BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009050
(545 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
Remodelling
Length = 550
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/379 (54%), Positives = 270/379 (71%), Gaps = 4/379 (1%)
Query: 164 LKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYP 223
LK LY KL PLE YRF F SP L ++DFD KPMV++ GQYSTGKT+FI++LL P
Sbjct: 32 LKELYRTKLLPLEEHYRFGSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91
Query: 224 GAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHS 283
G+ +GPEPTTD FV VM G + ++PGN + V + PF L FG FL++F C+Q+P+
Sbjct: 92 GSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQ 151
Query: 284 LLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVI 343
+LE I+++DTPG+LSG KQR R YDF V WFA + DLI+LLFD HKL+ISDEF I
Sbjct: 152 VLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAI 211
Query: 344 TSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403
+LRGH+DKIRVVLNKAD V+TQQLMRVYGALMW+LGKV+ TPEV+RVYIGSF +P+
Sbjct: 212 GALRGHEDKIRVVLNKADMVETQQLMRVYGALMWALGKVVGTPEVLRVYIGSFWSQPL-- 269
Query: 404 SAFGPLGKELFEKEQDDLLSDLKDIPKKACDRRINEFVKRARAAKIHAYIISHLRKEMPA 463
P + LFE E+ DL D++ +P+ A R++N+ VKRAR ++HAYIIS+L+KEMP
Sbjct: 270 --LVPDNRRLFELEEQDLFRDIQGLPRHAALRKLNDLVKRARLVRVHAYIISYLKKEMPT 327
Query: 464 MMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQ 523
+ GK +++LI L F K+Q E H+ PGDFP+ + +E+L + F KF LKPK+++
Sbjct: 328 VFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPDCQKMQELLMAHDFTKFHSLKPKLLE 387
Query: 524 VVDDMLGYDIPDLLKNFRN 542
+DDML DI L+ R
Sbjct: 388 ALDDMLAQDIAKLMPLLRQ 406
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGY 70
+KD K ++N A +DG +++G+ A + + L L ++W ++D R G L
Sbjct: 453 VTKDKSKYDEIFYNLAPADG--KLSGSKAKTWMVGTKLPNSVLGRIWKLSDVDRDGMLDD 510
Query: 71 REFIAAMQLISLVQDGHQVTHDL 93
EF A LI +GH + +L
Sbjct: 511 EEFALASHLIEAKLEGHGLPTNL 533
>pdb|2KFF|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 With
Fnyestnpftak
pdb|2KFG|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 In Complex
With Fnyestdpftak
pdb|2KFH|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 With
Fnyestgpftak
pdb|2KSP|A Chain A, Mechanism For The Selective Interaction Of C-Terminal
Eh-Dom Proteins With Specific Npf-Containing Partners
Length = 105
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 6 GPIGS------CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAI 59
GP+GS KD + Y E F Y S +G+ITG +A K S L L ++W +
Sbjct: 1 GPLGSDDVEWVVGKD-KPTYDEIF-YTLSPVNGKITGANAKKEMVKSKLPNTVLGKIWKL 58
Query: 60 ADAKRQGYLGYREFIAAMQLISLVQDGHQVTHDL 93
AD + G L EF A LI + +GH++ DL
Sbjct: 59 ADVDKDGLLDDEEFALANHLIKVKLEGHELPADL 92
>pdb|2KHN|A Chain A, Nmr Solution Structure Of The Eh 1 Domain From Human
Intersectin-1 Protein. Northeast Structural Genomics
Consortium Target Hr3646e
Length = 121
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 31 DGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQVT 90
G ITG+ A FF S L + L Q+WA+AD G + EF AM+LI L G+Q+
Sbjct: 46 SGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLKLQGYQLP 105
Query: 91 HDL 93
L
Sbjct: 106 SAL 108
>pdb|1QJT|A Chain A, Solution Structure Of The Apo Eh1 Domain Of Mouse
Epidermal Growth Factor Receptor Substrate 15, Eps15
Length = 99
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 18 IYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAM 77
+Y +++ ++ GR+ DA F S L L ++W +AD +G L +EF A+
Sbjct: 12 VYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVAL 71
Query: 78 QLISLVQDGHQV 89
+L++ Q+G +V
Sbjct: 72 RLVACAQNGLEV 83
>pdb|2KGR|A Chain A, Solution Structure Of Protein Itsn1 From Homo Sapiens.
Northeast Structural Genomics Consortium Target Hr5524a
Length = 111
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%)
Query: 19 YLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
Y + FN D G +TG A S+L + L +W ++D + G L EFI AM
Sbjct: 16 YRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMH 75
Query: 79 LISLVQDGH 87
LI + G
Sbjct: 76 LIDVAMSGQ 84
>pdb|2JQ6|A Chain A, Structure Of Eh-Domain Of Ehd1
Length = 139
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 19 YLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
Y E F Y S +G+ITG +A K S L L ++W +AD + G L EF A
Sbjct: 53 YDEIF-YTLSPVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANH 111
Query: 79 LISLVQDGHQVTHDL 93
LI + +GH++ DL
Sbjct: 112 LIKVKLEGHELPADL 126
>pdb|1FI6|A Chain A, Solution Structure Of The Reps1 Eh Domain
Length = 92
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYR 71
+ + ++ Y+ F D +G I G+ A +FF S L +L +W ++D + G L
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLD 63
Query: 72 EFIAAMQLISLVQDGHQVTHDL 93
EF AA L+ ++G+ + L
Sbjct: 64 EFCAAFHLVVARKNGYDLPEKL 85
>pdb|3FIA|A Chain A, Crystal Structure Of The Eh 1 Domain From Human
Intersectin- 1 Protein. Northeast Structural Genomics
Consortium Target Hr3646e
Length = 121
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 32 GRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQVTH 91
G ITG+ A FF S L + L Q+WA+AD G EF A +LI L G+Q+
Sbjct: 47 GFITGDQARNFFFQSGLPQPVLAQIWALADXNNDGRXDQVEFSIAXKLIKLKLQGYQLPS 106
Query: 92 DL 93
L
Sbjct: 107 AL 108
>pdb|1IQ3|A Chain A, Solution Structure Of The Eps15 Homology Domain Of A
Human Pob1
Length = 110
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYR 71
+++ ++ Y+ F D I+G+ A FF S LS +L +W ++DA G L
Sbjct: 17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLP 76
Query: 72 EFIAAMQLISLVQDGHQVTHDL 93
EF AA LI ++G+ + L
Sbjct: 77 EFCAAFHLIVARKNGYPLPEGL 98
>pdb|1C07|A Chain A, Structure Of The Third Eps15 Homology Domain Of Human
Eps15
Length = 95
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 19 YLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
Y E F D D DG ++G + + F + L L +W++ D K G L +F A
Sbjct: 12 YDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFH 71
Query: 79 LIS 81
LIS
Sbjct: 72 LIS 74
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 20 LEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79
L F DSDG G+IT + + F ++ + + QV D G + + EF+ MQ
Sbjct: 400 LAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQK 459
Query: 80 ISLVQDGH 87
I V+ H
Sbjct: 460 ICDVKVKH 467
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 20 LEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79
L F DSDG G+IT + + F ++ + + QV D G + + EF+ MQ
Sbjct: 126 LAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQK 185
Query: 80 ISLVQ 84
I V+
Sbjct: 186 ICDVK 190
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLIS 81
FN D+D G+IT + F L+++S + V AD + + + EF++ M I
Sbjct: 441 FNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKIC 499
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1
With Calcium Bound
Length = 198
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 32 GRITGNDATKFFALSNLS---RQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80
G++T + +FF L NLS + ++Q++ D + GY+ + E++AA+ L+
Sbjct: 30 GQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLV 81
>pdb|2OCP|A Chain A, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|B Chain B, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|C Chain C, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|D Chain D, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|E Chain E, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|F Chain F, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|G Chain G, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|H Chain H, Crystal Structure Of Human Deoxyguanosine Kinase
Length = 241
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 204 GQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADM---- 259
G + GK+TF+K LL +YP H+ EP + +G + ++ ++ DM
Sbjct: 9 GNIAVGKSTFVK-LLTKTYPEWHVATEPVATWQNIQAAG-NQKACTAQSLGNLLDMMYRE 66
Query: 260 PFSGLTTFGT-AFLSKFECSQMP 281
P TF T +FLS+ + P
Sbjct: 67 PARWSYTFQTFSFLSRLKVQLEP 89
>pdb|2I18|A Chain A, The Refined Structure Of C-Terminal Domain Of An Ef-Hand
Calcium Binding Protein From Entamoeba Histolytica
Length = 64
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 23 FNYADSDGDGRITGNDATKFF---ALSNLSRQDLKQVWAIADAKRQGYLGYREFI 74
+ D DGDG++T + T FF + ++ Q +K ADA GY+ EF+
Sbjct: 11 YKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMK-----ADANGDGYITLEEFL 60
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 23 FNYADSDGDGRITGNDATKFF---ALSNLSRQDLKQVWAIADAKRQGYLGYREFI 74
+ D DGDG++T + T FF + ++ Q +K ADA GY+ EF+
Sbjct: 81 YKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMK-----ADANGDGYITLEEFL 130
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 23 FNYADSDGDGRITGNDATKFF---ALSNLSRQDLKQVWAIADAKRQGYLGYREFI 74
+ D DGDG++T + T FF + ++ Q +K ADA GY+ EF+
Sbjct: 81 YKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMK-----ADANGDGYITLEEFL 130
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
F D DG+G+I+ ++ F L +L + K++ + D+ G + + EF +Q
Sbjct: 432 FQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQ 487
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 27 DSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIA 75
D+DGDG++T + T FF + + Q+ ADA GY+ EF+A
Sbjct: 85 DADGDGKLTKEEVTTFFKKFGYEKV-VDQIMK-ADANGDGYITLEEFLA 131
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 23 FNYADSDGDGRITGNDATKFF--ALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
F D DG G+I+ + K F A S++ ++L+ + D + G + + EF+ +Q
Sbjct: 423 FKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQ 480
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 21 EWFNYADSDGDGRITGNDATKFFAL--SNLSRQDLKQVWAIADAKRQGYLGYREFIAA 76
E FN D+D G+IT + +NL ++ + AD G + Y+EFIAA
Sbjct: 31 EXFNXIDADKSGQITFEELKAGLKRVGANLKESEILDLXQAADVDNSGTIDYKEFIAA 88
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
F D DG+G+I+ ++ F L +L + K++ + D+ G + + EF +Q
Sbjct: 149 FQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQ 204
>pdb|1OQP|A Chain A, Structure Of The Ca2+C-Terminal Domain Of Caltractin In
Complex With The Cdc31p-Binding Domain From Kar1p
Length = 77
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFAL--SNLSRQDLKQVWAIADAKRQG 66
GS +D ++ L+ F D D G IT D + NL+ ++L+++ A AD
Sbjct: 1 GSGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDN 60
Query: 67 YLGYREFIAAMQLISL 82
+ EFI M+ SL
Sbjct: 61 EIDEDEFIRIMKKTSL 76
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 21 EWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78
E F DS GDGR+ N+ S +S Q + + D +R+G LG+ +++
Sbjct: 97 EGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSI 156
Query: 79 LISLVQD 85
+ V++
Sbjct: 157 FVCRVRN 163
>pdb|4EU9|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EU9|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EUA|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
pdb|4EUA|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
Length = 514
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 428 IPKKACDRRINEFVKRARAAKIHAYIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQK 487
+P D+R+ V R KI A + ++ R E +T + + L + FG K
Sbjct: 196 VPIVRADQRVGGPVLRVNPDKIAAIVRTNDRDENAPFAAPDETAKAIAGYLLDFFGHEVK 255
Query: 488 EFHLPPGDFP------NVEHFKEILSGYSFDKFEKLKPKMIQVVDDML 529
+ LPP P NV + +L G FE L + D ML
Sbjct: 256 QNRLPPSLLPLQSGVGNVAN--AVLEGLKEGPFENLVGYSEVIQDGML 301
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREF 73
F DSD G+I+ + F +S++ + K V + D G + + EF
Sbjct: 424 FRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEF 474
>pdb|3AHC|A Chain A, Resting Form Of Phosphoketolase From Bifidobacterium Breve
pdb|3AHD|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
2-Acetyl- Thiamine Diphosphate
pdb|3AHE|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Dihydroxyethyl Thiamine Diphosphate
pdb|3AHF|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Inorganic Phosphate
Length = 845
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 349 HDDKIRVVLNKADQVDTQQLMRVYGAL--MWSLGKVLNTPEVVRVYIGSFNDKPVNESAF 406
++D+++VVL A V TQ+LM AL M KV+N +++++ ND+ + + F
Sbjct: 656 NNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEF 715
Query: 407 GPLGKELFEKEQDDLLS 423
ELF ++ L +
Sbjct: 716 ----TELFTADKPVLFA 728
>pdb|3AHJ|A Chain A, H553a Mutant Of Phosphoketolase From Bifidobacterium Breve
Length = 845
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 349 HDDKIRVVLNKADQVDTQQLMRVYGAL--MWSLGKVLNTPEVVRVYIGSFNDKPVNESAF 406
++D+++VVL A V TQ+LM AL M KV+N +++++ ND+ + + F
Sbjct: 656 NNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEF 715
Query: 407 GPLGKELFEKEQDDLLS 423
ELF ++ L +
Sbjct: 716 ----TELFTADKPVLFA 728
>pdb|3AHI|A Chain A, H320a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 349 HDDKIRVVLNKADQVDTQQLMRVYGAL--MWSLGKVLNTPEVVRVYIGSFNDKPVNESAF 406
++D+++VVL A V TQ+LM AL M KV+N +++++ ND+ + + F
Sbjct: 656 NNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEF 715
Query: 407 GPLGKELFEKEQDDLLS 423
ELF ++ L +
Sbjct: 716 ----TELFTADKPVLFA 728
>pdb|3AHH|A Chain A, H142a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 349 HDDKIRVVLNKADQVDTQQLMRVYGAL--MWSLGKVLNTPEVVRVYIGSFNDKPVNESAF 406
++D+++VVL A V TQ+LM AL M KV+N +++++ ND+ + + F
Sbjct: 656 NNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEF 715
Query: 407 GPLGKELFEKEQDDLLS 423
ELF ++ L +
Sbjct: 716 ----TELFTADKPVLFA 728
>pdb|3AHG|A Chain A, H64a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With A Tricyclic Ring Form Of Thiamine
Diphosphate
Length = 845
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 349 HDDKIRVVLNKADQVDTQQLMRVYGAL--MWSLGKVLNTPEVVRVYIGSFNDKPVNESAF 406
++D+++VVL A V TQ+LM AL M KV+N +++++ ND+ + + F
Sbjct: 656 NNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEF 715
Query: 407 GPLGKELFEKEQDDLLS 423
ELF ++ L +
Sbjct: 716 ----TELFTADKPVLFA 728
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 62/171 (36%), Gaps = 46/171 (26%)
Query: 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA 257
P+V +LG GKTT + H+ S V R G T + A
Sbjct: 6 PIVSVLGHVDHGKTTLLDHIR---------------------GSAVASREAGGITQHIGA 44
Query: 258 -DMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSW 316
++P + FL KF + L +DTPG + FT +
Sbjct: 45 TEIPXDVIEGICGDFLKKFSIRETLPGLF----FIDTPGHEA-----------FTTLRKR 89
Query: 317 FAAKCDLILLLFDPHKLDISDEFK----RVITSLRGHDDKIRVVLNKADQV 363
A DL +L+ +DI++ FK + LR + V NK D++
Sbjct: 90 GGALADLAILI-----VDINEGFKPQTQEALNILRXYRTPFVVAANKIDRI 135
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREF 73
F DSD G+I+ + F +S++ + K V + D G + + EF
Sbjct: 447 FRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEF 497
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREF 73
F DSD G+I+ + F +S++ + K V + D G + + EF
Sbjct: 448 FRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEF 498
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 23 FNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREF 73
F DSD G+I+ + F +S++ + K V + D G + + EF
Sbjct: 424 FRXFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEF 474
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 62/171 (36%), Gaps = 46/171 (26%)
Query: 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA 257
P+V +LG GKTT + H+ S V R G T + A
Sbjct: 6 PIVSVLGHVDHGKTTLLDHIRG---------------------SAVASREAGGITQHIGA 44
Query: 258 -DMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSW 316
++P + FL KF + L + +DTPG FT +
Sbjct: 45 TEIPMDVIEGICGDFLKKFSIRET----LPGLFFIDTPG-----------HEAFTTLRKR 89
Query: 317 FAAKCDLILLLFDPHKLDISDEFK----RVITSLRGHDDKIRVVLNKADQV 363
A DL +L+ +DI++ FK + LR + V NK D++
Sbjct: 90 GGALADLAILI-----VDINEGFKPQTQEALNILRMYRTPFVVAANKIDRI 135
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo
Form
Length = 190
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 56 VWAIADAKRQGYLGYREFIAAMQLIS 81
V+ + DA + GY+ ++EFI A+ + S
Sbjct: 68 VFNVFDADKNGYIDFKEFICALSVTS 93
>pdb|4EUB|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUB|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUC|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
pdb|4EUC|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
Length = 514
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
Query: 428 IPKKACDRRINEFVKRARAAKIHAYIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQK 487
+P D+R+ V R KI A + ++ R +T + + L + FG K
Sbjct: 196 VPIVRADQRVGGPVLRVNPDKIAAIVRTNDRDRNAPFAAPDETAKAIAGYLLDFFGHEVK 255
Query: 488 EFHLPPGDFP------NVEHFKEILSGYSFDKFEKLKPKMIQVVDDML 529
+ LPP P NV + +L G FE L + D ML
Sbjct: 256 QNRLPPSLLPLQSGVGNVAN--AVLEGLKEGPFENLVGYSAVIQDGML 301
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 23 FNYADSDGDGRITGNDATKFF-ALSNLSRQDLKQVWAIADAKRQGYLGYREFIA 75
F D++GDG+I+ ++ T L + S +++++ A D G++ + EFI+
Sbjct: 9 FKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFIS 62
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 23 FNYADSDGDGRITGNDATKFF-ALSNLSRQDLKQVWAIADAKRQGYLGYREFIA 75
F D++GDG+I+ ++ T L + S +++++ A D G++ + EFI+
Sbjct: 8 FKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFIS 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,796,596
Number of Sequences: 62578
Number of extensions: 716189
Number of successful extensions: 2112
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2072
Number of HSP's gapped (non-prelim): 79
length of query: 545
length of database: 14,973,337
effective HSP length: 104
effective length of query: 441
effective length of database: 8,465,225
effective search space: 3733164225
effective search space used: 3733164225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)