Query 009049
Match_columns 545
No_of_seqs 121 out of 272
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 19:47:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2233 Alpha-N-acetylglucosam 100.0 5E-157 1E-161 1220.9 40.0 500 1-538 164-666 (666)
2 PF05089 NAGLU: Alpha-N-acetyl 100.0 2.6E-94 5.7E-99 738.3 11.6 228 1-235 105-332 (333)
3 PF12972 NAGLU_C: Alpha-N-acet 100.0 6.7E-81 1.5E-85 631.2 22.8 267 241-536 1-267 (267)
4 PF02449 Glyco_hydro_42: Beta- 84.8 1 2.2E-05 48.1 4.2 82 2-89 58-140 (374)
5 PF00150 Cellulase: Cellulase 75.7 11 0.00024 37.4 7.9 85 61-154 105-200 (281)
6 PF12891 Glyco_hydro_44: Glyco 54.1 6.9 0.00015 39.9 1.5 99 13-118 47-176 (239)
7 COG1422 Predicted membrane pro 43.6 73 0.0016 31.8 6.7 65 355-419 65-130 (201)
8 PF10629 DUF2475: Protein of u 33.8 18 0.0004 30.1 0.8 12 8-19 4-15 (71)
9 cd03198 GST_C_CLIC GST_C famil 32.2 1.2E+02 0.0027 28.0 6.1 43 367-409 5-47 (134)
10 PF13410 GST_C_2: Glutathione 29.3 83 0.0018 24.4 3.8 28 388-416 3-30 (69)
11 PF12876 Cellulase-like: Sugar 26.9 89 0.0019 26.3 3.8 53 69-122 2-64 (88)
12 PF08858 IDEAL: IDEAL domain; 25.3 2.7E+02 0.0058 20.2 5.8 33 364-396 4-37 (37)
13 COG5005 Mu-like prophage prote 25.2 20 0.00043 33.3 -0.5 31 156-186 75-105 (140)
14 PF07328 VirD1: T-DNA border e 22.1 3.2E+02 0.007 25.7 6.6 53 355-409 73-128 (147)
15 cd03190 GST_C_ECM4_like GST_C 20.9 3.4E+02 0.0074 24.6 6.8 37 379-416 25-61 (142)
No 1
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-157 Score=1220.90 Aligned_cols=500 Identities=43% Similarity=0.824 Sum_probs=482.5
Q ss_pred CCCCCeecCCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 009049 1 MLLADFAVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYN 80 (545)
Q Consensus 1 ~~LGM~PVLPgF~G~VP~~~k~~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~I~~~F~~~q~~~yG~~~h~Y~ 80 (545)
++||||||||+|+||||++++++||.+++++++.|+.|+ .+|||.++|.|+||||.+||.+|+++|+|+||.++|+|+
T Consensus 164 ~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~--s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~tniy~ 241 (666)
T KOG2233|consen 164 LELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFT--SRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGVTNIYS 241 (666)
T ss_pred HHcCCCccchhhccccHHHHHHhCchhceeeccccCCCC--cceeeeEEccCCcchHHHHHHHHHHHHHHHhCCcccccc
Confidence 479999999999999999999999999999999999997 699999999999999999999999999999998899999
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEecccCCCCCCCCchhHHHhhhCCCCCCEEEEecCCCccccc
Q 009049 81 CDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIW 160 (545)
Q Consensus 81 ~D~FnE~~pp~~d~~~L~~~~~~i~~am~~adP~AvWvmQgW~F~~~~fW~~~~~~a~L~~Vp~~~mliLDL~~E~~p~W 160 (545)
||||||+.||+++|+|+++.+.+||+||+++||+||||||||+|.+|+||+++++||||++||.|+||||||++|+.|+|
T Consensus 242 ~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQgWlF~~d~FW~~~~ikafL~avP~GrllVLDLyaEv~P~~ 321 (666)
T KOG2233|consen 242 ADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQGWLFTYDPFWPPWQIKAFLSAVPRGRLLVLDLYAEVVPAW 321 (666)
T ss_pred cCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeecceeecCCCCChHHHHHHHhcCCcCcEEEEehhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceeeeccCCCCccccccchhhhhcChHHhhhCCCCceEEEEeCccccccChhHHHHHHhhcCCCCCCCHH
Q 009049 161 STSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVK 240 (545)
Q Consensus 161 ~~~~~f~G~pwIWc~LhNFGG~~gl~G~l~~i~~~~~~a~~~~~~~m~GiG~tpEGie~NpvvYeL~~d~aW~~~~id~~ 240 (545)
++|.+|+|||||||||||||||.+|+|.++.|..||.+|+..+||+|||+||+||||+||||||+||.|++|+++++|++
T Consensus 322 ~~Tasf~GqpfIWCmLHNFGGn~~lfGal~~InsG~e~Ar~~~nStlVGtGm~~EgI~QN~VvYsf~~e~~wsde~ldl~ 401 (666)
T KOG2233|consen 322 QMTASFQGQPFIWCMLHNFGGNRELFGALQKINSGPELARMKPNSTLVGTGMSMEGIDQNYVVYSFMIERGWSDEPLDLN 401 (666)
T ss_pred HhhhhhcCCceeEEEeeccCCcHhhhhhHHHhccCHHHHhcCCCCceeecccCccccccchhhHHHHHHhccCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcccCCCCCCCCCC-CcceeccCCCCCCcccccccccccCCCCccccccccccC
Q 009049 241 AWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKN-RDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSET 319 (545)
Q Consensus 241 ~Wl~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~-~~~i~~~P~l~p~~~~~~~~~~~~~~~~~~r~~~~~~~~ 319 (545)
.|+++|+++|||..++.+++||.+|.+|||||+++...++ +..+..||+++
T Consensus 402 ~Wlksys~sRY~~~~~~~eaaW~lL~~tvYn~~~~~~~~~~~~~l~rRp~f~---------------------------- 453 (666)
T KOG2233|consen 402 NWLKSYSESRYGVDFKVAEAAWTLLAGTVYNCPGKWATRGFSYFLYRRPSFQ---------------------------- 453 (666)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHhhhhcCCCcccccCCCceeeEeccccc----------------------------
Confidence 9999999999999999999999999999999998776655 55566667653
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHHhccccCCCC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 009049 320 SSYDHPHLWYSTSEVIRALELFIASGNELSAS-NTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLE 398 (545)
Q Consensus 320 ~~~~~~~~~Yd~~~l~~A~~lll~~~~~l~~s-~~y~yDLvDvtRQvL~n~a~~~~~~~~~Ay~~~d~~~~~~~~~~fl~ 398 (545)
.++.+||+.+++..||++||.+.+.+..+ ++|||||||+|||+|+..++++|.++.+||..+|...+.+.|.++++
T Consensus 454 ---~k~~~Wyn~sev~~a~rllL~a~~~l~~e~~~fr~DlvDltRq~lqelanq~y~e~~sAflkkd~~sl~~~~~~lle 530 (666)
T KOG2233|consen 454 ---RKTEYWYNVSEVFSAWRLLLTALVHLLGEHPLFRYDLVDLTRQMLQELANQAYLEARSAFLKKDKQSLGALSEKLLE 530 (666)
T ss_pred ---CCceeeecHHHHHHHHHHHHhhhhhhccCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14678999999999999999998777666 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHhhCCCHHHHHHHHHHhhhcccccCCCCCcCCCCCcccccccccchhhhhhHHHHH
Q 009049 399 LVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAA 478 (545)
Q Consensus 399 li~dlD~LL~t~~~FlLg~Wi~~Ar~~g~~~~ek~~yE~NAR~qIT~WG~~~~~~~~~L~DYA~K~WsGL~~dyY~pRW~ 478 (545)
|++|||.+|+++.+|+||+||++||+.|.+.+|++.||+|||+|||+|||. |+|+||||||||||++|||.|||+
T Consensus 531 lf~dle~~lasd~nfLlg~WleqAk~~A~n~~er~~fe~nar~qlT~Wgp~-----gqilDYA~kqwaGLvsdYY~pRwr 605 (666)
T KOG2233|consen 531 LFQDLESYLASDDNFLLGQWLEQAKSAAPNSEERQVFEVNARDQLTVWGPT-----GQILDYANKQWAGLVSDYYGPRWR 605 (666)
T ss_pred HHHHHHHHHccCcchhHHHHHHHHHhhCCChhhhhhccccccceEEEECCC-----cchhhHHHHHHHHhhhhcccHHHH
Confidence 999999999999999999999999999999999999999999999999995 689999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHH-HHHhhhhhcCCCcCCCCCCCcHHHHHHHHHHHHhc
Q 009049 479 IYFKYMIESLESGDGFRLKDWRREW-IKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQ 538 (545)
Q Consensus 479 ~f~~~l~~~l~~~~~~~~~~~~~~~-~~~E~~W~~~~~~y~~~p~gd~~~~a~~l~~ky~~ 538 (545)
.|++.+.+++..|++|+.++|..+| ..+|.+++.++.+||++|.||++++++.|+.||++
T Consensus 606 lf~e~il~slhd~~pFn~t~f~~~v~~~~e~~fs~s~~vYPv~p~Gdt~~is~~if~ky~P 666 (666)
T KOG2233|consen 606 LFLEWILESLHDGKPFNHTEFSISVFRDVERPFSISNIVYPVKPKGDTLAISRHIFSKYFP 666 (666)
T ss_pred HHHHHHHHHHhcCCCccccchhhHHHHhhhccccccccccccCCCccHHHHHHHHHHhcCC
Confidence 9999999999999999999999999 59999999999999999999999999999999973
No 2
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=100.00 E-value=2.6e-94 Score=738.28 Aligned_cols=228 Identities=55% Similarity=1.084 Sum_probs=164.0
Q ss_pred CCCCCeecCCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 009049 1 MLLADFAVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYN 80 (545)
Q Consensus 1 ~~LGM~PVLPgF~G~VP~~~k~~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~I~~~F~~~q~~~yG~~~h~Y~ 80 (545)
|+|||+||||||+||||++||+++|+|+|+++|.|++| |||++|||+||||++||++||++|+|+|| ++|||+
T Consensus 105 reLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f------~~~~~L~P~dplF~~i~~~F~~~q~~~yG-~~~~Y~ 177 (333)
T PF05089_consen 105 RELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGF------CRPYFLDPTDPLFAEIAKLFYEEQIKLYG-TDHIYA 177 (333)
T ss_dssp HHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTE------E--EEE-SS--HHHHHHHHHHHHHHHHH----SEEE
T ss_pred HHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCC------CCCceeCCCCchHHHHHHHHHHHHHHhcC-CCceeC
Confidence 57999999999999999999999999999999999996 48999999999999999999999999999 789999
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEecccCCCCCCCCchhHHHhhhCCCCCCEEEEecCCCccccc
Q 009049 81 CDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIW 160 (545)
Q Consensus 81 ~D~FnE~~pp~~d~~~L~~~~~~i~~am~~adP~AvWvmQgW~F~~~~fW~~~~~~a~L~~Vp~~~mliLDL~~E~~p~W 160 (545)
+|||||++||+++++||+++|++||++|+++||+||||||||||++++||++++++|||++||++|||||||+||..|+|
T Consensus 178 ~D~FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvmQgWlF~~~~fW~~~~~~a~L~~Vp~~~mliLDL~se~~p~w 257 (333)
T PF05089_consen 178 ADPFNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVMQGWLFYYDPFWTPNPIKALLSGVPKGRMLILDLFSERFPQW 257 (333)
T ss_dssp --TTTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEEEE--------BTTBS-HHHHTT-SGGGEEEEETTTTTS---
T ss_pred CCccCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEEcccccccccccCcchHHHHHcCCCCCCeEEEEccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceeeeccCCCCccccccchhhhhcChHHhhhCCCCceEEEEeCccccccChhHHHHHHhhcCCCC
Q 009049 161 STSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHE 235 (545)
Q Consensus 161 ~~~~~f~G~pwIWc~LhNFGG~~gl~G~l~~i~~~~~~a~~~~~~~m~GiG~tpEGie~NpvvYeL~~d~aW~~~ 235 (545)
+++++|+|||||||||||||||+||+|+++.|+++|.+|+++++++|+|||+|||||||||||||||+|++|+++
T Consensus 258 ~~~~~f~G~pwIwc~L~NFGG~~gl~G~~~~i~~~~~~a~~~~~~~m~G~G~tpEgi~~NpvvYeL~~e~aW~~~ 332 (333)
T PF05089_consen 258 KRTESFYGKPWIWCMLHNFGGNTGLYGNLENIASGPIEARASPNSNMVGIGLTPEGIEQNPVVYELMLEMAWRKD 332 (333)
T ss_dssp HHHHCTT---EEEEE---STT--SS---HHHHHHHHHHHHHT--S-EEEEEE--S-S-S-HHHHHHHHHGGG-SS
T ss_pred ccccccccchhhhhcccCCCCCCCCcccHHHHHhhHHHHHHhcCCCceEEEecccccccCHHHHHHHHHhcccCC
Confidence 999999999999999999999999999999999999999998889999999999999999999999999999975
No 3
>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB, or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This C-terminal domain has an all alpha helical fold [].; PDB: 2VC9_A 2VCC_A 2VCB_A 2VCA_A 4A4A_A.
Probab=100.00 E-value=6.7e-81 Score=631.16 Aligned_cols=267 Identities=41% Similarity=0.823 Sum_probs=204.4
Q ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcccCCCCCCCCCCCcceeccCCCCCCcccccccccccCCCCccccccccccCC
Q 009049 241 AWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETS 320 (545)
Q Consensus 241 ~Wl~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~~~~i~~~P~l~p~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 320 (545)
+||++|++||||+.++++.+||+||++|||++++....++++++++||+++.. ..+
T Consensus 1 ~Wi~~Y~~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~~si~~~rPsl~~~------------------------~~~ 56 (267)
T PF12972_consen 1 EWIKDYATRRYGKYDPEAREAWQILLRTVYNNTGGQYGRGESIFCARPSLNGN------------------------SAS 56 (267)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHHHTTTS---S---SS--GGGS-S-SS---------------------------SS
T ss_pred ChHHHHHHccCCCCCHHHHHHHHHHHhhhCCCCCCCCCCCcCceeeCCCCCcc------------------------ccc
Confidence 69999999999999999999999999999999877777778888888987643 345
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhccccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 009049 321 SYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELV 400 (545)
Q Consensus 321 ~~~~~~~~Yd~~~l~~A~~lll~~~~~l~~s~~y~yDLvDvtRQvL~n~a~~~~~~~~~Ay~~~d~~~~~~~~~~fl~li 400 (545)
+|+++.++|||.+|++||++|++++++|+++++|||||||||||||+|+|+.+|.+|++||+++|.+.|++.+++||+||
T Consensus 57 ~~~~~~~~Yd~~~l~~A~~~ll~a~~~l~~~~~yryDlvDvtRQvL~n~~~~~~~~~~~ay~~~d~~~~~~~~~~~l~ll 136 (267)
T PF12972_consen 57 TWGPPGIWYDPADLEKAWRLLLKAADELKDSETYRYDLVDVTRQVLSNYADELYQQLVDAYNSKDIEAFKALSARFLELL 136 (267)
T ss_dssp TT------S-HHHHHHHHHHHHHCHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCChHHHHHHHHhhCCCHHHHHHHHHHhhhcccccCCCCCcCCCCCcccccccccchhhhhhHHHHHHH
Q 009049 401 EDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIY 480 (545)
Q Consensus 401 ~dlD~LL~t~~~FlLg~Wi~~Ar~~g~~~~ek~~yE~NAR~qIT~WG~~~~~~~~~L~DYA~K~WsGL~~dyY~pRW~~f 480 (545)
+|||+||+||++|+||+||++||++|.|++||++||+|||+|||+|||. |+|+|||||+|+|||+|||+|||++|
T Consensus 137 ~dlD~lL~t~~~f~Lg~Wi~~Ar~~g~~~~e~~~yE~NAR~qIT~Wg~~-----g~l~DYA~k~W~GL~~dyY~pRW~~f 211 (267)
T PF12972_consen 137 DDLDRLLATNPEFLLGKWIEDARAWGTTPEEKDLYEYNARNQITLWGPS-----GELHDYANKQWSGLVSDYYLPRWQMF 211 (267)
T ss_dssp HHHHHHHTT-GGGBHHHHHHHHHHSSTT--HHHHHHHHHHHHTTTSHTT-----TS-TTTT----BTHHHHTHHHHHHHH
T ss_pred HHHHHHHCcCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccCCC-----CCcccchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 58999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhhhhhcCCCcCCCCCCCcHHHHHHHHHHHH
Q 009049 481 FKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKY 536 (545)
Q Consensus 481 ~~~l~~~l~~~~~~~~~~~~~~~~~~E~~W~~~~~~y~~~p~gd~~~~a~~l~~ky 536 (545)
|++|.+++++|++|+..+|+.+++++|++|+++++.||++|+||++++|++|++||
T Consensus 212 ~~~l~~~l~~~~~~d~~~~~~~~~~~E~~W~~~~~~y~~~~~gd~~~~a~~l~~ky 267 (267)
T PF12972_consen 212 FDYLRAALENGRPFDQTAFRRKLFAWEEKWVNSTKVYPTEPTGDPVEVARRLYQKY 267 (267)
T ss_dssp HHHHHHHHTT-S------H----HHHHHHHHTTS----SS-----HHHHHHH----
T ss_pred HHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999998
No 4
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=84.76 E-value=1 Score=48.07 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=61.6
Q ss_pred CCCCeecCCCCCCCCchhhHhhCCCCceecc-CCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 009049 2 LLADFAVLPAFSGNVPAALQNVFPSAKITQL-GNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYN 80 (545)
Q Consensus 2 ~LGM~PVLPgF~G~VP~~~k~~~P~a~i~~~-~~W~gf~~~~~~~~~~~LdP~DplF~~I~~~F~~~q~~~yG~~~h~Y~ 80 (545)
+.||+.||--+.+..|.-+.+++|++..+.. |...++.. ....++.+|.|.+..+.|+++..+.|++.-.+.+
T Consensus 58 ~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~------~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~ 131 (374)
T PF02449_consen 58 KHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRRRGFGS------RQHYCPNSPAYREYARRFIRALAERYGDHPAVIG 131 (374)
T ss_dssp CTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSBEECCC------STT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEE
T ss_pred hccCeEEEEecccccccchhhhcccccccCCCCCcCccCC------ccccchhHHHHHHHHHHHHHHHHhhccccceEEE
Confidence 5799999977788899999999999876543 33333221 1235789999999999999999999998777889
Q ss_pred CCCCCCCCC
Q 009049 81 CDTFDENTP 89 (545)
Q Consensus 81 ~D~FnE~~p 89 (545)
.+..||.+-
T Consensus 132 ~~i~NE~~~ 140 (374)
T PF02449_consen 132 WQIDNEPGY 140 (374)
T ss_dssp EEECCSTTC
T ss_pred EEeccccCc
Confidence 999999765
No 5
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=75.71 E-value=11 Score=37.45 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhCCCCccccCCCCCCCCCCCCC-------hhHHHHHHHHHHHHHhcCCCCceEEEec--ccCCCCCCCC
Q 009049 61 GRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDS-------PEYISSLGAAIYSGMQSGDSDAVWLMQG--WLFSYDPFWR 131 (545)
Q Consensus 61 ~~~F~~~q~~~yG~~~h~Y~~D~FnE~~pp~~d-------~~~L~~~~~~i~~am~~adP~AvWvmQg--W~F~~~~fW~ 131 (545)
-+.|.+...+.|.+...+.+.|++||......+ +..+....++++++|++++|+..=++.| |.
T Consensus 105 ~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~-------- 176 (281)
T PF00150_consen 105 FKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWG-------- 176 (281)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHH--------
T ss_pred HHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCccc--------
Confidence 344777888889434568899999998765332 3567889999999999999995444555 52
Q ss_pred chhHHHhhhCCCC--CCEEEEecCC
Q 009049 132 PPQMKALLNSVPL--GKLVVLDLFA 154 (545)
Q Consensus 132 ~~~~~a~L~~Vp~--~~mliLDL~~ 154 (545)
.....+... .|. +..+|++...
T Consensus 177 ~~~~~~~~~-~P~~~~~~~~~~~H~ 200 (281)
T PF00150_consen 177 ADPDGAAAD-NPNDADNNDVYSFHF 200 (281)
T ss_dssp TBHHHHHHH-STTTTTTSEEEEEEE
T ss_pred cccchhhhc-CcccccCceeEEeeE
Confidence 222221222 663 5677777643
No 6
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=54.11 E-value=6.9 Score=39.88 Aligned_cols=99 Identities=19% Similarity=0.295 Sum_probs=55.5
Q ss_pred CCCCchhh-----HhhCCCCceeccCCCC--------CCCCCCccccccccCCC---ChHHHHHHHHHHHHHHHHhCCC-
Q 009049 13 SGNVPAAL-----QNVFPSAKITQLGNWF--------SVKSDPRWCCTYLLDAT---DPLFIEIGRAFIEQQLKEYGRT- 75 (545)
Q Consensus 13 ~G~VP~~~-----k~~~P~a~i~~~~~W~--------gf~~~~~~~~~~~LdP~---DplF~~I~~~F~~~q~~~yG~~- 75 (545)
.|.|+..= ...||.++.-+|-.|. |....-. .+.-++|+ ++.| ...|+..+++.||+.
T Consensus 47 ~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~--~~~~~~P~~~~~~~y---~~ewV~~l~~~~g~a~ 121 (239)
T PF12891_consen 47 IGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKT--ALTSNDPDTPDNPVY---MDEWVNYLVNKYGNAS 121 (239)
T ss_dssp SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSS--S--SSSGGSSSSEEE---HHHHHHHHHHHH--TT
T ss_pred cceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCC--CCCCCCCCCCccHhH---HHHHHHHHHHHHhccc
Confidence 56676654 6779988888766553 1110000 11223454 3444 567889999999965
Q ss_pred ----CccccCCCCCCCC----------CCCCChhHHHHHHHHHHHHHhcCCCCceEE
Q 009049 76 ----SHIYNCDTFDENT----------PPVDSPEYISSLGAAIYSGMQSGDSDAVWL 118 (545)
Q Consensus 76 ----~h~Y~~D~FnE~~----------pp~~d~~~L~~~~~~i~~am~~adP~AvWv 118 (545)
-+||++| ||.. |-.-..+-|.+-.-+.=++++++||.|.=+
T Consensus 122 ~~~gvk~y~lD--NEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~ 176 (239)
T PF12891_consen 122 TNGGVKYYSLD--NEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF 176 (239)
T ss_dssp STTS--EEEES--S-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred cCCCceEEEec--CchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 2799999 8863 211122346666667778999999999754
No 7
>COG1422 Predicted membrane protein [Function unknown]
Probab=43.60 E-value=73 Score=31.79 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=51.9
Q ss_pred cchHHHHH-HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHH
Q 009049 355 RYDLIDLT-RQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWL 419 (545)
Q Consensus 355 ~yDLvDvt-RQvL~n~a~~~~~~~~~Ay~~~d~~~~~~~~~~fl~li~dlD~LL~t~~~FlLg~Wi 419 (545)
++=+||-- -+-+.+.+++..+++.+|++++|..++++.-++=.++++|+-+|+.-+-.=++=.|+
T Consensus 65 ~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfkPM~~~~v 130 (201)
T COG1422 65 QKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFKPMLYISV 130 (201)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34455533 366889999999999999999999999999999999999999988766554554444
No 8
>PF10629 DUF2475: Protein of unknown function (DUF2475); InterPro: IPR018902 This entry represents both UPF0573 and UPF0605 families. Both these families of proteins have no known function.
Probab=33.76 E-value=18 Score=30.05 Aligned_cols=12 Identities=33% Similarity=0.933 Sum_probs=9.9
Q ss_pred cCCCCCCCCchh
Q 009049 8 VLPAFSGNVPAA 19 (545)
Q Consensus 8 VLPgF~G~VP~~ 19 (545)
.+|||+||||..
T Consensus 4 ~iPgY~G~vP~~ 15 (71)
T PF10629_consen 4 MIPGYTGYVPGY 15 (71)
T ss_pred CCCCccCcCCcc
Confidence 379999999974
No 9
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=32.20 E-value=1.2e+02 Score=28.03 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcc
Q 009049 367 AKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLAC 409 (545)
Q Consensus 367 ~n~a~~~~~~~~~Ay~~~d~~~~~~~~~~fl~li~dlD~LL~t 409 (545)
...+..+|..+..-.++++.+.-+...+++++-++-||..|+.
T Consensus 5 ~~~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~ 47 (134)
T cd03198 5 NTAGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNS 47 (134)
T ss_pred hhhHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHcc
Confidence 3456778888888888888888888889999999999999986
No 10
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=29.25 E-value=83 Score=24.44 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCChH
Q 009049 388 GVFQLSRRFLELVEDMDGLLACHDGFLLG 416 (545)
Q Consensus 388 ~~~~~~~~fl~li~dlD~LL~t~~~FlLg 416 (545)
..++.-+++.+.++.+|.+|+.++ |++|
T Consensus 3 ~~~~~~~~~~~~l~~le~~L~~~~-fl~G 30 (69)
T PF13410_consen 3 AVERARAQLEAALDALEDHLADGP-FLFG 30 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSS-BTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC-CCCC
Confidence 456677889999999999999999 7766
No 11
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=26.90 E-value=89 Score=26.34 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=34.4
Q ss_pred HHHhCCCCccccCCCCCC-CCCCC-------C--ChhHHHHHHHHHHHHHhcCCCCceEEEecc
Q 009049 69 LKEYGRTSHIYNCDTFDE-NTPPV-------D--SPEYISSLGAAIYSGMQSGDSDAVWLMQGW 122 (545)
Q Consensus 69 ~~~yG~~~h~Y~~D~FnE-~~pp~-------~--d~~~L~~~~~~i~~am~~adP~AvWvmQgW 122 (545)
.+.||....+=.-|.+|| -.+.. . ....+...-+.+.+.|+++||..- |.-|.
T Consensus 2 v~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~p-vt~g~ 64 (88)
T PF12876_consen 2 VTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQP-VTSGF 64 (88)
T ss_dssp HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS--EE--B
T ss_pred chhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCc-EEeec
Confidence 356888788999999999 33111 1 234677777899999999999887 54453
No 12
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=25.30 E-value=2.7e+02 Score=20.17 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=25.0
Q ss_pred HHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 009049 364 QALA-KYANELFLNIIEAYQLNDAHGVFQLSRRF 396 (545)
Q Consensus 364 QvL~-n~a~~~~~~~~~Ay~~~d~~~~~~~~~~f 396 (545)
+++. .+=..++.++-.|-..+|.+.|..++.++
T Consensus 4 ~~~~~~~~~~L~~~ID~ALd~~D~e~F~~Ls~eL 37 (37)
T PF08858_consen 4 ESLREFRKEQLLELIDEALDNRDKEWFYELSEEL 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Confidence 3344 34457888999999999999999998864
No 13
>COG5005 Mu-like prophage protein gpG [General function prediction only]
Probab=25.18 E-value=20 Score=33.29 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=24.0
Q ss_pred cccccccccCCCCCCceeeeccCCCCccccc
Q 009049 156 VKPIWSTSKQFYGVPYIWCMLHNFAGNIEMY 186 (545)
Q Consensus 156 ~~p~W~~~~~f~G~pwIWc~LhNFGG~~gl~ 186 (545)
..+.+...-.--|+.=-+..+|||||.+|+-
T Consensus 75 ltt~y~n~~AlvGtne~YaaiHqfGG~~gr~ 105 (140)
T COG5005 75 LTTDYGNNTALVGTNEEYAAIHQFGGKTGRP 105 (140)
T ss_pred ccccCCCceeeecccchhHHHHHhcCcCCCC
Confidence 3555556666778888899999999999963
No 14
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=22.10 E-value=3.2e+02 Score=25.69 Aligned_cols=53 Identities=25% Similarity=0.239 Sum_probs=38.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHHhcc
Q 009049 355 RYDLIDLTRQALAKYANELFLNIIEAYQLN---DAHGVFQLSRRFLELVEDMDGLLAC 409 (545)
Q Consensus 355 ~yDLvDvtRQvL~n~a~~~~~~~~~Ay~~~---d~~~~~~~~~~fl~li~dlD~LL~t 409 (545)
+-+|-|+.||+=+-..+ ..++..||+.. |.+.|...-..|=..+.++|.||.+
T Consensus 73 r~~l~~il~sIg~la~N--in~i~~Aa~~~~~pd~e~f~aER~~fGk~fA~ld~lLr~ 128 (147)
T PF07328_consen 73 RQKLEDILRSIGGLATN--INQILKAANRTPRPDYEAFRAERKAFGKEFADLDALLRS 128 (147)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777765443322 34677788744 6788999999999999999998864
No 15
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=20.93 E-value=3.4e+02 Score=24.62 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=28.7
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCChH
Q 009049 379 EAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLG 416 (545)
Q Consensus 379 ~Ay~~~d~~~~~~~~~~fl~li~dlD~LL~t~~~FlLg 416 (545)
..+...+.+.++....++.+.++.+|..|+.+ .|++|
T Consensus 25 ~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~-~yl~G 61 (142)
T cd03190 25 KAGFATTQEAYDEAVDELFEALDRLEELLSDR-RYLLG 61 (142)
T ss_pred HHhhccCHHHHHHHHHHHHHHHHHHHHHHccC-CeeeC
Confidence 34446777788888899999999999999765 45555
Done!