCCceeEecccccHHHHHHHHHhhhcCC
Q 009048 55 DCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~-l-~~~~~~lVi~--P~~aL~~qq~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (545)
-+++.+|+|+|||.... +.. + ..+..++++. +.+.-+.+|...+.. .|++............
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~------------ 166 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIE------------ 166 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHH------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHH------------
Confidence 46778999999996543 222 2 2456666655 444444455555443 3444332221111100
Q ss_pred CCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCcCEEEEEcCCChhh
Q 009048 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKV 207 (545)
Q Consensus 129 ~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lTAT~~~~~ 207 (545)
+ ....+.. ......++++||++-+... +.+ ......+..+... .|+.-++.++|+.....
T Consensus 167 ------------i----~~~al~~-a~~~~~DvvIIDTaGr~~~-~~d-~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a 227 (433)
T 3kl4_A 167 ------------I----AKKGVDI-FVKNKMDIIIVDTAGRHGY-GEE-TKLLEEMKEMYDVLKPDDVILVIDASIGQKA 227 (433)
T ss_dssp ------------H----HHHHHHH-TTTTTCSEEEEEECCCSSS-CCT-THHHHHHHHHHHHHCCSEEEEEEEGGGGGGG
T ss_pred ------------H----HHHHHHH-HHhcCCCEEEEECCCCccc-cCC-HHHHHHHHHHHHhhCCcceEEEEeCccchHH
Confidence 0 0011111 1223478999999976430 011 1222334333332 35556678888865444
No 167
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.92 E-value=0.64 Score=48.21 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=36.8
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il--~g~d~lv~apTGsGKTl~~~l 72 (545)
+...|..++-.++..+.|++..-+.-.+| +.+..+- -.+.+|+.+|+|+|||+..-.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~p---e~f~~~Gi~pprGILLyGPPGTGKTlLAkA 262 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSP---ERFATLGIDPPKGILLYGPPGTGKTLCARA 262 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCH---HHHHHHTCCCCSEEEECSCTTSSHHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCH---HHHHHCCCCCCCceEeeCCCCCcHHHHHHH
Confidence 45778888888888888887532211111 2222221 246899999999999986543
No 168
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.89 E-value=1.3 Score=45.95 Aligned_cols=151 Identities=13% Similarity=0.093 Sum_probs=70.2
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHH-H--HHhcCCCeEEEEcChHHHHHHHHHHHHH--cCCceeEeccc-----
Q 009048 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSST----- 111 (545)
Q Consensus 46 ~i~~il~g----~d~lv~apTGsGKTl~~~-l--p~l~~~~~~lVi~P~~aL~~qq~~~l~~--~gi~~~~~~~~----- 111 (545)
.++.++.| .-+++.|++|+|||...+ + -+...+..+++++---.- .+.+.++.. .|+....+..+
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~-~ql~~R~~~~~~~i~~~~l~~g~~~l~ 264 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK-KENIKRLIVTAGSINAQKIKAARRDFA 264 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT-THHHHHHHHHHSCCCHHHHHHTGGGTC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcccCCCC
Confidence 45555533 457889999999995433 2 222346688888742211 122223222 23322111111
Q ss_pred -ccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCcc--EEEEeccccccccC-CCCHH-HHH----
Q 009048 112 -QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN--LVAIDEAHCISSWG-HDFRP-SYR---- 182 (545)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~--~iViDEaH~i~~~g-~~fr~-~~~---- 182 (545)
............+.. ..+.+..+.-+....+...+........++ +||||=.+.+..-+ ..-|. .+.
T Consensus 265 ~~~~~~l~~a~~~l~~----~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~ 340 (444)
T 3bgw_A 265 SEDWGKLSMAIGEISN----SNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISR 340 (444)
T ss_dssp CSCHHHHHHHHHHHHT----SCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHH
Confidence 011111111122221 234333221222233444444444444689 99999999886432 12232 122
Q ss_pred HHHHHHHhCCCcCEEEEEcC
Q 009048 183 KLSSLRNYLPDVPILALTAT 202 (545)
Q Consensus 183 ~l~~l~~~~~~~~~l~lTAT 202 (545)
.|..+.+. -++|+++++-.
T Consensus 341 ~Lk~lAke-~~v~vi~lsql 359 (444)
T 3bgw_A 341 DLKKMARE-LDVVVIALSQL 359 (444)
T ss_dssp HHHHHHHH-HTCEEEEEEEC
T ss_pred HHHHHHHH-hCCeEEEEecC
Confidence 22233222 27888888764
No 169
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.88 E-value=0.23 Score=48.54 Aligned_cols=19 Identities=21% Similarity=0.025 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
+.+++.+|+|+|||.....
T Consensus 37 ~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp SEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999976543
No 170
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.69 E-value=1.2 Score=45.05 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.5
Q ss_pred CCEEE--EcCCCchHHHHH
Q 009048 54 RDCFC--LMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv--~apTGsGKTl~~ 70 (545)
..+++ .||+|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35677 899999999754
No 171
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.58 E-value=0.42 Score=49.39 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=32.6
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il--~g~d~lv~apTGsGKTl~~~l 72 (545)
+...|..++-.++..+.|++..-+.-.+| +.+..+- -.+-+|+.||+|+|||+..-.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p---~~f~~~g~~~prGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNP---EIFQRVGIKPPKGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCH---HHHHHHCCCCCCEEEEESCTTSSHHHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCCeEEEECCCCCcHHHHHHH
Confidence 45566666666666666665432110111 1122211 236799999999999986543
No 172
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.50 E-value=0.86 Score=43.10 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
.+.+++.+|+|+|||....
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3568999999999997654
No 173
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.49 E-value=0.35 Score=56.17 Aligned_cols=78 Identities=8% Similarity=0.086 Sum_probs=65.2
Q ss_pred CCccEEEEecchhhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccc----cccccCCCcE
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVRL 329 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~----~GiD~p~v~~ 329 (545)
.+..+||.++|+.-+.++++.|.+ .++.+..+||+++..+|....+.+..|..+|||+|.-.- .-++..++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456799999999999999999998 577899999999998888889999999999999996321 1155678999
Q ss_pred EEEeC
Q 009048 330 VCHFN 334 (545)
Q Consensus 330 VI~~~ 334 (545)
||.-.
T Consensus 200 lViDE 204 (1104)
T 4ddu_A 200 VFVDD 204 (1104)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 88533
No 174
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.46 E-value=0.35 Score=50.94 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=19.9
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCCCeEE
Q 009048 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVL 82 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~~~~~l 82 (545)
+.+++.+|+|+|||+....-+-..+...+
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~~~~fv 267 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANETGAFFF 267 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSEEE
T ss_pred CcEEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 57999999999999876543333333333
No 175
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.17 E-value=0.4 Score=44.96 Aligned_cols=37 Identities=22% Similarity=0.004 Sum_probs=26.0
Q ss_pred CCCEEEEcCCCchHHHHHHHH---HhcCCCeEEEEcChHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp---~l~~~~~~lVi~P~~a 89 (545)
|+=.++.+|.|+|||...+-- +..++.+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 555678899999999654422 2345678888888763
No 176
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.12 E-value=2.5 Score=43.61 Aligned_cols=51 Identities=18% Similarity=0.032 Sum_probs=30.1
Q ss_pred CEEEEcCCCchHHHHHH-HH-Hhc-CCCeEEEEc--ChHHHHHHHHHHHHH-cCCce
Q 009048 55 DCFCLMPTGGGKSMCYQ-IP-ALA-KPGIVLVVS--PLIALMENQVIGLKE-KGIAG 105 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp-~l~-~~~~~lVi~--P~~aL~~qq~~~l~~-~gi~~ 105 (545)
-+++++++|+|||.... +. .+. .+.+++++. |.+.-+.+|...+.. .|++.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV 158 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE
Confidence 46789999999996543 22 222 345666665 555555555555443 34443
No 177
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.59 E-value=0.42 Score=53.24 Aligned_cols=76 Identities=11% Similarity=0.015 Sum_probs=43.3
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHH
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIAL 90 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL 90 (545)
+...|..+...++..+.|++..-+.-.+|.+..-+. +...+.+++.+|+|+|||+.+-.-+-..+.. ++.+-.-+|
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-f~~v~~~~l 547 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQAN-FISIKGPEL 547 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-EEECCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEecCCCCCchHHHHHHHHHhCCc-eEEeccchh
Confidence 445677777778888888876544322222211000 0123578999999999998665444444443 333333344
No 178
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.57 E-value=1.3 Score=51.83 Aligned_cols=76 Identities=9% Similarity=0.077 Sum_probs=64.7
Q ss_pred CCccEEEEecchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc-cccccccCCCcEEE
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GiD~p~v~~VI 331 (545)
.+.+++|.|+|+.-+.++++.+.+ .++.+..+++..+..++...++.+..|+.+|+|+|.. +...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 455899999999999999888875 3678999999999999999999999999999999964 45557888888887
Q ss_pred E
Q 009048 332 H 332 (545)
Q Consensus 332 ~ 332 (545)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 179
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.49 E-value=2.6 Score=38.59 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=22.1
Q ss_pred cCCCEEEEcCCCchHHHHH-HHHHh--cCCCeEEEEc
Q 009048 52 SGRDCFCLMPTGGGKSMCY-QIPAL--AKPGIVLVVS 85 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~-~lp~l--~~~~~~lVi~ 85 (545)
.|.-+++.+|+|+|||... ++... ..++.++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3567889999999999543 33322 2355666665
No 180
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.14 E-value=3.8 Score=40.05 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=20.1
Q ss_pred CCEEEEcCCCchHHHHHH-HHHh--cCCCeEEEEc
Q 009048 54 RDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp~l--~~~~~~lVi~ 85 (545)
+-+.+.+|+|+|||.... +... ..++.++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 346789999999995433 3332 2355565554
No 181
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.04 E-value=2.3 Score=42.00 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=29.7
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHhc-CCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH
Q 009048 7 AMQSTSQTQKNKPLHEKEALVKLLRWHF-GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~l~~~f-g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~ 71 (545)
||.....+..+..+..++...+.|++.. .. .....+++.||+|+|||....
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~--------------~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQP--------------RDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT--------------TCCCCEEEECSTTSSHHHHHH
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhC--------------CCCCeEEEECCCCCCHHHHHH
Confidence 4444444444555555566666666532 10 022349999999999997653
No 182
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.91 E-value=1 Score=44.51 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=27.6
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHH-HHHHh-c-C------CCeEEEEcChH
Q 009048 46 AIQAVLS-----GRDCFCLMPTGGGKSMCY-QIPAL-A-K------PGIVLVVSPLI 88 (545)
Q Consensus 46 ~i~~il~-----g~d~lv~apTGsGKTl~~-~lp~l-~-~------~~~~lVi~P~~ 88 (545)
.++.++. |.-+++.+|+|+|||... ++..- . . ++.+++++--.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4566664 356789999999999543 34332 2 2 56788887543
No 183
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.82 E-value=1.9 Score=43.16 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCCCCCHHH-------------HHHHHHHHc------CCCEEEEcCCCchHHHHHH-HH--HhcCCCeE
Q 009048 24 EALVKLLRWHFGHAQFRDKQ-------------LDAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIV 81 (545)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q-------------~~~i~~il~------g~d~lv~apTGsGKTl~~~-lp--~l~~~~~~ 81 (545)
+.....+.+.||-..+.+.. ...++.++. |.-+++.+|+|+|||...+ +. +...+..+
T Consensus 15 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~v 94 (356)
T 1u94_A 15 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 94 (356)
T ss_dssp HHHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 34455566668765433221 245777775 3567899999999996443 22 22345677
Q ss_pred EEEcC
Q 009048 82 LVVSP 86 (545)
Q Consensus 82 lVi~P 86 (545)
+++..
T Consensus 95 lyid~ 99 (356)
T 1u94_A 95 AFIDA 99 (356)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 77775
No 184
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.79 E-value=0.55 Score=46.91 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=27.7
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHHHHH-HHHh--c------CCCeEEEEcChH
Q 009048 46 AIQAVLSG-----RDCFCLMPTGGGKSMCYQ-IPAL--A------KPGIVLVVSPLI 88 (545)
Q Consensus 46 ~i~~il~g-----~d~lv~apTGsGKTl~~~-lp~l--~------~~~~~lVi~P~~ 88 (545)
.++.++.| .-+++.+|+|+|||...+ +..- . .++.+++|+--.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 35666643 457899999999995433 3332 2 356788887543
No 185
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.69 E-value=2.3 Score=39.35 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=22.3
Q ss_pred cCCCEEEEcCCCchHHHHHH-HHH--hc------CCCeEEEEc
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ-IPA--LA------KPGIVLVVS 85 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~-lp~--l~------~~~~~lVi~ 85 (545)
.|.-+.+.+|+|+|||.... +.. +. ....++++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 34678899999999996544 333 12 145567665
No 186
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.58 E-value=4.4 Score=39.57 Aligned_cols=18 Identities=22% Similarity=-0.116 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (545)
++.+++.||.|+|||...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 578899999999999643
No 187
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.56 E-value=0.55 Score=48.21 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=34.3
Q ss_pred cccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 009048 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il--~g~d~lv~apTGsGKTl~~~l 72 (545)
.+...|..++-.++..+.|++..-+.-.+| +.+..+- -.+-+|+.+|+|+|||+.+-.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~p---e~f~~~Gi~~prGvLLyGPPGTGKTlLAkA 235 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHP---ELYEEMGIKPPKGVILYGAPGTGKTLLAKA 235 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCC---HHHHHHTCCCCSEEEEESSTTTTHHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCCCCceECCCCchHHHHHHH
Confidence 355677777766777777776432110011 1222221 136799999999999986543
No 188
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.50 E-value=1.4 Score=42.54 Aligned_cols=34 Identities=18% Similarity=0.028 Sum_probs=22.0
Q ss_pred cCCCEEEEcCCCchHHHHHH-HHHhc--C-CCeEEEEc
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ-IPALA--K-PGIVLVVS 85 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~-lp~l~--~-~~~~lVi~ 85 (545)
.|.-+++.||+|+|||.... +.... . +..+++++
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45678899999999996543 22221 2 33677765
No 189
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.47 E-value=2.9 Score=39.99 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=16.9
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 009048 50 VLSGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 50 il~g~d~lv~apTGsGKTl~~ 70 (545)
+..|.-+++.+|+|+|||...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHH
Confidence 446778899999999999654
No 190
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.20 E-value=0.65 Score=43.00 Aligned_cols=38 Identities=24% Similarity=0.044 Sum_probs=24.7
Q ss_pred cCCCEEEEcCCCchHHHHHHHHH---hcCCCeEEEEcChHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp~---l~~~~~~lVi~P~~a 89 (545)
.|.=.++.+|.|+|||...+--+ ...+..++|+.|.+.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 35556889999999997433212 234667888888664
No 191
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.94 E-value=1.3 Score=39.29 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=60.5
Q ss_pred EEEcCCCchHHHHHHHHHhc--CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEE
Q 009048 57 FCLMPTGGGKSMCYQIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134 (545)
Q Consensus 57 lv~apTGsGKTl~~~lp~l~--~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 134 (545)
++..+....|-. .+.-.+. ..+++||+++++..+......|...|+.+..+++..+...+..+......+. .+++
T Consensus 12 ~~~~~~~~~K~~-~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~--~~vL 88 (175)
T 2rb4_A 12 YVLCEHRKDKYQ-ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK--EKVL 88 (175)
T ss_dssp EEECSSHHHHHH-HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS--CSEE
T ss_pred EEEcCChHhHHH-HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEE
Confidence 444444334543 2333333 3578999999999999999999999999999999999999998888887764 7788
Q ss_pred EECc
Q 009048 135 YVTP 138 (545)
Q Consensus 135 ~~tp 138 (545)
++|.
T Consensus 89 vaT~ 92 (175)
T 2rb4_A 89 ITTN 92 (175)
T ss_dssp EECC
T ss_pred EEec
Confidence 8883
No 192
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=88.82 E-value=1.4 Score=38.57 Aligned_cols=59 Identities=12% Similarity=0.218 Sum_probs=52.3
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEEC
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~t 137 (545)
..+++||+++++.-+......|...|+.+..+++..+...+.........+. .+++++|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vlv~T 92 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE--YRYLVAT 92 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEC
Confidence 4678999999999999999999999999999999999999988888887764 7787777
No 193
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.66 E-value=0.96 Score=47.67 Aligned_cols=34 Identities=12% Similarity=-0.126 Sum_probs=22.6
Q ss_pred CCCEEEEcCCCchHHHHHH-HHH--hcC-CCeEEEEcC
Q 009048 53 GRDCFCLMPTGGGKSMCYQ-IPA--LAK-PGIVLVVSP 86 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp~--l~~-~~~~lVi~P 86 (545)
|.-+++.|++|+|||...+ +.. ... +..+++++-
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 4557889999999995433 322 223 557888874
No 194
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.66 E-value=5.5 Score=38.95 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 009048 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 41 ~~Q~~~i~~il~g~d~lv~apTGsGKTl~~ 70 (545)
..+.+.+.. +....+++.||.|+|||...
T Consensus 19 ~~el~~L~~-l~~~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 19 EKEIEKLKG-LRAPITLVLGLRRTGKSSII 47 (357)
T ss_dssp HHHHHHHHH-TCSSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHH-hcCCcEEEECCCCCCHHHHH
Confidence 334444444 43357889999999999643
No 195
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.56 E-value=1.2 Score=41.89 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+.+++.+|+|+|||....
T Consensus 50 ~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 348999999999997544
No 196
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.53 E-value=1.4 Score=43.33 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=18.5
Q ss_pred HHHHHHHcC-----CCEEEEcCCCchHHHHH
Q 009048 45 DAIQAVLSG-----RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 45 ~~i~~il~g-----~d~lv~apTGsGKTl~~ 70 (545)
..++.++.| .-+++.+|+|+|||...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 345666643 45789999999999543
No 197
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=88.44 E-value=2.4 Score=39.93 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=50.7
Q ss_pred CCccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc-------ccccccC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-------GMGIDRK 325 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-------~~GiD~p 325 (545)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+...+...+ .+..+|+|+|.-- ..+++..
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999999998887764 78899999998876543322 3568999999531 1234555
Q ss_pred CCcEEEE
Q 009048 326 DVRLVCH 332 (545)
Q Consensus 326 ~v~~VI~ 332 (545)
++++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 5665553
No 198
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=88.43 E-value=2.9 Score=37.62 Aligned_cols=72 Identities=24% Similarity=0.255 Sum_probs=57.6
Q ss_pred CchHHHHHHHHHhc-CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEEC
Q 009048 63 GGGKSMCYQIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (545)
Q Consensus 63 GsGKTl~~~lp~l~-~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~t 137 (545)
...|.. +++-.+. .++++||+++++.-+......|+..|+.+..+++..+...+.........+. .+++++|
T Consensus 39 ~~~K~~-~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT 111 (191)
T 2p6n_A 39 EEAKMV-YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK--KDVLVAT 111 (191)
T ss_dssp GGGHHH-HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS--CSEEEEC
T ss_pred hHHHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CEEEEEc
Confidence 456653 3444443 3568999999999999999999999999999999999999988888887764 6677666
No 199
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.27 E-value=1.9 Score=47.93 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (545)
+.++++.+|+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 467999999999999754
No 200
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.03 E-value=1.3 Score=44.47 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=21.9
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEE
Q 009048 52 SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi 84 (545)
.+..+++.+|+|+|||.....-+-..+...+.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 346899999999999987654443333333333
No 201
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.90 E-value=1.9 Score=39.41 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=51.8
Q ss_pred ccEEEEecchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc------ccccccCCC
Q 009048 259 TCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKDV 327 (545)
Q Consensus 259 ~~~IIf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~------~~GiD~p~v 327 (545)
.++||.|+++.-+.++++.+.+. ++.+..++|+.+...+. +.+..+..+|+|+|.-. ...++..++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 47999999999999999888764 78899999999876654 34455778999999631 122445556
Q ss_pred cEEEE
Q 009048 328 RLVCH 332 (545)
Q Consensus 328 ~~VI~ 332 (545)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66553
No 202
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=87.42 E-value=5.3 Score=36.49 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=54.0
Q ss_pred cCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 76 ~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
..++.+||++|++.-+......|...|+.+..+++..+...+..+......+. .+++++|.
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vlvaT~ 89 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE--VRVLVATD 89 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS--CCEEEECT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC--CeEEEecC
Confidence 45789999999999999999999999999999999999999999988888774 77888874
No 203
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.28 E-value=1.2 Score=47.16 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=61.3
Q ss_pred CccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc------cccccccCCCcEEE
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA------FGMGIDRKDVRLVC 331 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a------~~~GiD~p~v~~VI 331 (545)
.+.+||.++++.-+.+....|.+.|+.+..+|++.+..++..+...+..|..+|+++|.- +...++..++.+||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 357899999999999999999999999999999999999999999999999999999952 11223345566655
No 204
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.26 E-value=1.9 Score=38.13 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=53.0
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
..+++||+++++.-+......|...|+.+..+++..+...+.........+. .+++++|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vLvaT~ 89 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 89 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC--CcEEEECC
Confidence 4578999999999999999999999999999999999999998888887764 77888883
No 205
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.23 E-value=1 Score=55.02 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHc------CCCEEEEcCCCchHHHHHH---HHHhcCCCeEEEEcChHHH
Q 009048 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIAL 90 (545)
Q Consensus 46 ~i~~il~------g~d~lv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~aL 90 (545)
.++.++. ++.+++.+|+|+|||.... ..+...+..++++..--++
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 3777776 5789999999999996542 2334467788888865443
No 206
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.23 E-value=3.7 Score=45.71 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.0
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
+.+|+.+|+|+|||+..-.
T Consensus 239 ~GILL~GPPGTGKT~LAra 257 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5799999999999986543
No 207
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.07 E-value=2.1 Score=44.72 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+.+++.+|+|+|||+...
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999998654
No 208
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.03 E-value=1.6 Score=38.12 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=52.0
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEEC
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~t 137 (545)
..+++||+++++.-+......|+..|+.+..+++..+...+..+......+. .+++++|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T 87 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS--SRILIST 87 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC--CEEEEEc
Confidence 4678999999999999999999999999999999999999988888887664 6777777
No 209
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.99 E-value=0.1 Score=49.07 Aligned_cols=34 Identities=21% Similarity=0.078 Sum_probs=22.8
Q ss_pred CCCEEEEcCCCchHHH-HHHHHH---hcCCCeEEEEcC
Q 009048 53 GRDCFCLMPTGGGKSM-CYQIPA---LAKPGIVLVVSP 86 (545)
Q Consensus 53 g~d~lv~apTGsGKTl-~~~lp~---l~~~~~~lVi~P 86 (545)
|.-+++.|++|+|||. |.++.+ ...+..+++++-
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4568899999999994 444332 233566777763
No 210
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.87 E-value=1.1 Score=40.65 Aligned_cols=34 Identities=24% Similarity=0.087 Sum_probs=24.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHH----hcCCCeEEEEcCh
Q 009048 53 GRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPL 87 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~----l~~~~~~lVi~P~ 87 (545)
|+=.++.+|.|+|||.- ++-+ ...+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHcCCeEEEEccc
Confidence 55678999999999943 2222 2356778888887
No 211
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.69 E-value=1.7 Score=49.13 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+++++.||+|+|||....
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 479999999999997543
No 212
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.36 E-value=1.1 Score=48.18 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=54.0
Q ss_pred CccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH--HcCCCcEEEecc
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW--ISSRKQVVVATV 316 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f--~~g~~~VLVaT~ 316 (545)
.+.+||.++++.-+++....|.+.|+.+..++|+++..++..+...+ ..+..+||++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 35799999999999999999999999999999999999998888888 478899999998
No 213
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.31 E-value=4.7 Score=40.18 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=27.8
Q ss_pred HHHHHHHc------CCCEEEEcCCCchHHHHH-HHHH--hcCCCeEEEEcC
Q 009048 45 DAIQAVLS------GRDCFCLMPTGGGKSMCY-QIPA--LAKPGIVLVVSP 86 (545)
Q Consensus 45 ~~i~~il~------g~d~lv~apTGsGKTl~~-~lp~--l~~~~~~lVi~P 86 (545)
..++.++. |.-+++.+|+|+|||... ++.. ...++.++++.-
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35677776 356789999999999643 3322 234667777764
No 214
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.52 E-value=1.7 Score=40.24 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=43.6
Q ss_pred CCccEEEEecchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (545)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+...+...+ ...+|+|+|.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 3457999999999999999988763 67889999999876654332 3578999996
No 215
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=85.42 E-value=1.7 Score=38.97 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=49.2
Q ss_pred CCchHHHHHHHHHh---cCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEEC
Q 009048 62 TGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (545)
Q Consensus 62 TGsGKTl~~~lp~l---~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~t 137 (545)
....|-.. ++-.+ ...+++||+++++.-+......|+..|+.+..+++..+...+..+......+. .+++++|
T Consensus 28 ~~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vLvaT 103 (185)
T 2jgn_A 28 EESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVAT 103 (185)
T ss_dssp CGGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS--SSEEEEE
T ss_pred CcHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEc
Confidence 34567532 22222 24678999999999999999999999999999999998888888888777664 6677776
No 216
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.36 E-value=2.8 Score=39.05 Aligned_cols=70 Identities=9% Similarity=0.125 Sum_probs=50.0
Q ss_pred CccEEEEecchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc-----cc-cccccCCC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FG-MGIDRKDV 327 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-----~~-~GiD~p~v 327 (545)
+..+||.++|+.-+.++++.+.+ .++.+..++|+.+.......+. ...+|+|+|.- +. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45699999999999998877765 4889999999998776554433 24789999952 11 12355566
Q ss_pred cEEE
Q 009048 328 RLVC 331 (545)
Q Consensus 328 ~~VI 331 (545)
++||
T Consensus 178 ~~lV 181 (242)
T 3fe2_A 178 TYLV 181 (242)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 6655
No 217
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.29 E-value=0.73 Score=39.53 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=17.7
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (545)
.+.++++.+|+|+|||..+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHH
Confidence 567899999999999987653
No 218
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=84.54 E-value=7.1 Score=40.92 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
+.+++.+|+|+|||+....
T Consensus 65 ~GvLL~GppGtGKTtLara 83 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARA 83 (499)
T ss_dssp SEEEEECSSSSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999986543
No 219
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=84.09 E-value=1.6 Score=42.98 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (545)
.|.-+++.+|+|+|||...
T Consensus 122 ~gsviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp ESEEEEEECSCSSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456789999999999643
No 220
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=82.52 E-value=1.3 Score=40.73 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 009048 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 39 ~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~ 70 (545)
.+..|..+++.+..|.-+.+.+|.|+|||...
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34567888999988999999999999999654
No 221
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.29 E-value=3.7 Score=36.86 Aligned_cols=55 Identities=22% Similarity=0.161 Sum_probs=42.3
Q ss_pred CccEEEEecchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (545)
+.++||.++++.-+.++++.+.+. +..+..++|+.+....... ..+..+|+|+|.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~ 130 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATP 130 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCH
Confidence 457999999999999998888753 6788999999886553322 245678999996
No 222
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.17 E-value=0.76 Score=47.41 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=30.7
Q ss_pred cCCCEEEEcCCCchHHHHH--HHHHh-cCCCeEEEEcChHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCY--QIPAL-AKPGIVLVVSPLIALME 92 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~--~lp~l-~~~~~~lVi~P~~aL~~ 92 (545)
...++++.|+||+|||... +++.+ ..+..++|+=|--++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 3468999999999999875 44443 45677888888877753
No 223
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=82.12 E-value=2.9 Score=38.70 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=40.3
Q ss_pred CccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (545)
+.++||.++++.-+.++++.+.+. ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 457999999999999999988764 47889999987655433222 4678999995
No 224
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.06 E-value=4 Score=36.63 Aligned_cols=56 Identities=21% Similarity=0.147 Sum_probs=42.6
Q ss_pred CCccEEEEecchhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (545)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+.......+. ...+|+|+|.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 3457999999999999999999875 467888999887654433222 3578999995
No 225
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=81.98 E-value=1.5 Score=43.08 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=28.3
Q ss_pred CEEEEcCCCchHHHHHH-HHH--hcC--CCeEEEEcChHHHHHHHHHHHHHcCC
Q 009048 55 DCFCLMPTGGGKSMCYQ-IPA--LAK--PGIVLVVSPLIALMENQVIGLKEKGI 103 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~--l~~--~~~~lVi~P~~aL~~qq~~~l~~~gi 103 (545)
-+++.+|+|+|||...+ +.+ ... ++.+++|..--++-.. +++++|+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGv 80 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGV 80 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCC
Confidence 47889999999995432 221 222 6788888865555321 3455554
No 226
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=81.91 E-value=2.1 Score=42.83 Aligned_cols=45 Identities=20% Similarity=0.087 Sum_probs=29.0
Q ss_pred HHHHHHHc------CCCEEEEcCCCchHHHHHH-HHHh--cCCCeEEEEcChHH
Q 009048 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVSPLIA 89 (545)
Q Consensus 45 ~~i~~il~------g~d~lv~apTGsGKTl~~~-lp~l--~~~~~~lVi~P~~a 89 (545)
..++.++. |.-+++.+|+|+|||...+ +... ..++.+++|..-.+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 35667776 3467899999999995432 2222 24667888775443
No 227
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=81.72 E-value=3.3 Score=38.06 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=45.2
Q ss_pred CCccEEEEecchhhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc------ccccccCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKDV 327 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~------~~GiD~p~v 327 (545)
.+.++||.++|+.-+.++++.+.+ .++.+..++|+.+...+... +. ...+|+|+|.-- ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 455799999999999999999887 37788889998775544322 22 357899999521 123345555
Q ss_pred cEEE
Q 009048 328 RLVC 331 (545)
Q Consensus 328 ~~VI 331 (545)
++||
T Consensus 169 ~~lV 172 (228)
T 3iuy_A 169 TYLV 172 (228)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 5555
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.71 E-value=6.3 Score=38.23 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (545)
++-+.+++|+|+|||...
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 446788999999999644
No 229
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=81.59 E-value=4.6 Score=45.17 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~ 74 (545)
++.+++.+|+|+|||.....-+
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 4679999999999998654433
No 230
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=81.43 E-value=4.9 Score=39.12 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=53.8
Q ss_pred cCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 76 ~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
..++.+||+++++.-+......|...|+.+..+++..+...+..+......+. .+++++|.
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~--~~vLVaT~ 86 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE--VRVLVATD 86 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS--CCEEEECS
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC--ceEEEEec
Confidence 34789999999999999999999999999999999999999998888888775 78888884
No 231
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.80 E-value=2.9 Score=38.87 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=36.5
Q ss_pred CCccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (545)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+.... ...+..+..+|+|+|.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp 157 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTP 157 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECH
Confidence 3457999999999999999988764 5677888887654332 3344567789999994
No 232
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=80.77 E-value=2 Score=45.66 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (545)
|..+++.+|+|+|||.....
T Consensus 108 g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 66799999999999976543
No 233
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=80.64 E-value=14 Score=38.56 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=19.7
Q ss_pred CEEEEcCCCchHHHHHH-HHHh--cCCCeEEEE
Q 009048 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVV 84 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~l--~~~~~~lVi 84 (545)
-+.+++|+|+|||...- |..+ ..++.+++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 46789999999996443 2222 235666665
No 234
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=80.24 E-value=15 Score=38.09 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.0
Q ss_pred HHHHHH---cCCCEEEEcCCCchHHHHH
Q 009048 46 AIQAVL---SGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il---~g~d~lv~apTGsGKTl~~ 70 (545)
+|+.+. +|+.+++.+|.|.|||...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHH
Confidence 566554 7888999999999999653
No 235
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=79.42 E-value=2.2 Score=45.07 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=22.9
Q ss_pred CCHHHHHHHHH-HHcCCCEEEEcCCCchHHHH
Q 009048 39 FRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMC 69 (545)
Q Consensus 39 ~r~~Q~~~i~~-il~g~d~lv~apTGsGKTl~ 69 (545)
+.+.+..-+.. +..|..+++.+|||||||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 45555555544 44678899999999999964
No 236
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=79.31 E-value=6.9 Score=47.13 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=51.8
Q ss_pred HHHHHHc------CCCEEEEcCCCchHHHHHH-HH--HhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHH
Q 009048 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (545)
Q Consensus 46 ~i~~il~------g~d~lv~apTGsGKTl~~~-lp--~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~ 116 (545)
.++.++. |.-+++.+|+|+|||...+ +. +...++.+++++---.+- +.. .+..|+..
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~-ql~--A~~lGvd~----------- 784 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD-PIY--ARKLGVDI----------- 784 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC-HHH--HHHTTCCG-----------
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHH-HHH--HHHcCCCh-----------
Confidence 4555554 3568899999999995433 22 223456777776432221 111 23333321
Q ss_pred HHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009048 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (545)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (545)
-++++..+..+ ...+..+........+++||||+...+.
T Consensus 785 --------------~~L~i~~~~~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 785 --------------DNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp --------------GGCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred --------------hheEEecCCcH--HHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 12344443322 2233333333334568999999999886
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=79.17 E-value=2.2 Score=41.85 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=19.3
Q ss_pred HHHHcCCCEEEEcCCCchHHHHHH
Q 009048 48 QAVLSGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 48 ~~il~g~d~lv~apTGsGKTl~~~ 71 (545)
..+..++++++.+|+|+|||....
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 344568899999999999997554
No 238
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=79.15 E-value=11 Score=36.98 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=27.4
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHH-HHhCCCcCEEEEEcCCChhhHH
Q 009048 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPILALTATAAPKVQK 209 (545)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l-~~~~~~~~~l~lTAT~~~~~~~ 209 (545)
.+++++|.+...... ... ...|..+ +...|+.+++++.+|.......
T Consensus 212 ~d~vliDtaG~~~~~-~~l---~~eL~~i~ral~~de~llvLDa~t~~~~~~ 259 (328)
T 3e70_C 212 IDVVLIDTAGRSETN-RNL---MDEMKKIARVTKPNLVIFVGDALAGNAIVE 259 (328)
T ss_dssp CSEEEEEECCSCCTT-TCH---HHHHHHHHHHHCCSEEEEEEEGGGTTHHHH
T ss_pred chhhHHhhccchhHH-HHH---HHHHHHHHHHhcCCCCEEEEecHHHHHHHH
Confidence 567889988764321 112 2333333 2334778888888887765544
No 239
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.67 E-value=1.1 Score=43.09 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=31.1
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHH-HHHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~-Q~~~i~~il--~g~d~lv~apTGsGKTl~~~l 72 (545)
+...|..+.-.+++.+.|++.+- .|. ..+++..+- -.+.+++.+|+|+|||+..-.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~----~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLaka 63 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL----APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT----HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH----HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 45678888888888888876432 121 223344332 123499999999999976543
No 240
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=78.61 E-value=11 Score=35.52 Aligned_cols=71 Identities=15% Similarity=0.102 Sum_probs=50.0
Q ss_pred CccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc-----c--ccccccCC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----F--GMGIDRKD 326 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-----~--~~GiD~p~ 326 (545)
+.++||.++|+.-+.++++.+++. +..+..++|+......... +..+ .+|+|+|.- + ..+++..+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 456999999999999999888763 6678889998876654332 3334 899999941 1 12356666
Q ss_pred CcEEEE
Q 009048 327 VRLVCH 332 (545)
Q Consensus 327 v~~VI~ 332 (545)
+++||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 776663
No 241
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=78.11 E-value=7.5 Score=39.04 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=52.2
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
..+.+||+++++.-+....+.|++.|+.+..+++..+...+.........+. .+++++|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS--SCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC--CCEEEECC
Confidence 4678999999999999999999999999999999999999988888887765 66766664
No 242
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=78.05 E-value=6.8 Score=39.13 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~ 74 (545)
...+++.+|+|+|||.....-+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 4579999999999998665433
No 243
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=77.70 E-value=4.2 Score=39.10 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
...+++.||+|+|||....
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999997654
No 244
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.69 E-value=10 Score=38.44 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=25.6
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHHH-HH-Hhc-------CCCeEEEEcC
Q 009048 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQ-IP-ALA-------KPGIVLVVSP 86 (545)
Q Consensus 46 ~i~~il~-----g~d~lv~apTGsGKTl~~~-lp-~l~-------~~~~~lVi~P 86 (545)
.++.++. |.-+.+.+|+|+|||.... +. ... ..+.++++.-
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 3555653 3567899999999996443 22 122 2456777754
No 245
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=77.61 E-value=46 Score=31.04 Aligned_cols=181 Identities=13% Similarity=0.129 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccc----cChhhHHHHHhhhccCCccEEEE
Q 009048 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPGFMSKLKKIHSRGLLNLVAI 164 (545)
Q Consensus 89 aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~----~t~~~~~~l~~~~~~~~l~~iVi 164 (545)
.++....+.+.+.|.....................+.... ++-++..|... ........+.. ..+-+|++
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~~~~----~~iPvV~~ 105 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQH--IDGLIVEPTKSALQTPNIGYYLNLEK----NGIPFAMI 105 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTC--CSEEEECCSSTTSCCTTHHHHHHHHH----TTCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCC--CCEEEEecccccccCCcHHHHHHHHh----cCCCEEEE
Confidence 4555555567778888777766555554444555554443 45555554322 11222333322 23677888
Q ss_pred ecccc---ccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHH------HHHHHhcCCCCeEEeccCCCCcceee
Q 009048 165 DEAHC---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK------DVMESLCLQNPLVLKSSFNRPNLFYE 235 (545)
Q Consensus 165 DEaH~---i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~------~i~~~l~~~~~~~~~~~~~r~ni~~~ 235 (545)
|-... +..-+.|....-..+.+.+.......+.+++......... +.....++... ......
T Consensus 106 ~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~---------~~~~~~ 176 (298)
T 3tb6_A 106 NASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFPS---------PDMIVT 176 (298)
T ss_dssp SSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCC---------GGGEEE
T ss_pred ecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCC---------cceEEE
Confidence 74321 1112233333334444444444666777777655422211 11111111110 011111
Q ss_pred eecccchhhHHHHHHHHHHhCCCc-cEEEEecchhhHHHHHHHHHhCCCc
Q 009048 236 VRYKDLLDDAYADLCSVLKANGDT-CAIVYCLERTTCDELSAYLSAGGIS 284 (545)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~-~~IIf~~t~~~~~~l~~~L~~~g~~ 284 (545)
.............+.+++...+.. +.-|||.+...+..+...|.+.|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 177 FTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp ECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred ecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 111111111256677777776542 6788898888888888999887753
No 246
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=77.41 E-value=2.4 Score=47.80 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.6
Q ss_pred CEEEEcCCCchHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (545)
.+++.||||+|||....
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997653
No 247
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=77.08 E-value=44 Score=32.03 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=20.6
Q ss_pred CCCEEEEcCCCchHHHHHH-HHHh--cCCCeEEEEc
Q 009048 53 GRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp~l--~~~~~~lVi~ 85 (545)
++-+.+.+++|+|||.... +..+ ..++.++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4456678999999995433 3332 2356666654
No 248
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=76.95 E-value=19 Score=33.62 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.6
Q ss_pred CEEEEcCCCchHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (545)
-+++.|++|||||.....
T Consensus 34 ~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp EEEEESCGGGTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999976543
No 249
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=76.61 E-value=2.8 Score=38.38 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=35.9
Q ss_pred CCccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (545)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+....... + ...+|+|+|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp 139 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTP 139 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECH
Confidence 3457999999999999999888753 6788999998765543322 1 2378999985
No 250
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=76.49 E-value=36 Score=36.90 Aligned_cols=82 Identities=28% Similarity=0.218 Sum_probs=64.8
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhcc
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~ 156 (545)
.+.++||+++++.-+....+.|+..|+++..+++......+..+......+. ++++++|.- ...| ...
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~--~~VLVaT~~--l~~G--------lDi 511 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK--YDVLVGINL--LREG--------LDI 511 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS--CSEEEESCC--CSTT--------CCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC--eEEEEecch--hhCC--------ccc
Confidence 5679999999999999999999999999999999999999988888887765 678887742 2222 123
Q ss_pred CCccEEEEeccccc
Q 009048 157 GLLNLVAIDEAHCI 170 (545)
Q Consensus 157 ~~l~~iViDEaH~i 170 (545)
..++++|+-+++..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 34788888887653
No 251
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=76.03 E-value=40 Score=34.42 Aligned_cols=42 Identities=26% Similarity=0.159 Sum_probs=24.8
Q ss_pred CEEEEcCCCchHHHHHH-HH-Hh-cC-CCeEEEEc--ChHHHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ-IP-AL-AK-PGIVLVVS--PLIALMENQVI 96 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp-~l-~~-~~~~lVi~--P~~aL~~qq~~ 96 (545)
.+++++++|+|||.... +. .+ .+ +.+++++. |.+..+.+|..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~ 149 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE 149 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH
Confidence 46677999999996543 22 22 23 55666665 55544444443
No 252
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=75.98 E-value=2.3 Score=43.58 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHc--CCCEEEEcCCCchHHHH
Q 009048 39 FRDKQLDAIQAVLS--GRDCFCLMPTGGGKSMC 69 (545)
Q Consensus 39 ~r~~Q~~~i~~il~--g~d~lv~apTGsGKTl~ 69 (545)
+.+.+..++..++. |.-+++.+|||||||..
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 45667777777664 33578999999999964
No 253
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.69 E-value=15 Score=45.13 Aligned_cols=97 Identities=15% Similarity=0.194 Sum_probs=52.7
Q ss_pred HHHHHHHc------CCCEEEEcCCCchHHHHHH-HHH--hcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHH
Q 009048 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ 115 (545)
Q Consensus 45 ~~i~~il~------g~d~lv~apTGsGKTl~~~-lp~--l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~ 115 (545)
..++.++. |.-+++.+|+|+|||...+ +.+ ...++.+++++---++-. . ..+.+|+..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~--~-~a~~lGvd~---------- 435 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP--I-YARKLGVDI---------- 435 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCH--H-HHHHTTCCT----------
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHH--H-HHHHcCCCH----------
Confidence 45677765 3567899999999996433 221 234567788774333211 1 133344321
Q ss_pred HHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009048 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (545)
Q Consensus 116 ~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (545)
-++++..|..+ ...+..+..+.....+++||||....+.
T Consensus 436 ---------------~~L~I~~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 436 ---------------DNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ---------------TTCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ---------------HHeEEeCCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 12333333211 1223333333334568999999999886
No 254
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=75.40 E-value=3.1 Score=40.20 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=30.9
Q ss_pred CcccccccccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 009048 5 PLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~ 70 (545)
..||.....+..+..+.-.+...+.|.+...- -....+++.||+|+|||...
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT--------------TCCCCEEEESSSSSSHHHHH
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhC--------------CCCCeEEEECcCCcCHHHHH
Confidence 45666555555555555556666666553211 01235999999999999754
No 255
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=73.99 E-value=3.1 Score=43.76 Aligned_cols=27 Identities=37% Similarity=0.472 Sum_probs=21.4
Q ss_pred HHHHHHcCCCEEEEcCCCchHHHHHHH
Q 009048 46 AIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 46 ~i~~il~g~d~lv~apTGsGKTl~~~l 72 (545)
++.++..+.++++.||+|+|||.....
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHhcCCeeEeecCchHHHHHHHHH
Confidence 444556789999999999999986543
No 256
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=73.97 E-value=1.9 Score=42.28 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=27.0
Q ss_pred HHHHHHHH----cCCCEEEEcCCCchHHHHH-HHHHhcCCCeEEEEcC
Q 009048 44 LDAIQAVL----SGRDCFCLMPTGGGKSMCY-QIPALAKPGIVLVVSP 86 (545)
Q Consensus 44 ~~~i~~il----~g~d~lv~apTGsGKTl~~-~lp~l~~~~~~lVi~P 86 (545)
..++..+. .|+-+.+++|+|+|||... ++.-+. .|.+++.+|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~ 159 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFAN 159 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGG
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEec
Confidence 34555443 5677889999999999644 334344 676655443
No 257
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=73.95 E-value=4.7 Score=42.11 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=39.9
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEEcChHHHHHHHHHHHHHc
Q 009048 52 SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~aL~~qq~~~l~~~ 101 (545)
.|....+.+.||||||++..--+-..++.+|||+|....+.+..+.|+.+
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhh
Confidence 34567889999999998643333344678999999999999999999985
No 258
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=73.83 E-value=8 Score=38.67 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=53.1
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
..+.+||+++++.-+......|.+.|+.+..+++......+..+......+. .+++++|.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 324 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK--EKVLVTTN 324 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC--CcEEEEcC
Confidence 3578999999999999999999999999999999999999999998888765 67877774
No 259
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=73.79 E-value=5.4 Score=41.90 Aligned_cols=71 Identities=8% Similarity=0.058 Sum_probs=48.2
Q ss_pred CccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccccc-----cc-c-ccCC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-----MG-I-DRKD 326 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~-----~G-i-D~p~ 326 (545)
+.++||.|+++.-+.+++..+.+. ++.+..+||+.+...+...+. ...+|+|+|.-.- .| + .+.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 567999999999999988888764 899999999987655432221 2378999996321 22 3 5667
Q ss_pred CcEEEE
Q 009048 327 VRLVCH 332 (545)
Q Consensus 327 v~~VI~ 332 (545)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888874
No 260
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=73.78 E-value=24 Score=32.65 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.2
Q ss_pred CC-CEEEEcCCCchHHHHHH
Q 009048 53 GR-DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~-d~lv~apTGsGKTl~~~ 71 (545)
|+ .+++.++.|.|||...+
T Consensus 5 g~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHH
Confidence 44 58899999999997643
No 261
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=73.62 E-value=2.5 Score=34.10 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=32.8
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (545)
.+.++++||.+-..+...+..|.+.|+++..+.||+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4568999999988899999999999999999999873
No 262
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=73.55 E-value=8.9 Score=37.50 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=51.9
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
..+.+||+++++.-+....+.|++.|+.+..+++..+...+..+......+. .+++++|.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK--IRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS--SSEEEECT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCC--CeEEEECC
Confidence 3568999999999999999999999999999999999999988888887664 67777763
No 263
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=73.54 E-value=2.1 Score=42.53 Aligned_cols=18 Identities=28% Similarity=0.157 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+-+++.+|||+|||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 457899999999997543
No 264
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=73.32 E-value=2.5 Score=33.49 Aligned_cols=37 Identities=14% Similarity=0.406 Sum_probs=32.6
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (545)
++.++++||.+-..+...+..|.+.|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999998899999999999999999999863
No 265
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=73.30 E-value=7.8 Score=36.12 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=41.6
Q ss_pred CccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (545)
+.++||.++|+.-+.++++.+.+. ++.+..++|+.+....... .....+|+|+|.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE----VQMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH----HSSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH----hCCCCCEEEECH
Confidence 357999999999999998887753 5778889998876543322 235678999996
No 266
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=73.01 E-value=21 Score=35.20 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=53.1
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
..+++||+++++.-+....+.|...|+.+..++++.....+..+......+. .+++++|.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 308 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 308 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTC--CSEEEESC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--CcEEEECC
Confidence 5689999999999999999999999999999999999999988888887764 67888874
No 267
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.95 E-value=2.2 Score=43.92 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=37.8
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHH-HHHHHHHH--cCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEE
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q-~~~i~~il--~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lVi 84 (545)
+...|..+.-.++..+.|++..-+ |.. -+.+..+- -.+.+|+.||+|+|||+..-.-|-..+...+.+
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~----pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVL----PMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHH----HHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCChHhcCcHHHHHHHHHHHHHH----HHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 455677777777777777664211 111 11122211 136799999999999986543333333333333
No 268
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=72.92 E-value=2.1 Score=38.02 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|+-+++++|+|+|||....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678899999999997543
No 269
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=72.75 E-value=8.8 Score=38.28 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=52.8
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
..+.+||+++++.-+....+.|+..|+.+..+++......+..+......+. .+++++|.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~ 316 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK--VRTLVCSD 316 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS--SSEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcC
Confidence 4578999999999999999999999999999999999999998888887764 77888884
No 270
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.67 E-value=10 Score=38.48 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=53.6
Q ss_pred CCccEEEEecchhhHHHHHHHHHhC-CC---cEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc-c-----cccccCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAG-GI---SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-G-----MGIDRKD 326 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~-g~---~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-~-----~GiD~p~ 326 (545)
.+.++||.|+++.-+.++++.+.+. +. .+..+||+....++..... ..+|+|+|.-. . ..+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 4568999999999999999999875 55 8999999999887654432 46899999532 1 1355667
Q ss_pred CcEEEE
Q 009048 327 VRLVCH 332 (545)
Q Consensus 327 v~~VI~ 332 (545)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888774
No 271
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=72.60 E-value=2.5 Score=33.65 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=32.2
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l 292 (545)
++.++++||.+-..+...+..|...|+++..+.||+
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 456899999998889999999999999999999986
No 272
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=72.59 E-value=8.9 Score=37.93 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=52.5
Q ss_pred CCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 78 ~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
.+.+||+++++.-+......|+..|+.+..+++..+...+..+......+. .+++++|.
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 301 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR--SKVLITTN 301 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CCEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 578999999999999999999999999999999999999999998888765 67777774
No 273
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=72.17 E-value=1.8 Score=41.97 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
..+++.+|+|+|||....
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999997654
No 274
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=71.94 E-value=2.4 Score=42.52 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=17.7
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 009048 50 VLSGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 50 il~g~d~lv~apTGsGKTl~~ 70 (545)
+..|..+++++|||+|||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 447889999999999999743
No 275
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=71.90 E-value=17 Score=34.85 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=20.1
Q ss_pred CEEEEcCCCchHHHHHHHHHhcCCCeEEEEcC
Q 009048 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P 86 (545)
-+++.||+|+|||.....-+-......++|+.
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 47889999999997544322222234566665
No 276
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=71.83 E-value=2.1 Score=38.73 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (545)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678899999999999754
No 277
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=71.16 E-value=2.7 Score=41.24 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+-+++.+|||+|||....
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 346789999999997543
No 278
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=71.04 E-value=3.1 Score=39.34 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=17.4
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (545)
.+..+++.+|+|+|||.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASR 48 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHH
Confidence 457899999999999976543
No 279
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=70.47 E-value=2.8 Score=41.07 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=13.5
Q ss_pred CEEEEcCCCchHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (545)
-+++.+|||+|||....
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36789999999997543
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=70.27 E-value=2.5 Score=38.08 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=17.4
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (545)
.++.+++.+|+|+|||.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 567889999999999976543
No 281
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=70.09 E-value=10 Score=37.94 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=52.7
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
..+.+||+++++.-+....+.|...|+.+..+++......+..+......+. .+++++|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 334 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA--SRVLISTD 334 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS--SCEEEECG
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 3568999999999999999999999999999999999999998888888775 67877774
No 282
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=69.92 E-value=39 Score=34.46 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=24.9
Q ss_pred CCEEEEcCCCchHHHHHH-HHHh--cCCCeEEEEc--ChHHHHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS--PLIALMENQVIG 97 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp~l--~~~~~~lVi~--P~~aL~~qq~~~ 97 (545)
+-+.+.+++|+|||.... +... ..++.++++. +.+..+.+|...
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~ 147 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL 147 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH
Confidence 346678999999996543 3222 2355666654 444444444433
No 283
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.82 E-value=2.9 Score=42.93 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=31.8
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 009048 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~fg~~~~r~~Q~~~i~~il--~g~d~lv~apTGsGKTl~~~l 72 (545)
+...|..++-.+...+.|++..-+.-.+| +.+..+- -.+-+++.||+|+|||+..-.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p---~~~~~~g~~~prGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQA---DLYEQIGIDPPRGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCH---HHHHHHCCCCCCEEEEESCTTTTHHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCceEEEECCCCCCHHHHHHH
Confidence 34566666666666666665322110011 1122211 235699999999999986543
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=69.66 E-value=2.1 Score=40.80 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=16.2
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 009048 51 LSGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~ 70 (545)
..|.-+++.+|||||||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 35667899999999999643
No 285
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=69.46 E-value=3.3 Score=33.26 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=31.6
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l 292 (545)
++.++++||.+-..+...+..|.+.|+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 456899999998888999999999999988888876
No 286
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=69.26 E-value=2.7 Score=38.27 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|+-+++.+|+|+|||....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 45667889999999997554
No 287
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=68.88 E-value=5.1 Score=36.74 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcC----CCEEEEcCCCchHHHHH
Q 009048 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~il~g----~d~lv~apTGsGKTl~~ 70 (545)
..+.+.|+ +-| -+|-.+ ...+..++++ +.+++.+|+|+|||..+
T Consensus 28 ~~I~~~l~-yq~-~~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLR-YQQ-IEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHH-HTT-CCHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHH-HcC-cCHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 44555554 223 234444 5566677665 24888999999999654
No 288
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.86 E-value=2.6 Score=41.69 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.5
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 009048 50 VLSGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 50 il~g~d~lv~apTGsGKTl~~ 70 (545)
+..|..+++.+|||||||...
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 346889999999999999743
No 289
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=68.83 E-value=3.3 Score=38.41 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|.-+.+.+|+|+|||....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHH
Confidence 56778899999999996543
No 290
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=68.53 E-value=3.5 Score=32.17 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=31.1
Q ss_pred ccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCC
Q 009048 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (545)
Q Consensus 259 ~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (545)
.++++||.+-..+...+..|.+.|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999988899999999999999888888874
No 291
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=68.49 E-value=3.4 Score=41.42 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=19.0
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
.++.+++|.++ |+-++||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 34556788764 67789999999864
No 292
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=68.16 E-value=2.7 Score=37.75 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|.-+.+.||+|+|||...-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 56677899999999997543
No 293
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=68.12 E-value=52 Score=34.33 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=24.1
Q ss_pred CEEEEcCCCchHHHHHH-HH-Hhc-CCCeEEEEcC--hHHHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ-IP-ALA-KPGIVLVVSP--LIALMENQVI 96 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp-~l~-~~~~~lVi~P--~~aL~~qq~~ 96 (545)
.+++++++|+|||.... +. .+. .+.+++++.. .+..+.+|..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~ 149 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLK 149 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHH
Confidence 36788999999996543 22 222 3556666663 3444444433
No 294
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=67.81 E-value=3.8 Score=40.44 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=19.2
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 009048 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il~g~d--~lv~apTGsGKTl~~ 70 (545)
.++.+++|.+ ++.-++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455678876 467889999999874
No 295
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=67.78 E-value=5.2 Score=41.90 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=50.1
Q ss_pred CccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc-----ccc-c-ccCC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-----~~G-i-D~p~ 326 (545)
+.++||.|+++.-+.+++..+.+. ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 667999999999888888877764 899999999986554432221 247899999532 112 2 4566
Q ss_pred CcEEEE
Q 009048 327 VRLVCH 332 (545)
Q Consensus 327 v~~VI~ 332 (545)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 296
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=67.32 E-value=4.8 Score=38.48 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHH-HHHHHHcCC-----CEEEEcCCCchHHHHHH
Q 009048 23 KEALVKLLRWHFGHAQFRDKQLD-AIQAVLSGR-----DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~~Q~~-~i~~il~g~-----d~lv~apTGsGKTl~~~ 71 (545)
...+.+.|+ +-|+ .+.+.. ++..+++++ .+++.+|+|+|||+.+.
T Consensus 72 ~n~i~~~l~-~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILE-LNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHH-HTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHH-HcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 345556664 3454 466644 467777664 47899999999998654
No 297
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=67.30 E-value=5 Score=40.46 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=26.1
Q ss_pred cCCCEEEEcCCCchHHHHHHHH---HhcCCCeEEEEcChHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp---~l~~~~~~lVi~P~~a 89 (545)
.+.++++.+|||+|||.....- ....+..++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 4678999999999999653321 2235667777777544
No 298
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=67.24 E-value=8.5 Score=42.88 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=48.0
Q ss_pred CccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc-----ccc-c-ccCC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-----~~G-i-D~p~ 326 (545)
+.++||.|+++.-+.+++..+.+. ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 668999999999999988888764 899999999987665432221 357899999531 112 2 4566
Q ss_pred CcEEEE
Q 009048 327 VRLVCH 332 (545)
Q Consensus 327 v~~VI~ 332 (545)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=67.13 E-value=3.1 Score=36.71 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (545)
++.+++.+|+|+|||.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46789999999999976543
No 300
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=67.04 E-value=5.1 Score=39.74 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+.+++.||+|+|||....
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999997654
No 301
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=66.63 E-value=16 Score=36.16 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=51.9
Q ss_pred CCccEEEEecchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc------ccccccCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~------~~GiD~p~ 326 (545)
.+.++||.|+++.-+.++++.+.+ .++.+..++|+.+..+....+. ..+|+|+|.-. ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 355899999999999999888765 3688999999998766554433 46799999521 12345567
Q ss_pred CcEEEE
Q 009048 327 VRLVCH 332 (545)
Q Consensus 327 v~~VI~ 332 (545)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 788774
No 302
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=66.59 E-value=8.2 Score=46.52 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=59.9
Q ss_pred HHHHHHc------CCCEEEEcCCCchHHHHHHH---HHhcCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHH
Q 009048 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (545)
Q Consensus 46 ~i~~il~------g~d~lv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~ 116 (545)
.++.++. |+-+.+.+|.|||||...+- .+...++.+++|.+-.+|-... ++++|+...-
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~~--------- 1485 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDN--------- 1485 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGGG---------
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHHH---------
Confidence 4566664 36689999999999976432 2344688999999877774332 6666765422
Q ss_pred HHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009048 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (545)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (545)
+++.-|+.- ...+.....+...+.+++||||.+-.+..
T Consensus 1486 ----------------l~~~~p~~~--e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1486 ----------------LLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ----------------CEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ----------------eEEeCCCcH--HHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 333333321 11222233444445689999998877754
No 303
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=66.15 E-value=30 Score=36.29 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=22.9
Q ss_pred cCCCEEEEcCCCchHHHHHH-HHHh--cCCCeEEEEcCh
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVSPL 87 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~-lp~l--~~~~~~lVi~P~ 87 (545)
.|.-+++.+|+|+|||.... +... ..+..++++++-
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 45678899999999995433 2222 234556777653
No 304
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=66.07 E-value=97 Score=29.82 Aligned_cols=178 Identities=16% Similarity=0.128 Sum_probs=87.3
Q ss_pred HHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc---
Q 009048 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC--- 169 (545)
Q Consensus 93 qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~--- 169 (545)
-..+.+++.|.....................+......++-+++.|..-.....+..+ ....+.+|++|-.-.
T Consensus 25 g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~----~~~giPvV~~~~~~~~~~ 100 (350)
T 3h75_A 25 FMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLS----QGSGIKLFIVNSPLTLDQ 100 (350)
T ss_dssp HHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHH----TTSCCEEEEEESCCCTTT
T ss_pred HHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHH----HhCCCcEEEEcCCCChHH
Confidence 3344456678887776665555444444444443211245455445322222222222 223477788875321
Q ss_pred --------------ccccCCCC-HHHHHHHHHHHHhC-----CC-cCEEEEEcCCChhhHH----HHHHHhcCCCCeEEe
Q 009048 170 --------------ISSWGHDF-RPSYRKLSSLRNYL-----PD-VPILALTATAAPKVQK----DVMESLCLQNPLVLK 224 (545)
Q Consensus 170 --------------i~~~g~~f-r~~~~~l~~l~~~~-----~~-~~~l~lTAT~~~~~~~----~i~~~l~~~~~~~~~ 224 (545)
+...+.|. ...+.....+.... .. ..++++++........ -+...+.-....
T Consensus 101 ~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~--- 177 (350)
T 3h75_A 101 RELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQV--- 177 (350)
T ss_dssp C------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTTE---
T ss_pred HhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCe---
Confidence 11112232 22333344455544 13 5778888775433221 111112111111
Q ss_pred ccCCCCcceeeeecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCc
Q 009048 225 SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (545)
Q Consensus 225 ~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~ 284 (545)
.....+......+.....+.+++...+ ....|||.+-..+..+...|++.|+.
T Consensus 178 ------~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 178 ------HLRQLVYGEWNRERAYRQAQQLLKRYP-KTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp ------EEEEEEECTTCHHHHHHHHHHHHHHCT-TEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred ------EEEEEeeCCCcHHHHHHHHHHHHHhCC-CcCEEEECChHHHHHHHHHHHHcCCC
Confidence 011111111223455666777777764 46788999989999999999998864
No 305
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=65.73 E-value=4 Score=40.63 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=18.4
Q ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 47 IQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 47 i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
++.+++|.++ |+-++||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4556678764 67889999999874
No 306
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=65.67 E-value=4.4 Score=40.41 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=18.4
Q ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 47 IQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 47 i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
++.+++|.++ |.-++||||||...
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4556788764 67889999999864
No 307
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=65.65 E-value=4.4 Score=40.68 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=18.9
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 009048 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il~g~d--~lv~apTGsGKTl~~ 70 (545)
.++.++.|.+ +|.-++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3455668876 467889999999874
No 308
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=65.63 E-value=5.9 Score=34.35 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (545)
+..+++.+|.|||||...-+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46789999999999976544
No 309
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=65.61 E-value=5.3 Score=34.84 Aligned_cols=20 Identities=20% Similarity=0.003 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (545)
++-+++.++.|||||.+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45578999999999986543
No 310
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=65.25 E-value=5 Score=33.26 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=31.4
Q ss_pred ccEEEEe-cchhhHHHHHHHHHhCCCcEEEecCCCCH
Q 009048 259 TCAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLND 294 (545)
Q Consensus 259 ~~~IIf~-~t~~~~~~l~~~L~~~g~~~~~~h~~l~~ 294 (545)
.++|||| .+-..+...+..|...|+++..|.||+..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 57777889999999999999999999754
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=65.25 E-value=3.4 Score=39.00 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=12.8
Q ss_pred EEEEcCCCchHHHHH
Q 009048 56 CFCLMPTGGGKSMCY 70 (545)
Q Consensus 56 ~lv~apTGsGKTl~~ 70 (545)
+++.+|||||||...
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 678999999999754
No 312
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=65.22 E-value=4.1 Score=37.44 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=16.5
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 009048 51 LSGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~ 70 (545)
..|+-+.+++|+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46788999999999999654
No 313
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=65.19 E-value=4.3 Score=40.85 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=18.8
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
.++.+++|.++ |+-++||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34556788764 67789999999864
No 314
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=65.15 E-value=4.1 Score=40.14 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.0
Q ss_pred CEEEEcCCCchHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (545)
-+++.+|||+|||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997543
No 315
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=65.07 E-value=4.6 Score=40.20 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=18.4
Q ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 47 IQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 47 i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
++.+++|.++ |.-++||||||...
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 4556688764 67789999999874
No 316
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=64.96 E-value=3.4 Score=37.13 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=16.8
Q ss_pred HcCCCEEEEcCCCchHHHHHH
Q 009048 51 LSGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~~ 71 (545)
..|.-+.+.||+|||||...-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 356778899999999997543
No 317
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=64.92 E-value=3 Score=36.10 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=14.2
Q ss_pred CEEEEcCCCchHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (545)
-+++.||+|||||.....
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999976543
No 318
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=64.88 E-value=4.3 Score=40.56 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=18.3
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 009048 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (545)
Q Consensus 47 i~~il~g~d--~lv~apTGsGKTl~~ 70 (545)
++.++.|.+ +|..++||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 345668876 467889999999864
No 319
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=64.83 E-value=2.6 Score=38.52 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCchHHHH
Q 009048 53 GRDCFCLMPTGGGKSMC 69 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (545)
|+-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45688999999999854
No 320
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=64.82 E-value=4.4 Score=40.45 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=19.4
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
.++.+++|.++ |.-++||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 45667788875 67789999999874
No 321
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=64.73 E-value=4.4 Score=40.48 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=19.0
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
.++.+++|.++ |.-++||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 34556688764 67789999999874
No 322
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=64.68 E-value=4.7 Score=39.82 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=20.5
Q ss_pred HHHHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 45 DAIQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 45 ~~i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
..++.+++|.++ |.-++||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 356777889874 67889999999864
No 323
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=64.44 E-value=15 Score=37.36 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=51.7
Q ss_pred CCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 78 ~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
...+||+++++.-+....+.|...|+.+..+++......+.........+. .+++++|.
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT~ 358 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGS--MKVLIATS 358 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSS--CSEEEECG
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCC--CcEEEEch
Confidence 344999999999999999999999999999999999999999998888765 67877775
No 324
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=64.40 E-value=23 Score=38.43 Aligned_cols=82 Identities=23% Similarity=0.207 Sum_probs=63.1
Q ss_pred cCCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhc
Q 009048 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (545)
Q Consensus 76 ~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~ 155 (545)
..+.++||+++++.-+....+.|...|+.+..+++......+..+......+. ++++++|.- ...|+ .
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~--~~VLvaT~~--l~~Gl--------D 504 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH--YDCLVGINL--LREGL--------D 504 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS--CSEEEESCC--CCTTC--------C
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCC--ceEEEccCh--hhcCc--------c
Confidence 35789999999999999999999999999999999999999988888887764 778887732 22221 2
Q ss_pred cCCccEEEEecccc
Q 009048 156 RGLLNLVAIDEAHC 169 (545)
Q Consensus 156 ~~~l~~iViDEaH~ 169 (545)
...++++|+=+++.
T Consensus 505 ip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 505 IPEVSLVAILDADK 518 (664)
T ss_dssp CTTEEEEEETTTTS
T ss_pred CCCCCEEEEeCCcc
Confidence 23367777766654
No 325
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=64.37 E-value=4 Score=37.08 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|+-+++++|+|+|||....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 56778899999999997543
No 326
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=64.27 E-value=4.5 Score=41.23 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=19.0
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 009048 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il~g~d--~lv~apTGsGKTl~~ 70 (545)
.++.++.|.+ +|+-++||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 3455678876 467789999999874
No 327
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=64.15 E-value=4.3 Score=36.07 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+-+.+.+|+|+|||...-
T Consensus 2 ~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457889999999997543
No 328
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=64.12 E-value=91 Score=28.84 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHhCCC--ccEEEEecchhhHHHHHHHHHhCCC
Q 009048 243 DDAYADLCSVLKANGD--TCAIVYCLERTTCDELSAYLSAGGI 283 (545)
Q Consensus 243 ~~~~~~l~~~l~~~~~--~~~IIf~~t~~~~~~l~~~L~~~g~ 283 (545)
+.....+.+++...+. .+..|||.+...+..+...|++.|+
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 215 (291)
T 3l49_A 173 QSAYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGR 215 (291)
T ss_dssp HHHHHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCcCCcCEEEECCCchHHHHHHHHHHcCC
Confidence 4456667777777651 4678899999999999999999887
No 329
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=64.11 E-value=5 Score=32.09 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCc-EEEecCCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (545)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3567999999988899999999999995 888889863
No 330
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=64.09 E-value=4.8 Score=40.38 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=18.9
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
.++.+++|.++ |..++||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34556788764 67789999999764
No 331
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=63.97 E-value=4.9 Score=40.04 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=19.0
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
.++.+++|.++ |.-++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34556788764 67789999999864
No 332
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=63.80 E-value=4.7 Score=35.43 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.++.+++.+++|+|||....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45789999999999997654
No 333
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=63.79 E-value=6.6 Score=38.04 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=46.8
Q ss_pred CccEEEEecchhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc------c-cccccC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------G-MGIDRK 325 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~------~-~GiD~p 325 (545)
...+||.++|+.-+.+++..+... ++.+..++|+.....+ .....+|||+|.-- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 346999999999999988887753 4667777776543221 14567899999632 1 245667
Q ss_pred CCcEEEE
Q 009048 326 DVRLVCH 332 (545)
Q Consensus 326 ~v~~VI~ 332 (545)
+++++|.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 7777774
No 334
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=63.74 E-value=4.7 Score=40.31 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=18.9
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
+++.+++|.++ |.-++||||||...
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 44556788775 66789999999874
No 335
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.71 E-value=5.3 Score=40.68 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=20.4
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHHH
Q 009048 46 AIQAVLSGRDC--FCLMPTGGGKSMCYQ 71 (545)
Q Consensus 46 ~i~~il~g~d~--lv~apTGsGKTl~~~ 71 (545)
.++.++.|.++ |..++||||||....
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 56677889875 677899999998753
No 336
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=63.60 E-value=9 Score=48.44 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcCCCCCCHHH-HHHH---HHHHcCCCEEEEcCCCchHHHHHHHHH
Q 009048 23 KEALVKLLRWHFGHAQFRDKQ-LDAI---QAVLSGRDCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~~Q-~~~i---~~il~g~d~lv~apTGsGKTl~~~lp~ 74 (545)
.+.+.+.+.+ .|+. +.+.+ .+++ +.+...+.++++||||+|||.++.+-+
T Consensus 891 ~~~i~~~~~~-~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 891 VQCLKDAGQR-SGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHHHHHHHHH-HTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHH
Confidence 3444555554 4665 45544 2333 334456789999999999999886543
No 337
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=63.56 E-value=3.3 Score=36.77 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|.-+++.+|.|+|||...-
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 56678899999999997544
No 338
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=66.99 E-value=1.5 Score=38.54 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=47.3
Q ss_pred CCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEEC
Q 009048 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (545)
Q Consensus 78 ~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~t 137 (545)
.+.+||+++++.-+......|+..|+.+..+++..+...+.........+. .+++++|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR--VNVLVAT 87 (170)
Confidence 467899999999999989999999999999999888888877777766554 5666666
No 339
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=63.02 E-value=2.7 Score=39.13 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=45.8
Q ss_pred CccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc-----ccc---ccccC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM---GIDRK 325 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-----~~~---GiD~p 325 (545)
+.++||.++|+.-+.++++.+.+. ++.+..++++.....+ ......+..+|+|+|.- +.. ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 446999999999999999988764 6677777765322211 11222466789999942 111 35556
Q ss_pred CCcEEEE
Q 009048 326 DVRLVCH 332 (545)
Q Consensus 326 ~v~~VI~ 332 (545)
++++||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 6666653
No 340
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=62.97 E-value=7.6 Score=40.01 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (545)
.+++++.+|+|+|||.....
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 36899999999999976543
No 341
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=62.79 E-value=6.3 Score=38.20 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
..+++.||+|+|||....
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 689999999999997654
No 342
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=62.56 E-value=4.6 Score=40.42 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=18.9
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 009048 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il~g~d--~lv~apTGsGKTl~~ 70 (545)
.++.++.|.+ +|+-++||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455678876 467789999999864
No 343
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=62.54 E-value=4.4 Score=36.74 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=17.0
Q ss_pred HHHcCCCEEEEcCCCchHHHHHH
Q 009048 49 AVLSGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 49 ~il~g~d~lv~apTGsGKTl~~~ 71 (545)
.+..|+-+.+.+|+|+|||...-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 56678888999999999997543
No 344
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=62.46 E-value=1e+02 Score=28.78 Aligned_cols=179 Identities=10% Similarity=0.051 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 009048 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (545)
Q Consensus 89 aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (545)
.++....+.+.+.|.......... ..........+.... ++-++..|..... ..+..+.. ..+-+|++|...
T Consensus 27 ~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~--vdGiIi~~~~~~~-~~~~~l~~----~~iPvV~~~~~~ 98 (294)
T 3qk7_A 27 EMISWIGIELGKRGLDLLLIPDEP-GEKYQSLIHLVETRR--VDALIVAHTQPED-FRLQYLQK----QNFPFLALGRSH 98 (294)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECT-TCCCHHHHHHHHHTC--CSEEEECSCCSSC-HHHHHHHH----TTCCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC-hhhHHHHHHHHHcCC--CCEEEEeCCCCCh-HHHHHHHh----CCCCEEEECCCC
Confidence 344445555667787776655432 111122233333332 4445554433222 22333322 236778887631
Q ss_pred c---ccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHH----HHHHHhcCCCCeEEeccCCCCcceeeeecccc
Q 009048 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK----DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL 241 (545)
Q Consensus 169 ~---i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~----~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~ 241 (545)
. +..-+.|....-....+.+.......+.+++......... -+...+.-... ... +... ......
T Consensus 99 ~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-----~~~-~~~~--~~~~~~ 170 (294)
T 3qk7_A 99 LPKPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGL-----MPL-AGYL--QKADPT 170 (294)
T ss_dssp CSSCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTC-----CCC-TTCE--EEECSS
T ss_pred CCCCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCC-----CCC-hhHe--ecCCCC
Confidence 1 1111223333333333333334667788887765432211 11111211110 000 0011 111112
Q ss_pred hhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCc
Q 009048 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (545)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~ 284 (545)
.+.-+..+.+++... ..+.-|||.+...+..+...|++.|+.
T Consensus 171 ~~~~~~~~~~~l~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 171 RPGGYLAASRLLALE-VPPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp HHHHHHHHHHHHHSS-SCCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCC-CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 234556677777654 346788999888888888888887653
No 345
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=62.44 E-value=4.9 Score=40.59 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=19.1
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 009048 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il~g~d--~lv~apTGsGKTl~~ 70 (545)
.++.+++|.+ +|+-++||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3455678876 467889999999874
No 346
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=62.27 E-value=5.1 Score=36.16 Aligned_cols=21 Identities=19% Similarity=0.119 Sum_probs=17.1
Q ss_pred HcCCCEEEEcCCCchHHHHHH
Q 009048 51 LSGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~~ 71 (545)
..|+-+++++|+|+|||....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 467788999999999997543
No 347
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=62.21 E-value=7.9 Score=33.02 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCC-cEEEecCCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 293 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~-~~~~~h~~l~ 293 (545)
++.++||||.+-..+...+..|...|+ ++..|.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999998888899999999999 5899999984
No 348
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=62.19 E-value=31 Score=27.50 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=42.4
Q ss_pred EEEEecchhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 009048 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (545)
Q Consensus 261 ~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (545)
.+||.+..+-...+...++..|..+..++++...+.|.+-++.|....++|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 466777777788888899999999999999999999999999998654443
No 349
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=62.15 E-value=5 Score=40.38 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=18.3
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 009048 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (545)
Q Consensus 47 i~~il~g~d--~lv~apTGsGKTl~~ 70 (545)
++.+++|.+ +|.-++||||||...
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 445667876 467889999999864
No 350
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=62.06 E-value=5 Score=39.81 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=13.4
Q ss_pred CEEEEcCCCchHHHHH
Q 009048 55 DCFCLMPTGGGKSMCY 70 (545)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (545)
-+++.||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4678999999999754
No 351
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=61.53 E-value=3.4 Score=40.23 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=17.2
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (545)
.+..+++.+|||+|||.....
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHH
Confidence 356899999999999986543
No 352
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=61.48 E-value=5.7 Score=40.52 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 45 DAIQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 45 ~~i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
..++.++.|.++ |..++||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 356778899875 67789999999874
No 353
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=61.47 E-value=3.1 Score=39.37 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
.+.+++.||+|+|||....
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997653
No 354
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=61.25 E-value=8 Score=44.64 Aligned_cols=74 Identities=8% Similarity=0.123 Sum_probs=55.9
Q ss_pred CCccEEEEecchhhHHHHHHHHHhC----CC----cEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc-cccccc-cCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAG----GI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGID-RKD 326 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~----g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GiD-~p~ 326 (545)
.+.++||.++|+.-+.++++.+.+. ++ .+..+||+.+...+....+.+.+ .+|+|+|.- +-.-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3457999999999999998888753 56 78999999999887777776666 899999962 211121 457
Q ss_pred CcEEEE
Q 009048 327 VRLVCH 332 (545)
Q Consensus 327 v~~VI~ 332 (545)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 355
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=61.07 E-value=13 Score=28.01 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=29.9
Q ss_pred CCCccEEEEecchhhHHHHHHHHHhCCCc-EEEecCCCC
Q 009048 256 NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (545)
Q Consensus 256 ~~~~~~IIf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (545)
.++.++++||.+-..+...+..|.+.|+. +..+ ||+.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 34678999999988899999999999985 5555 7754
No 356
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=60.93 E-value=5.7 Score=33.91 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=31.9
Q ss_pred CCccEEEEecch--hhHHHHHHHHHhCCCcEEEecCCCC
Q 009048 257 GDTCAIVYCLER--TTCDELSAYLSAGGISCAAYHAGLN 293 (545)
Q Consensus 257 ~~~~~IIf~~t~--~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (545)
.+.++||||.+- ..+...+..|...|+++..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 356799999987 5788999999999999999999873
No 357
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=60.91 E-value=4.1 Score=33.69 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.6
Q ss_pred CCccEEEEecchhh--HHHHHHHHHhCCCcEEEecCCCC
Q 009048 257 GDTCAIVYCLERTT--CDELSAYLSAGGISCAAYHAGLN 293 (545)
Q Consensus 257 ~~~~~IIf~~t~~~--~~~l~~~L~~~g~~~~~~h~~l~ 293 (545)
++.+++|||.+-.. +...+..|.+.|+.+..+.||+.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 35679999998776 88999999999999888999863
No 358
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=60.80 E-value=4.9 Score=35.61 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=16.9
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (545)
.+..+++.+++|||||.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 356789999999999986543
No 359
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=60.59 E-value=30 Score=36.36 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=52.1
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHc---CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
....+||+++++.-+......|+.. ++.+..+++......+..+......+. .+++++|.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~vLvaT~ 400 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTD 400 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECG
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC--CCEEEEcc
Confidence 4678999999999999888888886 899999999999999999998888775 67877774
No 360
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=60.57 E-value=3.4 Score=36.29 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (545)
.|.-+.+++|.|||||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 355678999999999975543
No 361
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=60.42 E-value=3.9 Score=41.19 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMC 69 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~ 69 (545)
.|.-+++++|||||||..
T Consensus 135 ~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSEEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566789999999999964
No 362
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=60.30 E-value=19 Score=38.19 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=51.9
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHc---CCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
....+||+++++.-+......|+.. ++.+..+++..+...+..+......+. .+++++|.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~--~~vLVaT~ 349 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTD 349 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECG
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC--CeEEEEcc
Confidence 3678999999999999999999886 899999999999999999988888765 67877774
No 363
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.17 E-value=5.2 Score=36.43 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=39.7
Q ss_pred CccEEEEecchhhHHHHHHHHHhC--------CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecc
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (545)
+.++||.++|+.-+.++++.+.+. ++.+..++|+.+...... ...+..+|+|+|.
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Iiv~Tp 134 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE----KLNVQPHIVIGTP 134 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC----CCSSCCSEEEECH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH----HcCCCCCEEEeCH
Confidence 457999999999999998887653 577888999875443211 1124578999995
No 364
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=60.11 E-value=7.6 Score=34.33 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=14.3
Q ss_pred CEEEEcCCCchHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (545)
-+++.+|.|+|||...-.
T Consensus 4 ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467899999999976544
No 365
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=59.95 E-value=6.2 Score=40.65 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=18.3
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 009048 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (545)
Q Consensus 47 i~~il~g~d--~lv~apTGsGKTl~~ 70 (545)
++.++.|.+ +|.-+.||||||...
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 445568876 467889999999874
No 366
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=59.76 E-value=8.7 Score=34.44 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (545)
+-++++||.|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999753
No 367
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=59.73 E-value=5.1 Score=34.60 Aligned_cols=17 Identities=18% Similarity=-0.214 Sum_probs=13.9
Q ss_pred CEEEEcCCCchHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (545)
-+++.||.|+|||....
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997654
No 368
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=59.65 E-value=6.3 Score=37.19 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.4
Q ss_pred cCCCEEEEcCCCchHHHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQIP 73 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp 73 (545)
.|+.+++.++.|+|||....+-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4899999999999999865543
No 369
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=59.62 E-value=9.2 Score=30.70 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=32.3
Q ss_pred CCCccEEEEecchhhHHHHHHHHHhCCCcEEEecCCCC
Q 009048 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (545)
Q Consensus 256 ~~~~~~IIf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (545)
.++.+++|||.+-..+...+..|...|+....+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 34668999999988899999999999986678889874
No 370
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=59.62 E-value=5.3 Score=40.12 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=19.7
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 46 ~i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
.++.++.|.++ |..++||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 46677888864 66789999999874
No 371
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=59.49 E-value=4.7 Score=40.28 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCchHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMC 69 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~ 69 (545)
.+.-+++.+|||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 345688999999999964
No 372
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=59.33 E-value=6.2 Score=33.30 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=31.9
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCC-cEEEecCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGL 292 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~-~~~~~h~~l 292 (545)
++.++||||.+-..+...+..|.+.|+ ++..+.||+
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 456899999998889999999999999 588999997
No 373
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=59.16 E-value=6.2 Score=39.48 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=17.3
Q ss_pred HHH-cCCC--EEEEcCCCchHHHHHH
Q 009048 49 AVL-SGRD--CFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 49 ~il-~g~d--~lv~apTGsGKTl~~~ 71 (545)
.++ .|.+ +|.-++||||||....
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred hhccCCceeEEEeeCCCCCCCCEEEe
Confidence 344 4776 4889999999998753
No 374
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=59.02 E-value=5.6 Score=35.76 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|.-+++.+|.|+|||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678899999999997544
No 375
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=58.97 E-value=5.1 Score=39.93 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=19.5
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHHH
Q 009048 46 AIQAVLSGRDC--FCLMPTGGGKSMCYQ 71 (545)
Q Consensus 46 ~i~~il~g~d~--lv~apTGsGKTl~~~ 71 (545)
.++.+++|.++ |+-++||||||....
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 45556688764 677899999998753
No 376
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=58.96 E-value=5.5 Score=34.67 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=13.7
Q ss_pred CEEEEcCCCchHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (545)
-+++.|++|||||....
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 36789999999997543
No 377
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=58.86 E-value=5.1 Score=39.88 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=18.4
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHHH
Q 009048 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 47 i~~il~g~d--~lv~apTGsGKTl~~~ 71 (545)
++.+++|.+ +|.-++||||||....
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEecc
Confidence 344567876 4678899999998753
No 378
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=58.62 E-value=5.6 Score=35.02 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
+.-+++.++.|||||....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999997543
No 379
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=58.17 E-value=33 Score=38.12 Aligned_cols=56 Identities=9% Similarity=0.038 Sum_probs=44.1
Q ss_pred CCCccEEEEecchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc
Q 009048 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (545)
Q Consensus 256 ~~~~~~IIf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (545)
..+..++|.++|+.-|.+.++.+.. .|+++..+.||++.+.|.... .++|+|+|+.
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 3455799999999988888777654 589999999999987665433 3789999973
No 380
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=58.07 E-value=4.2 Score=35.82 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (545)
.|..+++.++.|||||.....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345678999999999976543
No 381
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=57.92 E-value=11 Score=37.61 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=46.7
Q ss_pred CCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECc
Q 009048 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (545)
Q Consensus 78 ~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (545)
.+.+||+++++.-+....+.|...++.+..+++......+..+......+. .+++++|.
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 338 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS--SRVLITTD 338 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC--CcEEEECC
Confidence 468999999999999999999999999999999999999988888887664 67777774
No 382
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=57.88 E-value=5.8 Score=31.71 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=31.9
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCc-EEEecCCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (545)
++.+++|||.+-..+...+..|.+.|+. +..+.||+.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4568999999988899999999999985 888999874
No 383
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=57.57 E-value=5.5 Score=40.22 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=22.3
Q ss_pred HHHHHHHH--------HHHcCCC--EEEEcCCCchHHHHH
Q 009048 41 DKQLDAIQ--------AVLSGRD--CFCLMPTGGGKSMCY 70 (545)
Q Consensus 41 ~~Q~~~i~--------~il~g~d--~lv~apTGsGKTl~~ 70 (545)
.-|.++++ .+++|.+ +|.-++||||||...
T Consensus 77 ~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 77 STQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp CCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 45777665 4567876 467889999999864
No 384
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=57.56 E-value=6.1 Score=36.45 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=16.6
Q ss_pred HHcCCCEEEEcCCCchHHHHHH
Q 009048 50 VLSGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 50 il~g~d~lv~apTGsGKTl~~~ 71 (545)
+-.|+-+.+.+|.|+|||...-
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 3467778899999999997543
No 385
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=57.55 E-value=68 Score=30.77 Aligned_cols=41 Identities=17% Similarity=0.029 Sum_probs=23.4
Q ss_pred CEEEEcCCCchHHHHHH-HHHh--cCCCeEEEEc--ChHHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS--PLIALMENQV 95 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~l--~~~~~~lVi~--P~~aL~~qq~ 95 (545)
-+.+.+++|+|||.... +... ..+++++++. |.+..+.+|.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql 145 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQL 145 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHH
Confidence 46678999999996433 3222 2455666554 3344444443
No 386
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=57.53 E-value=1.2e+02 Score=28.07 Aligned_cols=177 Identities=10% Similarity=0.034 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 009048 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (545)
Q Consensus 89 aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (545)
.++....+.+.+.|.....................+.... ++-++..|... .......+ ....+-+|++|...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~-~~~~~~~~----~~~~iPvV~~~~~~ 97 (291)
T 3egc_A 25 EVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERR--VDGLILAPSEG-EHDYLRTE----LPKTFPIVAVNREL 97 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCSS-CCHHHHHS----SCTTSCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCC--CCEEEEeCCCC-ChHHHHHh----hccCCCEEEEeccc
Confidence 3444555556678888777666555554444555554443 45555544333 22222222 22346778887543
Q ss_pred c---ccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHH-------HHHHHhcCCCCeEEeccCCCCcceeeeec
Q 009048 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK-------DVMESLCLQNPLVLKSSFNRPNLFYEVRY 238 (545)
Q Consensus 169 ~---i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~-------~i~~~l~~~~~~~~~~~~~r~ni~~~v~~ 238 (545)
. +..-+.|....-..+.+.+.......+.+++......... +.....++.... .... ..
T Consensus 98 ~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~---------~~~~--~~ 166 (291)
T 3egc_A 98 RIPGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQ---------EWIA--AG 166 (291)
T ss_dssp CCTTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCG---------GGEE--C-
T ss_pred CCCCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCH---------HHeE--eC
Confidence 2 1112233333334444444444677788887765432211 112222221100 0000 00
Q ss_pred ccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCc
Q 009048 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (545)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~ 284 (545)
....+.....+.+++... ..+.-|||.+...+..+...|.+.|+.
T Consensus 167 ~~~~~~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 167 GVRADNGRDGAIKVLTGA-DRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp -----CCHHHHHHHHTC--CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred CCChhHHHHHHHHHHhCC-CCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 011122344556666544 346788898888888888888876653
No 387
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=57.51 E-value=6.2 Score=32.82 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=32.1
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCc-EEEecCCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (545)
++.++||||.+-..+...+..|.+.|+. +..|.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988899999999999985 888999974
No 388
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=57.44 E-value=8.8 Score=36.46 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+.+++.+|+|+|||....
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 348999999999997554
No 389
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=57.44 E-value=5 Score=34.48 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=12.8
Q ss_pred CEEEEcCCCchHHHH
Q 009048 55 DCFCLMPTGGGKSMC 69 (545)
Q Consensus 55 d~lv~apTGsGKTl~ 69 (545)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 358899999999975
No 390
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=57.41 E-value=28 Score=38.65 Aligned_cols=72 Identities=7% Similarity=0.094 Sum_probs=52.9
Q ss_pred hCCCccEEEEecchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc-cc----------
Q 009048 255 ANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG---------- 319 (545)
Q Consensus 255 ~~~~~~~IIf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~---------- 319 (545)
...+..++|.++|+.-|.+.++.+.. .|+++..+.||++.+.|.... ..+|+++|+- +|
T Consensus 121 aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~ 194 (844)
T 1tf5_A 121 ALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVL 194 (844)
T ss_dssp HTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhc
Confidence 33456799999999999888877654 589999999999988766542 3789999962 21
Q ss_pred --cccccCCCcEEEE
Q 009048 320 --MGIDRKDVRLVCH 332 (545)
Q Consensus 320 --~GiD~p~v~~VI~ 332 (545)
..++...+.++|.
T Consensus 195 ~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 195 YKEQMVQRPLHFAVI 209 (844)
T ss_dssp SGGGCCCCCCCEEEE
T ss_pred chhhhcccCCCEEEE
Confidence 1255567777763
No 391
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=57.20 E-value=5.5 Score=41.21 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
+.+++.+|+|+|||....
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999997654
No 392
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=56.94 E-value=5.2 Score=40.69 Aligned_cols=15 Identities=33% Similarity=0.151 Sum_probs=12.6
Q ss_pred EEEEcCCCchHHHHH
Q 009048 56 CFCLMPTGGGKSMCY 70 (545)
Q Consensus 56 ~lv~apTGsGKTl~~ 70 (545)
+++.||||+|||...
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 578899999999654
No 393
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=56.89 E-value=5.3 Score=34.86 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
|.-+++.+|.|+|||...-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4567899999999997654
No 394
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.81 E-value=13 Score=47.78 Aligned_cols=61 Identities=15% Similarity=0.306 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCCCCCHHHH-HHHH---HHHcCCCEEEEcCCCchHHHHHHHH--HhcC----CCeEEEEcC
Q 009048 24 EALVKLLRWHFGHAQFRDKQL-DAIQ---AVLSGRDCFCLMPTGGGKSMCYQIP--ALAK----PGIVLVVSP 86 (545)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~-~~i~---~il~g~d~lv~apTGsGKTl~~~lp--~l~~----~~~~lVi~P 86 (545)
+.+.+.+++ .|+. +.+.+. ++++ .+...+-++++||||+|||.|+.+- ++.+ ...+.++-|
T Consensus 875 ~ai~~~~~~-~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNP 945 (3245)
T 3vkg_A 875 KKIQEIAKQ-RHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDP 945 (3245)
T ss_dssp HHHHHHHHH-TTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECT
T ss_pred HHHHHHHHH-cCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECC
Confidence 344444444 4665 455443 3433 2334567899999999999998643 3332 123455666
No 395
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=56.77 E-value=14 Score=36.22 Aligned_cols=15 Identities=20% Similarity=-0.119 Sum_probs=12.5
Q ss_pred EEEEcCCCchHHHHH
Q 009048 56 CFCLMPTGGGKSMCY 70 (545)
Q Consensus 56 ~lv~apTGsGKTl~~ 70 (545)
+.+.||+|||||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568899999999654
No 396
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=56.55 E-value=1.4e+02 Score=28.48 Aligned_cols=178 Identities=10% Similarity=0.002 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 009048 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (545)
Q Consensus 89 aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (545)
.++....+.+.+.|.....................+.... ++-++..|...........+ ....+-+|++|-..
T Consensus 80 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~----~~~~iPvV~~~~~~ 153 (338)
T 3dbi_A 80 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLR--CDAIMIYPRFLSVDEIDDII----DAHSQPIMVLNRRL 153 (338)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTT--CSEEEECCSSSCHHHHHHHH----HHCSSCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEeCCCCChHHHHHHH----HcCCCCEEEEcCCC
Confidence 4445555566778887776665555444444444444433 45555555322222122222 22235577777421
Q ss_pred c---ccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHH-------HHHHHhcCCCCeEEeccCCCCcceeeeec
Q 009048 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK-------DVMESLCLQNPLVLKSSFNRPNLFYEVRY 238 (545)
Q Consensus 169 ~---i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~-------~i~~~l~~~~~~~~~~~~~r~ni~~~v~~ 238 (545)
. +..-+.|....-....+.+.......+.++++........ +.....++... +.. ....
T Consensus 154 ~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~---------~~~--~~~~ 222 (338)
T 3dbi_A 154 RKNSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALN---------EKL--IANG 222 (338)
T ss_dssp SSSGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCC---------GGG--EECC
T ss_pred CCCCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCC---------cce--EEeC
Confidence 1 1112233333333333333334667788887764432211 11222222110 000 0011
Q ss_pred ccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCc
Q 009048 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (545)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~ 284 (545)
....+.-...+.+++... ..+.-|||.+...+..+...|++.|+.
T Consensus 223 ~~~~~~~~~~~~~ll~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 223 KWTPASGAEGVEMLLERG-AKFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp CSSHHHHHHHHHHHHHTT-CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHcCC-CCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 112234455666666654 346788998888888888888887653
No 397
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=56.14 E-value=7.5 Score=32.65 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=32.0
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCc-EEEecCCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (545)
++.+++|||.+-..+...+..|.+.|+. +..|.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988899999999999995 888999863
No 398
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=55.91 E-value=6.5 Score=38.69 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.9
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
..+++.+|+|+|||....+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 6799999999999976543
No 399
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=55.42 E-value=8.9 Score=34.22 Aligned_cols=32 Identities=16% Similarity=-0.020 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCeEEEEcChH
Q 009048 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~ 88 (545)
++|.+++|||||.-..--+.. +..++++..-.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 589999999999644332333 55667766543
No 400
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=54.94 E-value=6.8 Score=32.86 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=32.0
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCc-EEEecCCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (545)
.+.+++|||.+-..+..++..|...|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4568999999988888999999999995 999999873
No 401
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=54.92 E-value=28 Score=39.61 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=53.5
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHH-cCCceeEecccccHHHHHHHHHhhhcCCCCccEEEEC
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~t 137 (545)
.++++||+++++.-+......|+. .|+.+..+++..+...+..+......+...++++++|
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 578899999999999988888984 6999999999999999999998888876568888887
No 402
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=54.71 E-value=5.3 Score=40.03 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.5
Q ss_pred CEEEEcCCCchHHHHH
Q 009048 55 DCFCLMPTGGGKSMCY 70 (545)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (545)
-+++.+|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999754
No 403
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=54.58 E-value=5 Score=37.01 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=11.7
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (545)
.|.-+.+.+|+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667889999999999654
No 404
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=54.43 E-value=6.2 Score=35.46 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|.-+.+.+|.|+|||....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45677889999999997543
No 405
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=54.43 E-value=6.7 Score=39.46 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=17.8
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 009048 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (545)
Q Consensus 47 i~~il~g~d--~lv~apTGsGKTl~~ 70 (545)
++.+++|.+ +|+-++||||||...
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 344557876 467789999999864
No 406
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=54.01 E-value=11 Score=40.53 Aligned_cols=25 Identities=32% Similarity=0.285 Sum_probs=20.1
Q ss_pred HHHHcCCCEEEEcCCCchHHHHHHH
Q 009048 48 QAVLSGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 48 ~~il~g~d~lv~apTGsGKTl~~~l 72 (545)
..+..|+.+++.+|+|+|||..+..
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHHH
Confidence 3455788999999999999976543
No 407
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=53.24 E-value=7.4 Score=34.86 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
.-+++.|+.|+|||....
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999997653
No 408
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=53.24 E-value=8.5 Score=33.54 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
+.+++.+|.|||||.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 3688999999999976543
No 409
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=52.94 E-value=38 Score=37.86 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=52.9
Q ss_pred HhCCCccEEEEecchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc-cc-----c---
Q 009048 254 KANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG-----M--- 320 (545)
Q Consensus 254 ~~~~~~~~IIf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~-----~--- 320 (545)
....+..++|.++|+.-|.+.++.+.. .|+++..+.|+++.+.|.... ..+|+++|+. ++ .
T Consensus 148 ~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~ 221 (922)
T 1nkt_A 148 NALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMA 221 (922)
T ss_dssp HHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhh
Confidence 333456799999999988887777654 599999999999988776543 3789999973 21 1
Q ss_pred ----ccccCCCcEEEE
Q 009048 321 ----GIDRKDVRLVCH 332 (545)
Q Consensus 321 ----GiD~p~v~~VI~ 332 (545)
.++...+.++|.
T Consensus 222 ~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 222 HSLDDLVQRGHHYAIV 237 (922)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred ccHhhhccCCCCEEEE
Confidence 345566777663
No 410
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=52.52 E-value=7.8 Score=35.28 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
..+.+.+|+|||||....+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999976543
No 411
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=52.50 E-value=8 Score=34.19 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (545)
.+.-+++.++.|||||.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456788999999999976543
No 412
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=52.48 E-value=8.9 Score=33.56 Aligned_cols=17 Identities=24% Similarity=0.067 Sum_probs=13.8
Q ss_pred CEEEEcCCCchHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (545)
-.++++|+|+|||...-
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 45789999999997543
No 413
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=52.45 E-value=1.4e+02 Score=27.19 Aligned_cols=178 Identities=14% Similarity=0.030 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc
Q 009048 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (545)
Q Consensus 90 L~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (545)
+.....+.+++.|.....................+.... ++-++..|..-........+... .+-+|++|..-.
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~----~iPvV~~~~~~~ 93 (272)
T 3o74_A 20 IAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARR--CDALFVASCLPPEDDSYRELQDK----GLPVIAIDRRLD 93 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCCCSSCCHHHHHHHT----TCCEEEESSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEecCccccHHHHHHHHHc----CCCEEEEccCCC
Confidence 444445556678888777766655554444555554443 45555555432223333333322 366777774321
Q ss_pred ---ccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHH----HHHHHhcCCCCeEEeccCCCCcceeeeecccch
Q 009048 170 ---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK----DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (545)
Q Consensus 170 ---i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~----~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~ 242 (545)
+...+.|....-..+.+.+.......+.+++......... -+...+.-.... ...........
T Consensus 94 ~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~----------~~~~~~~~~~~ 163 (272)
T 3o74_A 94 PAHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGE----------VRRYQGEAFSR 163 (272)
T ss_dssp TTTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSE----------EEEEEESSSSH
T ss_pred ccccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCC----------hheeecCCCCH
Confidence 1112233333333343333344566677777655432211 111222111100 01111111223
Q ss_pred hhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCC
Q 009048 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI 283 (545)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~ 283 (545)
+.....+.+++...+..+.-|||.+-..+..+...|++.|+
T Consensus 164 ~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 204 (272)
T 3o74_A 164 ECGQRLMQQLIDDLGGLPDALVTTSYVLLQGVFDTLQARPV 204 (272)
T ss_dssp HHHHHHHHHHHHHHTSCCSEEEESSHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEeCchHHHHHHHHHHHcCC
Confidence 45566677777766524567889888888888888888763
No 414
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=52.42 E-value=7.5 Score=35.63 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (545)
.+.-+++.|++|||||.....
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHH
Confidence 345688999999999986543
No 415
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=52.33 E-value=5.3 Score=39.22 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
...+++.||+|+|||....
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999997654
No 416
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=52.32 E-value=1.2e+02 Score=33.47 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=77.4
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhcc
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~ 156 (545)
.+.++||++..+..+.-....|...|+....++++.+...+.........+.....+++++.... ..| .+.
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ag-g~G--------lNL 641 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAG-GLG--------INL 641 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHH-TTT--------CCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccc-cCC--------CCc
Confidence 46789999999998888888888899999999999999999999888877554443444443322 222 122
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCE----EEEEcCCChhhHHHHHHHhcCCCCe
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI----LALTATAAPKVQKDVMESLCLQNPL 221 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~----l~lTAT~~~~~~~~i~~~l~~~~~~ 221 (545)
...+.||+=+ ..|. .......++++.+.-...++ +....|....+.......+.+....
T Consensus 642 ~~a~~VI~~D----~~wn--p~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~v 704 (800)
T 3mwy_W 642 MTADTVVIFD----SDWN--PQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAI 704 (800)
T ss_dssp TTCCEEEESS----CCSC--SHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC--
T ss_pred cccceEEEec----CCCC--hhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 2244444322 2354 33334445544433222233 3444555555555555666555444
No 417
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=52.17 E-value=1.5e+02 Score=27.49 Aligned_cols=177 Identities=11% Similarity=0.022 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc
Q 009048 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (545)
Q Consensus 90 L~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (545)
++.-..+.+.+.|.....................+.... ++-+++.|........ +.... ...+-+|++|-...
T Consensus 38 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgii~~~~~~~~~~~---~~~~~-~~~iPvV~~~~~~~ 111 (293)
T 2iks_A 38 IANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQ--VDAIIVSTSLPPEHPF---YQRWA-NDPFPIVALDRALD 111 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCSSCTTCHH---HHTTT-TSSSCEEEEESCCC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcC--CCEEEEeCCCCCcHHH---HHHHH-hCCCCEEEECCccC
Confidence 333444455667776665544433333333344443332 4445544432211111 12221 22366777774211
Q ss_pred ---ccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhHH----HHHHHhcCCCCeEEeccCCCCcceeeeecccch
Q 009048 170 ---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK----DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (545)
Q Consensus 170 ---i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~----~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~ 242 (545)
+..-+.|....-..+.+.+.......+.+++......... -+...+.-... ...+........
T Consensus 112 ~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~----------~~~~~~~~~~~~ 181 (293)
T 2iks_A 112 REHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPR----------EVHFLYANSYER 181 (293)
T ss_dssp TTTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCC----------CEEEEEESSSCH
T ss_pred cCCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHcCC----------CccEEEcCCCCh
Confidence 1111223232223333333334667788887764332211 11222211111 011111111122
Q ss_pred hhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCC
Q 009048 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI 283 (545)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~ 283 (545)
..-...+.+++... ..+.-|||.+...+..+...|++.|+
T Consensus 182 ~~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~ 221 (293)
T 2iks_A 182 EAAAQLFEKWLETH-PMPQALFTTSFALLQGVMDVTLRRDG 221 (293)
T ss_dssp HHHHHHHHHHTTTS-CCCSEEEESSHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHhcC-CCCCEEEECChHHHHHHHHHHHHcCC
Confidence 33445556666543 34678899888888888888877554
No 418
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=51.87 E-value=9.8 Score=31.80 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=31.7
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCc-EEEecCCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (545)
++.++||||.+-......+..|.+.|+. +..+.||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3568999999988888999999999995 888999984
No 419
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=51.59 E-value=14 Score=34.83 Aligned_cols=18 Identities=22% Similarity=-0.012 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (545)
.-+++.|++|||||....
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 457899999999997543
No 420
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=51.50 E-value=1.6e+02 Score=27.61 Aligned_cols=182 Identities=14% Similarity=0.080 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccC-hhhHHHHHhhhccCCccEEEEecc
Q 009048 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEA 167 (545)
Q Consensus 89 aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t-~~~~~~l~~~~~~~~l~~iViDEa 167 (545)
.++....+.+++.|.....................+.... ++-+++.|..... ...+..+.. ..+-+|++|..
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~----~~iPvV~~~~~ 92 (313)
T 3m9w_A 19 KDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRG--VDVLVIIPYNGQVLSNVVKEAKQ----EGIKVLAYDRM 92 (313)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEEECSSTTSCHHHHHHHHT----TTCEEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcC--CCEEEEeCCChhhhHHHHHHHHH----CCCeEEEECCc
Confidence 4555555667778888777766555554444555554443 4444444432211 222333322 23677888753
Q ss_pred ccc----cccCCCCHHH-HHHHHHHHHhCCCcCEEEEEcCCChhhHH-------HHHHHhcCCCCeEEeccCCCCcceee
Q 009048 168 HCI----SSWGHDFRPS-YRKLSSLRNYLPDVPILALTATAAPKVQK-------DVMESLCLQNPLVLKSSFNRPNLFYE 235 (545)
Q Consensus 168 H~i----~~~g~~fr~~-~~~l~~l~~~~~~~~~l~lTAT~~~~~~~-------~i~~~l~~~~~~~~~~~~~r~ni~~~ 235 (545)
..- ..-+.|.... +.....+....+...+.++++........ +.....+......+... .
T Consensus 93 ~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~--------~ 164 (313)
T 3m9w_A 93 INDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGD--------Q 164 (313)
T ss_dssp CTTSCCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEE--------E
T ss_pred CCCCCceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEee--------c
Confidence 211 1112233332 33333444366777888888765433211 11111111111111000 0
Q ss_pred eecccchhhHHHHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCc
Q 009048 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (545)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~ 284 (545)
+............+.+++...+..+..|||.+-..+..+...|++.|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 165 WVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp ECGGGCHHHHHHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTTTCT
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHcCCC
Confidence 0111122445666777777763456789999988898999999998863
No 421
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=51.37 E-value=40 Score=34.15 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=13.8
Q ss_pred CEEEEcCCCchHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (545)
-++++++.|||||....
T Consensus 260 lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997654
No 422
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=51.34 E-value=8.8 Score=34.01 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=13.2
Q ss_pred CEEEEcCCCchHHHHH
Q 009048 55 DCFCLMPTGGGKSMCY 70 (545)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (545)
.+.+.+|.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999654
No 423
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=51.33 E-value=6.7 Score=35.50 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (545)
|.-+.+.+|+|||||...
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446778999999999643
No 424
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=51.31 E-value=8.5 Score=33.22 Aligned_cols=20 Identities=25% Similarity=0.094 Sum_probs=16.3
Q ss_pred CCEEEEcCCCchHHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQIP 73 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp 73 (545)
+.+++.++.|||||.+...-
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57899999999999866543
No 425
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=51.25 E-value=12 Score=33.58 Aligned_cols=20 Identities=15% Similarity=-0.228 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (545)
+.-+.+.+++|+|||....+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44577899999999975443
No 426
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=51.20 E-value=16 Score=39.66 Aligned_cols=70 Identities=9% Similarity=0.162 Sum_probs=49.8
Q ss_pred ccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc-----cccc-c-ccCCC
Q 009048 259 TCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKDV 327 (545)
Q Consensus 259 ~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-----~~~G-i-D~p~v 327 (545)
.++||.++++.-+.+.+..+.+. ++.+..++|+.+...+...+ . ...+|+|+|.- +..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 67999999999998888888764 78999999998654332221 1 24789999962 2222 3 56678
Q ss_pred cEEEE
Q 009048 328 RLVCH 332 (545)
Q Consensus 328 ~~VI~ 332 (545)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88874
No 427
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=51.15 E-value=8.7 Score=33.79 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
+.-+++.+++|||||....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457899999999997654
No 428
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=50.99 E-value=11 Score=33.98 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=14.1
Q ss_pred EEEEcCCCchHHHHHHH
Q 009048 56 CFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~l 72 (545)
+++.||.|||||.....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999986543
No 429
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=50.83 E-value=10 Score=39.35 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
..++++.||+|+|||....
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999997653
No 430
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=50.76 E-value=8.6 Score=34.77 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.0
Q ss_pred EEEEcCCCchHHHHHHH
Q 009048 56 CFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~l 72 (545)
+++.||.|||||.....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999976543
No 431
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=50.70 E-value=11 Score=33.39 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=16.5
Q ss_pred HcCCCEEEEcCCCchHHHHHH
Q 009048 51 LSGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~~ 71 (545)
..+.-+++.+++|||||....
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 345678899999999997543
No 432
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=50.60 E-value=11 Score=31.94 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=31.1
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCCc-EEEecCCC
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGL 292 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l 292 (545)
.+.++||||.+-..+...+..|...|+. +..+.||+
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 3567999999988899999999999985 88888886
No 433
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=50.46 E-value=17 Score=32.34 Aligned_cols=57 Identities=7% Similarity=-0.007 Sum_probs=35.6
Q ss_pred CCccEEEEecchhhHHH-HHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc
Q 009048 257 GDTCAIVYCLERTTCDE-LSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~-l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (545)
...++||.|+++.-+++ +.+.+.. .++.+..++|+.....+...+. +..+|+|+|..
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 35689999999998887 5555544 3678888998765332211111 24678998853
No 434
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=50.29 E-value=6.5 Score=42.27 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.9
Q ss_pred CEEEEcCCCchHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (545)
++++.||+|+|||..+.
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 89999999999997543
No 435
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=50.12 E-value=11 Score=36.92 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=21.2
Q ss_pred EEEEcCCCchHHHHHHH-HHhcCCCeEEEEcCh
Q 009048 56 CFCLMPTGGGKSMCYQI-PALAKPGIVLVVSPL 87 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~l-p~l~~~~~~lVi~P~ 87 (545)
+++.++.|+|||...-. .....+.++.||.|.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 57899999999975433 223345566666664
No 436
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=50.09 E-value=6.6 Score=39.36 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=13.2
Q ss_pred CEEEEcCCCchHHHHH
Q 009048 55 DCFCLMPTGGGKSMCY 70 (545)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (545)
-.++.||||+|||...
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3578999999999753
No 437
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=49.95 E-value=11 Score=33.84 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=24.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCC
Q 009048 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (545)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~ 204 (545)
...+++++||+..+......| ...|..+... ..++++-|.|.+
T Consensus 104 ~~~dvlilDE~g~~~~~~~~~---~~~l~~~l~~--~~~~ilgti~vs 146 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQLF---IQAVRQTLST--PGTIILGTIPVP 146 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSHH---HHHHHHHHHC--SSCCEEEECCCC
T ss_pred cCCCEEEEeCCCccccccHHH---HHHHHHHHhC--CCcEEEEEeecC
Confidence 457899999986664322223 3445555553 345665577753
No 438
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=49.76 E-value=9.6 Score=32.88 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
+-+++.++.|||||.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4578999999999976543
No 439
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=49.61 E-value=8.8 Score=33.80 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
+.-+++.++.|+|||....
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457899999999997543
No 440
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=49.60 E-value=7.7 Score=34.96 Aligned_cols=19 Identities=21% Similarity=-0.143 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
|.-+.+.+|+|||||...-
T Consensus 6 ~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 4456789999999997543
No 441
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=49.57 E-value=24 Score=33.83 Aligned_cols=70 Identities=19% Similarity=0.112 Sum_probs=50.4
Q ss_pred CccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc-----c-cccccCCC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----G-MGIDRKDV 327 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-----~-~GiD~p~v 327 (545)
+.++||.++++.-+.++++.+.+. +..+..+||+.+....... +. ..+|+|+|.-. . ..++..++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 457999999999999999998853 5788999999887654332 22 37899999532 1 12456667
Q ss_pred cEEEE
Q 009048 328 RLVCH 332 (545)
Q Consensus 328 ~~VI~ 332 (545)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77774
No 442
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=49.56 E-value=1e+02 Score=31.56 Aligned_cols=98 Identities=9% Similarity=-0.057 Sum_probs=65.2
Q ss_pred CCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccC
Q 009048 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (545)
Q Consensus 78 ~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~ 157 (545)
++..+|+...+.-+....+.|.+.+..+..+++..+...+..+......+. .+++++|+.++.+ -.+..
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~--~~vLv~T~~~~~~---------GiDip 415 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK--GIIIVASYGVFST---------GISVK 415 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC--SCEEEEEHHHHHH---------SCCCC
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC--CCEEEEEcChhhc---------ccccc
Confidence 455555554466667788888888889999999999988888888887765 6677777544432 22344
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC
Q 009048 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (545)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~ 192 (545)
.+++||+..+. |+ ....+..+++.-+..+
T Consensus 416 ~v~~vi~~~~~----~s--~~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 416 NLHHVVLAHGV----KS--KIIVLQTIGRVLRKHG 444 (510)
T ss_dssp SEEEEEESSCC----CS--CCHHHHHHHHHHTTTC
T ss_pred cCcEEEEeCCC----CC--HHHHHHHHhcccccCC
Confidence 47788876655 33 3444566666655443
No 443
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=49.55 E-value=48 Score=37.24 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=46.0
Q ss_pred HHhCCCccEEEEecchhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEeccc
Q 009048 253 LKANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (545)
Q Consensus 253 l~~~~~~~~IIf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (545)
+....+..++|.++|+.-|.+.++.+.. .|+++..+.|+++.+.|.... .++|+++|+.
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 3334456799999999988887776654 599999999999988776654 3789999964
No 444
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=49.44 E-value=9.8 Score=39.97 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (545)
++.++++.++||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 4578999999999999764
No 445
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=49.33 E-value=11 Score=32.98 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
..+++.+++|||||.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3578999999999976543
No 446
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=48.61 E-value=9.4 Score=33.50 Aligned_cols=38 Identities=21% Similarity=0.062 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHH-HH-hcCCCeEEEEcChHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQI-PA-LAKPGIVLVVSPLIALME 92 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~l-p~-l~~~~~~lVi~P~~aL~~ 92 (545)
-+++.|+.|+|||..... .. +...+..+.+.|+-.++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML 42 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence 368899999999975432 22 222233333336554443
No 447
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=48.47 E-value=10 Score=34.61 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHHH
Q 009048 56 CFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~ 71 (545)
+++.+|+||||+....
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999997543
No 448
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=48.42 E-value=8 Score=35.15 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|.-+.+.+|+|+|||....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34567899999999996543
No 449
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=47.98 E-value=11 Score=34.30 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (545)
+..+++.||.|||||.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999976543
No 450
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=47.90 E-value=9.4 Score=35.52 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (545)
.|.-+.+.+|.|+|||...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4667889999999999744
No 451
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=47.77 E-value=9.8 Score=33.37 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.1
Q ss_pred CEEEEcCCCchHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (545)
-+++.++.|||||....
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999998654
No 452
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=47.65 E-value=10 Score=34.85 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
.+-+++.+|+||||+....
T Consensus 29 ~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp CEEEEEECCTTCCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3557889999999987543
No 453
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=47.12 E-value=11 Score=34.18 Aligned_cols=19 Identities=21% Similarity=0.252 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
+..+++.++.|||||....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567899999999997544
No 454
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=46.99 E-value=11 Score=35.36 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCchHHHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQIP 73 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp 73 (545)
.|.-+.+.+|+|||||...-+-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~L 47 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKAL 47 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3556789999999999865443
No 455
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=46.85 E-value=8.9 Score=37.40 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|.-+.+++|+|+|||...-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHH
Confidence 46678899999999997543
No 456
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=46.84 E-value=12 Score=33.38 Aligned_cols=20 Identities=15% Similarity=-0.039 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|.-+++.|+.|||||....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45668899999999997544
No 457
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=46.56 E-value=14 Score=46.86 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=17.5
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 009048 51 LSGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~ 70 (545)
..++.++++||||+|||+..
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 35789999999999999765
No 458
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=46.30 E-value=11 Score=33.54 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009048 54 RDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (545)
.-+++.++.|||||.....
T Consensus 21 ~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578899999999976543
No 459
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=46.17 E-value=11 Score=33.72 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 009048 56 CFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~l 72 (545)
+.+.||.|||||...-+
T Consensus 5 i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999976543
No 460
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=46.04 E-value=9.3 Score=34.17 Aligned_cols=20 Identities=25% Similarity=0.013 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.+.-+++.|+.|||||....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 34567899999999997543
No 461
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=45.91 E-value=28 Score=35.44 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=43.9
Q ss_pred CCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcc
Q 009048 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (545)
Q Consensus 78 ~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe 139 (545)
.+.+||++|++.-++...+.|++.++.+..+++. .+..+......+. .+++++|..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~--~~vLVaT~v 226 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEK--WDFVITTDI 226 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSC--CSEEEECGG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCC--CeEEEECch
Confidence 5689999999999999999999999999999876 3444555555554 778887753
No 462
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=45.87 E-value=11 Score=33.66 Aligned_cols=18 Identities=28% Similarity=0.087 Sum_probs=14.5
Q ss_pred CEEEEcCCCchHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (545)
.+.+.++.|||||...-.
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 367899999999986544
No 463
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=45.77 E-value=13 Score=42.40 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=46.7
Q ss_pred CccEEEEecchhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEecccc-----ccc-c-ccCC
Q 009048 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (545)
Q Consensus 258 ~~~~IIf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-----~~G-i-D~p~ 326 (545)
+.++||.++++.-+.+++..+.+. ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 567999999999998888877764 899999999987655332221 246899999531 111 2 4556
Q ss_pred CcEEEE
Q 009048 327 VRLVCH 332 (545)
Q Consensus 327 v~~VI~ 332 (545)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787774
No 464
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=45.70 E-value=11 Score=33.03 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|.-+++.++.|||||...-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35567889999999997543
No 465
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=45.69 E-value=9.5 Score=34.52 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.2
Q ss_pred CEEEEcCCCchHHHHH
Q 009048 55 DCFCLMPTGGGKSMCY 70 (545)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (545)
-.++.+|+|+|||.+.
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4578999999999754
No 466
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=45.56 E-value=12 Score=33.81 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH
Q 009048 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 40 r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~ 71 (545)
++.+... ..+..|.-+++.++.|+|||....
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 3444444 223456678899999999997543
No 467
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=45.52 E-value=12 Score=33.22 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.3
Q ss_pred EEEEcCCCchHHHHHH
Q 009048 56 CFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~ 71 (545)
+++.|+.|+|||....
T Consensus 3 I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 6789999999997543
No 468
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=45.44 E-value=1.2e+02 Score=30.34 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=27.4
Q ss_pred CccEEEECcc------cccChhhHHHHHhhhccCCccEEEEecccc
Q 009048 130 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (545)
Q Consensus 130 ~~~il~~tpe------~~~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (545)
+..++++.|. .+.+++++..+.++.....+ +||+||+|.
T Consensus 201 ~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~ 245 (453)
T 2cy8_A 201 DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGA-LFILDEVIS 245 (453)
T ss_dssp GEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecCcc
Confidence 4678888875 22356677777766655443 789999997
No 469
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=45.38 E-value=12 Score=34.82 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
+.-+++.||.|||||...-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997543
No 470
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=45.38 E-value=12 Score=37.56 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|+-+++.+|+|+|||....
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678899999999997543
No 471
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=45.36 E-value=15 Score=36.46 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=26.1
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHH-HHHHHhc--C------CCeEEEEcC
Q 009048 46 AIQAVLS-----GRDCFCLMPTGGGKSMC-YQIPALA--K------PGIVLVVSP 86 (545)
Q Consensus 46 ~i~~il~-----g~d~lv~apTGsGKTl~-~~lp~l~--~------~~~~lVi~P 86 (545)
.++.++. |.-+.+.+|+|+|||.. .++.... . ++.+++|.-
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 4556654 35678999999999954 4444443 1 356677753
No 472
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=45.20 E-value=22 Score=33.64 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=33.2
Q ss_pred CCccEEEEecchhhHHHHHHHHHhCCC-cEEEecCCCCH
Q 009048 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 294 (545)
Q Consensus 257 ~~~~~IIf~~t~~~~~~l~~~L~~~g~-~~~~~h~~l~~ 294 (545)
.+.++|+||.+-..+...+..|...|+ ++..|.||+..
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 457899999998889999999999999 48999999864
No 473
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=44.96 E-value=13 Score=31.96 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q 009048 56 CFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~ 71 (545)
+++.++.|||||....
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEESCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997654
No 474
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=44.85 E-value=17 Score=32.27 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=13.7
Q ss_pred CEEEEcCCCchHHHHH
Q 009048 55 DCFCLMPTGGGKSMCY 70 (545)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (545)
-+++.++.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999765
No 475
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=44.70 E-value=11 Score=35.02 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (545)
.|.-+.+.+|.|+|||...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999744
No 476
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=44.62 E-value=13 Score=34.00 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.5
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|.-+.+.+|.|+|||...-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56778899999999997543
No 477
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=44.58 E-value=13 Score=34.22 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (545)
+..+++.+++|||||.....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999976543
No 478
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=44.36 E-value=2e+02 Score=26.70 Aligned_cols=178 Identities=11% Similarity=-0.000 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 009048 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (545)
Q Consensus 89 aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (545)
.++....+.+.+.|.....................+.... ++-++..|.... . . + .......+-+|++|...
T Consensus 31 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiIi~~~~~~-~-~---~-~~~~~~~iPvV~~~~~~ 102 (301)
T 3miz_A 31 DIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHR--IDGVLYVTMYRR-I-V---D-PESGDVSIPTVMINCRP 102 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEEEEEEEE-E-C---C-CCCTTCCCCEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEecCCcc-H-H---H-HHHHhCCCCEEEECCCC
Confidence 5666666677888888877766555554445555555444 333333332110 0 1 1 11112236677777432
Q ss_pred c----ccccCCCCHHHHHHHHHHHHhCCCcCEEEEEcCCChhhH-------HHHHHHhcCCCC-eEEeccCCCCcceeee
Q 009048 169 C----ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ-------KDVMESLCLQNP-LVLKSSFNRPNLFYEV 236 (545)
Q Consensus 169 ~----i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~-------~~i~~~l~~~~~-~~~~~~~~r~ni~~~v 236 (545)
. +...+.|....-....+.+.......+.+++........ .+.....++... ..+....
T Consensus 103 ~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--------- 173 (301)
T 3miz_A 103 QTRELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGM--------- 173 (301)
T ss_dssp SSTTSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECE---------
T ss_pred CCCCCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcC---------
Confidence 1 111223333333344444444566778888876543221 111222232211 1111100
Q ss_pred ecccchhhHH--HHHHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCCc
Q 009048 237 RYKDLLDDAY--ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (545)
Q Consensus 237 ~~~~~~~~~~--~~l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~~ 284 (545)
......+.-. ..+.+++... ..+.-|||.+...+..+...|++.|+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~-~~~~ai~~~~d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 174 DGPVGAENNYVFAAATEMLKQD-DRPTAIMSGNDEMAIQIYIAAMALGLR 222 (301)
T ss_dssp ESSTTSCEECHHHHHHHHHTST-TCCSEEEESSHHHHHHHHHHHHTTTCC
T ss_pred CCCcCccccHHHHHHHHHHcCC-CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 0000001112 4455566543 346788999888888899999888764
No 479
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=44.32 E-value=11 Score=33.06 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
|.-+++.++.|+|||....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4567899999999997543
No 480
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=44.27 E-value=31 Score=32.62 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=33.6
Q ss_pred HHHHHcC-----CCEEEEcCC-CchHHHHHHH--HHhcCCCeEEEEcChHHHHHHHHHHHHHcCCce
Q 009048 47 IQAVLSG-----RDCFCLMPT-GGGKSMCYQI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (545)
Q Consensus 47 i~~il~g-----~d~lv~apT-GsGKTl~~~l--p~l~~~~~~lVi~P~~aL~~qq~~~l~~~gi~~ 105 (545)
++.++.| ..+++.+.+ |+|||+++++ ..+.++.++++++-.-.. .+..+.++.+|+..
T Consensus 10 LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~-~~l~~~~~~~G~dl 75 (260)
T 3bs4_A 10 LDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPL-QLIIRILSRFGVDV 75 (260)
T ss_dssp HHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCH-HHHHHHHHHTTCCH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCH-HHHHHHHHHcCCCH
Confidence 4555543 567777444 4555555443 456778888888743332 34455666676653
No 481
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=44.22 E-value=8.8 Score=33.85 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=12.9
Q ss_pred CEEEEcCCCchHHHHH
Q 009048 55 DCFCLMPTGGGKSMCY 70 (545)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (545)
-+.+++++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568899999999654
No 482
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=43.68 E-value=12 Score=33.11 Aligned_cols=20 Identities=20% Similarity=-0.024 Sum_probs=15.3
Q ss_pred CEEEEcCCCchHHHHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQIPA 74 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~ 74 (545)
-+.+.+++|||||.....-+
T Consensus 10 ~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999998655433
No 483
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=43.63 E-value=22 Score=33.72 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=36.6
Q ss_pred HHHHHHhCCCccEEEEecchhhHHHHHHHHHhCCC-cEEEecCCCCH
Q 009048 249 LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 294 (545)
Q Consensus 249 l~~~l~~~~~~~~IIf~~t~~~~~~l~~~L~~~g~-~~~~~h~~l~~ 294 (545)
+...+...++.++++||.+-..+...+..|.+.|+ ++..+.||+..
T Consensus 172 l~~~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 172 VQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILN 218 (265)
T ss_dssp HHHHTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred HHHhhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 33334445677899999999999999999999998 58899998743
No 484
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=43.07 E-value=19 Score=31.20 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCY 70 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (545)
.|.-+.+.+|.|+|||...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SCEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556788999999999644
No 485
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=42.96 E-value=12 Score=35.73 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|.-+.+.+|.|+|||...-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678899999999997543
No 486
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=42.88 E-value=11 Score=32.80 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=12.1
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (545)
+.-+++.++.|||||.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45678999999999986554
No 487
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=42.72 E-value=21 Score=38.68 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=45.5
Q ss_pred CCeEEEEcChHHHHHHHHHHHHHc------CCceeEeccc--------ccHHHHHHHHHhhhcCCCCccEEEEC
Q 009048 78 PGIVLVVSPLIALMENQVIGLKEK------GIAGEFLSST--------QTMQVKTKIYEDLDSGKPSLRLLYVT 137 (545)
Q Consensus 78 ~~~~lVi~P~~aL~~qq~~~l~~~------gi~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~il~~t 137 (545)
++.+||+++++..+....+.|+.. |+.+..+++. .+...+..+......+. .+++++|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~--~~VLVaT 471 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK--INLLIAT 471 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEE
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC--CcEEEEc
Confidence 688999999999999999999876 8999999998 88899999988887765 6676666
No 488
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=42.51 E-value=14 Score=33.61 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQI 72 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (545)
+..+++.++.|||||.....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34678899999999976543
No 489
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=42.33 E-value=13 Score=33.58 Aligned_cols=16 Identities=25% Similarity=0.090 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q 009048 56 CFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~ 71 (545)
+++.++.|||||....
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997554
No 490
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=42.27 E-value=15 Score=40.23 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCE--EEEcCCCchHHHHH
Q 009048 45 DAIQAVLSGRDC--FCLMPTGGGKSMCY 70 (545)
Q Consensus 45 ~~i~~il~g~d~--lv~apTGsGKTl~~ 70 (545)
..++.+++|.++ |.-++||||||...
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 467888899874 56789999999864
No 491
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=42.23 E-value=14 Score=35.97 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=20.3
Q ss_pred CCCEEEEcCCCchHHHHHH-HHHhc--CCCeEEEEc
Q 009048 53 GRDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp~l~--~~~~~lVi~ 85 (545)
|.-+.+++|+|+|||.... +..+. .++.+++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4457789999999996433 33222 345555544
No 492
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=42.13 E-value=21 Score=39.43 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009048 53 GRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (545)
..++++.+|+|+|||.+..
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999997654
No 493
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=42.03 E-value=16 Score=37.34 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=39.7
Q ss_pred CCCeEEEEcChHHHHHHHHHHHHHcCCceeEecccccHHHHHHHHHhhhcCCCCccEEEECcc
Q 009048 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (545)
Q Consensus 77 ~~~~~lVi~P~~aL~~qq~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe 139 (545)
.++.+||++|++.-+....+.|+..|+.+..+++. .+..+......+ ..+++++|..
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~----~R~~~~~~F~~g--~~~vLVaT~v 232 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK----TFEREYPTIKQK--KPDFILATDI 232 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS----SCC--------C--CCSEEEESSS
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch----hHHHHHhhhcCC--CceEEEECCh
Confidence 36789999999999999999999999999998873 233444444444 4778888753
No 494
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=42.00 E-value=13 Score=34.83 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|.-+.+.+|.|+|||...-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46778899999999997543
No 495
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=41.89 E-value=14 Score=34.24 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.|.-+.+.+|.|+|||...-
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~ 52 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46778899999999997543
No 496
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=41.89 E-value=20 Score=39.57 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.6
Q ss_pred CEEEEcCCCchHHHHHH
Q 009048 55 DCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (545)
.+++.||||+|||....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999997654
No 497
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=41.79 E-value=14 Score=33.68 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q 009048 56 CFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 56 ~lv~apTGsGKTl~~~ 71 (545)
+++.++.|||||....
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999997554
No 498
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=41.75 E-value=14 Score=33.05 Aligned_cols=20 Identities=20% Similarity=0.044 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009048 52 SGRDCFCLMPTGGGKSMCYQ 71 (545)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (545)
.+.-+++.|+.|||||....
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 35668899999999997543
No 499
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=41.75 E-value=12 Score=36.22 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=20.7
Q ss_pred CCCEEEEcCCCchHHHHHH-HHHhc--CCCeEEEEc
Q 009048 53 GRDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (545)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp~l~--~~~~~lVi~ 85 (545)
|.-+.+++|+|+|||...- +..+. .++.+++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3456789999999996432 33222 356666654
No 500
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=41.72 E-value=11 Score=37.06 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.1
Q ss_pred CEEEEcCCCchHHHHH
Q 009048 55 DCFCLMPTGGGKSMCY 70 (545)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (545)
-.++++|+|+|||...
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3578999999999753
Done!