Query 009050
Match_columns 545
No_of_seqs 617 out of 5403
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 19:48:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1954 Endocytosis/signaling 100.0 3.6E-86 7.9E-91 648.0 35.5 388 153-544 14-401 (532)
2 COG1159 Era GTPase [General fu 100.0 2.3E-38 4.9E-43 308.8 0.1 228 199-477 8-257 (298)
3 TIGR00436 era GTP-binding prot 100.0 1E-31 2.2E-36 269.9 -0.0 227 199-477 2-249 (270)
4 PRK00089 era GTPase Era; Revie 100.0 1.2E-30 2.5E-35 265.3 1.7 228 198-477 6-254 (292)
5 COG0486 ThdF Predicted GTPase 100.0 3E-30 6.5E-35 265.7 4.6 262 73-403 89-366 (454)
6 PRK15494 era GTPase Era; Provi 100.0 1.4E-30 3.1E-35 269.0 -0.9 227 199-477 54-301 (339)
7 KOG1423 Ras-like GTPase ERA [C 99.9 2.9E-28 6.2E-33 236.0 0.5 234 199-477 74-356 (379)
8 PF12763 EF-hand_4: Cytoskelet 99.9 1E-24 2.2E-29 184.7 7.7 95 9-110 2-98 (104)
9 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.1E-25 2.3E-30 239.6 -2.9 247 33-365 64-325 (442)
10 PRK05291 trmE tRNA modificatio 99.9 1.9E-25 4E-30 239.0 -2.1 275 33-403 72-360 (449)
11 KOG1191 Mitochondrial GTPase [ 99.8 7E-22 1.5E-26 203.1 4.2 236 75-365 139-404 (531)
12 COG1160 Predicted GTPases [Gen 99.8 9.2E-20 2E-24 187.9 12.1 152 198-403 4-155 (444)
13 PF02421 FeoB_N: Ferrous iron 99.8 7.3E-21 1.6E-25 173.4 3.3 144 199-403 2-151 (156)
14 COG1160 Predicted GTPases [Gen 99.8 7.1E-19 1.5E-23 181.4 15.2 160 197-403 178-341 (444)
15 KOG1029 Endocytic adaptor prot 99.8 1.8E-19 3.9E-24 190.5 10.5 93 4-97 3-95 (1118)
16 PRK12298 obgE GTPase CgtA; Rev 99.8 2.5E-18 5.4E-23 180.3 10.7 169 198-417 160-342 (390)
17 KOG1955 Ral-GTPase effector RA 99.8 1.4E-18 3.1E-23 176.2 8.3 98 5-103 219-316 (737)
18 KOG1029 Endocytic adaptor prot 99.7 2.1E-18 4.7E-23 182.5 7.1 102 6-113 184-285 (1118)
19 COG0370 FeoB Fe2+ transport sy 99.7 1.3E-16 2.9E-21 171.6 13.2 143 199-403 5-154 (653)
20 TIGR03598 GTPase_YsxC ribosome 99.7 1.6E-15 3.5E-20 142.8 18.4 160 195-402 16-179 (179)
21 PRK09866 hypothetical protein; 99.7 1.9E-15 4.1E-20 161.9 18.9 110 285-403 229-343 (741)
22 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.3E-15 2.8E-20 147.1 14.7 189 199-429 1-205 (208)
23 cd01898 Obg Obg subfamily. Th 99.7 7.7E-16 1.7E-20 143.0 12.5 154 199-403 2-161 (170)
24 COG1126 GlnQ ABC-type polar am 99.7 2.2E-16 4.8E-21 147.8 7.9 168 177-361 8-197 (240)
25 PRK00093 GTP-binding protein D 99.6 4.5E-15 9.9E-20 159.4 18.5 160 197-403 173-334 (435)
26 PRK03003 GTP-binding protein D 99.6 3E-15 6.5E-20 162.0 17.1 159 198-403 212-372 (472)
27 PRK12299 obgE GTPase CgtA; Rev 99.6 1.1E-15 2.4E-20 157.3 13.0 154 198-403 159-318 (335)
28 cd04163 Era Era subfamily. Er 99.6 3.4E-15 7.5E-20 136.9 14.1 155 198-403 4-159 (168)
29 COG0218 Predicted GTPase [Gene 99.6 8.5E-15 1.8E-19 136.6 16.3 161 191-403 18-187 (200)
30 PF01926 MMR_HSR1: 50S ribosom 99.6 1.7E-15 3.7E-20 132.2 10.8 116 199-359 1-116 (116)
31 TIGR02729 Obg_CgtA Obg family 99.6 3.2E-15 7E-20 153.7 13.7 154 198-403 158-319 (329)
32 PRK03003 GTP-binding protein D 99.6 4.4E-15 9.4E-20 160.7 15.2 153 196-403 37-189 (472)
33 PRK09554 feoB ferrous iron tra 99.6 9.1E-15 2E-19 165.1 18.0 153 198-403 4-158 (772)
34 TIGR03594 GTPase_EngA ribosome 99.6 1.1E-14 2.3E-19 156.2 17.7 159 198-403 173-334 (429)
35 PRK09518 bifunctional cytidyla 99.6 1.2E-14 2.5E-19 164.6 18.1 159 198-403 451-611 (712)
36 PRK12296 obgE GTPase CgtA; Rev 99.6 4.1E-15 8.9E-20 158.9 13.4 153 198-403 160-330 (500)
37 COG1084 Predicted GTPase [Gene 99.6 9.1E-15 2E-19 144.7 14.5 153 197-403 168-326 (346)
38 cd00881 GTP_translation_factor 99.6 7.1E-15 1.5E-19 138.5 13.2 166 199-403 1-177 (189)
39 TIGR03156 GTP_HflX GTP-binding 99.6 3.1E-15 6.6E-20 155.3 11.6 148 198-403 190-342 (351)
40 cd01895 EngA2 EngA2 subfamily. 99.6 1.4E-14 3E-19 134.1 14.7 159 198-403 3-165 (174)
41 cd01897 NOG NOG1 is a nucleola 99.6 7.6E-15 1.6E-19 136.1 12.6 154 198-403 1-158 (168)
42 PF00350 Dynamin_N: Dynamin fa 99.6 4.3E-15 9.2E-20 138.1 10.5 152 200-360 1-168 (168)
43 cd04171 SelB SelB subfamily. 99.6 1.5E-14 3.3E-19 133.1 14.0 153 199-403 2-156 (164)
44 TIGR03594 GTPase_EngA ribosome 99.6 5.7E-15 1.2E-19 158.3 12.7 150 199-403 1-150 (429)
45 cd01894 EngA1 EngA1 subfamily. 99.6 5.8E-15 1.3E-19 134.7 10.7 148 201-403 1-148 (157)
46 cd01884 EF_Tu EF-Tu subfamily. 99.6 1.6E-14 3.5E-19 137.9 14.1 166 199-403 4-173 (195)
47 PF00009 GTP_EFTU: Elongation 99.6 1.6E-15 3.4E-20 144.2 6.3 170 199-403 5-177 (188)
48 COG1116 TauB ABC-type nitrate/ 99.6 3.9E-15 8.4E-20 143.3 8.5 167 177-361 9-192 (248)
49 COG1121 ZnuC ABC-type Mn/Zn tr 99.6 5E-15 1.1E-19 144.3 9.0 171 177-361 10-200 (254)
50 PRK12297 obgE GTPase CgtA; Rev 99.6 1.3E-14 2.9E-19 153.1 12.5 150 198-403 159-317 (424)
51 PRK09518 bifunctional cytidyla 99.6 2E-14 4.4E-19 162.7 14.1 151 198-403 276-426 (712)
52 PRK00093 GTP-binding protein D 99.6 2.5E-14 5.4E-19 153.6 14.0 151 198-403 2-152 (435)
53 cd04164 trmE TrmE (MnmE, ThdF, 99.6 3.5E-14 7.5E-19 129.4 12.4 146 198-403 2-147 (157)
54 PRK00454 engB GTP-binding prot 99.6 1.3E-13 2.8E-18 131.3 16.9 154 196-403 23-184 (196)
55 PRK04213 GTP-binding protein; 99.6 7.3E-14 1.6E-18 133.9 15.1 151 198-403 10-182 (201)
56 cd01878 HflX HflX subfamily. 99.5 3.5E-14 7.5E-19 136.5 12.0 152 197-403 41-195 (204)
57 PRK11058 GTPase HflX; Provisio 99.5 2.8E-14 6.1E-19 151.5 12.3 151 198-403 198-352 (426)
58 cd01879 FeoB Ferrous iron tran 99.5 2.5E-14 5.4E-19 130.9 10.2 145 202-403 1-147 (158)
59 COG2884 FtsE Predicted ATPase 99.5 8.3E-15 1.8E-19 134.4 6.7 167 178-361 8-198 (223)
60 cd01891 TypA_BipA TypA (tyrosi 99.5 1.5E-13 3.2E-18 131.2 15.7 105 287-403 66-172 (194)
61 cd04154 Arl2 Arl2 subfamily. 99.5 9.1E-14 2E-18 129.9 13.3 147 198-403 15-165 (173)
62 cd01886 EF-G Elongation factor 99.5 5.4E-14 1.2E-18 140.9 12.4 158 200-398 2-160 (270)
63 cd01881 Obg_like The Obg-like 99.5 3.7E-14 8E-19 132.2 10.3 151 202-403 1-167 (176)
64 cd04156 ARLTS1 ARLTS1 subfamil 99.5 1.1E-13 2.4E-18 127.2 13.0 148 199-403 1-152 (160)
65 cd04160 Arfrp1 Arfrp1 subfamil 99.5 9.8E-14 2.1E-18 128.5 12.7 105 287-403 51-159 (167)
66 smart00027 EH Eps15 homology d 99.5 9.1E-14 2E-18 117.3 11.3 88 8-95 1-88 (96)
67 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 1.6E-13 3.5E-18 126.9 14.1 154 198-403 1-156 (168)
68 cd01889 SelB_euk SelB subfamil 99.5 9E-14 2E-18 132.5 12.7 105 287-403 69-176 (192)
69 cd04159 Arl10_like Arl10-like 99.5 1.8E-13 3.8E-18 124.6 13.6 146 200-403 2-151 (159)
70 cd04157 Arl6 Arl6 subfamily. 99.5 1.5E-13 3.2E-18 126.4 13.1 148 199-403 1-154 (162)
71 cd04140 ARHI_like ARHI subfami 99.5 1E-13 2.2E-18 128.5 11.1 147 199-403 3-155 (165)
72 cd04151 Arl1 Arl1 subfamily. 99.5 2.1E-13 4.7E-18 125.3 13.1 145 199-403 1-150 (158)
73 cd00878 Arf_Arl Arf (ADP-ribos 99.5 2.8E-13 6.1E-18 124.3 13.7 145 199-403 1-150 (158)
74 KOG1489 Predicted GTP-binding 99.5 5.7E-14 1.2E-18 137.9 9.4 154 197-403 196-357 (366)
75 COG2262 HflX GTPases [General 99.5 1.3E-13 2.8E-18 140.7 11.7 150 198-403 193-346 (411)
76 cd01861 Rab6 Rab6 subfamily. 99.5 4.4E-13 9.6E-18 123.2 14.2 147 199-403 2-152 (161)
77 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 3.3E-13 7.1E-18 126.5 13.5 146 198-403 16-166 (174)
78 COG0536 Obg Predicted GTPase [ 99.5 1E-13 2.2E-18 137.8 10.3 154 199-403 161-323 (369)
79 cd04138 H_N_K_Ras_like H-Ras/N 99.5 3.7E-13 8E-18 123.4 13.4 146 199-403 3-152 (162)
80 COG1136 SalX ABC-type antimicr 99.5 3.5E-14 7.7E-19 136.4 6.8 170 172-359 4-202 (226)
81 smart00178 SAR Sar1p-like memb 99.5 2.6E-13 5.7E-18 128.4 12.7 146 197-403 17-175 (184)
82 cd01890 LepA LepA subfamily. 99.5 2.1E-13 4.6E-18 127.8 12.0 100 287-403 68-167 (179)
83 cd04149 Arf6 Arf6 subfamily. 99.5 4E-13 8.6E-18 125.3 13.6 147 198-403 10-160 (168)
84 COG0411 LivG ABC-type branched 99.5 1.2E-14 2.5E-19 139.0 3.3 172 177-363 10-213 (250)
85 cd00879 Sar1 Sar1 subfamily. 99.5 3.6E-13 7.7E-18 127.8 13.5 148 198-403 20-181 (190)
86 cd00154 Rab Rab family. Rab G 99.5 4.3E-13 9.3E-18 121.9 13.3 147 199-403 2-152 (159)
87 cd04136 Rap_like Rap-like subf 99.5 3.3E-13 7.1E-18 124.2 12.6 147 198-403 2-153 (163)
88 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 5.3E-13 1.1E-17 123.6 13.9 147 199-403 4-154 (166)
89 cd01883 EF1_alpha Eukaryotic e 99.5 1.5E-13 3.2E-18 133.9 10.6 168 200-403 2-195 (219)
90 cd04104 p47_IIGP_like p47 (47- 99.5 1.4E-12 3E-17 124.9 17.1 117 199-364 3-121 (197)
91 cd01876 YihA_EngB The YihA (En 99.5 7.5E-13 1.6E-17 121.7 14.4 152 200-403 2-161 (170)
92 smart00173 RAS Ras subfamily o 99.5 4.2E-13 9.1E-18 123.8 12.6 146 199-403 2-152 (164)
93 cd04124 RabL2 RabL2 subfamily. 99.5 6.4E-13 1.4E-17 122.7 13.8 145 199-403 2-148 (161)
94 cd04119 RJL RJL (RabJ-Like) su 99.5 6.7E-13 1.5E-17 122.4 14.0 147 199-403 2-157 (168)
95 cd01864 Rab19 Rab19 subfamily. 99.5 2.7E-13 5.9E-18 125.5 11.3 148 198-403 4-156 (165)
96 cd04142 RRP22 RRP22 subfamily. 99.5 7.9E-13 1.7E-17 126.7 14.8 156 199-403 2-164 (198)
97 cd01867 Rab8_Rab10_Rab13_like 99.5 1.2E-12 2.7E-17 121.5 15.7 148 198-403 4-155 (167)
98 cd04161 Arl2l1_Arl13_like Arl2 99.5 3.9E-13 8.4E-18 125.1 12.2 147 199-403 1-159 (167)
99 cd01868 Rab11_like Rab11-like. 99.5 8.3E-13 1.8E-17 122.1 14.2 147 199-403 5-155 (165)
100 cd01866 Rab2 Rab2 subfamily. 99.5 8.1E-13 1.8E-17 122.9 14.1 146 198-403 5-156 (168)
101 cd01862 Rab7 Rab7 subfamily. 99.5 8.3E-13 1.8E-17 122.7 14.1 148 199-403 2-157 (172)
102 cd00880 Era_like Era (E. coli 99.5 9.8E-13 2.1E-17 119.0 14.2 154 202-403 1-154 (163)
103 cd04150 Arf1_5_like Arf1-Arf5- 99.5 7.6E-13 1.6E-17 122.1 13.5 146 199-403 2-151 (159)
104 CHL00071 tufA elongation facto 99.5 5.9E-13 1.3E-17 141.5 14.4 167 199-403 14-183 (409)
105 cd04127 Rab27A Rab27a subfamil 99.5 1.8E-12 3.9E-17 121.7 15.8 99 287-403 64-167 (180)
106 cd04145 M_R_Ras_like M-Ras/R-R 99.5 4.2E-13 9.1E-18 123.6 11.3 146 199-403 4-154 (164)
107 cd04165 GTPBP1_like GTPBP1-lik 99.5 9.4E-13 2E-17 128.5 14.3 106 286-403 84-213 (224)
108 PRK05506 bifunctional sulfate 99.5 4E-13 8.6E-18 150.5 13.4 178 199-415 26-221 (632)
109 cd01860 Rab5_related Rab5-rela 99.5 1.1E-12 2.4E-17 120.8 14.1 146 199-403 3-153 (163)
110 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 1.4E-12 2.9E-17 125.3 15.2 148 199-403 2-158 (201)
111 cd04112 Rab26 Rab26 subfamily. 99.5 9.6E-13 2.1E-17 125.3 13.9 148 199-403 2-153 (191)
112 cd04155 Arl3 Arl3 subfamily. 99.5 8.5E-13 1.8E-17 123.0 13.3 148 197-403 14-165 (173)
113 PRK12317 elongation factor 1-a 99.5 4.8E-13 1E-17 143.2 13.0 169 199-403 8-195 (425)
114 smart00175 RAB Rab subfamily o 99.4 5.5E-13 1.2E-17 122.7 11.6 147 199-403 2-152 (164)
115 TIGR02528 EutP ethanolamine ut 99.4 3.4E-13 7.3E-18 121.7 9.9 134 199-403 2-135 (142)
116 COG3638 ABC-type phosphate/pho 99.4 4.8E-14 1E-18 133.9 4.1 172 180-363 12-211 (258)
117 COG1117 PstB ABC-type phosphat 99.4 2E-13 4.3E-18 127.6 8.2 164 177-372 13-215 (253)
118 cd04144 Ras2 Ras2 subfamily. 99.4 2.1E-12 4.5E-17 122.9 15.4 146 199-403 1-153 (190)
119 cd01863 Rab18 Rab18 subfamily. 99.4 1.6E-12 3.4E-17 119.6 14.1 146 199-403 2-152 (161)
120 cd04113 Rab4 Rab4 subfamily. 99.4 8.8E-13 1.9E-17 121.4 12.4 147 199-403 2-152 (161)
121 cd01865 Rab3 Rab3 subfamily. 99.4 1.2E-12 2.6E-17 121.3 13.4 146 199-403 3-153 (165)
122 cd04158 ARD1 ARD1 subfamily. 99.4 9.4E-13 2E-17 122.7 12.7 147 199-403 1-151 (169)
123 cd01893 Miro1 Miro1 subfamily. 99.4 6.6E-13 1.4E-17 123.2 11.6 147 199-403 2-154 (166)
124 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 1E-12 2.2E-17 122.0 12.6 142 200-398 2-145 (164)
125 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 1.5E-12 3.3E-17 123.1 14.0 153 198-403 4-160 (183)
126 cd04118 Rab24 Rab24 subfamily. 99.4 7.3E-13 1.6E-17 126.0 11.2 152 199-403 2-156 (193)
127 cd04122 Rab14 Rab14 subfamily. 99.4 9.1E-13 2E-17 122.2 11.5 147 199-403 4-154 (166)
128 cd01896 DRG The developmentall 99.4 1.4E-12 3E-17 128.2 13.4 88 199-332 2-89 (233)
129 cd01888 eIF2_gamma eIF2-gamma 99.4 2.1E-12 4.4E-17 124.4 14.2 106 286-403 83-189 (203)
130 cd04106 Rab23_lke Rab23-like s 99.4 2E-12 4.3E-17 119.0 13.5 149 199-403 2-153 (162)
131 COG1120 FepC ABC-type cobalami 99.4 5.9E-13 1.3E-17 130.5 10.4 168 177-361 8-200 (258)
132 smart00177 ARF ARF-like small 99.4 2.2E-12 4.7E-17 121.1 13.7 147 198-403 14-164 (175)
133 cd04175 Rap1 Rap1 subgroup. T 99.4 2.8E-12 6.1E-17 118.5 14.3 147 198-403 2-153 (164)
134 COG1135 AbcC ABC-type metal io 99.4 1.6E-13 3.6E-18 135.0 6.0 160 187-362 20-204 (339)
135 TIGR00437 feoB ferrous iron tr 99.4 4.6E-13 9.9E-18 148.0 10.2 143 204-403 1-145 (591)
136 cd04176 Rap2 Rap2 subgroup. T 99.4 8.1E-13 1.8E-17 121.9 10.3 146 199-403 3-153 (163)
137 cd04139 RalA_RalB RalA/RalB su 99.4 3.4E-12 7.3E-17 117.4 14.2 146 199-403 2-152 (164)
138 smart00174 RHO Rho (Ras homolo 99.4 9.8E-13 2.1E-17 122.7 10.6 150 200-403 1-162 (174)
139 PTZ00369 Ras-like protein; Pro 99.4 6.8E-12 1.5E-16 119.2 16.5 147 198-403 6-157 (189)
140 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 1.1E-12 2.4E-17 122.5 10.8 147 199-403 2-155 (170)
141 cd04101 RabL4 RabL4 (Rab-like4 99.4 1.3E-12 2.8E-17 120.5 11.1 99 287-403 53-154 (164)
142 PRK15467 ethanolamine utilizat 99.4 1.5E-12 3.2E-17 120.3 11.4 135 199-403 3-137 (158)
143 cd04114 Rab30 Rab30 subfamily. 99.4 2.3E-12 5E-17 119.5 12.8 149 198-403 8-159 (169)
144 PLN00223 ADP-ribosylation fact 99.4 2.6E-12 5.5E-17 121.4 13.2 147 198-403 18-168 (181)
145 cd04109 Rab28 Rab28 subfamily. 99.4 2.2E-12 4.9E-17 125.2 13.0 148 199-403 2-156 (215)
146 COG1163 DRG Predicted GTPase [ 99.4 8.2E-13 1.8E-17 130.4 9.9 88 199-332 65-152 (365)
147 cd04170 EF-G_bact Elongation f 99.4 1.1E-12 2.3E-17 131.8 10.9 99 287-403 65-163 (268)
148 PTZ00133 ADP-ribosylation fact 99.4 3.4E-12 7.4E-17 120.6 13.6 146 198-403 18-168 (182)
149 TIGR00475 selB selenocysteine- 99.4 2.6E-12 5.7E-17 141.9 14.5 153 199-403 2-156 (581)
150 cd04116 Rab9 Rab9 subfamily. 99.4 2.5E-12 5.5E-17 119.5 12.1 149 198-403 6-161 (170)
151 cd04147 Ras_dva Ras-dva subfam 99.4 1.9E-12 4.1E-17 124.0 11.3 148 199-403 1-153 (198)
152 cd04120 Rab12 Rab12 subfamily. 99.4 3E-12 6.5E-17 123.0 12.6 149 199-403 2-153 (202)
153 cd00157 Rho Rho (Ras homology) 99.4 1.3E-12 2.9E-17 121.1 9.6 151 199-403 2-163 (171)
154 PF10662 PduV-EutP: Ethanolami 99.4 2.1E-12 4.5E-17 115.5 10.3 131 199-403 3-136 (143)
155 PRK05124 cysN sulfate adenylyl 99.4 3.1E-12 6.7E-17 138.1 13.6 169 198-403 28-215 (474)
156 cd04123 Rab21 Rab21 subfamily. 99.4 5.9E-12 1.3E-16 115.4 13.6 147 199-403 2-152 (162)
157 TIGR02034 CysN sulfate adenyly 99.4 2.7E-12 5.8E-17 136.3 12.9 168 199-403 2-187 (406)
158 cd04168 TetM_like Tet(M)-like 99.4 2.9E-12 6.2E-17 126.2 11.9 144 200-381 2-146 (237)
159 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.4 7.4E-12 1.6E-16 117.1 14.2 147 199-403 4-154 (172)
160 cd04111 Rab39 Rab39 subfamily. 99.4 1.5E-11 3.2E-16 119.1 16.7 148 199-403 4-156 (211)
161 cd01892 Miro2 Miro2 subfamily. 99.4 3.2E-12 6.8E-17 119.3 11.3 149 199-403 6-156 (169)
162 TIGR00484 EF-G translation elo 99.4 2.1E-12 4.6E-17 146.0 11.9 159 199-398 12-171 (689)
163 cd04132 Rho4_like Rho4-like su 99.4 7.1E-12 1.5E-16 118.5 13.7 148 199-403 2-157 (187)
164 cd04125 RabA_like RabA-like su 99.4 1.6E-11 3.5E-16 116.4 16.0 147 199-403 2-152 (188)
165 PRK12736 elongation factor Tu; 99.4 7.5E-12 1.6E-16 132.5 15.1 163 199-399 14-179 (394)
166 cd04110 Rab35 Rab35 subfamily. 99.4 1.7E-11 3.7E-16 117.5 16.3 148 198-403 7-157 (199)
167 TIGR00491 aIF-2 translation in 99.4 7.4E-12 1.6E-16 137.6 15.5 131 197-364 4-135 (590)
168 cd04143 Rhes_like Rhes_like su 99.4 7.3E-12 1.6E-16 124.1 14.0 146 199-403 2-161 (247)
169 PLN03110 Rab GTPase; Provision 99.4 9.7E-12 2.1E-16 120.8 14.6 148 198-403 13-164 (216)
170 cd04117 Rab15 Rab15 subfamily. 99.4 7.4E-12 1.6E-16 115.7 12.9 148 199-403 2-152 (161)
171 cd04134 Rho3 Rho3 subfamily. 99.4 2.8E-12 6.1E-17 121.9 10.2 151 199-403 2-164 (189)
172 PLN03118 Rab family protein; P 99.4 5.4E-12 1.2E-16 122.1 12.2 148 197-403 14-167 (211)
173 PLN03127 Elongation factor Tu; 99.4 5.9E-12 1.3E-16 134.7 13.7 159 199-398 63-227 (447)
174 PLN03108 Rab family protein; P 99.4 2.1E-11 4.6E-16 117.9 16.4 148 198-403 7-158 (210)
175 cd04126 Rab20 Rab20 subfamily. 99.4 2.6E-11 5.7E-16 117.9 17.0 110 199-364 2-114 (220)
176 COG3839 MalK ABC-type sugar tr 99.4 1.2E-12 2.5E-17 133.3 7.5 163 177-358 9-192 (338)
177 cd01885 EF2 EF2 (for archaea a 99.4 8.2E-12 1.8E-16 121.5 13.1 133 199-363 2-138 (222)
178 cd04137 RheB Rheb (Ras Homolog 99.4 9.7E-12 2.1E-16 116.8 13.2 146 199-403 3-153 (180)
179 cd04135 Tc10 TC10 subfamily. 99.4 3.5E-12 7.6E-17 118.9 10.1 151 199-403 2-164 (174)
180 cd04146 RERG_RasL11_like RERG/ 99.4 6.8E-12 1.5E-16 116.1 11.9 147 199-403 1-154 (165)
181 PLN03126 Elongation factor Tu; 99.3 7.5E-12 1.6E-16 134.7 13.9 164 199-401 83-250 (478)
182 cd01874 Cdc42 Cdc42 subfamily. 99.3 4E-12 8.7E-17 119.3 10.5 151 199-403 3-165 (175)
183 PRK12735 elongation factor Tu; 99.3 7.2E-12 1.6E-16 132.7 13.5 165 199-402 14-182 (396)
184 cd04115 Rab33B_Rab33A Rab33B/R 99.3 8.9E-12 1.9E-16 116.1 12.6 146 199-401 4-154 (170)
185 cd00877 Ran Ran (Ras-related n 99.3 1.2E-11 2.5E-16 115.1 13.3 98 287-403 50-149 (166)
186 PRK10512 selenocysteinyl-tRNA- 99.3 1.1E-11 2.4E-16 137.4 15.3 154 199-403 2-156 (614)
187 cd01870 RhoA_like RhoA-like su 99.3 7.6E-12 1.7E-16 116.8 12.0 152 198-403 2-165 (175)
188 TIGR01394 TypA_BipA GTP-bindin 99.3 7.4E-12 1.6E-16 138.1 13.6 166 199-403 3-171 (594)
189 TIGR00231 small_GTP small GTP- 99.3 6.9E-12 1.5E-16 113.3 11.2 153 198-403 2-154 (161)
190 cd04177 RSR1 RSR1 subgroup. R 99.3 1.2E-11 2.6E-16 114.9 12.8 147 199-403 3-154 (168)
191 cd04130 Wrch_1 Wrch-1 subfamil 99.3 3.3E-12 7.1E-17 119.4 9.0 151 199-403 2-164 (173)
192 cd04169 RF3 RF3 subfamily. Pe 99.3 5.6E-12 1.2E-16 126.2 11.2 129 199-364 4-137 (267)
193 cd01871 Rac1_like Rac1-like su 99.3 1.6E-11 3.4E-16 115.2 13.4 151 199-403 3-165 (174)
194 COG1118 CysA ABC-type sulfate/ 99.3 2.3E-12 4.9E-17 126.8 7.8 164 179-358 10-196 (345)
195 cd00876 Ras Ras family. The R 99.3 1.1E-11 2.4E-16 113.3 12.0 146 199-403 1-151 (160)
196 cd04128 Spg1 Spg1p. Spg1p (se 99.3 2.6E-11 5.6E-16 114.6 14.5 149 199-403 2-156 (182)
197 PRK00049 elongation factor Tu; 99.3 1.1E-11 2.4E-16 131.2 13.3 164 199-400 14-180 (396)
198 TIGR00487 IF-2 translation ini 99.3 2.3E-11 4.9E-16 134.0 16.2 152 197-403 87-240 (587)
199 PRK10218 GTP-binding protein; 99.3 2.4E-11 5.2E-16 134.0 16.3 165 199-402 7-174 (607)
200 cd04131 Rnd Rnd subfamily. Th 99.3 1.5E-11 3.2E-16 115.9 12.6 114 199-364 3-119 (178)
201 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.3 1.9E-11 4.2E-16 115.5 13.3 152 198-403 6-170 (182)
202 COG3842 PotA ABC-type spermidi 99.3 1.8E-12 3.9E-17 132.5 6.7 164 177-358 11-195 (352)
203 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 6.6E-12 1.4E-16 120.1 10.0 125 199-368 2-134 (196)
204 cd04121 Rab40 Rab40 subfamily. 99.3 2.9E-11 6.4E-16 115.0 14.2 147 198-403 7-157 (189)
205 smart00053 DYNc Dynamin, GTPas 99.3 9.3E-12 2E-16 121.9 10.8 162 197-365 26-207 (240)
206 KOG1954 Endocytosis/signaling 99.3 2.4E-12 5.3E-17 128.3 6.3 93 9-109 437-529 (532)
207 TIGR00485 EF-Tu translation el 99.3 1.4E-11 3.1E-16 130.4 12.7 164 199-400 14-180 (394)
208 cd04148 RGK RGK subfamily. Th 99.3 1.3E-11 2.8E-16 120.4 11.1 98 287-403 51-153 (221)
209 PRK05306 infB translation init 99.3 2.3E-11 5E-16 137.1 14.5 151 196-403 289-442 (787)
210 COG1131 CcmA ABC-type multidru 99.3 3.9E-12 8.5E-17 129.1 7.1 155 176-358 9-195 (293)
211 COG3840 ThiQ ABC-type thiamine 99.3 1.2E-11 2.5E-16 113.0 9.1 165 176-359 6-189 (231)
212 cd04133 Rop_like Rop subfamily 99.3 4.4E-11 9.5E-16 112.4 13.4 151 199-403 3-163 (176)
213 PRK00007 elongation factor G; 99.3 1.2E-11 2.5E-16 139.9 10.9 159 199-398 12-171 (693)
214 PRK04004 translation initiatio 99.3 5.9E-11 1.3E-15 131.0 16.2 65 287-363 72-136 (586)
215 COG1129 MglA ABC-type sugar tr 99.3 5.2E-12 1.1E-16 133.8 7.5 173 177-361 14-206 (500)
216 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.3 4.1E-11 8.8E-16 110.2 12.2 149 198-403 23-175 (221)
217 PRK13537 nodulation ABC transp 99.3 4.8E-12 1E-16 129.4 6.9 166 177-361 13-199 (306)
218 COG3845 ABC-type uncharacteriz 99.3 5.9E-12 1.3E-16 131.1 7.5 168 176-361 9-201 (501)
219 PLN03071 GTP-binding nuclear p 99.3 3.2E-11 7E-16 117.5 12.2 147 198-403 14-162 (219)
220 cd01875 RhoG RhoG subfamily. 99.3 4.2E-11 9.1E-16 114.1 12.6 152 198-403 4-167 (191)
221 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.3 8E-11 1.7E-15 115.3 14.7 115 198-364 14-131 (232)
222 PRK13536 nodulation factor exp 99.3 6.2E-12 1.3E-16 130.3 7.1 160 177-361 47-233 (340)
223 cd01882 BMS1 Bms1. Bms1 is an 99.3 7.8E-11 1.7E-15 115.2 14.4 140 198-399 40-182 (225)
224 CHL00189 infB translation init 99.3 4.3E-11 9.3E-16 133.8 14.2 156 196-403 243-400 (742)
225 TIGR02314 ABC_MetN D-methionin 99.3 3.6E-12 7.9E-17 131.9 5.1 159 187-361 19-202 (343)
226 cd04167 Snu114p Snu114p subfam 99.3 5.1E-11 1.1E-15 115.5 12.4 133 199-363 2-136 (213)
227 PTZ00141 elongation factor 1- 99.3 4.3E-11 9.4E-16 128.3 13.0 168 199-403 9-203 (446)
228 PRK11650 ugpC glycerol-3-phosp 99.3 6.6E-12 1.4E-16 130.8 6.5 165 177-360 9-195 (356)
229 cd01850 CDC_Septin CDC/Septin. 99.2 8.8E-11 1.9E-15 118.2 14.2 51 320-371 114-164 (276)
230 PF00025 Arf: ADP-ribosylation 99.2 1.5E-11 3.3E-16 115.5 8.2 148 198-403 15-166 (175)
231 PRK09602 translation-associate 99.2 4.5E-11 9.7E-16 125.8 12.4 111 199-331 3-113 (396)
232 PRK12739 elongation factor G; 99.2 2.4E-11 5.2E-16 137.4 11.1 130 199-365 10-140 (691)
233 TIGR01393 lepA GTP-binding pro 99.2 4.7E-11 1E-15 132.1 12.8 165 199-403 5-170 (595)
234 TIGR00483 EF-1_alpha translati 99.2 5.5E-11 1.2E-15 127.3 13.0 169 199-403 9-197 (426)
235 cd01899 Ygr210 Ygr210 subfamil 99.2 6.3E-11 1.4E-15 121.1 12.6 110 200-331 1-110 (318)
236 cd03265 ABC_DrrA DrrA is the A 99.2 8.7E-12 1.9E-16 121.5 6.0 164 178-359 7-191 (220)
237 TIGR00960 3a0501s02 Type II (G 99.2 1.5E-11 3.2E-16 119.5 7.6 166 178-359 8-197 (216)
238 PRK11432 fbpC ferric transport 99.2 1.1E-11 2.4E-16 128.9 7.1 164 177-359 12-196 (351)
239 PF05049 IIGP: Interferon-indu 99.2 1.1E-09 2.5E-14 112.9 21.8 168 199-428 37-220 (376)
240 TIGR03258 PhnT 2-aminoethylpho 99.2 1E-11 2.2E-16 129.6 6.6 165 177-360 11-199 (362)
241 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.2 1.1E-10 2.3E-15 113.8 13.3 114 199-364 3-119 (222)
242 cd03261 ABC_Org_Solvent_Resist 99.2 1.2E-11 2.6E-16 121.8 6.5 165 178-359 7-196 (235)
243 TIGR01288 nodI ATP-binding ABC 99.2 1.2E-11 2.7E-16 126.4 6.8 165 177-359 10-194 (303)
244 TIGR03265 PhnT2 putative 2-ami 99.2 9.4E-12 2E-16 129.6 5.9 165 177-360 10-195 (353)
245 TIGR01188 drrA daunorubicin re 99.2 5.6E-12 1.2E-16 128.8 3.9 158 187-360 7-184 (302)
246 COG1125 OpuBA ABC-type proline 99.2 9.8E-12 2.1E-16 119.2 5.1 167 177-361 7-197 (309)
247 cd03218 ABC_YhbG The ABC trans 99.2 3.3E-11 7.1E-16 118.3 9.0 164 178-359 7-192 (232)
248 COG0410 LivF ABC-type branched 99.2 2.1E-11 4.6E-16 115.9 7.2 169 178-360 10-197 (237)
249 cd04129 Rho2 Rho2 subfamily. 99.2 1.6E-10 3.5E-15 109.5 13.1 149 199-403 3-163 (187)
250 COG4181 Predicted ABC-type tra 99.2 2.3E-11 5E-16 110.0 6.6 154 187-358 24-205 (228)
251 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.2 1.9E-11 4E-16 118.9 6.4 156 187-360 18-201 (218)
252 PRK10851 sulfate/thiosulfate t 99.2 2.4E-11 5.3E-16 126.4 7.6 168 178-359 9-196 (353)
253 PRK09452 potA putrescine/sperm 99.2 2.1E-11 4.7E-16 127.6 7.2 164 177-359 20-204 (375)
254 cd01853 Toc34_like Toc34-like 99.2 1.6E-10 3.4E-15 114.4 12.9 125 197-364 31-163 (249)
255 COG3596 Predicted GTPase [Gene 99.2 7E-10 1.5E-14 108.0 16.9 120 199-364 41-162 (296)
256 PRK13540 cytochrome c biogenes 99.2 2.6E-11 5.7E-16 116.4 7.0 166 177-367 7-194 (200)
257 KOG0092 GTPase Rab5/YPT51 and 99.2 7E-11 1.5E-15 108.7 9.2 147 198-403 6-157 (200)
258 COG1122 CbiO ABC-type cobalt t 99.2 1.7E-11 3.7E-16 119.8 5.6 169 176-361 8-200 (235)
259 COG5256 TEF1 Translation elong 99.2 2.3E-10 5E-15 117.0 13.9 177 199-413 9-209 (428)
260 COG1124 DppF ABC-type dipeptid 99.2 5.7E-11 1.2E-15 113.8 9.0 169 172-360 6-202 (252)
261 COG4148 ModC ABC-type molybdat 99.2 1.1E-10 2.4E-15 113.4 10.9 152 192-361 17-190 (352)
262 TIGR03680 eif2g_arch translati 99.2 1.6E-10 3.5E-15 122.8 13.5 105 286-403 80-186 (406)
263 COG1127 Ttg2A ABC-type transpo 99.2 5.9E-11 1.3E-15 113.3 9.0 170 177-361 14-207 (263)
264 cd03266 ABC_NatA_sodium_export 99.2 1.3E-11 2.8E-16 120.0 4.7 156 178-359 8-195 (218)
265 PRK11000 maltose/maltodextrin 99.2 2.1E-11 4.6E-16 127.8 6.5 167 177-361 9-195 (369)
266 cd03219 ABC_Mj1267_LivG_branch 99.2 4E-11 8.7E-16 118.0 8.0 168 178-359 7-202 (236)
267 KOG0073 GTP-binding ADP-ribosy 99.2 3.6E-10 7.7E-15 101.1 13.0 145 198-403 17-168 (185)
268 cd03259 ABC_Carb_Solutes_like 99.2 2.6E-11 5.6E-16 117.5 6.3 165 177-359 6-190 (213)
269 KOG0084 GTPase Rab1/YPT1, smal 99.2 1.2E-10 2.6E-15 107.6 9.9 150 197-403 9-162 (205)
270 TIGR02673 FtsE cell division A 99.2 5.4E-11 1.2E-15 115.3 8.2 157 187-359 16-196 (214)
271 TIGR00503 prfC peptide chain r 99.2 1.7E-10 3.7E-15 125.8 13.0 133 198-364 12-146 (527)
272 TIGR01186 proV glycine betaine 99.2 1.6E-11 3.4E-16 127.9 4.4 159 187-361 7-191 (363)
273 cd03235 ABC_Metallic_Cations A 99.2 5.6E-11 1.2E-15 115.2 7.9 169 178-361 6-193 (213)
274 cd00882 Ras_like_GTPase Ras-li 99.2 1.5E-10 3.2E-15 103.3 10.1 100 287-403 46-150 (157)
275 cd04103 Centaurin_gamma Centau 99.2 1E-10 2.2E-15 108.0 9.2 142 199-403 2-149 (158)
276 PRK05433 GTP-binding protein L 99.2 1.4E-10 2.9E-15 128.6 11.9 165 199-403 9-174 (600)
277 cd03301 ABC_MalK_N The N-termi 99.2 6.8E-11 1.5E-15 114.5 8.2 162 178-360 7-191 (213)
278 smart00176 RAN Ran (Ras-relate 99.2 2E-10 4.2E-15 110.3 11.1 98 287-403 45-144 (200)
279 PRK09536 btuD corrinoid ABC tr 99.2 6E-11 1.3E-15 125.1 8.2 170 177-361 9-200 (402)
280 cd03225 ABC_cobalt_CbiO_domain 99.2 1.1E-10 2.4E-15 112.8 9.4 156 178-359 6-193 (211)
281 PRK11607 potG putrescine trans 99.2 4.6E-11 9.9E-16 125.3 7.1 164 177-359 25-209 (377)
282 TIGR03864 PQQ_ABC_ATP ABC tran 99.2 4.7E-11 1E-15 117.6 6.8 166 178-361 8-194 (236)
283 COG4598 HisP ABC-type histidin 99.1 6.1E-11 1.3E-15 108.0 6.7 162 179-360 14-212 (256)
284 PRK11247 ssuB aliphatic sulfon 99.1 8.2E-11 1.8E-15 117.4 8.2 160 177-360 18-194 (257)
285 PRK11629 lolD lipoprotein tran 99.1 7.1E-11 1.5E-15 116.1 7.6 156 187-360 23-206 (233)
286 PRK13539 cytochrome c biogenes 99.1 1E-10 2.2E-15 112.9 8.5 165 178-364 9-191 (207)
287 cd03224 ABC_TM1139_LivF_branch 99.1 8.8E-11 1.9E-15 114.5 8.0 162 178-359 7-191 (222)
288 PRK11153 metN DL-methionine tr 99.1 3.8E-11 8.2E-16 124.8 5.7 158 187-360 19-201 (343)
289 cd03263 ABC_subfamily_A The AB 99.1 3.6E-11 7.9E-16 117.0 5.2 158 178-359 7-191 (220)
290 COG4525 TauB ABC-type taurine 99.1 5.9E-11 1.3E-15 109.6 6.2 166 177-361 9-194 (259)
291 TIGR03608 L_ocin_972_ABC putat 99.1 1.1E-10 2.5E-15 112.3 8.5 156 178-361 5-195 (206)
292 TIGR01166 cbiO cobalt transpor 99.1 1.1E-10 2.4E-15 111.1 8.3 151 187-362 6-189 (190)
293 PRK10908 cell division protein 99.1 6.1E-11 1.3E-15 115.7 6.7 159 187-361 16-198 (222)
294 cd03256 ABC_PhnC_transporter A 99.1 9.6E-11 2.1E-15 115.7 8.1 171 179-360 8-205 (241)
295 cd03292 ABC_FtsE_transporter F 99.1 8.1E-11 1.8E-15 114.0 7.5 159 178-360 7-196 (214)
296 PRK11300 livG leucine/isoleuci 99.1 7.6E-11 1.6E-15 117.5 7.4 171 177-359 11-213 (255)
297 TIGR02315 ABC_phnC phosphonate 99.1 8.6E-11 1.9E-15 116.2 7.8 171 178-360 8-206 (243)
298 PRK13538 cytochrome c biogenes 99.1 1.3E-10 2.8E-15 111.9 8.8 159 177-363 7-192 (204)
299 TIGR02211 LolD_lipo_ex lipopro 99.1 8E-11 1.7E-15 114.7 7.3 159 187-361 19-203 (221)
300 cd03293 ABC_NrtD_SsuB_transpor 99.1 1.4E-10 2.9E-15 113.1 8.8 147 187-359 18-191 (220)
301 cd03296 ABC_CysA_sulfate_impor 99.1 1.3E-10 2.7E-15 114.8 8.7 169 177-360 8-197 (239)
302 cd03226 ABC_cobalt_CbiO_domain 99.1 1E-10 2.3E-15 112.6 7.9 159 178-359 6-185 (205)
303 cd01873 RhoBTB RhoBTB subfamil 99.1 8E-10 1.7E-14 105.6 13.9 65 287-364 67-134 (195)
304 cd03231 ABC_CcmA_heme_exporter 99.1 1.2E-10 2.6E-15 111.8 8.3 156 178-361 7-186 (201)
305 cd04105 SR_beta Signal recogni 99.1 3.4E-10 7.4E-15 108.9 11.3 115 198-364 1-123 (203)
306 cd03262 ABC_HisP_GlnQ_permease 99.1 1.2E-10 2.7E-15 112.7 8.3 166 178-360 7-195 (213)
307 cd03268 ABC_BcrA_bacitracin_re 99.1 8.7E-11 1.9E-15 113.4 7.1 157 178-359 7-185 (208)
308 cd03264 ABC_drug_resistance_li 99.1 8.8E-11 1.9E-15 113.6 7.1 157 177-359 6-188 (211)
309 PRK10895 lipopolysaccharide AB 99.1 9.1E-11 2E-15 115.9 7.3 165 178-359 10-196 (241)
310 cd03269 ABC_putative_ATPase Th 99.1 4.9E-11 1.1E-15 115.3 5.2 164 178-359 7-187 (210)
311 cd04102 RabL3 RabL3 (Rab-like3 99.1 6.2E-10 1.3E-14 106.9 12.7 121 199-365 2-144 (202)
312 TIGR03522 GldA_ABC_ATP gliding 99.1 7.3E-11 1.6E-15 120.6 6.7 163 177-359 8-191 (301)
313 COG4161 ArtP ABC-type arginine 99.1 4E-11 8.6E-16 107.3 4.1 164 180-363 11-204 (242)
314 PRK15056 manganese/iron transp 99.1 2.3E-10 5.1E-15 115.1 10.2 173 177-360 12-202 (272)
315 TIGR03411 urea_trans_UrtD urea 99.1 1.2E-10 2.5E-15 115.2 7.7 169 178-359 9-201 (242)
316 PRK11831 putative ABC transpor 99.1 6.5E-11 1.4E-15 119.0 6.0 166 177-359 13-203 (269)
317 KOG0098 GTPase Rab2, small G p 99.1 5.9E-10 1.3E-14 101.8 11.5 149 198-403 7-158 (216)
318 COG4555 NatA ABC-type Na+ tran 99.1 3.4E-11 7.4E-16 111.8 3.2 163 178-358 8-191 (245)
319 PRK11248 tauB taurine transpor 99.1 1.2E-10 2.6E-15 116.2 7.3 165 177-359 7-188 (255)
320 KOG1490 GTP-binding protein CR 99.1 5.9E-10 1.3E-14 115.6 12.5 158 198-403 169-331 (620)
321 cd03258 ABC_MetN_methionine_tr 99.1 1.4E-10 3E-15 114.0 7.7 154 187-359 19-200 (233)
322 cd03294 ABC_Pro_Gly_Bertaine T 99.1 1.5E-10 3.3E-15 116.3 8.0 154 180-358 33-219 (269)
323 TIGR01978 sufC FeS assembly AT 99.1 2.3E-10 5.1E-15 113.1 9.2 171 178-360 7-204 (243)
324 PRK00741 prfC peptide chain re 99.1 3.5E-10 7.5E-15 123.4 11.2 133 198-364 11-145 (526)
325 PRK13644 cbiO cobalt transport 99.1 1.5E-10 3.3E-15 116.6 7.8 158 178-361 8-197 (274)
326 KOG0078 GTP-binding protein SE 99.1 4.2E-10 9E-15 105.4 10.0 153 194-403 9-164 (207)
327 cd03230 ABC_DR_subfamily_A Thi 99.1 2.4E-10 5.3E-15 107.1 8.6 135 178-359 7-154 (173)
328 PRK13651 cobalt transporter AT 99.1 1.1E-10 2.3E-15 119.4 6.6 166 177-361 8-226 (305)
329 PRK13635 cbiO cobalt transport 99.1 9E-11 2E-15 118.6 6.1 168 177-360 11-201 (279)
330 PRK15439 autoinducer 2 ABC tra 99.1 1.1E-10 2.5E-15 127.8 7.3 163 177-361 17-201 (510)
331 cd03246 ABCC_Protease_Secretio 99.1 3.2E-10 6.9E-15 106.3 9.3 141 178-359 7-155 (173)
332 TIGR01189 ccmA heme ABC export 99.1 3E-10 6.4E-15 108.9 9.3 156 178-361 7-188 (198)
333 PRK13648 cbiO cobalt transport 99.1 1.3E-10 2.7E-15 116.9 7.0 169 177-361 13-204 (269)
334 PRK10575 iron-hydroxamate tran 99.1 2.4E-10 5.2E-15 114.6 8.7 171 177-361 17-209 (265)
335 PRK11124 artP arginine transpo 99.1 1.9E-10 4.2E-15 113.6 7.9 160 177-359 8-200 (242)
336 PRK11022 dppD dipeptide transp 99.1 3.7E-10 8.1E-15 116.5 10.2 159 187-361 21-215 (326)
337 PRK13643 cbiO cobalt transport 99.1 1.6E-10 3.4E-15 117.4 7.2 158 187-361 20-205 (288)
338 PRK11264 putative amino-acid A 99.1 2.7E-10 5.9E-15 113.2 8.8 165 178-359 10-203 (250)
339 PRK13543 cytochrome c biogenes 99.1 3.1E-10 6.7E-15 110.1 8.8 156 178-361 18-198 (214)
340 PRK09493 glnQ glutamine ABC tr 99.1 2.6E-10 5.6E-15 112.6 8.4 165 178-359 8-195 (240)
341 PRK13650 cbiO cobalt transport 99.1 1.7E-10 3.6E-15 116.6 7.0 169 177-361 10-202 (279)
342 PF00071 Ras: Ras family; Int 99.1 7E-10 1.5E-14 102.0 10.5 147 199-403 1-151 (162)
343 TIGR02142 modC_ABC molybdenum 99.1 2E-10 4.4E-15 119.9 7.7 163 176-360 4-192 (354)
344 TIGR03415 ABC_choXWV_ATP choli 99.1 5.8E-11 1.3E-15 124.3 3.6 166 178-361 31-226 (382)
345 PRK10584 putative ABC transpor 99.1 2.3E-10 5.1E-15 112.0 7.6 158 187-360 24-207 (228)
346 PLN00043 elongation factor 1-a 99.1 9.1E-10 2E-14 118.1 12.7 168 199-403 9-203 (447)
347 PRK10247 putative ABC transpor 99.1 2.1E-10 4.6E-15 112.2 7.3 158 178-361 14-199 (225)
348 PRK11614 livF leucine/isoleuci 99.1 1.6E-10 3.4E-15 113.9 6.4 163 177-359 11-196 (237)
349 PTZ00416 elongation factor 2; 99.1 7.7E-10 1.7E-14 127.2 13.0 136 199-363 21-157 (836)
350 PRK09700 D-allose transporter 99.1 1.5E-10 3.3E-15 126.8 6.8 173 177-361 11-206 (510)
351 PRK10762 D-ribose transporter 99.1 2E-10 4.4E-15 125.6 7.4 171 177-361 10-202 (501)
352 PF08477 Miro: Miro-like prote 99.1 2.9E-10 6.3E-15 99.2 7.0 114 199-361 1-119 (119)
353 PRK13647 cbiO cobalt transport 99.1 1.5E-10 3.2E-15 116.7 5.9 168 177-361 10-199 (274)
354 KOG0998 Synaptic vesicle prote 99.1 1.4E-10 3.1E-15 132.0 6.4 88 7-95 119-208 (847)
355 TIGR03410 urea_trans_UrtE urea 99.1 2.1E-10 4.5E-15 112.5 6.7 160 177-360 6-192 (230)
356 TIGR03005 ectoine_ehuA ectoine 99.1 3.3E-10 7.1E-15 112.7 8.2 156 177-360 6-207 (252)
357 PRK09984 phosphonate/organopho 99.1 3.5E-10 7.6E-15 113.2 8.3 171 177-360 10-213 (262)
358 cd03216 ABC_Carb_Monos_I This 99.1 5.1E-10 1.1E-14 103.9 8.7 127 178-359 7-141 (163)
359 cd03229 ABC_Class3 This class 99.1 8.2E-10 1.8E-14 104.0 10.2 136 178-359 7-160 (178)
360 PRK10982 galactose/methyl gala 99.1 2.4E-10 5.3E-15 124.7 7.6 169 178-361 5-195 (491)
361 PRK13637 cbiO cobalt transport 99.1 2.7E-10 5.9E-15 115.6 7.4 158 187-360 21-205 (287)
362 COG4152 ABC-type uncharacteriz 99.1 1.2E-10 2.7E-15 111.1 4.5 165 177-361 8-191 (300)
363 cd03247 ABCC_cytochrome_bd The 99.1 3.4E-10 7.5E-15 106.5 7.5 138 178-361 7-158 (178)
364 PRK11144 modC molybdate transp 99.0 4E-10 8.7E-15 117.5 8.6 159 175-360 4-189 (352)
365 PRK10771 thiQ thiamine transpo 99.0 5.1E-10 1.1E-14 110.0 8.9 155 191-361 17-191 (232)
366 PTZ00132 GTP-binding nuclear p 99.0 2.1E-09 4.5E-14 104.3 13.1 98 287-403 59-158 (215)
367 PRK04000 translation initiatio 99.0 1.8E-09 3.9E-14 114.8 13.7 106 286-403 85-191 (411)
368 PRK13548 hmuV hemin importer A 99.0 5E-10 1.1E-14 111.9 8.8 162 177-359 8-200 (258)
369 cd03298 ABC_ThiQ_thiamine_tran 99.0 5.1E-10 1.1E-14 108.3 8.6 154 191-360 16-189 (211)
370 cd03295 ABC_OpuCA_Osmoprotecti 99.0 5.2E-10 1.1E-14 110.6 8.8 166 177-359 6-195 (242)
371 PRK13632 cbiO cobalt transport 99.0 2.4E-10 5.2E-15 115.0 6.5 169 177-361 13-204 (271)
372 cd03217 ABC_FeS_Assembly ABC-t 99.0 4.3E-10 9.2E-15 108.0 7.8 142 178-360 7-164 (200)
373 cd03222 ABC_RNaseL_inhibitor T 99.0 1.1E-09 2.4E-14 102.8 10.4 118 177-359 6-131 (177)
374 TIGR00972 3a0107s01c2 phosphat 99.0 5.2E-10 1.1E-14 110.9 8.7 163 178-359 8-202 (247)
375 PRK10619 histidine/lysine/argi 99.0 4.7E-10 1E-14 112.0 8.4 155 177-359 11-211 (257)
376 PRK13351 elongation factor G; 99.0 7.2E-10 1.6E-14 125.6 10.8 140 198-375 9-149 (687)
377 COG1137 YhbG ABC-type (unclass 99.0 3.7E-11 8.1E-16 111.4 0.3 156 180-358 13-197 (243)
378 PRK10253 iron-enterobactin tra 99.0 4.2E-10 9.2E-15 112.8 7.9 170 177-361 13-205 (265)
379 PRK14247 phosphate ABC transpo 99.0 1.5E-09 3.2E-14 107.9 11.7 157 177-359 9-204 (250)
380 PTZ00327 eukaryotic translatio 99.0 1.7E-09 3.8E-14 115.7 12.9 106 286-403 117-223 (460)
381 PRK13638 cbiO cobalt transport 99.0 4.6E-10 1E-14 112.9 8.0 166 177-360 7-196 (271)
382 cd03260 ABC_PstB_phosphate_tra 99.0 2.3E-10 5E-15 112.0 5.7 163 178-359 7-199 (227)
383 cd03257 ABC_NikE_OppD_transpor 99.0 6.4E-10 1.4E-14 108.8 8.7 156 187-360 19-206 (228)
384 TIGR00991 3a0901s02IAP34 GTP-b 99.0 2.4E-09 5.2E-14 107.8 12.9 120 198-364 39-167 (313)
385 PRK09435 membrane ATPase/prote 99.0 3.2E-09 7E-14 108.8 14.1 99 286-403 149-250 (332)
386 TIGR01277 thiQ thiamine ABC tr 99.0 4.2E-10 9E-15 109.1 7.3 156 189-360 14-189 (213)
387 PRK13641 cbiO cobalt transport 99.0 4.8E-10 1E-14 113.8 8.0 148 187-359 21-204 (287)
388 PRK13640 cbiO cobalt transport 99.0 2.6E-10 5.7E-15 115.4 6.1 169 177-361 11-205 (282)
389 cd03251 ABCC_MsbA MsbA is an e 99.0 1.3E-09 2.9E-14 107.0 10.9 168 179-361 8-198 (234)
390 COG1217 TypA Predicted membran 99.0 2.6E-09 5.7E-14 110.0 13.2 161 199-400 7-172 (603)
391 COG4175 ProV ABC-type proline/ 99.0 2.8E-10 6E-15 112.4 5.9 155 188-361 43-226 (386)
392 PRK11231 fecE iron-dicitrate t 99.0 4.7E-10 1E-14 111.8 7.7 167 178-359 9-197 (255)
393 cd03238 ABC_UvrA The excision 99.0 4.8E-10 1E-14 105.2 7.3 126 186-361 8-150 (176)
394 PRK09580 sufC cysteine desulfu 99.0 7E-10 1.5E-14 110.0 8.9 171 178-360 8-205 (248)
395 TIGR02836 spore_IV_A stage IV 99.0 1.8E-09 3.8E-14 111.1 11.8 77 287-363 92-193 (492)
396 cd03233 ABC_PDR_domain1 The pl 99.0 7.1E-10 1.5E-14 106.6 8.5 143 186-358 20-177 (202)
397 PRK13631 cbiO cobalt transport 99.0 5.9E-10 1.3E-14 114.7 8.5 155 187-361 40-237 (320)
398 PRK13549 xylose transporter AT 99.0 3.3E-10 7.2E-15 124.1 7.1 169 177-361 11-204 (506)
399 PRK12740 elongation factor G; 99.0 1.5E-09 3.1E-14 122.9 12.4 125 203-364 1-126 (668)
400 COG4674 Uncharacterized ABC-ty 99.0 4.9E-11 1.1E-15 110.1 0.4 163 176-360 10-206 (249)
401 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.0 1.4E-10 3.1E-15 113.3 3.7 152 180-359 31-201 (224)
402 TIGR03873 F420-0_ABC_ATP propo 99.0 6.6E-10 1.4E-14 110.8 8.6 165 178-360 8-197 (256)
403 cd03297 ABC_ModC_molybdenum_tr 99.0 6.9E-10 1.5E-14 107.6 8.5 158 176-360 5-192 (214)
404 TIGR03740 galliderm_ABC gallid 99.0 8.4E-10 1.8E-14 107.7 9.1 156 179-359 8-183 (223)
405 PRK10070 glycine betaine trans 99.0 1.7E-10 3.7E-15 121.6 4.5 157 188-360 43-225 (400)
406 PRK09473 oppD oligopeptide tra 99.0 3.8E-10 8.3E-15 116.5 7.0 157 187-360 30-222 (330)
407 CHL00131 ycf16 sulfate ABC tra 99.0 9.4E-10 2E-14 109.4 9.4 172 178-361 14-212 (252)
408 cd03252 ABCC_Hemolysin The ABC 99.0 9E-10 2E-14 108.5 9.2 167 178-359 7-196 (237)
409 cd03223 ABCD_peroxisomal_ALDP 99.0 2.1E-09 4.6E-14 100.0 11.2 132 178-359 7-147 (166)
410 PRK13646 cbiO cobalt transport 99.0 5.5E-10 1.2E-14 113.3 7.8 155 187-361 21-207 (286)
411 PRK11288 araG L-arabinose tran 99.0 4.1E-10 8.8E-15 123.2 7.3 170 177-361 10-201 (501)
412 PRK09544 znuC high-affinity zi 99.0 4.3E-10 9.2E-15 111.9 6.8 157 178-360 11-181 (251)
413 PRK15079 oligopeptide ABC tran 99.0 4.1E-10 9E-15 116.3 6.6 157 187-360 35-222 (331)
414 cd03215 ABC_Carb_Monos_II This 99.0 7.9E-10 1.7E-14 104.5 7.9 131 188-359 15-163 (182)
415 COG0444 DppD ABC-type dipeptid 99.0 4.7E-10 1E-14 112.1 6.6 171 172-359 4-213 (316)
416 PRK14246 phosphate ABC transpo 99.0 7.6E-10 1.7E-14 110.5 8.2 166 177-360 16-212 (257)
417 cd03214 ABC_Iron-Siderophores_ 99.0 1.1E-09 2.4E-14 103.3 8.7 141 178-361 6-159 (180)
418 PRK13649 cbiO cobalt transport 99.0 4.9E-10 1.1E-14 113.3 6.8 156 187-359 21-204 (280)
419 TIGR01184 ntrCD nitrate transp 99.0 3.5E-10 7.6E-15 111.0 5.4 153 190-359 2-174 (230)
420 cd03300 ABC_PotA_N PotA is an 99.0 1.3E-09 2.8E-14 107.1 9.5 157 178-359 7-190 (232)
421 PRK13541 cytochrome c biogenes 99.0 7.5E-10 1.6E-14 105.8 7.5 160 178-366 8-189 (195)
422 PTZ00258 GTP-binding protein; 99.0 1.6E-09 3.5E-14 113.0 10.6 105 197-331 21-126 (390)
423 cd03234 ABCG_White The White s 99.0 8.7E-10 1.9E-14 107.9 8.1 162 186-360 20-203 (226)
424 PRK14242 phosphate transporter 99.0 2.2E-09 4.7E-14 106.9 11.1 157 177-360 12-208 (253)
425 PF09439 SRPRB: Signal recogni 99.0 1E-09 2.3E-14 102.5 8.2 114 197-365 3-127 (181)
426 PLN00023 GTP-binding protein; 99.0 3.3E-09 7.3E-14 107.4 12.4 68 287-365 84-166 (334)
427 TIGR00968 3a0106s01 sulfate AB 99.0 5.5E-10 1.2E-14 110.1 6.6 165 178-360 7-191 (237)
428 PRK13633 cobalt transporter AT 99.0 9.5E-10 2.1E-14 111.2 8.4 159 187-361 24-206 (280)
429 cd01900 YchF YchF subfamily. 99.0 5.4E-10 1.2E-14 111.7 6.4 103 200-332 1-104 (274)
430 TIGR02324 CP_lyasePhnL phospho 99.0 6.1E-10 1.3E-14 108.8 6.6 157 187-359 22-208 (224)
431 PRK13652 cbiO cobalt transport 99.0 9E-10 2E-14 111.2 8.0 165 177-361 9-199 (277)
432 cd03245 ABCC_bacteriocin_expor 99.0 9.3E-10 2E-14 107.1 7.9 168 178-360 9-199 (220)
433 KOG0998 Synaptic vesicle prote 99.0 3E-10 6.6E-15 129.4 5.0 84 10-93 4-87 (847)
434 PRK13634 cbiO cobalt transport 99.0 7.2E-10 1.6E-14 112.7 7.3 159 187-361 21-207 (290)
435 cd03290 ABCC_SUR1_N The SUR do 99.0 1.7E-09 3.7E-14 105.1 9.6 168 178-361 7-203 (218)
436 PRK15093 antimicrobial peptide 99.0 2.3E-09 5E-14 110.9 11.1 157 187-359 21-218 (330)
437 KOG0080 GTPase Rab18, small G 99.0 2.8E-09 6.2E-14 94.9 9.8 150 197-403 11-164 (209)
438 cd03228 ABCC_MRP_Like The MRP 99.0 3E-09 6.5E-14 99.5 10.6 136 178-361 7-156 (171)
439 KOG0087 GTPase Rab11/YPT3, sma 99.0 4.4E-09 9.4E-14 98.3 11.3 151 194-403 11-166 (222)
440 PRK14273 phosphate ABC transpo 99.0 2.4E-09 5.1E-14 106.7 10.4 166 177-361 13-210 (254)
441 cd03213 ABCG_EPDR ABCG transpo 99.0 1.3E-09 2.8E-14 104.1 8.2 136 186-359 22-170 (194)
442 KOG0093 GTPase Rab3, small G p 99.0 2E-09 4.3E-14 94.4 8.4 159 188-403 12-173 (193)
443 PRK09601 GTP-binding protein Y 99.0 9.2E-10 2E-14 113.6 7.5 104 198-331 3-107 (364)
444 TIGR03269 met_CoM_red_A2 methy 99.0 6.5E-10 1.4E-14 122.2 6.9 173 177-361 6-230 (520)
445 PRK14267 phosphate ABC transpo 99.0 1.5E-09 3.3E-14 108.0 8.9 157 177-359 10-207 (253)
446 cd03369 ABCC_NFT1 Domain 2 of 99.0 1.7E-09 3.7E-14 104.3 8.9 156 178-361 13-185 (207)
447 PRK14250 phosphate ABC transpo 99.0 1.3E-09 2.7E-14 107.8 8.2 160 177-359 9-191 (241)
448 TIGR02769 nickel_nikE nickel i 99.0 1.3E-09 2.8E-14 109.3 8.3 156 187-360 25-211 (265)
449 COG2229 Predicted GTPase [Gene 99.0 1E-08 2.2E-13 94.1 13.0 159 196-403 9-168 (187)
450 TIGR02633 xylG D-xylose ABC tr 99.0 7.7E-10 1.7E-14 121.1 6.9 170 177-361 7-202 (500)
451 PRK14235 phosphate transporter 99.0 1.5E-09 3.2E-14 109.0 8.4 164 176-359 24-221 (267)
452 cd03244 ABCC_MRP_domain2 Domai 99.0 1.5E-09 3.2E-14 105.8 8.2 166 178-359 9-197 (221)
453 PRK11308 dppF dipeptide transp 99.0 1.2E-09 2.6E-14 112.7 7.9 148 187-359 29-214 (327)
454 COG1119 ModF ABC-type molybden 99.0 1.3E-09 2.8E-14 104.6 7.5 171 177-363 37-236 (257)
455 PRK14271 phosphate ABC transpo 99.0 1.5E-09 3.2E-14 109.5 8.3 165 176-359 26-221 (276)
456 PRK14256 phosphate ABC transpo 99.0 2.7E-09 5.8E-14 106.2 10.1 165 177-359 10-206 (252)
457 cd03250 ABCC_MRP_domain1 Domai 99.0 4.4E-09 9.6E-14 101.2 11.2 164 178-360 7-188 (204)
458 PRK13642 cbiO cobalt transport 99.0 7.7E-10 1.7E-14 111.7 6.1 169 177-361 10-202 (277)
459 PRK14269 phosphate ABC transpo 99.0 2.2E-09 4.7E-14 106.5 9.2 163 177-359 8-200 (246)
460 PRK10261 glutathione transport 99.0 6.2E-10 1.3E-14 124.8 5.9 152 187-361 30-230 (623)
461 PRK13547 hmuV hemin importer A 99.0 3.6E-09 7.7E-14 106.5 10.8 168 178-359 8-214 (272)
462 PRK14241 phosphate transporter 99.0 1.9E-09 4.1E-14 107.7 8.8 163 177-359 10-206 (258)
463 PRK14244 phosphate ABC transpo 99.0 3.2E-09 7E-14 105.5 10.4 155 178-359 12-207 (251)
464 KOG0394 Ras-related GTPase [Ge 99.0 4E-09 8.7E-14 96.2 9.9 145 199-403 11-168 (210)
465 TIGR02982 heterocyst_DevA ABC 98.9 1.1E-09 2.4E-14 106.6 6.8 155 187-359 19-201 (220)
466 KOG0410 Predicted GTP binding 98.9 1E-09 2.2E-14 108.5 6.2 147 196-403 177-331 (410)
467 cd03248 ABCC_TAP TAP, the Tran 98.9 2.4E-09 5.3E-14 104.7 8.9 169 177-360 17-209 (226)
468 PRK14240 phosphate transporter 98.9 3.1E-09 6.8E-14 105.6 9.7 163 177-360 9-205 (250)
469 PRK13639 cbiO cobalt transport 98.9 1.8E-09 4E-14 108.8 8.0 165 178-360 8-197 (275)
470 PLN00116 translation elongatio 98.9 3.8E-09 8.3E-14 121.8 11.5 142 199-363 21-163 (843)
471 TIGR03771 anch_rpt_ABC anchore 98.9 2.1E-09 4.7E-14 104.9 8.1 153 194-359 3-172 (223)
472 PRK14268 phosphate ABC transpo 98.9 2.4E-09 5.1E-14 107.0 8.6 162 177-359 18-212 (258)
473 cd03232 ABC_PDR_domain2 The pl 98.9 6.1E-09 1.3E-13 99.3 11.1 139 187-361 21-169 (192)
474 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.9 3.7E-09 8.1E-14 104.2 9.8 159 187-360 17-198 (238)
475 PRK14257 phosphate ABC transpo 98.9 4.5E-09 9.8E-14 108.5 10.8 167 178-361 87-285 (329)
476 PRK13636 cbiO cobalt transport 98.9 1.7E-09 3.7E-14 109.5 7.4 165 177-361 11-203 (283)
477 cd03299 ABC_ModC_like Archeal 98.9 2.8E-09 6.1E-14 105.0 8.7 146 188-359 14-189 (235)
478 cd03267 ABC_NatA_like Similar 98.9 8.1E-10 1.8E-14 108.8 4.9 150 187-359 35-213 (236)
479 cd00052 EH Eps15 homology doma 98.9 5E-09 1.1E-13 81.6 8.3 67 19-85 1-67 (67)
480 PRK09700 D-allose transporter 98.9 1.4E-09 3.1E-14 119.2 7.1 161 187-359 277-468 (510)
481 PRK10938 putative molybdenum t 98.9 1.5E-09 3.3E-14 118.5 7.2 167 177-361 9-196 (490)
482 cd03254 ABCC_Glucan_exporter_l 98.9 2.4E-09 5.2E-14 104.9 7.8 159 187-360 17-198 (229)
483 PRK14239 phosphate transporter 98.9 5.6E-09 1.2E-13 103.9 10.4 157 177-360 11-207 (252)
484 PRK10744 pstB phosphate transp 98.9 4.1E-09 8.8E-14 105.4 9.5 164 177-359 19-214 (260)
485 PRK14261 phosphate ABC transpo 98.9 5.9E-09 1.3E-13 103.8 10.6 164 177-359 12-207 (253)
486 PRK10418 nikD nickel transport 98.9 3.7E-09 8E-14 105.4 9.1 156 187-359 17-200 (254)
487 TIGR00750 lao LAO/AO transport 98.9 4.1E-08 8.9E-13 100.2 17.0 99 286-403 127-228 (300)
488 COG1123 ATPase components of v 98.9 3.1E-09 6.6E-14 113.8 8.9 171 172-359 8-214 (539)
489 cd03253 ABCC_ATM1_transporter 98.9 5.9E-09 1.3E-13 102.6 10.4 159 187-360 15-196 (236)
490 PRK15112 antimicrobial peptide 98.9 3E-09 6.4E-14 106.9 8.3 155 187-359 27-209 (267)
491 PRK14248 phosphate ABC transpo 98.9 4.6E-09 9.9E-14 105.5 9.6 164 177-359 27-222 (268)
492 cd03237 ABC_RNaseL_inhibitor_d 98.9 2.3E-09 4.9E-14 106.3 7.2 143 194-359 22-175 (246)
493 PRK14260 phosphate ABC transpo 98.9 4.4E-09 9.4E-14 105.1 9.2 165 177-360 13-209 (259)
494 PRK14245 phosphate ABC transpo 98.9 6.4E-09 1.4E-13 103.3 10.4 161 178-359 10-204 (250)
495 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.9 6.7E-09 1.5E-13 94.3 9.5 112 178-359 7-126 (144)
496 TIGR00490 aEF-2 translation el 98.9 4.1E-09 8.9E-14 119.7 9.9 128 198-364 20-152 (720)
497 PRK13645 cbiO cobalt transport 98.9 3.4E-09 7.4E-14 107.7 8.2 151 187-359 25-210 (289)
498 KOG0086 GTPase Rab4, small G p 98.9 2.7E-08 6E-13 87.8 12.6 149 198-403 10-161 (214)
499 PRK10938 putative molybdenum t 98.9 1.8E-09 3.8E-14 117.9 6.4 171 177-363 266-465 (490)
500 PRK11288 araG L-arabinose tran 98.9 1.8E-09 3.8E-14 118.3 6.4 163 187-360 267-456 (501)
No 1
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-86 Score=648.02 Aligned_cols=388 Identities=62% Similarity=1.065 Sum_probs=379.5
Q ss_pred chhhHHHHHHHHHHHHHhhccCceeeEEeCCcccCcccccccccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc
Q 009050 153 SMSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT 232 (545)
Q Consensus 153 ~~~~~~~~id~l~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~ 232 (545)
.......+.++|+++|.++++|||..|+|++|+++++.+.+|+.+|+|+++|+++.|||||||+|++.++||.++|++|+
T Consensus 14 ~~~~~~tv~~glkrlY~~kl~PLE~~Yrf~df~sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPT 93 (532)
T KOG1954|consen 14 NPEVLQTVSEGLKRLYKQKLLPLEELYRFHDFHSPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPT 93 (532)
T ss_pred CcchHHHHHHHHHHHHHHhcccHHHHHhhhhcccccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCC
Confidence 33456678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHH
Q 009050 233 TDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTG 312 (545)
Q Consensus 233 t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ 312 (545)
|+++.++|+|+++..+||++++++...+|+|+..||+.|++++.|.+.++++|+++++|||||++||+|||++|+|+|..
T Consensus 94 td~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~ 173 (532)
T KOG1954|consen 94 TDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTG 173 (532)
T ss_pred cceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEE
Q 009050 313 VTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVY 392 (545)
Q Consensus 313 ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~ 392 (545)
++.||++++|.|++++|++++++++++.+++.+|+++..++.+|+||+|.++.++++|||+++||++|+++++++|+++|
T Consensus 174 v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWslgkv~nTpev~rvY 253 (532)
T KOG1954|consen 174 VLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVSRVY 253 (532)
T ss_pred HHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhhhhhcCCCcceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCccCcccCCCccHHhhHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhchhhhHH
Q 009050 393 IGSFNDKPVNESAFGPLGKELFEKEQDDLLSDLKDIPKKACDRRINEFVKRARAAKIHAYIISHLRKEMPAMMGKAKTQQ 472 (545)
Q Consensus 393 iSa~~~~~~~~~~~~~~~~~~f~~e~e~ll~~l~~~~~~~~~~~i~~~~~~~~~~~i~a~i~~~~~~~~~~~~gk~~~~~ 472 (545)
|+++|..++.+ +..+.+|+.++.++|.+|+.+|..++.++|+++++|++++++||+|+.+++++||.++|+.++++
T Consensus 254 igSfw~hPl~~----~a~rrLfeaee~dl~rDlq~lp~ka~~rKind~ikrAr~akvHAyiis~lkkemp~~~gk~~~kk 329 (532)
T KOG1954|consen 254 IGSFWDHPLQD----PANRRLFEAEEQDLFRDLQTLPRKAALRKLNDLIKRARLAKVHAYIISCLKKEMPSVFGKEKKKK 329 (532)
T ss_pred eeccccCcccC----ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHH
Confidence 99999999996 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHccCCCcccccCChhHHHHHHHHHhhchHHHhhhccCCC
Q 009050 473 KLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLLKNFRNPY 544 (545)
Q Consensus 473 ~~i~~l~~~~~~~~~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 544 (545)
+++.+|.+||+++++++++|+|||||++.||++|+.+||++|++|++|+++.+|.||++|||+||.+|+.++
T Consensus 330 ~lidnl~~iy~~l~re~~Is~gDfPd~~~mre~l~~~df~kF~~lkpklle~vD~mla~di~~Lm~~~kkee 401 (532)
T KOG1954|consen 330 RLIDNLIDIYEKLQREHNISPGDFPDVEKMREFLQTQDFSKFKPLKPKLLEVVDDMLAYDIAELMGKIKKEE 401 (532)
T ss_pred HHHHhHHHHHHHHhHhhcCCCcCCCCHHHHHHHHhcCChhhccccCccHHHHHHHHHHhhHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=2.3e-38 Score=308.80 Aligned_cols=228 Identities=25% Similarity=0.381 Sum_probs=196.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
+|+|+|+||||||||+|+|+|.++ ++||++|+|||..+. |+.+.++
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~-----------------------GI~t~~~--------- 53 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIR-----------------------GIVTTDN--------- 53 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhhee-----------------------EEEEcCC---------
Confidence 899999999999999999999999 999999999999875 5555554
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
.++.|+||||++.. +..+.+.+.. .+...+.++|+|+|++|+.. +....+..+++.++....|+++++|
T Consensus 54 -------~QiIfvDTPGih~p-k~~l~~~m~~--~a~~sl~dvDlilfvvd~~~-~~~~~d~~il~~lk~~~~pvil~iN 122 (298)
T COG1159 54 -------AQIIFVDTPGIHKP-KHALGELMNK--AARSALKDVDLILFVVDADE-GWGPGDEFILEQLKKTKTPVILVVN 122 (298)
T ss_pred -------ceEEEEeCCCCCCc-chHHHHHHHH--HHHHHhccCcEEEEEEeccc-cCCccHHHHHHHHhhcCCCeEEEEE
Confidence 49999999999985 5555655533 56777999999999999997 5667778888999886789999999
Q ss_pred CCCCCCHHH-HHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc-----ccCCCccHHhhHHHH--------------
Q 009050 359 KADQVDTQQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE-----SAFGPLGKELFEKEQ-------------- 418 (545)
Q Consensus 359 K~D~~~~~~-l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~-----~~~~~~~~~~f~~e~-------------- 418 (545)
|+|.+..+. +......+ ....++.++ +++||++|.+++. ...+|+++|+|++++
T Consensus 123 KID~~~~~~~l~~~~~~~----~~~~~f~~i--vpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEii 196 (298)
T COG1159 123 KIDKVKPKTVLLKLIAFL----KKLLPFKEI--VPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEII 196 (298)
T ss_pred ccccCCcHHHHHHHHHHH----HhhCCcceE--EEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHH
Confidence 999998765 44443333 566677777 8999999999887 467899999999775
Q ss_pred -HHHHHHHhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhchhhhchhhhHHHHHHH
Q 009050 419 -DDLLSDLKDIPKKACDRRINEFVKR-ARAAKIHAYIISHLRKEMPAMMGKAKTQQKLIDN 477 (545)
Q Consensus 419 -e~ll~~l~~~~~~~~~~~i~~~~~~-~~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~ 477 (545)
|+++..+++|+||++.+.|++|.++ .+.++|||.|+|+++||++|+|||+|+++|.|+.
T Consensus 197 REk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ver~sQK~IiIGk~G~~iK~IG~ 257 (298)
T COG1159 197 REKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVERESQKGIIIGKNGAMIKKIGT 257 (298)
T ss_pred HHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEEEecCCccceEECCCcHHHHHHHH
Confidence 8999999999999999999999986 7799999999999999999999999999999986
No 3
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.96 E-value=1e-31 Score=269.90 Aligned_cols=227 Identities=21% Similarity=0.284 Sum_probs=172.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
+|+|+|+||||||||+|+|+|..+ ++++++|+||+..+. |+...+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~-----------------------~i~~~~~--------- 47 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRIS-----------------------GIHTTGA--------- 47 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEE-----------------------EEEEcCC---------
Confidence 699999999999999999999998 889999999887542 1111111
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
.++.|+||||+.... ....+. +...+...+.++|++++++|++.. ...+ ..++..+...+.|+++|+|
T Consensus 48 -------~qii~vDTPG~~~~~-~~l~~~--~~~~~~~~l~~aDvvl~VvD~~~~-~~~~-~~i~~~l~~~~~p~ilV~N 115 (270)
T TIGR00436 48 -------SQIIFIDTPGFHEKK-HSLNRL--MMKEARSAIGGVDLILFVVDSDQW-NGDG-EFVLTKLQNLKRPVVLTRN 115 (270)
T ss_pred -------cEEEEEECcCCCCCc-chHHHH--HHHHHHHHHhhCCEEEEEEECCCC-CchH-HHHHHHHHhcCCCEEEEEE
Confidence 268899999997631 111111 112345668999999999999873 2332 5566677777889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc-----ccCCCccHHhhHHH---------------H
Q 009050 359 KADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE-----SAFGPLGKELFEKE---------------Q 418 (545)
Q Consensus 359 K~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~-----~~~~~~~~~~f~~e---------------~ 418 (545)
|+|+.+.+++......+ .....+.++ +++||++|.|+++ ...+++++|+|+++ +
T Consensus 116 K~Dl~~~~~~~~~~~~~----~~~~~~~~v--~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ir 189 (270)
T TIGR00436 116 KLDNKFKDKLLPLIDKY----AILEDFKDI--VPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIR 189 (270)
T ss_pred CeeCCCHHHHHHHHHHH----HhhcCCCce--EEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHH
Confidence 99998765544433332 222333344 8999999999987 34567788877644 2
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhchhhhchhhhHHHHHHH
Q 009050 419 DDLLSDLKDIPKKACDRRINEFVKRA-RAAKIHAYIISHLRKEMPAMMGKAKTQQKLIDN 477 (545)
Q Consensus 419 e~ll~~l~~~~~~~~~~~i~~~~~~~-~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~ 477 (545)
|++|..+++|+||++.+.++.|.++. +.++|+|.|+|++++|++|+||++|+++|.|+.
T Consensus 190 e~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~~~s~k~iiig~~g~~ik~i~~ 249 (270)
T TIGR00436 190 EKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERESQKKIIIGKNGSMIKAIGI 249 (270)
T ss_pred HHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEECcCCceeEEEcCCcHHHHHHHH
Confidence 89999999999999999999998754 567899999999999999999999999999976
No 4
>PRK00089 era GTPase Era; Reviewed
Probab=99.96 E-value=1.2e-30 Score=265.31 Aligned_cols=228 Identities=25% Similarity=0.397 Sum_probs=177.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.+|+|+|++|||||||+|+|+|..+ +++++.|.|++..+. ++...+.
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~--~~vs~~~~tt~~~i~-----------------------~i~~~~~-------- 52 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRHRIR-----------------------GIVTEDD-------- 52 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCce--eecCCCCCcccccEE-----------------------EEEEcCC--------
Confidence 3799999999999999999999998 889999998887653 1111111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
.++.|+||||+.+... ...+.+ ...+...+.++|++++++|++. ........+++.++..+.|+++|+
T Consensus 53 --------~qi~~iDTPG~~~~~~-~l~~~~--~~~~~~~~~~~D~il~vvd~~~-~~~~~~~~i~~~l~~~~~pvilVl 120 (292)
T PRK00089 53 --------AQIIFVDTPGIHKPKR-ALNRAM--NKAAWSSLKDVDLVLFVVDADE-KIGPGDEFILEKLKKVKTPVILVL 120 (292)
T ss_pred --------ceEEEEECCCCCCchh-HHHHHH--HHHHHHHHhcCCEEEEEEeCCC-CCChhHHHHHHHHhhcCCCEEEEE
Confidence 2789999999987431 122111 2245566899999999999987 456666777777777678999999
Q ss_pred cCCCCC-CHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc-----ccCCCccHHhhHHH--------------
Q 009050 358 NKADQV-DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE-----SAFGPLGKELFEKE-------------- 417 (545)
Q Consensus 358 NK~D~~-~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~-----~~~~~~~~~~f~~e-------------- 417 (545)
||+|+. +.+++.+....+ .+..++.++ +++||+++.|+++ ...+++++|+|+++
T Consensus 121 NKiDl~~~~~~l~~~~~~l----~~~~~~~~i--~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~Ei 194 (292)
T PRK00089 121 NKIDLVKDKEELLPLLEEL----SELMDFAEI--VPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEI 194 (292)
T ss_pred ECCcCCCCHHHHHHHHHHH----HhhCCCCeE--EEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 999998 556665555554 233334445 8999999999887 34556677777644
Q ss_pred -HHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhchhhhHHHHHHH
Q 009050 418 -QDDLLSDLKDIPKKACDRRINEFVKRARAAKIHAYIISHLRKEMPAMMGKAKTQQKLIDN 477 (545)
Q Consensus 418 -~e~ll~~l~~~~~~~~~~~i~~~~~~~~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~ 477 (545)
+|+++..+++|+||++.+.+++|.++ +.++|+|.|+|++++|++|+||++|++++.|+.
T Consensus 195 iRe~~~~~l~~e~p~~~~v~~~~~~~~-~~~~i~~~i~v~~~~~k~i~ig~~g~~i~~i~~ 254 (292)
T PRK00089 195 IREKLLRLLGDELPYSVAVEIEKFEER-GLVRIEATIYVERDSQKGIIIGKGGAMLKKIGT 254 (292)
T ss_pred HHHHHHhhCCccCCceEEEEEEEEEEC-CeEEEEEEEEEccCCceeEEEeCCcHHHHHHHH
Confidence 48899999999999999999999887 778899999999999999999999999999976
No 5
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.96 E-value=3e-30 Score=265.70 Aligned_cols=262 Identities=20% Similarity=0.254 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHh-CCCCC--CcccccccCCCCCCCCCcccccchhhhhhccCCCCCCCC-CCCCCCCCCCcccccccccc
Q 009050 73 FIAAMQLISLVQ-DGHQV--THDLWNSDVDFQNLKPPAMEGLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSKS 148 (545)
Q Consensus 73 F~~am~Li~~~~-~g~~~--~~~l~~~~~~~~~l~~p~~~~l~~~i~a~t~~~~~~a~~-l~g~~~~~~~~~~~~~~~~~ 148 (545)
.++.=.++..+. .|..+ |.|.-.+||.++|++|.++|++.|+|.|+|+.+++.|.+ ++|.|+. .+..|++.+
T Consensus 89 ~~v~~~iL~~~l~~GaR~AepGEFs~RAFLNgK~DLtqAEai~dLI~A~te~a~r~A~~~l~G~ls~---~i~~lr~~l- 164 (454)
T COG0486 89 PVVVNLILELLLKLGARLAEPGEFSKRAFLNGKLDLTQAEAIADLIDAKTEQAARIALRQLQGALSQ---LINELREAL- 164 (454)
T ss_pred HHHHHHHHHHHHHcCCeecCCCcchHHHHhcCCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHH---HHHHHHHHH-
Confidence 334444444443 35333 666666788889999999999999999999999999999 9997777 899999999
Q ss_pred ccccchhhHHHHHHHHHH--------HHHhhccCceeeEEeCCcccCcccccccccCceEEEEcCCCCChHHHHHHHHcc
Q 009050 149 SKKISMSSVTSIIDGLKR--------LYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRT 220 (545)
Q Consensus 149 ~~~~~~~~~~~~id~l~~--------~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~ 220 (545)
++ .++.+|+.||+-++ ....++..+.. .+.......-++.-+..+..|+|+|+||||||||+|+|+++
T Consensus 165 i~--~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~--~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~ 240 (454)
T COG0486 165 LE--LLAQVEANIDFPEEDIEELVLEKIREKLEELIA--ELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGR 240 (454)
T ss_pred HH--HHHHheEeCCCCcccccchhHHHHHHHHHHHHH--HHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcC
Confidence 88 99999999995333 22333333222 23333333445555677779999999999999999999999
Q ss_pred cCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCCh-
Q 009050 221 SYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSG- 299 (545)
Q Consensus 221 ~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sg- 299 (545)
+. ++|++.|+|||..+- ..+.+.|+ .+.++||+|++..
T Consensus 241 d~--AIVTdI~GTTRDvie-----------------e~i~i~G~----------------------pv~l~DTAGiRet~ 279 (454)
T COG0486 241 DR--AIVTDIAGTTRDVIE-----------------EDINLNGI----------------------PVRLVDTAGIRETD 279 (454)
T ss_pred Cc--eEecCCCCCccceEE-----------------EEEEECCE----------------------EEEEEecCCcccCc
Confidence 99 999998777777753 34445565 8899999999983
Q ss_pred ---hhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHH
Q 009050 300 ---EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALM 376 (545)
Q Consensus 300 ---ekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~ 376 (545)
|+.++.| ++..+++||+||+++|++.. ...++..++. +...++|+++|+||+|+.........
T Consensus 280 d~VE~iGIeR-------s~~~i~~ADlvL~v~D~~~~-~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~----- 345 (454)
T COG0486 280 DVVERIGIER-------AKKAIEEADLVLFVLDASQP-LDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE----- 345 (454)
T ss_pred cHHHHHHHHH-------HHHHHHhCCEEEEEEeCCCC-CchhhHHHHH-hcccCCCEEEEEechhcccccccchh-----
Confidence 6667664 45678999999999999973 4566666666 44557899999999999976543222
Q ss_pred HHhcccccCCccEEEEeeccCCCccCc
Q 009050 377 WSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 377 ~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+.. .....+.+|+++|+|++.
T Consensus 346 ----~~~--~~~~~i~iSa~t~~Gl~~ 366 (454)
T COG0486 346 ----KLA--NGDAIISISAKTGEGLDA 366 (454)
T ss_pred ----hcc--CCCceEEEEecCccCHHH
Confidence 111 111238999999999886
No 6
>PRK15494 era GTPase Era; Provisional
Probab=99.96 E-value=1.4e-30 Score=269.00 Aligned_cols=227 Identities=19% Similarity=0.300 Sum_probs=170.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+|+|+|..+ ++++++++||+..+. +....++
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~--~ivs~k~~tTr~~~~-----------------------~~~~~~~--------- 99 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKL--SIVTPKVQTTRSIIT-----------------------GIITLKD--------- 99 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCce--eeccCCCCCccCcEE-----------------------EEEEeCC---------
Confidence 899999999999999999999998 888999988875532 1111111
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
.++.|+||||+.... ..+.+.+ ...+...+..+|++|+++|+.. .+......++..++..+.|+++|+|
T Consensus 100 -------~qi~~~DTpG~~~~~-~~l~~~~--~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~IlViN 168 (339)
T PRK15494 100 -------TQVILYDTPGIFEPK-GSLEKAM--VRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPIFLLN 168 (339)
T ss_pred -------eEEEEEECCCcCCCc-ccHHHHH--HHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 278999999996421 1111111 1123345789999999999876 4455555677777777778889999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc-----ccCCCccHHhhHHHH---------------
Q 009050 359 KADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE-----SAFGPLGKELFEKEQ--------------- 418 (545)
Q Consensus 359 K~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~-----~~~~~~~~~~f~~e~--------------- 418 (545)
|+|+.+. .+.+....+ .....+..+ +++||++|.|+++ ...+++++|+|+++.
T Consensus 169 KiDl~~~-~~~~~~~~l----~~~~~~~~i--~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiR 241 (339)
T PRK15494 169 KIDIESK-YLNDIKAFL----TENHPDSLL--FPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITR 241 (339)
T ss_pred hhcCccc-cHHHHHHHH----HhcCCCcEE--EEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 9998753 222222222 222222334 8999999999887 456788999988653
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhchhhhchhhhHHHHHHH
Q 009050 419 DDLLSDLKDIPKKACDRRINEFVKRA-RAAKIHAYIISHLRKEMPAMMGKAKTQQKLIDN 477 (545)
Q Consensus 419 e~ll~~l~~~~~~~~~~~i~~~~~~~-~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~ 477 (545)
|++|..+++|+||++.+.|+.|.++. +.++|+|.|+|++++|++|+||++|+++|.|+.
T Consensus 242 e~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~sqk~iiiG~~g~~ik~i~~ 301 (339)
T PRK15494 242 EQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYKTIILGKNGSKIKEIGA 301 (339)
T ss_pred HHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCCceeEEEcCCcHHHHHHHH
Confidence 89999999999999999999998764 567899999999999999999999999999986
No 7
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.94 E-value=2.9e-28 Score=235.99 Aligned_cols=234 Identities=17% Similarity=0.253 Sum_probs=177.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.||+|||||.|.++|..+ ++++.++.|||..+. |+.+.|.
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv--~~vS~K~~TTr~~il-----------------------gi~ts~e--------- 119 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKV--SAVSRKVHTTRHRIL-----------------------GIITSGE--------- 119 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCcc--ccccccccceeeeee-----------------------EEEecCc---------
Confidence 899999999999999999999999 999999999999875 5555554
Q ss_pred cCchhhccCceeecCCCCCCh-hhhhhhhccChHHHHHHHhcCCCEEEEEeCCCC--CCccHHHHHHHHHHhcCCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSG-EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK--LDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sg-ekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~--~~~~~~~~~~l~~L~~~~~~iii 355 (545)
.++.|.||||+.+. +..+....+.+.+-.+..+++||+|++++|+++ ..+...+...+.... ..|-++
T Consensus 120 -------TQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys--~ips~l 190 (379)
T KOG1423|consen 120 -------TQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS--KIPSIL 190 (379)
T ss_pred -------eEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh--cCCcee
Confidence 48999999999982 222222223333345677899999999999984 233444444444443 468899
Q ss_pred EecCCCCCCHH-HHHHHHHHHH----------HH----hcc----------cccCCccEEEEeeccCCCccCc-----cc
Q 009050 356 VLNKADQVDTQ-QLMRVYGALM----------WS----LGK----------VLNTPEVVRVYIGSFNDKPVNE-----SA 405 (545)
Q Consensus 356 VlNK~D~~~~~-~l~~v~~~l~----------~~----l~k----------~~~~~~v~~v~iSa~~~~~~~~-----~~ 405 (545)
|+||+|..... .++.....+. |. ... .-.+.++ |++||++|+|+++ .+
T Consensus 191 vmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~v--F~vSaL~G~GikdlkqyLms 268 (379)
T KOG1423|consen 191 VMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERV--FMVSALYGEGIKDLKQYLMS 268 (379)
T ss_pred eccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeE--EEEecccccCHHHHHHHHHh
Confidence 99999988643 2332221110 00 001 1123445 8999999999998 45
Q ss_pred CCCccHHhhHHH---------------HHHHHHHHhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhchhhhchhh
Q 009050 406 FGPLGKELFEKE---------------QDDLLSDLKDIPKKACDRRINEFVKR-ARAAKIHAYIISHLRKEMPAMMGKAK 469 (545)
Q Consensus 406 ~~~~~~~~f~~e---------------~e~ll~~l~~~~~~~~~~~i~~~~~~-~~~~~i~a~i~~~~~~~~~~~~gk~~ 469 (545)
.++.++|.|+++ ++++|+++.+++||.++.+|..|.++ ++.+.|...++|.+.++..++||++|
T Consensus 269 qa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVPY~lq~~i~~w~e~~~g~l~I~~~v~~pK~s~~klliGkgG 348 (379)
T KOG1423|consen 269 QAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVPYNLQVRILSWKERPAGVLFIQVEVVCPKNSQKKLLIGKGG 348 (379)
T ss_pred cCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccCcceEEEEEEeeecCCcEEEEEEEEEcCCCcceeEEEcCCC
Confidence 678888888743 38999999999999999999999987 45888999999999999999999999
Q ss_pred hHHHHHHH
Q 009050 470 TQQKLIDN 477 (545)
Q Consensus 470 ~~~~~i~~ 477 (545)
.+++.|+.
T Consensus 349 ~ki~qI~~ 356 (379)
T KOG1423|consen 349 KKISQIGT 356 (379)
T ss_pred ccHHHHHH
Confidence 99998864
No 8
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.91 E-value=1e-24 Score=184.69 Aligned_cols=95 Identities=34% Similarity=0.573 Sum_probs=79.3
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCC--
Q 009050 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDG-- 86 (545)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~g-- 86 (545)
..||++|+++|+++|..+|+ .+|+|+|++|++||++||||.++|++||+|||.+++|+||++||++|||||.++++|
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~ 80 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNG 80 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999997 579999999999999999999999999999999999999999999999999998864
Q ss_pred CCCCcccccccCCCCCCCCCcccc
Q 009050 87 HQVTHDLWNSDVDFQNLKPPAMEG 110 (545)
Q Consensus 87 ~~~~~~l~~~~~~~~~l~~p~~~~ 110 (545)
.++|.+||+ .+-+|+...
T Consensus 81 ~~lP~~LP~------~L~p~s~~~ 98 (104)
T PF12763_consen 81 KPLPSSLPP------SLIPPSKRP 98 (104)
T ss_dssp S---SSSSG------GGSSSCG--
T ss_pred CCCchhcCH------HHCCCCccc
Confidence 599999877 566665543
No 9
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=1.1e-25 Score=239.65 Aligned_cols=247 Identities=19% Similarity=0.229 Sum_probs=169.3
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHHh-----cCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCCCCCc
Q 009050 33 RITGNDATKFFALSNLSRQDLKQVWAIA-----DAKRQGYLGYREFIAAMQLISLVQDGHQVTHDLWNSDVDFQNLKPPA 107 (545)
Q Consensus 33 ~i~g~~~~~~~~~s~L~~~~L~~Iw~l~-----D~~~~g~L~~~eF~~am~Li~~~~~g~~~~~~l~~~~~~~~~l~~p~ 107 (545)
..||+++++|...-| +.++..|-+.+ ..-.-|.+|++ ||.++++++.+
T Consensus 64 S~TGEDvvEi~~HGg--~~v~~~il~~l~~~g~R~A~pGEFT~R-------------------------AflNGk~DL~q 116 (442)
T TIGR00450 64 SYTGEDVIEIQCHGS--MLIVQEILQLCLKSGARLAQPGEFTQR-------------------------AFLNGKMDLTQ 116 (442)
T ss_pred CcccccEEEEECCCC--HHHHHHHHHHHHHcCCeEcCCchhhHH-------------------------HHhcCCccHHH
Confidence 478888888877554 34444444432 22233444444 55559999999
Q ss_pred ccccchhhhhhccCCCCCCCC-CCCCCCCCCCccccccccccccccchhhHHHHHHHHHH-----HHHhhccCceeeEEe
Q 009050 108 MEGLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSKSSKKISMSSVTSIIDGLKR-----LYIQKLKPLEVTYRF 181 (545)
Q Consensus 108 ~~~l~~~i~a~t~~~~~~a~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~l~~-----~~~~~l~~l~~~~~~ 181 (545)
+|++.++|+|+|+.+++.|.+ ++|.++. .+..||+++ ++ ..+.+|+.||+-++ ...+++..+.. ..
T Consensus 117 aEav~dlI~a~t~~~~~~A~~~l~G~ls~---~~~~~r~~l-~~--~~a~iea~iDf~ee~~~~~~~~~~l~~~~~--~l 188 (442)
T TIGR00450 117 AEAINELILAPNNKVKDIALNKLAGELDQ---KIEAIRKSL-LQ--LLAQVEVNIDYEEDDDEQDSLNQLLLSIIA--EL 188 (442)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCcHHHH---HHHHHHHHH-HH--HHHHeeEECCcCCCCccHHHHHHHHHHHHH--HH
Confidence 999999999999999999999 9997777 899999999 88 99999999996432 11222221111 11
Q ss_pred CCcccCcccccccccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCC
Q 009050 182 NDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPF 261 (545)
Q Consensus 182 ~~~~~~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~ 261 (545)
....... ....+..+..|+|+|++|||||||+|+|++... +++++.|+||+..+.. ...+
T Consensus 189 ~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~--aivs~~pgtTrd~~~~-----------------~i~~ 248 (442)
T TIGR00450 189 KDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDR--AIVSDIKGTTRDVVEG-----------------DFEL 248 (442)
T ss_pred HHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCC--cccCCCCCcEEEEEEE-----------------EEEE
Confidence 1111111 122344556899999999999999999999886 7888888777654321 0111
Q ss_pred CCcccccccchhhhhhhcCchhhccCceeecCCCCCCh----hhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccH
Q 009050 262 SGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSG----EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISD 337 (545)
Q Consensus 262 ~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sg----ekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~ 337 (545)
.| ..+.++||||+... ++.++. .+..++.++|++++|+|++.. .+.
T Consensus 249 ~g----------------------~~v~l~DTaG~~~~~~~ie~~gi~-------~~~~~~~~aD~il~V~D~s~~-~s~ 298 (442)
T TIGR00450 249 NG----------------------ILIKLLDTAGIREHADFVERLGIE-------KSFKAIKQADLVIYVLDASQP-LTK 298 (442)
T ss_pred CC----------------------EEEEEeeCCCcccchhHHHHHHHH-------HHHHHHhhCCEEEEEEECCCC-CCh
Confidence 12 26789999999652 222222 244568999999999999863 333
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCCCCH
Q 009050 338 EFKRVITSLRGHDDKIRVVLNKADQVDT 365 (545)
Q Consensus 338 ~~~~~l~~L~~~~~~iiiVlNK~D~~~~ 365 (545)
+.. ++..+...+.|+++|+||+|+...
T Consensus 299 ~~~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 299 DDF-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred hHH-HHHHHhhCCCCEEEEEECccCCCc
Confidence 333 667776667899999999998753
No 10
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=1.9e-25 Score=239.02 Aligned_cols=275 Identities=19% Similarity=0.235 Sum_probs=180.1
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHHhc-----CCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCCCCCc
Q 009050 33 RITGNDATKFFALSNLSRQDLKQVWAIAD-----AKRQGYLGYREFIAAMQLISLVQDGHQVTHDLWNSDVDFQNLKPPA 107 (545)
Q Consensus 33 ~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D-----~~~~g~L~~~eF~~am~Li~~~~~g~~~~~~l~~~~~~~~~l~~p~ 107 (545)
..||+++++|...-| +.++..|-+..- .-.-|.+++. ||.++++++.+
T Consensus 72 S~TGEd~vEi~~HG~--~~v~~~il~~l~~~g~r~A~pGEFt~R-------------------------Aflngk~dL~q 124 (449)
T PRK05291 72 SFTGEDVVEIQCHGG--PAVLNLILELLLALGARLAEPGEFTKR-------------------------AFLNGKLDLTQ 124 (449)
T ss_pred CccCCcEEEEECCCC--HHHHHHHHHHHHHcCCEEccCccchHH-------------------------HHhcCCcCHHH
Confidence 358888888777444 444455544332 2233444444 55559999999
Q ss_pred ccccchhhhhhccCCCCCCCC-CCCCCCCCCCccccccccccccccchhhHHHHHHHHHH--------HHHhhccCceee
Q 009050 108 MEGLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSKSSKKISMSSVTSIIDGLKR--------LYIQKLKPLEVT 178 (545)
Q Consensus 108 ~~~l~~~i~a~t~~~~~~a~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~l~~--------~~~~~l~~l~~~ 178 (545)
+|++.++|+|+|+.+++.|.+ ++|.++. .+..||+++ .+ ..+.+|+.||+-++ ....++..+...
T Consensus 125 aEai~~li~a~t~~~~~~al~~l~G~l~~---~~~~~r~~l-~~--~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~ 198 (449)
T PRK05291 125 AEAIADLIDAKTEAAARLALRQLQGALSK---LINELREEL-LE--LLALVEAAIDFPEEDIEFLSDEKILEKLEELIAE 198 (449)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCcHHHH---HHHHHHHHH-HH--HHHHheEEccCCCCCcccccHHHHHHHHHHHHHH
Confidence 999999999999999999999 9997776 899999999 78 88999988884322 222333332221
Q ss_pred EEeCCcccCcccccccccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecC
Q 009050 179 YRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQAD 258 (545)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~ 258 (545)
........-.+..+..+..|+++|.+|||||||+|+|+|.+. .++++.|.||+......
T Consensus 199 --l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~--a~v~~~~gtT~d~~~~~----------------- 257 (449)
T PRK05291 199 --LEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEER--AIVTDIAGTTRDVIEEH----------------- 257 (449)
T ss_pred --HHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCcccccEEEE-----------------
Confidence 111000011122234456899999999999999999999886 77888887776543210
Q ss_pred CCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHH
Q 009050 259 MPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDE 338 (545)
Q Consensus 259 ~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~ 338 (545)
..+.| ..+.++||||+.... ..+.. ..+ ..+...+.++|++++|+|+++. .+.+
T Consensus 258 i~~~g----------------------~~i~l~DT~G~~~~~-~~ie~-~gi-~~~~~~~~~aD~il~VvD~s~~-~s~~ 311 (449)
T PRK05291 258 INLDG----------------------IPLRLIDTAGIRETD-DEVEK-IGI-ERSREAIEEADLVLLVLDASEP-LTEE 311 (449)
T ss_pred EEECC----------------------eEEEEEeCCCCCCCc-cHHHH-HHH-HHHHHHHHhCCEEEEEecCCCC-CChh
Confidence 01112 268899999986521 11110 000 0133458999999999999873 3334
Q ss_pred HHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 339 FKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 339 ~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
...++.. ..+.|+++|+||+|+.+..... . ......+++||++|.|+++
T Consensus 312 ~~~~l~~--~~~~piiiV~NK~DL~~~~~~~-----------~---~~~~~~i~iSAktg~GI~~ 360 (449)
T PRK05291 312 DDEILEE--LKDKPVIVVLNKADLTGEIDLE-----------E---ENGKPVIRISAKTGEGIDE 360 (449)
T ss_pred HHHHHHh--cCCCCcEEEEEhhhccccchhh-----------h---ccCCceEEEEeeCCCCHHH
Confidence 4444444 3468999999999997643321 0 1112237999999999886
No 11
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=7e-22 Score=203.10 Aligned_cols=236 Identities=17% Similarity=0.229 Sum_probs=163.5
Q ss_pred HHHHHHHHHhC---CCCC--CcccccccCCCCCCCCCcccccchhhhhhccCCCCCCCC-CCCCCCCCCCcccccccccc
Q 009050 75 AAMQLISLVQD---GHQV--THDLWNSDVDFQNLKPPAMEGLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSKS 148 (545)
Q Consensus 75 ~am~Li~~~~~---g~~~--~~~l~~~~~~~~~l~~p~~~~l~~~i~a~t~~~~~~a~~-l~g~~~~~~~~~~~~~~~~~ 148 (545)
+-+.|-++.+. |..+ |.+...++|.+++.++.+.+++.++|.+.|+.|+..|.. +.|.+.. ..+.|+..+
T Consensus 139 v~~~l~a~~~sg~~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~g~~~~---l~~~~r~~l- 214 (531)
T KOG1191|consen 139 VVGVLTALGASGIPGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVAGEALA---LCFGWRKIL- 214 (531)
T ss_pred hhhHHHHhhhccCCCccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhhhcchhHH---hhhhHHHHH-
Confidence 34455555533 4443 556666688999999999999999999999999999999 9996555 677799999
Q ss_pred ccccchhhHHHHHHHHHH-----HHHhhccC--ceeeEEeCCcccCcccccccccCceEEEEcCCCCChHHHHHHHHccc
Q 009050 149 SKKISMSSVTSIIDGLKR-----LYIQKLKP--LEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTS 221 (545)
Q Consensus 149 ~~~~~~~~~~~~id~l~~-----~~~~~l~~--l~~~~~~~~~~~~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~ 221 (545)
++ ..+.+++.||+-++ .+...+.. ++..-........+-..-.+..++.|+|+|+||+|||||+|+|+..+
T Consensus 215 Ie--~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~d 292 (531)
T KOG1191|consen 215 IE--ALAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSRED 292 (531)
T ss_pred HH--HHhccceeechhhcCchhhccchhhhhHHHHHHHHHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCC
Confidence 88 88899999885332 22211111 00000000011112222345566799999999999999999999999
Q ss_pred CCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCC---
Q 009050 222 YPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS--- 298 (545)
Q Consensus 222 ~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s--- 298 (545)
+ ++|++.|.|||..+- ..+.++|. .+.|+||+|++.
T Consensus 293 r--sIVSpv~GTTRDaie-----------------a~v~~~G~----------------------~v~L~DTAGiRe~~~ 331 (531)
T KOG1191|consen 293 R--SIVSPVPGTTRDAIE-----------------AQVTVNGV----------------------PVRLSDTAGIREESN 331 (531)
T ss_pred c--eEeCCCCCcchhhhe-----------------eEeecCCe----------------------EEEEEeccccccccC
Confidence 9 999998888887752 23334564 899999999987
Q ss_pred --hhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc------------CCCeEEEEecCCCCCC
Q 009050 299 --GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG------------HDDKIRVVLNKADQVD 364 (545)
Q Consensus 299 --gekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~------------~~~~iiiVlNK~D~~~ 364 (545)
.|+..+. .++..+.++|+|++++|+... .++++..+.+.+.. ...+++++.||+|+..
T Consensus 332 ~~iE~~gI~-------rA~k~~~~advi~~vvda~~~-~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s 403 (531)
T KOG1191|consen 332 DGIEALGIE-------RARKRIERADVILLVVDAEES-DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVS 403 (531)
T ss_pred ChhHHHhHH-------HHHHHHhhcCEEEEEeccccc-ccccchHHHHHHHHhccceEEEeccccccceEEEechhhccC
Confidence 2444555 356678999999999999542 23333333333321 1257899999999886
Q ss_pred H
Q 009050 365 T 365 (545)
Q Consensus 365 ~ 365 (545)
+
T Consensus 404 ~ 404 (531)
T KOG1191|consen 404 K 404 (531)
T ss_pred c
Confidence 4
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=9.2e-20 Score=187.93 Aligned_cols=152 Identities=23% Similarity=0.361 Sum_probs=117.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
|.|+|+|+||+|||||+|+|+|... ++|+..|++||..+... ..|.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~-----------------~~~~~-------------- 50 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGD-----------------AEWLG-------------- 50 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccce-----------------eEEcC--------------
Confidence 7899999999999999999999999 99999998888876311 11112
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..+.++||+|+-.+..+.+.+.+ .+.+...+.+||++||++|+.. +++.++..+.+.|+..++|+++|+
T Consensus 51 --------~~f~lIDTgGl~~~~~~~l~~~i--~~Qa~~Ai~eADvilfvVD~~~-Git~~D~~ia~~Lr~~~kpviLvv 119 (444)
T COG1160 51 --------REFILIDTGGLDDGDEDELQELI--REQALIAIEEADVILFVVDGRE-GITPADEEIAKILRRSKKPVILVV 119 (444)
T ss_pred --------ceEEEEECCCCCcCCchHHHHHH--HHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCEEEEE
Confidence 26899999999853222222111 2257788999999999999987 889999999999998889999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|..+.++. ...+|++| +.++ ++|||.+|.|+.+
T Consensus 120 NK~D~~~~e~~----~~efyslG----~g~~--~~ISA~Hg~Gi~d 155 (444)
T COG1160 120 NKIDNLKAEEL----AYEFYSLG----FGEP--VPISAEHGRGIGD 155 (444)
T ss_pred EcccCchhhhh----HHHHHhcC----CCCc--eEeehhhccCHHH
Confidence 99998743332 12234444 5667 8999999999887
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.81 E-value=7.3e-21 Score=173.42 Aligned_cols=144 Identities=25% Similarity=0.341 Sum_probs=98.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.||||||||+|+|+|.. ..+++.|.+|..... |....+.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~---~~v~n~pG~Tv~~~~-----------------------g~~~~~~--------- 46 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK---QKVGNWPGTTVEKKE-----------------------GIFKLGD--------- 46 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS---EEEEESTTSSSEEEE-----------------------EEEEETT---------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ceecCCCCCCeeeee-----------------------EEEEecC---------
Confidence 58999999999999999999999 678886666654432 2222221
Q ss_pred cCchhhccCceeecCCCCCCh----hhhhhhhccChHHHHHHHh--cCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe
Q 009050 279 QMPHSLLEHITLVDTPGVLSG----EKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK 352 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sg----ekq~v~~~~~~~~ia~~~~--~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ 352 (545)
..+.|+||||+++- +.++ +++.++ +++|++++++|+++ .++...++.++.+.+.|
T Consensus 47 -------~~~~lvDlPG~ysl~~~s~ee~---------v~~~~l~~~~~D~ii~VvDa~~---l~r~l~l~~ql~e~g~P 107 (156)
T PF02421_consen 47 -------QQVELVDLPGIYSLSSKSEEER---------VARDYLLSEKPDLIIVVVDATN---LERNLYLTLQLLELGIP 107 (156)
T ss_dssp -------EEEEEEE----SSSSSSSHHHH---------HHHHHHHHTSSSEEEEEEEGGG---HHHHHHHHHHHHHTTSS
T ss_pred -------ceEEEEECCCcccCCCCCcHHH---------HHHHHHhhcCCCEEEEECCCCC---HHHHHHHHHHHHHcCCC
Confidence 38899999999882 2222 344443 79999999999987 35667888999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|......+.--...+ ++.++ ++.+++||.+++|+++
T Consensus 108 ~vvvlN~~D~a~~~g~~id~~~L----s~~Lg---~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 108 VVVVLNKMDEAERKGIEIDAEKL----SERLG---VPVIPVSARTGEGIDE 151 (156)
T ss_dssp EEEEEETHHHHHHTTEEE-HHHH----HHHHT---S-EEEEBTTTTBTHHH
T ss_pred EEEEEeCHHHHHHcCCEECHHHH----HHHhC---CCEEEEEeCCCcCHHH
Confidence 99999999987543211111112 22233 3448999999999875
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=7.1e-19 Score=181.38 Aligned_cols=160 Identities=20% Similarity=0.323 Sum_probs=121.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|||+|.||+|||||+|+|+|++. .++++.|.|||..+-. .+.+.+
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR--~Iv~~~aGTTRD~I~~-----------------~~e~~~------------- 225 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEER--VIVSDIAGTTRDSIDI-----------------EFERDG------------- 225 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCce--EEecCCCCccccceee-----------------eEEECC-------------
Confidence 45899999999999999999999999 9999999888887641 111222
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHH--HHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTS--WFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR 354 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~--~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ii 354 (545)
..+.++||+|+.- +.++..+..+..+++ ..+..+|++++++|++. ++++++.++...+.+.+.+++
T Consensus 226 ---------~~~~liDTAGiRr--k~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-~~~~qD~~ia~~i~~~g~~~v 293 (444)
T COG1160 226 ---------RKYVLIDTAGIRR--KGKITESVEKYSVARTLKAIERADVVLLVIDATE-GISEQDLRIAGLIEEAGRGIV 293 (444)
T ss_pred ---------eEEEEEECCCCCc--ccccccceEEEeehhhHhHHhhcCEEEEEEECCC-CchHHHHHHHHHHHHcCCCeE
Confidence 3789999999975 233333333333444 34899999999999998 789999999999999999999
Q ss_pred EEecCCCCCCH--HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDT--QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~--~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+++. ....+....+...+ ..+.+..+ +++||.+|.++..
T Consensus 294 IvvNKWDl~~~~~~~~~~~k~~i~~~l-~~l~~a~i--~~iSA~~~~~i~~ 341 (444)
T COG1160 294 IVVNKWDLVEEDEATMEEFKKKLRRKL-PFLDFAPI--VFISALTGQGLDK 341 (444)
T ss_pred EEEEccccCCchhhHHHHHHHHHHHHh-ccccCCeE--EEEEecCCCChHH
Confidence 99999999875 33334434443222 33444544 8999999999885
No 15
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.8e-19 Score=190.52 Aligned_cols=93 Identities=31% Similarity=0.417 Sum_probs=88.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q 009050 4 GTGPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (545)
Q Consensus 4 ~~~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~ 83 (545)
+....|.+|++||++|++.|.++.+. .|+|+|++|++||++||||..+|++||.|+|.|+||.||..||++||+||.++
T Consensus 3 g~~n~WavT~~Er~K~~~qF~~Lkp~-~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lk 81 (1118)
T KOG1029|consen 3 GMTNPWAVTDEERQKHDAQFGQLKPG-QGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLK 81 (1118)
T ss_pred CCCCccccchHHHHHHHHHHhccCCC-CCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHH
Confidence 45678999999999999999999884 69999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCccccccc
Q 009050 84 QDGHQVTHDLWNSD 97 (545)
Q Consensus 84 ~~g~~~~~~l~~~~ 97 (545)
++|+++|+.|+|+.
T Consensus 82 LqG~~lP~~LPPsl 95 (1118)
T KOG1029|consen 82 LQGIQLPPVLPPSL 95 (1118)
T ss_pred hcCCcCCCCCChHH
Confidence 99999999999843
No 16
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=2.5e-18 Score=180.28 Aligned_cols=169 Identities=22% Similarity=0.280 Sum_probs=113.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.-|+|||.||||||||||+|++.. ..+++.|.||+..+. |+...++.
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k---~~vs~~p~TT~~p~~-----------------------Giv~~~~~------- 206 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK---PKVADYPFTTLVPNL-----------------------GVVRVDDE------- 206 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc---ccccCCCCCccCcEE-----------------------EEEEeCCC-------
Confidence 379999999999999999999987 688999999987654 22221110
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCC---CCccHHHHHHHHHHhcC-----
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK---LDISDEFKRVITSLRGH----- 349 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~---~~~~~~~~~~l~~L~~~----- 349 (545)
..+.|+||||+..+..+.......| ...++++|++++++|++. .+..+....+++++...
T Consensus 207 --------~~i~~vDtPGi~~~a~~~~~Lg~~~----l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~ 274 (390)
T PRK12298 207 --------RSFVVADIPGLIEGASEGAGLGIRF----LKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLA 274 (390)
T ss_pred --------cEEEEEeCCCccccccchhhHHHHH----HHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhc
Confidence 2589999999987432211111111 134789999999999872 23345556666666553
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCC-ccEEEEeeccCCCccCc-----ccCCCccHHhhHHH
Q 009050 350 DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTP-EVVRVYIGSFNDKPVNE-----SAFGPLGKELFEKE 417 (545)
Q Consensus 350 ~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~-~v~~v~iSa~~~~~~~~-----~~~~~~~~~~f~~e 417 (545)
+.|+++|+||+|+.+.+++.+....+.. ..... .+ +++||+++.++++ ...+++.+++|+++
T Consensus 275 ~kP~IlVlNKiDl~~~~el~~~l~~l~~----~~~~~~~V--i~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~ 342 (390)
T PRK12298 275 EKPRWLVFNKIDLLDEEEAEERAKAIVE----ALGWEGPV--YLISAASGLGVKELCWDLMTFIEENPREEAEE 342 (390)
T ss_pred CCCEEEEEeCCccCChHHHHHHHHHHHH----HhCCCCCE--EEEECCCCcCHHHHHHHHHHHhhhCcccCCcc
Confidence 5799999999999876655444443321 11221 34 8999999999887 23345556666644
No 17
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.4e-18 Score=176.18 Aligned_cols=98 Identities=26% Similarity=0.446 Sum_probs=91.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHh
Q 009050 5 TGPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQ 84 (545)
Q Consensus 5 ~~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~ 84 (545)
-...|.||+++|+||.+.|+.+.+|-.|+|+|..|++||.||.||...|.+||.|||.++||.|+..|||.|||||-...
T Consensus 219 ~d~pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRk 298 (737)
T KOG1955|consen 219 LDTPWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARK 298 (737)
T ss_pred cCCccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccCCCCCC
Q 009050 85 DGHQVTHDLWNSDVDFQNL 103 (545)
Q Consensus 85 ~g~~~~~~l~~~~~~~~~l 103 (545)
||+++|..|+. .+++.-+
T Consensus 299 NgypLPe~LP~-~L~P~~l 316 (737)
T KOG1955|consen 299 NGYPLPESLPH-CLHPNVL 316 (737)
T ss_pred cCCCCCCCCcc-ccChhHh
Confidence 99999999877 4443333
No 18
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.1e-18 Score=182.45 Aligned_cols=102 Identities=25% Similarity=0.450 Sum_probs=96.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhC
Q 009050 6 GPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQD 85 (545)
Q Consensus 6 ~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~ 85 (545)
+-.|.+....+.+|+++|+.+|+..+|+++|.+|+..|..||||+.+|++||.|+|+|+||.|+.+||++|||||..+..
T Consensus 184 ~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~s 263 (1118)
T KOG1029|consen 184 LEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAKS 263 (1118)
T ss_pred hhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHhc
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCCCCCCCcccccch
Q 009050 86 GHQVTHDLWNSDVDFQNLKPPAMEGLDK 113 (545)
Q Consensus 86 g~~~~~~l~~~~~~~~~l~~p~~~~l~~ 113 (545)
|.++|..|++ .+.||++.++..
T Consensus 264 Gq~lP~tlP~------E~Vpp~~r~~rs 285 (1118)
T KOG1029|consen 264 GQPLPKTLPP------ELVPPSFRSSRS 285 (1118)
T ss_pred CCCCCCCCCh------hhcCcccccccC
Confidence 9999999877 788898887654
No 19
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.3e-16 Score=171.56 Aligned_cols=143 Identities=27% Similarity=0.363 Sum_probs=105.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~~ 277 (545)
.||++|+||+|||||+|+|+|.+ ..||+ +||+|+.... .+.+.|
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~---q~VgN------------------wpGvTVEkkeg~~~~~~-------------- 49 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGAN---QKVGN------------------WPGVTVEKKEGKLKYKG-------------- 49 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccC---ceecC------------------CCCeeEEEEEEEEEecC--------------
Confidence 59999999999999999999999 78888 7777774322 233333
Q ss_pred hcCchhhccCceeecCCCCCC----hhhhhhhhccChHHHHHHHh--cCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCC
Q 009050 278 SQMPHSLLEHITLVDTPGVLS----GEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDD 351 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~s----gekq~v~~~~~~~~ia~~~~--~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~ 351 (545)
+.+.++|.||++| .+.+. +++.++ .++|+|+.++|++++ ++...+.-+|.+.+.
T Consensus 50 --------~~i~ivDLPG~YSL~~~S~DE~---------Var~~ll~~~~D~ivnVvDAtnL---eRnLyltlQLlE~g~ 109 (653)
T COG0370 50 --------HEIEIVDLPGTYSLTAYSEDEK---------VARDFLLEGKPDLIVNVVDATNL---ERNLYLTLQLLELGI 109 (653)
T ss_pred --------ceEEEEeCCCcCCCCCCCchHH---------HHHHHHhcCCCCEEEEEcccchH---HHHHHHHHHHHHcCC
Confidence 3799999999998 23333 555554 678999999999983 566777788889999
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 352 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 352 ~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+++++|++|...++.+.--...+ .+.++ ++.+++||.+|+|+++
T Consensus 110 p~ilaLNm~D~A~~~Gi~ID~~~L----~~~LG---vPVv~tvA~~g~G~~~ 154 (653)
T COG0370 110 PMILALNMIDEAKKRGIRIDIEKL----SKLLG---VPVVPTVAKRGEGLEE 154 (653)
T ss_pred CeEEEeccHhhHHhcCCcccHHHH----HHHhC---CCEEEEEeecCCCHHH
Confidence 999999999987543221112222 23333 3447999999999876
No 20
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.68 E-value=1.6e-15 Score=142.82 Aligned_cols=160 Identities=18% Similarity=0.270 Sum_probs=100.6
Q ss_pred ccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhh
Q 009050 195 DAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSK 274 (545)
Q Consensus 195 ~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~ 274 (545)
...+.|+|+|.+|+|||||+|+|++.... ..+++.+.+|.....+. . +
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~-------------------~------~------ 63 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKL-ARTSKTPGRTQLINFFE-------------------V------N------ 63 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCc-ccccCCCCcceEEEEEE-------------------e------C------
Confidence 34458999999999999999999997621 34445444433221100 0 0
Q ss_pred hhhhcCchhhccCceeecCCCCCChh-hhhhhhccChHHHHHHHhc---CCCEEEEEeCCCCCCccHHHHHHHHHHhcCC
Q 009050 275 FECSQMPHSLLEHITLVDTPGVLSGE-KQRTQRAYDFTGVTSWFAA---KCDLILLLFDPHKLDISDEFKRVITSLRGHD 350 (545)
Q Consensus 275 ~~~~~~~~~lL~~v~liDTPG~~sge-kq~v~~~~~~~~ia~~~~~---~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~ 350 (545)
..+.++||||+.... .+... .++......++. .+|.+++++|+.. ++......+++.+...+
T Consensus 64 -----------~~~~liDtpG~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~~~ 129 (179)
T TIGR03598 64 -----------DGFRLVDLPGYGYAKVSKEEK--EKWQKLIEEYLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRERG 129 (179)
T ss_pred -----------CcEEEEeCCCCccccCChhHH--HHHHHHHHHHHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHHcC
Confidence 167899999975421 00000 012222333333 4689999999986 46666667777777778
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccC
Q 009050 351 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVN 402 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~ 402 (545)
.|+++|+||+|+.+..+.......+...++... .....+++||++|+|++
T Consensus 130 ~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~--~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 130 IPVLIVLTKADKLKKSELNKQLKKIKKALKKDA--DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc--CCCceEEEECCCCCCCC
Confidence 999999999999876555444444433333321 11233899999999874
No 21
>PRK09866 hypothetical protein; Provisional
Probab=99.67 E-value=1.9e-15 Score=161.92 Aligned_cols=110 Identities=20% Similarity=0.189 Sum_probs=75.1
Q ss_pred ccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCC--eEEEEecCCCC
Q 009050 285 LEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDD--KIRVVLNKADQ 362 (545)
Q Consensus 285 L~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~--~iiiVlNK~D~ 362 (545)
..++.|+||||+.+..+..+.+. ....+.++|+||+++|+.. .....+..+++.+++.++ |+++|+||+|.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~------M~eqL~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKM------LNQQLARASAVLAVLDYTQ-LKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHH------HHHHHhhCCEEEEEEeCCC-CCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 47899999999987433223322 2236899999999999986 345666778888877664 99999999999
Q ss_pred CCHHH--HHHHHHHHHHHhc-ccccCCccEEEEeeccCCCccCc
Q 009050 363 VDTQQ--LMRVYGALMWSLG-KVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 363 ~~~~~--l~~v~~~l~~~l~-k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.+..+ ...+...+...+. ....+.++ |+|||++|.+++.
T Consensus 302 ~dreeddkE~Lle~V~~~L~q~~i~f~eI--fPVSAlkG~nid~ 343 (741)
T PRK09866 302 QDRNSDDADQVRALISGTLMKGCITPQQI--FPVSSMWGYLANR 343 (741)
T ss_pred CCcccchHHHHHHHHHHHHHhcCCCCceE--EEEeCCCCCCHHH
Confidence 75211 2222222211122 23346667 8999999999887
No 22
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.66 E-value=1.3e-15 Score=147.13 Aligned_cols=189 Identities=21% Similarity=0.257 Sum_probs=114.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCC--------Cccc----ceEEEEeCCCccccCCceeEeec-CCCCCCcc
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPE--------PTTD----RFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLT 265 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~--------p~t~----r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~ 265 (545)
+|+|+|++|+|||||+|+|++..- .+++.. +.++ ....++.....+..+|+|+.... .+.+.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~-- 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSK--SIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK-- 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--
Confidence 489999999999999999998763 433211 1111 23344555555667788874322 121211
Q ss_pred cccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHH
Q 009050 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITS 345 (545)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~ 345 (545)
.++.|+||||... |...+...+..+|++|+|+|+.. +........+..
T Consensus 77 --------------------~~~~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~-~~~~~~~~~~~~ 124 (208)
T cd04166 77 --------------------RKFIIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARK-GVLEQTRRHSYI 124 (208)
T ss_pred --------------------ceEEEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCC-CccHhHHHHHHH
Confidence 3789999999732 11122344789999999999986 444455444444
Q ss_pred HhcCCC-eEEEEecCCCCCCH--HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCcccCCCccHHhhHHHHHHHH
Q 009050 346 LRGHDD-KIRVVLNKADQVDT--QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNESAFGPLGKELFEKEQDDLL 422 (545)
Q Consensus 346 L~~~~~-~iiiVlNK~D~~~~--~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~~~~~~~~~~~f~~e~e~ll 422 (545)
+...+. ++++|+||+|+... +....+...+ ..+.+.++...++.+++||++|.|+.+.. +...|++. ..++
T Consensus 125 ~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~ii~iSA~~g~ni~~~~--~~~~w~~g---~~~~ 198 (208)
T cd04166 125 LSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADY-LAFAAKLGIEDITFIPISALDGDNVVSRS--ENMPWYSG---PTLL 198 (208)
T ss_pred HHHcCCCcEEEEEEchhcccCCHHHHHHHHHHH-HHHHHHcCCCCceEEEEeCCCCCCCccCC--CCCCCCCC---CcHH
Confidence 444453 57889999999742 2222222222 11122233334445899999999998732 45677665 4455
Q ss_pred HHHhhch
Q 009050 423 SDLKDIP 429 (545)
Q Consensus 423 ~~l~~~~ 429 (545)
+.|...+
T Consensus 199 ~~~~~~~ 205 (208)
T cd04166 199 EHLETVP 205 (208)
T ss_pred HHHhcCC
Confidence 5555433
No 23
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.66 E-value=7.7e-16 Score=142.97 Aligned_cols=154 Identities=19% Similarity=0.252 Sum_probs=94.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|+|.|.. ..++..|.++....... ..+.+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~---~~v~~~~~~t~~~~~~~-----------------~~~~~~-------------- 47 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK---PKIADYPFTTLVPNLGV-----------------VRVDDG-------------- 47 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC---ccccCCCccccCCcceE-----------------EEcCCC--------------
Confidence 38999999999999999999876 45555554443221100 000010
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCC-CccHHHHHHHHHHhc-----CCCe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL-DISDEFKRVITSLRG-----HDDK 352 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~-~~~~~~~~~l~~L~~-----~~~~ 352 (545)
..+.|+||||+..+...... + .......+..+|++++++|++.. ...+....+++.+.. .+.|
T Consensus 48 -------~~~~l~DtpG~~~~~~~~~~--~--~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 116 (170)
T cd01898 48 -------RSFVVADIPGLIEGASEGKG--L--GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKP 116 (170)
T ss_pred -------CeEEEEecCcccCcccccCC--c--hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccc
Confidence 27889999998642211100 0 00112235679999999999874 334555566666543 2578
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+.....+....+. .+. . ....+.+||+.+.|+++
T Consensus 117 ~ivv~NK~Dl~~~~~~~~~~~~~~---~~~-~--~~~~~~~Sa~~~~gi~~ 161 (170)
T cd01898 117 RIVVLNKIDLLDEEELFELLKELL---KEL-W--GKPVFPISALTGEGLDE 161 (170)
T ss_pred cEEEEEchhcCCchhhHHHHHHHH---hhC-C--CCCEEEEecCCCCCHHH
Confidence 999999999986554433332221 111 1 12237899999998775
No 24
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=2.2e-16 Score=147.80 Aligned_cols=168 Identities=24% Similarity=0.325 Sum_probs=126.0
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCC-C------cccceEEEEeCCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPE-P------TTDRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~-p------~t~r~~i~~~~~~ 244 (545)
+.+.|++++ ++++++++... +|+|+||+|||||||+++|.+.+.+ |.+ +.+. . ..-|..+.|.+|+
T Consensus 8 l~K~fg~~~--VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~ 85 (240)
T COG1126 8 LSKSFGDKE--VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQ 85 (240)
T ss_pred eeEEeCCeE--EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccc
Confidence 445788865 99999998877 9999999999999999999999965 211 1111 1 1124456788888
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
+...|..|+..+.... .+...+ .++.+....+.++|+.+.|.| .|+.+| |++||++ |||+++-
T Consensus 86 fnLFPHlTvleNv~la--p~~v~~---~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVA-------IARALaM 153 (240)
T COG1126 86 FNLFPHLTVLENVTLA--PVKVKK---LSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVA-------IARALAM 153 (240)
T ss_pred ccccccchHHHHHHhh--hHHHcC---CCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHH-------HHHHHcC
Confidence 8888877763322211 111111 234466677888999999988 899999 7999999 9999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+|+++|| .+||. ...++..++..|.+.|.+.++|.|-+.
T Consensus 154 ~P~vmLFDEPTSALDPE---lv~EVL~vm~~LA~eGmTMivVTHEM~ 197 (240)
T COG1126 154 DPKVMLFDEPTSALDPE---LVGEVLDVMKDLAEEGMTMIIVTHEMG 197 (240)
T ss_pred CCCEEeecCCcccCCHH---HHHHHHHHHHHHHHcCCeEEEEechhH
Confidence 9999999 66664 467899999999999999999999544
No 25
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=4.5e-15 Score=159.36 Aligned_cols=160 Identities=22% Similarity=0.285 Sum_probs=110.8
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+++|.+|+|||||+|+|+|.+. ..+++.++|++..+... +.+.+
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~--~~~~~~~gtt~~~~~~~-----------------~~~~~------------- 220 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEER--VIVSDIAGTTRDSIDTP-----------------FERDG------------- 220 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCceEEEEEEE-----------------EEECC-------------
Confidence 35899999999999999999999987 77888777776654211 00111
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHH--HHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGV--TSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR 354 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~i--a~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ii 354 (545)
..+.++||||+....+ +....++... +...+..+|++|+++|+.. +.+.....++..+...+.|++
T Consensus 221 ---------~~~~lvDT~G~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~-~~~~~~~~i~~~~~~~~~~~i 288 (435)
T PRK00093 221 ---------QKYTLIDTAGIRRKGK--VTEGVEKYSVIRTLKAIERADVVLLVIDATE-GITEQDLRIAGLALEAGRALV 288 (435)
T ss_pred ---------eeEEEEECCCCCCCcc--hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCcEE
Confidence 2688999999865211 1111111111 2345789999999999987 577778888888877889999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.+...++...+...+.. .. .++.+++||++|.|+++
T Consensus 289 vv~NK~Dl~~~~~~~~~~~~~~~~l~~-~~--~~~i~~~SA~~~~gv~~ 334 (435)
T PRK00093 289 IVVNKWDLVDEKTMEEFKKELRRRLPF-LD--YAPIVFISALTGQGVDK 334 (435)
T ss_pred EEEECccCCCHHHHHHHHHHHHHhccc-cc--CCCEEEEeCCCCCCHHH
Confidence 999999998655444444433222222 22 23448999999999875
No 26
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=3e-15 Score=161.98 Aligned_cols=159 Identities=20% Similarity=0.251 Sum_probs=105.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.|+++|++|||||||+|+|+|... ..+++.|+||+..+... +.+.+
T Consensus 212 ~kI~iiG~~nvGKSSLin~l~~~~~--~~~s~~~gtT~d~~~~~-----------------~~~~~-------------- 258 (472)
T PRK03003 212 RRVALVGKPNVGKSSLLNKLAGEER--SVVDDVAGTTVDPVDSL-----------------IELGG-------------- 258 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCccCCcceEE-----------------EEECC--------------
Confidence 5899999999999999999999986 67788777776543100 00111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHH--HHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGV--TSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~i--a~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..+.|+||||+....+ ......+... +..++.++|++++|+|++. +.+.....++..+...+.|+++
T Consensus 259 --------~~~~l~DTaG~~~~~~--~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~-~~s~~~~~~~~~~~~~~~piIi 327 (472)
T PRK03003 259 --------KTWRFVDTAGLRRRVK--QASGHEYYASLRTHAAIEAAEVAVVLIDASE-PISEQDQRVLSMVIEAGRALVL 327 (472)
T ss_pred --------EEEEEEECCCcccccc--ccchHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEE
Confidence 2578999999853111 0000011111 2345789999999999987 5667777788888778899999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+.+........+...+... .. .+.+++||++|.|+++
T Consensus 328 V~NK~Dl~~~~~~~~~~~~i~~~l~~~-~~--~~~~~~SAk~g~gv~~ 372 (472)
T PRK03003 328 AFNKWDLVDEDRRYYLEREIDRELAQV-PW--APRVNISAKTGRAVDK 372 (472)
T ss_pred EEECcccCChhHHHHHHHHHHHhcccC-CC--CCEEEEECCCCCCHHH
Confidence 999999986433222222221122221 22 2347999999999885
No 27
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=1.1e-15 Score=157.35 Aligned_cols=154 Identities=21% Similarity=0.292 Sum_probs=100.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+-|+|||.||||||||||+|++.. ..+++.|.||..... |...+...
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~---~~va~ypfTT~~p~~-----------------------G~v~~~~~------- 205 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK---PKIADYPFTTLHPNL-----------------------GVVRVDDY------- 205 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC---CccCCCCCceeCceE-----------------------EEEEeCCC-------
Confidence 479999999999999999999977 567887877665432 11111000
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc-----CCCe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-----HDDK 352 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~-----~~~~ 352 (545)
..+.++||||+..+..+.......| ...++++|++++|+|++..+..+....+...|.. .+.|
T Consensus 206 --------~~~~i~D~PGli~ga~~~~gLg~~f----lrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp 273 (335)
T PRK12299 206 --------KSFVIADIPGLIEGASEGAGLGHRF----LKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKP 273 (335)
T ss_pred --------cEEEEEeCCCccCCCCccccHHHHH----HHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCC
Confidence 2689999999987433221111111 2236789999999999864434555566666654 2579
Q ss_pred EEEEecCCCCCCHHHHHHH-HHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v-~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+..+.... ..... +.. ....+++||++++++++
T Consensus 274 ~IIV~NKiDL~~~~~~~~~~~~~~~----~~~---~~~i~~iSAktg~GI~e 318 (335)
T PRK12299 274 RILVLNKIDLLDEEEEREKRAALEL----AAL---GGPVFLISAVTGEGLDE 318 (335)
T ss_pred eEEEEECcccCCchhHHHHHHHHHH----Hhc---CCCEEEEEcCCCCCHHH
Confidence 9999999999865433221 11111 111 12238999999999885
No 28
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.64 E-value=3.4e-15 Score=136.89 Aligned_cols=155 Identities=25% Similarity=0.375 Sum_probs=102.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.+|+++|++|||||||+|+|+|... ..+++.+.+++..... ....+.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~--~~~~~~~~~~~~~~~~-----------------------~~~~~~-------- 50 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRG-----------------------IYTDDD-------- 50 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCce--EeccCCCCceeceEEE-----------------------EEEcCC--------
Confidence 4799999999999999999999886 5555555444332210 000000
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..+.++||||..........+ +...+...+..+|++++++|++.. .......++..+...+.|+++|+
T Consensus 51 --------~~~~liDtpG~~~~~~~~~~~---~~~~~~~~~~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~~~~~iiv~ 118 (168)
T cd04163 51 --------AQIIFVDTPGIHKPKKKLGER---MVKAAWSALKDVDLVLFVVDASEP-IGEGDEFILELLKKSKTPVILVL 118 (168)
T ss_pred --------eEEEEEECCCCCcchHHHHHH---HHHHHHHHHHhCCEEEEEEECCCc-cCchHHHHHHHHHHhCCCEEEEE
Confidence 267899999987643221111 222345568899999999999873 34555566677777778999999
Q ss_pred cCCCCC-CHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQV-DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~-~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+. ..+.+.+....+ ........+ +.+|++.+.++++
T Consensus 119 nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~--~~~s~~~~~~~~~ 159 (168)
T cd04163 119 NKIDLVKDKEDLLPLLEKL----KELGPFAEI--FPISALKGENVDE 159 (168)
T ss_pred EchhccccHHHHHHHHHHH----HhccCCCce--EEEEeccCCChHH
Confidence 999998 444444444433 222222334 7899999998774
No 29
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=8.5e-15 Score=136.56 Aligned_cols=161 Identities=20% Similarity=0.259 Sum_probs=111.2
Q ss_pred ccccccCceEEEEcCCCCChHHHHHHHHccc-CCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccc
Q 009050 191 NSDFDAKPMVMLLGQYSTGKTTFIKHLLRTS-YPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGT 269 (545)
Q Consensus 191 ~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~-~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~ 269 (545)
+..-+..+-|+++|++|+|||||||+|+|.. . +.+|..|+.|+..-.+.-.
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~L--ArtSktPGrTq~iNff~~~-------------------------- 69 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNL--ARTSKTPGRTQLINFFEVD-------------------------- 69 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcce--eecCCCCCccceeEEEEec--------------------------
Confidence 3334456689999999999999999999965 5 7889988777655331110
Q ss_pred cchhhhhhhcCchhhccCceeecCCCCCC--h---hhhhhhhccChHHHHHHHh-cCC--CEEEEEeCCCCCCccHHHHH
Q 009050 270 AFLSKFECSQMPHSLLEHITLVDTPGVLS--G---EKQRTQRAYDFTGVTSWFA-AKC--DLILLLFDPHKLDISDEFKR 341 (545)
Q Consensus 270 ~~~~~~~~~~~~~~lL~~v~liDTPG~~s--g---ekq~v~~~~~~~~ia~~~~-~~a--DliLlvlD~~~~~~~~~~~~ 341 (545)
..+.|||.||+.- + +++...+ ....++ .++ .++++++|+.+ ...+.+.+
T Consensus 70 ----------------~~~~lVDlPGYGyAkv~k~~~e~w~~------~i~~YL~~R~~L~~vvlliD~r~-~~~~~D~e 126 (200)
T COG0218 70 ----------------DELRLVDLPGYGYAKVPKEVKEKWKK------LIEEYLEKRANLKGVVLLIDARH-PPKDLDRE 126 (200)
T ss_pred ----------------CcEEEEeCCCcccccCCHHHHHHHHH------HHHHHHhhchhheEEEEEEECCC-CCcHHHHH
Confidence 2588999999864 1 2222221 223333 334 45667999998 56777889
Q ss_pred HHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 342 VITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 342 ~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++.+...+.|+++|+||+|.++..+..+....+...+........ ..+..|+..+.|+++
T Consensus 127 m~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~-~~~~~ss~~k~Gi~~ 187 (200)
T COG0218 127 MIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQ-WVVLFSSLKKKGIDE 187 (200)
T ss_pred HHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccc-eEEEEecccccCHHH
Confidence 9999999999999999999999876665544444333333333221 137888999888764
No 30
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.63 E-value=1.7e-15 Score=132.23 Aligned_cols=116 Identities=29% Similarity=0.442 Sum_probs=83.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|++|||||||+|+|+|.+. ..++..+.+|+........ +.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~--~~~~~~~~~T~~~~~~~~~-----------------~~~--------------- 46 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKL--AKVSNIPGTTRDPVYGQFE-----------------YNN--------------- 46 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTS--SEESSSTTSSSSEEEEEEE-----------------ETT---------------
T ss_pred CEEEECCCCCCHHHHHHHHhcccc--ccccccccceeeeeeeeee-----------------ece---------------
Confidence 489999999999999999999876 7788888777766321100 001
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
..+.|+||||+.++..+..... .+....+. +..+|++++++|+.+ ...+...++++.++ .+.|+++|+|
T Consensus 47 -------~~~~~vDtpG~~~~~~~~~~~~-~~~~~~~~-~~~~d~ii~vv~~~~-~~~~~~~~~~~~l~-~~~~~i~v~N 115 (116)
T PF01926_consen 47 -------KKFILVDTPGINDGESQDNDGK-EIRKFLEQ-ISKSDLIIYVVDASN-PITEDDKNILRELK-NKKPIILVLN 115 (116)
T ss_dssp -------EEEEEEESSSCSSSSHHHHHHH-HHHHHHHH-HCTESEEEEEEETTS-HSHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred -------eeEEEEeCCCCcccchhhHHHH-HHHHHHHH-HHHCCEEEEEEECCC-CCCHHHHHHHHHHh-cCCCEEEEEc
Confidence 2678999999987533322100 01112333 499999999999876 44566778888887 7899999999
Q ss_pred C
Q 009050 359 K 359 (545)
Q Consensus 359 K 359 (545)
|
T Consensus 116 K 116 (116)
T PF01926_consen 116 K 116 (116)
T ss_dssp S
T ss_pred C
Confidence 8
No 31
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.62 E-value=3.2e-15 Score=153.74 Aligned_cols=154 Identities=21% Similarity=0.299 Sum_probs=100.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+-|+|+|.||||||||+|+|++.. ..++..|.||....+ |...++..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~---~~va~y~fTT~~p~i-----------------------g~v~~~~~------- 204 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK---PKIADYPFTTLVPNL-----------------------GVVRVDDG------- 204 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC---ccccCCCCCccCCEE-----------------------EEEEeCCc-------
Confidence 479999999999999999999987 567777776654332 11111100
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCC---CccHHHHHHHHHHhc-----C
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL---DISDEFKRVITSLRG-----H 349 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~---~~~~~~~~~l~~L~~-----~ 349 (545)
.++.|+||||+..+..+...... .....++++|++|+|+|++.. +..+.+..+.+++.. .
T Consensus 205 --------~~~~i~D~PGli~~a~~~~gLg~----~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~ 272 (329)
T TIGR02729 205 --------RSFVIADIPGLIEGASEGAGLGH----RFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELA 272 (329)
T ss_pred --------eEEEEEeCCCcccCCcccccHHH----HHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhc
Confidence 27899999999864322111111 112236789999999999863 233445555555543 2
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 350 DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 350 ~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+.|+++|+||+|+.+.....+....+... .. ...+++||++++++++
T Consensus 273 ~kp~IIV~NK~DL~~~~~~~~~~~~l~~~----~~---~~vi~iSAktg~GI~e 319 (329)
T TIGR02729 273 EKPRIVVLNKIDLLDEEELAELLKELKKA----LG---KPVFPISALTGEGLDE 319 (329)
T ss_pred cCCEEEEEeCccCCChHHHHHHHHHHHHH----cC---CcEEEEEccCCcCHHH
Confidence 57999999999998765544444333211 11 2238999999999875
No 32
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=4.4e-15 Score=160.72 Aligned_cols=153 Identities=23% Similarity=0.330 Sum_probs=105.5
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
..+.|+|+|.+|||||||+|+|+|... +.+++.|++|+..+.... .+.+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~--~~v~~~~gvT~d~~~~~~-----------------~~~~------------ 85 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRRE--AVVEDVPGVTRDRVSYDA-----------------EWNG------------ 85 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCc--ccccCCCCCCEeeEEEEE-----------------EECC------------
Confidence 346899999999999999999999876 677887777765543110 0111
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..+.++||||+..... .+.. .+...+..++..+|++|+|+|++. +.+..+..+...++..+.|+++
T Consensus 86 ----------~~~~l~DT~G~~~~~~-~~~~--~~~~~~~~~~~~aD~il~VvD~~~-~~s~~~~~i~~~l~~~~~piil 151 (472)
T PRK03003 86 ----------RRFTVVDTGGWEPDAK-GLQA--SVAEQAEVAMRTADAVLFVVDATV-GATATDEAVARVLRRSGKPVIL 151 (472)
T ss_pred ----------cEEEEEeCCCcCCcch-hHHH--HHHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEE
Confidence 2678999999853111 1111 122345567899999999999987 4555667778888878899999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+..... +. ..++.++ ...+ +++||++|.|+++
T Consensus 152 V~NK~Dl~~~~~--~~--~~~~~~g----~~~~--~~iSA~~g~gi~e 189 (472)
T PRK03003 152 AANKVDDERGEA--DA--AALWSLG----LGEP--HPVSALHGRGVGD 189 (472)
T ss_pred EEECccCCccch--hh--HHHHhcC----CCCe--EEEEcCCCCCcHH
Confidence 999999864321 11 1122222 2334 7899999999887
No 33
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.62 E-value=9.1e-15 Score=165.10 Aligned_cols=153 Identities=20% Similarity=0.236 Sum_probs=100.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|+||||||||+|+|+|.. ..+++.|.+|..... ..+.+.+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~---~~vgn~pGvTve~k~-----------------g~~~~~~-------------- 49 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR---QRVGNWAGVTVERKE-----------------GQFSTTD-------------- 49 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC---CccCCCCCceEeeEE-----------------EEEEcCc--------------
Confidence 379999999999999999999987 667775555543221 0011111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHH--hcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWF--AAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~--~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..+.++||||+.+-....-....+ +.+++.+ .+++|++++++|+++. ++...+..++.+.+.|+++
T Consensus 50 --------~~i~lvDtPG~ysl~~~~~~~s~~-E~i~~~~l~~~~aD~vI~VvDat~l---er~l~l~~ql~e~giPvIv 117 (772)
T PRK09554 50 --------HQVTLVDLPGTYSLTTISSQTSLD-EQIACHYILSGDADLLINVVDASNL---ERNLYLTLQLLELGIPCIV 117 (772)
T ss_pred --------eEEEEEECCCccccccccccccHH-HHHHHHHHhccCCCEEEEEecCCcc---hhhHHHHHHHHHcCCCEEE
Confidence 378999999997611000000000 1133433 3589999999999873 4455677788888999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|..+..........+ .+.++. +.+++||.+++|+++
T Consensus 118 VlNK~Dl~~~~~i~id~~~L----~~~LG~---pVvpiSA~~g~GIde 158 (772)
T PRK09554 118 ALNMLDIAEKQNIRIDIDAL----SARLGC---PVIPLVSTRGRGIEA 158 (772)
T ss_pred EEEchhhhhccCcHHHHHHH----HHHhCC---CEEEEEeecCCCHHH
Confidence 99999987543332223333 222222 337999999999876
No 34
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.62 E-value=1.1e-14 Score=156.24 Aligned_cols=159 Identities=21% Similarity=0.275 Sum_probs=108.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|+|||||+|+|+|.+. ..+++.+.|++..+... +.+.+
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~--~~~~~~~gtt~~~~~~~-----------------~~~~~-------------- 219 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEER--VIVSDIAGTTRDSIDIP-----------------FERNG-------------- 219 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCe--eecCCCCCceECcEeEE-----------------EEECC--------------
Confidence 4799999999999999999999886 67777777765543210 00111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHH--HHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTG--VTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~--ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..+.++||||+....+ +....++.. -+...+..+|++|+|+|+.. +.+.....++..+...+.|+++
T Consensus 220 --------~~~~liDT~G~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~~~~iii 288 (429)
T TIGR03594 220 --------KKYLLIDTAGIRRKGK--VTEGVEKYSVLRTLKAIERADVVLLVLDATE-GITEQDLRIAGLILEAGKALVI 288 (429)
T ss_pred --------cEEEEEECCCcccccc--chhhHHHHHHHHHHHHHHhCCEEEEEEECCC-CccHHHHHHHHHHHHcCCcEEE
Confidence 2678999999864211 111111111 12345799999999999987 5677777888888778899999
Q ss_pred EecCCCCC-CHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQV-DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~-~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+. +.+...++...+...+.. .. .++.+++||++|.|+++
T Consensus 289 v~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~--~~~vi~~SA~~g~~v~~ 334 (429)
T TIGR03594 289 VVNKWDLVKDEKTREEFKKELRRKLPF-LD--FAPIVFISALTGQGVDK 334 (429)
T ss_pred EEECcccCCCHHHHHHHHHHHHHhccc-CC--CCceEEEeCCCCCCHHH
Confidence 99999998 444444444443222221 12 23448999999999875
No 35
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.61 E-value=1.2e-14 Score=164.64 Aligned_cols=159 Identities=20% Similarity=0.238 Sum_probs=106.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.|+|+|.+|||||||+|+|+|.+. ..++..|+||+..+... +.+.+
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~--~~v~~~~gtT~d~~~~~-----------------~~~~~-------------- 497 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEER--AVVNDLAGTTRDPVDEI-----------------VEIDG-------------- 497 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccc--cccCCCCCCCcCcceeE-----------------EEECC--------------
Confidence 5899999999999999999999987 67788777776543200 00111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHH--HHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTG--VTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~--ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..+.|+||||+....+.. ....+.. .+...+.++|++++++|++. +.+.....++..+...+.|+++
T Consensus 498 --------~~~~liDTaG~~~~~~~~--~~~e~~~~~r~~~~i~~advvilViDat~-~~s~~~~~i~~~~~~~~~piIi 566 (712)
T PRK09518 498 --------EDWLFIDTAGIKRRQHKL--TGAEYYSSLRTQAAIERSELALFLFDASQ-PISEQDLKVMSMAVDAGRALVL 566 (712)
T ss_pred --------CEEEEEECCCcccCcccc--hhHHHHHHHHHHHHhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEE
Confidence 267799999986421111 0011111 13345789999999999987 5667777788877778899999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+..........+...+ ....+..+ +++||++|.|+++
T Consensus 567 V~NK~DL~~~~~~~~~~~~~~~~l-~~~~~~~i--i~iSAktg~gv~~ 611 (712)
T PRK09518 567 VFNKWDLMDEFRRQRLERLWKTEF-DRVTWARR--VNLSAKTGWHTNR 611 (712)
T ss_pred EEEchhcCChhHHHHHHHHHHHhc-cCCCCCCE--EEEECCCCCCHHH
Confidence 999999986543222222221111 11233333 7999999999875
No 36
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=4.1e-15 Score=158.87 Aligned_cols=153 Identities=23% Similarity=0.299 Sum_probs=97.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|||.||||||||||+|++.. ..++..|.||+.... |....+.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak---pkIadypfTTl~P~l-----------------------Gvv~~~~-------- 205 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK---PKIADYPFTTLVPNL-----------------------GVVQAGD-------- 205 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC---ccccccCcccccceE-----------------------EEEEECC--------
Confidence 489999999999999999999987 566887877765432 1111111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCC----CccHHHHHHHHHHh------
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL----DISDEFKRVITSLR------ 347 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~----~~~~~~~~~l~~L~------ 347 (545)
.++.|+||||+..+..+.......| ...++++|+||+|+|++.. +....+..+..+|.
T Consensus 206 --------~~f~laDtPGliegas~g~gLg~~f----LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l 273 (500)
T PRK12296 206 --------TRFTVADVPGLIPGASEGKGLGLDF----LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPAL 273 (500)
T ss_pred --------eEEEEEECCCCccccchhhHHHHHH----HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcc
Confidence 2689999999986433221111111 2246899999999999742 11122222333332
Q ss_pred --------cCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 348 --------GHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 348 --------~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
-.+.|+++|+||+|+.+..++.+..... +.+. ....++|||+++.|+++
T Consensus 274 ~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~---l~~~----g~~Vf~ISA~tgeGLdE 330 (500)
T PRK12296 274 DGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPE---LEAR----GWPVFEVSAASREGLRE 330 (500)
T ss_pred cccchhhhhcCCCEEEEEECccchhhHHHHHHHHHH---HHHc----CCeEEEEECCCCCCHHH
Confidence 1357999999999997655443332221 1111 12348999999999886
No 37
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=9.1e-15 Score=144.75 Aligned_cols=153 Identities=24% Similarity=0.363 Sum_probs=106.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
.+.|+|.|.||+|||||++.|++.+ ..+.+.|.||+...+.|+. ..+
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Ak---pEvA~YPFTTK~i~vGhfe-----------------~~~------------- 214 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAK---PEVAPYPFTTKGIHVGHFE-----------------RGY------------- 214 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCC---CccCCCCccccceeEeeee-----------------cCC-------------
Confidence 3689999999999999999999999 7889999999988764433 111
Q ss_pred hhcCchhhccCceeecCCCCCC---hhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCC-CCcc-HHHHHHHHHHhcC-C
Q 009050 277 CSQMPHSLLEHITLVDTPGVLS---GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK-LDIS-DEFKRVITSLRGH-D 350 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~s---gekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~-~~~~-~~~~~~l~~L~~~-~ 350 (545)
.++.++||||+++ .|+..+++. .+.++-.=.++|||++|++. .+.+ ++-..++.+++.. .
T Consensus 215 ---------~R~QvIDTPGlLDRPl~ErN~IE~q-----Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~ 280 (346)
T COG1084 215 ---------LRIQVIDTPGLLDRPLEERNEIERQ-----AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK 280 (346)
T ss_pred ---------ceEEEecCCcccCCChHHhcHHHHH-----HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC
Confidence 2889999999998 344444421 12334456789999999986 2222 3445677777654 4
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 351 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.|+++|+||+|..+.+.+.+....+ ...+ ..+. ..+++..+.+++.
T Consensus 281 ~p~v~V~nK~D~~~~e~~~~~~~~~-~~~~----~~~~--~~~~~~~~~~~d~ 326 (346)
T COG1084 281 APIVVVINKIDIADEEKLEEIEASV-LEEG----GEEP--LKISATKGCGLDK 326 (346)
T ss_pred CCeEEEEecccccchhHHHHHHHHH-Hhhc----cccc--cceeeeehhhHHH
Confidence 6899999999999877766654432 1111 1222 4566777766553
No 38
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.61 E-value=7.1e-15 Score=138.52 Aligned_cols=166 Identities=20% Similarity=0.192 Sum_probs=98.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+|+|.+|||||||+|+|++... ........++. .+.........|.+..... ...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 60 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTG--DIERDGTVEET---FLDVLKEERERGITIKSGVATFEWP--------------- 60 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcC--CCCcCCceecc---cccCCHHHHHcCCCeecceEEEeeC---------------
Confidence 389999999999999999999875 22111111110 0000111112222221000 00000
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
-..+.|+||||..+- .......+..+|++++++|+.. +......+++..+...+.|+++|+
T Consensus 61 -------~~~~~liDtpG~~~~-----------~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~i~iv~ 121 (189)
T cd00881 61 -------DRRVNFIDTPGHEDF-----------SSEVIRGLSVSDGAILVVDANE-GVQPQTREHLRIAREGGLPIIVAI 121 (189)
T ss_pred -------CEEEEEEeCCCcHHH-----------HHHHHHHHHhcCEEEEEEECCC-CCcHHHHHHHHHHHHCCCCeEEEE
Confidence 037899999997431 1134455789999999999986 345566677777776789999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccc----------cCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVL----------NTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~----------~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+...+++......+...+.... .....+.+++||+.|.|+++
T Consensus 122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~ 177 (189)
T cd00881 122 NKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEE 177 (189)
T ss_pred ECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHH
Confidence 99999875444433333322222221 11234458899999998775
No 39
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.60 E-value=3.1e-15 Score=155.26 Aligned_cols=148 Identities=22% Similarity=0.314 Sum_probs=96.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCC-CCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPF-SGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~-~gl~~~~~~~~~~~~ 276 (545)
+.|+|+|.+|||||||+|+|+|.. ..+++.+.||+...... ..+ .+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~---~~v~~~~~tT~d~~~~~-----------------i~~~~~------------- 236 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD---VYAADQLFATLDPTTRR-----------------LDLPDG------------- 236 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc---eeeccCCccccCCEEEE-----------------EEeCCC-------------
Confidence 689999999999999999999987 56667666655433200 001 01
Q ss_pred hhcCchhhccCceeecCCCCCCh-hhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHH---HHHHHHHhcCCCe
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSG-EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF---KRVITSLRGHDDK 352 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sg-ekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~---~~~l~~L~~~~~~ 352 (545)
..+.|+||||+... ....+.. |. -+...+.++|++|+|+|+++....+.. .++++.+...+.|
T Consensus 237 ---------~~i~l~DT~G~~~~l~~~lie~---f~-~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p 303 (351)
T TIGR03156 237 ---------GEVLLTDTVGFIRDLPHELVAA---FR-ATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP 303 (351)
T ss_pred ---------ceEEEEecCcccccCCHHHHHH---HH-HHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC
Confidence 26889999998542 1112221 21 233457899999999999874333333 2445555445689
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+..++.. .. .. ... .+++||++|.|+++
T Consensus 304 iIlV~NK~Dl~~~~~v~~----~~---~~---~~~--~i~iSAktg~GI~e 342 (351)
T TIGR03156 304 QLLVYNKIDLLDEPRIER----LE---EG---YPE--AVFVSAKTGEGLDL 342 (351)
T ss_pred EEEEEEeecCCChHhHHH----HH---hC---CCC--EEEEEccCCCCHHH
Confidence 999999999986543321 10 11 122 38999999999875
No 40
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.60 E-value=1.4e-14 Score=134.10 Aligned_cols=159 Identities=19% Similarity=0.314 Sum_probs=100.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|+|||||+|+|++... ..++..+.+++..... .....+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~-----------------~~~~~~-------------- 49 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEER--VIVSDIAGTTRDSIDV-----------------PFEYDG-------------- 49 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccc--eeccCCCCCccCceee-----------------EEEECC--------------
Confidence 3799999999999999999999875 5555555554333210 000011
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccC-hH-HHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYD-FT-GVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~-~~-~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..+.++||||...... .....+ +. .-+...+..+|++++++|+.. ..+.....++..+...+.|+++
T Consensus 50 --------~~~~iiDtpG~~~~~~--~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~~ii 118 (174)
T cd01895 50 --------KKYTLIDTAGIRRKGK--VEEGIEKYSVLRTLKAIERADVVLLVIDATE-GITEQDLRIAGLILEEGKALVI 118 (174)
T ss_pred --------eeEEEEECCCCccccc--hhccHHHHHHHHHHHHHhhcCeEEEEEeCCC-CcchhHHHHHHHHHhcCCCEEE
Confidence 2578999999864210 000000 00 012234679999999999987 3445555666666667789999
Q ss_pred EecCCCCCCH--HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDT--QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~--~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+. .....+...+...++. . ...+.+++||+.+.|+.+
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~Sa~~~~~i~~ 165 (174)
T cd01895 119 VVNKWDLVEKDSKTMKEFKKEIRRKLPF-L--DYAPIVFISALTGQGVDK 165 (174)
T ss_pred EEeccccCCccHHHHHHHHHHHHhhccc-c--cCCceEEEeccCCCCHHH
Confidence 9999999865 4444444443222221 1 123348999999998775
No 41
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.60 E-value=7.6e-15 Score=136.08 Aligned_cols=154 Identities=21% Similarity=0.331 Sum_probs=92.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
|.|+++|.+|||||||+|+|++... .+++.+.++...... ...+.+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~---~~~~~~~~t~~~~~~-----------------~~~~~~-------------- 46 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP---EVAPYPFTTKSLFVG-----------------HFDYKY-------------- 46 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC---ccCCCCCcccceeEE-----------------EEccCc--------------
Confidence 4689999999999999999999874 334433333222110 000111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCc--cHHHHHHHHHHhcC--CCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDI--SDEFKRVITSLRGH--DDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~--~~~~~~~l~~L~~~--~~~i 353 (545)
..+.|+||||+.....+. ...+.+. ........+|++|+++|++.... .+....++..++.. +.|+
T Consensus 47 --------~~~~i~Dt~G~~~~~~~~-~~~~~~~-~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pv 116 (168)
T cd01897 47 --------LRWQVIDTPGLLDRPLEE-RNTIEMQ-AITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPV 116 (168)
T ss_pred --------eEEEEEECCCcCCccccC-CchHHHH-HHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCe
Confidence 278999999985421000 0001111 11122344789999999986321 13345667777654 7899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+...+.. ...+ .+ ....+.+++||++|.|+++
T Consensus 117 ilv~NK~Dl~~~~~~~~-~~~~----~~---~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 117 IVVLNKIDLLTFEDLSE-IEEE----EE---LEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred EEEEEccccCchhhHHH-HHHh----hh---hccCceEEEEecccCCHHH
Confidence 99999999987554433 1111 11 1223348999999999885
No 42
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.60 E-value=4.3e-15 Score=138.14 Aligned_cols=152 Identities=25% Similarity=0.357 Sum_probs=97.4
Q ss_pred EEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCcee--EeecCCCCCCcccccccchhhh--
Q 009050 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV--AVQADMPFSGLTTFGTAFLSKF-- 275 (545)
Q Consensus 200 V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~--~~~~~~~~~gl~~~~~~~~~~~-- 275 (545)
|+++|+.+||||||||+|+|..+ .+++..|+|...+.+.+++.......... ..+....+..+......+....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~i--lp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPI--LPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDS 78 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS---SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhccc--CcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccc
Confidence 78999999999999999999998 88999999999999988876554322111 1111111111111111110000
Q ss_pred ------------hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHH
Q 009050 276 ------------ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVI 343 (545)
Q Consensus 276 ------------~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l 343 (545)
............+.|+||||+.+...... .++..++..+|++|+|+++.......+...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~ 151 (168)
T PF00350_consen 79 IEGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLK 151 (168)
T ss_dssp HHTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHH
T ss_pred ccccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHH
Confidence 01112234557899999999987433322 26778889999999999999833334444555
Q ss_pred HHHhcCCCeEEEEecCC
Q 009050 344 TSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 344 ~~L~~~~~~iiiVlNK~ 360 (545)
+.+......+++|+||+
T Consensus 152 ~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 152 QMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHTTTCSSEEEEEE-G
T ss_pred HHhcCCCCeEEEEEcCC
Confidence 55666667899999985
No 43
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.60 E-value=1.5e-14 Score=133.09 Aligned_cols=153 Identities=23% Similarity=0.235 Sum_probs=87.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+++|++|||||||+|+|+|... ....... .+++|+.... ...+.+ +
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~--~~~~~~~----------------~~~~t~~~~~~~~~~~~----~--------- 50 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIET--DRLPEEK----------------KRGITIDLGFAYLDLPS----G--------- 50 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCccc--ccchhhh----------------ccCceEEeeeEEEEecC----C---------
Confidence 589999999999999999998652 1111100 1122211100 000100 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCC-eEEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDD-KIRVV 356 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~-~iiiV 356 (545)
..+.+|||||... |.......+..+|++++++|++. +...+..+.+..+...+. |+++|
T Consensus 51 --------~~~~~~DtpG~~~-----------~~~~~~~~~~~ad~ii~V~d~~~-~~~~~~~~~~~~~~~~~~~~~ilv 110 (164)
T cd04171 51 --------KRLGFIDVPGHEK-----------FIKNMLAGAGGIDLVLLVVAADE-GIMPQTREHLEILELLGIKRGLVV 110 (164)
T ss_pred --------cEEEEEECCChHH-----------HHHHHHhhhhcCCEEEEEEECCC-CccHhHHHHHHHHHHhCCCcEEEE
Confidence 2789999999721 11123345789999999999975 333444444444433344 89999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 357 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+||+|+.+..........+...+.+. .....+.+++||+++.|+++
T Consensus 111 ~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 111 LTKADLVDEDWLELVEEEIRELLAGT-FLADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred EECccccCHHHHHHHHHHHHHHHHhc-CcCCCcEEEEeCCCCcCHHH
Confidence 99999986533222222221111211 01123448999999999875
No 44
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.59 E-value=5.7e-15 Score=158.34 Aligned_cols=150 Identities=19% Similarity=0.294 Sum_probs=105.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
+|+|+|++|||||||+|+|+|... +.++..|++|+...... ..+.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~t~d~~~~~-----------------~~~~~--------------- 46 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD--AIVSDTPGVTRDRKYGD-----------------AEWGG--------------- 46 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc--ceecCCCCcccCceEEE-----------------EEECC---------------
Confidence 489999999999999999999886 77888777766543210 00111
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
..+.++||||+.... ..+... +...+..++..+|++++++|+.. +.......+.+.+++.+.|+++|+|
T Consensus 47 -------~~~~liDTpG~~~~~-~~~~~~--~~~~~~~~~~~ad~vl~vvD~~~-~~~~~d~~i~~~l~~~~~piilVvN 115 (429)
T TIGR03594 47 -------REFILIDTGGIEEDD-DGLDKQ--IREQAEIAIEEADVILFVVDGRE-GLTPEDEEIAKWLRKSGKPVILVAN 115 (429)
T ss_pred -------eEEEEEECCCCCCcc-hhHHHH--HHHHHHHHHhhCCEEEEEEeCCC-CCCHHHHHHHHHHHHhCCCEEEEEE
Confidence 268899999985421 111111 22345667899999999999987 5677777788888888899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 359 KADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 359 K~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+|..+..... .. ++. ++..++ +++||.+|.|+.+
T Consensus 116 K~D~~~~~~~~--~~--~~~----lg~~~~--~~vSa~~g~gv~~ 150 (429)
T TIGR03594 116 KIDGKKEDAVA--AE--FYS----LGFGEP--IPISAEHGRGIGD 150 (429)
T ss_pred CccCCcccccH--HH--HHh----cCCCCe--EEEeCCcCCChHH
Confidence 99987543211 11 122 233445 8999999999876
No 45
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.59 E-value=5.8e-15 Score=134.69 Aligned_cols=148 Identities=18% Similarity=0.310 Sum_probs=94.8
Q ss_pred EEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcC
Q 009050 201 MLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQM 280 (545)
Q Consensus 201 ~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~ 280 (545)
+++|.+|||||||+|+|++... ..++..+.+++...... ..+.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~--~~~~~~~~~t~~~~~~~-----------------~~~~~----------------- 44 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD--AIVEDTPGVTRDRIYGE-----------------AEWGG----------------- 44 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE--EeecCCCCceeCceeEE-----------------EEECC-----------------
Confidence 5899999999999999999764 44455555443322100 00011
Q ss_pred chhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 281 PHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 281 ~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
..+.++||||..+... ..... +...+...+..+|++++++|+.. ........+.+.++..+.|+++|+||+
T Consensus 45 -----~~~~i~DtpG~~~~~~-~~~~~--~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~piiiv~nK~ 115 (157)
T cd01894 45 -----REFILIDTGGIEPDDE-GISKE--IREQAELAIEEADVILFVVDGRE-GLTPADEEIAKYLRKSKKPVILVVNKV 115 (157)
T ss_pred -----eEEEEEECCCCCCchh-HHHHH--HHHHHHHHHHhCCEEEEEEeccc-cCCccHHHHHHHHHhcCCCEEEEEECc
Confidence 2688999999976322 11100 11123445788999999999976 333444566667777789999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 361 DQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 361 D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+........ ..+.+ ....+ +++|++++.|+++
T Consensus 116 D~~~~~~~~~----~~~~~----~~~~~--~~~Sa~~~~gv~~ 148 (157)
T cd01894 116 DNIKEEDEAA----EFYSL----GFGEP--IPISAEHGRGIGD 148 (157)
T ss_pred ccCChHHHHH----HHHhc----CCCCe--EEEecccCCCHHH
Confidence 9987544311 11222 22234 7999999998775
No 46
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.59 E-value=1.6e-14 Score=137.89 Aligned_cols=166 Identities=20% Similarity=0.179 Sum_probs=105.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+++|..++|||||+++|++.. ...+..... ....+.....+..+|+|+.... .+...+
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~---~~~g~~~~~--~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~-------------- 64 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVL---AKKGGAKFK--KYDEIDKAPEEKARGITINTAHVEYETAN-------------- 64 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---Hhccccccc--ccccccCChhhhhcCccEEeeeeEecCCC--------------
Confidence 58999999999999999999763 111111100 0011222333446677764321 111111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe-EEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVV 356 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~-iiiV 356 (545)
.++.|+||||... |...+...+..+|++++++|+.. +......+++..+...+.| ++++
T Consensus 65 --------~~i~~iDtPG~~~-----------~~~~~~~~~~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~~~iIvv 124 (195)
T cd01884 65 --------RHYAHVDCPGHAD-----------YIKNMITGAAQMDGAILVVSATD-GPMPQTREHLLLARQVGVPYIVVF 124 (195)
T ss_pred --------eEEEEEECcCHHH-----------HHHHHHHHhhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCcEEEE
Confidence 3789999999832 22234556789999999999987 6677788888888888876 7899
Q ss_pred ecCCCCCCHHHHHH-HHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 357 LNKADQVDTQQLMR-VYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~~~~l~~-v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+||+|++..++..+ +...+...+.+. .....++.+++||++|.+..+
T Consensus 125 iNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 125 LNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD 173 (195)
T ss_pred EeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC
Confidence 99999985443322 333333233332 122346679999999998653
No 47
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.58 E-value=1.6e-15 Score=144.16 Aligned_cols=170 Identities=22% Similarity=0.261 Sum_probs=104.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|+.++|||||+++|++... .+..................+...|.|...... .+..
T Consensus 5 ~I~i~G~~~sGKTTL~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~----~~~~------------ 65 (188)
T PF00009_consen 5 NIAIIGHVDSGKTTLLGALLGKAG---AIDKRGIEETKNAFLDKHPEERERGITIDLSFI----SFEK------------ 65 (188)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---SSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEE----EEEB------------
T ss_pred EEEEECCCCCCcEeechhhhhhcc---ccccccccccccccccccchhhhcccccccccc----cccc------------
Confidence 799999999999999999998773 222210000000000011111122332210000 0000
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
..--..++|+||||... |...+...+..+|++|+++|+.. +......+.+..+...+.|+++|+|
T Consensus 66 ---~~~~~~i~~iDtPG~~~-----------f~~~~~~~~~~~D~ailvVda~~-g~~~~~~~~l~~~~~~~~p~ivvlN 130 (188)
T PF00009_consen 66 ---NENNRKITLIDTPGHED-----------FIKEMIRGLRQADIAILVVDAND-GIQPQTEEHLKILRELGIPIIVVLN 130 (188)
T ss_dssp ---TESSEEEEEEEESSSHH-----------HHHHHHHHHTTSSEEEEEEETTT-BSTHHHHHHHHHHHHTT-SEEEEEE
T ss_pred ---cccccceeecccccccc-----------eeecccceecccccceeeeeccc-ccccccccccccccccccceEEeee
Confidence 00114899999999732 22234455789999999999987 6788888999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccccCC---ccEEEEeeccCCCccCc
Q 009050 359 KADQVDTQQLMRVYGALMWSLGKVLNTP---EVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 359 K~D~~~~~~l~~v~~~l~~~l~k~~~~~---~v~~v~iSa~~~~~~~~ 403 (545)
|+|+. ..++.+....+...+-+..... .++.+++||.+|.|++.
T Consensus 131 K~D~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~ 177 (188)
T PF00009_consen 131 KMDLI-EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDE 177 (188)
T ss_dssp TCTSS-HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHH
T ss_pred eccch-hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHH
Confidence 99999 4455555554432332222222 46679999999998774
No 48
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.58 E-value=3.9e-15 Score=143.28 Aligned_cols=167 Identities=23% Similarity=0.320 Sum_probs=115.6
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CC-CCCCCC-cccceEEEEeCCCccccCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GA-HIGPEP-TTDRFVVVMSGVDDRSIPG 250 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~-~v~~~p-~t~r~~i~~~~~~~~~~~g 250 (545)
+.+.|+. ..++++++++..+ +|+|+||+|||||||+|.+.|...| |. .+.+.+ +--...+.+.+|+....|.
T Consensus 9 v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW 86 (248)
T COG1116 9 VSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPW 86 (248)
T ss_pred eEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccch
Confidence 4456776 4599999999887 9999999999999999999999976 21 122222 2223456677888888887
Q ss_pred ceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEE
Q 009050 251 NTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (545)
Q Consensus 251 ~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliL 325 (545)
.|+..+..++... .+ .++.+....+.++|+.|.+.+ .|..+| |++||++ +||+++.+|+++|
T Consensus 87 ~Tv~~NV~l~l~~---~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVa-------iARAL~~~P~lLL 153 (248)
T COG1116 87 LTVLDNVALGLEL---RG---KSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVA-------IARALATRPKLLL 153 (248)
T ss_pred hhHHhhheehhhc---cc---cchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHH-------HHHHHhcCCCEEE
Confidence 7764443332211 11 122233446677888888876 799999 7999999 9999999999999
Q ss_pred E-----EeCCCCCCccHHHHHHHHH-HhcCCCeEEEEecCCC
Q 009050 326 L-----LFDPHKLDISDEFKRVITS-LRGHDDKIRVVLNKAD 361 (545)
Q Consensus 326 l-----vlD~~~~~~~~~~~~~l~~-L~~~~~~iiiVlNK~D 361 (545)
+ .+|+-. ...+.+.+.. ..+.+.++++|.|.+|
T Consensus 154 lDEPFgALDalT---R~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 154 LDEPFGALDALT---REELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred EcCCcchhhHHH---HHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 9 566642 3344444433 4566789999998443
No 49
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=5e-15 Score=144.27 Aligned_cols=171 Identities=21% Similarity=0.309 Sum_probs=113.9
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CC-CCCCCCccc---ceEEEEeCCCcccc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GA-HIGPEPTTD---RFVVVMSGVDDRSI 248 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~-~v~~~p~t~---r~~i~~~~~~~~~~ 248 (545)
+++.|+.. +++++++|...+ +++|+||||||||||+++++|...| |. .+.+++.+. +..+.|.+|....-
T Consensus 10 l~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d 87 (254)
T COG1121 10 LTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVD 87 (254)
T ss_pred eEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccC
Confidence 45577753 499999998887 9999999999999999999997754 22 122333222 34677777754221
Q ss_pred CCceeEeecCCCCCCcccccccchhh--hhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 249 PGNTVAVQADMPFSGLTTFGTAFLSK--FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 249 ~g~t~~~~~~~~~~gl~~~~~~~~~~--~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
.+.-+.+............ .++.+ ........++|+.+.+.| .-|.+| |++||+- +||+++.+|
T Consensus 88 ~~fP~tV~d~V~~g~~~~~--g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~-------lARAL~~~p 158 (254)
T COG1121 88 RSFPITVKDVVLLGRYGKK--GWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVL-------LARALAQNP 158 (254)
T ss_pred CCCCcCHHHHHHccCcccc--cccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHH-------HHHHhccCC
Confidence 1111110000000000000 01111 123456677888888887 457888 7999988 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
|++++ .+|+.. ..++.++++.+++.|+.|++|.+...
T Consensus 159 ~lllLDEP~~gvD~~~---~~~i~~lL~~l~~eg~tIl~vtHDL~ 200 (254)
T COG1121 159 DLLLLDEPFTGVDVAG---QKEIYDLLKELRQEGKTVLMVTHDLG 200 (254)
T ss_pred CEEEecCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 99999 788764 57888999999988999999988433
No 50
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=1.3e-14 Score=153.11 Aligned_cols=150 Identities=20% Similarity=0.304 Sum_probs=96.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.-|+|+|.||||||||||+|++.. ..++..|.||..... |.......
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak---~kIa~ypfTTl~Pnl-----------------------G~v~~~~~------- 205 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK---PKIANYHFTTLVPNL-----------------------GVVETDDG------- 205 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC---CccccCCcceeceEE-----------------------EEEEEeCC-------
Confidence 489999999999999999999987 456777777654432 11111100
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCC---CccHHHHHHHHHHhc-----C
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL---DISDEFKRVITSLRG-----H 349 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~---~~~~~~~~~l~~L~~-----~ 349 (545)
..+.|+||||+..+..+.......| ...+++++++++++|++.. +..+.+..+.++|.. .
T Consensus 206 --------~~~~laD~PGliega~~~~gLg~~f----Lrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~ 273 (424)
T PRK12297 206 --------RSFVMADIPGLIEGASEGVGLGHQF----LRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLL 273 (424)
T ss_pred --------ceEEEEECCCCcccccccchHHHHH----HHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhcc
Confidence 2789999999976433221111111 1236789999999999742 233445556666654 3
Q ss_pred CCeEEEEecCCCCCCHHH-HHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 350 DDKIRVVLNKADQVDTQQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 350 ~~~iiiVlNK~D~~~~~~-l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+.|+++|+||+|+....+ +..... .++ ..+ +++||++++|+++
T Consensus 274 ~kP~IVV~NK~DL~~~~e~l~~l~~----~l~-----~~i--~~iSA~tgeGI~e 317 (424)
T PRK12297 274 ERPQIVVANKMDLPEAEENLEEFKE----KLG-----PKV--FPISALTGQGLDE 317 (424)
T ss_pred CCcEEEEEeCCCCcCCHHHHHHHHH----HhC-----CcE--EEEeCCCCCCHHH
Confidence 679999999999854322 222221 112 223 7899999999886
No 51
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.56 E-value=2e-14 Score=162.68 Aligned_cols=151 Identities=21% Similarity=0.339 Sum_probs=106.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.|+|+|.+|||||||+|+|+|... +++++.|++|+..+.... .+.+
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~--~iv~~~pGvT~d~~~~~~-----------------~~~~-------------- 322 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRRE--AVVEDTPGVTRDRVSYDA-----------------EWAG-------------- 322 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCeeEEEEEEEE-----------------EECC--------------
Confidence 4899999999999999999999886 788888877766543110 0111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..+.+|||||+... .+.+... +...+..++..+|++|+|+|++. ++......+.+.++..+.|+++|+
T Consensus 323 --------~~~~liDT~G~~~~-~~~~~~~--~~~~~~~~~~~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~~~~pvIlV~ 390 (712)
T PRK09518 323 --------TDFKLVDTGGWEAD-VEGIDSA--IASQAQIAVSLADAVVFVVDGQV-GLTSTDERIVRMLRRAGKPVVLAV 390 (712)
T ss_pred --------EEEEEEeCCCcCCC-CccHHHH--HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEEE
Confidence 26889999998641 1112111 22244556899999999999986 556666778888888899999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+....... ..+|.++ ...+ +++||.+|.|+.+
T Consensus 391 NK~D~~~~~~~~----~~~~~lg----~~~~--~~iSA~~g~GI~e 426 (712)
T PRK09518 391 NKIDDQASEYDA----AEFWKLG----LGEP--YPISAMHGRGVGD 426 (712)
T ss_pred ECcccccchhhH----HHHHHcC----CCCe--EEEECCCCCCchH
Confidence 999986532211 1122222 2334 7899999999987
No 52
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=2.5e-14 Score=153.64 Aligned_cols=151 Identities=21% Similarity=0.326 Sum_probs=101.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.|+|+|.+|||||||+|+|+|... +.++..|.+|+...... ..+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~--~~v~~~~~~t~d~~~~~-----------------~~~~~-------------- 48 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD--AIVADTPGVTRDRIYGE-----------------AEWLG-------------- 48 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCCCcccceEEE-----------------EEECC--------------
Confidence 5799999999999999999999886 67777666665443200 00112
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..+.++||||...... ..... +...+..++..+|++|+++|+.. +.+.....+.+.++..+.|+++|+
T Consensus 49 --------~~~~liDT~G~~~~~~-~~~~~--~~~~~~~~~~~ad~il~vvd~~~-~~~~~~~~~~~~l~~~~~piilv~ 116 (435)
T PRK00093 49 --------REFILIDTGGIEPDDD-GFEKQ--IREQAELAIEEADVILFVVDGRA-GLTPADEEIAKILRKSNKPVILVV 116 (435)
T ss_pred --------cEEEEEECCCCCCcch-hHHHH--HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCcEEEEE
Confidence 2689999999975111 01100 11234556789999999999986 455666667777777789999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|..+.+.. ..+. +. ++..++ +++||.+|.|+.+
T Consensus 117 NK~D~~~~~~~--~~~~--~~----lg~~~~--~~iSa~~g~gv~~ 152 (435)
T PRK00093 117 NKVDGPDEEAD--AYEF--YS----LGLGEP--YPISAEHGRGIGD 152 (435)
T ss_pred ECccCccchhh--HHHH--Hh----cCCCCC--EEEEeeCCCCHHH
Confidence 99997652211 1111 11 223445 7999999999876
No 53
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.56 E-value=3.5e-14 Score=129.42 Aligned_cols=146 Identities=23% Similarity=0.299 Sum_probs=94.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||+|+|++... ..+++.+.++....... ..+.+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~-----------------~~~~~-------------- 48 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR--AIVSDIAGTTRDVIEES-----------------IDIGG-------------- 48 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce--EeccCCCCCccceEEEE-----------------EEeCC--------------
Confidence 3689999999999999999999875 56666666654432110 00011
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..+.++||||....... ..+. ........+.++|++++++|+.+. ........+.. ..+.|+++|+
T Consensus 49 --------~~~~i~DtpG~~~~~~~-~~~~--~~~~~~~~~~~~~~~v~v~d~~~~-~~~~~~~~~~~--~~~~~vi~v~ 114 (157)
T cd04164 49 --------IPVRLIDTAGIRETEDE-IEKI--GIERAREAIEEADLVLFVIDASRG-LDEEDLEILEL--PADKPIIVVL 114 (157)
T ss_pred --------EEEEEEECCCcCCCcch-HHHH--HHHHHHHHHhhCCEEEEEEECCCC-CCHHHHHHHHh--hcCCCEEEEE
Confidence 26889999998653211 0000 001233457899999999999963 34444444443 4568999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+.+.... . .. ....+.+.+||.++.++++
T Consensus 115 nK~D~~~~~~~------~----~~---~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 115 NKSDLLPDSEL------L----SL---LAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred EchhcCCcccc------c----cc---cCCCceEEEECCCCCCHHH
Confidence 99999865433 0 11 1123348999999988775
No 54
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.56 E-value=1.3e-13 Score=131.30 Aligned_cols=154 Identities=18% Similarity=0.289 Sum_probs=95.5
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
..+.|+|+|.+|||||||+|+|++.... ..+++.+.+++..... .. +
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~----------------------~~---~------- 69 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNL-ARTSKTPGRTQLINFF----------------------EV---N------- 69 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCc-ccccCCCCceeEEEEE----------------------ec---C-------
Confidence 4468999999999999999999997521 4445544444332110 00 0
Q ss_pred hhhcCchhhccCceeecCCCCCCh-----hhhhhhhccChHHHHHHHh---cCCCEEEEEeCCCCCCccHHHHHHHHHHh
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSG-----EKQRTQRAYDFTGVTSWFA---AKCDLILLLFDPHKLDISDEFKRVITSLR 347 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sg-----ekq~v~~~~~~~~ia~~~~---~~aDliLlvlD~~~~~~~~~~~~~l~~L~ 347 (545)
..+.|+||||+... .++. +..+...++ ...+++++++|+.. ........+.+.+.
T Consensus 70 ----------~~l~l~DtpG~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~ 132 (196)
T PRK00454 70 ----------DKLRLVDLPGYGYAKVSKEEKEK------WQKLIEEYLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLK 132 (196)
T ss_pred ----------CeEEEeCCCCCCCcCCCchHHHH------HHHHHHHHHHhCccceEEEEEEecCC-CCCHHHHHHHHHHH
Confidence 27899999997431 1111 112333333 34578888899775 33444445556666
Q ss_pred cCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 348 GHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 348 ~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
..+.++++++||+|+.+..+..+....+...+... ....+++||+++.++++
T Consensus 133 ~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~----~~~~~~~Sa~~~~gi~~ 184 (196)
T PRK00454 133 EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG----DDEVILFSSLKKQGIDE 184 (196)
T ss_pred HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc----CCceEEEEcCCCCCHHH
Confidence 67889999999999987655444433332222221 22337999999998775
No 55
>PRK04213 GTP-binding protein; Provisional
Probab=99.55 E-value=7.3e-14 Score=133.88 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=89.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.|+++|++|||||||+|+|+|.. ..++..|++++..... ..
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~---~~~~~~~~~t~~~~~~----------------------~~------------- 51 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKK---VRVGKRPGVTRKPNHY----------------------DW------------- 51 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CccCCCCceeeCceEE----------------------ee-------------
Confidence 589999999999999999999977 3455555544332110 00
Q ss_pred hcCchhhccCceeecCCCCCC--h---h-hhhhhhccChHHHHHH----HhcCCCEEEEEeCCCCCC----------ccH
Q 009050 278 SQMPHSLLEHITLVDTPGVLS--G---E-KQRTQRAYDFTGVTSW----FAAKCDLILLLFDPHKLD----------ISD 337 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~s--g---e-kq~v~~~~~~~~ia~~----~~~~aDliLlvlD~~~~~----------~~~ 337 (545)
..+.+|||||+.. + + +++.. ..... .+..++++++++|+.... ...
T Consensus 52 --------~~~~l~Dt~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~ 117 (201)
T PRK04213 52 --------GDFILTDLPGFGFMSGVPKEVQEKIK------DEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIP 117 (201)
T ss_pred --------cceEEEeCCccccccccCHHHHHHHH------HHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcH
Confidence 2578999999632 1 1 11111 11212 245678999999986411 111
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcc--cccCCccEEEEeeccCCCccCc
Q 009050 338 EFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK--VLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 338 ~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k--~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
...+++..+...+.|+++|+||+|+.+.. .+....+...++. .........+++||++| |+++
T Consensus 118 ~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~ 182 (201)
T PRK04213 118 IDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEE 182 (201)
T ss_pred HHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHH
Confidence 23445666666789999999999997543 1111222112221 00000112389999999 9885
No 56
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.54 E-value=3.5e-14 Score=136.53 Aligned_cols=152 Identities=22% Similarity=0.280 Sum_probs=90.2
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
.+.|+|+|++|||||||+|+|++... .+...+.++..... . ...+.+ .
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~---~~~~~~~~t~~~~~-------------~----~~~~~~-----~------- 88 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADV---YAEDQLFATLDPTT-------------R----RLRLPD-----G------- 88 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchh---ccCCccceecccee-------------E----EEEecC-----C-------
Confidence 35899999999999999999999763 33333322211110 0 000000 0
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHH---HHHHHHHhcCCCeE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF---KRVITSLRGHDDKI 353 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~---~~~l~~L~~~~~~i 353 (545)
..+.++||||+.+...+..... +.. ....+..+|++++++|++........ .+++..+...+.|+
T Consensus 89 ---------~~~~i~Dt~G~~~~~~~~~~~~--~~~-~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~v 156 (204)
T cd01878 89 ---------REVLLTDTVGFIRDLPHQLVEA--FRS-TLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPM 156 (204)
T ss_pred ---------ceEEEeCCCccccCCCHHHHHH--HHH-HHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCE
Confidence 2688999999865211111111 111 12236789999999999864333323 23444444456799
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+....... .. .. ......+++||+++.|+++
T Consensus 157 iiV~NK~Dl~~~~~~~----~~----~~---~~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 157 ILVLNKIDLLDDEELE----ER----LE---AGRPDAVFISAKTGEGLDE 195 (204)
T ss_pred EEEEEccccCChHHHH----HH----hh---cCCCceEEEEcCCCCCHHH
Confidence 9999999998754432 11 01 1122348999999999875
No 57
>PRK11058 GTPase HflX; Provisional
Probab=99.54 E-value=2.8e-14 Score=151.47 Aligned_cols=151 Identities=19% Similarity=0.288 Sum_probs=95.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
|.|+|+|.+|||||||+|+|+|.++ .+++.+.+|....... ..+.+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~---~v~~~~~tTld~~~~~-----------------i~l~~~------------- 244 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARV---YAADQLFATLDPTLRR-----------------IDVADV------------- 244 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce---eeccCCCCCcCCceEE-----------------EEeCCC-------------
Confidence 6899999999999999999999884 3666666554432100 001110
Q ss_pred hcCchhhccCceeecCCCCCCh-hhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHH---HHHHHHHhcCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSG-EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF---KRVITSLRGHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sg-ekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~---~~~l~~L~~~~~~i 353 (545)
..+.|+||||+.+. ....+. . |. -+...+.++|++|+|+|+++....+.. .+++..+...+.|+
T Consensus 245 --------~~~~l~DTaG~~r~lp~~lve-~--f~-~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pv 312 (426)
T PRK11058 245 --------GETVLADTVGFIRHLPHDLVA-A--FK-ATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPT 312 (426)
T ss_pred --------CeEEEEecCcccccCCHHHHH-H--HH-HHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCE
Confidence 25789999998542 111121 1 21 133457899999999999874332332 34566665567899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+.... .. ... . ...+. .+++||++|.|+++
T Consensus 313 IiV~NKiDL~~~~~~-~~-~~~-----~-~~~~~--~v~ISAktG~GIde 352 (426)
T PRK11058 313 LLVMNKIDMLDDFEP-RI-DRD-----E-ENKPI--RVWLSAQTGAGIPL 352 (426)
T ss_pred EEEEEcccCCCchhH-HH-HHH-----h-cCCCc--eEEEeCCCCCCHHH
Confidence 999999999753211 11 110 0 11122 27899999999885
No 58
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.54 E-value=2.5e-14 Score=130.89 Aligned_cols=145 Identities=23% Similarity=0.270 Sum_probs=90.3
Q ss_pred EEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCc
Q 009050 202 LLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMP 281 (545)
Q Consensus 202 lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~ 281 (545)
|+|.+|+|||||+|+++|.. ..++..|+++..... ..+.+.+
T Consensus 1 l~G~~~~GKssl~~~~~~~~---~~~~~~~~~t~~~~~-----------------~~~~~~~------------------ 42 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR---QKVGNWPGVTVEKKE-----------------GRFKLGG------------------ 42 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc---ccccCCCCcccccce-----------------EEEeeCC------------------
Confidence 58999999999999999976 455555544433211 0000111
Q ss_pred hhhccCceeecCCCCCChhhhhhhhccChHHHHHHHh--cCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 282 HSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 282 ~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~--~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
..+.++||||.......... ..+.+.++ ..+|++++++|+... +....++..+...+.|+++|+||
T Consensus 43 ----~~~~liDtpG~~~~~~~~~~-----~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~~~~~~~iiv~NK 110 (158)
T cd01879 43 ----KEIEIVDLPGTYSLSPYSED-----EKVARDFLLGEKPDLIVNVVDATNL---ERNLYLTLQLLELGLPVVVALNM 110 (158)
T ss_pred ----eEEEEEECCCccccCCCChh-----HHHHHHHhcCCCCcEEEEEeeCCcc---hhHHHHHHHHHHcCCCEEEEEeh
Confidence 26789999998652111000 01233444 599999999999862 33345566666678999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 360 ADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 360 ~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+.+...+......+. +..+ .+.+++||..+.|++.
T Consensus 111 ~Dl~~~~~~~~~~~~~~----~~~~---~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 111 IDEAEKRGIKIDLDKLS----ELLG---VPVVPTSARKGEGIDE 147 (158)
T ss_pred hhhcccccchhhHHHHH----HhhC---CCeEEEEccCCCCHHH
Confidence 99976433222222221 1111 2338999999998774
No 59
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.54 E-value=8.3e-15 Score=134.39 Aligned_cols=167 Identities=21% Similarity=0.291 Sum_probs=122.3
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--C------CCCCC----CCcccceEEEEeCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--G------AHIGP----EPTTDRFVVVMSGV 243 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~------~~v~~----~p~t~r~~i~~~~~ 243 (545)
++.|..- .+++++++|+..+ ++-++|++|||||||++.|++...| | ..++. +..--|..+.+.+|
T Consensus 8 ~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQ 86 (223)
T COG2884 8 SKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQ 86 (223)
T ss_pred hhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEee
Confidence 3356543 4699999999887 9999999999999999999999976 1 11121 22233566777788
Q ss_pred CccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 244 DDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 244 ~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
+....+..|+..+..++..-... ...+......++|+.+.+-+ .|-.+| ||+||++ +||+++
T Consensus 87 D~rLL~~~tvyeNVA~pL~v~G~------~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRva-------IARAiV 153 (223)
T COG2884 87 DFRLLPDRTVYENVALPLRVIGK------PPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVA-------IARAIV 153 (223)
T ss_pred eccccccchHhhhhhhhhhccCC------CHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHH-------HHHHHc
Confidence 77777776664444443322111 12234455667778888876 788888 7999999 999999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
.+|+++|. -+|+. .+.+..+++..+...|.+++++.+..+
T Consensus 154 ~~P~vLlADEPTGNLDp~---~s~~im~lfeeinr~GtTVl~ATHd~~ 198 (223)
T COG2884 154 NQPAVLLADEPTGNLDPD---LSWEIMRLFEEINRLGTTVLMATHDLE 198 (223)
T ss_pred cCCCeEeecCCCCCCChH---HHHHHHHHHHHHhhcCcEEEEEeccHH
Confidence 99999988 56665 478889999999999999999888443
No 60
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.54 E-value=1.5e-13 Score=131.22 Aligned_cols=105 Identities=25% Similarity=0.273 Sum_probs=68.8
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCH-
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT- 365 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~- 365 (545)
.+.++||||... |......++..+|.+++|+|++. +.......++..+...+.|+++|+||+|+...
T Consensus 66 ~~~l~DtpG~~~-----------~~~~~~~~~~~~d~~ilV~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~ 133 (194)
T cd01891 66 KINIVDTPGHAD-----------FGGEVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALELGLKPIVVINKIDRPDAR 133 (194)
T ss_pred EEEEEECCCcHH-----------HHHHHHHHHHhcCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 688999999842 22245567899999999999986 34455556666666678899999999999642
Q ss_pred -HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 366 -QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 366 -~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
..........+..++........+.+++||++|.++.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence 22222222222222221111133448999999999876
No 61
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.53 E-value=9.1e-14 Score=129.95 Aligned_cols=147 Identities=21% Similarity=0.271 Sum_probs=88.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||+|+|++..+ ..+. |+. ...+. ++ .+.+
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~--~~~~--~t~-g~~~~------------~~------~~~~-------------- 57 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDI--DTIS--PTL-GFQIK------------TL------EYEG-------------- 57 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--CCcC--Ccc-ccceE------------EE------EECC--------------
Confidence 3899999999999999999998754 2221 111 11100 00 0001
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH----hcCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----RGHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L----~~~~~~i 353 (545)
..+.++||||... +......++..+|++++++|++......+...++..+ ...+.|+
T Consensus 58 --------~~l~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 118 (173)
T cd04154 58 --------YKLNIWDVGGQKT-----------LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATL 118 (173)
T ss_pred --------EEEEEEECCCCHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCE
Confidence 2688999999732 1113445678999999999998732222333334433 2246899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.......++...+ .+.+ .....+..+.+||++|.|+++
T Consensus 119 iiv~nK~Dl~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 119 LILANKQDLPGALSEEEIREAL--ELDK-ISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred EEEEECcccccCCCHHHHHHHh--Cccc-cCCCceEEEeccCCCCcCHHH
Confidence 9999999987532212221111 0111 122334558999999999875
No 62
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.53 E-value=5.4e-14 Score=140.93 Aligned_cols=158 Identities=20% Similarity=0.212 Sum_probs=99.0
Q ss_pred EEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhhhhhh
Q 009050 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 200 V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
|+|+|++|+|||||+|+|+...- . +.....+.....++.....+..+|+|+... ..+.+.+
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g--~-~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--------------- 63 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTG--R-IHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--------------- 63 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC--C-CcccccccCCccccCCCccccCCCcCeeccEEEEEECC---------------
Confidence 89999999999999999985331 1 111111111122333334445667766321 2222322
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
.+++|+||||... |...+...+..+|++++++|+.. +.......+++.+...+.|+++++|
T Consensus 64 -------~~i~liDTPG~~d-----------f~~~~~~~l~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~~~p~ivviN 124 (270)
T cd01886 64 -------HRINIIDTPGHVD-----------FTIEVERSLRVLDGAVAVFDAVA-GVEPQTETVWRQADRYNVPRIAFVN 124 (270)
T ss_pred -------EEEEEEECCCcHH-----------HHHHHHHHHHHcCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 3789999999853 22234566899999999999987 5677777888888888899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCC
Q 009050 359 KADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFND 398 (545)
Q Consensus 359 K~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~ 398 (545)
|+|+... +..++...+...++.. ..+. .+++|+..+
T Consensus 125 K~D~~~a-~~~~~~~~l~~~l~~~-~~~~--~~Pisa~~~ 160 (270)
T cd01886 125 KMDRTGA-DFFRVVEQIREKLGAN-PVPL--QLPIGEEDD 160 (270)
T ss_pred CCCCCCC-CHHHHHHHHHHHhCCC-ceEE--EeccccCCC
Confidence 9998742 1222333333333332 2222 378887654
No 63
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.53 E-value=3.7e-14 Score=132.18 Aligned_cols=151 Identities=23% Similarity=0.296 Sum_probs=88.6
Q ss_pred EEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCc
Q 009050 202 LLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMP 281 (545)
Q Consensus 202 lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~ 281 (545)
|+|++|||||||+|+|+|.. ..++..+.||..... +. ..+.. +
T Consensus 1 iiG~~~~GKStll~~l~~~~---~~~~~~~~~t~~~~~----------~~-------~~~~~----~------------- 43 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK---PKVANYPFTTLEPNL----------GV-------VEVPD----G------------- 43 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC---ccccCCCceeecCcc----------eE-------EEcCC----C-------------
Confidence 58999999999999999987 344554444432211 00 00110 1
Q ss_pred hhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCC------CccHHHHHHHHHHhc-------
Q 009050 282 HSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL------DISDEFKRVITSLRG------- 348 (545)
Q Consensus 282 ~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~------~~~~~~~~~l~~L~~------- 348 (545)
..+.++||||+...... .+.+. ......+..+|++++++|+... ....+...+...+..
T Consensus 44 ----~~~~i~DtpG~~~~~~~--~~~~~--~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (176)
T cd01881 44 ----ARIQVADIPGLIEGASE--GRGLG--NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETIL 115 (176)
T ss_pred ----CeEEEEeccccchhhhc--CCCcc--HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHH
Confidence 37899999998642111 01110 0123346789999999999864 122333334433321
Q ss_pred ---CCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 349 ---HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 349 ---~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.+.|+++|+||+|+............. ... ..... .+++||..+.|+++
T Consensus 116 ~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~-~~~~~--~~~~Sa~~~~gl~~ 167 (176)
T cd01881 116 GLLTAKPVIYVLNKIDLDDAEELEEELVRE---LAL-EEGAE--VVPISAKTEEGLDE 167 (176)
T ss_pred HHHhhCCeEEEEEchhcCchhHHHHHHHHH---Hhc-CCCCC--EEEEehhhhcCHHH
Confidence 367999999999998765544332111 111 11222 38999999998875
No 64
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.52 E-value=1.1e-13 Score=127.21 Aligned_cols=148 Identities=19% Similarity=0.219 Sum_probs=86.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|++.+..+ ... .|+.. ..+. .+ . +.+ .
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~--~~~--~~t~~-~~~~------------~~--~----~~~-----~--------- 43 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL--VTT--IPTVG-FNVE------------ML--Q----LEK-----H--------- 43 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc--ccc--cCccC-cceE------------EE--E----eCC-----c---------
Confidence 389999999999999999998875 221 22211 1100 00 0 000 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH-hc---CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL-RG---HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L-~~---~~~~ii 354 (545)
..+.++||||... +......++.++|++++++|+++.....+...++..+ +. .+.|++
T Consensus 44 -------~~l~i~D~~G~~~-----------~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii 105 (160)
T cd04156 44 -------LSLTVWDVGGQEK-----------MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVV 105 (160)
T ss_pred -------eEEEEEECCCCHh-----------HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEE
Confidence 2688999999732 1113345678999999999998732223333333333 21 468999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.......++...+ ...+......+..+.+||++|+|+++
T Consensus 106 lv~nK~Dl~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~Sa~~~~gv~~ 152 (160)
T cd04156 106 LLANKQDLPGALTAEEITRRF--KLKKYCSDRDWYVQPCSAVTGEGLAE 152 (160)
T ss_pred EEEECcccccCcCHHHHHHHc--CCcccCCCCcEEEEecccccCCChHH
Confidence 999999986421111222111 01111111223347899999999885
No 65
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.52 E-value=9.8e-14 Score=128.48 Aligned_cols=105 Identities=14% Similarity=0.224 Sum_probs=64.8
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeEEEEecCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIRVVLNKADQ 362 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~iiiVlNK~D~ 362 (545)
.+.++||||... +......++..+|++++++|++..........++..+.. .+.|+++|+||+|+
T Consensus 51 ~~~l~Dt~G~~~-----------~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~ 119 (167)
T cd04160 51 RLKFWDLGGQES-----------LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDL 119 (167)
T ss_pred EEEEEECCCChh-----------hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence 788999999842 112345668999999999999863222333344444322 46899999999998
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 363 VDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 363 ~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.......+....+ ...........+..+++||++|.|+++
T Consensus 120 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~g~gv~e 159 (167)
T cd04160 120 PDALSVEEIKEVF-QDKAEEIGRRDCLVLPVSALEGTGVRE 159 (167)
T ss_pred ccCCCHHHHHHHh-ccccccccCCceEEEEeeCCCCcCHHH
Confidence 6542222221111 011111222344568999999999875
No 66
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.52 E-value=9.1e-14 Score=117.26 Aligned_cols=88 Identities=28% Similarity=0.395 Sum_probs=86.0
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 009050 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGH 87 (545)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~g~ 87 (545)
.|.||++|...|...|..+|.+++|.|+.++...+|.+.|++.+.+.+||..+|.+++|.++++||+.+|++++.++.|.
T Consensus 1 ~~~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~ 80 (96)
T smart00027 1 DWAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGY 80 (96)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccc
Q 009050 88 QVTHDLWN 95 (545)
Q Consensus 88 ~~~~~l~~ 95 (545)
++|.++++
T Consensus 81 ~~~~~~~~ 88 (96)
T smart00027 81 PIPASLPP 88 (96)
T ss_pred CCCccCCH
Confidence 99999887
No 67
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.52 E-value=1.6e-13 Score=126.95 Aligned_cols=154 Identities=20% Similarity=0.294 Sum_probs=91.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
|.|+|+|.+|||||||+|+|++..+ .. ...++++...... ...... ...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~--~~-~~~~~~t~~~~~~-----------------~~~~~~---~~~-------- 49 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV--AA-GEAGGITQHIGAF-----------------EVPAEV---LKI-------- 49 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc--cc-ccCCCeEEeeccE-----------------EEeccc---CCc--------
Confidence 5699999999999999999998775 22 2222222111000 000000 000
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..+.++||||... |.......+..+|++++++|++. +...+....+..+...+.|+++|+
T Consensus 50 --------~~~~iiDtpG~~~-----------~~~~~~~~~~~~d~il~v~d~~~-~~~~~~~~~~~~~~~~~~p~ivv~ 109 (168)
T cd01887 50 --------PGITFIDTPGHEA-----------FTNMRARGASLTDIAILVVAADD-GVMPQTIEAIKLAKAANVPFIVAL 109 (168)
T ss_pred --------ceEEEEeCCCcHH-----------HHHHHHHHHhhcCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEE
Confidence 2788999999732 11123344689999999999986 234555566666666789999999
Q ss_pred cCCCCCCH--HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDT--QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~--~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+... +.+......+....-+.. ...++.+++||..|.|+.+
T Consensus 110 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 110 NKIDKPNANPERVKNELSELGLQGEDEW-GGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred EceecccccHHHHHHHHHHhhccccccc-cCcCcEEEeecccCCCHHH
Confidence 99998743 222222221110000011 1223458999999998775
No 68
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.52 E-value=9e-14 Score=132.45 Aligned_cols=105 Identities=28% Similarity=0.221 Sum_probs=64.9
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHH
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ 366 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~ 366 (545)
.+.++||||..+ ..+ .....+..+|.+++++|+.. +......+.+......+.|+++|+||+|+....
T Consensus 69 ~~~i~DtpG~~~-----~~~------~~~~~~~~~d~vi~VvD~~~-~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~ 136 (192)
T cd01889 69 QITLVDCPGHAS-----LIR------TIIGGAQIIDLMLLVVDATK-GIQTQTAECLVIGEILCKKLIVVLNKIDLIPEE 136 (192)
T ss_pred eEEEEECCCcHH-----HHH------HHHHHHhhCCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEECcccCCHH
Confidence 789999999832 111 11233578999999999986 333343333333333467999999999998654
Q ss_pred HHHHHHHHHHHHhcccc---cCCccEEEEeeccCCCccCc
Q 009050 367 QLMRVYGALMWSLGKVL---NTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 367 ~l~~v~~~l~~~l~k~~---~~~~v~~v~iSa~~~~~~~~ 403 (545)
+.......+...+++.+ ....++.+++||++|.|+++
T Consensus 137 ~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~ 176 (192)
T cd01889 137 ERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAE 176 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHH
Confidence 43333333322222211 12334458999999999875
No 69
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.52 E-value=1.8e-13 Score=124.60 Aligned_cols=146 Identities=17% Similarity=0.202 Sum_probs=88.1
Q ss_pred EEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhc
Q 009050 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQ 279 (545)
Q Consensus 200 V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~ 279 (545)
|+|+|++|||||||+|+|.|..+. ....|++...... . ..+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~-------------------~------~~~~---------- 43 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS---EDTIPTVGFNMRK-------------------V------TKGN---------- 43 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC---cCccCCCCcceEE-------------------E------EECC----------
Confidence 799999999999999999998752 1222222111000 0 0010
Q ss_pred CchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeEEE
Q 009050 280 MPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIRV 355 (545)
Q Consensus 280 ~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~iii 355 (545)
..+.++||||... +......++..+|++++++|++...........+..+.. .+.|+++
T Consensus 44 ------~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii 106 (159)
T cd04159 44 ------VTLKVWDLGGQPR-----------FRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLV 106 (159)
T ss_pred ------EEEEEEECCCCHh-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEE
Confidence 1678999999732 112344567899999999999863222222333433322 4679999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+.....++...+ .+... ....+..+++|+++|.|+++
T Consensus 107 v~nK~D~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 107 LGNKNDLPGALSVDELIEQM--NLKSI-TDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred EEeCccccCCcCHHHHHHHh--Ccccc-cCCceEEEEEEeccCCChHH
Confidence 99999987643332222222 11111 12234558999999999875
No 70
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.52 E-value=1.5e-13 Score=126.39 Aligned_cols=148 Identities=18% Similarity=0.182 Sum_probs=85.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||++.|++... ......|+.. ..+. . +...+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~--~~~~~~~t~g-~~~~---------------~---~~~~~--------------- 44 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENA--QSQIIVPTVG-FNVE---------------S---FEKGN--------------- 44 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCC--CcceecCccc-cceE---------------E---EEECC---------------
Confidence 378999999999999999998652 1111112111 1100 0 00001
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH------hcCCCe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL------RGHDDK 352 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L------~~~~~~ 352 (545)
..+.++||||... +......++.++|++++++|++..........++..+ ...+.|
T Consensus 45 -------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 106 (162)
T cd04157 45 -------LSFTAFDMSGQGK-----------YRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP 106 (162)
T ss_pred -------EEEEEEECCCCHh-----------hHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCC
Confidence 2688999999742 1123445678999999999998632112222333333 224689
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+.....++...+ .+... .......+.+||++|.|+++
T Consensus 107 ~iiv~NK~Dl~~~~~~~~~~~~l--~~~~~-~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 107 ILFFANKMDLPDALTAVKITQLL--GLENI-KDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred EEEEEeCccccCCCCHHHHHHHh--CCccc-cCceEEEEEeeCCCCCchHH
Confidence 99999999987532222222221 11111 11122347899999999886
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.50 E-value=1e-13 Score=128.54 Aligned_cols=147 Identities=17% Similarity=0.231 Sum_probs=87.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
+|+++|.+|||||||+|++++..+.. ...|+....... .. . ..+ ..
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~---~~~~t~~~~~~~------------~~--~----~~~----~~--------- 48 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRE---SYIPTIEDTYRQ------------VI--S----CSK----NI--------- 48 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---CcCCcchheEEE------------EE--E----ECC----EE---------
Confidence 68999999999999999999877521 112221111100 00 0 000 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc------CCCe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG------HDDK 352 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~------~~~~ 352 (545)
..+.++||||... |..+...+...+|.+++++|.++....++...++..++. .+.|
T Consensus 49 -------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p 110 (165)
T cd04140 49 -------CTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP 110 (165)
T ss_pred -------EEEEEEECCCCCc-----------chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 2678999999843 112344567899999999999874333344555544432 3579
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|.||+|+....++....... ..+... +..+.+||++|.|+++
T Consensus 111 iilv~nK~Dl~~~~~v~~~~~~~---~~~~~~---~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 111 IMLVGNKCDESHKREVSSNEGAA---CATEWN---CAFMETSAKTNHNVQE 155 (165)
T ss_pred EEEEEECccccccCeecHHHHHH---HHHHhC---CcEEEeecCCCCCHHH
Confidence 99999999986532221111110 011111 2237899999999875
No 72
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.50 E-value=2.1e-13 Score=125.33 Aligned_cols=145 Identities=21% Similarity=0.228 Sum_probs=85.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|+|||||+++|..... . ...|+. ...+. .. .+.+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~--~--~~~~t~-~~~~~------------~~------~~~~--------------- 42 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV--V--TTIPTI-GFNVE------------TV------TYKN--------------- 42 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC--c--CcCCcc-CcCeE------------EE------EECC---------------
Confidence 489999999999999999977654 2 112211 11100 00 0001
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHH-Hhc---CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITS-LRG---HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~-L~~---~~~~ii 354 (545)
..+.++||||... |..+.+.++..+|++|+++|++.........+.+.. ++. .+.|++
T Consensus 43 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii 104 (158)
T cd04151 43 -------LKFQVWDLGGQTS-----------IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLL 104 (158)
T ss_pred -------EEEEEEECCCCHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEE
Confidence 2688999999843 112445668999999999999863211222222322 222 368999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.....++...+ +.. ........+++||++|.|+++
T Consensus 105 iv~nK~Dl~~~~~~~~i~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~ 150 (158)
T cd04151 105 VFANKQDMPGALSEAEISEKL----GLSELKDRTWSIFKTSAIKGEGLDE 150 (158)
T ss_pred EEEeCCCCCCCCCHHHHHHHh----CccccCCCcEEEEEeeccCCCCHHH
Confidence 999999987532222222221 211 111122348999999999885
No 73
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.50 E-value=2.8e-13 Score=124.30 Aligned_cols=145 Identities=18% Similarity=0.172 Sum_probs=89.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+|++++... ....+ |....+. + ..+.+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~~~~---t~~~~~~------------~------~~~~~--------------- 42 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VTTIP---TIGFNVE------------T------VEYKN--------------- 42 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CCCCC---CcCcceE------------E------EEECC---------------
Confidence 489999999999999999998873 21111 1111100 0 00001
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~ii 354 (545)
..+.++||||... +......++..+|++++++|++..+.......++..+. ..+.|++
T Consensus 43 -------~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii 104 (158)
T cd00878 43 -------VSFTVWDVGGQDK-----------IRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLL 104 (158)
T ss_pred -------EEEEEEECCCChh-----------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE
Confidence 2789999999742 11234566789999999999987322233334443332 2467999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.......++...+ +.. .....++.+.+||++|.|+++
T Consensus 105 iv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gv~~ 150 (158)
T cd00878 105 IFANKQDLPGALSVSELIEKL----GLEKILGRRWHIQPCSAVTGDGLDE 150 (158)
T ss_pred EEeeccCCccccCHHHHHHhh----ChhhccCCcEEEEEeeCCCCCCHHH
Confidence 999999998643232332222 211 112234457899999999875
No 74
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.50 E-value=5.7e-14 Score=137.92 Aligned_cols=154 Identities=23% Similarity=0.350 Sum_probs=104.0
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
-+-|++||-||||||||+|+|+..+ ..|+..+.||-..-+ |...+++.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK---pkVa~YaFTTL~P~i-----------------------G~v~yddf------ 243 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK---PKVAHYAFTTLRPHI-----------------------GTVNYDDF------ 243 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC---Ccccccceeeecccc-----------------------ceeecccc------
Confidence 3489999999999999999999988 678887766643221 11111110
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCC---CccHHHHHHHHHHhc-----
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL---DISDEFKRVITSLRG----- 348 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~---~~~~~~~~~l~~L~~----- 348 (545)
.++++-|.||+..|..+.-..+++|. .-+++++.+++|+|.+.. ...+.+..++.+|..
T Consensus 244 ---------~q~tVADiPGiI~GAh~nkGlG~~FL----rHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L 310 (366)
T KOG1489|consen 244 ---------SQITVADIPGIIEGAHMNKGLGYKFL----RHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGL 310 (366)
T ss_pred ---------ceeEeccCccccccccccCcccHHHH----HHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhh
Confidence 36889999999987655444555553 337999999999999874 334445555555533
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 349 HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 349 ~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
...|.++|+||+|+.+.++ ..+..++ +.+..+.| +++||+.++++.+
T Consensus 311 ~~rp~liVaNKiD~~eae~--~~l~~L~----~~lq~~~V--~pvsA~~~egl~~ 357 (366)
T KOG1489|consen 311 ADRPALIVANKIDLPEAEK--NLLSSLA----KRLQNPHV--VPVSAKSGEGLEE 357 (366)
T ss_pred ccCceEEEEeccCchhHHH--HHHHHHH----HHcCCCcE--EEeeeccccchHH
Confidence 2458999999999864322 1233343 33333345 8999999988764
No 75
>COG2262 HflX GTPases [General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=140.65 Aligned_cols=150 Identities=21% Similarity=0.356 Sum_probs=96.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
|.|+++|.+|||||||+|+|+|... .+.+.-.+| ...+|+.... .+ |
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~---~~~d~LFAT-------------LdpttR~~~l----~~----g--------- 239 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADV---YVADQLFAT-------------LDPTTRRIEL----GD----G--------- 239 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCe---ecccccccc-------------ccCceeEEEe----CC----C---------
Confidence 5899999999999999999999884 333322211 2222221111 01 1
Q ss_pred hcCchhhccCceeecCCCCCCh-hhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH---HHHHHHhcCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSG-EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK---RVITSLRGHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sg-ekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~---~~l~~L~~~~~~i 353 (545)
.++.+.||-|+.+. ..+.++ + | .-+...+.+||++|+|+|+++++..+... +++..+...+.|+
T Consensus 240 --------~~vlLtDTVGFI~~LP~~LV~-A--F-ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~ 307 (411)
T COG2262 240 --------RKVLLTDTVGFIRDLPHPLVE-A--F-KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPI 307 (411)
T ss_pred --------ceEEEecCccCcccCChHHHH-H--H-HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCE
Confidence 27889999999883 122222 1 1 12344578999999999999865544443 4555555566899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|++........... . .+. .+++||.+|.|++.
T Consensus 308 i~v~NKiD~~~~~~~~~~~~~-------~--~~~--~v~iSA~~~~gl~~ 346 (411)
T COG2262 308 ILVLNKIDLLEDEEILAELER-------G--SPN--PVFISAKTGEGLDL 346 (411)
T ss_pred EEEEecccccCchhhhhhhhh-------c--CCC--eEEEEeccCcCHHH
Confidence 999999999876542222211 1 122 38999999999875
No 76
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.49 E-value=4.4e-13 Score=123.19 Aligned_cols=147 Identities=21% Similarity=0.253 Sum_probs=90.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|.+++..+ . .+..|+++....... ..+.+. .
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~--~-~~~~~~~~~~~~~~~-----------------~~~~~~----~--------- 48 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF--D-NQYQATIGIDFLSKT-----------------MYLEDK----T--------- 48 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--C-ccCCCceeeeEEEEE-----------------EEECCE----E---------
Confidence 589999999999999999999885 2 233444332221100 000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc-C--CCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-H--DDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~-~--~~~iii 355 (545)
..+.++||||... +......++.++|++++++|.++.........++..+.. . +.|+++
T Consensus 49 -------~~l~~~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iil 110 (161)
T cd01861 49 -------VRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVL 110 (161)
T ss_pred -------EEEEEEECCCcHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 1678999999621 112345668999999999999864333444555555532 2 479999
Q ss_pred EecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+...... .+....+ .+.. .+..+.+||.++.|+++
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 111 VGNKTDLSDKRQVSTEEGEKK----AKEL---NAMFIETSAKAGHNVKE 152 (161)
T ss_pred EEEChhccccCccCHHHHHHH----HHHh---CCEEEEEeCCCCCCHHH
Confidence 9999999543211 1111111 1111 13347899999999875
No 77
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.49 E-value=3.3e-13 Score=126.48 Aligned_cols=146 Identities=17% Similarity=0.184 Sum_probs=86.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|+|||||+++|++..+ ... .|+... ... .. .+.+
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~--~~~--~~t~~~-~~~------------~~------~~~~-------------- 58 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEV--VHT--SPTIGS-NVE------------EI------VYKN-------------- 58 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--CCc--CCcccc-ceE------------EE------EECC--------------
Confidence 4799999999999999999987665 222 222111 000 00 0001
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh-c---CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR-G---HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~-~---~~~~i 353 (545)
..+.++||||... |......++..+|++++++|++.........+.+..+. . .+.|+
T Consensus 59 --------~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~ 119 (174)
T cd04153 59 --------IRFLMWDIGGQES-----------LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVL 119 (174)
T ss_pred --------eEEEEEECCCCHH-----------HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCE
Confidence 2688999999842 11123445789999999999986322222233333332 2 35799
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcc-cccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGK-VLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k-~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++++||+|+....+..++...+ +. ......+..+++||.+|.|+++
T Consensus 120 viv~NK~Dl~~~~~~~~i~~~l----~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 120 LVLANKQDLKGAMTPAEISESL----GLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEEEECCCCCCCCCHHHHHHHh----CcccccCCceEEEecccCCCCCHHH
Confidence 9999999986422222222222 21 1111233457899999999885
No 78
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.49 E-value=1e-13 Score=137.84 Aligned_cols=154 Identities=21% Similarity=0.327 Sum_probs=108.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
-|++||-|||||||||+.++..+ ..++..|.||....+ |+......
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak---PKIadYpFTTL~PnL-----------------------GvV~~~~~-------- 206 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK---PKIADYPFTTLVPNL-----------------------GVVRVDGG-------- 206 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC---CcccCCccccccCcc-----------------------cEEEecCC--------
Confidence 68999999999999999999988 788888887754322 22221100
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCC---ccHHHHHHHHHHhcC-----C
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD---ISDEFKRVITSLRGH-----D 350 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~---~~~~~~~~l~~L~~~-----~ 350 (545)
+.+++-|-||++.|..+.+.-+.+|. .-++++.++++++|.+..+ ..+....+..+|..+ +
T Consensus 207 -------~sfv~ADIPGLIEGAs~G~GLG~~FL----rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~ 275 (369)
T COG0536 207 -------ESFVVADIPGLIEGASEGVGLGLRFL----RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAE 275 (369)
T ss_pred -------CcEEEecCcccccccccCCCccHHHH----HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhcc
Confidence 37899999999998888777777663 3378999999999998533 234455566666543 6
Q ss_pred CeEEEEecCCCCC-CHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 351 DKIRVVLNKADQV-DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 351 ~~iiiVlNK~D~~-~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.++|+||+|+. +.+++......+ .+....... +||||.+++|+++
T Consensus 276 K~~ivv~NKiD~~~~~e~~~~~~~~l----~~~~~~~~~--~~ISa~t~~g~~~ 323 (369)
T COG0536 276 KPRIVVLNKIDLPLDEEELEELKKAL----AEALGWEVF--YLISALTREGLDE 323 (369)
T ss_pred CceEEEEeccCCCcCHHHHHHHHHHH----HHhcCCCcc--eeeehhcccCHHH
Confidence 7999999999965 445555444444 222222222 3499999999885
No 79
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.49 E-value=3.7e-13 Score=123.39 Aligned_cols=146 Identities=15% Similarity=0.198 Sum_probs=86.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
+|+++|++|||||||+|++++..+. ....|++...... . ..+.+-
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~---~~~~~t~~~~~~~------------~------~~~~~~-------------- 47 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFV---DEYDPTIEDSYRK------------Q------VVIDGE-------------- 47 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc---CCcCCcchheEEE------------E------EEECCE--------------
Confidence 6899999999999999999987751 1112222111000 0 000010
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~ii 354 (545)
...+.++||||... |..+...++..+|.+++++|.+..........++..+. ..+.|++
T Consensus 48 ------~~~~~i~Dt~G~~~-----------~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii 110 (162)
T cd04138 48 ------TCLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV 110 (162)
T ss_pred ------EEEEEEEECCCCcc-----------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 01577899999732 12244556789999999999876322233334444433 2467999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+..........+. +... .+.+.+||++|.|+++
T Consensus 111 vv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 111 LVGNKCDLAARTVSSRQGQDLA----KSYG---IPYIETSAKTRQGVEE 152 (162)
T ss_pred EEEECcccccceecHHHHHHHH----HHhC---CeEEEecCCCCCCHHH
Confidence 9999999875321111111111 1111 2347899999999875
No 80
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.49 E-value=3.5e-14 Score=136.38 Aligned_cols=170 Identities=22% Similarity=0.310 Sum_probs=116.9
Q ss_pred ccCceeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CC-CCCC-----C-----Ccccce
Q 009050 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GA-HIGP-----E-----PTTDRF 236 (545)
Q Consensus 172 l~~l~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~-~v~~-----~-----p~t~r~ 236 (545)
++.+.+.|..+.....++++++|+.+. +|+|+||+|||||||+|.|.|.+.| |. .+.. . ....+.
T Consensus 4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~ 83 (226)
T COG1136 4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRK 83 (226)
T ss_pred EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHH
Confidence 344555554444334689999998887 9999999999999999999999975 11 1111 1 111245
Q ss_pred EEEEeCCCccccCCceeEeecCCC--CCCcccccccchhhhhhhcCchhhccCceeec-----CCCCCC-hhhhhhhhcc
Q 009050 237 VVVMSGVDDRSIPGNTVAVQADMP--FSGLTTFGTAFLSKFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRAY 308 (545)
Q Consensus 237 ~i~~~~~~~~~~~g~t~~~~~~~~--~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD-----TPG~~s-gekq~v~~~~ 308 (545)
.+.+.+|....+|..|+..+..+| +.+.... ........+++.+.+-| .|..+| ||+||++
T Consensus 84 ~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~--------~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVA--- 152 (226)
T COG1136 84 KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG--------RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA--- 152 (226)
T ss_pred hEEEECccCCCCCCCCHHHHHHhHHHHcCCChh--------HHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHH---
Confidence 677888888888877764433322 2222110 22334455666777763 588999 7999999
Q ss_pred ChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 309 ~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
+||+++.+|++||. -+|... .+++.+++..+.+ .+..+++|.|.
T Consensus 153 ----IARAL~~~P~iilADEPTgnLD~~t---~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 153 ----IARALINNPKIILADEPTGNLDSKT---AKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred ----HHHHHhcCCCeEEeeCccccCChHH---HHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 99999999999998 566654 5778888888864 47788888883
No 81
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.49 E-value=2.6e-13 Score=128.42 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=88.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+++|++|||||||+|.+.+..+ ..+ .|+.. .++. ...+.+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~--~~~--~~t~~-~~~~------------------~~~~~~------------- 60 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRL--AQH--QPTQH-PTSE------------------ELAIGN------------- 60 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCC--ccc--CCccc-cceE------------------EEEECC-------------
Confidence 45899999999999999999998764 322 22211 1110 000111
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCe
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDK 352 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ 352 (545)
..+.++||||..... .....++..+|.+++++|+++.+...+....+..+.+ .+.|
T Consensus 61 ---------~~~~~~D~~G~~~~~-----------~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p 120 (184)
T smart00178 61 ---------IKFTTFDLGGHQQAR-----------RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP 120 (184)
T ss_pred ---------EEEEEEECCCCHHHH-----------HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC
Confidence 267899999984311 1234567899999999999863222233333443322 4679
Q ss_pred EEEEecCCCCCC---HHHHHHHHHHHHHHhcccc------cCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVD---TQQLMRVYGALMWSLGKVL------NTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~---~~~l~~v~~~l~~~l~k~~------~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.. .+++.+..+ +.+.. .......+++||++|+|+++
T Consensus 121 iliv~NK~Dl~~~~~~~~i~~~l~-----l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 175 (184)
T smart00178 121 FLILGNKIDAPYAASEDELRYALG-----LTNTTGSKGKVGVRPLEVFMCSVVRRMGYGE 175 (184)
T ss_pred EEEEEeCccccCCCCHHHHHHHcC-----CCcccccccccCCceeEEEEeecccCCChHH
Confidence 999999999853 333333221 11110 11222348899999999886
No 82
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.49 E-value=2.1e-13 Score=127.82 Aligned_cols=100 Identities=23% Similarity=0.259 Sum_probs=63.4
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHH
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ 366 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~ 366 (545)
.+.|+||||... |...+..++..+|++|+++|++. +...+....+..+...+.|+++|+||+|+.+..
T Consensus 68 ~~~l~Dt~G~~~-----------~~~~~~~~~~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~ 135 (179)
T cd01890 68 LLNLIDTPGHVD-----------FSYEVSRSLAACEGALLLVDATQ-GVEAQTLANFYLALENNLEIIPVINKIDLPSAD 135 (179)
T ss_pred EEEEEECCCChh-----------hHHHHHHHHHhcCeEEEEEECCC-CccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC
Confidence 678999999843 12234556789999999999986 333344444444555678999999999986421
Q ss_pred HHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 367 QLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 367 ~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
..+....+. +..+.+....+.+||++|.|+++
T Consensus 136 -~~~~~~~~~----~~~~~~~~~~~~~Sa~~g~gi~~ 167 (179)
T cd01890 136 -PERVKQQIE----DVLGLDPSEAILVSAKTGLGVED 167 (179)
T ss_pred -HHHHHHHHH----HHhCCCcccEEEeeccCCCCHHH
Confidence 111122221 11122211238999999999875
No 83
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.49 E-value=4e-13 Score=125.28 Aligned_cols=147 Identities=19% Similarity=0.211 Sum_probs=88.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+++|.+..+ . ...|++. .... .. . +..
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~--~--~~~~t~g-~~~~------------~~--~----~~~-------------- 52 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQS--V--TTIPTVG-FNVE------------TV--T----YKN-------------- 52 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCC--c--cccCCcc-cceE------------EE--E----ECC--------------
Confidence 4799999999999999999987554 2 2223221 1110 00 0 001
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.++||||... +..+...++.++|++++++|++......+...++..+.. .+.|+
T Consensus 53 --------~~~~l~Dt~G~~~-----------~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~pi 113 (168)
T cd04149 53 --------VKFNVWDVGGQDK-----------IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALL 113 (168)
T ss_pred --------EEEEEEECCCCHH-----------HHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcE
Confidence 2688999999832 112345568999999999999873323334444444322 35799
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+.+.....++...+ .+.+. .....+.+++||++|.|+++
T Consensus 114 ilv~NK~Dl~~~~~~~~i~~~~--~~~~~-~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 114 LVFANKQDLPDAMKPHEIQEKL--GLTRI-RDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEEEECcCCccCCCHHHHHHHc--CCCcc-CCCcEEEEEeeCCCCCChHH
Confidence 9999999986421111222211 11111 11223457899999999875
No 84
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.49 E-value=1.2e-14 Score=138.98 Aligned_cols=172 Identities=22% Similarity=0.323 Sum_probs=115.3
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVA 254 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~ 254 (545)
+++.|+.+. ++++++|+..+ +++||||||||||||+|.|+|...| .+....-....+....+......|.++.
T Consensus 10 l~k~FGGl~--Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P---~~G~v~~~G~~it~l~p~~iar~Gi~RT 84 (250)
T COG0411 10 LSKRFGGLT--AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP---SSGTVIFRGRDITGLPPHRIARLGIART 84 (250)
T ss_pred ceeecCCEE--EEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC---CCceEEECCcccCCCCHHHHHhccceee
Confidence 455899987 99999999988 9999999999999999999999864 2221111111111111111223455666
Q ss_pred eecCCCCCCcccccccchh-------------------hhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccCh
Q 009050 255 VQADMPFSGLTTFGTAFLS-------------------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (545)
Q Consensus 255 ~~~~~~~~gl~~~~~~~~~-------------------~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~ 310 (545)
++....|.+++..++..+. ..+..+.+..+|+.+.+.+ .+|-++ |++.+++
T Consensus 85 FQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LE----- 159 (250)
T COG0411 85 FQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLE----- 159 (250)
T ss_pred cccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHH-----
Confidence 6666666666555544321 1133455667778888765 456677 6666666
Q ss_pred HHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCCCC
Q 009050 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQV 363 (545)
Q Consensus 311 ~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D~~ 363 (545)
+|++.+.+|.++++ ++.+.. .++..+++..+++ .+..+++|-|.+|.+
T Consensus 160 --IArALa~~P~lLLLDEPaAGln~~e---~~~l~~~i~~i~~~~g~tillIEHdM~~V 213 (250)
T COG0411 160 --IARALATQPKLLLLDEPAAGLNPEE---TEELAELIRELRDRGGVTILLIEHDMKLV 213 (250)
T ss_pred --HHHHHhcCCCEEEecCccCCCCHHH---HHHHHHHHHHHHhcCCcEEEEEEeccHHH
Confidence 99999999999988 333332 4567788888887 468999999988865
No 85
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.49 E-value=3.6e-13 Score=127.78 Aligned_cols=148 Identities=18% Similarity=0.135 Sum_probs=86.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||+|+|.+..+ .... |+. ..... . ..+.+
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~--~~~~--~T~-~~~~~------------~------i~~~~-------------- 62 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRL--AQHV--PTL-HPTSE------------E------LTIGN-------------- 62 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--cccC--Ccc-CcceE------------E------EEECC--------------
Confidence 4899999999999999999998764 2211 111 10000 0 00111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~i 353 (545)
..+.++||||.... ......++..+|.+++++|.++.....+....+..+. ..+.|+
T Consensus 63 --------~~~~l~D~~G~~~~-----------~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pv 123 (190)
T cd00879 63 --------IKFKTFDLGGHEQA-----------RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPF 123 (190)
T ss_pred --------EEEEEEECCCCHHH-----------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCE
Confidence 16789999996321 1134556789999999999986322222333444332 245799
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccc----------cCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVL----------NTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~----------~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+.......++...+ ..-+.. .......+.+||++|+|+++
T Consensus 124 ivv~NK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e 181 (190)
T cd00879 124 LILGNKIDLPGAVSEEELRQAL--GLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGE 181 (190)
T ss_pred EEEEeCCCCCCCcCHHHHHHHh--CcccccccccccccccCceeEEEEEeEecCCCChHH
Confidence 9999999986422222222211 000000 01112347899999999886
No 86
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.48 E-value=4.3e-13 Score=121.87 Aligned_cols=147 Identities=18% Similarity=0.214 Sum_probs=89.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|.+.+... ... ..+++....... .+ ...+ ..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~--~~~-~~~t~~~~~~~~-----------~~------~~~~----~~--------- 48 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKF--DEN-YKSTIGVDFKSK-----------TI------EIDG----KT--------- 48 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC--CCc-cCCceeeeeEEE-----------EE------EECC----EE---------
Confidence 589999999999999999998885 222 222211111000 00 0000 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC---CCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH---DDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~---~~~iii 355 (545)
..+.++|+||... +......++.++|++++++|+......+....++..+... +.|+++
T Consensus 49 -------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 110 (159)
T cd00154 49 -------VKLQIWDTAGQER-----------FRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIIL 110 (159)
T ss_pred -------EEEEEEecCChHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 2678999999732 1224566789999999999998633334445566655543 489999
Q ss_pred EecCCCCCCH-HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDT-QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~-~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|.... +...+....+.. + ..+..+.+||.++.|+++
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~~~---~----~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 111 VGNKIDLEDQRQVSTEEAQQFAK---E----NGLLFFETSAKTGENVEE 152 (159)
T ss_pred EEEcccccccccccHHHHHHHHH---H----cCCeEEEEecCCCCCHHH
Confidence 9999999622 211122222211 1 123348999999998775
No 87
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.48 E-value=3.3e-13 Score=124.23 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=88.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|++++..+. ....|++...... ++. +.+. .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~---~~~~~t~~~~~~~------------~~~------~~~~----~-------- 48 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV---EKYDPTIEDSYRK------------QIE------VDGQ----Q-------- 48 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---cccCCchhhhEEE------------EEE------ECCE----E--------
Confidence 36899999999999999999976641 1112222111100 000 0010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.|+||||... |..+...++.++|.+++++|.+.....+....++..+.. .+.|+
T Consensus 49 --------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 109 (163)
T cd04136 49 --------CMLEILDTAGTEQ-----------FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPM 109 (163)
T ss_pred --------EEEEEEECCCccc-----------cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 1578999999732 122345567899999999999863333444455555532 35799
Q ss_pred EEEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+.+...+.. ....+ .+... .+.+.+||++|.|+.+
T Consensus 110 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 153 (163)
T cd04136 110 VLVGNKCDLEDERVVSREEGQAL----ARQWG---CPFYETSAKSKINVDE 153 (163)
T ss_pred EEEEECccccccceecHHHHHHH----HHHcC---CeEEEecCCCCCCHHH
Confidence 99999999865322111 11111 12111 3348999999999875
No 88
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.48 E-value=5.3e-13 Score=123.60 Aligned_cols=147 Identities=17% Similarity=0.231 Sum_probs=89.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|++++..+. . ...|+.+..... ....+.+. .
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~--~-~~~~t~~~~~~~-----------------~~~~~~~~----~--------- 50 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYT--E-SYISTIGVDFKI-----------------RTIELDGK----T--------- 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--C-CCCCccceeEEE-----------------EEEEECCE----E---------
Confidence 6899999999999999999987752 1 222222111100 00000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~iii 355 (545)
..+.++||||... |......++..+|++++++|+++.....+...++..+.. .+.|+++
T Consensus 51 -------~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~ii 112 (166)
T cd01869 51 -------IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 112 (166)
T ss_pred -------EEEEEEECCCcHh-----------HHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEE
Confidence 2678999999621 122445678999999999999874333445556655543 3579999
Q ss_pred EecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.....+. +....+ .+.. .++.+.+||++|.|+++
T Consensus 113 v~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 113 VGNKCDLTDKRVVDYSEAQEF----ADEL---GIPFLETSAKNATNVEQ 154 (166)
T ss_pred EEEChhcccccCCCHHHHHHH----HHHc---CCeEEEEECCCCcCHHH
Confidence 99999986532211 111111 1111 23348899999999885
No 89
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.48 E-value=1.5e-13 Score=133.88 Aligned_cols=168 Identities=20% Similarity=0.240 Sum_probs=99.0
Q ss_pred EEEEcCCCCChHHHHHHHHcccCCCCCCCCCC-------------cccceEEEEeCCCccccCCceeEeec-CCCCCCcc
Q 009050 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP-------------TTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLT 265 (545)
Q Consensus 200 V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p-------------~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~ 265 (545)
|+++|+.++|||||+.+|+...- . ++... ++.+....+.....+..+|+|+.... .+.+.+
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~~g--~-i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~-- 76 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLG--G-VDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK-- 76 (219)
T ss_pred EEEecCCCCChHHHHHHHHHHhc--C-cCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--
Confidence 89999999999999999986541 1 11100 00111122334444556777774322 222222
Q ss_pred cccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCC------CccHHH
Q 009050 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL------DISDEF 339 (545)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~------~~~~~~ 339 (545)
..++++||||... ... .....+..+|++++|+|+... +...+.
T Consensus 77 --------------------~~i~liDtpG~~~----~~~-------~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~ 125 (219)
T cd01883 77 --------------------YRFTILDAPGHRD----FVP-------NMITGASQADVAVLVVDARKGEFEAGFEKGGQT 125 (219)
T ss_pred --------------------eEEEEEECCChHH----HHH-------HHHHHhhhCCEEEEEEECCCCccccccccccch
Confidence 3789999999732 111 223346789999999999862 222233
Q ss_pred HHHHHHHhcCC-CeEEEEecCCCCCC----HHHHHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 340 KRVITSLRGHD-DKIRVVLNKADQVD----TQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 340 ~~~l~~L~~~~-~~iiiVlNK~D~~~----~~~l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.+.+......+ .++++|+||+|+.. .....++...+...+.+. .....++.+++||++|.|+++
T Consensus 126 ~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 126 REHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 44444444444 68999999999983 333444443332122222 112235568999999999997
No 90
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.48 E-value=1.4e-12 Score=124.94 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=73.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCC--CCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPG--AHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~--~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
.|+++|++|||||||+|+|+|...+. ........++..... +..
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~---------------------~~~------------- 48 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP---------------------YPH------------- 48 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee---------------------eec-------------
Confidence 68999999999999999999976421 111010001100000 000
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiV 356 (545)
+....+.++||||+...... .. . | +....+.++|+++++.|.. ++.....+++.++..+.++++|
T Consensus 49 ------~~~~~l~l~DtpG~~~~~~~-~~-~--~--l~~~~~~~~d~~l~v~~~~---~~~~d~~~~~~l~~~~~~~ilV 113 (197)
T cd04104 49 ------PKFPNVTLWDLPGIGSTAFP-PD-D--Y--LEEMKFSEYDFFIIISSTR---FSSNDVKLAKAIQCMGKKFYFV 113 (197)
T ss_pred ------CCCCCceEEeCCCCCcccCC-HH-H--H--HHHhCccCcCEEEEEeCCC---CCHHHHHHHHHHHHhCCCEEEE
Confidence 00137899999999752111 11 1 1 1222357899999986543 4677778888888888999999
Q ss_pred ecCCCCCC
Q 009050 357 LNKADQVD 364 (545)
Q Consensus 357 lNK~D~~~ 364 (545)
+||+|+..
T Consensus 114 ~nK~D~~~ 121 (197)
T cd04104 114 RTKVDRDL 121 (197)
T ss_pred Eecccchh
Confidence 99999864
No 91
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.47 E-value=7.5e-13 Score=121.67 Aligned_cols=152 Identities=18% Similarity=0.267 Sum_probs=91.9
Q ss_pred EEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhc
Q 009050 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQ 279 (545)
Q Consensus 200 V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~ 279 (545)
|+++|.+|||||||+|.|++.... ..+++.+.++.....+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-~~~~~~~~~t~~~~~~~~~------------------------------------ 44 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-ARTSKTPGKTQLINFFNVN------------------------------------ 44 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-eeecCCCCcceeEEEEEcc------------------------------------
Confidence 799999999999999999943321 3444444333322110000
Q ss_pred CchhhccCceeecCCCCCCh-----hhhhhhhccChHHHHHHHh---cCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCC
Q 009050 280 MPHSLLEHITLVDTPGVLSG-----EKQRTQRAYDFTGVTSWFA---AKCDLILLLFDPHKLDISDEFKRVITSLRGHDD 351 (545)
Q Consensus 280 ~~~~lL~~v~liDTPG~~sg-----ekq~v~~~~~~~~ia~~~~---~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~ 351 (545)
..+.++||||+... .++... .....++ ...+++++++|... .......++++.+...+.
T Consensus 45 ------~~~~~~D~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~l~~~~~ 111 (170)
T cd01876 45 ------DKFRLVDLPGYGYAKVSKEVKEKWG------KLIEEYLENRENLKGVVLLIDSRH-GPTEIDLEMLDWLEELGI 111 (170)
T ss_pred ------CeEEEecCCCccccccCHHHHHHHH------HHHHHHHHhChhhhEEEEEEEcCc-CCCHhHHHHHHHHHHcCC
Confidence 16789999998652 111111 1222222 35678889999875 234555566677777778
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 352 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 352 ~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+++|+||+|+....+.......+...+........+ +++||+.+.++.+
T Consensus 112 ~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~Sa~~~~~~~~ 161 (170)
T cd01876 112 PFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPI--ILFSSLKGQGIDE 161 (170)
T ss_pred CEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCce--EEEecCCCCCHHH
Confidence 9999999999986655444333332222211222333 7999999987664
No 92
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.47 E-value=4.2e-13 Score=123.83 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=86.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
+|+++|++|||||||+|++++..++ ....|++...... .. .+.+- .
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~---~~~~~t~~~~~~~------------~~------~~~~~----~--------- 47 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV---DDYDPTIEDSYRK------------QI------EIDGE----V--------- 47 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC---cccCCchhhhEEE------------EE------EECCE----E---------
Confidence 5899999999999999999987752 1222222111000 00 00000 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~ii 354 (545)
..+.++||||... |..+...++..+|.+++++|.+.....+....+...+. ..+.|++
T Consensus 48 -------~~l~i~Dt~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 109 (164)
T smart00173 48 -------CLLDILDTAGQEE-----------FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV 109 (164)
T ss_pred -------EEEEEEECCCccc-----------chHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 2678999999743 11234456789999999999986332233334433332 2367999
Q ss_pred EEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+..... .....+. +.. ..+.+++||++|.|+++
T Consensus 110 ~v~nK~Dl~~~~~~~~~~~~~~~----~~~---~~~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 110 LVGNKCDLESERVVSTEEGKELA----RQW---GCPFLETSAKERVNVDE 152 (164)
T ss_pred EEEECccccccceEcHHHHHHHH----HHc---CCEEEEeecCCCCCHHH
Confidence 999999987532111 1111111 111 13448999999999875
No 93
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.47 E-value=6.4e-13 Score=122.74 Aligned_cols=145 Identities=19% Similarity=0.269 Sum_probs=88.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||++++++..+. .. ..+ |....+... . ..+.+ ..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~--~~-~~~-~~~~~~~~~----------~------~~~~~-----~~-------- 48 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYE--PQ-QLS-TYALTLYKH----------N------AKFEG-----KT-------- 48 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CC-cCC-ceeeEEEEE----------E------EEECC-----EE--------
Confidence 5899999999999999999987751 11 111 111111000 0 00000 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC--CCeEEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH--DDKIRVV 356 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~--~~~iiiV 356 (545)
..+.++||||... |..+...++.++|++|+++|+++.........++..++.. +.|+++|
T Consensus 49 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv 110 (161)
T cd04124 49 -------ILVDFWDTAGQER-----------FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVV 110 (161)
T ss_pred -------EEEEEEeCCCchh-----------hhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 1678999999732 2224556789999999999998743334455677766543 6799999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 357 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+||+|+.... ..+.. .+ .+.. ..+.+.+||++|.|+++
T Consensus 111 ~nK~Dl~~~~-~~~~~-~~----~~~~---~~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 111 ANKIDLDPSV-TQKKF-NF----AEKH---NLPLYYVSAADGTNVVK 148 (161)
T ss_pred EECccCchhH-HHHHH-HH----HHHc---CCeEEEEeCCCCCCHHH
Confidence 9999985321 11111 11 1111 12347899999999875
No 94
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.47 E-value=6.7e-13 Score=122.41 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=87.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|++++..++ ....|+....... ..+ .+.+. .
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~---~~~~~t~~~~~~~-----------~~~------~~~~~----~--------- 48 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV---SKYLPTIGIDYGV-----------KKV------SVRNK----E--------- 48 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC---CCCCCccceeEEE-----------EEE------EECCe----E---------
Confidence 5899999999999999999998852 1222221111000 000 00010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc--------CC
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--------HD 350 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~--------~~ 350 (545)
..+.++||||... |..+...+..++|++|+++|.++....+....++..+.. .+
T Consensus 49 -------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 110 (168)
T cd04119 49 -------VRVNFFDLSGHPE-----------YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMEN 110 (168)
T ss_pred -------EEEEEEECCccHH-----------HHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCC
Confidence 2788999999732 112345567999999999999874333344455554432 35
Q ss_pred CeEEEEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 351 DKIRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.|+++|.||+|+.+.... ......+. +..+ ...+.+||++|.|+++
T Consensus 111 ~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 111 IVVVVCANKIDLTKHRAVSEDEGRLWA----ESKG---FKYFETSACTGEGVNE 157 (168)
T ss_pred ceEEEEEEchhcccccccCHHHHHHHH----HHcC---CeEEEEECCCCCCHHH
Confidence 799999999998732111 11111111 1111 2338999999999875
No 95
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.47 E-value=2.7e-13 Score=125.47 Aligned_cols=148 Identities=15% Similarity=0.232 Sum_probs=89.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc-ceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-RFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+++|++|||||||++++.+..+ ... ..++.. ...+. .+.+.+..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~--~~~-~~~t~~~~~~~~------------------~~~~~~~~----------- 51 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTF--SER-QGNTIGVDFTMK------------------TLEIEGKR----------- 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC--ccc-CCCccceEEEEE------------------EEEECCEE-----------
Confidence 3699999999999999999987664 111 111111 01100 00011100
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKI 353 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~i 353 (545)
..+.++||||... |......++..+|++++++|+++.........++..+.. .+.|+
T Consensus 52 ---------~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ 111 (165)
T cd01864 52 ---------VKLQIWDTAGQER-----------FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVL 111 (165)
T ss_pred ---------EEEEEEECCChHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcE
Confidence 1678999999621 222455668899999999999874333444566665543 35789
Q ss_pred EEEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+....+. .+....+ .+......+ +.+||++|.|+++
T Consensus 112 ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~--~e~Sa~~~~~v~~ 156 (165)
T cd01864 112 LLIGNKCDLEEQREVLFEEACTL----AEKNGMLAV--LETSAKESQNVEE 156 (165)
T ss_pred EEEEECcccccccccCHHHHHHH----HHHcCCcEE--EEEECCCCCCHHH
Confidence 999999998754221 1111122 122222233 7999999999775
No 96
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.47 E-value=7.9e-13 Score=126.71 Aligned_cols=156 Identities=20% Similarity=0.192 Sum_probs=89.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|.+|||||||+|++++..++ . ...|+++..... .++ .+.|- .
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~--~-~~~pt~~~~~~~-----------~~i------~~~~~-----~-------- 48 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFP--E-EYIPTEHRRLYR-----------PAV------VLSGR-----V-------- 48 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCC--c-ccCCccccccce-----------eEE------EECCE-----E--------
Confidence 5899999999999999999988762 2 224444321110 000 00110 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh------cCCCe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR------GHDDK 352 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~------~~~~~ 352 (545)
..+.|+||||........-.. +.......+..+|++|+++|++.....+....+++.+. ..+.|
T Consensus 49 -------~~l~i~Dt~G~~~~~~~~~~e---~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p 118 (198)
T cd04142 49 -------YDLHILDVPNMQRYPGTAGQE---WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP 118 (198)
T ss_pred -------EEEEEEeCCCcccCCccchhH---HHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 167899999974310000000 11123344689999999999987433333444554442 24579
Q ss_pred EEEEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|.||+|+....... +....+. .+.. .++.+++||++|.|+++
T Consensus 119 iiivgNK~Dl~~~~~~~~~~~~~~~---~~~~---~~~~~e~Sak~g~~v~~ 164 (198)
T cd04142 119 IVVVGNKRDQQRHRFAPRHVLSVLV---RKSW---KCGYLECSAKYNWHILL 164 (198)
T ss_pred EEEEEECccccccccccHHHHHHHH---HHhc---CCcEEEecCCCCCCHHH
Confidence 99999999996432111 1111111 1111 22347999999999886
No 97
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.47 E-value=1.2e-12 Score=121.46 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=89.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||+|++++..+. ....|+....... ....+.+. .
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~---~~~~~t~~~~~~~-----------------~~~~~~~~----~-------- 51 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFN---PSFISTIGIDFKI-----------------RTIELDGK----K-------- 51 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCC---cccccCccceEEE-----------------EEEEECCE----E--------
Confidence 47999999999999999999987752 1112222111000 00000110 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~ii 354 (545)
..+.++||||... +......++.++|++++++|.++.....+..+++..+.. .+.|++
T Consensus 52 --------~~l~l~D~~g~~~-----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i 112 (167)
T cd01867 52 --------IKLQIWDTAGQER-----------FRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERM 112 (167)
T ss_pred --------EEEEEEeCCchHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE
Confidence 1678999999632 111344567999999999999864333444555655543 357999
Q ss_pred EEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+..+.. +....+ .+... .+.+.+||.+|.|+++
T Consensus 113 iv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 113 LVGNKCDMEEKRVVSKEEGEAL----ADEYG---IKFLETSAKANINVEE 155 (167)
T ss_pred EEEECcccccccCCCHHHHHHH----HHHcC---CEEEEEeCCCCCCHHH
Confidence 999999997532111 111111 11111 2338999999999875
No 98
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.47 E-value=3.9e-13 Score=125.15 Aligned_cols=147 Identities=20% Similarity=0.226 Sum_probs=87.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|++++... ....+....+...+ .+.+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~~~~t~g~~~~~~---------------------~~~~--------------- 42 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--KKVAPTVGFTPTKL---------------------RLDK--------------- 42 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--ccccCcccceEEEE---------------------EECC---------------
Confidence 379999999999999999998632 11111111110000 0111
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ii 354 (545)
..+.++||||... +..+...++.++|++++++|++......+...++..+.. .+.|++
T Consensus 43 -------~~~~i~D~~G~~~-----------~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pil 104 (167)
T cd04161 43 -------YEVCIFDLGGGAN-----------FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPIL 104 (167)
T ss_pred -------EEEEEEECCCcHH-----------HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEE
Confidence 2688999999632 112345668999999999999874333444556665543 367999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhccccc--CCccEEEEeeccCC------CccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLN--TPEVVRVYIGSFND------KPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~--~~~v~~v~iSa~~~------~~~~~ 403 (545)
+|.||+|+.+.....++...+ .+.+... ......+++||++| .|+.+
T Consensus 105 iv~NK~Dl~~~~~~~~i~~~~--~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 105 VLANKQDKKNALLGADVIEYL--SLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred EEEeCCCCcCCCCHHHHHHhc--CcccccCCCCceEEEEEeEceeCCCCccccCHHH
Confidence 999999987543233333322 1112111 11234467999998 56654
No 99
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.47 E-value=8.3e-13 Score=122.08 Aligned_cols=147 Identities=18% Similarity=0.262 Sum_probs=89.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|++++..+ . ....|+++...... ...+.+ ..
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~~--~-~~~~~t~~~~~~~~-----------------~~~~~~-----~~-------- 51 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEF--N-LDSKSTIGVEFATR-----------------SIQIDG-----KT-------- 51 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--C-CCCCCccceEEEEE-----------------EEEECC-----EE--------
Confidence 699999999999999999998875 2 22233332111100 000001 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~iii 355 (545)
..+.++||||... +..+...++..++.+++++|.++........+++..+.+ .+.|+++
T Consensus 52 -------~~~~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~v 113 (165)
T cd01868 52 -------IKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIML 113 (165)
T ss_pred -------EEEEEEeCCChHH-----------HHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 1578999999732 112345567899999999999864333444556665543 3579999
Q ss_pred EecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+...... .+....+. +.. .+..+.+||++|.|+++
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~----~~~---~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 114 VGNKSDLRHLRAVPTEEAKAFA----EKN---GLSFIETSALDGTNVEE 155 (165)
T ss_pred EEECccccccccCCHHHHHHHH----HHc---CCEEEEEECCCCCCHHH
Confidence 9999998753211 11111111 111 22347899999999875
No 100
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.47 E-value=8.1e-13 Score=122.90 Aligned_cols=146 Identities=17% Similarity=0.232 Sum_probs=89.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc-ceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-RFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+++|.+|||||||+|++++..+ ..... ++.. ...... ..+.+- .
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~--~~~~~-~t~~~~~~~~~------------------~~~~~~----~------- 52 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRF--QPVHD-LTIGVEFGARM------------------ITIDGK----Q------- 52 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCC-CccceeEEEEE------------------EEECCE----E-------
Confidence 3799999999999999999998775 22211 1111 111000 000010 0
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKI 353 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~i 353 (545)
..+.++||||... |..+.+.++.++|++++++|++..........++..++. .+.|+
T Consensus 53 ---------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pv 112 (168)
T cd01866 53 ---------IKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTI 112 (168)
T ss_pred ---------EEEEEEECCCcHH-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 2688999999521 222455667899999999999864334455566666644 36799
Q ss_pred EEEecCCCCCCHHHH--HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQL--MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l--~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+.+...+ .+.. .+. +.. ....+.+||.++.++++
T Consensus 113 ivv~nK~Dl~~~~~~~~~~~~-~~~----~~~---~~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 113 MLIGNKCDLESRREVSYEEGE-AFA----KEH---GLIFMETSAKTASNVEE 156 (168)
T ss_pred EEEEECcccccccCCCHHHHH-HHH----HHc---CCEEEEEeCCCCCCHHH
Confidence 999999998743211 1111 111 111 12347899999999875
No 101
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.47 E-value=8.3e-13 Score=122.65 Aligned_cols=148 Identities=15% Similarity=0.170 Sum_probs=85.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|++++..+. ....++....... ....+.+. .
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~---~~~~~t~~~~~~~-----------------~~~~~~~~----~--------- 48 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLT-----------------KEVTVDDK----L--------- 48 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---cCcCCccceEEEE-----------------EEEEECCE----E---------
Confidence 5899999999999999999987741 1111111110000 00000110 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH----h---cCCC
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----R---GHDD 351 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L----~---~~~~ 351 (545)
..+.++||||... +..+...+++++|.+|+++|+......++...+...+ . ..+.
T Consensus 49 -------~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (172)
T cd01862 49 -------VTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENF 110 (172)
T ss_pred -------EEEEEEeCCChHH-----------HHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 1578999999632 1224456789999999999998632222233333322 2 1267
Q ss_pred eEEEEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 352 KIRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 352 ~iiiVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+++|+||+|+..+... .+....++.. .+ .+..+++||.+|.|+++
T Consensus 111 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~--~~~~~~~Sa~~~~gv~~ 157 (172)
T cd01862 111 PFVVLGNKIDLEEKRQVSTKKAQQWCQS----NG--NIPYFETSAKEAINVEQ 157 (172)
T ss_pred eEEEEEECcccccccccCHHHHHHHHHH----cC--CceEEEEECCCCCCHHH
Confidence 99999999999832111 1112222211 11 12348899999999875
No 102
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.46 E-value=9.8e-13 Score=119.05 Aligned_cols=154 Identities=20% Similarity=0.292 Sum_probs=95.3
Q ss_pred EEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCc
Q 009050 202 LLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMP 281 (545)
Q Consensus 202 lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~ 281 (545)
|+|++|+|||||+|+|++... ..++..+.++....... ..+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~-----------------~~~~~------------------ 43 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEV--AIVSPVPGTTTDPVEYV-----------------WELGP------------------ 43 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccc--cccCCCCCcEECCeEEE-----------------EEecC------------------
Confidence 589999999999999999875 43444433332221100 00000
Q ss_pred hhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 282 HSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 282 ~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
-..+.++||||+......... +...+..++..+|++++++|+... .......++......+.|+++|+||+|
T Consensus 44 ---~~~~~~~Dt~g~~~~~~~~~~----~~~~~~~~~~~~d~il~v~~~~~~-~~~~~~~~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 ---LGPVVLIDTPGIDEAGGLGRE----REELARRVLERADLILFVVDADLR-ADEEEEKLLELLRERGKPVLLVLNKID 115 (163)
T ss_pred ---CCcEEEEECCCCCccccchhh----HHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHhcCCeEEEEEEccc
Confidence 037899999999763322211 012455678999999999999873 333333345566667889999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 362 QVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 362 ~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+............. ..... .....+.+++||.++.|+.+
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 116 LLPEEEEEELLELR-LLILL--LLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred cCChhhHHHHHHHH-Hhhcc--cccCCceEEEeeeccCCHHH
Confidence 98765544432100 00111 12233448899999988764
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.46 E-value=7.6e-13 Score=122.15 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=87.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
+|+++|.+|||||||++++....+ . +..|++. ..+. ... +..
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~--~--~~~pt~g-~~~~------------~~~------~~~--------------- 43 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEI--V--TTIPTIG-FNVE------------TVE------YKN--------------- 43 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--c--ccCCCCC-cceE------------EEE------ECC---------------
Confidence 589999999999999999975554 2 2223221 1110 000 001
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh-c---CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR-G---HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~-~---~~~~ii 354 (545)
..+.++||||... |..+...++.++|++++++|.+.....++..+++..+. . .+.|++
T Consensus 44 -------~~~~l~D~~G~~~-----------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii 105 (159)
T cd04150 44 -------ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLL 105 (159)
T ss_pred -------EEEEEEECCCCHh-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEE
Confidence 2688999999832 11234566899999999999986332333344444432 2 247999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+.....++...+ .+.. +.......+.+||++|.|+++
T Consensus 106 lv~NK~Dl~~~~~~~~i~~~~--~~~~-~~~~~~~~~~~Sak~g~gv~~ 151 (159)
T cd04150 106 VFANKQDLPNAMSAAEVTDKL--GLHS-LRNRNWYIQATCATSGDGLYE 151 (159)
T ss_pred EEEECCCCCCCCCHHHHHHHh--Cccc-cCCCCEEEEEeeCCCCCCHHH
Confidence 999999986432122222222 1111 112233446899999999886
No 104
>CHL00071 tufA elongation factor Tu
Probab=99.46 E-value=5.9e-13 Score=141.54 Aligned_cols=167 Identities=21% Similarity=0.175 Sum_probs=105.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++++|||||+|+|++.. ..++.... .....+.....+..+|+|+.... ..|. . ++
T Consensus 14 ~i~i~Gh~d~GKSTL~~~Ll~~~---~~~~~~~~--~~~~~~d~~~~e~~rg~T~~~~~-~~~~---~-~~--------- 74 (409)
T CHL00071 14 NIGTIGHVDHGKTTLTAAITMTL---AAKGGAKA--KKYDEIDSAPEEKARGITINTAH-VEYE---T-EN--------- 74 (409)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---Cccccccc--cccccccCChhhhcCCEeEEccE-EEEc---c-CC---------
Confidence 79999999999999999999875 22221111 00012222334456777774321 1110 0 11
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe-EEEEe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVVL 357 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~-iiiVl 357 (545)
.++.|+||||.. . |...+...+..+|++++++|+.. +...+..+.+..+...+.| +++++
T Consensus 75 -------~~~~~iDtPGh~----~-------~~~~~~~~~~~~D~~ilVvda~~-g~~~qt~~~~~~~~~~g~~~iIvvv 135 (409)
T CHL00071 75 -------RHYAHVDCPGHA----D-------YVKNMITGAAQMDGAILVVSAAD-GPMPQTKEHILLAKQVGVPNIVVFL 135 (409)
T ss_pred -------eEEEEEECCChH----H-------HHHHHHHHHHhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEE
Confidence 378899999962 1 22234455789999999999986 6677888888888877888 77899
Q ss_pred cCCCCCCHHHHHHHH-HHHHHHhcccc-cCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVY-GALMWSLGKVL-NTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~-~~l~~~l~k~~-~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+++.++..+.. ..+...+.... ....++.+++||+.|.++..
T Consensus 136 NK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~ 183 (409)
T CHL00071 136 NKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALT 183 (409)
T ss_pred EccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccc
Confidence 999999755543322 22222222221 11235668999999987653
No 105
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.46 E-value=1.8e-12 Score=121.71 Aligned_cols=99 Identities=23% Similarity=0.245 Sum_probs=63.7
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeEEEEecCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIRVVLNKADQ 362 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~iiiVlNK~D~ 362 (545)
.+.|+||||... |......++.++|++++++|.++.........++..+.. .+.|+++|.||+|+
T Consensus 64 ~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 132 (180)
T cd04127 64 HLQLWDTAGQER-----------FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADL 132 (180)
T ss_pred EEEEEeCCChHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccc
Confidence 678999999621 122455678999999999999874333444556665543 35689999999998
Q ss_pred CCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 363 VDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 363 ~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.+...+. +....+ .+... ++.+.+||++|.|+++
T Consensus 133 ~~~~~v~~~~~~~~----~~~~~---~~~~e~Sak~~~~v~~ 167 (180)
T cd04127 133 EDQRQVSEEQAKAL----ADKYG---IPYFETSAATGTNVEK 167 (180)
T ss_pred hhcCccCHHHHHHH----HHHcC---CeEEEEeCCCCCCHHH
Confidence 6432111 111111 11111 2348999999999875
No 106
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.46 E-value=4.2e-13 Score=123.64 Aligned_cols=146 Identities=16% Similarity=0.205 Sum_probs=87.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|+|||||+|++++..+ ++..+.|.+...... ..+.+. .
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~----~~~~~~t~~~~~~~~-----------------~~~~~~---~---------- 49 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYF----VTDYDPTIEDSYTKQ-----------------CEIDGQ---W---------- 49 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC----CcccCCCccceEEEE-----------------EEECCE---E----------
Confidence 699999999999999999998663 222222221111000 000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~ii 354 (545)
..+.++||||... +..+...++..+|.+++++|.+.....+....++..+. ..+.|++
T Consensus 50 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 111 (164)
T cd04145 50 -------AILDILDTAGQEE-----------FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMI 111 (164)
T ss_pred -------EEEEEEECCCCcc-----------hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence 1678999999742 22244566789999999999987332233444444443 2467999
Q ss_pred EEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.....+.. ....+ .+... ++.+.+||++|.|+++
T Consensus 112 iv~NK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 112 LVGNKADLEHQRKVSREEGQEL----ARKLK---IPYIETSAKDRLNVDK 154 (164)
T ss_pred EEeeCccccccceecHHHHHHH----HHHcC---CcEEEeeCCCCCCHHH
Confidence 9999999875322111 11111 11112 2337999999999875
No 107
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.46 E-value=9.4e-13 Score=128.46 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=75.1
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHHh--cCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCC
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~--~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~ 363 (545)
..++|+||||... |...+...+ ..+|++++++|+.. +....+.+++..+...+.|+++|+||+|++
T Consensus 84 ~~i~liDtpG~~~-----------~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 84 KLVTFIDLAGHER-----------YLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred cEEEEEECCCcHH-----------HHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 4689999999732 111122223 47999999999986 667888889998888899999999999998
Q ss_pred CHHHHHHHHHHHHHHhccc---------------------cc-CCccEEEEeeccCCCccCc
Q 009050 364 DTQQLMRVYGALMWSLGKV---------------------LN-TPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 364 ~~~~l~~v~~~l~~~l~k~---------------------~~-~~~v~~v~iSa~~~~~~~~ 403 (545)
+.+.+.+....+...+... .. ...++.+++||.+|+|++.
T Consensus 152 ~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~ 213 (224)
T cd04165 152 PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDL 213 (224)
T ss_pred CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHH
Confidence 8766666665554333310 01 1123558899999999875
No 108
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.46 E-value=4e-13 Score=150.47 Aligned_cols=178 Identities=19% Similarity=0.188 Sum_probs=108.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCC----------CCcccceE----EEEeCCCccccCCceeEeec-CCCCCC
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP----------EPTTDRFV----VVMSGVDDRSIPGNTVAVQA-DMPFSG 263 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~----------~p~t~r~~----i~~~~~~~~~~~g~t~~~~~-~~~~~g 263 (545)
.|+++|++|+|||||+|+|+...- .++.. ...+|+.. ..+....++...|.|+.... .+.+.+
T Consensus 26 ~i~iiGh~~~GKSTL~~~Ll~~~~--~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 26 RFITCGSVDDGKSTLIGRLLYDSK--MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred EEEEECCCCCChHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 699999999999999999998774 44422 34454322 23444445566777774321 111111
Q ss_pred cccccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHH
Q 009050 264 LTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVI 343 (545)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l 343 (545)
.++.|+||||... |.......+..+|++++|+|+.. +...+..+.+
T Consensus 104 ----------------------~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~-g~~~~t~e~~ 149 (632)
T PRK05506 104 ----------------------RKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARK-GVLTQTRRHS 149 (632)
T ss_pred ----------------------ceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCC-CccccCHHHH
Confidence 3788999999621 11122334789999999999976 4444444444
Q ss_pred HHHhcCC-CeEEEEecCCCCCC--HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCcccCCCccHHhhH
Q 009050 344 TSLRGHD-DKIRVVLNKADQVD--TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNESAFGPLGKELFE 415 (545)
Q Consensus 344 ~~L~~~~-~~iiiVlNK~D~~~--~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~~~~~~~~~~~f~ 415 (545)
..+...+ .++++|+||+|+++ .+.+..+...+. .+.+.+.+.+++.+++||++|.|+.+.. +..+|++.
T Consensus 150 ~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~-~~~~~~~~~~~~iipiSA~~g~ni~~~~--~~~~wy~g 221 (632)
T PRK05506 150 FIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYR-AFAAKLGLHDVTFIPISALKGDNVVTRS--ARMPWYEG 221 (632)
T ss_pred HHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHH-HHHHHcCCCCccEEEEecccCCCccccc--cCCCcccH
Confidence 4444334 57889999999985 232333332221 1112233445455899999999998632 23456543
No 109
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.46 E-value=1.1e-12 Score=120.76 Aligned_cols=146 Identities=17% Similarity=0.234 Sum_probs=88.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|++++..+ .. ...|++...... .++ .+.+ .+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~--~~-~~~~t~~~~~~~-----------~~v------~~~~---~~---------- 49 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEF--SE-NQESTIGAAFLT-----------QTV------NLDD---TT---------- 49 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CC-CCCCccceeEEE-----------EEE------EECC---EE----------
Confidence 689999999999999999999885 22 122222110000 000 0001 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC---CCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH---DDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~---~~~iii 355 (545)
..+.++||||... +......++..+|++++++|+++.........++..+... +.|+++
T Consensus 50 -------~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiv 111 (163)
T cd01860 50 -------VKFEIWDTAGQER-----------YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIAL 111 (163)
T ss_pred -------EEEEEEeCCchHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 2678999999621 1123455678999999999998743344455666665443 468999
Q ss_pred EecCCCCCCHH--HHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQ--QLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~--~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.+.. ...+.. .+.... . +..+.+||++|.|+.+
T Consensus 112 v~nK~D~~~~~~~~~~~~~-~~~~~~----~---~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 112 VGNKADLESKRQVSTEEAQ-EYADEN----G---LLFFETSAKTGENVNE 153 (163)
T ss_pred EEECccccccCcCCHHHHH-HHHHHc----C---CEEEEEECCCCCCHHH
Confidence 99999987321 111111 111111 1 2348999999999875
No 110
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.46 E-value=1.4e-12 Score=125.26 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=87.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCC-Ccccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFS-GLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~-gl~~~~~~~~~~~~~ 277 (545)
.|+++|.+|||||||+|++++..++ ....|+....... .. ..+. +. .
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~---~~~~~t~~~d~~~-----------~~------v~~~~~~----~-------- 49 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS---QHYKATIGVDFAL-----------KV------IEWDPNT----V-------- 49 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeEEEEE-----------EE------EEECCCC----E--------
Confidence 5899999999999999999987642 1122222111000 00 0000 00 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh-------cCC
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR-------GHD 350 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~-------~~~ 350 (545)
..+.++||||... |..+.+.++.++|++++++|.+.....+....++..+. ..+
T Consensus 50 --------~~l~l~Dt~G~~~-----------~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~ 110 (201)
T cd04107 50 --------VRLQLWDIAGQER-----------FGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEP 110 (201)
T ss_pred --------EEEEEEECCCchh-----------hhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 2678999999721 22245667899999999999987433344444444442 245
Q ss_pred CeEEEEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 351 DKIRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.|+++|.||+|+.+.... .+....+. +..+... .+.+||++|.|+++
T Consensus 111 ~piilv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~--~~e~Sak~~~~v~e 158 (201)
T cd04107 111 IPCLLLANKCDLKKRLAKDGEQMDQFC----KENGFIG--WFETSAKEGINIEE 158 (201)
T ss_pred CcEEEEEECCCcccccccCHHHHHHHH----HHcCCce--EEEEeCCCCCCHHH
Confidence 799999999999631111 11111221 1112122 37899999999885
No 111
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.45 E-value=9.6e-13 Score=125.26 Aligned_cols=148 Identities=23% Similarity=0.240 Sum_probs=88.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|++|||||||++.+++..+ ..+..+.|...... ...+ .+.+. .
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~---~~~~~~~t~~~~~~----------~~~~------~~~~~----~--------- 49 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAF---LNGNFIATVGIDFR----------NKVV------TVDGV----K--------- 49 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CccCcCCcccceeE----------EEEE------EECCE----E---------
Confidence 589999999999999999998774 22222222111110 0000 00010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~iii 355 (545)
..+.||||||... +..+...++..+|++++++|.++....++...++..+.+ .+.|+++
T Consensus 50 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piii 111 (191)
T cd04112 50 -------VKLQIWDTAGQER-----------FRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIML 111 (191)
T ss_pred -------EEEEEEeCCCcHH-----------HHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 2688999999621 112345567899999999999874333344555555543 3579999
Q ss_pred EecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+....... .....+ .+... .+.+.+||++|.|+++
T Consensus 112 v~NK~Dl~~~~~~~~~~~~~l----~~~~~---~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 112 LGNKADMSGERVVKREDGERL----AKEYG---VPFMETSAKTGLNVEL 153 (191)
T ss_pred EEEcccchhccccCHHHHHHH----HHHcC---CeEEEEeCCCCCCHHH
Confidence 99999986422111 111111 11111 2348899999999875
No 112
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.45 E-value=8.5e-13 Score=122.99 Aligned_cols=148 Identities=19% Similarity=0.212 Sum_probs=87.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+|+|++|||||||+|+|.|... ....+....+...+ .+.+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~--~~~~~t~g~~~~~i---------------------~~~~------------- 57 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDI--SHITPTQGFNIKTV---------------------QSDG------------- 57 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCC--cccCCCCCcceEEE---------------------EECC-------------
Confidence 35899999999999999999999764 22211111000000 0111
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH----hcCCCe
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----RGHDDK 352 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L----~~~~~~ 352 (545)
..+.++||||... +......+++.+|.+++++|.............+..+ ...+.|
T Consensus 58 ---------~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p 117 (173)
T cd04155 58 ---------FKLNVWDIGGQRA-----------IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP 117 (173)
T ss_pred ---------EEEEEEECCCCHH-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC
Confidence 2678999999732 1112334578999999999998632112222233222 234689
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++++||+|+.+..+..++...+ .+... .......+.+||++|+|+++
T Consensus 118 ~ivv~nK~D~~~~~~~~~i~~~l--~~~~~-~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 118 VLVFANKQDLATAAPAEEIAEAL--NLHDL-RDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred EEEEEECCCCccCCCHHHHHHHc--CCccc-CCCeEEEEEeECCCCCCHHH
Confidence 99999999987643333333222 11111 11122346899999999875
No 113
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.45 E-value=4.8e-13 Score=143.19 Aligned_cols=169 Identities=19% Similarity=0.227 Sum_probs=101.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCC------------CcccceEEEEeCCCccccCCceeEeec-CCCCCCcc
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPE------------PTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLT 265 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~------------p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~ 265 (545)
.|+++|++|+|||||+|+|++..- .+.... ..+.....++....++..+|+|+.... .+...+
T Consensus 8 ~v~iiGh~d~GKSTL~~~Ll~~~g--~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~-- 83 (425)
T PRK12317 8 NLAVIGHVDHGKSTLVGRLLYETG--AIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK-- 83 (425)
T ss_pred EEEEECCCCCChHHHHHHHHHHcC--CcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC--
Confidence 799999999999999999997763 333221 011222334444555667888885432 122211
Q ss_pred cccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCC-CccHHHHHHHH
Q 009050 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL-DISDEFKRVIT 344 (545)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~-~~~~~~~~~l~ 344 (545)
..+.|+||||... |.......+..+|++|+++|+... +......+.+.
T Consensus 84 --------------------~~i~liDtpG~~~-----------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~ 132 (425)
T PRK12317 84 --------------------YYFTIVDCPGHRD-----------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVF 132 (425)
T ss_pred --------------------eEEEEEECCCccc-----------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHH
Confidence 2789999999632 111122336789999999999751 23344444444
Q ss_pred HHhcCCC-eEEEEecCCCCCCH--HHHHHHHHHHHHHhcccccC--CccEEEEeeccCCCccCc
Q 009050 345 SLRGHDD-KIRVVLNKADQVDT--QQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 345 ~L~~~~~-~iiiVlNK~D~~~~--~~l~~v~~~l~~~l~k~~~~--~~v~~v~iSa~~~~~~~~ 403 (545)
.+...+. ++++|+||+|+.+. +.+......+...+ +..++ ..++.+++||++|.|+++
T Consensus 133 ~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l-~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 133 LARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLL-KMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHH-HhhCCCcCcceEEEeecccCCCccc
Confidence 4444454 69999999999752 22222222221111 11222 134458999999999987
No 114
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.45 E-value=5.5e-13 Score=122.73 Aligned_cols=147 Identities=20% Similarity=0.223 Sum_probs=89.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|++++..+ .....++.+...... . ..+.+- .
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~---~~~~~~~~~~~~~~~-----------~------~~~~~~----~--------- 48 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF---SEQYKSTIGVDFKTK-----------T------IEVDGK----R--------- 48 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeEEEEE-----------E------EEECCE----E---------
Confidence 589999999999999999998874 112222211110000 0 000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~iii 355 (545)
..+.++||||... +......++..+|++++++|+++....+....++..+.. .+.|+++
T Consensus 49 -------~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivv 110 (164)
T smart00175 49 -------VKLQIWDTAGQER-----------FRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIML 110 (164)
T ss_pred -------EEEEEEECCChHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 2678999999621 112455678899999999999874333444456655543 4689999
Q ss_pred EecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+....++. +....+. +..+. ..+.+||.+|.|+++
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~~----~~~~~---~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 111 VGNKSDLEDQRQVSREEAEAFA----EEHGL---PFFETSAKTNTNVEE 152 (164)
T ss_pred EEEchhcccccCCCHHHHHHHH----HHcCC---eEEEEeCCCCCCHHH
Confidence 99999987532111 1111121 11222 238999999998775
No 115
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.45 E-value=3.4e-13 Score=121.66 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=79.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|++++... .. .+ | + +..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~---~~-t----~------------------------~~~------------- 34 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LY---KK-T----Q------------------------AVE------------- 34 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--cc---cc-c----e------------------------eEE-------------
Confidence 589999999999999999998763 11 01 1 0 000
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
..-.++||||........ |..+. ..+.++|++++++|+++.... ....++..+ +.|+++|+|
T Consensus 35 -------~~~~~iDt~G~~~~~~~~------~~~~~-~~~~~ad~vilv~d~~~~~s~-~~~~~~~~~---~~p~ilv~N 96 (142)
T TIGR02528 35 -------YNDGAIDTPGEYVENRRL------YSALI-VTAADADVIALVQSATDPESR-FPPGFASIF---VKPVIGLVT 96 (142)
T ss_pred -------EcCeeecCchhhhhhHHH------HHHHH-HHhhcCCEEEEEecCCCCCcC-CChhHHHhc---cCCeEEEEE
Confidence 012589999974321111 11122 247899999999999873322 122333322 349999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 359 KADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 359 K~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+|+.+.....+....+. +......+ +++||++|.|+++
T Consensus 97 K~Dl~~~~~~~~~~~~~~----~~~~~~~~--~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 97 KIDLAEADVDIERAKELL----ETAGAEPI--FEISSVDEQGLEA 135 (142)
T ss_pred eeccCCcccCHHHHHHHH----HHcCCCcE--EEEecCCCCCHHH
Confidence 999875321111111111 11112223 7899999999875
No 116
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=4.8e-14 Score=133.87 Aligned_cols=172 Identities=19% Similarity=0.253 Sum_probs=117.9
Q ss_pred Ee-CCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCCCC--CC--------cccceEEEEeCCC
Q 009050 180 RF-NDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHIGP--EP--------TTDRFVVVMSGVD 244 (545)
Q Consensus 180 ~~-~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v~~--~p--------~t~r~~i~~~~~~ 244 (545)
.| ++ ..++++++++.++ +|+|+|++|||||||+++|.|...| |.+... .+ ...|..+.|.++.
T Consensus 12 ~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~ 89 (258)
T COG3638 12 TYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQ 89 (258)
T ss_pred ecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEecc
Confidence 45 44 4589999999887 9999999999999999999996643 111100 11 1125567888888
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhh--hhhhcCchhhccCceeecC----CCCCC-hhhhhhhhccChHHHHHHH
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSK--FECSQMPHSLLEHITLVDT----PGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~--~~~~~~~~~lL~~v~liDT----PG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
+..++..++..+.-...-|....-..++.- .+....+...|+++.+.|. ++.+| |++||++ +||++
T Consensus 90 ~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVa-------IARaL 162 (258)
T COG3638 90 FNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVA-------IARAL 162 (258)
T ss_pred CCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHH-------HHHHH
Confidence 887777665332222111211111111211 1444556678899999984 56677 7999999 99999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCCCC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQV 363 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D~~ 363 (545)
+++|.+||. -+|+.. +..+.++++.+.+ .|.++++.+|-+|++
T Consensus 163 ~Q~pkiILADEPvasLDp~~---a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA 211 (258)
T COG3638 163 VQQPKIILADEPVASLDPES---AKKVMDILKDINQEDGITVIVNLHQVDLA 211 (258)
T ss_pred hcCCCEEecCCcccccChhh---HHHHHHHHHHHHHHcCCEEEEEechHHHH
Confidence 999999998 677764 6778888887754 578999999977754
No 117
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=2e-13 Score=127.62 Aligned_cols=164 Identities=26% Similarity=0.353 Sum_probs=109.6
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccC--CCCCCCCC--------------CcccceEE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSY--PGAHIGPE--------------PTTDRFVV 238 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~--p~~~v~~~--------------p~t~r~~i 238 (545)
+.+-|+.++ ++++++++... +.|++||+|||||||+++|-...- |+..+.++ +..-|..+
T Consensus 13 l~~yYg~~~--aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~v 90 (253)
T COG1117 13 LNLYYGDKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRV 90 (253)
T ss_pred eeEEECchh--hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHh
Confidence 344677755 99999999887 999999999999999999876653 22222221 11223444
Q ss_pred EEeCCCccccCCceeEeecCCCCCCccccccc-chhh------hhhhcCchhhccCceeec--------CCCCCC-hhhh
Q 009050 239 VMSGVDDRSIPGNTVAVQADMPFSGLTTFGTA-FLSK------FECSQMPHSLLEHITLVD--------TPGVLS-GEKQ 302 (545)
Q Consensus 239 ~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~-~~~~------~~~~~~~~~lL~~v~liD--------TPG~~s-gekq 302 (545)
.|.+|.+...| .+-+++. |..+ .+..+.....|+...||| .+--+| |++|
T Consensus 91 GMVFQkPnPFp--------------~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQ 156 (253)
T COG1117 91 GMVFQKPNPFP--------------MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQ 156 (253)
T ss_pred eeeccCCCCCC--------------chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHH
Confidence 45555444444 2222221 1111 123344556677777776 444466 7999
Q ss_pred hhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHH
Q 009050 303 RTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVY 372 (545)
Q Consensus 303 ~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~ 372 (545)
|++ +||+++-+|+++|+ .+|+-. +....+++.+|++ +-++++|.| +.++..|+-
T Consensus 157 RLc-------IARalAv~PeVlLmDEPtSALDPIs---T~kIEeLi~eLk~-~yTIviVTH-----nmqQAaRvS 215 (253)
T COG1117 157 RLC-------IARALAVKPEVLLMDEPTSALDPIS---TLKIEELITELKK-KYTIVIVTH-----NMQQAARVS 215 (253)
T ss_pred HHH-------HHHHHhcCCcEEEecCcccccCchh---HHHHHHHHHHHHh-ccEEEEEeC-----CHHHHHHHh
Confidence 999 99999999999999 788764 6678889999984 568888888 445555653
No 118
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.44 E-value=2.1e-12 Score=122.87 Aligned_cols=146 Identities=18% Similarity=0.253 Sum_probs=87.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+|++++..+ ... ..|++...... ... +.+ ..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~-~~~t~~~~~~~------------~~~------~~~-----~~-------- 46 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VET-YDPTIEDSYRK------------QVV------VDG-----QP-------- 46 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--Ccc-CCCchHhhEEE------------EEE------ECC-----EE--------
Confidence 389999999999999999997664 211 12222111000 000 001 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc------CCCe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG------HDDK 352 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~------~~~~ 352 (545)
..+.||||||... |..+...++..+|++|+++|.++....+....++..+.. .+.|
T Consensus 47 -------~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p 108 (190)
T cd04144 47 -------CMLEVLDTAGQEE-----------YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP 108 (190)
T ss_pred -------EEEEEEECCCchh-----------hHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 1578999999632 112344568899999999999874333444556555532 3579
Q ss_pred EEEEecCCCCCCHHHHHHHH-HHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVY-GALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~-~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|.||+|+.....+.... ..+ .+..+ ...+.+||++|.|+++
T Consensus 109 iilvgNK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~e~SAk~~~~v~~ 153 (190)
T cd04144 109 IMIVGNKCDKVYEREVSTEEGAAL----ARRLG---CEFIEASAKTNVNVER 153 (190)
T ss_pred EEEEEEChhccccCccCHHHHHHH----HHHhC---CEEEEecCCCCCCHHH
Confidence 99999999986432211111 111 11112 2338999999999885
No 119
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.44 E-value=1.6e-12 Score=119.62 Aligned_cols=146 Identities=16% Similarity=0.231 Sum_probs=87.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCC-CCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAH-IGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~-v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+++|++|||||||+|+|++..+ .. ..+.++.+....... +.+. .
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~-------------------~~~~----~-------- 48 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTF--DPDLAATIGVDFKVKTLT-------------------VDGK----K-------- 48 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CcccCCcccceEEEEEEE-------------------ECCE----E--------
Confidence 589999999999999999998775 21 122111111110000 0000 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~i 353 (545)
..+.++||||... +......+++.+|++++++|.++....+....++..+. ..+.|+
T Consensus 49 --------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 109 (161)
T cd01863 49 --------VKLAIWDTAGQER-----------FRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVK 109 (161)
T ss_pred --------EEEEEEECCCchh-----------hhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcE
Confidence 2678999999632 11234566789999999999986332333444444443 346789
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+.......+....+ .+.. ....+++||++|.|+++
T Consensus 110 ~iv~nK~D~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 110 MLVGNKIDKENREVTREEGLKF----ARKH---NMLFIETSAKTRDGVQQ 152 (161)
T ss_pred EEEEECCcccccccCHHHHHHH----HHHc---CCEEEEEecCCCCCHHH
Confidence 9999999997322111111111 1111 23348999999999875
No 120
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.44 E-value=8.8e-13 Score=121.37 Aligned_cols=147 Identities=15% Similarity=0.211 Sum_probs=88.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|+|++..+ .. ...++.+..... .. ..+.+. .
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~--~~-~~~~~~~~~~~~-------------~~----~~~~~~----~--------- 48 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKF--KE-DSQHTIGVEFGS-------------KI----IRVGGK----R--------- 48 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-CCCCceeeeEEE-------------EE----EEECCE----E---------
Confidence 589999999999999999998775 21 111111100000 00 000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH---hcCCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL---RGHDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L---~~~~~~iii 355 (545)
..+.++||||... |....+.++..+|.+++++|+++.........++..+ ...+.|+++
T Consensus 49 -------~~l~l~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiv 110 (161)
T cd04113 49 -------VKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVIL 110 (161)
T ss_pred -------EEEEEEECcchHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 2678999999732 1224566789999999999998743333444555544 334679999
Q ss_pred EecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+....+.. .....+ .+... ...+.+||+++.|+.+
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 111 VGNKSDLADQREVTFLEASRF----AQENG---LLFLETSALTGENVEE 152 (161)
T ss_pred EEEchhcchhccCCHHHHHHH----HHHcC---CEEEEEECCCCCCHHH
Confidence 99999987532211 111111 11111 3348999999999875
No 121
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.44 E-value=1.2e-12 Score=121.33 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=89.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc-ceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-RFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+++|++|||||||+|++++..+. . ...|+.. ..... ++.. .+ ..
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~--~-~~~~t~~~~~~~~------------~~~~------~~----~~-------- 49 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFT--S-AFVSTVGIDFKVK------------TVFR------ND----KR-------- 49 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--C-CCCCceeeEEEEE------------EEEE------CC----EE--------
Confidence 6899999999999999999987752 1 1112111 01000 0000 00 00
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~ii 354 (545)
..+.++||||... +..+...++..+|.+++++|.+.....++..+++..+.. .+.|++
T Consensus 50 --------~~~~l~Dt~g~~~-----------~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 110 (165)
T cd01865 50 --------VKLQIWDTAGQER-----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVI 110 (165)
T ss_pred --------EEEEEEECCChHH-----------HHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence 2678999999632 112345568999999999999864434455566666643 356899
Q ss_pred EEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+..... +....+ .+..+. ..+.+||++|.|+.+
T Consensus 111 vv~nK~Dl~~~~~~~~~~~~~~----~~~~~~---~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 111 LVGNKCDMEDERVVSSERGRQL----ADQLGF---EFFEASAKENINVKQ 153 (165)
T ss_pred EEEECcccCcccccCHHHHHHH----HHHcCC---EEEEEECCCCCCHHH
Confidence 999999997532111 111111 111222 348899999999875
No 122
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.44 E-value=9.4e-13 Score=122.70 Aligned_cols=147 Identities=21% Similarity=0.207 Sum_probs=87.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
+|+++|.+|||||||+|++++..+ . ...|++ ...+. +. .+.+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~--~~~~T~-~~~~~------------~~------~~~~--------------- 42 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--M--QPIPTI-GFNVE------------TV------EYKN--------------- 42 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--C--CcCCcC-ceeEE------------EE------EECC---------------
Confidence 488999999999999999998754 1 222222 11110 00 0001
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ii 354 (545)
..+.++||||...- ......++..+|.+++++|.+.....++...++..+.. .+.|++
T Consensus 43 -------~~i~l~Dt~G~~~~-----------~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~pii 104 (169)
T cd04158 43 -------LKFTIWDVGGKHKL-----------RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLL 104 (169)
T ss_pred -------EEEEEEECCCChhc-----------chHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEE
Confidence 26889999997431 11344567899999999999863323444455554432 246999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.......++...+ .+.+......+..+.+||++|.|+++
T Consensus 105 lv~NK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~g~gv~~ 151 (169)
T cd04158 105 IFANKQDVAGALSVEEMTELL--SLHKLCCGRSWYIQGCDARSGMGLYE 151 (169)
T ss_pred EEEeCcCcccCCCHHHHHHHh--CCccccCCCcEEEEeCcCCCCCCHHH
Confidence 999999986432222222111 11111111122336789999999886
No 123
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.44 E-value=6.6e-13 Score=123.24 Aligned_cols=147 Identities=18% Similarity=0.199 Sum_probs=86.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+|++.+..+++ ..|.+.... +.... +.+. .
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~----~~~~~~~~~--------------~~~~~----~~~~----~--------- 46 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE----NVPRVLPEI--------------TIPAD----VTPE----R--------- 46 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc----cCCCcccce--------------Eeeee----ecCC----e---------
Confidence 58999999999999999999877532 122211100 00000 0000 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~iii 355 (545)
..+.++||||..... ...+.++..+|++++++|.++....+... .++..++. .+.|+++
T Consensus 47 -------~~~~i~Dt~G~~~~~-----------~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pvii 108 (166)
T cd01893 47 -------VPTTIVDTSSRPQDR-----------ANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIIL 108 (166)
T ss_pred -------EEEEEEeCCCchhhh-----------HHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 268899999974311 12344568999999999998633223322 34444432 3679999
Q ss_pred EecCCCCCCHHHH---HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQL---MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l---~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.+.... .+....+...... .. ..+.+||+++.|+++
T Consensus 109 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~--~~~e~Sa~~~~~v~~ 154 (166)
T cd01893 109 VGNKSDLRDGSSQAGLEEEMLPIMNEFRE---IE--TCVECSAKTLINVSE 154 (166)
T ss_pred EEEchhcccccchhHHHHHHHHHHHHHhc---cc--EEEEeccccccCHHH
Confidence 9999999764321 1211111111111 11 237899999999875
No 124
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.44 E-value=1e-12 Score=122.05 Aligned_cols=142 Identities=16% Similarity=0.176 Sum_probs=83.6
Q ss_pred EEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhc
Q 009050 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQ 279 (545)
Q Consensus 200 V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~ 279 (545)
|+++|.+|||||||++.+++..++ ....|+.....+. ....+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~---~~~~pt~g~~~~~-------------------i~~~~---------------- 43 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL---ESVVPTTGFNSVA-------------------IPTQD---------------- 43 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc---ccccccCCcceEE-------------------EeeCC----------------
Confidence 789999999999999999987642 1222222111100 00001
Q ss_pred CchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc--CCCeEEEEe
Q 009050 280 MPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRVVL 357 (545)
Q Consensus 280 ~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~--~~~~iiiVl 357 (545)
..+.++||||... |..+...++.++|++++++|.+..........++..+.. .+.|+++|.
T Consensus 44 ------~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~ 106 (164)
T cd04162 44 ------AIMELLEIGGSQN-----------LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLA 106 (164)
T ss_pred ------eEEEEEECCCCcc-----------hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 2688999999742 112345568999999999999863222334445555532 468999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCC
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFND 398 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~ 398 (545)
||+|+.......++...+ .+...........+.+||++.
T Consensus 107 NK~Dl~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~Sa~~~ 145 (164)
T cd04162 107 NKQDLPAARSVQEIHKEL--ELEPIARGRRWILQGTSLDDD 145 (164)
T ss_pred eCcCCcCCCCHHHHHHHh--CChhhcCCCceEEEEeeecCC
Confidence 999986543222222111 111111222334467888873
No 125
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.44 E-value=1.5e-12 Score=123.07 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=87.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|++++..+ . +..|+....... ..... ....+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~--~--~~~~t~~~~~~~-------------~~~~~-~~~~~-------------- 51 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF--V--NTVPTKGFNTEK-------------IKVSL-GNSKG-------------- 51 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc--C--CcCCccccceeE-------------EEeec-cCCCc--------------
Confidence 3799999999999999999998764 2 223332111000 00000 00001
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH----hcCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----RGHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L----~~~~~~i 353 (545)
..+.++||||... |..+...++..+|++++++|++..........++..+ ...+.|+
T Consensus 52 --------~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~ 112 (183)
T cd04152 52 --------ITFHFWDVGGQEK-----------LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPV 112 (183)
T ss_pred --------eEEEEEECCCcHh-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcE
Confidence 2688999999732 1123455688999999999998632222233333333 2346899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.......+.. .+ ..+...........+++||++|.|+++
T Consensus 113 iiv~NK~D~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 113 LVLANKQDLPNALSVSEVE-KL-LALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEEECcCccccCCHHHHH-HH-hCccccCCCCceEEEEeecccCCCHHH
Confidence 9999999986421111111 11 011111112223347899999999885
No 126
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.43 E-value=7.3e-13 Score=126.03 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=88.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|+|||||+|++++..+ ..+....|....... ..+.+.+- .
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~---~~~~~~~t~~~~~~~----------------~~~~~~~~----~--------- 49 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRF---LVGPYQNTIGAAFVA----------------KRMVVGER----V--------- 49 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCc---CCcCcccceeeEEEE----------------EEEEECCE----E---------
Confidence 589999999999999999998774 222222222111100 00000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC--CCeEEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH--DDKIRVV 356 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~--~~~iiiV 356 (545)
..+.++||||... +..+...+..++|++++++|.+.....+....++..+... +.|+++|
T Consensus 50 -------~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv 111 (193)
T cd04118 50 -------VTLGIWDTAGSER-----------YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLC 111 (193)
T ss_pred -------EEEEEEECCCchh-----------hhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 1577999999732 1113345678999999999998743334445666666543 5799999
Q ss_pred ecCCCCCCHHH-HHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 357 LNKADQVDTQQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~~~~-l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.||+|+.+... ...+.......+.+.. ....+.+||++|.|+++
T Consensus 112 ~nK~Dl~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~Sa~~~~gv~~ 156 (193)
T cd04118 112 GTKSDLIEQDRSLRQVDFHDVQDFADEI---KAQHFETSSKTGQNVDE 156 (193)
T ss_pred EEcccccccccccCccCHHHHHHHHHHc---CCeEEEEeCCCCCCHHH
Confidence 99999864321 1011000000011111 12337899999999875
No 127
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.43 E-value=9.1e-13 Score=122.17 Aligned_cols=147 Identities=15% Similarity=0.213 Sum_probs=89.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||++++++..+ . ...+.|....... ..+ .+.+- .
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~--~--~~~~~t~~~~~~~----------~~~------~~~~~----~--------- 50 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKF--M--ADCPHTIGVEFGT----------RII------EVNGQ----K--------- 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--C--CCCCcccceeEEE----------EEE------EECCE----E---------
Confidence 589999999999999999998765 1 1222222111100 000 00010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~iii 355 (545)
..+.++||||... |....+.++.++|.+++++|.++....+....++..+. ..+.|+++
T Consensus 51 -------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iii 112 (166)
T cd04122 51 -------IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFL 112 (166)
T ss_pred -------EEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 2678999999621 22244566899999999999987433344556665543 24578999
Q ss_pred EecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.+...+. +....+. +.. ..+.+.+||++|.|+++
T Consensus 113 v~nK~Dl~~~~~~~~~~~~~~~----~~~---~~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 113 IGNKADLEAQRDVTYEEAKQFA----DEN---GLLFLECSAKTGENVED 154 (166)
T ss_pred EEECcccccccCcCHHHHHHHH----HHc---CCEEEEEECCCCCCHHH
Confidence 99999987543221 1111121 111 22447899999999885
No 128
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.43 E-value=1.4e-12 Score=128.16 Aligned_cols=88 Identities=28% Similarity=0.400 Sum_probs=57.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
+|+|+|++|||||||+|+|+|.. ..++..|.||..... |....+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~---~~v~~~~~tT~~~~~-----------------------g~~~~~~--------- 46 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK---SEVAAYEFTTLTCVP-----------------------GVLEYKG--------- 46 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ccccCCCCccccceE-----------------------EEEEECC---------
Confidence 58999999999999999999987 455665555432211 1111111
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCC
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK 332 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~ 332 (545)
..+.++||||+.++...... +.......++++|++++++|+++
T Consensus 47 -------~~i~l~DtpG~~~~~~~~~~----~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 47 -------AKIQLLDLPGIIEGAADGKG----RGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred -------eEEEEEECCCcccccccchh----HHHHHHHhhccCCEEEEEecCCc
Confidence 27889999998764322111 11122345789999999999875
No 129
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.43 E-value=2.1e-12 Score=124.36 Aligned_cols=106 Identities=20% Similarity=0.175 Sum_probs=66.2
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCC-CeEEEEecCCCCCC
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHD-DKIRVVLNKADQVD 364 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~-~~iiiVlNK~D~~~ 364 (545)
.++.|+||||.. . |...+...+..+|++++++|+...+...+..+.+..+...+ .++++|+||+|+.+
T Consensus 83 ~~i~~iDtPG~~---~--------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 83 RHVSFVDCPGHE---I--------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred cEEEEEECCChH---H--------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 578999999952 1 11233445678999999999986333334444555444444 47899999999987
Q ss_pred HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 365 TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 365 ~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
..+....+..+...+.... ...++.+++||++|.|+++
T Consensus 152 ~~~~~~~~~~i~~~~~~~~-~~~~~i~~vSA~~g~gi~~ 189 (203)
T cd01888 152 EEQALENYEQIKKFVKGTI-AENAPIIPISAQLKYNIDV 189 (203)
T ss_pred HHHHHHHHHHHHHHHhccc-cCCCcEEEEeCCCCCCHHH
Confidence 5554443333321122111 1223348999999999875
No 130
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.43 E-value=2e-12 Score=118.99 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=88.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|+|||||+|++++..+. ....|+....... ....+.+. +.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~---~~~~~t~~~~~~~-----------------~~~~~~~~---~~--------- 49 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT---KDYKKTIGVDFLE-----------------KQIFLRQS---DE--------- 49 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---CCCCCcEEEEEEE-----------------EEEEEcCC---CC---------
Confidence 5899999999999999999987642 1112221111100 00000000 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc--CCCeEEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRVV 356 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~--~~~~iiiV 356 (545)
-..+.++||||... |..+...++..+|.+++++|.++.........++..+.. .+.|+++|
T Consensus 50 ------~~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv 112 (162)
T cd04106 50 ------DVRLMLWDTAGQEE-----------FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLV 112 (162)
T ss_pred ------EEEEEEeeCCchHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 02688999999521 222455678999999999999874333444455555533 36799999
Q ss_pred ecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 357 LNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.||+|+.....+.. ....+ .+..+ .+.+++||++|.|+++
T Consensus 113 ~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 113 QTKIDLLDQAVITNEEAEAL----AKRLQ---LPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEChhcccccCCCHHHHHHH----HHHcC---CeEEEEECCCCCCHHH
Confidence 99999875322111 11111 11112 2347899999998775
No 131
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.42 E-value=5.9e-13 Score=130.47 Aligned_cols=168 Identities=22% Similarity=0.285 Sum_probs=110.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--------CCCCCCCCcc-cceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--------GAHIGPEPTT-DRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--------~~~v~~~p~t-~r~~i~~~~~~~ 245 (545)
.++.|++ ..++++++|+... +++|+||||||||||+++|+|...| |..+...+.. -...+.+.+|..
T Consensus 8 ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~ 85 (258)
T COG1120 8 LSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSP 85 (258)
T ss_pred EEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCC
Confidence 5567776 4599999999887 9999999999999999999998765 1112221211 223566677766
Q ss_pred cccCCceeEe---ecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 246 RSIPGNTVAV---QADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 246 ~~~~g~t~~~---~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
....+.|+.. ....|+.+.... ...+......+.|+.+.+.+ .-..+| ||+|++. +|+++
T Consensus 86 ~~~~~~tV~d~V~~GR~p~~~~~~~-----~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~-------iArAL 153 (258)
T COG1120 86 SAPFGLTVYELVLLGRYPHLGLFGR-----PSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVL-------IARAL 153 (258)
T ss_pred CCCCCcEEeehHhhcCCcccccccC-----CCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHH-------HHHHH
Confidence 6666666621 223333222110 01122223444555555544 223445 7999998 89999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHh-cCCCeEEEEecCCC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNKAD 361 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~-~~~~~iiiVlNK~D 361 (545)
+++++++++ -+|..+ ..++.++++.+. +.+..+++|+|..+
T Consensus 154 aQ~~~iLLLDEPTs~LDi~~---Q~evl~ll~~l~~~~~~tvv~vlHDlN 200 (258)
T COG1120 154 AQETPILLLDEPTSHLDIAH---QIEVLELLRDLNREKGLTVVMVLHDLN 200 (258)
T ss_pred hcCCCEEEeCCCccccCHHH---HHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 999999998 556554 457778888887 55889999999544
No 132
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.42 E-value=2.2e-12 Score=121.10 Aligned_cols=147 Identities=20% Similarity=0.215 Sum_probs=88.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||++++....+ . ...|++. ..+. .. .+..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~--~--~~~~t~~-~~~~------------~~------~~~~-------------- 56 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES--V--TTIPTIG-FNVE------------TV------TYKN-------------- 56 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC--C--CcCCccc-cceE------------EE------EECC--------------
Confidence 4799999999999999999964332 1 2223221 1110 00 0001
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.++||||... +..+...++.++|++|+++|.+.....++..+++..+.. .+.|+
T Consensus 57 --------~~l~l~D~~G~~~-----------~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pi 117 (175)
T smart00177 57 --------ISFTVWDVGGQDK-----------IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVI 117 (175)
T ss_pred --------EEEEEEECCCChh-----------hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcE
Confidence 2688999999743 112345568999999999999864333444455554422 24799
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+.+.....++...+ .+... ....+..+++||++|.|+++
T Consensus 118 ilv~NK~Dl~~~~~~~~i~~~~--~~~~~-~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 118 LVFANKQDLPDAMKAAEITEKL--GLHSI-RDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEEEeCcCcccCCCHHHHHHHh--Ccccc-CCCcEEEEEeeCCCCCCHHH
Confidence 9999999986432112222221 01111 11223345799999999886
No 133
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.42 E-value=2.8e-12 Score=118.47 Aligned_cols=147 Identities=15% Similarity=0.178 Sum_probs=86.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+++++...+ +...+.|....... ...+.+. .
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~----~~~~~~t~~~~~~~-----------------~~~~~~~----~-------- 48 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF----VEKYDPTIEDSYRK-----------------QVEVDGQ----Q-------- 48 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC----CcccCCcchheEEE-----------------EEEECCE----E--------
Confidence 3689999999999999999986543 11111222211100 0000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~i 353 (545)
..+.++||||... |..+...+...+|.+++++|.+.....+...+++..+. ..+.|+
T Consensus 49 --------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 109 (164)
T cd04175 49 --------CMLEILDTAGTEQ-----------FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPM 109 (164)
T ss_pred --------EEEEEEECCCccc-----------chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 2577999999732 12234456789999999999876332334444555443 245799
Q ss_pred EEEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+........ ....+. +... .+.+.+||++|.|+++
T Consensus 110 ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 110 ILVGNKCDLEDERVVGKEQGQNLA----RQWG---CAFLETSAKAKINVNE 153 (164)
T ss_pred EEEEECCcchhccEEcHHHHHHHH----HHhC---CEEEEeeCCCCCCHHH
Confidence 99999999864321111 111121 1111 2348999999999885
No 134
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.6e-13 Score=134.98 Aligned_cols=160 Identities=21% Similarity=0.288 Sum_probs=119.3
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCC-----CC----cccceEEEEeCCCccccCCce
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGP-----EP----TTDRFVVVMSGVDDRSIPGNT 252 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~-----~p----~t~r~~i~~~~~~~~~~~g~t 252 (545)
.+++++++++.. +.+|+|.+|||||||++++.+.+.| |.. +.+ .+ ...|..+.|.+|++......|
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrT 99 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRT 99 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccch
Confidence 588999998877 9999999999999999999999976 111 111 11 123556788888877776666
Q ss_pred eEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-
Q 009050 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL- 326 (545)
Q Consensus 253 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl- 326 (545)
+..+..+|+. -.| .++.+...+..++|+.+.|-| +|..+| |+|||+. +||+++.+|+++|.
T Consensus 100 V~~NvA~PLe---iag---~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVa-------IARALa~~P~iLL~D 166 (339)
T COG1135 100 VFENVAFPLE---LAG---VPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVA-------IARALANNPKILLCD 166 (339)
T ss_pred HHhhhhhhHh---hcC---CCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHH-------HHHHHhcCCCEEEec
Confidence 6433333321 011 245567788889999999988 899999 7999999 99999999999988
Q ss_pred ----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCCC
Q 009050 327 ----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKADQ 362 (545)
Q Consensus 327 ----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D~ 362 (545)
.+||. .+....++++.+.+ .+.++++|.|-+|-
T Consensus 167 EaTSALDP~---TT~sIL~LL~~In~~lglTIvlITHEm~V 204 (339)
T COG1135 167 EATSALDPE---TTQSILELLKDINRELGLTIVLITHEMEV 204 (339)
T ss_pred CccccCChH---HHHHHHHHHHHHHHHcCCEEEEEechHHH
Confidence 67765 47788888888854 57888888885553
No 135
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.42 E-value=4.6e-13 Score=147.99 Aligned_cols=143 Identities=21% Similarity=0.253 Sum_probs=91.8
Q ss_pred cCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchh
Q 009050 204 GQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHS 283 (545)
Q Consensus 204 G~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~ 283 (545)
|++|||||||+|+|+|.. ..+++.|++|..... ....+.+
T Consensus 1 G~pNvGKSSL~N~Ltg~~---~~v~n~pG~Tv~~~~-----------------~~i~~~~-------------------- 40 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN---QTVGNWPGVTVEKKE-----------------GKLGFQG-------------------- 40 (591)
T ss_pred CCCCCCHHHHHHHHhCCC---CeecCCCCeEEEEEE-----------------EEEEECC--------------------
Confidence 899999999999999987 567776655543321 0011111
Q ss_pred hccCceeecCCCCCChhhhhhhhccChHHHHHHH--hcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 284 LLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWF--AAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 284 lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~--~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
..+.++||||..+-...... +.+++.+ .+.+|++++++|+++. ++...+..++.+.+.|+++|+||+|
T Consensus 41 --~~i~lvDtPG~~~~~~~s~~-----e~v~~~~l~~~~aDvvI~VvDat~l---er~l~l~~ql~~~~~PiIIVlNK~D 110 (591)
T TIGR00437 41 --EDIEIVDLPGIYSLTTFSLE-----EEVARDYLLNEKPDLVVNVVDASNL---ERNLYLTLQLLELGIPMILALNLVD 110 (591)
T ss_pred --eEEEEEECCCccccCccchH-----HHHHHHHHhhcCCCEEEEEecCCcc---hhhHHHHHHHHhcCCCEEEEEehhH
Confidence 26789999999761110000 1123333 3589999999999863 3445666667777899999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 362 QVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 362 ~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+.+...+......+ .+..+ ++.+++||++|+|+++
T Consensus 111 l~~~~~i~~d~~~L----~~~lg---~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 111 EAEKKGIRIDEEKL----EERLG---VPVVPTSATEGRGIER 145 (591)
T ss_pred HHHhCCChhhHHHH----HHHcC---CCEEEEECCCCCCHHH
Confidence 86433222112222 22222 2348999999999987
No 136
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.42 E-value=8.1e-13 Score=121.87 Aligned_cols=146 Identities=16% Similarity=0.217 Sum_probs=87.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|+|||||++.+++..++. ...|+....... ++ .+.+. .
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~---~~~~t~~~~~~~------------~~------~~~~~----~--------- 48 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIE---KYDPTIEDFYRK------------EI------EVDSS----P--------- 48 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CCCCchhheEEE------------EE------EECCE----E---------
Confidence 68999999999999999999876521 111221111100 00 00010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ii 354 (545)
..+.|+||||... |..+...++.++|.+++++|.++....++...++..+.+ .+.|++
T Consensus 49 -------~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piv 110 (163)
T cd04176 49 -------SVLEILDTAGTEQ-----------FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII 110 (163)
T ss_pred -------EEEEEEECCCccc-----------ccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 2578999999632 112344567899999999999873333445555555533 467999
Q ss_pred EEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.....+.. ....+ .+... .+.+++||++|.|+.+
T Consensus 111 iv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 111 LVGNKVDLESEREVSSAEGRAL----AEEWG---CPFMETSAKSKTMVNE 153 (163)
T ss_pred EEEECccchhcCccCHHHHHHH----HHHhC---CEEEEecCCCCCCHHH
Confidence 9999999864322111 11111 11111 2347999999999875
No 137
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.41 E-value=3.4e-12 Score=117.36 Aligned_cols=146 Identities=16% Similarity=0.205 Sum_probs=86.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|++++..++. ...+++. .... .. ..+.+ +.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~---~~~~~~~-~~~~-------------~~----~~~~~----~~--------- 47 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVE---DYEPTKA-DSYR-------------KK----VVLDG----ED--------- 47 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcc---ccCCcch-hhEE-------------EE----EEECC----EE---------
Confidence 58999999999999999999877521 1111111 1100 00 00000 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~ii 354 (545)
..+.++||||... +......++..+|.+++++|............++..+. ..+.|++
T Consensus 48 -------~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 109 (164)
T cd04139 48 -------VQLNILDTAGQED-----------YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLL 109 (164)
T ss_pred -------EEEEEEECCChhh-----------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 2678999999743 11245567889999999999876322223334444332 2468999
Q ss_pred EEecCCCCCCHH-HHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQ-QLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~-~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.. ........+. +... .+.+.+||++|.|+++
T Consensus 110 iv~NK~D~~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~gi~~ 152 (164)
T cd04139 110 LVGNKCDLEDKRQVSSEEAANLA----RQWG---VPYVETSAKTRQNVEK 152 (164)
T ss_pred EEEEccccccccccCHHHHHHHH----HHhC---CeEEEeeCCCCCCHHH
Confidence 999999987521 1111111111 1111 2348999999999885
No 138
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.41 E-value=9.8e-13 Score=122.70 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=86.2
Q ss_pred EEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhc
Q 009050 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQ 279 (545)
Q Consensus 200 V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~ 279 (545)
|+|+|.+|||||||++.+++..++ ....|+....... .+ .+.+- .
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~---~~~~~~~~~~~~~------------~~------~~~~~----~---------- 45 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP---EDYVPTVFENYSA------------DV------EVDGK----P---------- 45 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC---CCCCCcEEeeeeE------------EE------EECCE----E----------
Confidence 589999999999999999997752 1112221110000 00 00010 0
Q ss_pred CchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEEEE
Q 009050 280 MPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIRVV 356 (545)
Q Consensus 280 ~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~iiiV 356 (545)
..+.++||||... |..+...++..+|++|+++|.++....+... .++..+.. .+.|+++|
T Consensus 46 ------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 108 (174)
T smart00174 46 ------VELGLWDTAGQED-----------YDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILV 108 (174)
T ss_pred ------EEEEEEECCCCcc-----------cchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 2678999999732 1112334578999999999998733233332 35555543 36899999
Q ss_pred ecCCCCCCHHH-HHHHH--------HHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 357 LNKADQVDTQQ-LMRVY--------GALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~~~~-l~~v~--------~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.||+|+..... ..... ......+.+..+.. ..+.+||++|.|+++
T Consensus 109 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~e~Sa~~~~~v~~ 162 (174)
T smart00174 109 GTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAV--KYLECSALTQEGVRE 162 (174)
T ss_pred ecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCc--EEEEecCCCCCCHHH
Confidence 99999875221 11100 00000112222222 237899999999885
No 139
>PTZ00369 Ras-like protein; Provisional
Probab=99.41 E-value=6.8e-12 Score=119.19 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=87.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||++++++..+.. ...|+....... +. .+.+ +.
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~---~~~~t~~~~~~~------------~~------~~~~----~~-------- 52 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFID---EYDPTIEDSYRK------------QC------VIDE----ET-------- 52 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCc---CcCCchhhEEEE------------EE------EECC----EE--------
Confidence 479999999999999999999876421 111221110000 00 0001 00
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.++||||... |..+...+...+|++++++|.++....+....++..+.+ .+.|+
T Consensus 53 --------~~l~i~Dt~G~~~-----------~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~pi 113 (189)
T PTZ00369 53 --------CLLDILDTAGQEE-----------YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPM 113 (189)
T ss_pred --------EEEEEEeCCCCcc-----------chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 2578999999743 112334567899999999999874333344555555432 36699
Q ss_pred EEEecCCCCCCHHHHHHH-HHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v-~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+.+...+... ...+ .+... .+.+.+||++|.|+++
T Consensus 114 iiv~nK~Dl~~~~~i~~~~~~~~----~~~~~---~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 114 ILVGNKCDLDSERQVSTGEGQEL----AKSFG---IPFLETSAKQRVNVDE 157 (189)
T ss_pred EEEEECcccccccccCHHHHHHH----HHHhC---CEEEEeeCCCCCCHHH
Confidence 999999998643221110 1111 11111 2348999999999875
No 140
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.41 E-value=1.1e-12 Score=122.49 Aligned_cols=147 Identities=17% Similarity=0.201 Sum_probs=89.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||++++++..+++ ...|+....... ....+.|.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~---~~~~t~~~~~~~-----------------~~~~~~~~-------------- 47 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK---NYKATIGVDFEM-----------------ERFEILGV-------------- 47 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeeEEEE-----------------EEEEECCE--------------
Confidence 58999999999999999999987532 112222111100 00000010
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC----CCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH----DDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~----~~~ii 354 (545)
-..+.++||||... |..+...++.++|++++++|++..........++..+.+. ..|++
T Consensus 48 ------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii 110 (170)
T cd04108 48 ------PFSLQLWDTAGQER-----------FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLF 110 (170)
T ss_pred ------EEEEEEEeCCChHH-----------HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 02688999999731 2224456689999999999998643344455667665332 24689
Q ss_pred EEecCCCCCCHHHH---HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQL---MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l---~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+..+. .+....+ .+... ...+.+||++|.|+++
T Consensus 111 lVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~---~~~~e~Sa~~g~~v~~ 155 (170)
T cd04108 111 LVGTKKDLSSPAQYALMEQDAIKL----AAEMQ---AEYWSVSALSGENVRE 155 (170)
T ss_pred EEEEChhcCccccccccHHHHHHH----HHHcC---CeEEEEECCCCCCHHH
Confidence 99999998654321 1111111 11112 1237899999999875
No 141
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.41 E-value=1.3e-12 Score=120.51 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=64.2
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC--CCeEEEEecCCCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH--DDKIRVVLNKADQVD 364 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~--~~~iiiVlNK~D~~~ 364 (545)
.+.++||||... +..+...++.++|++++++|.++.....+...++..+... +.|+++|.||+|+.+
T Consensus 53 ~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 53 ELFIFDSAGQEL-----------YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred EEEEEECCCHHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 678999999621 1124456789999999999998743334445666666543 579999999999875
Q ss_pred HHHHHHHH-HHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 365 TQQLMRVY-GALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 365 ~~~l~~v~-~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
..++.... ..+ ..... ...+.+||.++.|+++
T Consensus 122 ~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 122 KAEVTDAQAQAF----AQANQ---LKFFKTSALRGVGYEE 154 (164)
T ss_pred ccCCCHHHHHHH----HHHcC---CeEEEEeCCCCCChHH
Confidence 43222111 111 11111 2237899999999875
No 142
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.41 E-value=1.5e-12 Score=120.30 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=80.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|+|||||+|+|.|... .. . ++.... +.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---~~---~-~~~~v~----------------------~~---------------- 37 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---LA---R-KTQAVE----------------------FN---------------- 37 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---cC---c-cceEEE----------------------EC----------------
Confidence 699999999999999999998652 10 0 000000 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
...+|||||.......... .....+.++|++|+++|++... +. ....+..+ ..+.|+++++|
T Consensus 38 --------~~~~iDtpG~~~~~~~~~~-------~~~~~~~~ad~il~v~d~~~~~-s~-~~~~~~~~-~~~~~ii~v~n 99 (158)
T PRK15467 38 --------DKGDIDTPGEYFSHPRWYH-------ALITTLQDVDMLIYVHGANDPE-SR-LPAGLLDI-GVSKRQIAVIS 99 (158)
T ss_pred --------CCCcccCCccccCCHHHHH-------HHHHHHhcCCEEEEEEeCCCcc-cc-cCHHHHhc-cCCCCeEEEEE
Confidence 1136999998653221111 1123478999999999998632 11 11222222 23578999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 359 KADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 359 K~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+|+.+. +.......+ +..... .+.+++||++|+|+++
T Consensus 100 K~Dl~~~-~~~~~~~~~-----~~~~~~-~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 100 KTDMPDA-DVAATRKLL-----LETGFE-EPIFELNSHDPQSVQQ 137 (158)
T ss_pred ccccCcc-cHHHHHHHH-----HHcCCC-CCEEEEECCCccCHHH
Confidence 9998642 222222111 111221 3448999999999885
No 143
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.41 E-value=2.3e-12 Score=119.47 Aligned_cols=149 Identities=13% Similarity=0.201 Sum_probs=87.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||++++++..+ ..+..++....... ..+.+.+..
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~-----------------~~~~~~~~~------------ 55 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLF---PPGQGATIGVDFMI-----------------KTVEIKGEK------------ 55 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCceeeEEEE-----------------EEEEECCEE------------
Confidence 4799999999999999999997664 11112221111100 000001100
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH---hcCCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL---RGHDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L---~~~~~~ii 354 (545)
-.+.++||||... |......++..+|++++++|.+.....+....++..+ ...+.|++
T Consensus 56 --------~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i 116 (169)
T cd04114 56 --------IKLQIWDTAGQER-----------FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITI 116 (169)
T ss_pred --------EEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 1567899999732 1123345688999999999998632223334555444 34467899
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+..++....... +.+... ...+.+||++|.|+++
T Consensus 117 ~v~NK~D~~~~~~i~~~~~~~---~~~~~~---~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 117 LVGNKIDLAERREVSQQRAEE---FSDAQD---MYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcccccccccCHHHHHH---HHHHcC---CeEEEeeCCCCCCHHH
Confidence 999999987543322211111 112111 2337999999998775
No 144
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.41 E-value=2.6e-12 Score=121.40 Aligned_cols=147 Identities=18% Similarity=0.194 Sum_probs=88.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|..|||||||++.+....+ . ...|+.. .... ++ .+.+
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~--~--~~~pt~g-~~~~------------~~------~~~~-------------- 60 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEI--V--TTIPTIG-FNVE------------TV------EYKN-------------- 60 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--c--cccCCcc-eeEE------------EE------EECC--------------
Confidence 3799999999999999999986553 1 2223221 1110 00 0111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.++||||... +..+...++.++|++|+|+|++..+...+....+..+.. .+.|+
T Consensus 61 --------~~~~i~D~~Gq~~-----------~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~pi 121 (181)
T PLN00223 61 --------ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL 121 (181)
T ss_pred --------EEEEEEECCCCHH-----------HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCE
Confidence 2688999999732 112345668999999999999873322333334444322 35799
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+.+..+..++...+ .+.. +.......+.+||++|+|+.+
T Consensus 122 ilv~NK~Dl~~~~~~~~~~~~l--~l~~-~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 122 LVFANKQDLPNAMNAAEITDKL--GLHS-LRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred EEEEECCCCCCCCCHHHHHHHh--Cccc-cCCCceEEEeccCCCCCCHHH
Confidence 9999999987543333332222 0111 111122335689999999886
No 145
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.41 E-value=2.2e-12 Score=125.19 Aligned_cols=148 Identities=12% Similarity=0.144 Sum_probs=88.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+|++++..+. ....|+....... ....+.+- ..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~---~~~~~T~~~d~~~-----------------~~i~~~~~---~~--------- 49 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFG---KSYKQTIGLDFFS-----------------KRVTLPGN---LN--------- 49 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC---CCCCCceeEEEEE-----------------EEEEeCCC---CE---------
Confidence 5899999999999999999987642 1222322211100 00000000 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc------CCCe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG------HDDK 352 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~------~~~~ 352 (545)
..+.|+||||... |..+...++.++|++|+++|.++....+....++..+.+ .+.|
T Consensus 50 -------~~~~i~Dt~G~~~-----------~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~p 111 (215)
T cd04109 50 -------VTLQVWDIGGQSI-----------GGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPL 111 (215)
T ss_pred -------EEEEEEECCCcHH-----------HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCce
Confidence 2678999999632 112445668999999999999874434444455555543 2357
Q ss_pred EEEEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|.||+|+....... .....+ .+..+ ...+.+||++|.|+++
T Consensus 112 iilVgNK~DL~~~~~v~~~~~~~~----~~~~~---~~~~~iSAktg~gv~~ 156 (215)
T cd04109 112 VVLVGNKTDLEHNRTVKDDKHARF----AQANG---MESCLVSAKTGDRVNL 156 (215)
T ss_pred EEEEEECcccccccccCHHHHHHH----HHHcC---CEEEEEECCCCCCHHH
Confidence 99999999997432111 111111 12122 2347899999999886
No 146
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.41 E-value=8.2e-13 Score=130.43 Aligned_cols=88 Identities=30% Similarity=0.485 Sum_probs=69.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|++||.||+|||||||.|++.+ +.++..|.||...+ | |+..+..
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~---seva~y~FTTl~~V----------P-------------G~l~Y~g--------- 109 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTK---SEVADYPFTTLEPV----------P-------------GMLEYKG--------- 109 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCC---ccccccCceecccc----------c-------------ceEeecC---------
Confidence 99999999999999999999999 88888888876653 3 3222222
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCC
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK 332 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~ 332 (545)
.++.++|+||+..|..+...|+-. +.+.++.||+|++++|+.+
T Consensus 110 -------a~IQild~Pgii~gas~g~grG~~----vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 110 -------AQIQLLDLPGIIEGASSGRGRGRQ----VLSVARNADLIIIVLDVFE 152 (365)
T ss_pred -------ceEEEEcCcccccCcccCCCCcce----eeeeeccCCEEEEEEecCC
Confidence 289999999999977666655443 3355789999999999875
No 147
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.40 E-value=1.1e-12 Score=131.82 Aligned_cols=99 Identities=19% Similarity=0.241 Sum_probs=65.5
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHH
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ 366 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~ 366 (545)
.++++||||..+ |...+..++..+|.+++++|++. +.......+++.+...+.|+++++||+|....
T Consensus 65 ~i~liDtPG~~~-----------f~~~~~~~l~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~- 131 (268)
T cd04170 65 KINLIDTPGYAD-----------FVGETRAALRAADAALVVVSAQS-GVEVGTEKLWEFADEAGIPRIIFINKMDRERA- 131 (268)
T ss_pred EEEEEECcCHHH-----------HHHHHHHHHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECCccCCC-
Confidence 788999999843 11234456789999999999987 45556667777777788999999999998753
Q ss_pred HHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 367 QLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 367 ~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+..+....+...++. .+..+.++...+.++..
T Consensus 132 ~~~~~~~~l~~~~~~-----~~~~~~ip~~~~~~~~~ 163 (268)
T cd04170 132 DFDKTLAALQEAFGR-----PVVPLQLPIGEGDDFKG 163 (268)
T ss_pred CHHHHHHHHHHHhCC-----CeEEEEecccCCCceeE
Confidence 222333333222221 23335566666666554
No 148
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.40 E-value=3.4e-12 Score=120.61 Aligned_cols=146 Identities=17% Similarity=0.191 Sum_probs=87.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||++.+....+ . ...|++ ..... ++ .+.+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~--~--~~~~T~-~~~~~------------~~------~~~~-------------- 60 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEV--V--TTIPTI-GFNVE------------TV------EYKN-------------- 60 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc--c--ccCCcc-ccceE------------EE------EECC--------------
Confidence 4799999999999999999975553 1 122322 11110 00 0001
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH-hc---CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL-RG---HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L-~~---~~~~i 353 (545)
..+.++||||... +..+...++.++|++|+++|++......+....+..+ .. ...|+
T Consensus 61 --------~~~~l~D~~G~~~-----------~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pi 121 (182)
T PTZ00133 61 --------LKFTMWDVGGQDK-----------LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVL 121 (182)
T ss_pred --------EEEEEEECCCCHh-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCE
Confidence 2688999999732 1123456689999999999998633223333334333 22 25799
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||.|+.+.....++...+ +.. .....++.+.+||++|.|+++
T Consensus 122 ilv~NK~Dl~~~~~~~~i~~~l----~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 122 LVFANKQDLPNAMSTTEVTEKL----GLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEEEeCCCCCCCCCHHHHHHHh----CCCcccCCcEEEEeeeCCCCCCHHH
Confidence 9999999986422111222222 211 111223345789999999886
No 149
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.40 E-value=2.6e-12 Score=141.86 Aligned_cols=153 Identities=20% Similarity=0.239 Sum_probs=96.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~~ 277 (545)
+|+++|.+|+|||||+|+|+|... ... +. +..+|+|..... .+.+.+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~--d~~---~e-------------E~~rGiTid~~~~~~~~~~-------------- 49 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAA--DRL---PE-------------EKKRGMTIDLGFAYFPLPD-------------- 49 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccC--cCC---hh-------------HhcCCceEEeEEEEEEeCC--------------
Confidence 589999999999999999998652 111 10 012333332110 011111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe-EEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVV 356 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~-iiiV 356 (545)
..+.||||||.. + |...+...+..+|++++|+|++. +...+..+.+..+...+.+ +++|
T Consensus 50 --------~~v~~iDtPGhe---~--------f~~~~~~g~~~aD~aILVVDa~~-G~~~qT~ehl~il~~lgi~~iIVV 109 (581)
T TIGR00475 50 --------YRLGFIDVPGHE---K--------FISNAIAGGGGIDAALLVVDADE-GVMTQTGEHLAVLDLLGIPHTIVV 109 (581)
T ss_pred --------EEEEEEECCCHH---H--------HHHHHHhhhccCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEE
Confidence 278999999962 1 22234455789999999999987 4555666666666666777 9999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 357 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+||+|+++.+.+..+...+...+........++.+++||++|.|+++
T Consensus 110 lNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~e 156 (581)
T TIGR00475 110 ITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGE 156 (581)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchh
Confidence 99999998654433332221111111111134458999999999885
No 150
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.39 E-value=2.5e-12 Score=119.49 Aligned_cols=149 Identities=17% Similarity=0.110 Sum_probs=86.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||++++++..++ ....++....... ....+.+- .
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~---~~~~~~~~~~~~~-----------------~~~~~~~~----~-------- 53 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFD---TQLFHTIGVEFLN-----------------KDLEVDGH----F-------- 53 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC---cCcCCceeeEEEE-----------------EEEEECCe----E--------
Confidence 37999999999999999999987652 1111111110000 00000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh-------cCC
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR-------GHD 350 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~-------~~~ 350 (545)
..+.|+||||... |..+...+++.+|++++++|.+.....+....++..+. ..+
T Consensus 54 --------~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 114 (170)
T cd04116 54 --------VTLQIWDTAGQER-----------FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPES 114 (170)
T ss_pred --------EEEEEEeCCChHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCC
Confidence 2678999999621 11234456789999999999886333334444544432 135
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 351 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.|+++|.||+|+...+...+....+.. ..... +.+.+||++|.++.+
T Consensus 115 ~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~--~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 115 FPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDY--PYFETSAKDATNVAA 161 (170)
T ss_pred CcEEEEEECccccccccCHHHHHHHHH----HCCCC--eEEEEECCCCCCHHH
Confidence 699999999998632111111112211 11112 337899999988775
No 151
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.39 E-value=1.9e-12 Score=123.98 Aligned_cols=148 Identities=21% Similarity=0.273 Sum_probs=85.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||++++++..+.. ...+++...... .+.+.+. .
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~---~~~~t~~~~~~~------------------~~~~~~~----~--------- 46 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP---KYRRTVEEMHRK------------------EYEVGGV----S--------- 46 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc---cCCCchhhheeE------------------EEEECCE----E---------
Confidence 48999999999999999999877521 111111111100 0001110 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~ii 354 (545)
..+.|+||||... |..+...++..+|++++++|.+.....+....++..+. ..+.|++
T Consensus 47 -------~~l~i~D~~G~~~-----------~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 108 (198)
T cd04147 47 -------LTLDILDTSGSYS-----------FPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIV 108 (198)
T ss_pred -------EEEEEEECCCchh-----------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 1678999999743 11133456789999999999986322233434443332 2468999
Q ss_pred EEecCCCCCCH-HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDT-QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~-~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+... ..+.. .... ..... .. ....+.+||++|.|+++
T Consensus 109 lv~NK~Dl~~~~~~v~~-~~~~--~~~~~-~~-~~~~~~~Sa~~g~gv~~ 153 (198)
T cd04147 109 VVGNKADSLEEERQVPA-KDAL--STVEL-DW-NCGFVETSAKDNENVLE 153 (198)
T ss_pred EEEEccccccccccccH-HHHH--HHHHh-hc-CCcEEEecCCCCCCHHH
Confidence 99999998752 21111 0000 00010 11 12337899999999886
No 152
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.39 E-value=3e-12 Score=123.02 Aligned_cols=149 Identities=17% Similarity=0.285 Sum_probs=90.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|..|||||||+++++...+. . ...++....... ....+.+- .
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~--~-~~~~Ti~~~~~~-----------------~~i~~~~~----~--------- 48 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC--E-ACKSGVGVDFKI-----------------KTVELRGK----K--------- 48 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC--C-cCCCcceeEEEE-----------------EEEEECCE----E---------
Confidence 4889999999999999999976651 1 111221111000 00001110 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~iii 355 (545)
..+.+|||+|... |..+...++.++|++|+|+|.++....+....++..+.. .+.|+++
T Consensus 49 -------v~l~iwDtaGqe~-----------~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piil 110 (202)
T cd04120 49 -------IRLQIWDTAGQER-----------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 110 (202)
T ss_pred -------EEEEEEeCCCchh-----------hHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 2678999999731 223556778999999999999985444555556655543 4579999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+....++...... .+.+... ....+.+||++|.|+++
T Consensus 111 VgNK~DL~~~~~v~~~~~~---~~a~~~~--~~~~~etSAktg~gV~e 153 (202)
T cd04120 111 VGNKLDCETDREISRQQGE---KFAQQIT--GMRFCEASAKDNFNVDE 153 (202)
T ss_pred EEECcccccccccCHHHHH---HHHHhcC--CCEEEEecCCCCCCHHH
Confidence 9999998653322211111 1111111 12337899999999886
No 153
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.39 E-value=1.3e-12 Score=121.12 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=85.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|+|++..++ ....|+....... .. ...+ ..
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~------------~~------~~~~-----~~-------- 47 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP---TEYVPTVFDNYSA------------TV------TVDG-----KQ-------- 47 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeeeEE------------EE------EECC-----EE--------
Confidence 5899999999999999999998752 1222221111000 00 0000 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCc-cHHHHHHHHHHhc--CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDI-SDEFKRVITSLRG--HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~-~~~~~~~l~~L~~--~~~~iii 355 (545)
..+.++||||...-. . ........+|++++++|+++... ......++..+.. .+.|+++
T Consensus 48 -------~~l~~~D~~g~~~~~--~---------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iv 109 (171)
T cd00157 48 -------VNLGLWDTAGQEEYD--R---------LRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIIL 109 (171)
T ss_pred -------EEEEEEeCCCccccc--c---------cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEE
Confidence 167899999974311 1 12234589999999999986221 1122234544433 3589999
Q ss_pred EecCCCCCCHHHHHH--------HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMR--------VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~--------v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+........ +.........+..... ..+.+||++|.|+.+
T Consensus 110 v~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~ 163 (171)
T cd00157 110 VGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAI--GYMECSALTQEGVKE 163 (171)
T ss_pred EEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCe--EEEEeecCCCCCHHH
Confidence 999999876543210 0000000111112222 338899999999875
No 154
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.39 E-value=2.1e-12 Score=115.50 Aligned_cols=131 Identities=22% Similarity=0.279 Sum_probs=87.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
+|+|+|+.|||||||+++|.|.+. ... . | . .+.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~-K---T-q---------------------------~i~------------- 35 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYK-K---T-Q---------------------------AIE------------- 35 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcC-c---c-c---------------------------eeE-------------
Confidence 689999999999999999999874 110 0 0 0 000
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCC--ccHHHHHHHHHHhcCCCeEEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD--ISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~--~~~~~~~~l~~L~~~~~~iiiV 356 (545)
..=.+|||||-.-..+.. | ......+.+||+|+++.|++... ....+... .+.|+|-|
T Consensus 36 -------~~~~~IDTPGEyiE~~~~------y-~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~------f~~pvIGV 95 (143)
T PF10662_consen 36 -------YYDNTIDTPGEYIENPRF------Y-HALIVTAQDADVVLLLQDATEPRSVFPPGFASM------FNKPVIGV 95 (143)
T ss_pred -------ecccEEECChhheeCHHH------H-HHHHHHHhhCCEEEEEecCCCCCccCCchhhcc------cCCCEEEE
Confidence 012469999987522211 1 12234467999999999998721 12223222 35799999
Q ss_pred ecCCCCC-CHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 357 LNKADQV-DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~-~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+|+. +.+++.+....+ +..+..++ |.+|+.+|+|+++
T Consensus 96 ITK~Dl~~~~~~i~~a~~~L-----~~aG~~~i--f~vS~~~~eGi~e 136 (143)
T PF10662_consen 96 ITKIDLPSDDANIERAKKWL-----KNAGVKEI--FEVSAVTGEGIEE 136 (143)
T ss_pred EECccCccchhhHHHHHHHH-----HHcCCCCe--EEEECCCCcCHHH
Confidence 9999998 556666665554 23345566 8999999999886
No 155
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.38 E-value=3.1e-12 Score=138.08 Aligned_cols=169 Identities=22% Similarity=0.286 Sum_probs=99.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCC----------CCcccc----eEEEEeCCCccccCCceeEeec-CCCCC
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP----------EPTTDR----FVVVMSGVDDRSIPGNTVAVQA-DMPFS 262 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~----------~p~t~r----~~i~~~~~~~~~~~g~t~~~~~-~~~~~ 262 (545)
..|+++|+.++|||||+++|+...- .+... ...+++ ...++....++...|.|+.... .+.+.
T Consensus 28 ~~i~iiGhvdaGKSTL~~~LL~~~g--~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 28 LRFLTCGSVDDGKSTLIGRLLHDTK--QIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred eEEEEECCCCCChHHHHHHHHHhcC--CCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 3799999999999999999997763 33221 123321 2234455555667788774321 11111
Q ss_pred CcccccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHH
Q 009050 263 GLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRV 342 (545)
Q Consensus 263 gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~ 342 (545)
+ .++.|+||||... |...+...+..+|++++++|+.. ++.....+.
T Consensus 106 ~----------------------~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~-G~~~qt~~~ 151 (474)
T PRK05124 106 K----------------------RKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARK-GVLDQTRRH 151 (474)
T ss_pred C----------------------cEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCC-CccccchHH
Confidence 1 3789999999521 11122233689999999999976 443333332
Q ss_pred HHHHhcCC-CeEEEEecCCCCCCH--HHHHHHHHHHHHHhccccc-CCccEEEEeeccCCCccCc
Q 009050 343 ITSLRGHD-DKIRVVLNKADQVDT--QQLMRVYGALMWSLGKVLN-TPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 343 l~~L~~~~-~~iiiVlNK~D~~~~--~~l~~v~~~l~~~l~k~~~-~~~v~~v~iSa~~~~~~~~ 403 (545)
+..+...+ .++++|+||+|+++. +.+.++...+.. +.+... ...+..+++||++|.++..
T Consensus 152 ~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~iipvSA~~g~ni~~ 215 (474)
T PRK05124 152 SFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLT-FAEQLPGNLDIRFVPLSALEGDNVVS 215 (474)
T ss_pred HHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHH-HHHhcCCCCCceEEEEEeecCCCccc
Confidence 22222223 478999999999842 223333332211 111111 2234558999999999986
No 156
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.38 E-value=5.9e-12 Score=115.38 Aligned_cols=147 Identities=20% Similarity=0.266 Sum_probs=86.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|+|||||+|++++..+ .. ...++++...... ...+.+. .
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~--~~-~~~~~~~~~~~~~-----------------~~~~~~~----~--------- 48 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKF--NE-KHESTTQASFFQK-----------------TVNIGGK----R--------- 48 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-CcCCccceeEEEE-----------------EEEECCE----E---------
Confidence 589999999999999999998775 21 1122221111100 0000000 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~iii 355 (545)
..+.++||||... +......++.++|.+++++|.++.........++..+. ..+.|+++
T Consensus 49 -------~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piii 110 (162)
T cd04123 49 -------IDLAIWDTAGQER-----------YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVI 110 (162)
T ss_pred -------EEEEEEECCchHH-----------HHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 1678999999521 11234556789999999999987433333444444443 23679999
Q ss_pred EecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.....+. +....+. +.. ....+++|++++.|+++
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~~----~~~---~~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 111 VGNKIDLERQRVVSKSEAEEYA----KSV---GAKHFETSAKTGKGIEE 152 (162)
T ss_pred EEECcccccccCCCHHHHHHHH----HHc---CCEEEEEeCCCCCCHHH
Confidence 99999987432211 1111111 111 12237899999999875
No 157
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.38 E-value=2.7e-12 Score=136.30 Aligned_cols=168 Identities=20% Similarity=0.254 Sum_probs=102.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCC----------Ccc----cceEEEEeCCCccccCCceeEeec-CCCCCC
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPE----------PTT----DRFVVVMSGVDDRSIPGNTVAVQA-DMPFSG 263 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~----------p~t----~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~g 263 (545)
.|+++|+.++|||||+++|+...- .+.... ..+ .....++....++...|.|+.... .+.+.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g--~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~ 79 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTK--QIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK 79 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcC--CcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC
Confidence 589999999999999999987653 222110 112 223345555556667788774321 111111
Q ss_pred cccccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHH
Q 009050 264 LTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVI 343 (545)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l 343 (545)
.++.|+||||... |...+...+..+|++|+++|+.. +...+..+.+
T Consensus 80 ----------------------~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~-G~~~qt~~~~ 125 (406)
T TIGR02034 80 ----------------------RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARK-GVLEQTRRHS 125 (406)
T ss_pred ----------------------eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCccccHHHH
Confidence 3789999999621 21123345789999999999986 5555555444
Q ss_pred HHHhcCCC-eEEEEecCCCCCCH-HH-HHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 344 TSLRGHDD-KIRVVLNKADQVDT-QQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 344 ~~L~~~~~-~iiiVlNK~D~~~~-~~-l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
..+...+. ++++++||+|+.+. ++ +.++...+. .+.+...+..++.+++||++|.|+..
T Consensus 126 ~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 126 YIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYL-AFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHH-HHHHHcCCCCccEEEeecccCCCCcc
Confidence 44444344 58899999999852 22 222222211 11122233444558999999999986
No 158
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.38 E-value=2.9e-12 Score=126.20 Aligned_cols=144 Identities=22% Similarity=0.269 Sum_probs=88.0
Q ss_pred EEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhhhhhh
Q 009050 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 200 V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
|+++|+.|+|||||+++|+...- .+.... .....+..+.....+...|.++... ..+.+.+
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g--~i~~~g-~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--------------- 63 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSG--AIRKLG-SVDKGTTRTDTMELERQRGITIFSAVASFQWED--------------- 63 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC--Cccccc-cccCCcccCCCchhHhhCCCceeeeeEEEEECC---------------
Confidence 79999999999999999997642 211100 0000001111111222344444211 1111211
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
.+++++||||... |...+...+..+|.+++++|+.. +.......+++.+...+.|+++++|
T Consensus 64 -------~~i~liDTPG~~~-----------f~~~~~~~l~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~~~P~iivvN 124 (237)
T cd04168 64 -------TKVNLIDTPGHMD-----------FIAEVERSLSVLDGAILVISAVE-GVQAQTRILWRLLRKLNIPTIIFVN 124 (237)
T ss_pred -------EEEEEEeCCCccc-----------hHHHHHHHHHHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 3789999999853 22234456789999999999987 5666677788878778899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcc
Q 009050 359 KADQVDTQQLMRVYGALMWSLGK 381 (545)
Q Consensus 359 K~D~~~~~~l~~v~~~l~~~l~k 381 (545)
|+|+... +..+++..+...++.
T Consensus 125 K~D~~~a-~~~~~~~~i~~~~~~ 146 (237)
T cd04168 125 KIDRAGA-DLEKVYQEIKEKLSS 146 (237)
T ss_pred CccccCC-CHHHHHHHHHHHHCC
Confidence 9998742 233444444333443
No 159
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.38 E-value=7.4e-12 Score=117.15 Aligned_cols=147 Identities=16% Similarity=0.206 Sum_probs=87.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||++.+.+..+++ ...|+.. .... ..+. +.+- .
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f~~---~~~~t~~-~~~~-----------~~~~------~~~~----~--------- 49 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSFPD---YHDPTIE-DAYK-----------QQAR------IDNE----P--------- 49 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC---CcCCccc-ceEE-----------EEEE------ECCE----E---------
Confidence 68999999999999999999877521 1112211 1100 0000 0010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---c-CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---G-HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~-~~~~ii 354 (545)
..+.|+||||... |..+...++..+|.+++++|.++........+++..+. . .+.|++
T Consensus 50 -------~~l~i~Dt~G~~~-----------~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pii 111 (172)
T cd04141 50 -------ALLDILDTAGQAE-----------FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLV 111 (172)
T ss_pred -------EEEEEEeCCCchh-----------hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 1678999999732 22244556789999999999987443344444433332 2 467999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+...+..... . .+.+..+ .+.+.+||++|.|+++
T Consensus 112 lvgNK~Dl~~~~~v~~~~~-~--~~a~~~~---~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 112 LVGNKVDLESQRQVTTEEG-R--NLAREFN---CPFFETSAALRHYIDD 154 (172)
T ss_pred EEEEChhhhhcCccCHHHH-H--HHHHHhC---CEEEEEecCCCCCHHH
Confidence 9999999864322211111 0 1122222 2347899999999885
No 160
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.38 E-value=1.5e-11 Score=119.12 Aligned_cols=148 Identities=20% Similarity=0.309 Sum_probs=89.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|++|||||||+|.+++..+ .... .|+....... .++... .+.
T Consensus 4 KIvvvG~~~vGKTsLi~~l~~~~~--~~~~-~~ti~~d~~~-----------~~i~~~-----~~~-------------- 50 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTEGRF--AEVS-DPTVGVDFFS-----------RLIEIE-----PGV-------------- 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CCCC-CceeceEEEE-----------EEEEEC-----CCC--------------
Confidence 699999999999999999998775 2221 1222111100 000000 000
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ii 354 (545)
...+.++||||... |..+...++.++|.+++++|.++....+...+++..+.. ...+++
T Consensus 51 ------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~ii 113 (211)
T cd04111 51 ------RIKLQLWDTAGQER-----------FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFI 113 (211)
T ss_pred ------EEEEEEEeCCcchh-----------HHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 01678999999632 222455678999999999999874434445555555432 345789
Q ss_pred EEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+...+.. ....+ .+..+ +..+.+||++|.|+++
T Consensus 114 lvgNK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~e~Sak~g~~v~e 156 (211)
T cd04111 114 LVGHKCDLESQRQVTREEAEKL----AKDLG---MKYIETSARTGDNVEE 156 (211)
T ss_pred EEEEccccccccccCHHHHHHH----HHHhC---CEEEEEeCCCCCCHHH
Confidence 9999999875322111 11111 12222 3347899999999875
No 161
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.37 E-value=3.2e-12 Score=119.29 Aligned_cols=149 Identities=21% Similarity=0.180 Sum_probs=87.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||++++++..+ ......|++...... .++ .+.|- .
T Consensus 6 kv~~vG~~~vGKTsli~~~~~~~f--~~~~~~~T~~~~~~~-----------~~~------~~~~~-----~-------- 53 (169)
T cd01892 6 LCFVLGAKGSGKSALLRAFLGRSF--SLNAYSPTIKPRYAV-----------NTV------EVYGQ-----E-------- 53 (169)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC--CcccCCCccCcceEE-----------EEE------EECCe-----E--------
Confidence 799999999999999999999875 212223332211100 000 00010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc-CCCeEEEEe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-HDDKIRVVL 357 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVl 357 (545)
..+.++||+|..... .+...++.++|++|+++|+++....+....+++.+.. .+.|+++|.
T Consensus 54 -------~~l~~~d~~g~~~~~-----------~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~ 115 (169)
T cd01892 54 -------KYLILREVGEDEVAI-----------LLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVA 115 (169)
T ss_pred -------EEEEEEecCCccccc-----------ccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 156789999874311 1223446899999999999873322333455555532 368999999
Q ss_pred cCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+.+.... ......+ .+..+...+ +.+||.+|.|+++
T Consensus 116 NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~--~~~Sa~~~~~v~~ 156 (169)
T cd01892 116 AKADLDEQQQRYEVQPDEF----CRKLGLPPP--LHFSSKLGDSSNE 156 (169)
T ss_pred EcccccccccccccCHHHH----HHHcCCCCC--EEEEeccCccHHH
Confidence 99998643211 0001111 122233334 7899999998774
No 162
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.37 E-value=2.1e-12 Score=145.96 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=101.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+|+|++|+|||||+|+|++..- . +.....+...+..+.....+..+|+|+... ..+.+.+
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~~g--~-~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~-------------- 74 (689)
T TIGR00484 12 NIGISAHIDAGKTTTTERILFYTG--R-IHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG-------------- 74 (689)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC--C-ccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--------------
Confidence 799999999999999999986542 1 111111111223333344445677776432 2222322
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
.+++|+||||...- ...+...+..+|++++++|+.. +...+...++..+...+.|+++|+
T Consensus 75 --------~~i~liDTPG~~~~-----------~~~~~~~l~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~p~ivvi 134 (689)
T TIGR00484 75 --------HRINIIDTPGHVDF-----------TVEVERSLRVLDGAVAVLDAVG-GVQPQSETVWRQANRYEVPRIAFV 134 (689)
T ss_pred --------eEEEEEECCCCcch-----------hHHHHHHHHHhCEEEEEEeCCC-CCChhHHHHHHHHHHcCCCEEEEE
Confidence 38999999999641 1124456789999999999987 566777788888888889999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCC
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFND 398 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~ 398 (545)
||+|+.... ..++...+...++.. .. ...+++|+..+
T Consensus 135 NK~D~~~~~-~~~~~~~i~~~l~~~-~~--~~~ipis~~~~ 171 (689)
T TIGR00484 135 NKMDKTGAN-FLRVVNQIKQRLGAN-AV--PIQLPIGAEDN 171 (689)
T ss_pred ECCCCCCCC-HHHHHHHHHHHhCCC-ce--eEEeccccCCC
Confidence 999998532 334444443333321 11 22367887666
No 163
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.37 E-value=7.1e-12 Score=118.52 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=85.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|+|||||+|++++..++ ....|++...... .+. ..+ +.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~---~~~~~t~~~~~~~------------~i~------~~~----~~--------- 47 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP---EEYVPTVFENYVT------------NIQ------GPN----GK--------- 47 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC---CCCCCeeeeeeEE------------EEE------ecC----Cc---------
Confidence 5899999999999999999988752 1122221111000 000 000 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~iii 355 (545)
...+.++||||... |..+...+..++|++++++|.++....+... .++..+.. .+.|+++
T Consensus 48 ------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 110 (187)
T cd04132 48 ------IIELALWDTAGQEE-----------YDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIML 110 (187)
T ss_pred ------EEEEEEEECCCchh-----------HHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 02678999999632 1113344678999999999998733223332 24444432 3579999
Q ss_pred EecCCCCCCHHH----H-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQ----L-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~----l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+..... + ......+ .+..+.. ..+.+||++|.++++
T Consensus 111 v~nK~Dl~~~~~~~~~v~~~~~~~~----~~~~~~~--~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 111 VGLKTDLRKDKNLDRKVTPAQAESV----AKKQGAF--AYLECSAKTMENVEE 157 (187)
T ss_pred EEeChhhhhCccccCCcCHHHHHHH----HHHcCCc--EEEEccCCCCCCHHH
Confidence 999999864221 0 0001111 1111221 238999999999875
No 164
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.37 E-value=1.6e-11 Score=116.40 Aligned_cols=147 Identities=17% Similarity=0.251 Sum_probs=88.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+|++++..+ .. ...|+....... ....+.+- .
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~--~~-~~~~t~~~~~~~-----------------~~~~~~~~----~--------- 48 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEF--SE-STKSTIGVDFKI-----------------KTVYIENK----I--------- 48 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC-CCCCceeeEEEE-----------------EEEEECCE----E---------
Confidence 589999999999999999998775 21 111221111100 00000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~iii 355 (545)
..+.++||||... |......++.++|++++++|.++.........++..+.. ...|+++
T Consensus 49 -------~~~~i~Dt~g~~~-----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~iv 110 (188)
T cd04125 49 -------IKLQIWDTNGQER-----------FRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVI 110 (188)
T ss_pred -------EEEEEEECCCcHH-----------HHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 2678999999621 122456678999999999999874433444555555543 3578999
Q ss_pred EecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.+...+.. ....+ .+... +..+.+||++|.++++
T Consensus 111 v~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~evSa~~~~~i~~ 152 (188)
T cd04125 111 VANKSDLVNNKVVDSNIAKSF----CDSLN---IPFFETSAKQSINVEE 152 (188)
T ss_pred EEECCCCcccccCCHHHHHHH----HHHcC---CeEEEEeCCCCCCHHH
Confidence 999999874322111 11111 11111 2337999999998875
No 165
>PRK12736 elongation factor Tu; Reviewed
Probab=99.37 E-value=7.5e-12 Score=132.47 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=98.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|+.++|||||+++|++... ..+.. .. .....+.....+..+|+|+.... ..|.. +.
T Consensus 14 ni~i~Ghvd~GKSTL~~~L~~~~~---~~g~~-~~-~~~~~~d~~~~E~~rg~T~~~~~-~~~~~----~~--------- 74 (394)
T PRK12736 14 NIGTIGHVDHGKTTLTAAITKVLA---ERGLN-QA-KDYDSIDAAPEEKERGITINTAH-VEYET----EK--------- 74 (394)
T ss_pred EEEEEccCCCcHHHHHHHHHhhhh---hhccc-cc-cchhhhcCCHHHHhcCccEEEEe-eEecC----CC---------
Confidence 799999999999999999997542 11110 00 00011222334456777774321 11110 01
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe-EEEEe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVVL 357 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~-iiiVl 357 (545)
.++.|+||||... |...+...+..+|++++++|+.. +......+.+..+...+.| +++++
T Consensus 75 -------~~i~~iDtPGh~~-----------f~~~~~~~~~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~g~~~~Ivvi 135 (394)
T PRK12736 75 -------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVAATD-GPMPQTREHILLARQVGVPYLVVFL 135 (394)
T ss_pred -------cEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCEEEEEE
Confidence 3789999999621 11123344678999999999986 5667777788877777887 67899
Q ss_pred cCCCCCCHHHHHHH-HHHHHHHhccc-ccCCccEEEEeeccCCC
Q 009050 358 NKADQVDTQQLMRV-YGALMWSLGKV-LNTPEVVRVYIGSFNDK 399 (545)
Q Consensus 358 NK~D~~~~~~l~~v-~~~l~~~l~k~-~~~~~v~~v~iSa~~~~ 399 (545)
||+|+++.++..+. ...+...+... +....++.+++||++|.
T Consensus 136 NK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 136 NKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred EecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 99999865544332 22222112211 11123455899999984
No 166
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.37 E-value=1.7e-11 Score=117.50 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=88.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||++.+++..+.+ ...|+....... .+ ..+.|. .
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~---~~~~t~~~~~~~-----------~~------~~~~~~----~-------- 54 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSG---SYITTIGVDFKI-----------RT------VEINGE----R-------- 54 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC---CcCccccceeEE-----------EE------EEECCE----E--------
Confidence 479999999999999999999877521 111211100000 00 000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc--CCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~--~~~~iii 355 (545)
..+.|+||||... |..+...++..+|++++++|+++....+....++..+.. ...|+++
T Consensus 55 --------~~l~l~D~~G~~~-----------~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piiv 115 (199)
T cd04110 55 --------VKLQIWDTAGQER-----------FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVL 115 (199)
T ss_pred --------EEEEEEeCCCchh-----------HHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 1578999999622 112345567899999999999874333445556666543 2468999
Q ss_pred EecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.....+. +....+ .+..+ ...+.+||++|.|+++
T Consensus 116 VgNK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 116 VGNKNDDPERKVVETEDAYKF----AGQMG---ISLFETSAKENINVEE 157 (199)
T ss_pred EEECcccccccccCHHHHHHH----HHHcC---CEEEEEECCCCcCHHH
Confidence 99999987532211 111111 11111 2347899999999875
No 167
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.37 E-value=7.4e-12 Score=137.56 Aligned_cols=131 Identities=22% Similarity=0.300 Sum_probs=77.8
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc-ccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT-TDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~-t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
.|+|+++|.+|+|||||+|+|.+..+ . ..++. +|+..-....+ .....+..-.......+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~--~~e~ggiTq~iG~~~v~-~~~~~~~~~~~~~~~~v-------------- 64 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--A--KREAGGITQHIGATEIP-MDVIEGICGDLLKKFKI-------------- 64 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--c--cccCCceecccCeeEee-ecccccccccccccccc--------------
Confidence 46999999999999999999999875 2 12222 22110000000 00000000000000000
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
.--...+.|+||||... |..+....+..+|++++++|++. +...+..+.+..++..+.|+++
T Consensus 65 ------~~~~~~l~~iDTpG~e~-----------f~~l~~~~~~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~~vpiIV 126 (590)
T TIGR00491 65 ------RLKIPGLLFIDTPGHEA-----------FTNLRKRGGALADLAILIVDINE-GFKPQTQEALNILRMYKTPFVV 126 (590)
T ss_pred ------ccccCcEEEEECCCcHh-----------HHHHHHHHHhhCCEEEEEEECCc-CCCHhHHHHHHHHHHcCCCEEE
Confidence 00002588999999732 12233345689999999999986 4556666777777777889999
Q ss_pred EecCCCCCC
Q 009050 356 VLNKADQVD 364 (545)
Q Consensus 356 VlNK~D~~~ 364 (545)
++||+|+..
T Consensus 127 v~NK~Dl~~ 135 (590)
T TIGR00491 127 AANKIDRIP 135 (590)
T ss_pred EEECCCccc
Confidence 999999974
No 168
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.37 E-value=7.3e-12 Score=124.10 Aligned_cols=146 Identities=18% Similarity=0.244 Sum_probs=87.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||++++++..++. ...|++...... . ..+.+ ..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~---~y~pTi~d~~~k------------~------~~i~~-----~~-------- 47 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE---QYTPTIEDFHRK------------L------YSIRG-----EV-------- 47 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC---CCCCChhHhEEE------------E------EEECC-----EE--------
Confidence 58999999999999999999877521 122222111100 0 00001 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----------
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---------- 348 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---------- 348 (545)
..+.||||+|... |..+...++..+|++|+++|.++....++...+++++..
T Consensus 48 -------~~l~I~Dt~G~~~-----------~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~ 109 (247)
T cd04143 48 -------YQLDILDTSGNHP-----------FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTK 109 (247)
T ss_pred -------EEEEEEECCCChh-----------hhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 2678999999742 111223346799999999999874333444555555532
Q ss_pred --CCCeEEEEecCCCCCCHHH--HHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 349 --HDDKIRVVLNKADQVDTQQ--LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 349 --~~~~iiiVlNK~D~~~~~~--l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.+.|+++|.||+|+....+ ..++...+ +.. .....+.+||++|.|+++
T Consensus 110 ~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~----~~~---~~~~~~evSAktg~gI~e 161 (247)
T cd04143 110 ENVKIPMVICGNKADRDFPREVQRDEVEQLV----GGD---ENCAYFEVSAKKNSNLDE 161 (247)
T ss_pred cCCCCcEEEEEECccchhccccCHHHHHHHH----Hhc---CCCEEEEEeCCCCCCHHH
Confidence 3579999999999864211 11111111 111 122348899999999886
No 169
>PLN03110 Rab GTPase; Provisional
Probab=99.37 E-value=9.7e-12 Score=120.84 Aligned_cols=148 Identities=19% Similarity=0.232 Sum_probs=91.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||+++|++..+ .....|+....... ..+.+.+. .
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~---~~~~~~t~g~~~~~-----------------~~v~~~~~----~-------- 60 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEF---CLESKSTIGVEFAT-----------------RTLQVEGK----T-------- 60 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeEEEEE-----------------EEEEECCE----E--------
Confidence 4899999999999999999998775 22222222111100 00000110 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~ii 354 (545)
..+.|+||||... |..+...++..++.+|+++|.+.....+....++..+.. .+.|++
T Consensus 61 --------~~l~l~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 121 (216)
T PLN03110 61 --------VKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIM 121 (216)
T ss_pred --------EEEEEEECCCcHH-----------HHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 1678999999632 222455678999999999999874444455566665543 467999
Q ss_pred EEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+....++. +....+ .... ..+.+.+||+.|.++++
T Consensus 122 iv~nK~Dl~~~~~~~~~~~~~l----~~~~---~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 122 MAGNKSDLNHLRSVAEEDGQAL----AEKE---GLSFLETSALEATNVEK 164 (216)
T ss_pred EEEEChhcccccCCCHHHHHHH----HHHc---CCEEEEEeCCCCCCHHH
Confidence 999999986432221 111111 1211 23448899999999875
No 170
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.36 E-value=7.4e-12 Score=115.69 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=88.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|+|||||++.+++..+. ....|+....... ....+.+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~---~~~~~t~~~~~~~-----------------~~~~~~~~-------------- 47 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH---SSHISTIGVDFKM-----------------KTIEVDGI-------------- 47 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC---CCCCCceeeEEEE-----------------EEEEECCE--------------
Confidence 5899999999999999999987752 1112221111100 00000110
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~iii 355 (545)
...+.++||||... |..+...+...+|++++++|.++....++...++..+.. .+.|+++
T Consensus 48 ------~~~l~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iil 110 (161)
T cd04117 48 ------KVRIQIWDTAGQER-----------YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKIL 110 (161)
T ss_pred ------EEEEEEEeCCCcHh-----------HHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 02678999999632 112344567899999999999874444455566665433 3579999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.....+....... +.+... ...+.+||++|.|+++
T Consensus 111 vgnK~Dl~~~~~v~~~~~~~---~~~~~~---~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 111 IGNKADEEQKRQVGDEQGNK---LAKEYG---MDFFETSACTNSNIKE 152 (161)
T ss_pred EEECcccccccCCCHHHHHH---HHHHcC---CEEEEEeCCCCCCHHH
Confidence 99999986533221111111 112222 2237899999998875
No 171
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.36 E-value=2.8e-12 Score=121.88 Aligned_cols=151 Identities=24% Similarity=0.280 Sum_probs=87.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|.+|||||||++++++..++.. ..|+....... .+. ..+. .
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~---~~~t~~~~~~~------------~i~------~~~~----~--------- 47 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV---YEPTVFENYVH------------DIF------VDGL----H--------- 47 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc---cCCcceeeeEE------------EEE------ECCE----E---------
Confidence 589999999999999999998776321 11221110000 000 0010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~iii 355 (545)
..+.|+||||... |..+...+...+|++++++|.++....+... .++..+.. .+.|+++
T Consensus 48 -------~~l~i~Dt~G~~~-----------~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piil 109 (189)
T cd04134 48 -------IELSLWDTAGQEE-----------FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVL 109 (189)
T ss_pred -------EEEEEEECCCChh-----------ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 2678999999732 1112233468999999999988733222232 35666544 3679999
Q ss_pred EecCCCCCCHHHHHHHHHH---------HHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~---------l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.+..+....... ....+.+... ....+.+||++|.|+++
T Consensus 110 vgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~SAk~~~~v~e 164 (189)
T cd04134 110 VALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN--ALRYLECSAKLNRGVNE 164 (189)
T ss_pred EEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC--CCEEEEccCCcCCCHHH
Confidence 9999999754332211100 0001111111 23347899999999886
No 172
>PLN03118 Rab family protein; Provisional
Probab=99.36 E-value=5.4e-12 Score=122.08 Aligned_cols=148 Identities=19% Similarity=0.238 Sum_probs=86.7
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+|+|++|||||||+++|++..+ ....+..+.+..... +.+.+. .
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~--~~~~~t~~~~~~~~~-------------------~~~~~~----~------- 61 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV--EDLAPTIGVDFKIKQ-------------------LTVGGK----R------- 61 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC--CCcCCCceeEEEEEE-------------------EEECCE----E-------
Confidence 34899999999999999999998775 322221111110000 000010 0
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHH-HHHHHh----cCCC
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKR-VITSLR----GHDD 351 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~-~l~~L~----~~~~ 351 (545)
..+.|+||||... |..+...++..+|++|+++|.++......... +...+. ..+.
T Consensus 62 ---------~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~ 121 (211)
T PLN03118 62 ---------LKLTIWDTAGQER-----------FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDC 121 (211)
T ss_pred ---------EEEEEEECCCchh-----------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2678999999743 11234456789999999999987332223322 222222 2356
Q ss_pred eEEEEecCCCCCCHHHHHHH-HHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 352 KIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 352 ~iiiVlNK~D~~~~~~l~~v-~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++++|.||+|+.....+... ...+ .+.. ....+.+||+++.++++
T Consensus 122 ~~ilv~NK~Dl~~~~~i~~~~~~~~----~~~~---~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 122 VKMLVGNKVDRESERDVSREEGMAL----AKEH---GCLFLECSAKTRENVEQ 167 (211)
T ss_pred CEEEEEECccccccCccCHHHHHHH----HHHc---CCEEEEEeCCCCCCHHH
Confidence 89999999998743222111 1111 1111 12347899999999885
No 173
>PLN03127 Elongation factor Tu; Provisional
Probab=99.36 E-value=5.9e-12 Score=134.73 Aligned_cols=159 Identities=22% Similarity=0.227 Sum_probs=97.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEE--EEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVV--VMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i--~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
.|+++|+.++|||||+++|++... ..+.. +... .+....++..+|+|+.... ..|. . ++
T Consensus 63 ni~iiGhvd~GKSTL~~~L~~~~~---~~g~~----~~~~~~~~D~~~~E~~rGiTi~~~~-~~~~---~-~~------- 123 (447)
T PLN03127 63 NVGTIGHVDHGKTTLTAAITKVLA---EEGKA----KAVAFDEIDKAPEEKARGITIATAH-VEYE---T-AK------- 123 (447)
T ss_pred EEEEECcCCCCHHHHHHHHHhHHH---Hhhcc----cceeeccccCChhHhhcCceeeeeE-EEEc---C-CC-------
Confidence 699999999999999999986531 11111 0000 1222234456788774321 1111 0 01
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe-EEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRV 355 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~-iii 355 (545)
.++.|+||||... |...+...+..+|++++++|+.. +...++.+.+..+...+.| +++
T Consensus 124 ---------~~i~~iDtPGh~~-----------f~~~~~~g~~~aD~allVVda~~-g~~~qt~e~l~~~~~~gip~iIv 182 (447)
T PLN03127 124 ---------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVV 182 (447)
T ss_pred ---------eEEEEEECCCccc-----------hHHHHHHHHhhCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEE
Confidence 3789999999843 21223344567999999999986 5677788888888888888 578
Q ss_pred EecCCCCCCHHHHHHHHH-HHHHHhcccccC--CccEEEEeeccCC
Q 009050 356 VLNKADQVDTQQLMRVYG-ALMWSLGKVLNT--PEVVRVYIGSFND 398 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~-~l~~~l~k~~~~--~~v~~v~iSa~~~ 398 (545)
++||+|+++.+++.+... .+...+. .+.+ ..++.+++|+..+
T Consensus 183 viNKiDlv~~~~~~~~i~~~i~~~l~-~~~~~~~~vpiip~Sa~sa 227 (447)
T PLN03127 183 FLNKVDVVDDEELLELVEMELRELLS-FYKFPGDEIPIIRGSALSA 227 (447)
T ss_pred EEEeeccCCHHHHHHHHHHHHHHHHH-HhCCCCCcceEEEecccee
Confidence 999999987544433322 2211111 1112 2456678887644
No 174
>PLN03108 Rab family protein; Provisional
Probab=99.36 E-value=2.1e-11 Score=117.93 Aligned_cols=148 Identities=14% Similarity=0.184 Sum_probs=87.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|++++..+ ... ..|+....... ....+.+- .
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~--~~~-~~~ti~~~~~~-----------------~~i~~~~~----~-------- 54 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRF--QPV-HDLTIGVEFGA-----------------RMITIDNK----P-------- 54 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CCC-CCCCccceEEE-----------------EEEEECCE----E--------
Confidence 3799999999999999999998875 221 11211110000 00000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~ii 354 (545)
..+.++||||... +..+...++..+|.+++++|.+..........++..+. ....|++
T Consensus 55 --------i~l~l~Dt~G~~~-----------~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~pii 115 (210)
T PLN03108 55 --------IKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 115 (210)
T ss_pred --------EEEEEEeCCCcHH-----------HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 1578999999632 11234556789999999999987433344445555443 2367999
Q ss_pred EEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.....+. +....+ .+... ++.+.+||+++.++++
T Consensus 116 iv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 116 LIGNKCDLAHRRAVSTEEGEQF----AKEHG---LIFMEASAKTAQNVEE 158 (210)
T ss_pred EEEECccCccccCCCHHHHHHH----HHHcC---CEEEEEeCCCCCCHHH
Confidence 999999986532111 111111 11111 2347899999999875
No 175
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.36 E-value=2.6e-11 Score=117.92 Aligned_cols=110 Identities=24% Similarity=0.389 Sum_probs=72.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||++++++..++ . ..|+........ .+ +.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~--~--~~~Tig~~~~~~-------------------~~------~~--------- 43 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK--D--TVSTVGGAFYLK-------------------QW------GP--------- 43 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--C--CCCccceEEEEE-------------------Ee------eE---------
Confidence 5899999999999999999988752 1 122221111000 00 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~iii 355 (545)
..+.||||||... |..+...+...+|++|+++|.+.....+....++..+.+ .+.|+++
T Consensus 44 -------~~l~iwDt~G~e~-----------~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIl 105 (220)
T cd04126 44 -------YNISIWDTAGREQ-----------FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAV 105 (220)
T ss_pred -------EEEEEEeCCCccc-----------chhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 2688999999732 122445568899999999999874333444444444432 3579999
Q ss_pred EecCCCCCC
Q 009050 356 VLNKADQVD 364 (545)
Q Consensus 356 VlNK~D~~~ 364 (545)
|.||+|+.+
T Consensus 106 VgNK~DL~~ 114 (220)
T cd04126 106 VGNKLDLTE 114 (220)
T ss_pred EEECccccc
Confidence 999999865
No 176
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.2e-12 Score=133.25 Aligned_cols=163 Identities=22% Similarity=0.303 Sum_probs=108.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--------CCCCCCCCcccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--------GAHIGPEPTTDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--------~~~v~~~p~t~r~~i~~~~~~~~ 246 (545)
+.+.|+... ++++++++... +++|+||+|||||||||.|.|.+.| |..++..|- ....+.|.+|+..
T Consensus 9 v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P-~~R~iamVFQ~yA 85 (338)
T COG3839 9 VRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP-EKRGIAMVFQNYA 85 (338)
T ss_pred eEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hHCCEEEEeCCcc
Confidence 344677643 78888888776 9999999999999999999999965 111222121 2345678888888
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
.+|.+|+..+-.+++ ...+ ..+.+......++.+.+.|- | .|..+| |++||++ ++|+++.+|
T Consensus 86 LyPhmtV~~Niaf~L---k~~~---~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVA-------laRAlVr~P 152 (338)
T COG3839 86 LYPHMTVYENIAFGL---KLRG---VPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVA-------LARALVRKP 152 (338)
T ss_pred ccCCCcHHHHhhhhh---hhCC---CchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHH-------HHHHHhcCC
Confidence 888887744433322 1111 11223333444444444443 3 688899 7999999 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEec
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLN 358 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlN 358 (545)
+++|+ .+|+. +....+..++.+.+ .+.+++.|.|
T Consensus 153 ~v~L~DEPlSnLDa~---lR~~mr~ei~~lh~~l~~T~IYVTH 192 (338)
T COG3839 153 KVFLLDEPLSNLDAK---LRVLMRSEIKKLHERLGTTTIYVTH 192 (338)
T ss_pred CEEEecCchhHhhHH---HHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 98887 45553 24555556666644 4678888887
No 177
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.35 E-value=8.2e-12 Score=121.45 Aligned_cols=133 Identities=22% Similarity=0.258 Sum_probs=85.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCc---ccccccchhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGL---TTFGTAFLSK 274 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl---~~~~~~~~~~ 274 (545)
.|+++|+.++|||||+++|+...- .+......++ ..+.....+...|.|+.... .+.|... ...+.
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g--~i~~~~~g~~---~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~----- 71 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAG--IISEKLAGKA---RYMDSREDEQERGITMKSSAISLYFEYEEEDKADGN----- 71 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC--CCccccCCce---eeccCCHHHHHhccccccceEEEEEecCcccccCCC-----
Confidence 489999999999999999997652 2111111111 12233333445565542211 1111100 00000
Q ss_pred hhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEE
Q 009050 275 FECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR 354 (545)
Q Consensus 275 ~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ii 354 (545)
-..++|+||||... |...+...+..+|.+++|+|+.. +...+...+++.....+.|++
T Consensus 72 ----------~~~i~iiDTPG~~~-----------f~~~~~~~l~~aD~~ilVvD~~~-g~~~~t~~~l~~~~~~~~p~i 129 (222)
T cd01885 72 ----------EYLINLIDSPGHVD-----------FSSEVTAALRLCDGALVVVDAVE-GVCVQTETVLRQALKERVKPV 129 (222)
T ss_pred ----------ceEEEEECCCCccc-----------cHHHHHHHHHhcCeeEEEEECCC-CCCHHHHHHHHHHHHcCCCEE
Confidence 03688999999853 33345566899999999999987 567777788887777788999
Q ss_pred EEecCCCCC
Q 009050 355 VVLNKADQV 363 (545)
Q Consensus 355 iVlNK~D~~ 363 (545)
+|+||+|+.
T Consensus 130 lviNKiD~~ 138 (222)
T cd01885 130 LVINKIDRL 138 (222)
T ss_pred EEEECCCcc
Confidence 999999976
No 178
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.35 E-value=9.7e-12 Score=116.78 Aligned_cols=146 Identities=16% Similarity=0.210 Sum_probs=85.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|++|||||||++.+++..++ ....|++...... . ..+.+. .
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~---~~~~~t~~~~~~~--------------~----~~~~~~----~--------- 48 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFV---ESYYPTIENTFSK--------------I----IRYKGQ----D--------- 48 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc---cccCcchhhhEEE--------------E----EEECCE----E---------
Confidence 6899999999999999999987642 2222322111100 0 000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH----hcCCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----RGHDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L----~~~~~~ii 354 (545)
..+.++||||... |..+...+...+|.+++++|.+.....+....+...+ ...+.|++
T Consensus 49 -------~~~~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 110 (180)
T cd04137 49 -------YHLEIVDTAGQDE-----------YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIV 110 (180)
T ss_pred -------EEEEEEECCChHh-----------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 1578999999732 1113345678999999999998632223333433333 23467999
Q ss_pred EEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.....+.. ....+ .+... ...+.+||+++.|+.+
T Consensus 111 lv~NK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gv~~ 153 (180)
T cd04137 111 LVGNKSDLHTQRQVSTEEGKEL----AESWG---AAFLESSARENENVEE 153 (180)
T ss_pred EEEEchhhhhcCccCHHHHHHH----HHHcC---CeEEEEeCCCCCCHHH
Confidence 9999999864221111 01111 11111 2347899999998875
No 179
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.35 E-value=3.5e-12 Score=118.92 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=85.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|+|||||++.+++..++. ...|+. ..... ..+ .+.+. .
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~---~~~~t~-~~~~~-----------~~~------~~~~~-----~-------- 47 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPE---EYVPTV-FDHYA-----------VSV------TVGGK-----Q-------- 47 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---CCCCce-eeeeE-----------EEE------EECCE-----E--------
Confidence 58999999999999999999877521 111111 11100 000 00010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHh--cCCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLR--GHDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~--~~~~~iii 355 (545)
..+.++||||...-.. +...+...+|++++++|..+....+... .++..+. ..+.|+++
T Consensus 48 -------~~~~i~Dt~G~~~~~~-----------~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piiv 109 (174)
T cd04135 48 -------YLLGLYDTAGQEDYDR-----------LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLL 109 (174)
T ss_pred -------EEEEEEeCCCcccccc-----------cccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEE
Confidence 1578999999743111 1223468999999999998732222222 3444443 34689999
Q ss_pred EecCCCCCCHHHHHHHH---------HHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVY---------GALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~---------~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.+........ ........+..+.... +.+||++|.|+++
T Consensus 110 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~e~Sa~~~~gi~~ 164 (174)
T cd04135 110 VGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCY--VECSALTQKGLKT 164 (174)
T ss_pred EeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEE--EEecCCcCCCHHH
Confidence 99999986432211100 0000011222222233 7899999999885
No 180
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.35 E-value=6.8e-12 Score=116.12 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=83.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||++++++..+ ++..+.|...... .... +.+- .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~----~~~~~~t~~~~~~-----------~~~~------~~~~----~--------- 46 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF----IGEYDPNLESLYS-----------RQVT------IDGE----Q--------- 46 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc----ccccCCChHHhce-----------EEEE------ECCE----E---------
Confidence 389999999999999999987553 1221112110000 0000 0000 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh-----cCCCeE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR-----GHDDKI 353 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~-----~~~~~i 353 (545)
..+.++||||...... .....++..+|++++++|.++....+....++..+. ..+.|+
T Consensus 47 -------~~~~i~D~~g~~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi 109 (165)
T cd04146 47 -------VSLEILDTAGQQQADT----------EQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPV 109 (165)
T ss_pred -------EEEEEEECCCCccccc----------chHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 1678999999853100 022345688999999999987433333444444433 236799
Q ss_pred EEEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCC-ccCc
Q 009050 354 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDK-PVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~-~~~~ 403 (545)
++|.||+|+.....+.. ....+ .+..+ .+.+.+||++|. ++++
T Consensus 110 ilv~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 110 ILVGNKADLLHYRQVSTEEGEKL----ASELG---CLFFEVSAAEDYDGVHS 154 (165)
T ss_pred EEEEECCchHHhCccCHHHHHHH----HHHcC---CEEEEeCCCCCchhHHH
Confidence 99999999753221111 01111 11112 233789999984 7664
No 181
>PLN03126 Elongation factor Tu; Provisional
Probab=99.35 E-value=7.5e-12 Score=134.66 Aligned_cols=164 Identities=19% Similarity=0.181 Sum_probs=103.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+++|+.++|||||+++|++... .+.+..... ...+.....+...|.|+.... .+...+
T Consensus 83 ni~iiGhvd~GKSTLi~~Ll~~~~--~i~~~~~~~---~~~~D~~~~Er~rGiTi~~~~~~~~~~~-------------- 143 (478)
T PLN03126 83 NIGTIGHVDHGKTTLTAALTMALA--SMGGSAPKK---YDEIDAAPEERARGITINTATVEYETEN-------------- 143 (478)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhh--hhccccccc---cccccCChhHHhCCeeEEEEEEEEecCC--------------
Confidence 699999999999999999997652 322222211 112233334445677663211 111111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe-EEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVV 356 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~-iiiV 356 (545)
.+++|+||||... |..-+...+..+|++++++|+.. +......+.+..+...+.| ++++
T Consensus 144 --------~~i~liDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~-G~~~qt~e~~~~~~~~gi~~iIvv 203 (478)
T PLN03126 144 --------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSGAD-GPMPQTKEHILLAKQVGVPNMVVF 203 (478)
T ss_pred --------cEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEE
Confidence 3789999999732 21123445678999999999987 6677778888888777887 7789
Q ss_pred ecCCCCCCHHHHHHHHH-HHHHHhccc-ccCCccEEEEeeccCCCcc
Q 009050 357 LNKADQVDTQQLMRVYG-ALMWSLGKV-LNTPEVVRVYIGSFNDKPV 401 (545)
Q Consensus 357 lNK~D~~~~~~l~~v~~-~l~~~l~k~-~~~~~v~~v~iSa~~~~~~ 401 (545)
+||+|+++.++..+... .+...+.+. +....++.+++|+++|.++
T Consensus 204 vNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 204 LNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred EecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 99999987554433222 222222221 1223566789999998654
No 182
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.35 E-value=4e-12 Score=119.34 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=88.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||++.+++..++ ....|+....... .. .+.+- .
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~---~~~~pt~~~~~~~------------~~------~~~~~----~--------- 48 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFP---SEYVPTVFDNYAV------------TV------MIGGE----P--------- 48 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeeeEE------------EE------EECCE----E---------
Confidence 5899999999999999999987652 1222322111000 00 00010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~iii 355 (545)
..+.||||+|...- ..+...+...+|++++++|.++....+... .|+..+.. .+.|+++
T Consensus 49 -------~~l~i~Dt~G~~~~-----------~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piil 110 (175)
T cd01874 49 -------YTLGLFDTAGQEDY-----------DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL 110 (175)
T ss_pred -------EEEEEEECCCccch-----------hhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 26789999998421 112334578999999999998743333343 35555543 3579999
Q ss_pred EecCCCCCCHHHHHHHHHH---------HHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~---------l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.+..++.+.... ....+++.. .....+.+||++|.|+++
T Consensus 111 vgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~--~~~~~~e~SA~tg~~v~~ 165 (175)
T cd01874 111 VGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL--KAVKYVECSALTQKGLKN 165 (175)
T ss_pred EEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh--CCcEEEEecCCCCCCHHH
Confidence 9999998654332211110 000011111 123348899999999885
No 183
>PRK12735 elongation factor Tu; Reviewed
Probab=99.35 E-value=7.2e-12 Score=132.67 Aligned_cols=165 Identities=19% Similarity=0.187 Sum_probs=98.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+++|||||+|+|++... ..+... . +....+.....+...|.|+.... ..+. . +.
T Consensus 14 ~i~iiGhvd~GKSTL~~~L~~~~~---~~g~~~-~-~~~~~~d~~~~E~~rGiT~~~~~-~~~~---~-~~--------- 74 (396)
T PRK12735 14 NVGTIGHVDHGKTTLTAAITKVLA---KKGGGE-A-KAYDQIDNAPEEKARGITINTSH-VEYE---T-AN--------- 74 (396)
T ss_pred EEEEECcCCCCHHHHHHHHHHhhh---hcCCcc-c-chhhhccCChhHHhcCceEEEee-eEEc---C-CC---------
Confidence 799999999999999999998431 111100 0 00001222223446677764321 1110 0 11
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEE-EEe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR-VVL 357 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ii-iVl 357 (545)
.++.|+||||.. . |...+...+..+|++++++|+.. +......+.+..+...+.|.+ +++
T Consensus 75 -------~~i~~iDtPGh~----~-------f~~~~~~~~~~aD~~llVvda~~-g~~~qt~e~l~~~~~~gi~~iivvv 135 (396)
T PRK12735 75 -------RHYAHVDCPGHA----D-------YVKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFL 135 (396)
T ss_pred -------cEEEEEECCCHH----H-------HHHHHHhhhccCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEEE
Confidence 378999999972 1 22234455789999999999986 456667777777777778855 579
Q ss_pred cCCCCCCHHHHHHHH-HHHHHHhcccccC--CccEEEEeeccCCCccC
Q 009050 358 NKADQVDTQQLMRVY-GALMWSLGKVLNT--PEVVRVYIGSFNDKPVN 402 (545)
Q Consensus 358 NK~D~~~~~~l~~v~-~~l~~~l~k~~~~--~~v~~v~iSa~~~~~~~ 402 (545)
||+|+.+.++..+.. ..+...+.. +.+ ..++.+++||.+|.+..
T Consensus 136 NK~Dl~~~~~~~~~~~~ei~~~l~~-~~~~~~~~~ii~~Sa~~g~n~~ 182 (396)
T PRK12735 136 NKCDMVDDEELLELVEMEVRELLSK-YDFPGDDTPIIRGSALKALEGD 182 (396)
T ss_pred EecCCcchHHHHHHHHHHHHHHHHH-cCCCcCceeEEecchhccccCC
Confidence 999998644332222 122111111 122 23556899999997754
No 184
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.35 E-value=8.9e-12 Score=116.10 Aligned_cols=146 Identities=14% Similarity=0.183 Sum_probs=84.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|+|||||++++++..++. ...++.. .... ... ..+.+- .
T Consensus 4 ki~vvG~~~vGKTsli~~~~~~~~~~---~~~~t~~-~~~~----------~~~------~~~~~~----~--------- 50 (170)
T cd04115 4 KIIVIGDSNVGKTCLTYRFCAGRFPE---RTEATIG-VDFR----------ERT------VEIDGE----R--------- 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---cccccee-EEEE----------EEE------EEECCe----E---------
Confidence 69999999999999999999876521 1111111 0000 000 000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ii 354 (545)
..+.++||||... .+ ..+...+..++|++++++|+++.........++..+.. .+.|++
T Consensus 51 -------~~~~i~Dt~G~~~---~~-------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 113 (170)
T cd04115 51 -------IKVQLWDTAGQER---FR-------KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRI 113 (170)
T ss_pred -------EEEEEEeCCChHH---HH-------HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEE
Confidence 2688999999632 11 01344567899999999999874444445556655543 357999
Q ss_pred EEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCcc
Q 009050 355 VVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPV 401 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~ 401 (545)
+|.||+|+....++.. ....+ .+... ...+.+||+++.+.
T Consensus 114 iv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~e~Sa~~~~~~ 154 (170)
T cd04115 114 LVGNKCDLREQIQVPTDLAQRF----ADAHS---MPLFETSAKDPSEN 154 (170)
T ss_pred EEEECccchhhcCCCHHHHHHH----HHHcC---CcEEEEeccCCcCC
Confidence 9999999864332211 11111 11111 22378999995433
No 185
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.35 E-value=1.2e-11 Score=115.07 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=62.1
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC--CCeEEEEecCCCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH--DDKIRVVLNKADQVD 364 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~--~~~iiiVlNK~D~~~ 364 (545)
.+.++||||...- ..+...+...+|++|+++|.++.........++..+... +.|+++|.||+|+..
T Consensus 50 ~l~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~ 118 (166)
T cd00877 50 RFNVWDTAGQEKF-----------GGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD 118 (166)
T ss_pred EEEEEECCCChhh-----------ccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc
Confidence 6789999997321 112334578999999999998743333444566665432 589999999999873
Q ss_pred HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 365 TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 365 ~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.....+.. .+ .+. .....+.+||++|.|+++
T Consensus 119 ~~~~~~~~-~~----~~~---~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 119 RKVKAKQI-TF----HRK---KNLQYYEISAKSNYNFEK 149 (166)
T ss_pred ccCCHHHH-HH----HHH---cCCEEEEEeCCCCCChHH
Confidence 22111111 11 111 122348999999999885
No 186
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.35 E-value=1.1e-11 Score=137.41 Aligned_cols=154 Identities=17% Similarity=0.207 Sum_probs=97.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
+|+++|..++|||||+|+|+|.+. .... ++..+|+|...... .+...+.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~--dr~~----------------eE~~rGiTI~l~~~----~~~~~~g--------- 50 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNA--DRLP----------------EEKKRGMTIDLGYA----YWPQPDG--------- 50 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--ccch----------------hcccCCceEEeeeE----EEecCCC---------
Confidence 689999999999999999998652 1110 01123444422100 0000000
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe-EEEEe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVVL 357 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~-iiiVl 357 (545)
..++|+||||.. + |...+...+..+|++++|+|+.. +......+.+..+...+.+ +++|+
T Consensus 51 -------~~i~~IDtPGhe---~--------fi~~m~~g~~~~D~~lLVVda~e-g~~~qT~ehl~il~~lgi~~iIVVl 111 (614)
T PRK10512 51 -------RVLGFIDVPGHE---K--------FLSNMLAGVGGIDHALLVVACDD-GVMAQTREHLAILQLTGNPMLTVAL 111 (614)
T ss_pred -------cEEEEEECCCHH---H--------HHHHHHHHhhcCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 257899999972 1 21233445789999999999987 5667777777777666666 57999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+++.+.+..+...+...+... .....+.+++||++|.|+++
T Consensus 112 NKiDlv~~~~~~~v~~ei~~~l~~~-~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 112 TKADRVDEARIAEVRRQVKAVLREY-GFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred ECCccCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEeCCCCCCCHH
Confidence 9999987655555444442222221 22233448999999999875
No 187
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.34 E-value=7.6e-12 Score=116.76 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=85.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||++++++..++. ...|+.. .... .. ..+.+- .
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~---~~~~t~~-~~~~-----------~~------~~~~~~----~-------- 48 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE---VYVPTVF-ENYV-----------AD------IEVDGK----Q-------- 48 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCccc-cceE-----------EE------EEECCE----E--------
Confidence 368999999999999999999877521 1112111 1100 00 000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~ii 354 (545)
..+.++||||...- .. +....+.++|++++++|.+.....+... .++..+.. .+.|++
T Consensus 49 --------~~l~i~Dt~G~~~~--~~---------~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~pii 109 (175)
T cd01870 49 --------VELALWDTAGQEDY--DR---------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII 109 (175)
T ss_pred --------EEEEEEeCCCchhh--hh---------ccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE
Confidence 16789999997321 11 1123468999999999987632122222 24444443 367999
Q ss_pred EEecCCCCCCHHHHHHHHHH-----HHHH----hcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGA-----LMWS----LGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~-----l~~~----l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.......+.... ..+. ..+..... ..+++||++|.|+++
T Consensus 110 lv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~ 165 (175)
T cd01870 110 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF--GYMECSAKTKEGVRE 165 (175)
T ss_pred EEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCc--EEEEeccccCcCHHH
Confidence 99999998753322111110 0001 11111222 338999999999885
No 188
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.34 E-value=7.4e-12 Score=138.14 Aligned_cols=166 Identities=23% Similarity=0.271 Sum_probs=106.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+|+|+.++|||||+++|+...- .. ......+. .++.....+...|.|+... ..+.+.+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg--~~-~~~~~v~~--~~~D~~~~ErerGiTI~~~~~~v~~~~-------------- 63 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSG--TF-RANEAVAE--RVMDSNDLERERGITILAKNTAIRYNG-------------- 63 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC--CC-ccccccee--ecccCchHHHhCCccEEeeeEEEEECC--------------
Confidence 489999999999999999996531 11 11111111 2445555556677777432 2233332
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..++|+||||..+ |...+...+..+|.+++++|+.. +...+...++..+...+.|+++|+
T Consensus 64 --------~kinlIDTPGh~D-----------F~~ev~~~l~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~~ip~IVvi 123 (594)
T TIGR01394 64 --------TKINIVDTPGHAD-----------FGGEVERVLGMVDGVLLLVDASE-GPMPQTRFVLKKALELGLKPIVVI 123 (594)
T ss_pred --------EEEEEEECCCHHH-----------HHHHHHHHHHhCCEEEEEEeCCC-CCcHHHHHHHHHHHHCCCCEEEEE
Confidence 2789999999843 32344566789999999999987 566777888888888889999999
Q ss_pred cCCCCCCH--HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDT--QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~--~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+.+. .++..-...++..++..-....++.+++||+.|.+...
T Consensus 124 NKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~ 171 (594)
T TIGR01394 124 NKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLD 171 (594)
T ss_pred ECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCccccc
Confidence 99998642 22222222222222211111124458999999976543
No 189
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.34 E-value=6.9e-12 Score=113.34 Aligned_cols=153 Identities=21% Similarity=0.233 Sum_probs=80.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|.|++.. .+.+..++++....... ..+.+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~---~~~~~~~~~~~~~~~~~-----------------~~~~~~------------- 48 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK---FITEYKPGTTRNYVTTV-----------------IEEDGK------------- 48 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC---CcCcCCCCceeeeeEEE-----------------EEECCE-------------
Confidence 369999999999999999999987 34444444444332200 000010
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
-..+.++||||...-.. .... +...+..++...|+++++.|... ........+......+.|+++|+
T Consensus 49 -------~~~~~~~D~~G~~~~~~--~~~~--~~~~~~~~i~~~d~~~~v~~~~~--~~~~~~~~~~~~~~~~~p~ivv~ 115 (161)
T TIGR00231 49 -------TYKFNLLDTAGQEDYRA--IRRL--YYRAVESSLRVFDIVILVLDVEE--ILEKQTKEIIHHAESNVPIILVG 115 (161)
T ss_pred -------EEEEEEEECCCcccchH--HHHH--HHhhhhEEEEEEEEeeeehhhhh--HhHHHHHHHHHhcccCCcEEEEE
Confidence 01678999999643111 0000 00011222334444444444432 11122222222223378999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+.... .......... ...... .+++||..+.|+.+
T Consensus 116 nK~D~~~~~-~~~~~~~~~~----~~~~~~--~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 116 NKIDLRDAK-LKTHVAFLFA----KLNGEP--IIPLSAETGKNIDS 154 (161)
T ss_pred EcccCCcch-hhHHHHHHHh----hccCCc--eEEeecCCCCCHHH
Confidence 999998643 2222222211 112222 48999999998875
No 190
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.34 E-value=1.2e-11 Score=114.93 Aligned_cols=147 Identities=19% Similarity=0.233 Sum_probs=86.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||++++++..+. ....|++...... +. .+.+. .
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~---~~~~~t~~~~~~~------------~~------~~~~~----~--------- 48 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFI---ESYDPTIEDSYRK------------QV------EIDGR----Q--------- 48 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC---cccCCcchheEEE------------EE------EECCE----E---------
Confidence 5899999999999999999977641 1122222111000 00 00010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~ii 354 (545)
..+.++||||... |..+.+.++..++.+++++|.++....+....+...+. ..+.|++
T Consensus 49 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii 110 (168)
T cd04177 49 -------CDLEILDTAGTEQ-----------FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV 110 (168)
T ss_pred -------EEEEEEeCCCccc-----------chhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEE
Confidence 1678999999742 22244556788999999999886332333334444332 3467999
Q ss_pred EEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.....+.. ....+ .+.. ..++.+.+||+++.++++
T Consensus 111 iv~nK~D~~~~~~~~~~~~~~~----~~~~--~~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 111 LVGNKADLEDDRQVSREDGVSL----SQQW--GNVPFYETSARKRTNVDE 154 (168)
T ss_pred EEEEChhccccCccCHHHHHHH----HHHc--CCceEEEeeCCCCCCHHH
Confidence 9999999865322111 11111 1111 223458999999999774
No 191
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.34 E-value=3.3e-12 Score=119.40 Aligned_cols=151 Identities=20% Similarity=0.201 Sum_probs=86.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.++++|++|+|||||++.+++..++ +..+.|...... ..+ .+.+. .
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~----~~~~~t~~~~~~-----------~~~------~~~~~----~--------- 47 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP----TEYVPTAFDNFS-----------VVV------LVDGK----P--------- 47 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC----CCCCCceeeeee-----------EEE------EECCE----E---------
Confidence 5899999999999999999886642 111112111100 000 00010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHH-HHHHHHHhc--CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRG--HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~-~~~l~~L~~--~~~~iii 355 (545)
..+.+|||||...- ..+...++..+|++++++|.++....+.. ..++..+.. .+.|+++
T Consensus 48 -------~~~~i~Dt~G~~~~-----------~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piil 109 (173)
T cd04130 48 -------VRLQLCDTAGQDEF-----------DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIIL 109 (173)
T ss_pred -------EEEEEEECCCChhh-----------ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEE
Confidence 26789999998321 11223356899999999999873322222 245655544 3579999
Q ss_pred EecCCCCCCHHHHHH---------HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMR---------VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~---------v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+........ +.......+.+..+...+ +.+||++|.|+++
T Consensus 110 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~--~e~Sa~~~~~v~~ 164 (173)
T cd04130 110 VGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEY--IECSALTQKNLKE 164 (173)
T ss_pred EeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeE--EEEeCCCCCCHHH
Confidence 999999864321110 000000111222222233 7899999999885
No 192
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.33 E-value=5.6e-12 Score=126.23 Aligned_cols=129 Identities=20% Similarity=0.222 Sum_probs=80.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc----ceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD----RFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLS 273 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~----r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~ 273 (545)
.|+|+|++|+|||||+++|+...- .+. ...... ....++.....+...|.++... ..+.+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g--~i~-~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~---------- 70 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGG--AIR-EAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD---------- 70 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC--Ccc-cCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC----------
Confidence 589999999999999999986542 211 110000 0111112222223344443211 1222222
Q ss_pred hhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeE
Q 009050 274 KFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKI 353 (545)
Q Consensus 274 ~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~i 353 (545)
..++++||||... |...+...+..+|.+++++|++. +.......+++.+...+.|+
T Consensus 71 ------------~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~IlVvda~~-g~~~~~~~i~~~~~~~~~P~ 126 (267)
T cd04169 71 ------------CVINLLDTPGHED-----------FSEDTYRTLTAVDSAVMVIDAAK-GVEPQTRKLFEVCRLRGIPI 126 (267)
T ss_pred ------------EEEEEEECCCchH-----------HHHHHHHHHHHCCEEEEEEECCC-CccHHHHHHHHHHHhcCCCE
Confidence 3789999999842 11223455789999999999986 45556667777776778999
Q ss_pred EEEecCCCCCC
Q 009050 354 RVVLNKADQVD 364 (545)
Q Consensus 354 iiVlNK~D~~~ 364 (545)
++++||+|...
T Consensus 127 iivvNK~D~~~ 137 (267)
T cd04169 127 ITFINKLDREG 137 (267)
T ss_pred EEEEECCccCC
Confidence 99999999864
No 193
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.33 E-value=1.6e-11 Score=115.22 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=86.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+.++++..+++ ...|+.. .... .... +.+- .
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f~~---~~~~t~~-~~~~-----------~~~~------~~~~----~--------- 48 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAFPG---EYIPTVF-DNYS-----------ANVM------VDGK----P--------- 48 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---cCCCcce-eeeE-----------EEEE------ECCE----E---------
Confidence 58999999999999999999866521 1122211 1000 0000 0010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~iii 355 (545)
-.+.|+||||... |..+...++.++|++|+++|.++.....+.. .++..+.. .+.|+++
T Consensus 49 -------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piil 110 (174)
T cd01871 49 -------VNLGLWDTAGQED-----------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 110 (174)
T ss_pred -------EEEEEEECCCchh-----------hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 1678999999732 1113344578999999999998743333332 34444432 3579999
Q ss_pred EecCCCCCCHH-HHHHHHHH--------HHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQ-QLMRVYGA--------LMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~-~l~~v~~~--------l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.+.. ...+.... ....+.+..+. ...+.+||++|.|+++
T Consensus 111 vgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~ 165 (174)
T cd01871 111 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQKGLKT 165 (174)
T ss_pred EeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC--cEEEEecccccCCHHH
Confidence 99999986422 11111100 00011111221 2337899999999875
No 194
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.33 E-value=2.3e-12 Score=126.77 Aligned_cols=164 Identities=25% Similarity=0.299 Sum_probs=114.9
Q ss_pred EEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCC-------CcccceEEEEeCCCcc
Q 009050 179 YRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPE-------PTTDRFVVVMSGVDDR 246 (545)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~-------p~t~r~~i~~~~~~~~ 246 (545)
+.|+.+. +++++++++.. .++++||+|||||||++.|.|.+.| |.++ +.+ -.+....|.+.+|+..
T Consensus 10 ~~~~~~~--a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA 87 (345)
T COG1118 10 KRFGAFG--ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA 87 (345)
T ss_pred hhccccc--ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechh
Confidence 3566654 67777777665 9999999999999999999999976 2221 111 1223345777888888
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
..+.+|+.-+..+ |+.... .-.++-....+.+++|..+.+-+ .|-.+| |++||++ +||+.+-+|
T Consensus 88 LF~HmtVa~NIAF---Gl~~~~-~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVA-------LARALA~eP 156 (345)
T COG1118 88 LFPHMTVADNIAF---GLKVRK-ERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVA-------LARALAVEP 156 (345)
T ss_pred hcccchHHhhhhh---cccccc-cCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHH-------HHHHhhcCC
Confidence 8887777433322 332110 00112244456677787787776 688888 7999999 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEec
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLN 358 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlN 358 (545)
+++|+ .+|+. ...++..++..+... +.++++|.+
T Consensus 157 ~vLLLDEPf~ALDa~---vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 157 KVLLLDEPFGALDAK---VRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred CeEeecCCchhhhHH---HHHHHHHHHHHHHHhhCceEEEEeC
Confidence 99998 67765 467888888888665 888898888
No 195
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.33 E-value=1.1e-11 Score=113.32 Aligned_cols=146 Identities=20% Similarity=0.253 Sum_probs=85.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|++++..+. ....|++...... . ..+.+. .
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~---~~~~~~~~~~~~~------------~------~~~~~~----~--------- 46 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV---EEYDPTIEDSYRK------------T------IVVDGE----T--------- 46 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC---cCcCCChhHeEEE------------E------EEECCE----E---------
Confidence 4899999999999999999987642 1222222211100 0 000000 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---c-CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---G-HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~-~~~~ii 354 (545)
..+.++|+||... +......++..+|++++++|..+.....+...+...+. . .+.|++
T Consensus 47 -------~~~~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 108 (160)
T cd00876 47 -------YTLDILDTAGQEE-----------FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIV 108 (160)
T ss_pred -------EEEEEEECCChHH-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 2678999999743 11133456789999999999986333333444444332 2 468999
Q ss_pred EEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|....... .+....+. +... .+.+.+||.++.|+++
T Consensus 109 vv~nK~D~~~~~~~~~~~~~~~~----~~~~---~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 109 LVGNKCDLENERQVSKEEGKALA----KEWG---CPFIETSAKDNINIDE 151 (160)
T ss_pred EEEECCcccccceecHHHHHHHH----HHcC---CcEEEeccCCCCCHHH
Confidence 99999998752211 11111111 1111 2337999999998775
No 196
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.33 E-value=2.6e-11 Score=114.65 Aligned_cols=149 Identities=16% Similarity=0.198 Sum_probs=87.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|..|+|||||++++++..++. ...|+....... .++ ...+. .
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~---~~~~T~g~~~~~-----------~~i------~~~~~----~--------- 48 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDE---DYIQTLGVNFME-----------KTI------SIRGT----E--------- 48 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---CCCCccceEEEE-----------EEE------EECCE----E---------
Confidence 58999999999999999999877521 122222111000 000 00010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~iii 355 (545)
..+.+|||+|... |..+...++.++|++++++|.++....+...+++..+.. ...| ++
T Consensus 49 -------~~l~iwDt~G~~~-----------~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-il 109 (182)
T cd04128 49 -------ITFSIWDLGGQRE-----------FINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-IL 109 (182)
T ss_pred -------EEEEEEeCCCchh-----------HHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EE
Confidence 2688999999732 112344567999999999999874444455566666644 2345 67
Q ss_pred EecCCCCCC---HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVD---TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~---~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.. .++...+. .....+++..+ ...+++||++|.|+++
T Consensus 110 VgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~---~~~~e~SAk~g~~v~~ 156 (182)
T cd04128 110 VGTKYDLFADLPPEEQEEIT-KQARKYAKAMK---APLIFCSTSHSINVQK 156 (182)
T ss_pred EEEchhccccccchhhhhhH-HHHHHHHHHcC---CEEEEEeCCCCCCHHH
Confidence 899999862 11111111 11111222222 2337999999999885
No 197
>PRK00049 elongation factor Tu; Reviewed
Probab=99.33 E-value=1.1e-11 Score=131.17 Aligned_cols=164 Identities=20% Similarity=0.180 Sum_probs=100.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|+.++|||||+++|++... ..+.. . .+....+.....+..+|+|+.... ..|. . +.
T Consensus 14 ni~iiGhvd~GKSTL~~~L~~~~~---~~g~~-~-~~~~~~~d~~~~E~~rg~Ti~~~~-~~~~---~-~~--------- 74 (396)
T PRK00049 14 NVGTIGHVDHGKTTLTAAITKVLA---KKGGA-E-AKAYDQIDKAPEEKARGITINTAH-VEYE---T-EK--------- 74 (396)
T ss_pred EEEEEeECCCCHHHHHHHHHHhhh---hccCC-c-ccchhhccCChHHHhcCeEEeeeE-EEEc---C-CC---------
Confidence 799999999999999999998531 11110 0 001112233334456777774321 1110 0 11
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEE-EEe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR-VVL 357 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ii-iVl 357 (545)
.++.|+||||... |...+...+..+|++++++|+.. +......+++..+...+.|.+ +++
T Consensus 75 -------~~i~~iDtPG~~~-----------f~~~~~~~~~~aD~~llVVDa~~-g~~~qt~~~~~~~~~~g~p~iiVvv 135 (396)
T PRK00049 75 -------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFL 135 (396)
T ss_pred -------eEEEEEECCCHHH-----------HHHHHHhhhccCCEEEEEEECCC-CCchHHHHHHHHHHHcCCCEEEEEE
Confidence 3789999999731 22234455789999999999986 567777788888887888876 689
Q ss_pred cCCCCCCHHHHHH-HHHHHHHHhccc-ccCCccEEEEeeccCCCc
Q 009050 358 NKADQVDTQQLMR-VYGALMWSLGKV-LNTPEVVRVYIGSFNDKP 400 (545)
Q Consensus 358 NK~D~~~~~~l~~-v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~ 400 (545)
||+|+++.++..+ +...+...+... .....++.+++||+++.+
T Consensus 136 NK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 136 NKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred eecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence 9999986443322 222222122221 111345568999999855
No 198
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.33 E-value=2.3e-11 Score=133.97 Aligned_cols=152 Identities=19% Similarity=0.320 Sum_probs=94.0
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
.|.|+++|.+|+|||||+++|.+..+ . .+..+++|...-. . .+.+.+ +
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v--~-~~e~~GIT~~ig~------------~-----~v~~~~----~-------- 134 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKV--A-QGEAGGITQHIGA------------Y-----HVENED----G-------- 134 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCc--c-cccCCceeecceE------------E-----EEEECC----C--------
Confidence 45999999999999999999998764 1 1221221111100 0 000000 0
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiV 356 (545)
..++|+||||... |..+....+..+|++++++|+.. +...+..+.+..++..+.|++++
T Consensus 135 ---------~~i~~iDTPGhe~-----------F~~~r~rga~~aDiaILVVda~d-gv~~qT~e~i~~~~~~~vPiIVv 193 (587)
T TIGR00487 135 ---------KMITFLDTPGHEA-----------FTSMRARGAKVTDIVVLVVAADD-GVMPQTIEAISHAKAANVPIIVA 193 (587)
T ss_pred ---------cEEEEEECCCCcc-----------hhhHHHhhhccCCEEEEEEECCC-CCCHhHHHHHHHHHHcCCCEEEE
Confidence 2689999999743 11122234688999999999986 45666677777777778999999
Q ss_pred ecCCCCCC--HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 357 LNKADQVD--TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~--~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+||+|+.+ .+.+.......-. ..... ..+++.+++||++|.|+++
T Consensus 194 iNKiDl~~~~~e~v~~~L~~~g~-~~~~~-~~~~~~v~iSAktGeGI~e 240 (587)
T TIGR00487 194 INKIDKPEANPDRVKQELSEYGL-VPEDW-GGDTIFVPVSALTGDGIDE 240 (587)
T ss_pred EECcccccCCHHHHHHHHHHhhh-hHHhc-CCCceEEEEECCCCCChHH
Confidence 99999864 2332222111100 00001 1123458999999999886
No 199
>PRK10218 GTP-binding protein; Provisional
Probab=99.32 E-value=2.4e-11 Score=134.00 Aligned_cols=165 Identities=22% Similarity=0.235 Sum_probs=104.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+|+|..++|||||+++|++..- ...... . ... .++.....+...|.|+... ..+.+.+
T Consensus 7 nIaIiGh~d~GKTTLv~~Ll~~~g--~~~~~~-~-~~~-~v~D~~~~E~erGiTi~~~~~~i~~~~-------------- 67 (607)
T PRK10218 7 NIAIIAHVDHGKTTLVDKLLQQSG--TFDSRA-E-TQE-RVMDSNDLEKERGITILAKNTAIKWND-------------- 67 (607)
T ss_pred EEEEECCCCCcHHHHHHHHHHhcC--Cccccc-c-cce-eeeccccccccCceEEEEEEEEEecCC--------------
Confidence 699999999999999999997541 221111 1 111 3444444555667766322 2222322
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..++++||||... |...+..++..+|.+|+++|+.. +...+...++..+...+.|+++++
T Consensus 68 --------~~inliDTPG~~d-----------f~~~v~~~l~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~~gip~IVvi 127 (607)
T PRK10218 68 --------YRINIVDTPGHAD-----------FGGEVERVMSMVDSVLLVVDAFD-GPMPQTRFVTKKAFAYGLKPIVVI 127 (607)
T ss_pred --------EEEEEEECCCcch-----------hHHHHHHHHHhCCEEEEEEeccc-CccHHHHHHHHHHHHcCCCEEEEE
Confidence 2789999999843 22245566899999999999986 556667777777777889999999
Q ss_pred cCCCCCCH--HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccC
Q 009050 358 NKADQVDT--QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVN 402 (545)
Q Consensus 358 NK~D~~~~--~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~ 402 (545)
||+|.... .+...-...++-.++......+++.+++||++|.+..
T Consensus 128 NKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~ 174 (607)
T PRK10218 128 NKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGL 174 (607)
T ss_pred ECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccC
Confidence 99998642 2222212222211111111123556899999998543
No 200
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.32 E-value=1.5e-11 Score=115.89 Aligned_cols=114 Identities=20% Similarity=0.298 Sum_probs=72.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|+|||||++++++..+++ ...|+....... .+ .+.+ .
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~---~~~~t~~~~~~~------------~~------~~~~-----~--------- 47 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPE---TYVPTVFENYTA------------SF------EIDE-----Q--------- 47 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCC---CcCCceEEEEEE------------EE------EECC-----E---------
Confidence 58999999999999999999877532 112221100000 00 0001 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHH-HHHHHHHhc--CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRG--HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~-~~~l~~L~~--~~~~iii 355 (545)
.-.+.+|||+|... |..+...+...+|++|+++|.++....+.. ..|+..+++ .+.|+++
T Consensus 48 ------~~~l~iwDt~G~~~-----------~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iil 110 (178)
T cd04131 48 ------RIELSLWDTSGSPY-----------YDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLL 110 (178)
T ss_pred ------EEEEEEEECCCchh-----------hhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEE
Confidence 02688999999732 111233457899999999999875444443 456665544 3579999
Q ss_pred EecCCCCCC
Q 009050 356 VLNKADQVD 364 (545)
Q Consensus 356 VlNK~D~~~ 364 (545)
|.||+|+.+
T Consensus 111 VgnK~DL~~ 119 (178)
T cd04131 111 VGCKTDLRT 119 (178)
T ss_pred EEEChhhhc
Confidence 999999853
No 201
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.32 E-value=1.9e-11 Score=115.51 Aligned_cols=152 Identities=17% Similarity=0.229 Sum_probs=88.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|+|||||++++++..++. ...|+.. .... ..+. +.+- .
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~---~~~pT~~-~~~~-----------~~~~------~~~~----~-------- 52 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPE---NYVPTVF-ENYT-----------ASFE------IDTQ----R-------- 52 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCC---ccCCcee-eeeE-----------EEEE------ECCE----E--------
Confidence 379999999999999999999877521 1122211 0000 0000 0010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHH-HHHHHHHhc--CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRG--HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~-~~~l~~L~~--~~~~ii 354 (545)
-.+.||||+|... |..+...+..++|++|+++|.++....+.. ..|+..++. .+.|++
T Consensus 53 --------~~l~iwDtaG~e~-----------~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~pii 113 (182)
T cd04172 53 --------IELSLWDTSGSPY-----------YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML 113 (182)
T ss_pred --------EEEEEEECCCchh-----------hHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE
Confidence 1688999999721 122344567899999999999874434443 456655544 257999
Q ss_pred EEecCCCCCCH-HHHHH--------HHHHHHHHhcccccCCccEEEEeeccCCCc-cCc
Q 009050 355 VVLNKADQVDT-QQLMR--------VYGALMWSLGKVLNTPEVVRVYIGSFNDKP-VNE 403 (545)
Q Consensus 355 iVlNK~D~~~~-~~l~~--------v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~-~~~ 403 (545)
+|.||+|+.+. ..+.+ +.......+++..+. ...+.+||++|.+ +++
T Consensus 114 lVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~--~~~~E~SAk~~~n~v~~ 170 (182)
T cd04172 114 LVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA--ATYIECSALQSENSVRD 170 (182)
T ss_pred EEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC--CEEEECCcCCCCCCHHH
Confidence 99999998531 11000 000001111222221 2337899999998 875
No 202
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.32 E-value=1.8e-12 Score=132.53 Aligned_cols=164 Identities=24% Similarity=0.340 Sum_probs=112.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--------CCCCCCCCcccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--------GAHIGPEPTTDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--------~~~v~~~p~t~r~~i~~~~~~~~ 246 (545)
+++.|+++. ++++++++..+ +++|+||+||||||++++|.|.+.| |..++..|- .+..+.|.+|+.+
T Consensus 11 v~k~yg~~~--av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp-~kR~ig~VFQ~YA 87 (352)
T COG3842 11 VSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP-EKRPIGMVFQSYA 87 (352)
T ss_pred eeeecCCee--EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hhcccceeecCcc
Confidence 445788654 99999999887 9999999999999999999999976 112222222 2345667788888
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
..|..|+..+..+++. ..+. ..+.+...+..++|+.+.+-+ .|..+| |++||++ +||+++.+|
T Consensus 88 LFPHltV~~NVafGLk---~~~~--~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVA-------LARAL~~~P 155 (352)
T COG3842 88 LFPHMTVEENVAFGLK---VRKK--LKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVA-------LARALVPEP 155 (352)
T ss_pred cCCCCcHHHHhhhhhh---hcCC--CCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHH-------HHHHhhcCc
Confidence 8887777544433322 1000 011123445667777777766 677777 7999999 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHH-hcCCCeEEEEec
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSL-RGHDDKIRVVLN 358 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L-~~~~~~iiiVlN 358 (545)
+++|+ .+|.. +..++..-++.+ ++.+.++++|.|
T Consensus 156 ~vLLLDEPlSaLD~k---LR~~mr~Elk~lq~~~giT~i~VTH 195 (352)
T COG3842 156 KVLLLDEPLSALDAK---LREQMRKELKELQRELGITFVYVTH 195 (352)
T ss_pred chhhhcCcccchhHH---HHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 99998 45543 344554444444 456889999988
No 203
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.32 E-value=6.6e-12 Score=120.08 Aligned_cols=125 Identities=16% Similarity=0.282 Sum_probs=78.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCC-CCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP-EPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~-~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+|+|++|||||||+|.|+|... ..++. .+.+|+..... ...+.|
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~--~~~~~~~~~~T~~~~~~-----------------~~~~~~-------------- 48 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREV--FESKLSASSVTKTCQKE-----------------SAVWDG-------------- 48 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCc--cccccCCCCccccccee-----------------eEEECC--------------
Confidence 589999999999999999999985 43332 11122211100 000111
Q ss_pred hcCchhhccCceeecCCCCCChh--hhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC-C----
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGE--KQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH-D---- 350 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sge--kq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~-~---- 350 (545)
.++.++||||+.+.. ...+...+ ...+......+|++|+++|+.+ ++.++..+++.+++. +
T Consensus 49 --------~~i~viDTPG~~d~~~~~~~~~~~i--~~~~~~~~~g~~~illVi~~~~--~t~~d~~~l~~l~~~fg~~~~ 116 (196)
T cd01852 49 --------RRVNVIDTPGLFDTSVSPEQLSKEI--VRCLSLSAPGPHAFLLVVPLGR--FTEEEEQAVETLQELFGEKVL 116 (196)
T ss_pred --------eEEEEEECcCCCCccCChHHHHHHH--HHHHHhcCCCCEEEEEEEECCC--cCHHHHHHHHHHHHHhChHhH
Confidence 378999999998731 11122111 0011222478999999999886 567777788777552 2
Q ss_pred CeEEEEecCCCCCCHHHH
Q 009050 351 DKIRVVLNKADQVDTQQL 368 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~~~l 368 (545)
.++++|++++|.+....+
T Consensus 117 ~~~ivv~T~~d~l~~~~~ 134 (196)
T cd01852 117 DHTIVLFTRGDDLEGGTL 134 (196)
T ss_pred hcEEEEEECccccCCCcH
Confidence 478899999998764433
No 204
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.31 E-value=2.9e-11 Score=114.95 Aligned_cols=147 Identities=17% Similarity=0.143 Sum_probs=91.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCC-CcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPE-PTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~-p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+++|..|||||||++.+.+..+. .+. |+.+..... .++. +.+. .
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~----~~~~~t~~~~~~~-----------~~i~------~~~~----~------- 54 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTE----SPYGYNMGIDYKT-----------TTIL------LDGR----R------- 54 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC----CCCCCcceeEEEE-----------EEEE------ECCE----E-------
Confidence 47999999999999999999976541 111 111110000 0000 0110 0
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc--CCCeEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIR 354 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~--~~~~ii 354 (545)
..+.++||||... |..+...+...+|.+|+++|.++....+....|+..+.. .+.|++
T Consensus 55 ---------~~l~iwDt~G~~~-----------~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~pii 114 (189)
T cd04121 55 ---------VKLQLWDTSGQGR-----------FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKI 114 (189)
T ss_pred ---------EEEEEEeCCCcHH-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 2688999999832 222445667999999999999985555666677777754 367999
Q ss_pred EEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.....+. +....+ .+..+ ...+.+||++|.|+++
T Consensus 115 lVGNK~DL~~~~~v~~~~~~~~----a~~~~---~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 115 LVGNRLHLAFKRQVATEQAQAY----AERNG---MTFFEVSPLCNFNITE 157 (189)
T ss_pred EEEECccchhccCCCHHHHHHH----HHHcC---CEEEEecCCCCCCHHH
Confidence 999999986421111 111111 12112 2237899999999885
No 205
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.31 E-value=9.3e-12 Score=121.94 Aligned_cols=162 Identities=15% Similarity=0.206 Sum_probs=89.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCC---CCccc-------
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPF---SGLTT------- 266 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~---~gl~~------- 266 (545)
.|.++++|++||||||++|+|+|..+ .+.+....|.+.+.+.......... .........+ ..+..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~~--~~~~~g~~t~~p~~i~l~~~~~~~~--~~~~~~~~~~~~~~~v~~~i~~~~~ 101 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRDF--LPRGSGIVTRRPLILQLINSSTEYA--EFLHCKGKKFTDFDEVRNEIEAETD 101 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCCc--cccCCCcccccceEEEccCCCCcce--EEEecCCcccCCHHHHHHHHHHHHH
Confidence 36899999999999999999999874 3333333333332221111111000 0000000000 00000
Q ss_pred ----ccccchhhhhhhcCchhhccCceeecCCCCCCh----hhhhhhhccChHHHHHHHhcC-CCEEEEEeCCCCCCccH
Q 009050 267 ----FGTAFLSKFECSQMPHSLLEHITLVDTPGVLSG----EKQRTQRAYDFTGVTSWFAAK-CDLILLLFDPHKLDISD 337 (545)
Q Consensus 267 ----~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sg----ekq~v~~~~~~~~ia~~~~~~-aDliLlvlD~~~~~~~~ 337 (545)
.+..|-......+...+-.-.++|+||||+... +.+..... ...++..++++ .++||+++|+.. ++..
T Consensus 102 ~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~--i~~lv~~yi~~~~~IIL~Vvda~~-d~~~ 178 (240)
T smart00053 102 RVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQ--IKDMIKQFISKEECLILAVTPANV-DLAN 178 (240)
T ss_pred HhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHH--HHHHHHHHHhCccCeEEEEEECCC-CCCc
Confidence 000000000011122233458999999999742 11111111 22356777874 469999999875 5554
Q ss_pred HH-HHHHHHHhcCCCeEEEEecCCCCCCH
Q 009050 338 EF-KRVITSLRGHDDKIRVVLNKADQVDT 365 (545)
Q Consensus 338 ~~-~~~l~~L~~~~~~iiiVlNK~D~~~~ 365 (545)
.. .++.+.+...+.++++|+||+|..+.
T Consensus 179 ~d~l~ia~~ld~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 179 SDALKLAKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred hhHHHHHHHHHHcCCcEEEEEECCCCCCc
Confidence 44 68888888889999999999999864
No 206
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.4e-12 Score=128.29 Aligned_cols=93 Identities=30% Similarity=0.493 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 009050 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQ 88 (545)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~g~~ 88 (545)
|.++ .++..|+++|-.+.+- +|+|+|..|..-+-+|.||+++|++||.|+|.|+||+|+-+||+.|-|||.....|++
T Consensus 437 wvv~-~dk~~yde~fy~l~p~-~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~~kleghe 514 (532)
T KOG1954|consen 437 WVVS-KDKPTYDEIFYTLSPV-NGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKLKLEGHE 514 (532)
T ss_pred eeee-cCCcchHhhhhccccc-CceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHheeccccc
Confidence 5554 5789999999999885 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCCCCCccc
Q 009050 89 VTHDLWNSDVDFQNLKPPAME 109 (545)
Q Consensus 89 ~~~~l~~~~~~~~~l~~p~~~ 109 (545)
+|.+|++ .+.||+-.
T Consensus 515 lp~~lp~------hl~pps~r 529 (532)
T KOG1954|consen 515 LPSELPK------HLVPPSKR 529 (532)
T ss_pred CccccCc------ccCCcccc
Confidence 9999887 67777654
No 207
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.30 E-value=1.4e-11 Score=130.38 Aligned_cols=164 Identities=18% Similarity=0.168 Sum_probs=97.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|+.++|||||+++|++.. ...+... .+....+.....+..+|.|+.... ..+.. ++
T Consensus 14 ~i~i~Ghvd~GKStL~~~L~~~~---~~~g~~~--~~~~~~~d~~~~E~~rG~Ti~~~~-~~~~~----~~--------- 74 (394)
T TIGR00485 14 NIGTIGHVDHGKTTLTAAITTVL---AKEGGAA--ARAYDQIDNAPEEKARGITINTAH-VEYET----EN--------- 74 (394)
T ss_pred EEEEEeecCCCHHHHHHHHHhhH---HHhhccc--ccccccccCCHHHHhcCcceeeEE-EEEcC----CC---------
Confidence 79999999999999999998653 1111100 000111222233445777764321 11110 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEE-EEe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR-VVL 357 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ii-iVl 357 (545)
.++.|+||||... |.......+..+|.+++++|+.. +......+.+..+...+.|.+ +++
T Consensus 75 -------~~~~liDtpGh~~-----------f~~~~~~~~~~~D~~ilVvda~~-g~~~qt~e~l~~~~~~gi~~iIvvv 135 (394)
T TIGR00485 75 -------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSATD-GPMPQTREHILLARQVGVPYIVVFL 135 (394)
T ss_pred -------EEEEEEECCchHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEE
Confidence 3689999999832 11122334578999999999986 556677777777777777755 689
Q ss_pred cCCCCCCHHHHHHHH-HHHHHHhcccc-cCCccEEEEeeccCCCc
Q 009050 358 NKADQVDTQQLMRVY-GALMWSLGKVL-NTPEVVRVYIGSFNDKP 400 (545)
Q Consensus 358 NK~D~~~~~~l~~v~-~~l~~~l~k~~-~~~~v~~v~iSa~~~~~ 400 (545)
||+|+++.++..+.. ..+...+.... ....++.+++||++|.+
T Consensus 136 NK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~ 180 (394)
T TIGR00485 136 NKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALE 180 (394)
T ss_pred EecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccc
Confidence 999998755433221 12211122211 11125568999998853
No 208
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.30 E-value=1.3e-11 Score=120.36 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=61.2
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhc-CCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeEEEEecCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAA-KCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIRVVLNKAD 361 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~-~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~iiiVlNK~D 361 (545)
.+.++||||... .+ ...+.. .+|++++++|+++....+....++..+.. .+.|+++|.||+|
T Consensus 51 ~l~i~Dt~G~~~----~~---------~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~D 117 (221)
T cd04148 51 TLVVIDHWEQEM----WT---------EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSD 117 (221)
T ss_pred EEEEEeCCCcch----HH---------HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence 688999999841 11 112345 89999999999874333444556655543 3579999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 362 QVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 362 ~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+....++...... .+....+ ...+++||.++.|+++
T Consensus 118 l~~~~~v~~~~~~---~~a~~~~---~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 118 LARSREVSVQEGR---ACAVVFD---CKFIETSAGLQHNVDE 153 (221)
T ss_pred ccccceecHHHHH---HHHHHcC---CeEEEecCCCCCCHHH
Confidence 8754322111100 1111112 2237899999999885
No 209
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.30 E-value=2.3e-11 Score=137.08 Aligned_cols=151 Identities=23% Similarity=0.323 Sum_probs=95.7
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhh
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSK 274 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~ 274 (545)
..|.|+|+|..|+|||||+++|.+..+ ..+..+ |.|.... ..+.+.+
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v---~~~e~~------------------GIT~~iga~~v~~~~----------- 336 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNV---AAGEAG------------------GITQHIGAYQVETNG----------- 336 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc---cccccC------------------ceeeeccEEEEEECC-----------
Confidence 446999999999999999999987664 112111 1111000 0001111
Q ss_pred hhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEE
Q 009050 275 FECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR 354 (545)
Q Consensus 275 ~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ii 354 (545)
..++|+||||... |..+....+..+|++|+|+|+.. +...+..+.+..+...+.|++
T Consensus 337 -----------~~ItfiDTPGhe~-----------F~~m~~rga~~aDiaILVVdAdd-Gv~~qT~e~i~~a~~~~vPiI 393 (787)
T PRK05306 337 -----------GKITFLDTPGHEA-----------FTAMRARGAQVTDIVVLVVAADD-GVMPQTIEAINHAKAAGVPII 393 (787)
T ss_pred -----------EEEEEEECCCCcc-----------chhHHHhhhhhCCEEEEEEECCC-CCCHhHHHHHHHHHhcCCcEE
Confidence 2789999999743 22223344688999999999986 556677777777777889999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccc--cCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVL--NTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~--~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++||+|+.+. +..++...+.. .+... ....++.+++||++|.|+++
T Consensus 394 VviNKiDl~~a-~~e~V~~eL~~-~~~~~e~~g~~vp~vpvSAktG~GI~e 442 (787)
T PRK05306 394 VAINKIDKPGA-NPDRVKQELSE-YGLVPEEWGGDTIFVPVSAKTGEGIDE 442 (787)
T ss_pred EEEECcccccc-CHHHHHHHHHH-hcccHHHhCCCceEEEEeCCCCCCchH
Confidence 99999999642 12222222210 11100 01234558999999999886
No 210
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.29 E-value=3.9e-12 Score=129.09 Aligned_cols=155 Identities=26% Similarity=0.344 Sum_probs=105.1
Q ss_pred eeeEEeC-CcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCC-----------CcccceEEEEe
Q 009050 176 EVTYRFN-DFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPE-----------PTTDRFVVVMS 241 (545)
Q Consensus 176 ~~~~~~~-~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~-----------p~t~r~~i~~~ 241 (545)
.+++.|+ .. .++++++|...+ +++|+|+||||||||||+|+|...| +++. +...+..+.+.
T Consensus 9 ~l~k~~~~~~--~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p---~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 9 NLTKKYGGDK--TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred ceEEEeCCCC--EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEEcCEeCccCHHHHHhheEEE
Confidence 3455777 43 499999999987 9999999999999999999999864 2221 11223334444
Q ss_pred CCCccccCCceeEeecCCCCCCccccccc-chhhh------hhhcCchhhccCceeec----CCCCCC-hhhhhhhhccC
Q 009050 242 GVDDRSIPGNTVAVQADMPFSGLTTFGTA-FLSKF------ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 242 ~~~~~~~~g~t~~~~~~~~~~gl~~~~~~-~~~~~------~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~ 309 (545)
.+.+...+..|+ .... |...+ .......++++.+.+.+ ..+-+| |++||+.
T Consensus 84 ~~~~~~~~~lT~-------------~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~---- 146 (293)
T COG1131 84 PQEPSLYPELTV-------------RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLS---- 146 (293)
T ss_pred ccCCCCCccccH-------------HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHH----
Confidence 444443333332 2221 11111 12234566777777774 245566 8999998
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCC-CeEEEEec
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHD-DKIRVVLN 358 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~-~~iiiVlN 358 (545)
+|.+++.+|+++|+ .+|+.. ..++.++++.+...+ ..|++..|
T Consensus 147 ---ia~aL~~~P~lliLDEPt~GLDp~~---~~~~~~~l~~l~~~g~~tvlissH 195 (293)
T COG1131 147 ---IALALLHDPELLILDEPTSGLDPES---RREIWELLRELAKEGGVTILLSTH 195 (293)
T ss_pred ---HHHHHhcCCCEEEECCCCcCCCHHH---HHHHHHHHHHHHhCCCcEEEEeCC
Confidence 89999999999999 788764 678889999998877 56666666
No 211
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.28 E-value=1.2e-11 Score=113.01 Aligned_cols=165 Identities=22% Similarity=0.346 Sum_probs=103.9
Q ss_pred eeeEEeCCcccCcccccccccCceEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc----cceEEEEeCCCcccc
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT----DRFVVVMSGVDDRSI 248 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t----~r~~i~~~~~~~~~~ 248 (545)
.+.+.|+.. +.-=++.+..+.+|+|+|++|||||||+|.+.|...| |.+ +.+.-.| ....+.|.+++....
T Consensus 6 ~V~~~y~~~--~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLF 83 (231)
T COG3840 6 DVRFSYGHL--PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLF 83 (231)
T ss_pred ceEEeeCcc--eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccc
Confidence 355567653 2445677777789999999999999999999999976 111 1111111 122344555555544
Q ss_pred CCceeEeecCCCCC-CcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCC
Q 009050 249 PGNTVAVQADMPFS-GLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (545)
Q Consensus 249 ~g~t~~~~~~~~~~-gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aD 322 (545)
...|+..+..+... |+.- + -+..+..+.++.++.+-+ .||.+| |++||++ +||.++++-.
T Consensus 84 aHLtV~qNigLGl~P~LkL------~-a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvA-------LARclvR~~P 149 (231)
T COG3840 84 AHLTVAQNIGLGLSPGLKL------N-AEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVA-------LARCLVREQP 149 (231)
T ss_pred hhhhhhhhhcccCCccccc------C-HHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHH-------HHHHHhccCC
Confidence 44444222221110 1100 0 022233445556777665 799999 7999999 8999998888
Q ss_pred EEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 323 LILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 323 liLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
++++ .+|+ .+..+...++..+.. .+.++++|.+.
T Consensus 150 ilLLDEPFsALdP---~LR~eMl~Lv~~l~~E~~~TllmVTH~ 189 (231)
T COG3840 150 ILLLDEPFSALDP---ALRAEMLALVSQLCDERKMTLLMVTHH 189 (231)
T ss_pred eEEecCchhhcCH---HHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 8777 4554 457888888888864 46688888884
No 212
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.28 E-value=4.4e-11 Score=112.44 Aligned_cols=151 Identities=20% Similarity=0.198 Sum_probs=89.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|+|||||+++++...++. ...|+... .... . ..+.+- .
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~---~~~~Ti~~-~~~~-----------~------~~~~~~----~--------- 48 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFD-NFSA-----------N------VSVDGN----T--------- 48 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CCCCccee-eeEE-----------E------EEECCE----E---------
Confidence 58999999999999999999876521 11222211 1000 0 000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHH-HHHHHHHhc--CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRG--HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~-~~~l~~L~~--~~~~iii 355 (545)
-.+.|+||+|.-. |..+...++.++|.+|+++|.++....+.. ..|+..++. .+.|+++
T Consensus 49 -------v~l~i~Dt~G~~~-----------~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piil 110 (176)
T cd04133 49 -------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVL 110 (176)
T ss_pred -------EEEEEEECCCCcc-----------ccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 2688999999732 111334467899999999999874444444 357776653 3679999
Q ss_pred EecCCCCCCHHHH-------HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQL-------MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l-------~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.+.... ..+.......+.+..+.. ..+.+||++|.++++
T Consensus 111 vgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~--~~~E~SAk~~~nV~~ 163 (176)
T cd04133 111 VGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAA--AYIECSSKTQQNVKA 163 (176)
T ss_pred EEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCC--EEEECCCCcccCHHH
Confidence 9999998643210 001000001112222221 237899999999875
No 213
>PRK00007 elongation factor G; Reviewed
Probab=99.28 E-value=1.2e-11 Score=139.88 Aligned_cols=159 Identities=20% Similarity=0.233 Sum_probs=101.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEe-ecCCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAV-QADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~-~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+|+|++|+|||||+|+|+...-.-...+.. ...+..+.....+..+|+|+.. ...+.+.+
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v---~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~-------------- 74 (693)
T PRK00007 12 NIGIMAHIDAGKTTTTERILFYTGVNHKIGEV---HDGAATMDWMEQEQERGITITSAATTCFWKD-------------- 74 (693)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCccccccc---cCCcccCCCCHHHHhCCCCEeccEEEEEECC--------------
Confidence 79999999999999999998433100111111 1112233333444566777632 22222222
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
.+++|+||||... |..-+...+..+|++++|+|+.. +...+...++..+...+.|+++++
T Consensus 75 --------~~~~liDTPG~~~-----------f~~ev~~al~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~~~p~iv~v 134 (693)
T PRK00007 75 --------HRINIIDTPGHVD-----------FTIEVERSLRVLDGAVAVFDAVG-GVEPQSETVWRQADKYKVPRIAFV 134 (693)
T ss_pred --------eEEEEEeCCCcHH-----------HHHHHHHHHHHcCEEEEEEECCC-CcchhhHHHHHHHHHcCCCEEEEE
Confidence 3899999999743 11124455788999999999987 678888899999988899999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCC
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFND 398 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~ 398 (545)
||+|..... ..++...+...++.. ..+..+++|+..+
T Consensus 135 NK~D~~~~~-~~~~~~~i~~~l~~~---~~~~~ipisa~~~ 171 (693)
T PRK00007 135 NKMDRTGAD-FYRVVEQIKDRLGAN---PVPIQLPIGAEDD 171 (693)
T ss_pred ECCCCCCCC-HHHHHHHHHHHhCCC---eeeEEecCccCCc
Confidence 999998532 334444443333321 1223467887666
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.28 E-value=5.9e-11 Score=130.95 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=49.7
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~ 363 (545)
.++|+||||... |..+....+..+|++++++|++. +...+..+.+..+...+.|+++++||+|+.
T Consensus 72 ~i~~iDTPG~e~-----------f~~~~~~~~~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 72 GLLFIDTPGHEA-----------FTNLRKRGGALADIAILVVDINE-GFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred CEEEEECCChHH-----------HHHHHHHhHhhCCEEEEEEECCC-CCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 478999999842 21223344678999999999986 455666677777777789999999999985
No 215
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.28 E-value=5.2e-12 Score=133.80 Aligned_cols=173 Identities=21% Similarity=0.260 Sum_probs=113.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVA 254 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~ 254 (545)
+++.|+... ++++++|+..+ +++|+|.||||||||++.|+|...| .+.+..-....+.+..+......|....
T Consensus 14 i~K~FggV~--AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p---~~G~I~~~G~~~~~~sp~~A~~~GI~~V 88 (500)
T COG1129 14 ISKSFGGVK--ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP---DSGEILIDGKPVAFSSPRDALAAGIATV 88 (500)
T ss_pred ceEEcCCce--eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC---CCceEEECCEEccCCCHHHHHhCCcEEE
Confidence 445788854 99999999988 9999999999999999999998843 3333222222222223333344555555
Q ss_pred eecCCCCCCcccccccch-----------hhhhhhcCchhhccCcee---ecC-CCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 255 VQADMPFSGLTTFGTAFL-----------SKFECSQMPHSLLEHITL---VDT-PGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 255 ~~~~~~~~gl~~~~~~~~-----------~~~~~~~~~~~lL~~v~l---iDT-PG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
.+.-..+..++...|.|+ .+......+..+|..+.+ .|+ .|.+| +++|.++ +|+++.
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~Ve-------IArAl~ 161 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVE-------IARALS 161 (500)
T ss_pred eechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHH-------HHHHHh
Confidence 544433444444444433 333444556677777666 333 26666 7889888 999999
Q ss_pred cCCCEEEEEeCCCCCC--ccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 319 AKCDLILLLFDPHKLD--ISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 319 ~~aDliLlvlD~~~~~--~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
.++.++|+-=-.+.++ -.+.+.++++.|+..|..+++|-|++|
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~ 206 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD 206 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH
Confidence 9999777721111111 134567788899999999999999975
No 216
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=4.1e-11 Score=110.19 Aligned_cols=149 Identities=20% Similarity=0.249 Sum_probs=101.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|..|+||||||++.+-..+. .+ ...+|...+... + +.+.+.
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd---~~-----YqATIGiDFlsk------t------~~l~d~------------- 69 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFD---NT-----YQATIGIDFLSK------T------MYLEDR------------- 69 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhc---cc-----ccceeeeEEEEE------E------EEEcCc-------------
Confidence 48999999999999999999876651 11 111221111100 0 001111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC-C---CeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH-D---DKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~-~---~~i 353 (545)
-.++.||||+|. |+ |..++-.+++++.++|.++|.++....+....||+.+... + .-+
T Consensus 70 -------~vrLQlWDTAGQ---ER--------FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI 131 (221)
T KOG0094|consen 70 -------TVRLQLWDTAGQ---ER--------FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVII 131 (221)
T ss_pred -------EEEEEEEecccH---HH--------HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEE
Confidence 027889999998 33 5557889999999999999999877777888999887643 2 357
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||.|++++.++....+.. .++.++. ..+.+||+.|.++..
T Consensus 132 ~LVGnKtDL~dkrqvs~eEg~~---kAkel~a---~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 132 FLVGNKTDLSDKRQVSIEEGER---KAKELNA---EFIETSAKAGENVKQ 175 (221)
T ss_pred EEEcccccccchhhhhHHHHHH---HHHHhCc---EEEEecccCCCCHHH
Confidence 8899999999987665443332 2333332 336899999999874
No 217
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.28 E-value=4.8e-12 Score=129.43 Aligned_cols=166 Identities=27% Similarity=0.323 Sum_probs=102.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CC-CCCCCC-----cccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GA-HIGPEP-----TTDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~-~v~~~p-----~t~r~~i~~~~~~~~ 246 (545)
+++.|+.. .++++++|+..+ +++|+|+||||||||++.|+|...| |. .+.+.+ ...+..+.+.+++..
T Consensus 13 l~k~~~~~--~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~ 90 (306)
T PRK13537 13 VEKRYGDK--LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDN 90 (306)
T ss_pred EEEEECCe--EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCc
Confidence 44467653 489999999876 9999999999999999999998754 11 011111 111233444444443
Q ss_pred ccCCceeEeecCCCCCCcccccccc-hhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAF-LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~-~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
..+..|+..... + ++..+ ....+......++++.+.+.+ .++.+| |++|++. +|++++.+
T Consensus 91 ~~~~~tv~e~l~--~-----~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~aL~~~ 156 (306)
T PRK13537 91 LDPDFTVRENLL--V-----FGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLT-------LARALVND 156 (306)
T ss_pred CCCCCcHHHHHH--H-----HHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHH-------HHHHHhCC
Confidence 333333211000 0 00000 001111223345555555543 446677 8999998 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
|+++|+ .+|+.. ..++.+++..+++.+..++++.|..+
T Consensus 157 P~lllLDEPt~gLD~~~---~~~l~~~l~~l~~~g~till~sH~l~ 199 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQA---RHLMWERLRSLLARGKTILLTTHFME 199 (306)
T ss_pred CCEEEEeCCCcCCCHHH---HHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 999999 677754 56778888888777788888877433
No 218
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.27 E-value=5.9e-12 Score=131.06 Aligned_cols=168 Identities=24% Similarity=0.316 Sum_probs=109.9
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc-------------ceEEEE
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-------------RFVVVM 240 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-------------r~~i~~ 240 (545)
..++.|..+. +.++++|+..+ +.+|+|.||||||||+|.|.|...| .+.+.... +.-|.|
T Consensus 9 ~itK~f~~~~--And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P---~~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 9 GITKRFPGVV--ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP---DSGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred ccEEEcCCEE--ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC---CcceEEECCEEeccCCHHHHHHcCCcE
Confidence 3455788766 89999999887 9999999999999999999999865 23322222 233556
Q ss_pred eCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCcee-ec---CCCCCC-hhhhhhhhccChHHHHH
Q 009050 241 SGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITL-VD---TPGVLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 241 ~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~l-iD---TPG~~s-gekq~v~~~~~~~~ia~ 315 (545)
..|++..++..|+..+.-...... ....+..........++.+++.| +| .-+-+| |++||++ +.+
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~---~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVE-------IlK 153 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPS---KGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVE-------ILK 153 (501)
T ss_pred EeeccccccccchhhhhhhcCccc---cccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHH-------HHH
Confidence 666666666666533322111100 00011111222233333334433 22 234445 8999999 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
++..+++++|| ++-+.. .+++..+++.+++.|+.|+++.||.+
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E---~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQE---ADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 99999999998 554443 46777888899999999999999965
No 219
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.27 E-value=3.2e-11 Score=117.45 Aligned_cols=147 Identities=19% Similarity=0.169 Sum_probs=87.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+++++...+. ....|+....... .. +...+ +.
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~---~~~~~tig~~~~~-------------~~----~~~~~----~~-------- 61 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHP-------------LD----FFTNC----GK-------- 61 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCC---CccCCccceeEEE-------------EE----EEECC----eE--------
Confidence 48999999999999999998766541 1111211100000 00 00000 00
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc--CCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~--~~~~iii 355 (545)
..+.+|||||... |..+...+...+|.+|+++|.++.........|+..+.. .+.|+++
T Consensus 62 --------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piil 122 (219)
T PLN03071 62 --------IRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 122 (219)
T ss_pred --------EEEEEEECCCchh-----------hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence 2688999999732 112344567899999999999874333444566666543 3579999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.......... .+ .+. .....+.+||++|.|+.+
T Consensus 123 vgNK~Dl~~~~v~~~~~-~~----~~~---~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 123 CGNKVDVKNRQVKAKQV-TF----HRK---KNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEchhhhhccCCHHHH-HH----HHh---cCCEEEEcCCCCCCCHHH
Confidence 99999985321101111 11 111 123347899999999886
No 220
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.27 E-value=4.2e-11 Score=114.06 Aligned_cols=152 Identities=16% Similarity=0.174 Sum_probs=88.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|..|||||||+++++...++. ...|+.. .... ..+ .+.+- .
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~---~~~~t~~-~~~~-----------~~~------~~~~~----~-------- 50 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPK---EYIPTVF-DNYS-----------AQT------AVDGR----T-------- 50 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCc---CCCCceE-eeeE-----------EEE------EECCE----E--------
Confidence 379999999999999999999876521 1112211 0000 000 00010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~ii 354 (545)
-.+.++||||.-. |..+...+..++|++|+++|.++....+... .|+..+.. .+.|++
T Consensus 51 --------~~l~i~Dt~G~e~-----------~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~pii 111 (191)
T cd01875 51 --------VSLNLWDTAGQEE-----------YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPIL 111 (191)
T ss_pred --------EEEEEEECCCchh-----------hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE
Confidence 1678999999832 2224455678999999999998744334443 34444432 367999
Q ss_pred EEecCCCCCCHHHHHHHHHH---------HHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~---------l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||.|+.+.....+.... ....+++... ....+.+||++|.|+++
T Consensus 112 lvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~--~~~~~e~SAk~g~~v~e 167 (191)
T cd01875 112 LVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH--AVKYLECSALNQDGVKE 167 (191)
T ss_pred EEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC--CcEEEEeCCCCCCCHHH
Confidence 99999998643221111100 0001111111 12347899999999875
No 221
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.27 E-value=8e-11 Score=115.34 Aligned_cols=115 Identities=22% Similarity=0.293 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|..|||||||++.+++..++. ...|+....... .+ .+.+- .
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~~---~y~pTi~~~~~~------------~i------~~~~~----~-------- 60 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYPE---TYVPTVFENYTA------------GL------ETEEQ----R-------- 60 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCCC---CcCCceeeeeEE------------EE------EECCE----E--------
Confidence 379999999999999999999877521 122221100000 00 00010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHH-HHHHHHHHhc--CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDE-FKRVITSLRG--HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~-~~~~l~~L~~--~~~~ii 354 (545)
-.+.||||+|.-. |..+...+..++|++++++|.++....+. ...|+..+.. .+.|++
T Consensus 61 --------v~l~iwDTaG~e~-----------~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~pii 121 (232)
T cd04174 61 --------VELSLWDTSGSPY-----------YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRIL 121 (232)
T ss_pred --------EEEEEEeCCCchh-----------hHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 2688999999621 22244556899999999999987433333 2455666653 356899
Q ss_pred EEecCCCCCC
Q 009050 355 VVLNKADQVD 364 (545)
Q Consensus 355 iVlNK~D~~~ 364 (545)
+|.||+|+.+
T Consensus 122 lVgNK~DL~~ 131 (232)
T cd04174 122 LIGCKTDLRT 131 (232)
T ss_pred EEEECccccc
Confidence 9999999853
No 222
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.26 E-value=6.2e-12 Score=130.25 Aligned_cols=160 Identities=23% Similarity=0.231 Sum_probs=100.8
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC-----cccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP-----TTDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p-----~t~r~~i~~~~~~~~ 246 (545)
+++.|++. .++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +.+.+ ...+..+.+.++...
T Consensus 47 l~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~ 124 (340)
T PRK13536 47 VSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDN 124 (340)
T ss_pred EEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCcc
Confidence 44467664 489999998877 9999999999999999999998754 100 00000 011223344444333
Q ss_pred ccCCceeEeecCCCCCCccccccc-chh------hhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHH
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTA-FLS------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVT 314 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~-~~~------~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia 314 (545)
..+..++ ..+. +.. ..........+++.+.+-+ .++.+| |++|++. +|
T Consensus 125 ~~~~~tv-------------~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~-------lA 184 (340)
T PRK13536 125 LDLEFTV-------------RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLT-------LA 184 (340)
T ss_pred CCCCCcH-------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHH-------HH
Confidence 2222222 1111 000 0011122334555555543 456677 8999988 89
Q ss_pred HHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 315 ~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
++++.+|+++|+ .+|+.. ..++.+++..+...+..++++.|..+
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~---r~~l~~~l~~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHA---RHLIWERLRSLLARGKTILLTTHFME 233 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 999999999999 677754 56788888888777788888888443
No 223
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.26 E-value=7.8e-11 Score=115.20 Aligned_cols=140 Identities=23% Similarity=0.275 Sum_probs=88.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.+|+|+|++|+|||||+|.|++.... ..++. ..|+.. ... ..+
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~-~~~~~------------------~~g~i~-i~~---~~~-------------- 82 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTK-QNISD------------------IKGPIT-VVT---GKK-------------- 82 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccc-Ccccc------------------ccccEE-EEe---cCC--------------
Confidence 48999999999999999999986420 11111 112100 000 001
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeE-EEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKI-RVV 356 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~i-iiV 356 (545)
.++.++||||.. . -+...+..+|++++++|+.. +.......++..+...+.|. ++|
T Consensus 83 --------~~i~~vDtPg~~---~-----------~~l~~ak~aDvVllviDa~~-~~~~~~~~i~~~l~~~g~p~vi~V 139 (225)
T cd01882 83 --------RRLTFIECPNDI---N-----------AMIDIAKVADLVLLLIDASF-GFEMETFEFLNILQVHGFPRVMGV 139 (225)
T ss_pred --------ceEEEEeCCchH---H-----------HHHHHHHhcCEEEEEEecCc-CCCHHHHHHHHHHHHcCCCeEEEE
Confidence 378999999863 1 12234688999999999986 55666777888887777774 559
Q ss_pred ecCCCCCCH-HHHHHHHHHHHHHhc-ccccCCccEEEEeeccCCC
Q 009050 357 LNKADQVDT-QQLMRVYGALMWSLG-KVLNTPEVVRVYIGSFNDK 399 (545)
Q Consensus 357 lNK~D~~~~-~~l~~v~~~l~~~l~-k~~~~~~v~~v~iSa~~~~ 399 (545)
+||+|+++. +....+...+...+. +.+....+ +++||++.-
T Consensus 140 vnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki--~~iSa~~~~ 182 (225)
T cd01882 140 LTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKL--FYLSGIVHG 182 (225)
T ss_pred EeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcE--EEEeeccCC
Confidence 999999843 334444444432222 23344444 899999763
No 224
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.26 E-value=4.3e-11 Score=133.76 Aligned_cols=156 Identities=19% Similarity=0.305 Sum_probs=95.7
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
..|.|+|+|..|+|||||+++|.+..+ . .+..++.|...-.+ .+ .+.+.+ .+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~--~-~~e~~GiTq~i~~~-----------~v----~~~~~~---~~------- 294 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQI--A-QKEAGGITQKIGAY-----------EV----EFEYKD---EN------- 294 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccC--c-cccCCccccccceE-----------EE----EEEecC---Cc-------
Confidence 345999999999999999999998764 1 11111111110000 00 000000 00
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..++|+||||... |.......+..+|++|+|+|+.. +...+..+.+..+...+.|+++
T Consensus 295 ----------~kItfiDTPGhe~-----------F~~mr~rg~~~aDiaILVVDA~d-Gv~~QT~E~I~~~k~~~iPiIV 352 (742)
T CHL00189 295 ----------QKIVFLDTPGHEA-----------FSSMRSRGANVTDIAILIIAADD-GVKPQTIEAINYIQAANVPIIV 352 (742)
T ss_pred ----------eEEEEEECCcHHH-----------HHHHHHHHHHHCCEEEEEEECcC-CCChhhHHHHHHHHhcCceEEE
Confidence 2789999999732 22234456789999999999986 5556667777777778899999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhccccc--CCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLN--TPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~--~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+... ...++...+.. .+.... ...++.+++||++|.|+++
T Consensus 353 ViNKiDl~~~-~~e~v~~eL~~-~~ll~e~~g~~vpvv~VSAktG~GIde 400 (742)
T CHL00189 353 AINKIDKANA-NTERIKQQLAK-YNLIPEKWGGDTPMIPISASQGTNIDK 400 (742)
T ss_pred EEECCCcccc-CHHHHHHHHHH-hccchHhhCCCceEEEEECCCCCCHHH
Confidence 9999998752 12222222210 000000 1124558999999999886
No 225
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.26 E-value=3.6e-12 Score=131.86 Aligned_cols=159 Identities=21% Similarity=0.276 Sum_probs=101.0
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc---------cceEEEEeCCCccccCCce
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT---------DRFVVVMSGVDDRSIPGNT 252 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t---------~r~~i~~~~~~~~~~~g~t 252 (545)
.++++++|+..+ +++|+|++|||||||++.|+|...| |.+ +...+-+ .+..+.+.+++....+..|
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t 98 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence 589999998877 9999999999999999999999854 111 0111000 1223455555444333333
Q ss_pred eEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-
Q 009050 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL- 326 (545)
Q Consensus 253 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl- 326 (545)
+..+..++. ...+ ..+.+......++++.+.+.| .|+.+| |++||+. +|++++.+|+++|+
T Consensus 99 v~eni~~~~---~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~-------IARAL~~~P~iLLlD 165 (343)
T TIGR02314 99 VFGNVALPL---ELDN---TPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVA-------IARALASNPKVLLCD 165 (343)
T ss_pred HHHHHHHHH---HHcC---CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------HHHHHHhCCCEEEEe
Confidence 211100000 0000 011122233456677777754 678888 8999998 99999999999999
Q ss_pred ----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCCC
Q 009050 327 ----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKAD 361 (545)
Q Consensus 327 ----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~D 361 (545)
.+|+.. ...+.++++.+.+. +.+++++.|.++
T Consensus 166 EPts~LD~~t---~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 166 EATSALDPAT---TQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred CCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 566653 56777888888654 788999888443
No 226
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.25 E-value=5.1e-11 Score=115.51 Aligned_cols=133 Identities=18% Similarity=0.238 Sum_probs=77.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCC-CCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP-EPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~-~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~ 276 (545)
.|+|+|+.|+|||||+++|++... ..... .+.. .....+.....+...|.++.... .+.+.+.. +.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~--~~~~~~~~~~-~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~--~~------- 69 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTH--DLTPSGKDGW-KPLRYTDIRKDEQERGISIKSSPISLVLPDSK--GK------- 69 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcC--CCcccccccC-CceeECCCCHHHHHcCccccccceeEEEEcCC--CC-------
Confidence 489999999999999999998764 22100 0000 00111111111122333331110 01010000 00
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiV 356 (545)
-..+.++||||... |...+...+..+|.+++++|+.. +.......+++.+...+.|+++|
T Consensus 70 --------~~~i~iiDtpG~~~-----------f~~~~~~~~~~aD~~llVvD~~~-~~~~~~~~~~~~~~~~~~p~iiv 129 (213)
T cd04167 70 --------SYLFNIIDTPGHVN-----------FMDEVAAALRLSDGVVLVVDVVE-GVTSNTERLIRHAILEGLPIVLV 129 (213)
T ss_pred --------EEEEEEEECCCCcc-----------hHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEE
Confidence 02689999999853 22234456789999999999986 34455556666666567899999
Q ss_pred ecCCCCC
Q 009050 357 LNKADQV 363 (545)
Q Consensus 357 lNK~D~~ 363 (545)
+||+|.+
T Consensus 130 iNK~D~~ 136 (213)
T cd04167 130 INKIDRL 136 (213)
T ss_pred EECcccC
Confidence 9999986
No 227
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.25 E-value=4.3e-11 Score=128.26 Aligned_cols=168 Identities=18% Similarity=0.206 Sum_probs=107.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCC-------------CCcccceEEEEeCCCccccCCceeEeec-CCCCCCc
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP-------------EPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGL 264 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~-------------~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl 264 (545)
.|+++|+.++|||||+.+|+...- . +.. .-.+.+...++....++...|.|..... .+.+.+
T Consensus 9 nv~i~Ghvd~GKSTL~~~Ll~~~g--~-i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~- 84 (446)
T PTZ00141 9 NLVVIGHVDSGKSTTTGHLIYKCG--G-IDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK- 84 (446)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcC--C-cChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC-
Confidence 699999999999999999986431 1 111 0112222234555555667788774321 111111
Q ss_pred ccccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCc-------cH
Q 009050 265 TTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDI-------SD 337 (545)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~-------~~ 337 (545)
..++|+||||... |..-+...+..+|++++++|+.. +. ..
T Consensus 85 ---------------------~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~-G~~e~~~~~~~ 131 (446)
T PTZ00141 85 ---------------------YYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTA-GEFEAGISKDG 131 (446)
T ss_pred ---------------------eEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCC-CceecccCCCc
Confidence 3789999999632 22234455789999999999986 33 24
Q ss_pred HHHHHHHHHhcCCCe-EEEEecCCCC--C--CHHHHHHHHHHHHHHhcccc-cCCccEEEEeeccCCCccCc
Q 009050 338 EFKRVITSLRGHDDK-IRVVLNKADQ--V--DTQQLMRVYGALMWSLGKVL-NTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 338 ~~~~~l~~L~~~~~~-iiiVlNK~D~--~--~~~~l~~v~~~l~~~l~k~~-~~~~v~~v~iSa~~~~~~~~ 403 (545)
+..+.+..+...+.+ +++++||+|. + +.+.+.++...+...+++.- ....++.+++|+++|.|+.+
T Consensus 132 qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 132 QTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 566677777777765 6799999994 3 23445555555544444321 11346679999999999875
No 228
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=6.6e-12 Score=130.85 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=104.0
Q ss_pred eeEEe-CCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CC------CCCCCCcccceEEEEeCCCc
Q 009050 177 VTYRF-NDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GA------HIGPEPTTDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~-~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~------~v~~~p~t~r~~i~~~~~~~ 245 (545)
+++.| +. ..++++++|+..+ +++|+|++|||||||+++|+|...| |. .+...+. .+..+.+.+++.
T Consensus 9 l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~-~~r~ig~v~Q~~ 85 (356)
T PRK11650 9 VRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP-ADRDIAMVFQNY 85 (356)
T ss_pred EEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHCCEEEEeCCc
Confidence 34466 44 3488999988876 9999999999999999999999864 11 1111111 123455566655
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
...|..|+..+..+... ..+ ..+.+......++++.+.+-+ .|+.+| |++||+. +|++++.+
T Consensus 86 ~lfp~~tv~eNi~~~~~---~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRva-------lARAL~~~ 152 (356)
T PRK11650 86 ALYPHMSVRENMAYGLK---IRG---MPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVA-------MGRAIVRE 152 (356)
T ss_pred cccCCCCHHHHHHhHHh---hcC---CCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHH-------HHHHHhcC
Confidence 55555444211111110 000 011112233445566666543 677888 8999999 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
|+++|+ .+|+.. ...+.+.++.+.+ .+.++++|.|..
T Consensus 153 P~llLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tii~vTHd~ 195 (356)
T PRK11650 153 PAVFLFDEPLSNLDAKL---RVQMRLEIQRLHRRLKTTSLYVTHDQ 195 (356)
T ss_pred CCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999998 566543 4666777777765 478999998843
No 229
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.25 E-value=8.8e-11 Score=118.22 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=41.2
Q ss_pred CCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHH
Q 009050 320 KCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRV 371 (545)
Q Consensus 320 ~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v 371 (545)
++|+++++++++..++...+.++++.+.+ +.++++|+||+|++...++...
T Consensus 114 rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~e~~~~ 164 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTPEELKEF 164 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCHHHHHHH
Confidence 57899999998764566777889999986 6899999999999886655443
No 230
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.25 E-value=1.5e-11 Score=115.47 Aligned_cols=148 Identities=22% Similarity=0.251 Sum_probs=91.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|+.||||||+++.|..... .. ..|+ ..+.+. .+.+.+
T Consensus 15 ~~ililGl~~sGKTtll~~l~~~~~--~~--~~pT-~g~~~~------------------~i~~~~-------------- 57 (175)
T PF00025_consen 15 IKILILGLDGSGKTTLLNRLKNGEI--SE--TIPT-IGFNIE------------------EIKYKG-------------- 57 (175)
T ss_dssp EEEEEEESTTSSHHHHHHHHHSSSE--EE--EEEE-SSEEEE------------------EEEETT--------------
T ss_pred EEEEEECCCccchHHHHHHhhhccc--cc--cCcc-cccccc------------------eeeeCc--------------
Confidence 4899999999999999999987553 11 2222 122211 011112
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.++|.+|..+- .. +.+.+..++|.+|+|+|+++.....+..+.+..+.. .+.|+
T Consensus 58 --------~~~~~~d~gG~~~~--~~---------~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~pi 118 (175)
T PF00025_consen 58 --------YSLTIWDLGGQESF--RP---------LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPI 118 (175)
T ss_dssp --------EEEEEEEESSSGGG--GG---------GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEE
T ss_pred --------EEEEEEeccccccc--cc---------cceeeccccceeEEEEecccceeecccccchhhhcchhhcccceE
Confidence 26889999987431 11 123457899999999999864333444444544422 46899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++++||.|..+.....++...+ .+.++.....+..+.+||.+|+|+.+
T Consensus 119 LIl~NK~D~~~~~~~~~i~~~l--~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 119 LILANKQDLPDAMSEEEIKEYL--GLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp EEEEESTTSTTSSTHHHHHHHT--TGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred EEEeccccccCcchhhHHHhhh--hhhhcccCCceEEEeeeccCCcCHHH
Confidence 9999999987543333333322 12222223445567899999999886
No 231
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.25 E-value=4.5e-11 Score=125.84 Aligned_cols=111 Identities=19% Similarity=0.188 Sum_probs=60.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|.||||||||+|+|++.. ..+++.|.||.........-....+..-+.. ...+..+....+
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~---~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~-~~~~~~~~~~~~---------- 68 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLAD---VEIANYPFTTIDPNVGVAYVRVECPCKELGV-KCNPRNGKCIDG---------- 68 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc---ccccCCCCcceeeeeeeeeeccCCchhhhhh-hhccccccccCC----------
Confidence 69999999999999999999987 5667778777544321100000000000000 000000000000
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCC
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPH 331 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~ 331 (545)
.....+.++||||+..|..+.-..+- .....++++|++++|+|+.
T Consensus 69 ----~~~~~i~i~D~aGl~~ga~~g~glg~----~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 69 ----TRFIPVELIDVAGLVPGAHEGRGLGN----QFLDDLRQADALIHVVDAS 113 (396)
T ss_pred ----cceeeEEEEEcCCcCCCccchhhHHH----HHHHHHHHCCEEEEEEeCC
Confidence 00126889999999765322211000 1122389999999999986
No 232
>PRK12739 elongation factor G; Reviewed
Probab=99.24 E-value=2.4e-11 Score=137.36 Aligned_cols=130 Identities=20% Similarity=0.243 Sum_probs=88.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+|+|+.|+|||||+|+|+...-.....+. .......+.....+..+|+|+... ..+.+.+
T Consensus 10 ni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~---v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~-------------- 72 (691)
T PRK12739 10 NIGIMAHIDAGKTTTTERILYYTGKSHKIGE---VHDGAATMDWMEQEQERGITITSAATTCFWKG-------------- 72 (691)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCcccccc---ccCCccccCCChhHhhcCCCccceeEEEEECC--------------
Confidence 7999999999999999999864310011111 011122333334445667766322 2222222
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
.+++|+||||... |...+...+..+|++++++|+.. +.......++..+...+.|+++++
T Consensus 73 --------~~i~liDTPG~~~-----------f~~e~~~al~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~~~p~iv~i 132 (691)
T PRK12739 73 --------HRINIIDTPGHVD-----------FTIEVERSLRVLDGAVAVFDAVS-GVEPQSETVWRQADKYGVPRIVFV 132 (691)
T ss_pred --------EEEEEEcCCCHHH-----------HHHHHHHHHHHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEE
Confidence 3799999999843 21234556789999999999987 667778888888888889999999
Q ss_pred cCCCCCCH
Q 009050 358 NKADQVDT 365 (545)
Q Consensus 358 NK~D~~~~ 365 (545)
||+|+...
T Consensus 133 NK~D~~~~ 140 (691)
T PRK12739 133 NKMDRIGA 140 (691)
T ss_pred ECCCCCCC
Confidence 99999853
No 233
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.24 E-value=4.7e-11 Score=132.10 Aligned_cols=165 Identities=25% Similarity=0.299 Sum_probs=94.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~~ 277 (545)
.++|+|..|+|||||+++|+...- . ++.... . ...+.....+...|.|+.... .+.|... .+..
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g--~-i~~~~~--~-~~~~D~~~~ErerGiTi~~~~v~~~~~~~--~g~~------- 69 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTG--A-ISEREM--R-EQVLDSMDLERERGITIKAQAVRLNYKAK--DGET------- 69 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--C-Cccccc--c-ccccCCChHHHhcCCCeeeeEEEEEEEcC--CCCE-------
Confidence 589999999999999999998652 2 221100 0 011111112234565553211 1111100 0000
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..++||||||... |...+..++..+|.+|+++|++. +...+....+..+...+.|+++|+
T Consensus 70 --------~~l~liDTPG~~d-----------F~~~v~~~l~~aD~aILVvDat~-g~~~qt~~~~~~~~~~~ipiIiVi 129 (595)
T TIGR01393 70 --------YVLNLIDTPGHVD-----------FSYEVSRSLAACEGALLLVDAAQ-GIEAQTLANVYLALENDLEIIPVI 129 (595)
T ss_pred --------EEEEEEECCCcHH-----------HHHHHHHHHHhCCEEEEEecCCC-CCCHhHHHHHHHHHHcCCCEEEEE
Confidence 2689999999953 22234556789999999999987 444444444444445678999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+.+.. ..++...+...++ ....++ +++||++|.|+++
T Consensus 130 NKiDl~~~~-~~~~~~el~~~lg--~~~~~v--i~vSAktG~GI~~ 170 (595)
T TIGR01393 130 NKIDLPSAD-PERVKKEIEEVIG--LDASEA--ILASAKTGIGIEE 170 (595)
T ss_pred ECcCCCccC-HHHHHHHHHHHhC--CCcceE--EEeeccCCCCHHH
Confidence 999986421 1122222211112 111234 8999999999875
No 234
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.24 E-value=5.5e-11 Score=127.31 Aligned_cols=169 Identities=21% Similarity=0.242 Sum_probs=95.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCC----------CC--cccceEEEEeCCCccccCCceeEeec-CCCCCCcc
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP----------EP--TTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLT 265 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~----------~p--~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~ 265 (545)
.|+++|+.++|||||+++|+...- .+... .- .......++.....+...|+|+.... .+.+.+
T Consensus 9 ~v~i~Ghvd~GKSTL~~~ll~~~g--~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~-- 84 (426)
T TIGR00483 9 NVAFIGHVDHGKSTTVGHLLYKCG--AIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK-- 84 (426)
T ss_pred EEEEEeccCCcHHHHHHHHHHHhC--CcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC--
Confidence 799999999999999999996431 11100 00 01111223333344556777774332 111111
Q ss_pred cccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCC--ccHHHHHHH
Q 009050 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD--ISDEFKRVI 343 (545)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~--~~~~~~~~l 343 (545)
..+.|+||||... |.......+..+|++++++|++... ...+..+.+
T Consensus 85 --------------------~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~ 133 (426)
T TIGR00483 85 --------------------YEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA 133 (426)
T ss_pred --------------------eEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH
Confidence 2789999999621 1112333468899999999998731 222222222
Q ss_pred HHHhcCC-CeEEEEecCCCCCC--HHHHHHHHHHHHHHhcccccC--CccEEEEeeccCCCccCc
Q 009050 344 TSLRGHD-DKIRVVLNKADQVD--TQQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 344 ~~L~~~~-~~iiiVlNK~D~~~--~~~l~~v~~~l~~~l~k~~~~--~~v~~v~iSa~~~~~~~~ 403 (545)
..+...+ .++++|+||+|+.+ .+.+......+...+ +..+. ..+..+++||++|.|+.+
T Consensus 134 ~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~-~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 134 FLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLI-KKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHH-HHcCCCcccceEEEeeccccccccc
Confidence 2222233 47899999999974 333333322221111 11111 234458999999999987
No 235
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.24 E-value=6.3e-11 Score=121.14 Aligned_cols=110 Identities=20% Similarity=0.205 Sum_probs=60.4
Q ss_pred EEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhc
Q 009050 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQ 279 (545)
Q Consensus 200 V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~ 279 (545)
|+|+|.||||||||+|+|++.. ..+++.|.||.........-....|...+.... .+..|....+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~---~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~-~~~~~~~~~~~---------- 66 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD---VEIANYPFTTIDPNVGVGYVRVECPCKELGVSC-NPRYGKCIDGK---------- 66 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC---CcccCCCCccccceeEEEEEecCCCchhhhhhh-cccccccccCc----------
Confidence 5899999999999999999987 678888887755432110000000000000000 00000000000
Q ss_pred CchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCC
Q 009050 280 MPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPH 331 (545)
Q Consensus 280 ~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~ 331 (545)
--..+.++||||+..|..+....+- .....++++|++++|+|+.
T Consensus 67 ----~~v~i~l~D~aGlv~ga~~~~glg~----~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 67 ----RYVPVELIDVAGLVPGAHEGKGLGN----KFLDDLRDADALIHVVDAS 110 (318)
T ss_pred ----CcceEEEEECCCCCCCccchhhHHH----HHHHHHHHCCEEEEEEeCC
Confidence 0025899999999764322111000 1123489999999999986
No 236
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=8.7e-12 Score=121.47 Aligned_cols=164 Identities=20% Similarity=0.210 Sum_probs=95.7
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCC-c----ccceEEEEeCCCccc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEP-T----TDRFVVVMSGVDDRS 247 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p-~----t~r~~i~~~~~~~~~ 247 (545)
++.|+. ..++++++|...+ +++|+|+||||||||++.|+|...| |.+. .... . ..+..+.+.+++...
T Consensus 7 ~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 84 (220)
T cd03265 7 VKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSV 84 (220)
T ss_pred EEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccc
Confidence 445665 3488999988876 9999999999999999999998743 1110 0000 0 001223344443332
Q ss_pred cCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCC
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aD 322 (545)
.++.++..+..+. ....+ ...........++++.+.+- | .|+.+| |++|++. ++++++.+|+
T Consensus 85 ~~~~tv~~~l~~~---~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~-------la~al~~~p~ 151 (220)
T cd03265 85 DDELTGWENLYIH---ARLYG---VPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLE-------IARSLVHRPE 151 (220)
T ss_pred cccCcHHHHHHHH---HHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHH-------HHHHHhcCCC
Confidence 2222220000000 00000 00011112234455555553 3 467788 8999988 8999999999
Q ss_pred EEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecC
Q 009050 323 LILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNK 359 (545)
Q Consensus 323 liLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK 359 (545)
++|+ .+|+.. ...+.+++..+... +..++++.|.
T Consensus 152 llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tvi~~tH~ 191 (220)
T cd03265 152 VLFLDEPTIGLDPQT---RAHVWEYIEKLKEEFGMTILLTTHY 191 (220)
T ss_pred EEEEcCCccCCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9988 566643 45667777777654 7788888884
No 237
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.23 E-value=1.5e-11 Score=119.50 Aligned_cols=166 Identities=26% Similarity=0.362 Sum_probs=96.1
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc---------cceEEEEeCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT---------DRFVVVMSGV 243 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t---------~r~~i~~~~~ 243 (545)
++.|+.....++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+-+ .+..+.+.++
T Consensus 8 ~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q 87 (216)
T TIGR00960 8 SKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQ 87 (216)
T ss_pred EEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEec
Confidence 445643112488999988876 9999999999999999999998743 110 0000000 0112333333
Q ss_pred CccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 244 DDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 244 ~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
+....+..++..+..+.. ...+ ...........++++.+.+.+ .|+.+| |++||+. ++++++
T Consensus 88 ~~~~~~~~tv~e~l~~~~---~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------laral~ 154 (216)
T TIGR00960 88 DHRLLSDRTVYDNVAFPL---RIIG---VPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVA-------IARAIV 154 (216)
T ss_pred CccccccccHHHHHHHHH---HhcC---CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HHHHHh
Confidence 332222222210000000 0000 000011122344555555533 567788 8999998 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
.+|+++|+ .+|+.. ...+.+++..+++.+..++++.|.
T Consensus 155 ~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~vsH~ 197 (216)
T TIGR00960 155 HKPPLLLADEPTGNLDPEL---SRDIMRLFEEFNRRGTTVLVATHD 197 (216)
T ss_pred cCCCEEEEeCCCCcCCHHH---HHHHHHHHHHHHHCCCEEEEEeCC
Confidence 99999998 566543 466777788776667788888884
No 238
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1.1e-11 Score=128.89 Aligned_cols=164 Identities=22% Similarity=0.297 Sum_probs=103.9
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CC------CCCCCCcccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GA------HIGPEPTTDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~------~v~~~p~t~r~~i~~~~~~~~ 246 (545)
+++.|++. .++++++|+..+ +++|+|++|||||||++.|+|...| |. .+...| ..+..+.+.+++..
T Consensus 12 l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~vfQ~~~ 88 (351)
T PRK11432 12 ITKRFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-IQQRDICMVFQSYA 88 (351)
T ss_pred EEEEECCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEeCCcc
Confidence 44466653 378999888876 9999999999999999999999864 11 111111 12234556666655
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
..|+.|+..+..+.+. ..+ ..+.+......++++.+.+. | .|..+| |++||++ +||+++.+|
T Consensus 89 lfp~~tv~eNi~~~l~---~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVa-------LARaL~~~P 155 (351)
T PRK11432 89 LFPHMSLGENVGYGLK---MLG---VPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVA-------LARALILKP 155 (351)
T ss_pred cCCCCCHHHHHHHHHh---HcC---CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHHcCC
Confidence 5555544211111110 000 01112223344455555553 3 577888 7999999 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
+++|+ .+|+. ...++...++.+.+ .+.++++|.|.
T Consensus 156 ~lLLLDEP~s~LD~~---~r~~l~~~l~~l~~~~g~tii~vTHd 196 (351)
T PRK11432 156 KVLLFDEPLSNLDAN---LRRSMREKIRELQQQFNITSLYVTHD 196 (351)
T ss_pred CEEEEcCCcccCCHH---HHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 99998 56664 35667777777755 47888888884
No 239
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.23 E-value=1.1e-09 Score=112.92 Aligned_cols=168 Identities=20% Similarity=0.294 Sum_probs=89.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccC--CC-CCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSY--PG-AHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~--p~-~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
.|||+|.+|+|||||||+|-|... +| +.+|...+|...+-.
T Consensus 37 ~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y------------------------------------ 80 (376)
T PF05049_consen 37 NIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY------------------------------------ 80 (376)
T ss_dssp EEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC------------------------------------
Confidence 599999999999999999987543 22 333332223222221
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
+++-.-.+++||.||+.+.. ..... | +-..-..+.|++|++.+.. +++....+.+.+++.++++.+
T Consensus 81 -----~~p~~pnv~lWDlPG~gt~~-f~~~~---Y--l~~~~~~~yD~fiii~s~r---f~~ndv~La~~i~~~gK~fyf 146 (376)
T PF05049_consen 81 -----PHPKFPNVTLWDLPGIGTPN-FPPEE---Y--LKEVKFYRYDFFIIISSER---FTENDVQLAKEIQRMGKKFYF 146 (376)
T ss_dssp -----E-SS-TTEEEEEE--GGGSS---HHH---H--HHHTTGGG-SEEEEEESSS-----HHHHHHHHHHHHTT-EEEE
T ss_pred -----CCCCCCCCeEEeCCCCCCCC-CCHHH---H--HHHccccccCEEEEEeCCC---CchhhHHHHHHHHHcCCcEEE
Confidence 11111379999999996521 11111 1 1112257889988887754 577888899999999999999
Q ss_pred EecCCCC-C-----------CHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCcccCCCccHHhhHHHHHHHH
Q 009050 356 VLNKADQ-V-----------DTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNESAFGPLGKELFEKEQDDLL 422 (545)
Q Consensus 356 VlNK~D~-~-----------~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~~~~~~~~~~~f~~e~e~ll 422 (545)
|-+|+|. + +.+++ .++.......+.+. +..++..|.||++.-..++ |+.-++.+.
T Consensus 147 VRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~-gv~~P~VFLVS~~dl~~yD-----------Fp~L~~tL~ 214 (376)
T PF05049_consen 147 VRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA-GVSEPQVFLVSSFDLSKYD-----------FPKLEETLE 214 (376)
T ss_dssp EE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT-T-SS--EEEB-TTTTTSTT-----------HHHHHHHHH
T ss_pred EEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc-CCCcCceEEEeCCCcccCC-----------hHHHHHHHH
Confidence 9999995 1 11222 23333334445443 2233444789988644433 555555555
Q ss_pred HHHhhc
Q 009050 423 SDLKDI 428 (545)
Q Consensus 423 ~~l~~~ 428 (545)
.+|...
T Consensus 215 ~dLp~~ 220 (376)
T PF05049_consen 215 KDLPAH 220 (376)
T ss_dssp HHS-GG
T ss_pred HHhHHH
Confidence 554433
No 240
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.23 E-value=1e-11 Score=129.61 Aligned_cols=165 Identities=17% Similarity=0.233 Sum_probs=104.6
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCC----------cccceEEEEeCCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP----------TTDRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p----------~t~r~~i~~~~~~ 244 (545)
+++.|+.. .++++++|+..+ +++|+|++|||||||+++|+|...|.... +.. ...+..+.+.+++
T Consensus 11 l~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~-G~i~~~g~~~~~~~~~~r~ig~vfQ~ 87 (362)
T TIGR03258 11 LRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT-GRIAIADRDLTHAPPHKRGLALLFQN 87 (362)
T ss_pred EEEEECCe--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCC-EEEEECCEECCCCCHHHCCEEEEECC
Confidence 34466653 489999988766 99999999999999999999988542200 110 0012234455555
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
....+..|+..+..+.+. ..+ ..+.+......++++.+.|-+ .|+.+| |++||++ ++++++.
T Consensus 88 ~~l~p~~tv~enl~~~l~---~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRva-------LARAL~~ 154 (362)
T TIGR03258 88 YALFPHLKVEDNVAFGLR---AQK---MPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIA-------IARAIAI 154 (362)
T ss_pred cccCCCCcHHHHHHHHHH---HcC---CCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHH-------HHHHHhc
Confidence 444444443211111100 000 011122234455666666643 678888 8999999 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC--CCeEEEEecCC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGH--DDKIRVVLNKA 360 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~--~~~iiiVlNK~ 360 (545)
+|+++|+ .+|+.. ..++...+..+.+. +.++++|.|..
T Consensus 155 ~P~llLLDEP~s~LD~~~---r~~l~~~l~~l~~~~~g~til~vTHd~ 199 (362)
T TIGR03258 155 EPDVLLLDEPLSALDANI---RANMREEIAALHEELPELTILCVTHDQ 199 (362)
T ss_pred CCCEEEEcCccccCCHHH---HHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 9999999 666643 56777888877664 67889888843
No 241
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.23 E-value=1.1e-10 Score=113.76 Aligned_cols=114 Identities=19% Similarity=0.287 Sum_probs=71.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|.+|||||||++++++..++. ...|+....... .+ .+.+ ..
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f~~---~y~pTi~~~~~~------------~~------~~~~-----~~-------- 48 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAYPG---SYVPTVFENYTA------------SF------EIDK-----RR-------- 48 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---ccCCccccceEE------------EE------EECC-----EE--------
Confidence 58999999999999999999877532 122222110000 00 0001 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~iii 355 (545)
-.+.||||+|... |..+...+...+|++|+++|.++....+... .|...+.. .+.|+++
T Consensus 49 -------v~L~iwDt~G~e~-----------~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiL 110 (222)
T cd04173 49 -------IELNMWDTSGSSY-----------YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVL 110 (222)
T ss_pred -------EEEEEEeCCCcHH-----------HHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEE
Confidence 2688999999732 1223345679999999999998743333332 23333332 3579999
Q ss_pred EecCCCCCC
Q 009050 356 VLNKADQVD 364 (545)
Q Consensus 356 VlNK~D~~~ 364 (545)
|.||+|+.+
T Consensus 111 VgnK~DL~~ 119 (222)
T cd04173 111 VGCKLDMRT 119 (222)
T ss_pred EEECccccc
Confidence 999999865
No 242
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=1.2e-11 Score=121.76 Aligned_cols=165 Identities=24% Similarity=0.282 Sum_probs=96.8
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCc---------ccceEEEEeCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPT---------TDRFVVVMSGV 243 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~---------t~r~~i~~~~~ 243 (545)
++.|+. ..++++++|+..+ +++|+|+||||||||+|.|+|...| |.+. .+.+. ..+..+.+.++
T Consensus 7 ~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q 84 (235)
T cd03261 7 TKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQ 84 (235)
T ss_pred EEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEcc
Confidence 445654 3489999988776 9999999999999999999998754 1110 01000 01122344444
Q ss_pred CccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 244 DDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 244 ~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
.....++.|+..+..+... ... ............++++.+.+-+ .|+.+| |++|++. ++++++
T Consensus 85 ~~~~~~~~tv~~~l~~~~~---~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------ia~al~ 152 (235)
T cd03261 85 SGALFDSLTVFENVAFPLR---EHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVA-------LARALA 152 (235)
T ss_pred CcccCCCCcHHHHHHHHHh---hcc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHh
Confidence 4333333222111000000 000 0000011122334455555432 567778 8999998 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
.+|+++|+ .+|+.. ...+.+++..+.. .+..++++.|.
T Consensus 153 ~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tvi~vsH~ 196 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIA---SGVIDDLIRSLKKELGLTSIMVTHD 196 (235)
T ss_pred cCCCEEEecCCcccCCHHH---HHHHHHHHHHHHHhcCcEEEEEecC
Confidence 99999998 566643 5667778887765 47788888884
No 243
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.23 E-value=1.2e-11 Score=126.40 Aligned_cols=165 Identities=26% Similarity=0.311 Sum_probs=98.6
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC-----cccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP-----TTDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p-----~t~r~~i~~~~~~~~ 246 (545)
+++.|++ ..++++++|...+ +++|+|+||||||||++.|+|...| |.+ +.+.+ ...+..+.+.+++..
T Consensus 10 l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~ 87 (303)
T TIGR01288 10 VSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDN 87 (303)
T ss_pred EEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEecccc
Confidence 4446665 3489999999877 9999999999999999999998754 111 00100 001223444444433
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
..++.|+.....+ +... .+ ............+++.+.+-+ .++.+| |++||+. +|++++.+|
T Consensus 88 ~~~~~tv~e~l~~-~~~~--~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~-------la~al~~~p 154 (303)
T TIGR01288 88 LDPEFTVRENLLV-FGRY--FG---MSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLT-------LARALINDP 154 (303)
T ss_pred CCcCCcHHHHHHH-HHHH--cC---CCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHH-------HHHHHhcCC
Confidence 3333222100000 0000 00 000011112234455555432 456777 8999998 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+++|+ .+|+.. ...+.+++..+...+..++++.|.
T Consensus 155 ~lllLDEPt~gLD~~~---~~~l~~~l~~~~~~g~til~~sH~ 194 (303)
T TIGR01288 155 QLLILDEPTTGLDPHA---RHLIWERLRSLLARGKTILLTTHF 194 (303)
T ss_pred CEEEEeCCCcCCCHHH---HHHHHHHHHHHHhCCCEEEEECCC
Confidence 99998 666653 567778888887667788888874
No 244
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.22 E-value=9.4e-12 Score=129.56 Aligned_cols=165 Identities=24% Similarity=0.323 Sum_probs=105.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--C------CCCCCCCcccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--G------AHIGPEPTTDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~------~~v~~~p~t~r~~i~~~~~~~~ 246 (545)
+++.|+.+ .++++++|+..+ +++|+|++|||||||++.|+|...| | ..+...+. .+..+.+.+++..
T Consensus 10 l~~~~~~~--~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~-~~r~ig~v~Q~~~ 86 (353)
T TIGR03265 10 IRKRFGAF--TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP-QKRDYGIVFQSYA 86 (353)
T ss_pred EEEEeCCe--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHCCEEEEeCCcc
Confidence 44466653 378899888765 9999999999999999999999864 1 11111111 1234556666665
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
..|..|+..+..+... ..+ ..+.+......++++.+.|-+ .|..+| |++||++ ++++++.+|
T Consensus 87 lfp~~tv~eNi~~~~~---~~~---~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRva-------LARaL~~~P 153 (353)
T TIGR03265 87 LFPNLTVADNIAYGLK---NRG---MGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVA-------LARALATSP 153 (353)
T ss_pred cCCCCcHHHHHHHHHH---hcC---CCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHH-------HHHHHhcCC
Confidence 5555544211111110 000 011122234455666666543 677788 7999999 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
+++|+ .+|+.. ..++...++.+.+ .+.++++|.+..
T Consensus 154 ~llLLDEP~s~LD~~~---r~~l~~~L~~l~~~~~~tvi~vTHd~ 195 (353)
T TIGR03265 154 GLLLLDEPLSALDARV---REHLRTEIRQLQRRLGVTTIMVTHDQ 195 (353)
T ss_pred CEEEEcCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 99999 566642 5667777777654 478899988843
No 245
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.22 E-value=5.6e-12 Score=128.82 Aligned_cols=158 Identities=22% Similarity=0.266 Sum_probs=95.5
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC-----cccceEEEEeCCCccccCCceeEee
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP-----TTDRFVVVMSGVDDRSIPGNTVAVQ 256 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p-----~t~r~~i~~~~~~~~~~~g~t~~~~ 256 (545)
.++++++|+..+ +++|+|+||||||||+++|+|...| |.+ +.+.+ ...+..+.+.++.....++.|+...
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 488999988876 9999999999999999999998754 110 00100 0011223344443333333222100
Q ss_pred cCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----
Q 009050 257 ADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL----- 326 (545)
Q Consensus 257 ~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl----- 326 (545)
..+. ..+ .+ ...........++++.+.+. | .++.+| |++||+. +|++++.+|+++|+
T Consensus 87 l~~~-~~~--~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 87 LEMM-GRL--YG---LPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLD-------IAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHH-HHH--cC---CCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCCCc
Confidence 0000 000 00 00011122344566666654 3 456777 8999998 89999999999998
Q ss_pred EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 327 LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 327 vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
.+|+.. ...+.+++..+++.+..++++.|..
T Consensus 154 gLD~~~---~~~l~~~l~~~~~~g~tvi~~sH~~ 184 (302)
T TIGR01188 154 GLDPRT---RRAIWDYIRALKEEGVTILLTTHYM 184 (302)
T ss_pred CCCHHH---HHHHHHHHHHHHhCCCEEEEECCCH
Confidence 677653 5677788888876678888888843
No 246
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.22 E-value=9.8e-12 Score=119.24 Aligned_cols=167 Identities=25% Similarity=0.317 Sum_probs=108.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--------CCCCCCC-CcccceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--------GAHIGPE-PTTDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--------~~~v~~~-p~t~r~~i~~~~~~~ 245 (545)
+++.|++ ..+++++++.... +++++|++||||||+++++.+.--| |..++.. +..-|..+.|.-|..
T Consensus 7 vsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqi 84 (309)
T COG1125 7 VSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQI 84 (309)
T ss_pred eehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhc
Confidence 4446775 4489999998877 9999999999999999999887743 1111111 122244455555555
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee-----c-CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV-----D-TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li-----D-TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
...|..|+..+-..- ..+.. +.+.....+..++|..+.+- | .|-.+| |++||+. ++|+++
T Consensus 85 gLFPh~Tv~eNIa~V-P~L~~-----w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVG-------v~RALA 151 (309)
T COG1125 85 GLFPHLTVAENIATV-PKLLG-----WDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVG-------VARALA 151 (309)
T ss_pred ccCCCccHHHHHHhh-hhhcC-----CCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHH-------HHHHHh
Confidence 555555542211000 00000 12334556667777766663 2 788888 7999998 999999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHh-cCCCeEEEEecCCC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNKAD 361 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~-~~~~~iiiVlNK~D 361 (545)
.+|+++|+ .+|+-. .....+.+..+. +.++++++|.|.+|
T Consensus 152 adP~ilLMDEPFgALDpI~---R~~lQ~e~~~lq~~l~kTivfVTHDid 197 (309)
T COG1125 152 ADPPILLMDEPFGALDPIT---RKQLQEEIKELQKELGKTIVFVTHDID 197 (309)
T ss_pred cCCCeEeecCCccccChhh---HHHHHHHHHHHHHHhCCEEEEEecCHH
Confidence 99999999 677754 345555555554 45789999999766
No 247
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.21 E-value=3.3e-11 Score=118.34 Aligned_cols=164 Identities=21% Similarity=0.298 Sum_probs=96.5
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc------c-cceEEEEeCCCc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT------T-DRFVVVMSGVDD 245 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~------t-~r~~i~~~~~~~ 245 (545)
++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+. . .+..+.+.++..
T Consensus 7 ~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (232)
T cd03218 7 SKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEA 84 (232)
T ss_pred EEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCc
Confidence 445654 3488999988776 9999999999999999999998753 110 011110 0 011233444433
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
...++.++..+...... . .+ ...........++++.+.+- + .++.+| |++|++. ++++++.+
T Consensus 85 ~~~~~~tv~~~l~~~~~-~--~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~~ 151 (232)
T cd03218 85 SIFRKLTVEENILAVLE-I--RG---LSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVE-------IARALATN 151 (232)
T ss_pred cccccCcHHHHHHHHHH-h--cC---CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HHHHHhcC
Confidence 33333222110000000 0 00 00001112233455555553 2 456677 8999988 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
|+++|+ .+|+.. ...+.++++.+.+.+..++++.|.
T Consensus 152 p~llllDEPt~~LD~~~---~~~~~~~l~~~~~~~~tii~~sH~ 192 (232)
T cd03218 152 PKFLLLDEPFAGVDPIA---VQDIQKIIKILKDRGIGVLITDHN 192 (232)
T ss_pred CCEEEecCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEeCC
Confidence 999998 666653 566778888877667788888883
No 248
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.21 E-value=2.1e-11 Score=115.88 Aligned_cols=169 Identities=22% Similarity=0.280 Sum_probs=99.4
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEe
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAV 255 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~ 255 (545)
...|+..+ ++++++|.... +|+|+|+||||||||+++|+|...+ .+....-....+.....+.....|.+.+.
T Consensus 10 ~~~YG~~~--~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~---~~G~I~~~G~dit~~p~~~r~r~Gi~~VP 84 (237)
T COG0410 10 SAGYGKIQ--ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP---RSGRIIFDGEDITGLPPHERARLGIAYVP 84 (237)
T ss_pred eeccccee--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEECCeecCCCCHHHHHhCCeEeCc
Confidence 34678744 99999999887 9999999999999999999998853 12211111111111111222233444444
Q ss_pred ecCCCCCCcccccccchhhhh-----hhcC-chhhccCce-ee----cCCCCCC-hhhhhhhhccChHHHHHHHhcCCCE
Q 009050 256 QADMPFSGLTTFGTAFLSKFE-----CSQM-PHSLLEHIT-LV----DTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (545)
Q Consensus 256 ~~~~~~~gl~~~~~~~~~~~~-----~~~~-~~~lL~~v~-li----DTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDl 323 (545)
+...-|..++..+|..+.... .... +.++++-+- +- -..|.+| ||+|.++ ++|+++.+|.+
T Consensus 85 egR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLA-------iaRALm~~Pkl 157 (237)
T COG0410 85 EGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLA-------IARALMSRPKL 157 (237)
T ss_pred ccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHH-------HHHHHhcCCCE
Confidence 444444444444443221110 0000 111111111 11 1578999 7899888 89999999998
Q ss_pred EEEEeCCCCCC----ccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 324 ILLLFDPHKLD----ISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 324 iLlvlD~~~~~----~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
+++ |-...+ +..++.+.++.+++. +..|++|-..+
T Consensus 158 LLL--DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~ 197 (237)
T COG0410 158 LLL--DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA 197 (237)
T ss_pred EEe--cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH
Confidence 776 433323 346677888888855 56888776543
No 249
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.21 E-value=1.6e-10 Score=109.51 Aligned_cols=149 Identities=19% Similarity=0.244 Sum_probs=83.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|++|+|||||+|+++...++. ...++. ...... ...+.+.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~---~~~~t~-~~~~~~-----------------~~~~~~~-------------- 47 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE---EYHPTV-FENYVT-----------------DCRVDGK-------------- 47 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc---ccCCcc-cceEEE-----------------EEEECCE--------------
Confidence 68999999999999999998655421 111211 111100 0000010
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~iii 355 (545)
-..+.++||||...-. . .....+.++|++++++|.+.....++.. .++..+.. ...|+++
T Consensus 48 ------~~~l~i~Dt~g~~~~~--~---------~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piil 110 (187)
T cd04129 48 ------PVQLALWDTAGQEEYE--R---------LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVIL 110 (187)
T ss_pred ------EEEEEEEECCCChhcc--c---------cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 0157899999973210 0 1122458899999999987633333332 35555543 2579999
Q ss_pred EecCCCCCCHH-H--------HHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQ-Q--------LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~-~--------l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.+.. . ........ .+.+..+.... +.+||++|.|+++
T Consensus 111 vgnK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~e~Sa~~~~~v~~ 163 (187)
T cd04129 111 VGLKKDLRQDAVAKEEYRTQRFVPIQQGK--RVAKEIGAKKY--MECSALTGEGVDD 163 (187)
T ss_pred EeeChhhhhCcccccccccCCcCCHHHHH--HHHHHhCCcEE--EEccCCCCCCHHH
Confidence 99999985311 0 00000000 11122222233 7899999999885
No 250
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.20 E-value=2.3e-11 Score=109.99 Aligned_cols=154 Identities=22% Similarity=0.305 Sum_probs=102.0
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCC--------CCCCCC-----CcccceEEEEeCCCccccCCc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPG--------AHIGPE-----PTTDRFVVVMSGVDDRSIPGN 251 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~--------~~v~~~-----p~t~r~~i~~~~~~~~~~~g~ 251 (545)
.+++++++.+.+ .|+|||++|+|||||+-.|.|.+.|. ...... .......+.+.+|.+..+|..
T Consensus 24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l 103 (228)
T COG4181 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL 103 (228)
T ss_pred eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc
Confidence 478888888877 99999999999999999999999751 111110 111234566777777777776
Q ss_pred eeEeecCCC--CCCcccccccchhhhhhhcCchhhccCceee----cCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEE
Q 009050 252 TVAVQADMP--FSGLTTFGTAFLSKFECSQMPHSLLEHITLV----DTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (545)
Q Consensus 252 t~~~~~~~~--~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li----DTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDli 324 (545)
+...+...| +.|-.. -.....+.++|+.+.+- ..|+.+| ||+||++ +||+|+.+||++
T Consensus 104 tAlENV~lPleL~ge~~--------~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVA-------iARAfa~~P~vL 168 (228)
T COG4181 104 TALENVALPLELRGESS--------ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVA-------LARAFAGRPDVL 168 (228)
T ss_pred hhhhhccchhhhcCCcc--------ccHHHHHHHHHHHhCcccccccCccccCchHHHHHH-------HHHHhcCCCCEE
Confidence 654333333 222100 01122344566677664 4899999 7999999 899999999988
Q ss_pred EE-----EeCCCCCCccHHHHHHHHHH-hcCCCeEEEEec
Q 009050 325 LL-----LFDPHKLDISDEFKRVITSL-RGHDDKIRVVLN 358 (545)
Q Consensus 325 Ll-----vlD~~~~~~~~~~~~~l~~L-~~~~~~iiiVlN 358 (545)
+. -+|... .+.+.+++-.+ ++.+..+++|.+
T Consensus 169 fADEPTGNLD~~T---g~~iaDLlF~lnre~G~TlVlVTH 205 (228)
T COG4181 169 FADEPTGNLDRAT---GDKIADLLFALNRERGTTLVLVTH 205 (228)
T ss_pred eccCCCCCcchhH---HHHHHHHHHHHhhhcCceEEEEeC
Confidence 76 344332 34555555544 456788888888
No 251
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.20 E-value=1.9e-11 Score=118.91 Aligned_cols=156 Identities=22% Similarity=0.310 Sum_probs=94.5
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCcc----------cceEEEEeCCCccccCCc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPTT----------DRFVVVMSGVDDRSIPGN 251 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~t----------~r~~i~~~~~~~~~~~g~ 251 (545)
.++++++|+..+ +++|+|+||||||||++.|+|...| |.+. ...+.+ .+..+.+.++.....++.
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL 97 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC
Confidence 489999988876 9999999999999999999998753 1110 010000 012334444433333332
Q ss_pred eeEeecCCC--CCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEE
Q 009050 252 TVAVQADMP--FSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (545)
Q Consensus 252 t~~~~~~~~--~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDli 324 (545)
++..+..+. +.+. ..........++++.+.+. | .|+.+| |++|++. ++++++.+|+++
T Consensus 98 tv~e~l~~~~~~~~~--------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~ll 162 (218)
T cd03255 98 TALENVELPLLLAGV--------PKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVA-------IARALANDPKII 162 (218)
T ss_pred cHHHHHHHHHhhcCC--------CHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHH-------HHHHHccCCCEE
Confidence 221100000 0000 0001112234455555553 3 456777 8999998 899999999999
Q ss_pred EE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 325 LL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 325 Ll-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
|+ .+|+.. ...+.+++..+.. .+..++++.|..
T Consensus 163 lLDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tii~~sH~~ 201 (218)
T cd03255 163 LADEPTGNLDSET---GKEVMELLRELNKEAGTTIVVVTHDP 201 (218)
T ss_pred EEcCCcccCCHHH---HHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 99 667653 5677788888765 477888888843
No 252
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.20 E-value=2.4e-11 Score=126.44 Aligned_cols=168 Identities=21% Similarity=0.214 Sum_probs=104.3
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC----cccceEEEEeCCCcccc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP----TTDRFVVVMSGVDDRSI 248 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p----~t~r~~i~~~~~~~~~~ 248 (545)
++.|+.. .++++++|+..+ +++|+|++|||||||++.|+|...| |.+ +..+. ...+..+.+.+++....
T Consensus 9 ~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~ 86 (353)
T PRK10851 9 KKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALF 86 (353)
T ss_pred EEEeCCe--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccC
Confidence 4466653 488999988876 9999999999999999999998754 111 00100 01123455666666656
Q ss_pred CCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCE
Q 009050 249 PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (545)
Q Consensus 249 ~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDl 323 (545)
+..++..+..+........ ....+.+......++++.+.+-+ .|..+| |++||++ ++++++.+|++
T Consensus 87 p~~tv~eni~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRva-------lArAL~~~P~l 157 (353)
T PRK10851 87 RHMTVFDNIAFGLTVLPRR--ERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVA-------LARALAVEPQI 157 (353)
T ss_pred CCCcHHHHHHhhhhhcccc--cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------HHHHHhcCCCE
Confidence 5555422211111000000 00011112233455666666643 567778 8999998 89999999999
Q ss_pred EEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecC
Q 009050 324 ILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNK 359 (545)
Q Consensus 324 iLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK 359 (545)
+|+ .+|+.. ..++.+++..+.+. +.++++|.+.
T Consensus 158 lLLDEP~s~LD~~~---r~~l~~~L~~l~~~~g~tii~vTHd 196 (353)
T PRK10851 158 LLLDEPFGALDAQV---RKELRRWLRQLHEELKFTSVFVTHD 196 (353)
T ss_pred EEEeCCCccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 998 566643 56677788777654 7788888884
No 253
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.20 E-value=2.1e-11 Score=127.64 Aligned_cols=164 Identities=20% Similarity=0.248 Sum_probs=103.6
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--C------CCCCCCCcccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--G------AHIGPEPTTDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~------~~v~~~p~t~r~~i~~~~~~~~ 246 (545)
+++.|+.. .++++++|+..+ +++|+|++|||||||+++|+|...| | ..+...+ ..+..+.+.+++..
T Consensus 20 l~~~~~~~--~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~vfQ~~~ 96 (375)
T PRK09452 20 ISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AENRHVNTVFQSYA 96 (375)
T ss_pred EEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HHHCCEEEEecCcc
Confidence 44466653 378888888765 9999999999999999999999864 1 1111111 11234555666655
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
..|..++..+..+.+ ...+ ..+.+......++++.+.+.+ .|..+| |++||++ +|++++.+|
T Consensus 97 lfp~ltv~eNi~~~l---~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVa-------LARaL~~~P 163 (375)
T PRK09452 97 LFPHMTVFENVAFGL---RMQK---TPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVA-------IARAVVNKP 163 (375)
T ss_pred cCCCCCHHHHHHHHH---hhcC---CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------HHHHHhcCC
Confidence 555554422111111 0000 011111223345555555544 677888 7999999 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
+++|+ .+|+.. ...+...++.+.+ .+.++++|.|.
T Consensus 164 ~llLLDEP~s~LD~~~---r~~l~~~L~~l~~~~g~tiI~vTHd 204 (375)
T PRK09452 164 KVLLLDESLSALDYKL---RKQMQNELKALQRKLGITFVFVTHD 204 (375)
T ss_pred CEEEEeCCCCcCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 99998 566642 5667777777755 47889998884
No 254
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.20 E-value=1.6e-10 Score=114.38 Aligned_cols=125 Identities=19% Similarity=0.246 Sum_probs=76.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+|+|++|||||||+|+|+|... ..++..+.+|.....+.. .+.|
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~--~~v~~~~~~T~~~~~~~~-----------------~~~g------------- 78 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERK--AATSAFQSETLRVREVSG-----------------TVDG------------- 78 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC--cccCCCCCceEEEEEEEE-----------------EECC-------------
Confidence 34799999999999999999999986 556554333332221100 0111
Q ss_pred hhcCchhhccCceeecCCCCCChhh-hhhhhccChHHHHHHHh--cCCCEEEEEeCCCCCCccHHHHHHHHHHhc-CC--
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEK-QRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRG-HD-- 350 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgek-q~v~~~~~~~~ia~~~~--~~aDliLlvlD~~~~~~~~~~~~~l~~L~~-~~-- 350 (545)
..+.++||||+.+... ....+.. ......++ ..+|+++++...+.......+..+++.+.+ .+
T Consensus 79 ---------~~i~vIDTPGl~~~~~~~~~~~~~--~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~ 147 (249)
T cd01853 79 ---------FKLNIIDTPGLLESVMDQRVNRKI--LSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS 147 (249)
T ss_pred ---------eEEEEEECCCcCcchhhHHHHHHH--HHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh
Confidence 2689999999986421 1111110 11122233 367888888544432345555667776654 22
Q ss_pred --CeEEEEecCCCCCC
Q 009050 351 --DKIRVVLNKADQVD 364 (545)
Q Consensus 351 --~~iiiVlNK~D~~~ 364 (545)
..+++|+||+|...
T Consensus 148 i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 148 IWRNAIVVLTHAASSP 163 (249)
T ss_pred hHhCEEEEEeCCccCC
Confidence 37899999999874
No 255
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.20 E-value=7e-10 Score=107.97 Aligned_cols=120 Identities=20% Similarity=0.348 Sum_probs=77.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|.+|||||||+|+|.+.+. +.++..+.+++.... .....+
T Consensus 41 nvLi~G~TG~GKSSliNALF~~~~--~~v~~vg~~t~~~~~-----------------------~~~~~~---------- 85 (296)
T COG3596 41 NVLLMGATGAGKSSLINALFQGEV--KEVSKVGVGTDITTR-----------------------LRLSYD---------- 85 (296)
T ss_pred eEEEecCCCCcHHHHHHHHHhccC--ceeeecccCCCchhh-----------------------HHhhcc----------
Confidence 677999999999999999997665 555543333222210 000000
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh--cCCCeEEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR--GHDDKIRVV 356 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~--~~~~~iiiV 356 (545)
++.++||||||+..|.+.-.. +....+..+.+.|++|+++|+...+++- +.++++.+. ..+++++++
T Consensus 86 ------~~~l~lwDtPG~gdg~~~D~~----~r~~~~d~l~~~DLvL~l~~~~draL~~-d~~f~~dVi~~~~~~~~i~~ 154 (296)
T COG3596 86 ------GENLVLWDTPGLGDGKDKDAE----HRQLYRDYLPKLDLVLWLIKADDRALGT-DEDFLRDVIILGLDKRVLFV 154 (296)
T ss_pred ------ccceEEecCCCcccchhhhHH----HHHHHHHHhhhccEEEEeccCCCccccC-CHHHHHHHHHhccCceeEEE
Confidence 047899999999875332211 2335677799999999999987643322 233444432 345799999
Q ss_pred ecCCCCCC
Q 009050 357 LNKADQVD 364 (545)
Q Consensus 357 lNK~D~~~ 364 (545)
+|.+|...
T Consensus 155 VtQ~D~a~ 162 (296)
T COG3596 155 VTQADRAE 162 (296)
T ss_pred Eehhhhhc
Confidence 99999764
No 256
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.19 E-value=2.6e-11 Score=116.36 Aligned_cols=166 Identities=20% Similarity=0.290 Sum_probs=98.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC-----cccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP-----TTDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p-----~t~r~~i~~~~~~~~ 246 (545)
.++.|++ ..++++++|+..+ +++|+|++|+|||||++.|+|...| |.+ +...+ ...+..+.+.++...
T Consensus 7 l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~ 84 (200)
T PRK13540 7 LDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSG 84 (200)
T ss_pred EEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccc
Confidence 3445655 3489999998876 9999999999999999999998753 110 00000 001112233333222
Q ss_pred ccCCceeEeecCCCCCCcccccccchh-hh-hhhcCchhhccCcee---ecC-CCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLS-KF-ECSQMPHSLLEHITL---VDT-PGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~-~~-~~~~~~~~lL~~v~l---iDT-PG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
..++.|+ ..+.... .. .......++++.+.+ .|. ++.+| |++|++. ++++++.
T Consensus 85 ~~~~~tv-------------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~-------laral~~ 144 (200)
T PRK13540 85 INPYLTL-------------RENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVA-------LLRLWMS 144 (200)
T ss_pred cCcCCCH-------------HHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHH-------HHHHHhc
Confidence 2222222 1110000 00 000112333333332 343 36677 8999988 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHH
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQ 367 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~ 367 (545)
+|+++|+ .+|+.. ...+.+++..+++.+..++++.+..+..+..+
T Consensus 145 ~p~~lilDEP~~~LD~~~---~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d 194 (200)
T PRK13540 145 KAKLWLLDEPLVALDELS---LLTIITKIQEHRAKGGAVLLTSHQDLPLNKAD 194 (200)
T ss_pred CCCEEEEeCCCcccCHHH---HHHHHHHHHHHHHcCCEEEEEeCCchhccccc
Confidence 9999998 555543 46677788877666788899988877665443
No 257
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=7e-11 Score=108.66 Aligned_cols=147 Identities=19% Similarity=0.311 Sum_probs=95.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|..|+|||||+-+.....+. .. ..|+....... .++.+...
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~--e~-~e~TIGaaF~t-----------ktv~~~~~------------------- 52 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFH--EN-IEPTIGAAFLT-----------KTVTVDDN------------------- 52 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccc--cc-cccccccEEEE-----------EEEEeCCc-------------------
Confidence 37999999999999999888776652 11 12222111100 00000000
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCC---eEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDD---KIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~---~ii 354 (545)
.-.+.||||+|. |+ |..++..+.++|+++|+++|.++.+.......|++.|++... -+.
T Consensus 53 -------~ikfeIWDTAGQ---ER--------y~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~via 114 (200)
T KOG0092|consen 53 -------TIKFEIWDTAGQ---ER--------YHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIA 114 (200)
T ss_pred -------EEEEEEEEcCCc---cc--------ccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 026789999998 22 334677788999999999999987667778889999977543 355
Q ss_pred EEecCCCCCCHHHH--HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQL--MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l--~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+..++ .++... .. ....+.+.+||++|.++++
T Consensus 115 lvGNK~DL~~~R~V~~~ea~~y-----Ae---~~gll~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 115 LVGNKADLLERREVEFEEAQAY-----AE---SQGLLFFETSAKTGENVNE 157 (200)
T ss_pred EecchhhhhhcccccHHHHHHH-----HH---hcCCEEEEEecccccCHHH
Confidence 69999999873222 121111 11 1234447899999999875
No 258
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.7e-11 Score=119.82 Aligned_cols=169 Identities=25% Similarity=0.385 Sum_probs=111.8
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CC-CCCCCCcc-------cceEEEEeCC
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GA-HIGPEPTT-------DRFVVVMSGV 243 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~-~v~~~p~t-------~r~~i~~~~~ 243 (545)
...+.|.+. ..+++++++...+ .++|+|+||||||||++.|.|...| |. .+...+.+ -+..+.+.+|
T Consensus 8 ~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQ 86 (235)
T COG1122 8 NLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQ 86 (235)
T ss_pred EEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEE
Confidence 345677665 5799999999886 9999999999999999999999975 21 12222222 2344555555
Q ss_pred Ccc-ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 244 DDR-SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 244 ~~~-~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
++. .+-+.|+..+ ..| |....| +...+...+..+.|+.+.+-+ -|-.+| ||+||++ +|..+
T Consensus 87 npd~q~~~~tV~~e--vaf-g~~n~g---~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRva-------IA~vL 153 (235)
T COG1122 87 NPDDQLFGPTVEDE--VAF-GLENLG---LPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVA-------IAGVL 153 (235)
T ss_pred CcccccccCcHHHH--Hhh-chhhcC---CCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHH-------hhHHH
Confidence 442 1222222111 111 111111 122234555666777777653 567777 8999999 88889
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCCC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKAD 361 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~D 361 (545)
+-+|+++|+ .+|+.. ..++.+++..++.. +..++++.|.+|
T Consensus 154 a~~P~iliLDEPta~LD~~~---~~~l~~~l~~L~~~~~~tii~~tHd~~ 200 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKG---RRELLELLKKLKEEGGKTIIIVTHDLE 200 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHH---HHHHHHHHHHHHhcCCCeEEEEeCcHH
Confidence 999999999 677754 57788888888876 578888888555
No 259
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.3e-10 Score=116.99 Aligned_cols=177 Identities=19% Similarity=0.251 Sum_probs=112.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCC-------------CCCcccceEEEEeCCCccccCCceeEeecCCCCCCcc
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIG-------------PEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLT 265 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~-------------~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~ 265 (545)
.++++|+..+|||||+-+|+=.. -.+. ....+..+..++..-.++..+|.|+.... .
T Consensus 9 nl~~iGHVD~GKSTl~GrLly~~---G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~-------~ 78 (428)
T COG5256 9 NLVFIGHVDAGKSTLVGRLLYDL---GEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAH-------S 78 (428)
T ss_pred EEEEEcCCCCCchhhhhhhHHHh---CCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEE-------E
Confidence 78999999999999998887433 1111 12344477788888888899999985432 1
Q ss_pred cccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCC------ccHHH
Q 009050 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD------ISDEF 339 (545)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~------~~~~~ 339 (545)
.|... ...++|+|+||... -+. -.-.-+.+||+.+|++|+.... ...+.
T Consensus 79 ~fet~--------------k~~~tIiDaPGHrd----Fvk-------nmItGasqAD~aVLVV~a~~~efE~g~~~~gQt 133 (428)
T COG5256 79 KFETD--------------KYNFTIIDAPGHRD----FVK-------NMITGASQADVAVLVVDARDGEFEAGFGVGGQT 133 (428)
T ss_pred EeecC--------------CceEEEeeCCchHH----HHH-------HhhcchhhccEEEEEEECCCCccccccccCCch
Confidence 11110 02689999999643 111 1223368999999999998731 22333
Q ss_pred HHHHHHHhcCC-CeEEEEecCCCCCC--HHHHHHHHHHHHHHhcccccCC--ccEEEEeeccCCCccCcccCCCccHHh
Q 009050 340 KRVITSLRGHD-DKIRVVLNKADQVD--TQQLMRVYGALMWSLGKVLNTP--EVVRVYIGSFNDKPVNESAFGPLGKEL 413 (545)
Q Consensus 340 ~~~l~~L~~~~-~~iiiVlNK~D~~~--~~~l~~v~~~l~~~l~k~~~~~--~v~~v~iSa~~~~~~~~~~~~~~~~~~ 413 (545)
++.+--.+-.| ..+++++||||.++ .+...++...+-. +-+.+++. ++..++||++.|.++.+.+ +..+|+
T Consensus 134 rEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~-l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s--~~~pWY 209 (428)
T COG5256 134 REHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSK-LLKMVGYNPKDVPFIPISGFKGDNLTKKS--ENMPWY 209 (428)
T ss_pred hHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHH-HHHHcCCCccCCeEEecccccCCcccccC--cCCcCc
Confidence 33332223333 37899999999995 3445555444322 33334433 5767999999999998743 344553
No 260
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.19 E-value=5.7e-11 Score=113.78 Aligned_cols=169 Identities=21% Similarity=0.308 Sum_probs=106.3
Q ss_pred ccCceeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCccc-------ceEEE
Q 009050 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTTD-------RFVVV 239 (545)
Q Consensus 172 l~~l~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t~-------r~~i~ 239 (545)
++.+.+.|.-+.+..+++++++|+..+ .++|+|++|||||||.++|+|.+.| |.+ +.+++.+. +..+-
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQ 85 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQ 85 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcccee
Confidence 344555554444334689999999877 9999999999999999999999975 221 11212111 23344
Q ss_pred EeCCCcc--ccCCceeE--eecCCCCCCcccccccchhhhhhhcCchhhccCceee-----cCCCCCC-hhhhhhhhccC
Q 009050 240 MSGVDDR--SIPGNTVA--VQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV-----DTPGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 240 ~~~~~~~--~~~g~t~~--~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li-----DTPG~~s-gekq~v~~~~~ 309 (545)
|.+|++. .-|-.++. ..+.....|+.. ......++|+.|.+- ..|-.+| |++||++
T Consensus 86 mVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~----------~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRia---- 151 (252)
T COG1124 86 MVFQDPYSSLNPRRTVGRILSEPLRPHGLSK----------SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIA---- 151 (252)
T ss_pred EEecCCccccCcchhHHHHHhhhhccCCccH----------HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHH----
Confidence 4555432 22222220 111111111111 111145566666553 3788888 7999999
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
+||+++.+|+++|+ .+|+. +..+..+++..+++ .+..+++|-|..
T Consensus 152 ---IARAL~~~PklLIlDEptSaLD~s---iQa~IlnlL~~l~~~~~lt~l~IsHdl 202 (252)
T COG1124 152 ---IARALIPEPKLLILDEPTSALDVS---VQAQILNLLLELKKERGLTYLFISHDL 202 (252)
T ss_pred ---HHHHhccCCCEEEecCchhhhcHH---HHHHHHHHHHHHHHhcCceEEEEeCcH
Confidence 99999999999999 67765 36778888888865 467888888843
No 261
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.1e-10 Score=113.39 Aligned_cols=152 Identities=24% Similarity=0.280 Sum_probs=98.4
Q ss_pred cccccC--ceEEEEcCCCCChHHHHHHHHcccCC--CCCC-----------CCCCcccceEEEEeCCCccccCCceeEee
Q 009050 192 SDFDAK--PMVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-----------GPEPTTDRFVVVMSGVDDRSIPGNTVAVQ 256 (545)
Q Consensus 192 ~~~~~~--~~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-----------~~~p~t~r~~i~~~~~~~~~~~g~t~~~~ 256 (545)
++|... .+.|+.|++|+|||||||++.|...| |.+. +---...+..+.|.+|+.+..|..|+.-+
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgN 96 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGN 96 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecc
Confidence 444443 39999999999999999999999987 2111 00112235567788888888888777433
Q ss_pred cCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCC
Q 009050 257 ADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDP 330 (545)
Q Consensus 257 ~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~ 330 (545)
..+ |.+......+......--..++|++ .|+.+| |||||++ +.|+++..|+++|+ -+|-
T Consensus 97 L~Y---G~~~~~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVA-------IGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 97 LRY---GMWKSMRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVA-------IGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred hhh---hhcccchHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHH-------HHHHHhcCCCeeeecCchhhccc
Confidence 322 2211111001111111111222222 699999 7999999 89999999999998 4554
Q ss_pred CCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 331 HKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 331 ~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
.. ..|..-+++.|.+ .+.|++.|-|-+|
T Consensus 162 ~R---K~EilpylERL~~e~~IPIlYVSHS~~ 190 (352)
T COG4148 162 PR---KREILPYLERLRDEINIPILYVSHSLD 190 (352)
T ss_pred ch---hhHHHHHHHHHHHhcCCCEEEEecCHH
Confidence 43 4677888888865 4789999999555
No 262
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.19 E-value=1.6e-10 Score=122.77 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=64.9
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCc-cHHHHHHHHHHhcCC-CeEEEEecCCCCC
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDI-SDEFKRVITSLRGHD-DKIRVVLNKADQV 363 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~-~~~~~~~l~~L~~~~-~~iiiVlNK~D~~ 363 (545)
..++++||||... |.......+..+|++++++|+.. +. ..+..+.+..+...+ .++++|+||+|+.
T Consensus 80 ~~i~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~-g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 80 RRVSFVDAPGHET-----------LMATMLSGAALMDGALLVIAANE-PCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cEEEEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCC-CccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 3689999999722 11123344678999999999986 33 344444555454444 4689999999998
Q ss_pred CHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 364 DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 364 ~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+.+.....+..+...+... ....++.+++||++|.|++.
T Consensus 148 ~~~~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g~gi~~ 186 (406)
T TIGR03680 148 SKEKALENYEEIKEFVKGT-VAENAPIIPVSALHNANIDA 186 (406)
T ss_pred CHHHHHHHHHHHHhhhhhc-ccCCCeEEEEECCCCCChHH
Confidence 7544333332221111111 11234558999999998764
No 263
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.19 E-value=5.9e-11 Score=113.28 Aligned_cols=170 Identities=25% Similarity=0.312 Sum_probs=102.2
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCc--cccCCce
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDD--RSIPGNT 252 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~--~~~~g~t 252 (545)
+++.|++. .++++++++++. +++|+|++|+|||||++.++|...| .+.+.......+.-..+.. .......
T Consensus 14 v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P---~~GeI~i~G~~i~~ls~~~~~~ir~r~G 88 (263)
T COG1127 14 VTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP---DKGEILIDGEDIPQLSEEELYEIRKRMG 88 (263)
T ss_pred eeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC---CCCeEEEcCcchhccCHHHHHHHHhhee
Confidence 45577774 499999999987 9999999999999999999999965 1111111100000000000 0011222
Q ss_pred eEeecCCCCCCcccccccchhhhhhhcCc--------hhhccCceee----c-CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 253 VAVQADMPFSGLTTFGTAFLSKFECSQMP--------HSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 253 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~--------~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
+.++..-.|..+..++|.-+.-.+...++ ...|+.+.+- | .|..+| |++.|++ +||+.+
T Consensus 89 vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRva-------LARAia 161 (263)
T COG1127 89 VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVA-------LARAIA 161 (263)
T ss_pred EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHH-------HHHHHh
Confidence 33333333444444444311111111122 2222333331 1 577778 6788887 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
-+|+++++ ++||-. ...+.+++..|++ .+.++++|.|..|
T Consensus 162 ldPell~~DEPtsGLDPI~---a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 162 LDPELLFLDEPTSGLDPIS---AGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred cCCCEEEecCCCCCCCcch---HHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 99999999 788875 4667788888865 4778999998555
No 264
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.19 E-value=1.3e-11 Score=119.99 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=96.1
Q ss_pred eEEeCCcc--cCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc-----------cceEEEEeC
Q 009050 178 TYRFNDFV--SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT-----------DRFVVVMSG 242 (545)
Q Consensus 178 ~~~~~~~~--~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t-----------~r~~i~~~~ 242 (545)
++.|+... .+++++++|+..+ +++|+|+||||||||++.|+|...| .++...- .+..+.+.+
T Consensus 8 ~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~ 84 (218)
T cd03266 8 TKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP---DAGFATVDGFDVVKEPAEARRRLGFVS 84 (218)
T ss_pred EEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEEcccCHHHHHhhEEEec
Confidence 44565421 1589999988776 9999999999999999999998743 1211110 012233333
Q ss_pred CCccccCCceeEeecCCCCCCccccccc-ch------hhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccCh
Q 009050 243 VDDRSIPGNTVAVQADMPFSGLTTFGTA-FL------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDF 310 (545)
Q Consensus 243 ~~~~~~~g~t~~~~~~~~~~gl~~~~~~-~~------~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~ 310 (545)
+.....++.++ ..+. +. ..........++++.+.+.+ .++.+| |++|++.
T Consensus 85 q~~~~~~~~tv-------------~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~----- 146 (218)
T cd03266 85 DSTGLYDRLTA-------------RENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVA----- 146 (218)
T ss_pred CCcccCcCCCH-------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHH-----
Confidence 33322222221 1111 00 01111223345566665543 456677 8999988
Q ss_pred HHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 311 ~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|.
T Consensus 147 --laral~~~p~illlDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~tH~ 195 (218)
T cd03266 147 --IARALVHDPPVLLLDEPTTGLDVMA---TRALREFIRQLRALGKCILFSTHI 195 (218)
T ss_pred --HHHHHhcCCCEEEEcCCCcCCCHHH---HHHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999999999988 566543 566778888876667788888884
No 265
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.19 E-value=2.1e-11 Score=127.80 Aligned_cols=167 Identities=22% Similarity=0.250 Sum_probs=101.7
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc----ccceEEEEeCCCccc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT----TDRFVVVMSGVDDRS 247 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~----t~r~~i~~~~~~~~~ 247 (545)
+++.|++. .++++++|+..+ +++|+|++|||||||++.|+|...| |.+ +..++- ..+..+.+.+++...
T Consensus 9 l~~~~~~~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l 86 (369)
T PRK11000 9 VTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYAL 86 (369)
T ss_pred EEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCccc
Confidence 34466653 488999888766 9999999999999999999998854 111 001000 012234455554444
Q ss_pred cCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCC
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aD 322 (545)
.+..|+..+..+.. ...+ ..+.+......++++.+.+.+ .|+.+| |++||+. +|++++.+|+
T Consensus 87 ~~~~tv~eni~~~~---~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRva-------LAraL~~~P~ 153 (369)
T PRK11000 87 YPHLSVAENMSFGL---KLAG---AKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVA-------IGRTLVAEPS 153 (369)
T ss_pred CCCCCHHHHHHhHH---hhcC---CCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-------HHHHHhcCCC
Confidence 44433311111100 0000 001111223445566666543 567788 8999998 8999999999
Q ss_pred EEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 323 LILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 323 liLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
++|+ .+|+.. ...+.++++.+.. .+.++++|.|..+
T Consensus 154 lLLLDEPts~LD~~~---~~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 154 VFLLDEPLSNLDAAL---RVQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred EEEEeCCcccCCHHH---HHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 9999 566653 4666777777754 4778888888543
No 266
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.19 E-value=4e-11 Score=118.02 Aligned_cols=168 Identities=26% Similarity=0.368 Sum_probs=97.1
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc-------cceEEEEeCCCc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT-------DRFVVVMSGVDD 245 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t-------~r~~i~~~~~~~ 245 (545)
++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+.. .+..+.+.++..
T Consensus 7 ~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 84 (236)
T cd03219 7 TKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIP 84 (236)
T ss_pred EEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEeccc
Confidence 345654 3488999988776 9999999999999999999998753 111 0011100 012244444544
Q ss_pred cccCCceeEeecCCCCCCcccccccch------hhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHH
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFL------SKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVT 314 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~------~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia 314 (545)
...++.|+..+........ .+..+. ..........++++.+.+- | .++.+| |++|++. ++
T Consensus 85 ~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la 155 (236)
T cd03219 85 RLFPELTVLENVMVAAQAR--TGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLE-------IA 155 (236)
T ss_pred ccccCCCHHHHHHHHHhhc--cccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHH-------HH
Confidence 4444433311100000000 000000 0011122334455555553 2 345677 8999988 89
Q ss_pred HHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 315 ~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|.
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~vsH~ 202 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEE---TEELAELIRELRERGITVLLVEHD 202 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEecC
Confidence 999999999998 566543 456777887776667788888884
No 267
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.18 E-value=3.6e-10 Score=101.10 Aligned_cols=145 Identities=21% Similarity=0.268 Sum_probs=93.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.+|.++|..||||||+++.++|... ..++| |-.+.+- | ..+.+
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~--~~i~p---t~gf~Ik------------t------l~~~~-------------- 59 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT--DTISP---TLGFQIK------------T------LEYKG-------------- 59 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc--cccCC---ccceeeE------------E------EEecc--------------
Confidence 3799999999999999999999885 44444 2222221 0 11112
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH----hcCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----RGHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L----~~~~~~i 353 (545)
.+++++|.-|..+... ..+.+.+.+|.+|+|+|.+..-..++....++.+ +-.|.|+
T Consensus 60 --------~~L~iwDvGGq~~lr~-----------~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~ 120 (185)
T KOG0073|consen 60 --------YTLNIWDVGGQKTLRS-----------YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPL 120 (185)
T ss_pred --------eEEEEEEcCCcchhHH-----------HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCce
Confidence 2789999999865321 2455689999999999997632223333333333 2247899
Q ss_pred EEEecCCCCCC---HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVD---TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~---~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++.||.|+.. .+++..+. ++..+........+.+|+.+|+++.+
T Consensus 121 Lvlank~dl~~~l~~~~i~~~~-----~L~~l~ks~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 121 LVLANKQDLPGALSLEEISKAL-----DLEELAKSHHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred EEEEecCcCccccCHHHHHHhh-----CHHHhccccCceEEEEeccccccHHH
Confidence 99999999873 33333322 22233344455557899999988774
No 268
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=2.6e-11 Score=117.51 Aligned_cols=165 Identities=25% Similarity=0.318 Sum_probs=95.3
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC-c---ccceEEEEeCCCccc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP-T---TDRFVVVMSGVDDRS 247 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p-~---t~r~~i~~~~~~~~~ 247 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ ..... . ..+..+.+.++....
T Consensus 6 l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~ 83 (213)
T cd03259 6 LSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYAL 83 (213)
T ss_pred eEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhh
Confidence 3445655 3488999998877 9999999999999999999998753 111 00000 0 011223333333222
Q ss_pred cCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCC
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aD 322 (545)
.++.++..+..+.. ...+ ...........++++.+.+. | .|+.+| |++|++. ++++++.+|+
T Consensus 84 ~~~~tv~~~l~~~~---~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~-------la~al~~~p~ 150 (213)
T cd03259 84 FPHLTVAENIAFGL---KLRG---VPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVA-------LARALAREPS 150 (213)
T ss_pred ccCCcHHHHHHhHH---HHcC---CCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH-------HHHHHhcCCC
Confidence 22222210000000 0000 00001112234455555553 3 356677 8999988 8999999999
Q ss_pred EEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 323 LILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 323 liLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
++|+ .+|+.. ...+.+++..+.. .+..++++.|.
T Consensus 151 ~lllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tii~~sH~ 190 (213)
T cd03259 151 LLLLDEPLSALDAKL---REELREELKELQRELGITTIYVTHD 190 (213)
T ss_pred EEEEcCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEecC
Confidence 9998 566543 4667777777755 46788888874
No 269
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.2e-10 Score=107.56 Aligned_cols=150 Identities=19% Similarity=0.241 Sum_probs=95.9
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc-ccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT-TDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~-t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
-..|.|+|.+|+|||-|+-++.+..++....+...- ....++. +.|.+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e--------~~gk~----------------------- 57 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVE--------LDGKT----------------------- 57 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEee--------ecceE-----------------------
Confidence 347999999999999999999988874222111100 0000100 11111
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC---CCe
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH---DDK 352 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~---~~~ 352 (545)
-.+.+|||+|. |+ |..++..+.++|+.||+++|.++......+..|+.++.++ +.+
T Consensus 58 ----------iKlQIWDTAGQ---ER--------Frtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~ 116 (205)
T KOG0084|consen 58 ----------IKLQIWDTAGQ---ER--------FRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVP 116 (205)
T ss_pred ----------EEEEeeecccc---HH--------HhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCC
Confidence 17889999998 33 3347788899999999999999854455666777777654 458
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.++|.||+|+.+...+..-.... ++...+.+. .+.+||+.+.++++
T Consensus 117 ~lLVGNK~Dl~~~~~v~~~~a~~---fa~~~~~~~--f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 117 KLLVGNKCDLTEKRVVSTEEAQE---FADELGIPI--FLETSAKDSTNVED 162 (205)
T ss_pred eEEEeeccccHhheecCHHHHHH---HHHhcCCcc--eeecccCCccCHHH
Confidence 99999999998643221111111 111112211 37899999987764
No 270
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.17 E-value=5.4e-11 Score=115.29 Aligned_cols=157 Identities=24% Similarity=0.302 Sum_probs=91.9
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCcc---------cceEEEEeCCCccccCCce
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPTT---------DRFVVVMSGVDDRSIPGNT 252 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~t---------~r~~i~~~~~~~~~~~g~t 252 (545)
.++++++|+..+ +++|+|+||||||||++.|+|...| |.+. ...+-+ .+..+.+.++.....++.+
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRT 95 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCc
Confidence 488999988877 9999999999999999999998743 1110 000000 0122333333332222222
Q ss_pred eEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-
Q 009050 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL- 326 (545)
Q Consensus 253 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl- 326 (545)
+..+..... ...+ ...........++++.+.+-+ .|+.+| |++|++. ++++++.+|+++|+
T Consensus 96 v~~~l~~~~---~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~lllLD 162 (214)
T TIGR02673 96 VYENVALPL---EVRG---KKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVA-------IARAIVNSPPLLLAD 162 (214)
T ss_pred HHHHHHHHH---HHcC---CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HHHHHhCCCCEEEEe
Confidence 210000000 0000 000011122334455555432 456777 8999998 89999999999999
Q ss_pred ----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 327 ----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 327 ----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
.+|+.. ...+.++++.+.+.+..++++.|.
T Consensus 163 EPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~tH~ 196 (214)
T TIGR02673 163 EPTGNLDPDL---SERILDLLKRLNKRGTTVIVATHD 196 (214)
T ss_pred CCcccCCHHH---HHHHHHHHHHHHHcCCEEEEEeCC
Confidence 666653 566778888876667788888874
No 271
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.17 E-value=1.7e-10 Score=125.76 Aligned_cols=133 Identities=19% Similarity=0.231 Sum_probs=84.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCC-cccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP-TTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p-~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~~ 275 (545)
..|+|+|.+|+|||||+++|+-..-.-...+... ..+.....+.....+...|.++... ..+.+.+
T Consensus 12 RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~------------ 79 (527)
T TIGR00503 12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRD------------ 79 (527)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCC------------
Confidence 3799999999999999999874321001111110 0011111222233334456655322 2233333
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..++|+||||... |...+...+..+|.+|+|+|+.. ++......+++.+...+.|+++
T Consensus 80 ----------~~inliDTPG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~~~Piiv 137 (527)
T TIGR00503 80 ----------CLVNLLDTPGHED-----------FSEDTYRTLTAVDNCLMVIDAAK-GVETRTRKLMEVTRLRDTPIFT 137 (527)
T ss_pred ----------eEEEEEECCChhh-----------HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEE
Confidence 2789999999832 22234456789999999999987 5666667777777777899999
Q ss_pred EecCCCCCC
Q 009050 356 VLNKADQVD 364 (545)
Q Consensus 356 VlNK~D~~~ 364 (545)
++||+|+..
T Consensus 138 viNKiD~~~ 146 (527)
T TIGR00503 138 FMNKLDRDI 146 (527)
T ss_pred EEECccccC
Confidence 999999863
No 272
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.17 E-value=1.6e-11 Score=127.95 Aligned_cols=159 Identities=23% Similarity=0.317 Sum_probs=100.4
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--C------CCCCCC-Cccc----ceEEEEeCCCccccCCc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--G------AHIGPE-PTTD----RFVVVMSGVDDRSIPGN 251 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~------~~v~~~-p~t~----r~~i~~~~~~~~~~~g~ 251 (545)
.++++++|+..+ +++|+|++|||||||+++|+|...| | ..+... +... +..+.+.++.....+..
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 378889888877 9999999999999999999999854 1 111110 0000 33455555555555444
Q ss_pred eeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE
Q 009050 252 TVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (545)
Q Consensus 252 t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl 326 (545)
|+..+..+. ....+ ..+.+......++++.+.|-+ .|+.+| |++||+. +|++++.+|+++|+
T Consensus 87 TV~eNi~~~---~~~~~---~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~-------lARAL~~~p~iLLl 153 (363)
T TIGR01186 87 TILQNTSLG---PELLG---WPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVG-------LARALAAEPDILLM 153 (363)
T ss_pred CHHHHHHHH---HHHcC---CCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEE
Confidence 431111000 00000 011122334455666666643 577788 7999998 89999999999999
Q ss_pred -----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 327 -----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 327 -----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
.+|+.. ..++.+.+..+.. .+..+++|.|..|
T Consensus 154 DEP~saLD~~~---r~~l~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 154 DEAFSALDPLI---RDSMQDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred eCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 566653 5677777777754 4788999988443
No 273
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.17 E-value=5.6e-11 Score=115.15 Aligned_cols=169 Identities=24% Similarity=0.312 Sum_probs=96.9
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCC-cccceEEEEeCCCcccc--C
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEP-TTDRFVVVMSGVDDRSI--P 249 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p-~t~r~~i~~~~~~~~~~--~ 249 (545)
++.|+. ..++++++|+..+ +++|+|++|||||||++.|+|...| |.+. ...+ ...+..+.+.+++.... .
T Consensus 6 ~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~ 83 (213)
T cd03235 6 TVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDF 83 (213)
T ss_pred eeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCC
Confidence 335554 3488999988876 9999999999999999999998753 1110 1111 01122344444443221 1
Q ss_pred CceeEeecCCCCCCc-ccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCE
Q 009050 250 GNTVAVQADMPFSGL-TTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (545)
Q Consensus 250 g~t~~~~~~~~~~gl-~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDl 323 (545)
..|+..+........ ...+. ...........+++.+.+- + .++.+| |++|++. ++++++.+|++
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~al~~~p~l 153 (213)
T cd03235 84 PISVRDVVLMGLYGHKGLFRR---LSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVL-------LARALVQDPDL 153 (213)
T ss_pred CCcHHHHHHhccccccccccC---CCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHH-------HHHHHHcCCCE
Confidence 112110000000000 00000 0001112233444444442 2 567788 8999998 89999999999
Q ss_pred EEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 324 ILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 324 iLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+|+ .+|+.. ...+.+++..+.+.+..++++.|..+
T Consensus 154 lllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tvi~~sH~~~ 193 (213)
T cd03235 154 LLLDEPFAGVDPKT---QEDIYELLRELRREGMTILVVTHDLG 193 (213)
T ss_pred EEEeCCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999 566643 56677788877666778888888543
No 274
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.17 E-value=1.5e-10 Score=103.29 Aligned_cols=100 Identities=17% Similarity=0.179 Sum_probs=61.3
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHH----HHHHHhcCCCeEEEEecCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKR----VITSLRGHDDKIRVVLNKADQ 362 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~----~l~~L~~~~~~iiiVlNK~D~ 362 (545)
.+.++||||...... ........+|.+++++|............ .+......+.|+++|+||+|+
T Consensus 46 ~~~l~D~~g~~~~~~-----------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~ 114 (157)
T cd00882 46 KLQIWDTAGQERFRS-----------LRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDL 114 (157)
T ss_pred EEEEEecCChHHHHh-----------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccc
Confidence 789999999854211 12345789999999999987322222222 222334567899999999999
Q ss_pred CCHHHHHHHH-HHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 363 VDTQQLMRVY-GALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 363 ~~~~~l~~v~-~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.......... .... .. ...++.+.+|+..+.++.+
T Consensus 115 ~~~~~~~~~~~~~~~----~~--~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 115 PEERVVSEEELAEQL----AK--ELGVPYFETSAKTGENVEE 150 (157)
T ss_pred ccccchHHHHHHHHH----Hh--hcCCcEEEEecCCCCChHH
Confidence 8654332221 1110 11 1223448899999988764
No 275
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.17 E-value=1e-10 Score=107.98 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=84.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||++.+++..++.. .+++...... ++ .+.|- .
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~----~~~~~~~~~~------------~i------~~~~~-----~-------- 46 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL----ESPEGGRFKK------------EV------LVDGQ-----S-------- 46 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC----CCCCccceEE------------EE------EECCE-----E--------
Confidence 589999999999999998877665211 1111110000 00 00110 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ii 354 (545)
..+.++||+|... ..+...+|.+++++|.++....++...++..+.. .+.|++
T Consensus 47 -------~~l~i~D~~g~~~----------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~pii 103 (158)
T cd04103 47 -------HLLLIRDEGGAPD----------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLI 103 (158)
T ss_pred -------EEEEEEECCCCCc----------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 1578999999832 0124679999999999985544555566666643 346999
Q ss_pred EEecCCCCCC--HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVD--TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~--~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||.|+.. ...+..... ..+.+.. .....+.+||++|.|+++
T Consensus 104 lvgnK~Dl~~~~~~~v~~~~~---~~~~~~~--~~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 104 LVGTQDAISESNPRVIDDARA---RQLCADM--KRCSYYETCATYGLNVER 149 (158)
T ss_pred EEeeHHHhhhcCCcccCHHHH---HHHHHHh--CCCcEEEEecCCCCCHHH
Confidence 9999999742 222221111 1112211 112337899999999885
No 276
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.17 E-value=1.4e-10 Score=128.57 Aligned_cols=165 Identities=21% Similarity=0.283 Sum_probs=95.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~~ 277 (545)
.++|+|..++|||||+++|+... ..+.... .....+.....+...|.|+.... .+.|... .+..
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~t---g~i~~~~---~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~--dg~~------- 73 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELT---GTLSERE---MKAQVLDSMDLERERGITIKAQAVRLNYKAK--DGET------- 73 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCcccc---cccccccCchHHhhcCCcccccEEEEEEEcc--CCCc-------
Confidence 68999999999999999998754 1111110 01111222222334455542211 1111100 0100
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..++||||||..+ |...+..++..+|.+|+++|++. +...+....+..+...+.|+++|+
T Consensus 74 --------~~lnLiDTPGh~d-----------F~~~v~~sl~~aD~aILVVDas~-gv~~qt~~~~~~~~~~~lpiIvVi 133 (600)
T PRK05433 74 --------YILNLIDTPGHVD-----------FSYEVSRSLAACEGALLVVDASQ-GVEAQTLANVYLALENDLEIIPVL 133 (600)
T ss_pred --------EEEEEEECCCcHH-----------HHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEEE
Confidence 2689999999954 22233455788999999999987 445555555555555678999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+.... ..++...+...++ ....++ +++||++|.|+++
T Consensus 134 NKiDl~~a~-~~~v~~ei~~~lg--~~~~~v--i~iSAktG~GI~~ 174 (600)
T PRK05433 134 NKIDLPAAD-PERVKQEIEDVIG--IDASDA--VLVSAKTGIGIEE 174 (600)
T ss_pred ECCCCCccc-HHHHHHHHHHHhC--CCcceE--EEEecCCCCCHHH
Confidence 999986421 1222222211111 111234 8999999999875
No 277
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.16 E-value=6.8e-11 Score=114.54 Aligned_cols=162 Identities=20% Similarity=0.219 Sum_probs=94.7
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc----------ccceEEEEeCCCc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT----------TDRFVVVMSGVDD 245 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~----------t~r~~i~~~~~~~ 245 (545)
++.|+. .+++++++|+..+ +++|+|+||||||||++.|+|...| .++... ..+..+.+.++..
T Consensus 7 ~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~v~~~g~~~~~~~~~~~~i~~~~q~~ 81 (213)
T cd03301 7 TKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP---TSGRIYIGGRDVTDLPPKDRDIAMVFQNY 81 (213)
T ss_pred EEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCcccceEEEEecCh
Confidence 445655 3588999988877 9999999999999999999998743 111110 0111233333333
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
...+..++..+..... ...+ ............++..+.+. | .|+.+| |++|++. ++++++.+
T Consensus 82 ~~~~~~tv~~~l~~~~---~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~-------laral~~~ 148 (213)
T cd03301 82 ALYPHMTVYDNIAFGL---KLRK---VPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVA-------LGRAIVRE 148 (213)
T ss_pred hhccCCCHHHHHHHHH---HhcC---CCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHH-------HHHHHhcC
Confidence 2222222210000000 0000 00011112233445555443 3 456777 8999988 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
|+++|+ .+|+.. ...+.+++..+.. .+..++++.|..
T Consensus 149 p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 149 PKVFLMDEPLSNLDAKL---RVQMRAELKRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred CCEEEEcCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 999988 566543 4566777777765 477888888843
No 278
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.16 E-value=2e-10 Score=110.26 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=64.5
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc--CCCeEEEEecCCCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRVVLNKADQVD 364 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~--~~~~iiiVlNK~D~~~ 364 (545)
.+.||||||... |..+...+...+|++|+|+|.+.....+....|+..+.. .+.|+++|.||+|+..
T Consensus 45 ~l~iwDt~G~e~-----------~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 113 (200)
T smart00176 45 RFNVWDTAGQEK-----------FGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD 113 (200)
T ss_pred EEEEEECCCchh-----------hhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 788999999832 222445568999999999999974333445566666654 4679999999999853
Q ss_pred HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 365 TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 365 ~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.....+.. .+ .+. .....+.+||++|.|+.+
T Consensus 114 ~~v~~~~~-~~----~~~---~~~~~~e~SAk~~~~v~~ 144 (200)
T smart00176 114 RKVKAKSI-TF----HRK---KNLQYYDISAKSNYNFEK 144 (200)
T ss_pred ccCCHHHH-HH----HHH---cCCEEEEEeCCCCCCHHH
Confidence 21000111 11 111 123447899999999886
No 279
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.16 E-value=6e-11 Score=125.10 Aligned_cols=170 Identities=21% Similarity=0.257 Sum_probs=101.3
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCC-CC-----cccceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGP-EP-----TTDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~-~p-----~t~r~~i~~~~~~~ 245 (545)
+++.|++ ..++++++|...+ +++|+|+||||||||++.|+|...| |.+ +.. .+ ...+..+.+.+++.
T Consensus 9 ls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~ 86 (402)
T PRK09536 9 LSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDT 86 (402)
T ss_pred EEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCC
Confidence 3446765 3589999999877 9999999999999999999998754 110 000 00 01122344444443
Q ss_pred cccCCceeEeecCCCCCCcccccccchh-hhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLS-KFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~-~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
......++.....+ +...+...+.. .........++++.+.+. | .++.+| |++||+. +|++++.
T Consensus 87 ~l~~~~tv~e~v~~---~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~-------IArAL~~ 156 (402)
T PRK09536 87 SLSFEFDVRQVVEM---GRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVL-------LARALAQ 156 (402)
T ss_pred CCCCCCCHHHHHHh---ccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHHc
Confidence 33232222100000 00000000000 011122344556666554 3 346677 8999998 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+|+++|+ .+|+.. ..++.++++.+.+.+..++++.|..+
T Consensus 157 ~P~iLLLDEPtsgLD~~~---~~~l~~lL~~l~~~g~TIIivsHdl~ 200 (402)
T PRK09536 157 ATPVLLLDEPTASLDINH---QVRTLELVRRLVDDGKTAVAAIHDLD 200 (402)
T ss_pred CCCEEEEECCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 9999999 566653 46778888888766778888888443
No 280
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.16 E-value=1.1e-10 Score=112.84 Aligned_cols=156 Identities=26% Similarity=0.349 Sum_probs=93.3
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc------------ceEEEEeCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD------------RFVVVMSGV 243 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~------------r~~i~~~~~ 243 (545)
++.|+.....++++++|+..+ +++|+|+||||||||++.|+|...| .++..... +..+.+.++
T Consensus 6 ~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (211)
T cd03225 6 SFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVLVDGKDLTKLSLKELRRKVGLVFQ 82 (211)
T ss_pred EEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEcccCCHHHHHhhceEEec
Confidence 335544112478999988776 9999999999999999999998743 11111000 112222233
Q ss_pred Ccc-ccCCceeEeecCCCCCCcccccccch-------hhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccCh
Q 009050 244 DDR-SIPGNTVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDF 310 (545)
Q Consensus 244 ~~~-~~~g~t~~~~~~~~~~gl~~~~~~~~-------~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~ 310 (545)
... ..+..++ ..+... ..........++++.+.+- + .|+.+| |++|++.
T Consensus 83 ~~~~~~~~~t~-------------~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~----- 144 (211)
T cd03225 83 NPDDQFFGPTV-------------EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVA----- 144 (211)
T ss_pred ChhhhcCCCcH-------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH-----
Confidence 211 1111111 111100 0001112233445555543 2 567788 8999998
Q ss_pred HHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 311 ~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|.
T Consensus 145 --laral~~~p~llllDEPt~~LD~~~---~~~~~~~l~~~~~~~~tvi~~sH~ 193 (211)
T cd03225 145 --IAGVLAMDPDILLLDEPTAGLDPAG---RRELLELLKKLKAEGKTIIIVTHD 193 (211)
T ss_pred --HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHcCCEEEEEeCC
Confidence 89999999999998 566653 566777887776667788888773
No 281
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=4.6e-11 Score=125.35 Aligned_cols=164 Identities=20% Similarity=0.261 Sum_probs=102.2
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CC------CCCCCCcccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GA------HIGPEPTTDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~------~v~~~p~t~r~~i~~~~~~~~ 246 (545)
+++.|++. .++++++|+..+ +++|+|++|||||||+++|+|...| |. .+...| ..+..+.+.+++..
T Consensus 25 v~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~vfQ~~~ 101 (377)
T PRK11607 25 LTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PYQRPINMMFQSYA 101 (377)
T ss_pred EEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HHHCCEEEEeCCCc
Confidence 34456553 378888888765 9999999999999999999999865 11 111111 12334566666666
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
..++.|+..+..+.+. ..+ ..+.+......++++.+.+.+ .|..+| |++||++ ++++++.+|
T Consensus 102 lfp~ltv~eNi~~~l~---~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVa-------LARAL~~~P 168 (377)
T PRK11607 102 LFPHMTVEQNIAFGLK---QDK---LPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVA-------LARSLAKRP 168 (377)
T ss_pred cCCCCCHHHHHHHHHH---HcC---CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHhcCC
Confidence 6665554222111110 000 011122233445566666543 677788 8999999 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHh-cCCCeEEEEecC
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNK 359 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~-~~~~~iiiVlNK 359 (545)
+++|+ .+|+.. ...+...+..+. +.+.++++|.|.
T Consensus 169 ~lLLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tii~vTHd 209 (377)
T PRK11607 169 KLLLLDEPMGALDKKL---RDRMQLEVVDILERVGVTCVMVTHD 209 (377)
T ss_pred CEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 99998 566542 445555565553 457888888883
No 282
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.15 E-value=4.7e-11 Score=117.62 Aligned_cols=166 Identities=20% Similarity=0.246 Sum_probs=94.7
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCC-----cccceEEEEeCCCccc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEP-----TTDRFVVVMSGVDDRS 247 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p-----~t~r~~i~~~~~~~~~ 247 (545)
++.|++ ..++++++|+..+ +++|+|++|||||||++.|+|...| |.+. ...+ ...+..+.+.+++...
T Consensus 8 ~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~ 85 (236)
T TIGR03864 8 SFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTL 85 (236)
T ss_pred EEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCC
Confidence 345554 3488999988776 9999999999999999999998753 1110 0000 0001123333332222
Q ss_pred cCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCC
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aD 322 (545)
.+..++..+..... .. .+ ...........++++.+.+- | .++.+| |++|++. ++++++.+|+
T Consensus 86 ~~~~t~~~~l~~~~-~~--~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~-------laral~~~p~ 152 (236)
T TIGR03864 86 DLDLSVRQNLRYHA-AL--HG---LSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVE-------IARALLHRPA 152 (236)
T ss_pred cccCcHHHHHHHHH-Hh--cC---CCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-------HHHHHhcCCC
Confidence 22211100000000 00 00 00001112233445555443 2 456677 8999988 8999999999
Q ss_pred EEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 323 LILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 323 liLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
++|+ .+|+.. ...+.+++..+.+ .+..++++.|..+
T Consensus 153 llllDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 153 LLLLDEPTVGLDPAS---RAAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred EEEEcCCccCCCHHH---HHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 9999 566653 4667777877764 4678888888554
No 283
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.15 E-value=6.1e-11 Score=108.01 Aligned_cols=162 Identities=23% Similarity=0.354 Sum_probs=108.3
Q ss_pred EEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCC-----Cccc--------------
Q 009050 179 YRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPE-----PTTD-------------- 234 (545)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~-----p~t~-------------- 234 (545)
+.|+... +++++++.... +|.|+|.+|+|||||++++.-.+.| |.+ ++.+ +...
T Consensus 14 K~~G~~e--VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 14 KRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred hhcccch--hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 3677643 88999988776 9999999999999999999877755 111 1110 0000
Q ss_pred ceEEEEeCCCccccCCceeEee---cCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhh
Q 009050 235 RFVVVMSGVDDRSIPGNTVAVQ---ADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQR 306 (545)
Q Consensus 235 r~~i~~~~~~~~~~~g~t~~~~---~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~ 306 (545)
|....|.++.+..+..+|+..+ .....-| .++.+..+.+..+|..+.+.+ .|..+| |++||++
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg--------~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~a- 162 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG--------VSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVA- 162 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchHhhc--------CCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHH-
Confidence 1112233333333333332100 0000001 234456667778888999887 899999 6888888
Q ss_pred ccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 307 ~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
+||+++-+|+++|| .+|+. +..++..+++.|.+.|.+.++|.+-+
T Consensus 163 ------IARaLameP~vmLFDEPTSALDPE---lVgEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 163 ------IARALAMEPEVMLFDEPTSALDPE---LVGEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred ------HHHHHhcCCceEeecCCcccCCHH---HHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 99999999999998 45553 46788899999999999999998844
No 284
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.15 E-value=8.2e-11 Score=117.38 Aligned_cols=160 Identities=24% Similarity=0.365 Sum_probs=95.0
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCc-ccceEEEEeCCCccccCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPT-TDRFVVVMSGVDDRSIPG 250 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~-t~r~~i~~~~~~~~~~~g 250 (545)
+++.|++ ..++++++|...+ +++|+|+||||||||++.|+|...| |.+. +..+. ..+..+.+.++.....+.
T Consensus 18 l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~ 95 (257)
T PRK11247 18 VSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPW 95 (257)
T ss_pred EEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCC
Confidence 3446665 3488999988776 9999999999999999999998743 1110 11110 011223333443322222
Q ss_pred ceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEE
Q 009050 251 NTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (545)
Q Consensus 251 ~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliL 325 (545)
.++..+..+.+. . ........+++.+.+-+ .|+.+| |++|++. ++++++.+|+++|
T Consensus 96 ~tv~enl~~~~~----------~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~-------laraL~~~p~lll 156 (257)
T PRK11247 96 KKVIDNVGLGLK----------G--QWRDAALQALAAVGLADRANEWPAALSGGQKQRVA-------LARALIHRPGLLL 156 (257)
T ss_pred CcHHHHHHhccc----------c--hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHHHHhcCCCEEE
Confidence 222100000000 0 01112334455555532 567778 8999988 8999999999999
Q ss_pred E-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 326 L-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 326 l-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
+ .+|+.. ...+.+++..+.. .+..++++.|..
T Consensus 157 LDEPt~~LD~~~---~~~l~~~L~~~~~~~~~tviivsHd~ 194 (257)
T PRK11247 157 LDEPLGALDALT---RIEMQDLIESLWQQHGFTVLLVTHDV 194 (257)
T ss_pred EeCCCCCCCHHH---HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 8 556543 4566677777643 467888888843
No 285
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=7.1e-11 Score=116.13 Aligned_cols=156 Identities=21% Similarity=0.289 Sum_probs=94.3
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc---------c-ceEEEEeCCCccccCCc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT---------D-RFVVVMSGVDDRSIPGN 251 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t---------~-r~~i~~~~~~~~~~~g~ 251 (545)
.++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+.+ . +..+.+.+++....++.
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF 102 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC
Confidence 489999998877 9999999999999999999998743 110 0011100 0 12244444443333322
Q ss_pred eeEeecCCC--CCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEE
Q 009050 252 TVAVQADMP--FSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (545)
Q Consensus 252 t~~~~~~~~--~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDli 324 (545)
++..+..+. +.+. ..........++++.+.+-+ .|+.+| |++|++. ++++++.+|+++
T Consensus 103 tv~e~l~~~~~~~~~--------~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~-------la~al~~~p~ll 167 (233)
T PRK11629 103 TALENVAMPLLIGKK--------KPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVA-------IARALVNNPRLV 167 (233)
T ss_pred CHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------HHHHHhcCCCEE
Confidence 221110000 0000 01111223345555665533 456677 8999988 899999999999
Q ss_pred EE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 325 LL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 325 Ll-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
|+ .+|+.. ...+.+++..+.. .+..++++.|..
T Consensus 168 lLDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 168 LADEPTGNLDARN---ADSIFQLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred EEeCCCCCCCHHH---HHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 99 566643 5667788888764 477888888843
No 286
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.14 E-value=1e-10 Score=112.94 Aligned_cols=165 Identities=17% Similarity=0.191 Sum_probs=96.4
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCcc---ccCCce
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR---SIPGNT 252 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~---~~~g~t 252 (545)
++.|+. ..++++++|+..+ +++|+|++|+|||||++.|+|...| .++. +.+.+.... ...+..
T Consensus 9 ~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~-------i~~~g~~~~~~~~~~~~~ 76 (207)
T PRK13539 9 ACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGT-------IKLDGGDIDDPDVAEACH 76 (207)
T ss_pred EEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCce-------EEECCEeCcchhhHhhcE
Confidence 445655 3488999998776 9999999999999999999998743 2221 111111000 001111
Q ss_pred eEeecCCCCCCccccccc-chhhh--hhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEE
Q 009050 253 VAVQADMPFSGLTTFGTA-FLSKF--ECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (545)
Q Consensus 253 ~~~~~~~~~~gl~~~~~~-~~~~~--~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDli 324 (545)
...+....+.......+. +.... .......++++.+.+. + .++.+| |++|++. ++++++.+|+++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~ll 149 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVA-------LARLLVSNRPIW 149 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHH-------HHHHHhcCCCEE
Confidence 111111111111111111 00000 0011133455555543 2 456777 7999988 899999999999
Q ss_pred EE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCC
Q 009050 325 LL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (545)
Q Consensus 325 Ll-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~ 364 (545)
|+ .+|+.. ...+.+++..+.+.+..++++.|..+.+.
T Consensus 150 llDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 191 (207)
T PRK13539 150 ILDEPTAALDAAA---VALFAELIRAHLAQGGIVIAATHIPLGLP 191 (207)
T ss_pred EEeCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEeCCchhhc
Confidence 98 566543 56677788877666788999999777554
No 287
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.14 E-value=8.8e-11 Score=114.45 Aligned_cols=162 Identities=22% Similarity=0.243 Sum_probs=93.6
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCcc-------cceEEEEeCCCc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPTT-------DRFVVVMSGVDD 245 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~t-------~r~~i~~~~~~~ 245 (545)
++.|++. +++++++|+..+ +++|+|++|||||||++.|+|...| |.+. ...+.. .+..+.+.++..
T Consensus 7 ~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (222)
T cd03224 7 NAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGR 84 (222)
T ss_pred EeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEecccc
Confidence 3456543 488999988776 9999999999999999999998753 1110 010000 012234444443
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCce-e---ec-CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHIT-L---VD-TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~-l---iD-TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
...++.|+..+...... .............+++.+. + .| .++.+| |++|++. ++++++.
T Consensus 85 ~~~~~~t~~~~l~~~~~--------~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~ 149 (222)
T cd03224 85 RIFPELTVEENLLLGAY--------ARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLA-------IARALMS 149 (222)
T ss_pred ccCCCCcHHHHHHHHhh--------hcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHH-------HHHHHhc
Confidence 33333232110000000 0000001111222333331 2 23 345667 8999988 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+|+++|+ .+|+.. ...+.+++..+...+..++++.|.
T Consensus 150 ~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~sH~ 191 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKI---VEEIFEAIRELRDEGVTILLVEQN 191 (222)
T ss_pred CCCEEEECCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEeCC
Confidence 9999999 566653 567778888877667788888773
No 288
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=3.8e-11 Score=124.77 Aligned_cols=158 Identities=22% Similarity=0.292 Sum_probs=94.5
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc---------cceEEEEeCCCccccCCce
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT---------DRFVVVMSGVDDRSIPGNT 252 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t---------~r~~i~~~~~~~~~~~g~t 252 (545)
.++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+-+ .+..+.+.+++....+..+
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~t 98 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCc
Confidence 589999998877 9999999999999999999998854 111 0111100 0223444444433333222
Q ss_pred eEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-
Q 009050 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL- 326 (545)
Q Consensus 253 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl- 326 (545)
+..+..+.. ...+ ...........++++.+.+-+ .|+.+| |++||+. +|++++.+|+++|+
T Consensus 99 v~eni~~~~---~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~-------lAraL~~~p~iLlLD 165 (343)
T PRK11153 99 VFDNVALPL---ELAG---TPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVA-------IARALASNPKVLLCD 165 (343)
T ss_pred HHHHHHHHH---HHcC---CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEe
Confidence 211000000 0000 001111122344555555533 457778 8999998 89999999999998
Q ss_pred ----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 327 ----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 327 ----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
.+|+.. ...+.+++..+.. .+..++++.|..
T Consensus 166 EPts~LD~~~---~~~l~~~L~~l~~~~g~tiilvtH~~ 201 (343)
T PRK11153 166 EATSALDPAT---TRSILELLKDINRELGLTIVLITHEM 201 (343)
T ss_pred CCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 566643 5667778887755 377888888843
No 289
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.14 E-value=3.6e-11 Score=117.02 Aligned_cols=158 Identities=22% Similarity=0.233 Sum_probs=92.5
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc-----cceEEEEeCCCccc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT-----DRFVVVMSGVDDRS 247 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t-----~r~~i~~~~~~~~~ 247 (545)
++.|+.....++++++|+..+ +++|+|+||||||||++.|+|...| |.+ ..+.+.+ .+..+.+.++....
T Consensus 7 ~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~ 86 (220)
T cd03263 7 TKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDAL 86 (220)
T ss_pred EEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCc
Confidence 345643113488999988877 9999999999999999999998753 110 0000100 01123333332222
Q ss_pred cCCceeEeecCCCCCCccccccc-ch------hhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHH
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTA-FL------SKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~-~~------~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~ 315 (545)
.+..++ ..+. +. ..........++++.+.+. | .++.+| |++|++. +++
T Consensus 87 ~~~~tv-------------~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~ 146 (220)
T cd03263 87 FDELTV-------------REHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLS-------LAI 146 (220)
T ss_pred cccCCH-------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHH-------HHH
Confidence 211111 1110 00 0001112234455555553 3 356677 8999988 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+++.+|+++|+ .+|+.. ...+.+++..+.+ +..++++.|.
T Consensus 147 al~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tii~~sH~ 191 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPAS---RRAIWDLILEVRK-GRSIILTTHS 191 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHH---HHHHHHHHHHHhc-CCEEEEEcCC
Confidence 99999999998 566543 4667777877765 4677777774
No 290
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=5.9e-11 Score=109.57 Aligned_cols=166 Identities=17% Similarity=0.263 Sum_probs=102.8
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEE-------EEeCCCccc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVV-------VMSGVDDRS 247 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i-------~~~~~~~~~ 247 (545)
.+..|......++++++++..+ .|+++||+|||||||+|.+.|.-.| .....+-....+ ...+|++..
T Consensus 9 ~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P---~~G~i~l~~r~i~gPgaergvVFQ~~~L 85 (259)
T COG4525 9 LSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP---SRGSIQLNGRRIEGPGAERGVVFQNEAL 85 (259)
T ss_pred eEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc---ccceEEECCEeccCCCccceeEeccCcc
Confidence 3446777656789999999877 9999999999999999999998854 222111111111 122344444
Q ss_pred cCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCC----CCCC-hhhhhhhhccChHHHHHHHhcCCC
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTP----GVLS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTP----G~~s-gekq~v~~~~~~~~ia~~~~~~aD 322 (545)
.|..++..+..+ |+.-.| +.+.+....+++.|..+.+-|+- =.+| |++||+. +||+++-+||
T Consensus 86 lPWl~~~dNvaf---gL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvG-------iARALa~eP~ 152 (259)
T COG4525 86 LPWLNVIDNVAF---GLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVG-------IARALAVEPQ 152 (259)
T ss_pred chhhHHHHHHHH---HHHhcC---CCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHH-------HHHHhhcCcc
Confidence 443333111111 111111 22334445566677777777643 3345 7899988 8999999999
Q ss_pred EEEE-----EeCCCCCCccHHHHHHHH-HHhcCCCeEEEEecCCC
Q 009050 323 LILL-----LFDPHKLDISDEFKRVIT-SLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 323 liLl-----vlD~~~~~~~~~~~~~l~-~L~~~~~~iiiVlNK~D 361 (545)
++++ .+|+-. .+...+++- ..+..++.+++|.|.++
T Consensus 153 ~LlLDEPfgAlDa~t---Re~mQelLldlw~~tgk~~lliTH~ie 194 (259)
T COG4525 153 LLLLDEPFGALDALT---REQMQELLLDLWQETGKQVLLITHDIE 194 (259)
T ss_pred eEeecCchhhHHHHH---HHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 9998 566542 344445443 34667889999988443
No 291
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.14 E-value=1.1e-10 Score=112.31 Aligned_cols=156 Identities=22% Similarity=0.225 Sum_probs=95.1
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc----------------ceEEE
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD----------------RFVVV 239 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~----------------r~~i~ 239 (545)
.+.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| .+++.... +..+.
T Consensus 5 ~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 5 SKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF---DSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred EEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccchhhHHHHHHhCee
Confidence 345654 3488999988776 9999999999999999999998743 11111000 11223
Q ss_pred EeCCCccccCCceeEeecCCCCCCcccccccch-------hhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhc
Q 009050 240 MSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRA 307 (545)
Q Consensus 240 ~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~-------~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~ 307 (545)
+.++.....++.++ ..+..+ .+........++++.+.+- | .++.+| |++|++.
T Consensus 80 ~~~q~~~~~~~~t~-------------~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~-- 144 (206)
T TIGR03608 80 YLFQNFALIENETV-------------EENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVA-- 144 (206)
T ss_pred EEecchhhccCCcH-------------HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHH--
Confidence 33332222222221 111100 0011112233445555442 3 345666 8999988
Q ss_pred cChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 308 ~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
++++++.+|+++|+ .+|+.. ...+.++++.+.+.+..++++.|..+
T Consensus 145 -----laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 145 -----LARAILKDPPLILADEPTGSLDPKN---RDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred -----HHHHHHcCCCEEEEeCCcCCCCHHH---HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 89999999999999 666643 56677888877666778888888643
No 292
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.14 E-value=1.1e-10 Score=111.07 Aligned_cols=151 Identities=23% Similarity=0.296 Sum_probs=91.5
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc--------------ceEEEEeCCCccccCC
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD--------------RFVVVMSGVDDRSIPG 250 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~--------------r~~i~~~~~~~~~~~g 250 (545)
.++++++|+..+ +++|+|+||||||||+++|+|...| .++..... +..+.+.+++...
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~--- 79 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP---QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDD--- 79 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceeEEECCEEccccccchHHHHhhEEEEecChhh---
Confidence 478888887776 9999999999999999999998753 11111000 1112222322110
Q ss_pred ceeEeecCCCCCCcccccccch-------hhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 251 NTVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 251 ~t~~~~~~~~~~gl~~~~~~~~-------~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
..+ ......+..+ ...........+++.+.+- | .|+.+| |++|++. ++++++
T Consensus 80 --------~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~ 143 (190)
T TIGR01166 80 --------QLF-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVA-------IAGAVA 143 (190)
T ss_pred --------ccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHH-------HHHHHh
Confidence 001 1111111100 0001112233444455443 3 457777 8999988 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQ 362 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~ 362 (545)
.+|+++|+ .+|+.. ...+.+++..+++.+..++++.|..+.
T Consensus 144 ~~p~llllDEPt~~LD~~~---~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 144 MRPDVLLLDEPTAGLDPAG---REQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred cCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999998 566643 566778888877667889999887664
No 293
>PRK10908 cell division protein FtsE; Provisional
Probab=99.14 E-value=6.1e-11 Score=115.69 Aligned_cols=159 Identities=23% Similarity=0.270 Sum_probs=91.2
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCC-cc--------cceEEEEeCCCccccCCce
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEP-TT--------DRFVVVMSGVDDRSIPGNT 252 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p-~t--------~r~~i~~~~~~~~~~~g~t 252 (545)
.++++++|+..+ +++|+|+||||||||++.|+|...| |.+. .... .. .+..+.+.+++....+..+
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRT 95 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccccc
Confidence 488999988876 9999999999999999999998753 1110 0000 00 0122333333322222222
Q ss_pred eEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-
Q 009050 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL- 326 (545)
Q Consensus 253 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl- 326 (545)
+..+.... ....+ ............+++.+.+. + .|+.+| |++|++. ++++++.+|+++|+
T Consensus 96 v~~~l~~~---~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~llllD 162 (222)
T PRK10908 96 VYDNVAIP---LIIAG---ASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVG-------IARAVVNKPAVLLAD 162 (222)
T ss_pred HHHHHHhH---HHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHH-------HHHHHHcCCCEEEEe
Confidence 10000000 00000 00001111223444555443 2 467777 8999988 89999999999988
Q ss_pred ----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 327 ----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 327 ----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
.+|+.. ...+.+++..++..+..++++.|..+
T Consensus 163 EPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (222)
T PRK10908 163 EPTGNLDDAL---SEGILRLFEEFNRVGVTVLMATHDIG 198 (222)
T ss_pred CCCCcCCHHH---HHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 566543 45677778887666778888888433
No 294
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=9.6e-11 Score=115.67 Aligned_cols=171 Identities=22% Similarity=0.239 Sum_probs=95.7
Q ss_pred EEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc---------ccceEEEEeCCC
Q 009050 179 YRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT---------TDRFVVVMSGVD 244 (545)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~---------t~r~~i~~~~~~ 244 (545)
+.|++. ..++++++|+..+ +++|+|++|||||||++.|+|...| |.+ +.+.+. ..+..+.+.+++
T Consensus 8 ~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~ 86 (241)
T cd03256 8 KTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQ 86 (241)
T ss_pred EecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEccc
Confidence 355431 2478999888877 9999999999999999999998753 111 001110 012234444444
Q ss_pred ccccCCceeEeecCCCCCCcc-cccccc-hhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 245 DRSIPGNTVAVQADMPFSGLT-TFGTAF-LSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~-~~~~~~-~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
....+..++..+......... .....+ ...........++++.+.+- | .++.+| |++|++. +++++
T Consensus 87 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al 159 (241)
T cd03256 87 FNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVA-------IARAL 159 (241)
T ss_pred CcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHH-------HHHHH
Confidence 333333332111000000000 000000 00001112233445555443 3 456677 8999998 89999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
+.+|+++|+ .+|+.. ...+.+++..+.. .+..++++.|..
T Consensus 160 ~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tii~~tH~~ 205 (241)
T cd03256 160 MQQPKLILADEPVASLDPAS---SRQVMDLLKRINREEGITVIVSLHQV 205 (241)
T ss_pred hcCCCEEEEeCccccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999998 566643 4566777877754 477888888843
No 295
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.14 E-value=8.1e-11 Score=114.04 Aligned_cols=159 Identities=19% Similarity=0.289 Sum_probs=95.0
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCC-cc--------cceEEEEeCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEP-TT--------DRFVVVMSGV 243 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p-~t--------~r~~i~~~~~ 243 (545)
++.|+.. ..++++++|+..+ +++|+|++|||||||++.|+|...| |.+. ...+ .+ .+..+.+.++
T Consensus 7 ~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q 85 (214)
T cd03292 7 TKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQ 85 (214)
T ss_pred EEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEec
Confidence 4456431 3488999998877 9999999999999999999998743 1100 0000 00 0112333333
Q ss_pred CccccCCceeEeecCCCCCCcccccccch-------hhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChH
Q 009050 244 DDRSIPGNTVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFT 311 (545)
Q Consensus 244 ~~~~~~g~t~~~~~~~~~~gl~~~~~~~~-------~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~ 311 (545)
+....++.++ ..+... ..........++++.+.+- | .|+.+| |++|++.
T Consensus 86 ~~~~~~~~t~-------------~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~------ 146 (214)
T cd03292 86 DFRLLPDRNV-------------YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVA------ 146 (214)
T ss_pred CchhccCCcH-------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHH------
Confidence 3322222222 111100 0001111233445555443 2 456777 8999988
Q ss_pred HHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 312 ~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|..
T Consensus 147 -laral~~~p~llllDEPt~~LD~~~---~~~~~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 147 -IARAIVNSPTILIADEPTGNLDPDT---TWEIMNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred -HHHHHHcCCCEEEEeCCCCcCCHHH---HHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 89999999999998 566653 5667788888766677888888843
No 296
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=7.6e-11 Score=117.48 Aligned_cols=171 Identities=22% Similarity=0.338 Sum_probs=98.2
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc-------cceEEEEeCCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT-------DRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t-------~r~~i~~~~~~ 244 (545)
+++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+.. .+..+.+.++.
T Consensus 11 l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 88 (255)
T PRK11300 11 LMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQH 88 (255)
T ss_pred EEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccC
Confidence 3445654 3489999988876 9999999999999999999998754 110 0011100 11224444555
Q ss_pred ccccCCceeEeecCCC---------CCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccCh
Q 009050 245 DRSIPGNTVAVQADMP---------FSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDF 310 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~---------~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~ 310 (545)
....++.++..+.... +.++.......-...........+++.+.+- | .++.+| |++|++.
T Consensus 89 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~----- 163 (255)
T PRK11300 89 VRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE----- 163 (255)
T ss_pred cccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHH-----
Confidence 4444443331110000 0000000000000001111233444555443 2 456677 8999988
Q ss_pred HHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecC
Q 009050 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNK 359 (545)
Q Consensus 311 ~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+++. +..++++.|.
T Consensus 164 --la~al~~~p~llllDEPt~~LD~~~---~~~l~~~L~~~~~~~~~tii~~sH~ 213 (255)
T PRK11300 164 --IARCMVTQPEILMLDEPAAGLNPKE---TKELDELIAELRNEHNVTVLLIEHD 213 (255)
T ss_pred --HHHHHhcCCCEEEEcCCccCCCHHH---HHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 89999999999999 566653 56677788877664 7788888884
No 297
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.14 E-value=8.6e-11 Score=116.18 Aligned_cols=171 Identities=22% Similarity=0.254 Sum_probs=97.4
Q ss_pred eEEeC-CcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCC-c--------ccceEEEEeC
Q 009050 178 TYRFN-DFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEP-T--------TDRFVVVMSG 242 (545)
Q Consensus 178 ~~~~~-~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p-~--------t~r~~i~~~~ 242 (545)
++.|+ + ..++++++|+..+ +++|+|++|||||||++.|+|...| |.+. .+.+ . ..+..+.+.+
T Consensus 8 ~~~~~~~--~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~ 85 (243)
T TIGR02315 8 SKVYPNG--KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIF 85 (243)
T ss_pred eeecCCC--cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEc
Confidence 34555 3 3489999998877 9999999999999999999998753 1110 0000 0 0122344555
Q ss_pred CCccccCCceeEeecCCCCCCcc-cccccc-hhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHH
Q 009050 243 VDDRSIPGNTVAVQADMPFSGLT-TFGTAF-LSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 243 ~~~~~~~g~t~~~~~~~~~~gl~-~~~~~~-~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~ 315 (545)
+.....+..++..+......... .....+ ...........++++.+.+. | .+..+| |++|++. +++
T Consensus 86 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~ 158 (243)
T TIGR02315 86 QHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVA-------IAR 158 (243)
T ss_pred CCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH-------HHH
Confidence 54444443333111110000000 000000 00001112233444455443 3 456677 8999998 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
+++.+|+++|+ .+|+.. ...+.+++..+.. .+..++++.|..
T Consensus 159 al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tiii~tH~~ 206 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKT---SKQVMDYLKRINKEDGITVIINLHQV 206 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 99999999998 566643 4566777777754 367888888843
No 298
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.13 E-value=1.3e-10 Score=111.86 Aligned_cols=159 Identities=16% Similarity=0.241 Sum_probs=94.6
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc-----------ceEEEEeCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-----------RFVVVMSGV 243 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-----------r~~i~~~~~ 243 (545)
.++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...| .++...-. +..+.+..+
T Consensus 7 l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 7 LACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred EEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEcccchHHhhhheEEeCC
Confidence 3345655 3488999998877 9999999999999999999998753 22211100 011111111
Q ss_pred CccccCCceeEeecCCCCCCccccccc-chhhh---hhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHH
Q 009050 244 DDRSIPGNTVAVQADMPFSGLTTFGTA-FLSKF---ECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVT 314 (545)
Q Consensus 244 ~~~~~~g~t~~~~~~~~~~gl~~~~~~-~~~~~---~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia 314 (545)
.....+ .+....+. +.... ........+++.+.+. | .++.+| |++|++. ++
T Consensus 82 ~~~~~~-------------~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~-------la 141 (204)
T PRK13538 82 QPGIKT-------------ELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVA-------LA 141 (204)
T ss_pred ccccCc-------------CCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHH-------HH
Confidence 111111 11111111 00000 1112233455555553 3 345667 8999988 89
Q ss_pred HHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCC
Q 009050 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (545)
Q Consensus 315 ~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~ 363 (545)
++++.+|+++|+ .+|+.. ...+.+++..++..+.+++++.|..+.+
T Consensus 142 ~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~sh~~~~i 192 (204)
T PRK13538 142 RLWLTRAPLWILDEPFTAIDKQG---VARLEALLAQHAEQGGMVILTTHQDLPV 192 (204)
T ss_pred HHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHHCCCEEEEEecChhhh
Confidence 999999999998 555543 4566677777766677888888865544
No 299
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.13 E-value=8e-11 Score=114.69 Aligned_cols=159 Identities=20% Similarity=0.291 Sum_probs=93.1
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCcc-----c-----ceEEEEeCCCccccCCc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPTT-----D-----RFVVVMSGVDDRSIPGN 251 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~t-----~-----r~~i~~~~~~~~~~~g~ 251 (545)
+++++++|+..+ +++|+|+||||||||++.|+|...| |.+. ...+-+ . +..+.+.++.....+..
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 488998888776 9999999999999999999998753 1110 011100 0 12234444433323222
Q ss_pred eeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE
Q 009050 252 TVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (545)
Q Consensus 252 t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl 326 (545)
++..+..+... . .. ...........++++.+.+- | .|+.+| |++|++. ++++++.+|+++|+
T Consensus 99 tv~~~l~~~~~-~---~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~illl 165 (221)
T TIGR02211 99 TALENVAMPLL-I---GK--KSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVA-------IARALVNQPSLVLA 165 (221)
T ss_pred cHHHHHHHHHH-h---cC--CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HHHHHhCCCCEEEE
Confidence 22100000000 0 00 00011112233455555553 2 457778 8999998 89999999999998
Q ss_pred -----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 327 -----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 327 -----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
.+|+.. ...+.+++..+.. .+..++++.|..+
T Consensus 166 DEPt~~LD~~~---~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 166 DEPTGNLDNNN---AKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred eCCCCcCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 566653 4667777877764 4678888888543
No 300
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=1.4e-10 Score=113.06 Aligned_cols=147 Identities=21% Similarity=0.269 Sum_probs=90.5
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc-------ccceEEEEeCCCccccCCceeEeec
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT-------TDRFVVVMSGVDDRSIPGNTVAVQA 257 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~-------t~r~~i~~~~~~~~~~~g~t~~~~~ 257 (545)
.++++++|+..+ +++|+|+||||||||++.|+|...| .++... ..+..+.+.++.....+..++
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv---- 90 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTV---- 90 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECccccCcEEEEecccccccCCCH----
Confidence 488999988776 9999999999999999999998743 111110 011122333332222221111
Q ss_pred CCCCCCccccccc-ch------hhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEE
Q 009050 258 DMPFSGLTTFGTA-FL------SKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (545)
Q Consensus 258 ~~~~~gl~~~~~~-~~------~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliL 325 (545)
..+. +. ...........+++.+.+. + .|+.+| |++|++. ++++++.+|+++|
T Consensus 91 ---------~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~-------la~al~~~p~lll 154 (220)
T cd03293 91 ---------LDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVA-------LARALAVDPDVLL 154 (220)
T ss_pred ---------HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH-------HHHHHHcCCCEEE
Confidence 1111 00 0001112234455555553 2 567778 8999988 8999999999999
Q ss_pred E-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 326 L-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 326 l-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
+ .+|+.. ...+.+++..+.. .+..++++.|.
T Consensus 155 LDEPt~~LD~~~---~~~~~~~l~~~~~~~~~tiii~sH~ 191 (220)
T cd03293 155 LDEPFSALDALT---REQLQEELLDIWRETGKTVLLVTHD 191 (220)
T ss_pred ECCCCCCCCHHH---HHHHHHHHHHHHHHcCCEEEEEecC
Confidence 8 566643 5667777877743 46788888874
No 301
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=1.3e-10 Score=114.81 Aligned_cols=169 Identities=24% Similarity=0.290 Sum_probs=95.9
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc----ccceEEEEeCCCccc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT----TDRFVVVMSGVDDRS 247 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~----t~r~~i~~~~~~~~~ 247 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+. ..+..+.+.++....
T Consensus 8 l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~ 85 (239)
T cd03296 8 VSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYAL 85 (239)
T ss_pred EEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcc
Confidence 3446655 3489999988776 9999999999999999999998753 110 001000 001223333443333
Q ss_pred cCCceeEeecCCCCCCcccccc-cchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 248 IPGNTVAVQADMPFSGLTTFGT-AFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~-~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
.++.++..+..+... . .+. ..............+++.+.+- + .|+.+| |++|++. ++++++.+|
T Consensus 86 ~~~~tv~e~l~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~~p 155 (239)
T cd03296 86 FRHMTVFDNVAFGLR-V--KPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVA-------LARALAVEP 155 (239)
T ss_pred cCCCCHHHHHhhhhh-h--ccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH-------HHHHHhcCC
Confidence 322222100000000 0 000 0000001111223445555442 3 456777 8999998 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
+++|+ .+|+.. ...+.+++..+... +..++++.|..
T Consensus 156 ~llllDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tvii~sH~~ 197 (239)
T cd03296 156 KVLLLDEPFGALDAKV---RKELRRWLRRLHDELHVTTVFVTHDQ 197 (239)
T ss_pred CEEEEcCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 99998 566643 45667777777653 67888888843
No 302
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.13 E-value=1e-10 Score=112.58 Aligned_cols=159 Identities=19% Similarity=0.266 Sum_probs=93.2
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCc---ccceEEEEeCCCccccC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPT---TDRFVVVMSGVDDRSIP 249 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~---t~r~~i~~~~~~~~~~~ 249 (545)
++.|+.. ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+. ...+. ..+..+.+.+++...
T Consensus 6 ~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~-- 82 (205)
T cd03226 6 SFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDY-- 82 (205)
T ss_pred EEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhh--
Confidence 3455541 2488999888766 9999999999999999999998753 1110 00000 001123333332210
Q ss_pred CceeEeecCCCCCCcccccccch-hhh--hhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 250 GNTVAVQADMPFSGLTTFGTAFL-SKF--ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 250 g~t~~~~~~~~~~gl~~~~~~~~-~~~--~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
.+......++... ... .......++++.+.+-+ .|+.+| |++|++. ++++++.+|
T Consensus 83 ----------~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p 145 (205)
T cd03226 83 ----------QLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLA-------IAAALLSGK 145 (205)
T ss_pred ----------hhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHH-------HHHHHHhCC
Confidence 0001111111000 000 00112334555555533 567777 8999998 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+++|+ .+|+.. ...+.+++..+...+..++++.|.
T Consensus 146 ~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~sH~ 185 (205)
T cd03226 146 DLLIFDEPTSGLDYKN---MERVGELIRELAAQGKAVIVITHD 185 (205)
T ss_pred CEEEEeCCCccCCHHH---HHHHHHHHHHHHHCCCEEEEEeCC
Confidence 99998 566543 566777888776667788888884
No 303
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.13 E-value=8e-10 Score=105.64 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=45.8
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEEEEecCCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIRVVLNKADQV 363 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~iiiVlNK~D~~ 363 (545)
.+.||||+|... .. ...+..++|++|+++|.++....+... .|+..++. .+.|+++|.||+|+.
T Consensus 67 ~l~iwDTaG~~~----~~---------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 67 SLRLWDTFGDHD----KD---------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred EEEEEeCCCChh----hh---------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 788999999832 11 123468999999999998743334443 36665543 357999999999986
Q ss_pred C
Q 009050 364 D 364 (545)
Q Consensus 364 ~ 364 (545)
+
T Consensus 134 ~ 134 (195)
T cd01873 134 Y 134 (195)
T ss_pred c
Confidence 3
No 304
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.13 E-value=1.2e-10 Score=111.84 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=90.6
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc-----------cceEEEEeCCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT-----------DRFVVVMSGVD 244 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t-----------~r~~i~~~~~~ 244 (545)
++.|+. ...+++++|+..+ +++|+|+||+|||||++.|+|...| .++.... .+..+.+.++.
T Consensus 7 ~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (201)
T cd03231 7 TCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP---LAGRVLLNGGPLDFQRDSIARGLLYLGHA 81 (201)
T ss_pred EEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccccHHhhhheEEeccc
Confidence 345654 3478999888766 9999999999999999999998743 1111100 01112222222
Q ss_pred ccccCCceeEeecCCCCCCccccccc-chhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTA-FLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~-~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
....+..+ ..++. +............+++.+.+- + .++.+| |++|++. ++++++
T Consensus 82 ~~~~~~~t-------------v~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral~ 141 (201)
T cd03231 82 PGIKTTLS-------------VLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVA-------LARLLL 141 (201)
T ss_pred cccCCCcC-------------HHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHH-------HHHHHh
Confidence 11111111 11110 000000111223344444443 3 345566 7999988 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
.+|+++|+ .+|+.. ...+.+++..+...+..++++.|..+
T Consensus 142 ~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 142 SGRPLWILDEPTTALDKAG---VARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred cCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEecCch
Confidence 99999998 555543 45667777777666778888877443
No 305
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.13 E-value=3.4e-10 Score=108.91 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=67.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.|+|+|++|||||||+++|.+..++... +++. ..+. +..... .-.+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~----~s~~-~~~~------------~~~~~~--~~~~-------------- 47 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV----TSIE-PNVA------------TFILNS--EGKG-------------- 47 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc----CcEe-ecce------------EEEeec--CCCC--------------
Confidence 36899999999999999999987642111 1111 1110 000000 0001
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCC-CEEEEEeCCCCC-CccHHHHHHHHH----H--hcC
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKC-DLILLLFDPHKL-DISDEFKRVITS----L--RGH 349 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~a-DliLlvlD~~~~-~~~~~~~~~l~~----L--~~~ 349 (545)
..+.++||||... -+ .....++..+ +.+|+++|+... ....+..+++.. . ...
T Consensus 48 --------~~~~l~D~pG~~~---~~--------~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~ 108 (203)
T cd04105 48 --------KKFRLVDVPGHPK---LR--------DKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKN 108 (203)
T ss_pred --------ceEEEEECCCCHH---HH--------HHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccC
Confidence 2688999999742 11 1233446677 999999999863 111122222222 1 124
Q ss_pred CCeEEEEecCCCCCC
Q 009050 350 DDKIRVVLNKADQVD 364 (545)
Q Consensus 350 ~~~iiiVlNK~D~~~ 364 (545)
+.|+++|.||+|+..
T Consensus 109 ~~pvliv~NK~Dl~~ 123 (203)
T cd04105 109 KIPVLIACNKQDLFT 123 (203)
T ss_pred CCCEEEEecchhhcc
Confidence 789999999999874
No 306
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.13 E-value=1.2e-10 Score=112.66 Aligned_cols=166 Identities=26% Similarity=0.315 Sum_probs=94.1
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCc--------ccceEEEEeCCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPT--------TDRFVVVMSGVD 244 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~--------t~r~~i~~~~~~ 244 (545)
++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+. .+.+. ..+..+.+.+++
T Consensus 7 ~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 84 (213)
T cd03262 7 HKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQ 84 (213)
T ss_pred EEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecc
Confidence 445655 3488999988776 9999999999999999999998743 1110 00000 001223333333
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
....++.++..+........ .+ ...........++++.+.+. + .|+.+| |++|++. ++++++.
T Consensus 85 ~~~~~~~t~~e~l~~~~~~~--~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~ 152 (213)
T cd03262 85 FNLFPHLTVLENITLAPIKV--KG---MSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVA-------IARALAM 152 (213)
T ss_pred cccCCCCcHHHHHHhHHHHh--cC---CCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHH-------HHHHHhc
Confidence 22222222210000000000 00 00001112223444444442 2 446677 8999988 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
+|+++|+ .+|+.. ...+.+++..+++.+..++++.|..
T Consensus 153 ~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~~~~tvi~~sh~~ 195 (213)
T cd03262 153 NPKVMLFDEPTSALDPEL---VGEVLDVMKDLAEEGMTMVVVTHEM 195 (213)
T ss_pred CCCEEEEeCCccCCCHHH---HHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 9999998 555543 4567778888776677888887743
No 307
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.13 E-value=8.7e-11 Score=113.36 Aligned_cols=157 Identities=21% Similarity=0.219 Sum_probs=93.8
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc----ccceEEEEeCCCcccc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT----TDRFVVVMSGVDDRSI 248 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~----t~r~~i~~~~~~~~~~ 248 (545)
++.|+. .+++++++|+..+ +++|+|++|||||||++.|+|...| |.+ +...+. ..+..+.+.+++....
T Consensus 7 ~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 84 (208)
T cd03268 7 TKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFY 84 (208)
T ss_pred EEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccC
Confidence 345654 3589999998776 9999999999999999999998753 100 001110 0112233333332222
Q ss_pred CCceeEeecCCCCCCcccccccch-hhh--hhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 249 PGNTVAVQADMPFSGLTTFGTAFL-SKF--ECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 249 ~g~t~~~~~~~~~~gl~~~~~~~~-~~~--~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
+..++ ..+... ... ........+++.+.+. + .++.+| |++|++. ++++++.+
T Consensus 85 ~~~tv-------------~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~ 144 (208)
T cd03268 85 PNLTA-------------RENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLG-------IALALLGN 144 (208)
T ss_pred ccCcH-------------HHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHH-------HHHHHhcC
Confidence 22222 111100 000 0111223444555443 2 356677 8999988 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
|+++|+ .+|+.. ...+.+++..++..+..++++.|.
T Consensus 145 p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~tH~ 185 (208)
T cd03268 145 PDLLILDEPTNGLDPDG---IKELRELILSLRDQGITVLISSHL 185 (208)
T ss_pred CCEEEECCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 999988 566643 466777788776667788888773
No 308
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=8.8e-11 Score=113.61 Aligned_cols=157 Identities=21% Similarity=0.280 Sum_probs=93.4
Q ss_pred eeEEeCCcccCcccccccccCc-eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCcc-----cceEEEEeCCCccc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPTT-----DRFVVVMSGVDDRS 247 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~-~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~t-----~r~~i~~~~~~~~~ 247 (545)
.++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+. ...+-+ .+..+.+.+++...
T Consensus 6 ~~~~~~~--~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 83 (211)
T cd03264 6 LTKRYGK--KRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGV 83 (211)
T ss_pred EEEEECC--EEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcc
Confidence 3445654 2488998888765 9999999999999999999998753 1100 000000 01223333333222
Q ss_pred cCCceeEeecCCCCCCccccccc-ch------hhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHH
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTA-FL------SKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~-~~------~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~ 315 (545)
.++.++ ..+. +. ...........+++.+.+. | .|+.+| |++|++. +++
T Consensus 84 ~~~~tv-------------~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~ 143 (211)
T cd03264 84 YPNFTV-------------REFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVG-------IAQ 143 (211)
T ss_pred cccCCH-------------HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHH-------HHH
Confidence 222222 1111 00 0001112233455555543 3 456677 8999988 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+++.+|+++|+ .+|+.. ...+.++++.+.. +..++++.|.
T Consensus 144 al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tii~vsH~ 188 (211)
T cd03264 144 ALVGDPSILIVDEPTAGLDPEE---RIRFRNLLSELGE-DRIVILSTHI 188 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHhC-CCEEEEEcCC
Confidence 99999999998 566653 5667778887765 4677777774
No 309
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=9.1e-11 Score=115.93 Aligned_cols=165 Identities=21% Similarity=0.231 Sum_probs=96.7
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCc------c-cceEEEEeCCCc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPT------T-DRFVVVMSGVDD 245 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~------t-~r~~i~~~~~~~ 245 (545)
++.|+. ..++++++|...+ +++|+|+||||||||++.|+|...| |.+. ...+. . .+..+.+.++..
T Consensus 10 ~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 87 (241)
T PRK10895 10 AKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEA 87 (241)
T ss_pred EEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCC
Confidence 345654 3488999998877 9999999999999999999998753 1110 01000 0 122344445544
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
...++.++..+..... .+. +. ...........++++.+.+-+ .++.+| |++|++. ++++++.+
T Consensus 88 ~~~~~~tv~enl~~~~-~~~--~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~ 155 (241)
T PRK10895 88 SIFRRLSVYDNLMAVL-QIR--DD--LSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVE-------IARALAAN 155 (241)
T ss_pred cccccCcHHHHHhhhh-hcc--cc--cCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHH-------HHHHHhcC
Confidence 3333333211110000 000 00 000011122334445544432 345677 8999988 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
|+++|+ .+|+.. ...+.+++..+...+..++++.|.
T Consensus 156 p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~g~tiii~sH~ 196 (241)
T PRK10895 156 PKFILLDEPFAGVDPIS---VIDIKRIIEHLRDSGLGVLITDHN 196 (241)
T ss_pred CCEEEEcCCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEEcC
Confidence 999998 566543 456667788777667788888884
No 310
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=4.9e-11 Score=115.30 Aligned_cols=164 Identities=26% Similarity=0.299 Sum_probs=94.8
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc--cceEEEEeCCCccccCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT--DRFVVVMSGVDDRSIPG 250 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t--~r~~i~~~~~~~~~~~g 250 (545)
++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ ....+-+ .+..+.+.+++....++
T Consensus 7 ~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~ 84 (210)
T cd03269 7 TKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPK 84 (210)
T ss_pred EEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcC
Confidence 345654 3488899888777 9999999999999999999998743 111 0111100 12233444444333333
Q ss_pred ceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEE
Q 009050 251 NTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (545)
Q Consensus 251 ~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliL 325 (545)
.++..+..... .. .+ ...........++++.+.+. + .++.+| |++|++. ++++++.+|+++|
T Consensus 85 ~tv~e~l~~~~-~~--~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~~ll 151 (210)
T cd03269 85 MKVIDQLVYLA-QL--KG---LKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQ-------FIAAVIHDPELLI 151 (210)
T ss_pred CcHHHHHHHHH-HH--cC---CChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHH-------HHHHHhcCCCEEE
Confidence 33210000000 00 00 00011112233445555442 2 356677 8999988 8999999999998
Q ss_pred E-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 326 L-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 326 l-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+ .+|+.. ...+.++++.+...+..++++.|.
T Consensus 152 lDEP~~~LD~~~---~~~~~~~l~~~~~~~~tii~~sH~ 187 (210)
T cd03269 152 LDEPFSGLDPVN---VELLKDVIRELARAGKTVILSTHQ 187 (210)
T ss_pred EeCCCcCCCHHH---HHHHHHHHHHHHHCCCEEEEECCC
Confidence 8 566543 456677777776666778887774
No 311
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.12 E-value=6.2e-10 Score=106.87 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=76.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|+|||||++++++..+.. ...|+......... ..+......+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~---~~~~Tig~~~~~k~-----------------~~~~~~~~~~~--------- 52 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG---RPSWTVGCSVDVKH-----------------HTYKEGTPEEK--------- 52 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CCCcceeeeEEEEE-----------------EEEcCCCCCCc---------
Confidence 58999999999999999999877521 12222211000000 00000000000
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----------
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---------- 348 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---------- 348 (545)
.-.+.||||+|.-. |..+...+..++|++|+|+|.++....+.+..|+..+..
T Consensus 53 ------~~~l~IwDtaG~e~-----------~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~ 115 (202)
T cd04102 53 ------TFFVELWDVGGSES-----------VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLV 115 (202)
T ss_pred ------EEEEEEEecCCchh-----------HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhcccccccc
Confidence 02678999999832 222445678999999999999885555566677766632
Q ss_pred ------------CCCeEEEEecCCCCCCH
Q 009050 349 ------------HDDKIRVVLNKADQVDT 365 (545)
Q Consensus 349 ------------~~~~iiiVlNK~D~~~~ 365 (545)
.+.|+++|.||+|+.+.
T Consensus 116 ~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 116 TNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred ccccccccccCCCCceEEEEEECccchhh
Confidence 25699999999998753
No 312
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.12 E-value=7.3e-11 Score=120.58 Aligned_cols=163 Identities=20% Similarity=0.238 Sum_probs=96.3
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc-----ccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT-----TDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~-----t~r~~i~~~~~~~~ 246 (545)
.++.|+. ..++++++|...+ +++|+|+||||||||++.|+|...| |.+ +.+.+. ..+..+.+.++...
T Consensus 8 l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~ 85 (301)
T TIGR03522 8 LTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNP 85 (301)
T ss_pred EEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCC
Confidence 3446665 3489999999887 9999999999999999999998753 110 001000 01122344444333
Q ss_pred ccCCceeEeecCCCCCCcccccccc-hhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAF-LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~-~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
..++.++..... + ....+ ............+++.+.+.+ .++.+| |++|++. +|++++.+
T Consensus 86 l~~~~tv~e~l~--~-----~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~-------la~al~~~ 151 (301)
T TIGR03522 86 LYLDMYVREYLQ--F-----IAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVG-------LAQALIHD 151 (301)
T ss_pred CCCCCcHHHHHH--H-----HHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHH-------HHHHHhcC
Confidence 333322210000 0 00000 000011122344555555543 346667 8999988 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
|+++|+ .+|+.. ...+.+++..+++ +..++++.|-
T Consensus 152 p~lliLDEPt~gLD~~~---~~~l~~~l~~~~~-~~tiii~sH~ 191 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQ---LVEIRNVIKNIGK-DKTIILSTHI 191 (301)
T ss_pred CCEEEEcCCcccCCHHH---HHHHHHHHHHhcC-CCEEEEEcCC
Confidence 999998 677653 5677788888865 5677777663
No 313
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.12 E-value=4e-11 Score=107.34 Aligned_cols=164 Identities=23% Similarity=0.283 Sum_probs=115.0
Q ss_pred EeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCC----------CCCCCCc-----ccceEEEEeC
Q 009050 180 RFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGA----------HIGPEPT-----TDRFVVVMSG 242 (545)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~----------~v~~~p~-----t~r~~i~~~~ 242 (545)
.|+. +.++-|++++... .++++||+|+|||||++.|.=.+.|.+ ..+..|+ .-|..+.|.+
T Consensus 11 ~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvf 88 (242)
T COG4161 11 FYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVF 88 (242)
T ss_pred cccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhh
Confidence 4554 3377788877655 999999999999999999876665410 1112222 1245567777
Q ss_pred CCccccCCceeEee---cCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHH
Q 009050 243 VDDRSIPGNTVAVQ---ADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVT 314 (545)
Q Consensus 243 ~~~~~~~g~t~~~~---~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia 314 (545)
+....+|..|+..+ ...-..| +++.+....+.++|+++.+.| -|=.+| |++||++ ++
T Consensus 89 qqy~lwphltv~enlieap~kv~g--------l~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva-------ia 153 (242)
T COG4161 89 QQYNLWPHLTVQENLIEAPCRVLG--------LSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA-------IA 153 (242)
T ss_pred hhhccCchhHHHHHHHhhhHHHhC--------CCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH-------HH
Confidence 77777777766321 1111122 233455566778888888877 455566 6889988 89
Q ss_pred HHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCC
Q 009050 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (545)
Q Consensus 315 ~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~ 363 (545)
|+++-+|++++| .+|+. ++.+...++++|.+.|+.-++|.+-.|..
T Consensus 154 ralmmkpqvllfdeptaaldpe---itaqvv~iikel~~tgitqvivthev~va 204 (242)
T COG4161 154 RALMMEPQVLLFDEPTAALDPE---ITAQIVSIIKELAETGITQVIVTHEVEVA 204 (242)
T ss_pred HHHhcCCcEEeecCcccccCHH---HHHHHHHHHHHHHhcCceEEEEEeehhHH
Confidence 999999999998 56653 57788899999999999999999966643
No 314
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.12 E-value=2.3e-10 Score=115.14 Aligned_cols=173 Identities=21% Similarity=0.233 Sum_probs=94.6
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc--c-ceEEEEeCCCcccc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT--D-RFVVVMSGVDDRSI 248 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t--~-r~~i~~~~~~~~~~ 248 (545)
+++.|... ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+.. . +..+.+.+++....
T Consensus 12 l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~ 90 (272)
T PRK15056 12 VTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVD 90 (272)
T ss_pred EEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccc
Confidence 34456321 3488999988766 9999999999999999999998753 111 0011100 0 11244444432211
Q ss_pred CCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCE
Q 009050 249 PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (545)
Q Consensus 249 ~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDl 323 (545)
......+.....+......+...............+++.+.+- | .++.+| |++|++. ++++++.+|++
T Consensus 91 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~-------laraL~~~p~l 163 (272)
T PRK15056 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVF-------LARAIAQQGQV 163 (272)
T ss_pred cCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH-------HHHHHhcCCCE
Confidence 0000000000000000000000000000111222334444442 3 467778 8999988 89999999999
Q ss_pred EEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 324 ILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 324 iLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
+|+ .+|+.. ...+.+++..++..+..++++.|..
T Consensus 164 lllDEPt~~LD~~~---~~~l~~~L~~~~~~g~tviivsH~~ 202 (272)
T PRK15056 164 ILLDEPFTGVDVKT---EARIISLLRELRDEGKTMLVSTHNL 202 (272)
T ss_pred EEEeCCCccCCHHH---HHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 998 566653 5667788888776677888888844
No 315
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.12 E-value=1.2e-10 Score=115.24 Aligned_cols=169 Identities=22% Similarity=0.307 Sum_probs=96.8
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc-------cceEEEEeCCCc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT-------DRFVVVMSGVDD 245 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t-------~r~~i~~~~~~~ 245 (545)
++.|+. ..++++++|+..+ +++|+|+||+|||||++.|+|...| |.+ +...+.. .+..+.+.++..
T Consensus 9 ~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 86 (242)
T TIGR03411 9 SVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKP 86 (242)
T ss_pred EEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEecccc
Confidence 345654 3489999998877 9999999999999999999998754 111 0111100 012244455544
Q ss_pred cccCCceeEeecCCCCCCccc-ccccc-hhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 246 RSIPGNTVAVQADMPFSGLTT-FGTAF-LSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~-~~~~~-~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
...++.++..+.......... ....+ ...........++++.+.+- + .++.+| |++|++. ++++++
T Consensus 87 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~-------laral~ 159 (242)
T TIGR03411 87 TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLE-------IGMLLM 159 (242)
T ss_pred ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHh
Confidence 444443331111000000000 00000 00001122234455555443 2 456677 8999988 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
.+|+++|+ .+|+.. ...+.+++..+.+ +..++++.|.
T Consensus 160 ~~p~~lllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tii~~sH~ 201 (242)
T TIGR03411 160 QDPKLLLLDEPVAGMTDEE---TEKTAELLKSLAG-KHSVVVVEHD 201 (242)
T ss_pred cCCCEEEecCCccCCCHHH---HHHHHHHHHHHhc-CCEEEEEECC
Confidence 99999988 566543 4667777877765 5778888884
No 316
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.12 E-value=6.5e-11 Score=118.97 Aligned_cols=166 Identities=20% Similarity=0.202 Sum_probs=96.2
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc---------cceEEEEeC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT---------DRFVVVMSG 242 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t---------~r~~i~~~~ 242 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+.+ .+..+.+.+
T Consensus 13 l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~ 90 (269)
T PRK11831 13 VSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLF 90 (269)
T ss_pred eEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEe
Confidence 3445654 3488999998877 9999999999999999999998753 111 0011100 012233444
Q ss_pred CCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 243 VDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 243 ~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
+.....++.|+..+..+.+.. .. .............+++.+.+-+ .|+.+| |++|++. +++++
T Consensus 91 q~~~~~~~~tv~enl~~~~~~---~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~-------laral 158 (269)
T PRK11831 91 QSGALFTDMNVFDNVAYPLRE---HT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAA-------LARAI 158 (269)
T ss_pred cccccCCCCCHHHHHHHHHHH---cc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HHHHH
Confidence 433333332221100000000 00 0000001112233455555533 467778 8999988 89999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNK 359 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK 359 (545)
+.+|+++|+ .+|+.. ...+.+++..+.+. +..++++.|.
T Consensus 159 ~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tiiivsH~ 203 (269)
T PRK11831 159 ALEPDLIMFDEPFVGQDPIT---MGVLVKLISELNSALGVTCVVVSHD 203 (269)
T ss_pred hcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHHHhcCcEEEEEecC
Confidence 999999998 566543 46677788877654 6788888883
No 317
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=5.9e-10 Score=101.80 Aligned_cols=149 Identities=15% Similarity=0.203 Sum_probs=99.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..+.++|..|+|||.|+...+...+ ..+.. . ++.. .-|.+.......+
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF--~~~hd--~----TiGv-------efg~r~~~id~k~----------------- 54 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRF--QPVHD--L----TIGV-------EFGARMVTIDGKQ----------------- 54 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCc--ccccc--c----eeee-------eeceeEEEEcCce-----------------
Confidence 3789999999999999999999887 33322 1 1110 0111110000000
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC---CCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH---DDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~---~~~ii 354 (545)
-.+.+|||+|.-+ |..+++++.+.+.-+|+|+|.+..+....+..||..++++ +..++
T Consensus 55 --------IKlqiwDtaGqe~-----------frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvIm 115 (216)
T KOG0098|consen 55 --------IKLQIWDTAGQES-----------FRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIM 115 (216)
T ss_pred --------EEEEEEecCCcHH-----------HHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEE
Confidence 1688999999832 4568899999999999999998755555566777777654 56899
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++.||+|+....++.+-.+..+... . ..+...+||++++++++
T Consensus 116 LiGNKsDL~~rR~Vs~EEGeaFA~e-h-----gLifmETSakt~~~VEE 158 (216)
T KOG0098|consen 116 LIGNKSDLEARREVSKEEGEAFARE-H-----GLIFMETSAKTAENVEE 158 (216)
T ss_pred EEcchhhhhccccccHHHHHHHHHH-c-----CceeehhhhhhhhhHHH
Confidence 9999999987655544333332111 1 12224689999999886
No 318
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.11 E-value=3.4e-11 Score=111.75 Aligned_cols=163 Identities=20% Similarity=0.261 Sum_probs=99.9
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--------CCCCCCCCcccceEEEEeCCCccc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--------GAHIGPEPTTDRFVVVMSGVDDRS 247 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--------~~~v~~~p~t~r~~i~~~~~~~~~ 247 (545)
+++|+.+ ..++++++|.... +++|+|+|||||||+++.|.+...| |..+...|..-+..+...+.+...
T Consensus 8 ~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~gl 86 (245)
T COG4555 8 TKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGL 86 (245)
T ss_pred hhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcCh
Confidence 3456653 3578899998766 9999999999999999999998865 111222333333332221111111
Q ss_pred cCCceeEeecCCCCCCcccccccc-hhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAF-LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~-~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
+...|.. . .+..|+..+ +++.+......++.+.+.+-| -.|-+| |+||++. +||+++++|
T Consensus 87 Y~RlT~r--E-----nl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~-------iARAlvh~P 152 (245)
T COG4555 87 YARLTAR--E-----NLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVA-------IARALVHDP 152 (245)
T ss_pred hhhhhHH--H-----HHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHH-------HHHHHhcCC
Confidence 1111100 0 001111110 223344445555666666655 245555 8999998 999999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
+++++ ++|... ...+.+++.++++.+..+++..+
T Consensus 153 ~i~vlDEP~sGLDi~~---~r~~~dfi~q~k~egr~viFSSH 191 (245)
T COG4555 153 SILVLDEPTSGLDIRT---RRKFHDFIKQLKNEGRAVIFSSH 191 (245)
T ss_pred CeEEEcCCCCCccHHH---HHHHHHHHHHhhcCCcEEEEecc
Confidence 99998 555543 56788899999988888887666
No 319
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=1.2e-10 Score=116.17 Aligned_cols=165 Identities=18% Similarity=0.286 Sum_probs=95.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCC-cccceEEEEeCCCccccCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEP-TTDRFVVVMSGVDDRSIPG 250 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p-~t~r~~i~~~~~~~~~~~g 250 (545)
.++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+. ...+ ......+.+.++.....+.
T Consensus 7 l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~ 84 (255)
T PRK11248 7 LYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPW 84 (255)
T ss_pred EEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCC
Confidence 3445655 3488999988876 9999999999999999999998753 1110 0000 0011123333333322222
Q ss_pred ceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEE
Q 009050 251 NTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (545)
Q Consensus 251 ~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliL 325 (545)
.++..+..... ...+ ...........++++.+.+- + .|+.+| |++|++. ++++++.+|+++|
T Consensus 85 ~tv~e~l~~~~---~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~-------laral~~~p~lll 151 (255)
T PRK11248 85 RNVQDNVAFGL---QLAG---VEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVG-------IARALAANPQLLL 151 (255)
T ss_pred CcHHHHHHhHH---HHcC---CCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEE
Confidence 22210000000 0000 00011112234455555543 2 466777 8999988 8999999999999
Q ss_pred E-----EeCCCCCCccHHHHHHHHHHh-cCCCeEEEEecC
Q 009050 326 L-----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNK 359 (545)
Q Consensus 326 l-----vlD~~~~~~~~~~~~~l~~L~-~~~~~iiiVlNK 359 (545)
+ .+|+.. ...+.+++..+. ..+..++++.|.
T Consensus 152 LDEPt~~LD~~~---~~~l~~~L~~~~~~~g~tviivsH~ 188 (255)
T PRK11248 152 LDEPFGALDAFT---REQMQTLLLKLWQETGKQVLLITHD 188 (255)
T ss_pred EeCCCccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 8 566543 466677777774 346788888884
No 320
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.11 E-value=5.9e-10 Score=115.61 Aligned_cols=158 Identities=19% Similarity=0.289 Sum_probs=104.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.++|+|-||+|||||+|.++..+ ..|-+.+.||+...+.|.+ +..
T Consensus 169 rTlllcG~PNVGKSSf~~~vtrad---vevqpYaFTTksL~vGH~d-----------------ykY-------------- 214 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRAD---DEVQPYAFTTKLLLVGHLD-----------------YKY-------------- 214 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccc---cccCCcccccchhhhhhhh-----------------hhe--------------
Confidence 489999999999999999999888 6778888888766542211 111
Q ss_pred hcCchhhccCceeecCCCCCCh-hhhhhhhccChHHHHHHHhcCCCEEEEEeCCCC-CCcc-HHHHHHHHHHhc--CCCe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSG-EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK-LDIS-DEFKRVITSLRG--HDDK 352 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sg-ekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~-~~~~-~~~~~~l~~L~~--~~~~ 352 (545)
-.+..+||||++.. ..++-.-. .. ...++++-.-.||+++|.+. .+.+ .+-..+...++. .+++
T Consensus 215 --------lrwQViDTPGILD~plEdrN~IE--mq-sITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~ 283 (620)
T KOG1490|consen 215 --------LRWQVIDTPGILDRPEEDRNIIE--MQ-IITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKV 283 (620)
T ss_pred --------eeeeecCCccccCcchhhhhHHH--HH-HHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCc
Confidence 26788999999982 11111100 11 11234455556788888765 2222 233355555554 3679
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+|+||+|....+++.+-...++..+ .....++.+.+|+.+.+|+.+
T Consensus 284 ~IlvlNK~D~m~~edL~~~~~~ll~~~---~~~~~v~v~~tS~~~eegVm~ 331 (620)
T KOG1490|consen 284 TILVLNKIDAMRPEDLDQKNQELLQTI---IDDGNVKVVQTSCVQEEGVMD 331 (620)
T ss_pred eEEEeecccccCccccCHHHHHHHHHH---HhccCceEEEecccchhceee
Confidence 999999999998877766655554322 233445567899999999886
No 321
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=1.4e-10 Score=113.96 Aligned_cols=154 Identities=21% Similarity=0.302 Sum_probs=91.8
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc---------------ceEEEEeCCCccccC
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD---------------RFVVVMSGVDDRSIP 249 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~---------------r~~i~~~~~~~~~~~ 249 (545)
+++++++|+..+ +++|+|+||||||||++.|+|...| .++...-. +..+.+.+++....+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 588999988877 9999999999999999999998753 11111000 122333333333332
Q ss_pred CceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEE
Q 009050 250 GNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (545)
Q Consensus 250 g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDli 324 (545)
+.|+..+..+.. ...+ ...........++++.+.+.+ .+..+| |++|++. ++++++.+|+++
T Consensus 96 ~~t~~e~l~~~~---~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~ll 162 (233)
T cd03258 96 SRTVFENVALPL---EIAG---VPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVG-------IARALANNPKVL 162 (233)
T ss_pred CCcHHHHHHHHH---HHcC---CCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHH-------HHHHHhcCCCEE
Confidence 222210000000 0000 000011122344555555543 456677 8999988 899999999999
Q ss_pred EE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecC
Q 009050 325 LL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNK 359 (545)
Q Consensus 325 Ll-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK 359 (545)
|+ .+|+.. ...+.+++..+... +..++++.|.
T Consensus 163 lLDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 163 LCDEATSALDPET---TQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred EecCCCCcCCHHH---HHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 98 566543 46677788777654 7788888884
No 322
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=1.5e-10 Score=116.32 Aligned_cols=154 Identities=21% Similarity=0.304 Sum_probs=92.1
Q ss_pred EeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc----------cceEEEEeCCC
Q 009050 180 RFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT----------DRFVVVMSGVD 244 (545)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t----------~r~~i~~~~~~ 244 (545)
.|+.. .++++++|+..+ +++|+|++|||||||+++|+|...| |.+ +.+.+.. .+..+.+.++.
T Consensus 33 ~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~ 110 (269)
T cd03294 33 KTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred hcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecC
Confidence 45553 378888888776 9999999999999999999998753 110 0000000 01123333332
Q ss_pred ccccCCceeEeecCCCCCCcccccccch-------hhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHH
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTG 312 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~-------~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ 312 (545)
....+..|+ ..+..+ ..........++++.+.+- + .|+.+| |++|++.
T Consensus 111 ~~~~~~~tv-------------~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~------- 170 (269)
T cd03294 111 FALLPHRTV-------------LENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVG------- 170 (269)
T ss_pred cccCCCCcH-------------HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHH-------
Confidence 222222221 111100 0001112233455555553 3 467788 8999998
Q ss_pred HHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEec
Q 009050 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLN 358 (545)
Q Consensus 313 ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlN 358 (545)
+|++++.+|+++|+ .+|+.. ...+.+++..+.. .+..++++.|
T Consensus 171 lAral~~~p~illLDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tiii~tH 219 (269)
T cd03294 171 LARALAVDPDILLMDEAFSALDPLI---RREMQDELLRLQAELQKTIVFITH 219 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeC
Confidence 89999999999998 566643 4667777777754 3677888777
No 323
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.10 E-value=2.3e-10 Score=113.06 Aligned_cols=171 Identities=16% Similarity=0.200 Sum_probs=94.8
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHccc--CC--CCC-CCCCCcc-----c--ceEEEEeCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS--YP--GAH-IGPEPTT-----D--RFVVVMSGV 243 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~--~p--~~~-v~~~p~t-----~--r~~i~~~~~ 243 (545)
++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|.. .| |.+ +...+.+ . +..+.+.++
T Consensus 7 ~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 84 (243)
T TIGR01978 7 HVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQ 84 (243)
T ss_pred EEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeec
Confidence 445654 3488999998877 99999999999999999999984 22 111 0111100 0 111333334
Q ss_pred CccccCCceeEeecCCCCCCcccc-cccchhhhhhhcCchhhccCceee----cC-CCC-CC-hhhhhhhhccChHHHHH
Q 009050 244 DDRSIPGNTVAVQADMPFSGLTTF-GTAFLSKFECSQMPHSLLEHITLV----DT-PGV-LS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 244 ~~~~~~g~t~~~~~~~~~~gl~~~-~~~~~~~~~~~~~~~~lL~~v~li----DT-PG~-~s-gekq~v~~~~~~~~ia~ 315 (545)
.....++.++.............. +...............+++.+.+- |. ++. +| |++|++. +++
T Consensus 85 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~-------la~ 157 (243)
T TIGR01978 85 YPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNE-------ILQ 157 (243)
T ss_pred cccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHH-------HHH
Confidence 333333322210000000000000 000000001112233444444442 33 443 77 8999998 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
+++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|..
T Consensus 158 al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tvi~vsH~~ 204 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDA---LKIVAEGINRLREPDRSFLIITHYQ 204 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHH---HHHHHHHHHHHHHCCcEEEEEEecH
Confidence 99999999998 566653 5667788888876677888888844
No 324
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.10 E-value=3.5e-10 Score=123.36 Aligned_cols=133 Identities=21% Similarity=0.252 Sum_probs=83.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc-ccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT-TDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~-t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~~ 275 (545)
..|+|+|+.|+|||||+++|+...-.-...+.... ++.....+.....+...|.++... ..+.+.+
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~------------ 78 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD------------ 78 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC------------
Confidence 37999999999999999999743210012221111 111111122222333445554222 1222222
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..++++||||... |...+...+..+|.+|+|+|+.. ++......+++.....+.|+++
T Consensus 79 ----------~~inliDTPG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~~iPiiv 136 (526)
T PRK00741 79 ----------CLINLLDTPGHED-----------FSEDTYRTLTAVDSALMVIDAAK-GVEPQTRKLMEVCRLRDTPIFT 136 (526)
T ss_pred ----------EEEEEEECCCchh-----------hHHHHHHHHHHCCEEEEEEecCC-CCCHHHHHHHHHHHhcCCCEEE
Confidence 2789999999843 22233445788999999999987 5666777788777778899999
Q ss_pred EecCCCCCC
Q 009050 356 VLNKADQVD 364 (545)
Q Consensus 356 VlNK~D~~~ 364 (545)
++||+|...
T Consensus 137 ~iNK~D~~~ 145 (526)
T PRK00741 137 FINKLDRDG 145 (526)
T ss_pred EEECCcccc
Confidence 999999864
No 325
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.5e-10 Score=116.58 Aligned_cols=158 Identities=22% Similarity=0.292 Sum_probs=95.0
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc-------------ccceEEEEeC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT-------------TDRFVVVMSG 242 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~-------------t~r~~i~~~~ 242 (545)
++.|... ..++++++|+..+ +++|+|+||+|||||++.|+|...| .++... ..+..+.+.+
T Consensus 8 ~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 83 (274)
T PRK13644 8 SYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP---QKGKVLVSGIDTGDFSKLQGIRKLVGIVF 83 (274)
T ss_pred EEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEECCccccHHHHHhheEEEE
Confidence 3455321 3489999998877 9999999999999999999998743 111100 0011122222
Q ss_pred CCccccCCceeEeecCCCCCCccccccc-c------hhhhhhhcCchhhccCcee---ec-CCCCCC-hhhhhhhhccCh
Q 009050 243 VDDRSIPGNTVAVQADMPFSGLTTFGTA-F------LSKFECSQMPHSLLEHITL---VD-TPGVLS-GEKQRTQRAYDF 310 (545)
Q Consensus 243 ~~~~~~~g~t~~~~~~~~~~gl~~~~~~-~------~~~~~~~~~~~~lL~~v~l---iD-TPG~~s-gekq~v~~~~~~ 310 (545)
+.+. ..+.+.....+. + ............+++.+.+ .| .|+.+| |++|++.
T Consensus 84 q~~~------------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~----- 146 (274)
T PRK13644 84 QNPE------------TQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVA----- 146 (274)
T ss_pred EChh------------hhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHH-----
Confidence 2211 011111111111 0 0111112223444555554 23 456677 8999988
Q ss_pred HHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 311 ~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
++++++.+|+++|+ .+|+.. ...+.+++..++..+..++++.|..+
T Consensus 147 --laral~~~p~lllLDEPt~gLD~~~---~~~l~~~l~~l~~~g~til~~tH~~~ 197 (274)
T PRK13644 147 --LAGILTMEPECLIFDEVTSMLDPDS---GIAVLERIKKLHEKGKTIVYITHNLE 197 (274)
T ss_pred --HHHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 89999999999999 566643 46677788887766788888888543
No 326
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.2e-10 Score=105.40 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=98.3
Q ss_pred cccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchh
Q 009050 194 FDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLS 273 (545)
Q Consensus 194 ~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~ 273 (545)
.+....|+++|.+|||||.++-++....+- ....+| +... ..+.|+.. .|..
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~----~~~~sT----iGID------Fk~kti~l------~g~~-------- 60 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFN----TSFIST----IGID------FKIKTIEL------DGKK-------- 60 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCc----CCccce----EEEE------EEEEEEEe------CCeE--------
Confidence 344458999999999999999999876641 111111 1100 01111111 1110
Q ss_pred hhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC---C
Q 009050 274 KFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH---D 350 (545)
Q Consensus 274 ~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~---~ 350 (545)
-.+.+|||+|.- + |..+++++...|+.+++|+|.++....+....|++.+.++ +
T Consensus 61 ------------i~lQiWDtaGQe---r--------f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~ 117 (207)
T KOG0078|consen 61 ------------IKLQIWDTAGQE---R--------FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD 117 (207)
T ss_pred ------------EEEEEEEcccch---h--------HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC
Confidence 267899999982 2 3447889999999999999999854556666787777654 5
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 351 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.++++|.||+|+..+..+..-.+.- ++... .+..+.+||+.|.++++
T Consensus 118 v~~~LvGNK~D~~~~R~V~~e~ge~---lA~e~---G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 118 VVKILVGNKCDLEEKRQVSKERGEA---LAREY---GIKFFETSAKTNFNIEE 164 (207)
T ss_pred CcEEEeeccccccccccccHHHHHH---HHHHh---CCeEEEccccCCCCHHH
Confidence 6899999999998743332211111 11211 23347899999999886
No 327
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=2.4e-10 Score=107.06 Aligned_cols=135 Identities=24% Similarity=0.318 Sum_probs=82.6
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCcc-----ccCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR-----SIPG 250 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~-----~~~g 250 (545)
.+.|+. .+++++++|+..+ +++|+|++|+|||||++.|+|...| .++. +...+.... ...+
T Consensus 7 ~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~-------i~~~g~~~~~~~~~~~~~ 74 (173)
T cd03230 7 SKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP---DSGE-------IKVLGKDIKKEPEEVKRR 74 (173)
T ss_pred EEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeE-------EEECCEEcccchHhhhcc
Confidence 335554 2488999998877 9999999999999999999998742 1111 111111000 0011
Q ss_pred ceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE---
Q 009050 251 NTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL--- 326 (545)
Q Consensus 251 ~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl--- 326 (545)
..+..+....+.+.... +.+. +| |++|++. ++++++.+|+++|+
T Consensus 75 i~~~~q~~~~~~~~tv~------------------~~~~-------LS~G~~qrv~-------laral~~~p~illlDEP 122 (173)
T cd03230 75 IGYLPEEPSLYENLTVR------------------ENLK-------LSGGMKQRLA-------LAQALLHDPELLILDEP 122 (173)
T ss_pred EEEEecCCccccCCcHH------------------HHhh-------cCHHHHHHHH-------HHHHHHcCCCEEEEeCC
Confidence 11111111111111100 0111 66 8999988 89999999999998
Q ss_pred --EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 327 --LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 327 --vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
.+|+.. ...+.+++..+.+.+..++++.|.
T Consensus 123 t~~LD~~~---~~~l~~~l~~~~~~g~tiii~th~ 154 (173)
T cd03230 123 TSGLDPES---RREFWELLRELKKEGKTILLSSHI 154 (173)
T ss_pred ccCCCHHH---HHHHHHHHHHHHHCCCEEEEECCC
Confidence 566643 567778888876666677777773
No 328
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.1e-10 Score=119.44 Aligned_cols=166 Identities=25% Similarity=0.333 Sum_probs=98.7
Q ss_pred eeEEeCCcc---cCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc------------------
Q 009050 177 VTYRFNDFV---SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT------------------ 233 (545)
Q Consensus 177 ~~~~~~~~~---~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t------------------ 233 (545)
+++.|+... ..++++++|+..+ +++|+|+||||||||++.|+|...| .++....
T Consensus 8 l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (305)
T PRK13651 8 IVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP---DTGTIEWIFKDEKNKKKTKEKEKVL 84 (305)
T ss_pred EEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEEeceecccccccccccccc
Confidence 344564321 2489999998876 9999999999999999999998754 1111000
Q ss_pred ------------------cceEEEEeCCCcc-ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee-c-
Q 009050 234 ------------------DRFVVVMSGVDDR-SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV-D- 292 (545)
Q Consensus 234 ------------------~r~~i~~~~~~~~-~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li-D- 292 (545)
.+..+.+.++++. .....++ ...+.+ +....+ ..+.+......++++.+.|- +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv--~e~i~~-~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 85 EKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTI--EKDIIF-GPVSMG---VSKEEAKKRAAKYIELVGLDESY 158 (305)
T ss_pred cccccccccccccchHHHHHhceEEEeeCcccccccccH--HHHHHh-hHHHcC---CCHHHHHHHHHHHHHHcCCChhh
Confidence 0112233333210 0111111 000000 000000 01111223345566666653 2
Q ss_pred ---CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 293 ---TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 293 ---TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
.|..+| |++||+. +|++++.+|+++|+ .+|+.. ...+.+++..+++.+..+++|.+..|
T Consensus 159 ~~~~~~~LSgGqkqrva-------lA~aL~~~P~lLlLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tiiivtHd~~ 226 (305)
T PRK13651 159 LQRSPFELSGGQKRRVA-------LAGILAMEPDFLVFDEPTAGLDPQG---VKEILEIFDNLNKQGKTIILVTHDLD 226 (305)
T ss_pred hhCChhhCCHHHHHHHH-------HHHHHHhCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHHCCCEEEEEeeCHH
Confidence 567777 8999998 89999999999999 666653 56777888888766888899888544
No 329
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=9e-11 Score=118.56 Aligned_cols=168 Identities=24% Similarity=0.360 Sum_probs=97.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc------cceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT------DRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t------~r~~i~~~~~~~ 245 (545)
+++.|+.....++++++|+..+ +++|+|++|+|||||++.|+|...| |.+ +.+...+ .+..+.+.+++.
T Consensus 11 l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 90 (279)
T PRK13635 11 ISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNP 90 (279)
T ss_pred EEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCH
Confidence 3345653223489999988876 9999999999999999999999854 111 0010000 012234444432
Q ss_pred c-ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 246 R-SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 246 ~-~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
. .....++..+..+. ....+ ............++..+.+-+ .|+.+| |++|++. ++++++.
T Consensus 91 ~~~~~~~tv~enl~~~---~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~-------laral~~ 157 (279)
T PRK13635 91 DNQFVGATVQDDVAFG---LENIG---VPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVA-------IAGVLAL 157 (279)
T ss_pred HHhcccccHHHHHhhh---HhhCC---CCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH-------HHHHHHc
Confidence 1 22222221000000 00000 000011122344444444433 677888 8999988 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
+|+++|+ .+|+.. ...+.+++..+.+. +..++++.|..
T Consensus 158 ~p~lllLDEPt~gLD~~~---~~~l~~~l~~l~~~~~~tilivsH~~ 201 (279)
T PRK13635 158 QPDIIILDEATSMLDPRG---RREVLETVRQLKEQKGITVLSITHDL 201 (279)
T ss_pred CCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 9999999 666653 56677888887764 67888888843
No 330
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.10 E-value=1.1e-10 Score=127.79 Aligned_cols=163 Identities=18% Similarity=0.300 Sum_probs=99.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc-------cceEEEEeCCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT-------DRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t-------~r~~i~~~~~~ 244 (545)
+++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +.+.+.. .+..+.+.+++
T Consensus 17 l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 94 (510)
T PRK15439 17 ISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQE 94 (510)
T ss_pred EEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecc
Confidence 4556765 3489999998876 9999999999999999999998754 111 0110000 01123344443
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
....++.++.....+.. . ..........++++.+.+. | .++.+| |++||+. +|++++.
T Consensus 95 ~~~~~~~tv~e~l~~~~---~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~aL~~ 157 (510)
T PRK15439 95 PLLFPNLSVKENILFGL---P-------KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVE-------ILRGLMR 157 (510)
T ss_pred CccCCCCcHHHHhhccc---c-------cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHH-------HHHHHHc
Confidence 33333322211100000 0 0001112233445555543 2 467788 8999998 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|..+
T Consensus 158 ~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~g~tiiivtHd~~ 201 (510)
T PRK15439 158 DSRILILDEPTASLTPAE---TERLFSRIRELLAQGVGIVFISHKLP 201 (510)
T ss_pred CCCEEEEECCCCCCCHHH---HHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 9999998 666653 56777888888766788888888644
No 331
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.10 E-value=3.2e-10 Score=106.29 Aligned_cols=141 Identities=22% Similarity=0.333 Sum_probs=82.3
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEe
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAV 255 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~ 255 (545)
++.|+.....++++++|+..+ +++|+|++|+|||||++.|+|...| .++........+..... ........+..
T Consensus 7 ~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~-~~~~~~i~~~~ 82 (173)
T cd03246 7 SFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP---TSGRVRLDGADISQWDP-NELGDHVGYLP 82 (173)
T ss_pred EEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC---CCCeEEECCEEcccCCH-HHHHhheEEEC
Confidence 345543223478898888776 9999999999999999999998742 11111000000000000 00000011111
Q ss_pred ecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeC
Q 009050 256 QADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFD 329 (545)
Q Consensus 256 ~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD 329 (545)
+....+.+ .+.+.+ +| |++|++. ++++++.+|+++|+ .+|
T Consensus 83 q~~~~~~~-------------------tv~~~l--------LS~G~~qrv~-------la~al~~~p~~lllDEPt~~LD 128 (173)
T cd03246 83 QDDELFSG-------------------SIAENI--------LSGGQRQRLG-------LARALYGNPRILVLDEPNSHLD 128 (173)
T ss_pred CCCccccC-------------------cHHHHC--------cCHHHHHHHH-------HHHHHhcCCCEEEEECCccccC
Confidence 11000000 000111 66 8999988 89999999999998 566
Q ss_pred CCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 330 PHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 330 ~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+.. ...+.+++..+.+.+..++++.|.
T Consensus 129 ~~~---~~~l~~~l~~~~~~~~tii~~sh~ 155 (173)
T cd03246 129 VEG---ERALNQAIAALKAAGATRIVIAHR 155 (173)
T ss_pred HHH---HHHHHHHHHHHHhCCCEEEEEeCC
Confidence 653 466777888877667788888884
No 332
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.10 E-value=3e-10 Score=108.85 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=92.8
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc-----------ceEEEEeCCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-----------RFVVVMSGVD 244 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-----------r~~i~~~~~~ 244 (545)
++.|+. ..++++++|+..+ +++|+|++|||||||++.|+|...| .++..... +..+.+..+.
T Consensus 7 ~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (198)
T TIGR01189 7 ACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRDEPHRNILYLGHL 81 (198)
T ss_pred EEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccchHHhhhheEEeccC
Confidence 345655 3488999988877 9999999999999999999998743 11111000 0112222221
Q ss_pred ccccCCceeEeecCCCCCCccccccc-chhhhh--hhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHH
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTA-FLSKFE--CSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSW 316 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~-~~~~~~--~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~ 316 (545)
....+ ......+. +..... ......++++.+.+- + .++.+| |++|++. ++++
T Consensus 82 ~~~~~-------------~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~a 141 (198)
T TIGR01189 82 PGLKP-------------ELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLA-------LARL 141 (198)
T ss_pred ccccc-------------CCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHH-------HHHH
Confidence 11111 11111111 000000 011123344444442 2 457777 8999988 8999
Q ss_pred HhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 317 ~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|..+
T Consensus 142 l~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 142 WLSRAPLWILDEPTTALDKAG---VALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HhcCCCEEEEeCCCcCCCHHH---HHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 9999999998 556542 45667777777666778888888654
No 333
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.3e-10 Score=116.91 Aligned_cols=169 Identities=18% Similarity=0.304 Sum_probs=94.3
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCc------ccceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPT------TDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~------t~r~~i~~~~~~~ 245 (545)
.++.|+.....++++++|+..+ +++|+|++|||||||++.|+|...| |.+. .+.+. ..+..+.+.+++.
T Consensus 13 l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 92 (269)
T PRK13648 13 VSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNP 92 (269)
T ss_pred EEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeCh
Confidence 3445653222478999988876 9999999999999999999998743 1100 00000 0011223333322
Q ss_pred c-ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 246 R-SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 246 ~-~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
. ..++.++..+..+. ....+ ............+++.+.+- | .++.+| |++|++. ++++++.
T Consensus 93 ~~~~~~~~v~~~~~~~---~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral~~ 159 (269)
T PRK13648 93 DNQFVGSIVKYDVAFG---LENHA---VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVA-------IAGVLAL 159 (269)
T ss_pred HHhcccccHHHHHHhh---HHhcC---CCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHH-------HHHHHHc
Confidence 1 12221110000000 00000 00001112233444555442 3 456677 8999988 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCCC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKAD 361 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~D 361 (545)
+|+++|+ .+|+.. ...+.+++..+.+. +..++++.|..+
T Consensus 160 ~p~lllLDEPt~~LD~~~---~~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 160 NPSVIILDEATSMLDPDA---RQNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred CCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEecCch
Confidence 9999999 566653 45666777777653 678888888544
No 334
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=2.4e-10 Score=114.61 Aligned_cols=171 Identities=19% Similarity=0.195 Sum_probs=98.3
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCC-----c-ccceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEP-----T-TDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p-----~-t~r~~i~~~~~~~ 245 (545)
+++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+. ...+ . ..+..+.+.++..
T Consensus 17 l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 94 (265)
T PRK10575 17 VSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQL 94 (265)
T ss_pred EEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCC
Confidence 3445654 3489999999877 9999999999999999999998743 1110 0000 0 0012344444443
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
...++.++..+..+.......... .. ..........+++.+.+- + .|+.+| |++|++. ++++++.+
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------laral~~~ 165 (265)
T PRK10575 95 PAAEGMTVRELVAIGRYPWHGALG-RF-GAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAW-------IAMLVAQD 165 (265)
T ss_pred CCCCCccHHHHHHhCccccccccc-CC-CHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHH-------HHHHHhcC
Confidence 333433331111000000000000 00 000111223444444442 3 567788 8999988 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCCC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKAD 361 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~D 361 (545)
|+++|+ .+|+.. ...+.+++..+... +..++++.|..+
T Consensus 166 p~lllLDEPt~~LD~~~---~~~~~~~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 166 SRCLLLDEPTSALDIAH---QVDVLALVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred CCEEEEcCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999998 566643 45677788877654 678888888543
No 335
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=1.9e-10 Score=113.64 Aligned_cols=160 Identities=23% Similarity=0.247 Sum_probs=94.4
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc------------------cce
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT------------------DRF 236 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t------------------~r~ 236 (545)
+++.|+. ..++++++|+..+ +++|+|++|||||||++.|+|...| .++...- .+.
T Consensus 8 l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (242)
T PRK11124 8 INCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKTPSDKAIRELRR 82 (242)
T ss_pred eEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecccccccchhhHHHHHh
Confidence 3445654 3589999988776 9999999999999999999998743 1111100 011
Q ss_pred EEEEeCCCccccCCceeEeecCC---CCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhcc
Q 009050 237 VVVMSGVDDRSIPGNTVAVQADM---PFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAY 308 (545)
Q Consensus 237 ~i~~~~~~~~~~~g~t~~~~~~~---~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~ 308 (545)
.+.+.++.....++.++..+... .+.+. ..........++++.+.+- | .|+.+| |++|++.
T Consensus 83 ~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~--------~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~--- 151 (242)
T PRK11124 83 NVGMVFQQYNLWPHLTVQQNLIEAPCRVLGL--------SKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA--- 151 (242)
T ss_pred heEEEecCccccCCCcHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH---
Confidence 23333333333333222100000 00000 0001111223344444442 3 356677 8999988
Q ss_pred ChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 309 ~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+++.+..++++.+.
T Consensus 152 ----laral~~~p~llilDEPt~~LD~~~---~~~l~~~l~~~~~~~~tii~~sh~ 200 (242)
T PRK11124 152 ----IARALMMEPQVLLFDEPTAALDPEI---TAQIVSIIRELAETGITQVIVTHE 200 (242)
T ss_pred ----HHHHHhcCCCEEEEcCCCCcCCHHH---HHHHHHHHHHHHHcCCEEEEEeCC
Confidence 89999999999988 556542 456677788777667788888774
No 336
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=3.7e-10 Score=116.51 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=98.9
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccc--------cC--CceeE
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--------IP--GNTVA 254 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~--------~~--g~t~~ 254 (545)
.++++++|+..+ +++|+|++|||||||+++|+|...+.. .+ +...+.+.+.+... .. ...+.
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~----~~--~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v 94 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPG----RV--MAEKLEFNGQDLQRISEKERRNLVGAEVAMI 94 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC----CC--cceEEEECCEECCcCCHHHHHHHhCCCEEEE
Confidence 489999999887 999999999999999999999763110 01 11222222221110 01 12223
Q ss_pred eecCC-CCCCcccccccc---h------hhhhhhcCchhhccCceeec-------CCCCCC-hhhhhhhhccChHHHHHH
Q 009050 255 VQADM-PFSGLTTFGTAF---L------SKFECSQMPHSLLEHITLVD-------TPGVLS-GEKQRTQRAYDFTGVTSW 316 (545)
Q Consensus 255 ~~~~~-~~~gl~~~~~~~---~------~~~~~~~~~~~lL~~v~liD-------TPG~~s-gekq~v~~~~~~~~ia~~ 316 (545)
.+... .+....+.+..+ + .+.+......++|+.+.+-| .|+.+| |++||+. +|++
T Consensus 95 ~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~-------iArA 167 (326)
T PRK11022 95 FQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM-------IAMA 167 (326)
T ss_pred ecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH-------HHHH
Confidence 33211 122222222111 0 11122334556777777743 678888 8999998 8999
Q ss_pred HhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 317 ~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
++.+|+++|+ .+|+.. ..++.+++..+++ .+..+++|.|..+
T Consensus 168 L~~~P~llilDEPts~LD~~~---~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 168 IACRPKLLIADEPTTALDVTI---QAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred HHhCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999999998 666653 5677788888865 5778888888543
No 337
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=1.6e-10 Score=117.38 Aligned_cols=158 Identities=25% Similarity=0.363 Sum_probs=94.4
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc----------ccceEEEEeCCCc--cccC
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT----------TDRFVVVMSGVDD--RSIP 249 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~----------t~r~~i~~~~~~~--~~~~ 249 (545)
.++++++|+..+ +|+|+|++|||||||++.|+|...| |.+ +...+. ..+..+.+.++++ ...+
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 489999999877 9999999999999999999998754 111 111110 0122334444432 1111
Q ss_pred CceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCE
Q 009050 250 GNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (545)
Q Consensus 250 g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDl 323 (545)
+ ++. ..+.+ +....+ ..+.+......++++.+.+. + .|..+| |++|++. +|++++.+|++
T Consensus 100 ~-tv~--~~l~~-~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrva-------iA~aL~~~p~i 165 (288)
T PRK13643 100 E-TVL--KDVAF-GPQNFG---IPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVA-------IAGILAMEPEV 165 (288)
T ss_pred c-hHH--HHHHh-HHHHcC---CCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHH-------HHHHHHhCCCE
Confidence 1 110 00000 000000 01111122334445444442 3 456777 8999988 89999999999
Q ss_pred EEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 324 ILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 324 iLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+|+ .+|+.. ...+.+++..+++.+..++++.|..+
T Consensus 166 llLDEPt~gLD~~~---~~~l~~~l~~l~~~g~til~vtHd~~ 205 (288)
T PRK13643 166 LVLDEPTAGLDPKA---RIEMMQLFESIHQSGQTVVLVTHLMD 205 (288)
T ss_pred EEEECCccCCCHHH---HHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 998 666653 56677888888766788888888543
No 338
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.09 E-value=2.7e-10 Score=113.16 Aligned_cols=165 Identities=24% Similarity=0.332 Sum_probs=95.1
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc--------------ccceEE
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT--------------TDRFVV 238 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~--------------t~r~~i 238 (545)
++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ ....+. ..+..+
T Consensus 10 ~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i 87 (250)
T PRK11264 10 VKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHV 87 (250)
T ss_pred EEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhE
Confidence 446654 3489999998876 9999999999999999999998743 111 000000 001223
Q ss_pred EEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHH
Q 009050 239 VMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGV 313 (545)
Q Consensus 239 ~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~i 313 (545)
.+.++.....++.++..+... +...... ...........++++.+.+- | .++.+| |++|++. +
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~---~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~-------l 155 (250)
T PRK11264 88 GFVFQNFNLFPHRTVLENIIE---GPVIVKG--EPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVA-------I 155 (250)
T ss_pred EEEecCcccCCCCCHHHHHHH---HHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHH-------H
Confidence 333333333332222100000 0000000 00001112233445555443 3 356677 8999988 8
Q ss_pred HHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 314 a~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+++++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|.
T Consensus 156 a~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 156 ARALAMRPEVILFDEPTSALDPEL---VGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9999999999998 566643 466777788777667788888773
No 339
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.08 E-value=3.1e-10 Score=110.15 Aligned_cols=156 Identities=22% Similarity=0.243 Sum_probs=92.2
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc---------ceEEEEeCCCcc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD---------RFVVVMSGVDDR 246 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~---------r~~i~~~~~~~~ 246 (545)
++.|++ ..++++++|...+ +++|+|+||+|||||++.|+|...| .++..... +..+.+.++.+.
T Consensus 18 ~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~i~~~~~~~~i~~~~q~~~ 92 (214)
T PRK13543 18 AFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV---ESGQIQIDGKTATRGDRSRFMAYLGHLPG 92 (214)
T ss_pred EEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCeeEEECCEEccchhhhhceEEeecCcc
Confidence 345554 3488999988877 9999999999999999999998743 11111100 111222222222
Q ss_pred ccCCceeEeecCCCCCCcccccccch-hh---hhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFL-SK---FECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~-~~---~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
..++ +....+... .. .........++..+.+- | .++.+| |++|++. +++++
T Consensus 93 ~~~~-------------~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral 152 (214)
T PRK13543 93 LKAD-------------LSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLA-------LARLW 152 (214)
T ss_pred cccC-------------CcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHH-------HHHHH
Confidence 1111 111111100 00 00111223344444442 3 456677 7999988 89999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+.+++++|+ .+|+.. ...+.+++..+.+.+..++++.|..+
T Consensus 153 ~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 153 LSPAPLWLLDEPYANLDLEG---ITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred hcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEecChh
Confidence 999999988 455542 45666777777666778888888554
No 340
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.08 E-value=2.6e-10 Score=112.61 Aligned_cols=165 Identities=22% Similarity=0.286 Sum_probs=95.7
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc--------cceEEEEeCCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT--------DRFVVVMSGVD 244 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t--------~r~~i~~~~~~ 244 (545)
++.|++ ..++++++|+..+ +++|+|+||+|||||++.|+|...| |.+ +...+.. .+..+.+.++.
T Consensus 8 ~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 85 (240)
T PRK09493 8 SKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQ 85 (240)
T ss_pred EEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecc
Confidence 345654 3488999998776 9999999999999999999998743 111 0000000 01123334443
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
....++.++..+..+..... .+ ...........++++.+.+- | .|+.+| |++|++. ++++++.
T Consensus 86 ~~~~~~~tv~~~l~~~~~~~--~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~-------la~al~~ 153 (240)
T PRK09493 86 FYLFPHLTALENVMFGPLRV--RG---ASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVA-------IARALAV 153 (240)
T ss_pred cccCCCCcHHHHHHhHHHHh--cC---CCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHH-------HHHHHhc
Confidence 33333222210000000000 00 00011112234455555543 2 456677 8999988 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|.
T Consensus 154 ~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~~~~tiii~sH~ 195 (240)
T PRK09493 154 KPKLMLFDEPTSALDPEL---RHEVLKVMQDLAEEGMTMVIVTHE 195 (240)
T ss_pred CCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHcCCEEEEEeCC
Confidence 9999988 566643 466777888777667788888884
No 341
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=1.7e-10 Score=116.62 Aligned_cols=169 Identities=23% Similarity=0.357 Sum_probs=99.1
Q ss_pred eeEEeCCc-ccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc------ccceEEEEeCCC
Q 009050 177 VTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT------TDRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~-~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~------t~r~~i~~~~~~ 244 (545)
+++.|+.. ...++++++|...+ +++|+|+||||||||++.|+|...| |.+ +.+.+- .-+..+.+.+++
T Consensus 10 l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 89 (279)
T PRK13650 10 LTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQN 89 (279)
T ss_pred EEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcC
Confidence 34456431 12489999998877 9999999999999999999998754 111 000000 011223344443
Q ss_pred cc-ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 245 DR-SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 245 ~~-~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
+. ...+.|+..+ +.+ +....+ ....+.......+++.+.+-+ .|+.+| |++|++. +|++++
T Consensus 90 ~~~~~~~~tv~en--i~~-~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~-------lAral~ 156 (279)
T PRK13650 90 PDNQFVGATVEDD--VAF-GLENKG---IPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVA-------IAGAVA 156 (279)
T ss_pred hHHhcccccHHHH--HHh-hHHhCC---CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH-------HHHHHH
Confidence 21 2222222100 000 000000 011111223344555555543 567788 8999998 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCCC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKAD 361 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~D 361 (545)
.+|+++|+ .+|+.. ...+.+++..+.+. +..++++.|..+
T Consensus 157 ~~p~lLlLDEPt~~LD~~~---~~~l~~~l~~l~~~~g~tilivtH~~~ 202 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEG---RLELIKTIKGIRDDYQMTVISITHDLD 202 (279)
T ss_pred cCCCEEEEECCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 99999999 666653 56677888888654 788999888543
No 342
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.08 E-value=7e-10 Score=102.01 Aligned_cols=147 Identities=23% Similarity=0.330 Sum_probs=88.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|+|||||++.+.+..++. ...|+........ . ..+.+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~---~~~~t~~~~~~~~-----------~------~~~~~~-------------- 46 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE---NYIPTIGIDSYSK-----------E------VSIDGK-------------- 46 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS---SSETTSSEEEEEE-----------E------EEETTE--------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc---ccccccccccccc-----------c------cccccc--------------
Confidence 48999999999999999999877531 1222211111000 0 000000
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~iii 355 (545)
-..+.++|++|... |..+...+..++|.+++++|.++....+....|+..+. ..+.|+++
T Consensus 47 ------~~~l~i~D~~g~~~-----------~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iiv 109 (162)
T PF00071_consen 47 ------PVNLEIWDTSGQER-----------FDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIV 109 (162)
T ss_dssp ------EEEEEEEEETTSGG-----------GHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEE
T ss_pred ------cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 02688999999632 11234566899999999999987433344455555543 23579999
Q ss_pred EecCCCCCCHHHHHHH-HHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v-~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||.|+.+...+... ...+ .+..+ ...+.+||+++.++.+
T Consensus 110 vg~K~D~~~~~~v~~~~~~~~----~~~~~---~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 110 VGNKSDLSDEREVSVEEAQEF----AKELG---VPYFEVSAKNGENVKE 151 (162)
T ss_dssp EEETTTGGGGSSSCHHHHHHH----HHHTT---SEEEEEBTTTTTTHHH
T ss_pred eeccccccccccchhhHHHHH----HHHhC---CEEEEEECCCCCCHHH
Confidence 9999998752221110 1111 12222 3447899999988775
No 343
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.08 E-value=2e-10 Score=119.90 Aligned_cols=163 Identities=21% Similarity=0.283 Sum_probs=96.4
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC----------cccceEEEE
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP----------TTDRFVVVM 240 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p----------~t~r~~i~~ 240 (545)
.+++.|+++. + +++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+ ...+..+.+
T Consensus 4 ~l~~~~~~~~---~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDFS---L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCEE---E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 4566776532 3 77777765 9999999999999999999998754 111 00000 001122334
Q ss_pred eCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHH
Q 009050 241 SGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 241 ~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~ 315 (545)
.+++....++.|+..+..+.+.. ...........++++.+.+- | .|+.+| |++||+. +++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~--------~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRva-------lAr 144 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKR--------ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVA-------IGR 144 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhc--------cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHH
Confidence 44443333333321110000000 00001112234555555553 3 466777 8999998 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
+++.+|+++|+ .+|+.. ...+.+++..+... +.+++++.|..
T Consensus 145 aL~~~p~lllLDEPts~LD~~~---~~~l~~~L~~l~~~~g~tiiivtH~~ 192 (354)
T TIGR02142 145 ALLSSPRLLLMDEPLAALDDPR---KYEILPYLERLHAEFGIPILYVSHSL 192 (354)
T ss_pred HHHcCCCEEEEcCCCcCCCHHH---HHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 99999999998 566643 56677788877654 67888888844
No 344
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.07 E-value=5.8e-11 Score=124.29 Aligned_cols=166 Identities=22% Similarity=0.283 Sum_probs=101.7
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCC-----Ccc---------cceEE
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPE-----PTT---------DRFVV 238 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~-----p~t---------~r~~i 238 (545)
..+|+... .+++++|+..+ +++|+|++|||||||+++|+|...| |.+ +..+ ... .+..+
T Consensus 31 ~~~~g~~~--~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 31 LDETGLVV--GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HHhhCCEE--EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 33566543 78888888877 9999999999999999999998854 111 0110 000 01234
Q ss_pred EEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHH
Q 009050 239 VMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (545)
Q Consensus 239 ~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~i 313 (545)
.|.++.....+..|+..+..+. ....+ ..+........++++.+.+-+ .|+.+| |++||+. +
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~---~~~~g---~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~-------L 175 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFG---LEMQG---MPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVG-------L 175 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHH---HHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------H
Confidence 4555544444433331111000 00000 011112233455666666643 677788 7999998 8
Q ss_pred HHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 314 a~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
+++++.+|+++|+ .+|+.. ..++.+.+..+.. .+..++++.|..|
T Consensus 176 ARALa~~P~ILLlDEPts~LD~~~---r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 176 ARAFAMDADILLMDEPFSALDPLI---RTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred HHHHhcCCCEEEEECCCccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999999999999 566643 5667777777765 4788888888443
No 345
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.07 E-value=2.3e-10 Score=112.01 Aligned_cols=158 Identities=23% Similarity=0.287 Sum_probs=91.6
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCccc----------ceEEEEeCCCccccCCc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPTTD----------RFVVVMSGVDDRSIPGN 251 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~t~----------r~~i~~~~~~~~~~~g~ 251 (545)
.++++++|+..+ +++|+|+||+|||||++.|+|...| |.+. ...+.+. +..+.+.++.....++.
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 478998888776 9999999999999999999998753 1110 0101000 11233334433322322
Q ss_pred eeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE
Q 009050 252 TVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (545)
Q Consensus 252 t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl 326 (545)
++..+..+.. ...+ ...........++++.+.+.+ .|+.+| |++|++. ++++++.+|+++|+
T Consensus 104 tv~~~l~~~~---~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~-------la~al~~~p~llll 170 (228)
T PRK10584 104 NALENVELPA---LLRG---ESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVA-------LARAFNGRPDVLFA 170 (228)
T ss_pred CHHHHHHHHH---HhcC---CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEE
Confidence 2110000000 0000 000011122344555555432 467777 8999988 89999999999988
Q ss_pred -----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 327 -----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 327 -----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
.+|+.. ...+.+++..+.. .+..++++.|..
T Consensus 171 DEPt~~LD~~~---~~~l~~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 171 DEPTGNLDRQT---GDKIADLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred eCCCCCCCHHH---HHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 556543 4666777777754 467888888853
No 346
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.07 E-value=9.1e-10 Score=118.07 Aligned_cols=168 Identities=17% Similarity=0.179 Sum_probs=103.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCC-----------C--cccceEEEEeCCCccccCCceeEeec-CCCCCCc
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPE-----------P--TTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGL 264 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~-----------p--~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl 264 (545)
.|+++|..++|||||+-+|+-..- .+... - .......++....++...|.|+.... .+.+.+
T Consensus 9 ni~i~Ghvd~GKSTL~g~Ll~~~g---~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~- 84 (447)
T PLN00043 9 NIVVIGHVDSGKSTTTGHLIYKLG---GIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK- 84 (447)
T ss_pred EEEEEecCCCCHHHHHHHHHHHhC---CCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC-
Confidence 699999999999999998884331 11110 0 01111234455555667788875421 111111
Q ss_pred ccccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCcc-------H
Q 009050 265 TTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDIS-------D 337 (545)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~-------~ 337 (545)
..++|+||||... |...+...+..+|.+|+|+|+.. +.. .
T Consensus 85 ---------------------~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~ 131 (447)
T PLN00043 85 ---------------------YYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDG 131 (447)
T ss_pred ---------------------EEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEccc-CceecccCCCc
Confidence 3789999999732 33344556789999999999986 311 3
Q ss_pred HHHHHHHHHhcCCC-eEEEEecCCCCCC----HHHHHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 338 EFKRVITSLRGHDD-KIRVVLNKADQVD----TQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 338 ~~~~~l~~L~~~~~-~iiiVlNK~D~~~----~~~l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+..+.+..+...+. ++++++||+|+.+ .+.+.++...+...+.+. +....++.+++||+.|.++.+
T Consensus 132 qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 132 QTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 55566665666677 4788999999863 233444444443223322 111235568999999999875
No 347
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.07 E-value=2.1e-10 Score=112.15 Aligned_cols=158 Identities=22% Similarity=0.267 Sum_probs=93.5
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCcc------cceEEEEeCCCcc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPTT------DRFVVVMSGVDDR 246 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~t------~r~~i~~~~~~~~ 246 (545)
++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+. ...+.+ .+..+.+.++...
T Consensus 14 ~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 91 (225)
T PRK10247 14 GYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPT 91 (225)
T ss_pred EEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccc
Confidence 345654 3489999999887 9999999999999999999998643 1110 000000 0112233333222
Q ss_pred ccCCceeEeecCCCCCCccccccc-ch----hhhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhccChHHHHH
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTA-FL----SKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~-~~----~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia~ 315 (545)
..+. ++ ..+. +. ..........++++.+.+. | .++.+| |++|++. +++
T Consensus 92 l~~~-tv-------------~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~-------lar 150 (225)
T PRK10247 92 LFGD-TV-------------YDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRIS-------LIR 150 (225)
T ss_pred cccc-cH-------------HHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHH-------HHH
Confidence 2211 11 1110 00 0000111223455555553 3 346667 8999988 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
+++.+|+++|+ .+|+.. ...+.+++..+.+ .+..++++.+..+
T Consensus 151 al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 151 NLQFMPKVLLLDEITSALDESN---KHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred HHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 99999999998 566543 4566677777754 4678888888544
No 348
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=1.6e-10 Score=113.93 Aligned_cols=163 Identities=21% Similarity=0.226 Sum_probs=93.6
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc-----c--cceEEEEeCCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT-----T--DRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~-----t--~r~~i~~~~~~ 244 (545)
+++.|+. ..++++++|...+ +++|+|+||+|||||++.|+|...| |.+ +.+.+. . .+..+.+.++.
T Consensus 11 l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 88 (237)
T PRK11614 11 VSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEG 88 (237)
T ss_pred EEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccC
Confidence 3445654 3488999988877 9999999999999999999998753 110 000110 0 11224444444
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCc-eee---c-CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI-TLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v-~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
....++.++..+..... . +...........++++.+ .+- + .++.+| |++|++. ++++++
T Consensus 89 ~~~~~~~tv~~~l~~~~--~------~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~ 153 (237)
T PRK11614 89 RRVFSRMTVEENLAMGG--F------FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLA-------IGRALM 153 (237)
T ss_pred cccCCCCcHHHHHHHhh--h------ccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHH-------HHHHHH
Confidence 33333322210000000 0 000000011112222233 121 2 456677 8999988 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.+.
T Consensus 154 ~~p~illlDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~sH~ 196 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPII---IQQIFDTIEQLREQGMTIFLVEQN 196 (237)
T ss_pred hCCCEEEEcCccccCCHHH---HHHHHHHHHHHHHCCCEEEEEeCc
Confidence 99999998 566643 566777888877667788887773
No 349
>PTZ00416 elongation factor 2; Provisional
Probab=99.07 E-value=7.7e-10 Score=127.21 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=89.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+|+|+.++|||||+++|++..- .+...... .+..+.....+...|.|+.... .+.|......+
T Consensus 21 ni~iiGh~d~GKTTL~~~Ll~~~g--~i~~~~~g---~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~--------- 86 (836)
T PTZ00416 21 NMSVIAHVDHGKSTLTDSLVCKAG--IISSKNAG---DARFTDTRADEQERGITIKSTGISLYYEHDLEDG--------- 86 (836)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--CcccccCC---ceeecccchhhHhhcceeeccceEEEeecccccc---------
Confidence 799999999999999999998652 22222111 2223444445556676663211 11121000000
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
...--..++|+||||... |...+...+..+|.+|+|+|+.. ++......+++.+...+.|+++++
T Consensus 87 ---~~~~~~~i~liDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~-g~~~~t~~~~~~~~~~~~p~iv~i 151 (836)
T PTZ00416 87 ---DDKQPFLINLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVE-GVCVQTETVLRQALQERIRPVLFI 151 (836)
T ss_pred ---cCCCceEEEEEcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCC-CcCccHHHHHHHHHHcCCCEEEEE
Confidence 000002689999999854 22234556799999999999987 677778889998888889999999
Q ss_pred cCCCCC
Q 009050 358 NKADQV 363 (545)
Q Consensus 358 NK~D~~ 363 (545)
||+|..
T Consensus 152 NK~D~~ 157 (836)
T PTZ00416 152 NKVDRA 157 (836)
T ss_pred EChhhh
Confidence 999987
No 350
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.07 E-value=1.5e-10 Score=126.84 Aligned_cols=173 Identities=18% Similarity=0.190 Sum_probs=102.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC-----cc--cceEEEEeCCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP-----TT--DRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p-----~t--~r~~i~~~~~~ 244 (545)
.++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +.+.+ .. .+..+.+.+++
T Consensus 11 l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~ 88 (510)
T PRK09700 11 IGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQE 88 (510)
T ss_pred eEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeec
Confidence 4446655 3488999998876 9999999999999999999998754 111 11100 00 01234455554
Q ss_pred ccccCCceeEeecCCCCCCcc-cccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 245 DRSIPGNTVAVQADMPFSGLT-TFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~-~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
....++.++..+..+...... ..+..............++++.+.+- | .++.+| |++||+. +|++++
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~-------ia~al~ 161 (510)
T PRK09700 89 LSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLE-------IAKTLM 161 (510)
T ss_pred ccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH-------HHHHHh
Confidence 444444333111111000000 00000000111122334455555553 3 467788 8999998 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
.+|+++|+ .+|+.. ...+.+++..++..+..++++.|..+
T Consensus 162 ~~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tiiivsHd~~ 206 (510)
T PRK09700 162 LDAKVIIMDEPTSSLTNKE---VDYLFLIMNQLRKEGTAIVYISHKLA 206 (510)
T ss_pred cCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 99999998 566643 56677888888766778888888543
No 351
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.06 E-value=2e-10 Score=125.62 Aligned_cols=171 Identities=19% Similarity=0.250 Sum_probs=102.0
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc-------cceEEEEeCCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT-------DRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t-------~r~~i~~~~~~ 244 (545)
+++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +.+.+.+ .+..+.+.+++
T Consensus 10 l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 87 (501)
T PRK10762 10 IDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQE 87 (501)
T ss_pred eEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcc
Confidence 4446665 3489999998876 9999999999999999999998754 211 1111100 01234444444
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
....+..|+.....+.......++ ............++++.+.+-+ .++.+| |++|++. +|++++.
T Consensus 88 ~~~~~~~tv~e~l~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~al~~ 158 (501)
T PRK10762 88 LNLIPQLTIAENIFLGREFVNRFG--RIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVE-------IAKVLSF 158 (501)
T ss_pred hhccCCCcHHHHhhhccccccccC--ccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHH-------HHHHHhc
Confidence 433343333111111000000000 0000111122345566665533 467788 8999998 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+|+++|+ .+|+.. ...+.+++..++..+..++++.|..+
T Consensus 159 ~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~~~tvii~sHd~~ 202 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTE---TESLFRVIRELKSQGRGIVYISHRLK 202 (501)
T ss_pred CCCEEEEeCCcCCCCHHH---HHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 9999998 566653 56677788888766778888888543
No 352
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.06 E-value=2.9e-10 Score=99.16 Aligned_cols=114 Identities=20% Similarity=0.321 Sum_probs=64.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
+|+|+|++|||||||+++|++... ........ ..+.+..... ....+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~--~~~~~~~~---------------~~~~~~~~~~------~~~~~~~-------- 49 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF--PDNSVPEE---------------TSEITIGVDV------IVVDGDR-------- 49 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----------S---------------STTSCEEEEE------EEETTEE--------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC--cccccccc---------------cCCCcEEEEE------EEecCCc--------
Confidence 589999999999999999999885 20000000 1111110000 0000000
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHH---HHHHhc--CCCeE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRV---ITSLRG--HDDKI 353 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~---l~~L~~--~~~~i 353 (545)
..+.++|++|...... ....++..+|++++++|.++........++ +..++. .+.|+
T Consensus 50 -------~~~~~~d~~g~~~~~~-----------~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~pi 111 (119)
T PF08477_consen 50 -------QSLQFWDFGGQEEFYS-----------QHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPI 111 (119)
T ss_dssp -------EEEEEEEESSSHCHHC-----------TSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEE
T ss_pred -------eEEEEEecCccceecc-----------cccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCE
Confidence 1478999999832111 112337899999999999873322333333 444432 45899
Q ss_pred EEEecCCC
Q 009050 354 RVVLNKAD 361 (545)
Q Consensus 354 iiVlNK~D 361 (545)
++|.||.|
T Consensus 112 ilv~nK~D 119 (119)
T PF08477_consen 112 ILVGNKSD 119 (119)
T ss_dssp EEEEE-TC
T ss_pred EEEEeccC
Confidence 99999998
No 353
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=1.5e-10 Score=116.67 Aligned_cols=168 Identities=24% Similarity=0.361 Sum_probs=97.9
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc------cceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT------DRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t------~r~~i~~~~~~~ 245 (545)
+++.|... ..++++++|...+ +++|+|+||||||||++.|+|...| |.+ +.+.+.. .+..+.+.++++
T Consensus 10 l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 88 (274)
T PRK13647 10 LHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDP 88 (274)
T ss_pred EEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecCh
Confidence 33455321 3489999998877 9999999999999999999998753 111 0011000 012233444432
Q ss_pred c-ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 246 R-SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 246 ~-~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
. .....++..+ +.+ +....+ ..+.........+++.+.+- | .|+.+| |++||+. ++++++.
T Consensus 89 ~~~~~~~tv~e~--l~~-~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~-------laraL~~ 155 (274)
T PRK13647 89 DDQVFSSTVWDD--VAF-GPVNMG---LDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVA-------IAGVLAM 155 (274)
T ss_pred hhhhccCcHHHH--HHh-hHHHcC---CCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHH-------HHHHHHc
Confidence 1 1111111000 000 000000 00011112234445555543 2 567788 7999988 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+|+++|+ .+|+.. ..++.+++..+.+.+..++++.|..+
T Consensus 156 ~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~g~tili~tH~~~ 199 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRG---QETLMEILDRLHNQGKTVIVATHDVD 199 (274)
T ss_pred CCCEEEEECCCcCCCHHH---HHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 9999999 666653 56777888888766788888888543
No 354
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.4e-10 Score=132.01 Aligned_cols=88 Identities=24% Similarity=0.392 Sum_probs=82.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhC-
Q 009050 7 PIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQD- 85 (545)
Q Consensus 7 ~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~- 85 (545)
..|.++++|+++|+++|..+.+. .|.++|+.|+.+|++|+||...|++||+|||.+.+|.|++.||.+|||||..+.+
T Consensus 119 ~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~ 197 (847)
T KOG0998|consen 119 FVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNG 197 (847)
T ss_pred cCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhc
Confidence 45999999999999999999996 7999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCccccc
Q 009050 86 -GHQVTHDLWN 95 (545)
Q Consensus 86 -g~~~~~~l~~ 95 (545)
-.++|..+++
T Consensus 198 ~~~p~P~~~p~ 208 (847)
T KOG0998|consen 198 NSEPVPSRLPP 208 (847)
T ss_pred ccCCCCccCCc
Confidence 5666666655
No 355
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.06 E-value=2.1e-10 Score=112.52 Aligned_cols=160 Identities=20% Similarity=0.256 Sum_probs=93.3
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc-------------cceEEEEe
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT-------------DRFVVVMS 241 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t-------------~r~~i~~~ 241 (545)
+++.|+. ..++++++|+..+ +++|+|++|||||||++.|+|...| .++...- .+..+.+.
T Consensus 6 l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 6 LNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV---KSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred EEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 3445654 3588999998777 9999999999999999999998753 1111100 01123333
Q ss_pred CCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCce----eec-CCCCCC-hhhhhhhhccChHHHHH
Q 009050 242 GVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHIT----LVD-TPGVLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 242 ~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~----liD-TPG~~s-gekq~v~~~~~~~~ia~ 315 (545)
+++....++.++..+..+.+. ............++..+. ..| .++.+| |++|++. +++
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~---------~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~-------la~ 144 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLA---------ALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLA-------IAR 144 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHH---------hcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHH-------HHH
Confidence 443333332222100000000 000000111223333332 123 345567 8999988 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
+++.+|+++|+ .+|+.. ...+.+++.++.+. +..++++.|..
T Consensus 145 al~~~p~illlDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tii~~sH~~ 192 (230)
T TIGR03410 145 ALVTRPKLLLLDEPTEGIQPSI---IKDIGRVIRRLRAEGGMAILLVEQYL 192 (230)
T ss_pred HHhcCCCEEEecCCcccCCHHH---HHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 99999999999 566643 56677788777653 67888888843
No 356
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.06 E-value=3.3e-10 Score=112.73 Aligned_cols=156 Identities=26% Similarity=0.339 Sum_probs=94.4
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc--------------------
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-------------------- 234 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-------------------- 234 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...| .++.....
T Consensus 6 l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 6 VTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred EEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccccccccccccchh
Confidence 3445654 3488999998877 9999999999999999999998753 11111100
Q ss_pred -----ceEEEEeCCCccccCCceeEeecCCCCCCcccccccch--------hhhhhhcCchhhccCceeec----CCCCC
Q 009050 235 -----RFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFL--------SKFECSQMPHSLLEHITLVD----TPGVL 297 (545)
Q Consensus 235 -----r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~--------~~~~~~~~~~~lL~~v~liD----TPG~~ 297 (545)
+..+.+.++.....+..++ ..+... ..........++++.+.+-+ .|..+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv-------------~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 147 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTV-------------LDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQL 147 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcH-------------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhc
Confidence 1123333333222222221 111100 00011122344555555532 45667
Q ss_pred C-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 298 S-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 298 s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
| |++|++. ++++++.+|+++|+ .+|+.. ...+.+++..+.+ .+..++++.+..
T Consensus 148 S~G~~qrv~-------laral~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 148 SGGQQQRVA-------IARALAMRPKVMLFDEVTSALDPEL---VGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred CHHHHHHHH-------HHHHHHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 7 8999988 89999999999998 566543 4566677777755 367888888843
No 357
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.06 E-value=3.5e-10 Score=113.20 Aligned_cols=171 Identities=21% Similarity=0.266 Sum_probs=99.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCC------Cc-----------ccceE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPE------PT-----------TDRFV 237 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~------p~-----------t~r~~ 237 (545)
+++.|++ ..++++++|+..+ +++|+|++|||||||++.|+|...|....++. .. ..+..
T Consensus 10 l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 87 (262)
T PRK09984 10 LAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRAN 87 (262)
T ss_pred EEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhh
Confidence 3445654 3488999998776 99999999999999999999987431100110 00 00122
Q ss_pred EEEeCCCccccCCceeEeecCCCCCCcccc-cc--cchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccC
Q 009050 238 VVMSGVDDRSIPGNTVAVQADMPFSGLTTF-GT--AFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 238 i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~-~~--~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~ 309 (545)
+.+.++.....++.|+..+......+.... .. .... ........++++.+.+. | .++.+| |++|++.
T Consensus 88 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~---- 162 (262)
T PRK09984 88 TGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFT-REQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA---- 162 (262)
T ss_pred eEEEccccccccCCcHHHHHHhhhcccccchhhhccccc-HHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH----
Confidence 444455444444333311110000000000 00 0000 01112334455555553 3 557777 8999998
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
++++++.+|+++|+ .+|... ...+.+++..+.+ .+..++++.+..
T Consensus 163 ---laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tvii~tH~~ 213 (262)
T PRK09984 163 ---IARALMQQAKVILADEPIASLDPES---ARIVMDTLRDINQNDGITVVVTLHQV 213 (262)
T ss_pred ---HHHHHhcCCCEEEecCccccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 89999999999998 566653 5667788888764 467888888843
No 358
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.06 E-value=5.1e-10 Score=103.86 Aligned_cols=127 Identities=24% Similarity=0.359 Sum_probs=81.7
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEe
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAV 255 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~ 255 (545)
++.|++. +++++++|...+ +++|+|++|+|||||++.|+|...| .+. .+. +.|..+.
T Consensus 7 ~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G-------~v~--------~~g~~~~- 65 (163)
T cd03216 7 TKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP---DSG-------EIL--------VDGKEVS- 65 (163)
T ss_pred EEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCe-------EEE--------ECCEECC-
Confidence 4456553 488998888877 9999999999999999999998742 111 111 1111000
Q ss_pred ecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeC
Q 009050 256 QADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFD 329 (545)
Q Consensus 256 ~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD 329 (545)
..... . ..-..+.++.. +| |++|++. ++++++.+|+++|+ .+|
T Consensus 66 -------~~~~~-~-------------~~~~~i~~~~q---LS~G~~qrl~-------laral~~~p~illlDEP~~~LD 114 (163)
T cd03216 66 -------FASPR-D-------------ARRAGIAMVYQ---LSVGERQMVE-------IARALARNARLLILDEPTAALT 114 (163)
T ss_pred -------cCCHH-H-------------HHhcCeEEEEe---cCHHHHHHHH-------HHHHHhcCCCEEEEECCCcCCC
Confidence 00000 0 00012222211 66 8999988 89999999999998 555
Q ss_pred CCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 330 PHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 330 ~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
... ...+.++++++.+.+..++++.+.
T Consensus 115 ~~~---~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 115 PAE---VERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred HHH---HHHHHHHHHHHHHCCCEEEEEeCC
Confidence 543 456677887776667788888774
No 359
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.05 E-value=8.2e-10 Score=103.98 Aligned_cols=136 Identities=22% Similarity=0.385 Sum_probs=82.7
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccc--------
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-------- 247 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~-------- 247 (545)
++.|+. .+++++++|+..+ +++|+|++|+|||||++.|+|...| .+++ +.+.+.+...
T Consensus 7 ~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~-------i~~~g~~~~~~~~~~~~~ 74 (178)
T cd03229 7 SKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGS-------ILIDGEDLTDLEDELPPL 74 (178)
T ss_pred EEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceE-------EEECCEEccccchhHHHH
Confidence 345654 3488999988876 9999999999999999999998642 2111 1111110000
Q ss_pred cCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCC-CC-hhhhhhhhccChHHHHHHHhcCCCEEE
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGV-LS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~-~s-gekq~v~~~~~~~~ia~~~~~~aDliL 325 (545)
..+..+..+....+.+ .++.|.... +| |++|++. ++++++.+|+++|
T Consensus 75 ~~~i~~~~q~~~~~~~------------------------~t~~~~l~~~lS~G~~qr~~-------la~al~~~p~lli 123 (178)
T cd03229 75 RRRIGMVFQDFALFPH------------------------LTVLENIALGLSGGQQQRVA-------LARALAMDPDVLL 123 (178)
T ss_pred hhcEEEEecCCccCCC------------------------CCHHHheeecCCHHHHHHHH-------HHHHHHCCCCEEE
Confidence 0111111111110111 111111111 66 8999988 8999999999999
Q ss_pred E-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecC
Q 009050 326 L-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNK 359 (545)
Q Consensus 326 l-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK 359 (545)
+ .+|+.. ...+.+++..+.+. +..++++.|.
T Consensus 124 lDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tiii~sH~ 160 (178)
T cd03229 124 LDEPTSALDPIT---RREVRALLKSLQAQLGITVVLVTHD 160 (178)
T ss_pred EeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 8 566643 45677778777665 6777887773
No 360
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.05 E-value=2.4e-10 Score=124.69 Aligned_cols=169 Identities=14% Similarity=0.212 Sum_probs=101.0
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc-------cceEEEEeCCCc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT-------DRFVVVMSGVDD 245 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t-------~r~~i~~~~~~~ 245 (545)
++.|++ ..++++++|...+ +++|+|+||||||||++.|+|...| |.+ +.+.+.+ .+..+.+.+++.
T Consensus 5 ~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 82 (491)
T PRK10982 5 SKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQEL 82 (491)
T ss_pred EEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccc
Confidence 446665 3489999998876 9999999999999999999998754 211 1111100 012344445544
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
...+..|+..+..+..... .+ .+...........++++.+.+. | .++.+| |++|++. +|++++.+
T Consensus 83 ~~~~~~tv~~~l~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~-------lA~al~~~ 152 (491)
T PRK10982 83 NLVLQRSVMDNMWLGRYPT--KG-MFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIE-------IAKAFSYN 152 (491)
T ss_pred ccccCCCHHHHhhcccccc--cc-cccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHH-------HHHHHHhC
Confidence 3334333311111100000 00 0001111112234455555442 3 467778 8999998 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
|+++|+ .+|+.. ...+.+++..+...+..++++.|..+
T Consensus 153 p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tvii~tH~~~ 195 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKE---VNHLFTIIRKLKERGCGIVYISHKME 195 (491)
T ss_pred CCEEEEeCCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 999998 566643 56677778888767788888888644
No 361
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=2.7e-10 Score=115.56 Aligned_cols=158 Identities=27% Similarity=0.336 Sum_probs=94.8
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc--------ccceEEEEeCCCcc-ccCCce
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT--------TDRFVVVMSGVDDR-SIPGNT 252 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~--------t~r~~i~~~~~~~~-~~~g~t 252 (545)
.++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+. ..+..+.+.++++. .....|
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 589999998877 9999999999999999999998754 111 001000 11223344444321 111111
Q ss_pred eEeecCCCCCCcccccccchhhhhhhcCchhhccCcee-----ecC-CCCCC-hhhhhhhhccChHHHHHHHhcCCCEEE
Q 009050 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITL-----VDT-PGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (545)
Q Consensus 253 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~l-----iDT-PG~~s-gekq~v~~~~~~~~ia~~~~~~aDliL 325 (545)
+. ..+.+ +....+ ..+.+.......+++.+.+ .|+ |..+| |++||+. +|++++.+|+++|
T Consensus 101 v~--e~l~~-~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~-------iAraL~~~P~lll 167 (287)
T PRK13637 101 IE--KDIAF-GPINLG---LSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVA-------IAGVVAMEPKILI 167 (287)
T ss_pred HH--HHHHh-HHHHCC---CCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHH-------HHHHHHcCCCEEE
Confidence 10 00000 000000 0111122234455666555 343 56677 8999998 8999999999999
Q ss_pred E-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 326 L-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 326 l-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
+ .+|+.. ...+.+++..+.+. +..++++.+..
T Consensus 168 lDEPt~gLD~~~---~~~l~~~l~~l~~~~g~tvi~vtHd~ 205 (287)
T PRK13637 168 LDEPTAGLDPKG---RDEILNKIKELHKEYNMTIILVSHSM 205 (287)
T ss_pred EECCccCCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9 677753 56778888888654 77888888843
No 362
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.05 E-value=1.2e-10 Score=111.07 Aligned_cols=165 Identities=26% Similarity=0.333 Sum_probs=113.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC---CCCCcccceEEEEeCCCccccC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI---GPEPTTDRFVVVMSGVDDRSIP 249 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v---~~~p~t~r~~i~~~~~~~~~~~ 249 (545)
+++.|++++ ++++++|++.+ +.+++|+|||||||.+++|+|..-| |.+. ++.....+..+.+.+++....+
T Consensus 8 vtK~Fg~k~--av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~ 85 (300)
T COG4152 8 VTKSFGDKK--AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYP 85 (300)
T ss_pred chhccCcee--eecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCc
Confidence 345788876 99999999998 9999999999999999999998853 1111 1112233445666666555555
Q ss_pred CceeEeecCC--CCCCcccccccchhhhhhhcCchhhccCceeecCCCC----CC-hhhhhhhhccChHHHHHHHhcCCC
Q 009050 250 GNTVAVQADM--PFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGV----LS-GEKQRTQRAYDFTGVTSWFAAKCD 322 (545)
Q Consensus 250 g~t~~~~~~~--~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~----~s-gekq~v~~~~~~~~ia~~~~~~aD 322 (545)
-+|+..+..+ .+.|+ .+.+.......+|+++.+.+..+- +| |.+|.++ ...+.+++|+
T Consensus 86 k~tv~dql~yla~LkGm--------~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQ-------fisaviHePe 150 (300)
T COG4152 86 KMTVEDQLKYLAELKGM--------PKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQ-------FISAVIHEPE 150 (300)
T ss_pred cCcHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHH-------HHHHHhcCCC
Confidence 5554211100 01121 222334455567778887764432 33 7788887 5667899999
Q ss_pred EEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 323 LILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 323 liLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
++|+ ++||.+ .+-+.+.+..+++.|..|++--|.+.
T Consensus 151 LlILDEPFSGLDPVN---~elLk~~I~~lk~~GatIifSsH~Me 191 (300)
T COG4152 151 LLILDEPFSGLDPVN---VELLKDAIFELKEEGATIIFSSHRME 191 (300)
T ss_pred EEEecCCccCCChhh---HHHHHHHHHHHHhcCCEEEEecchHH
Confidence 9999 889887 57778889999999999999887554
No 363
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.05 E-value=3.4e-10 Score=106.53 Aligned_cols=138 Identities=21% Similarity=0.312 Sum_probs=83.1
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccc-----cCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-----IPG 250 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~-----~~g 250 (545)
++.|.....+++++++|+..+ +++|+|++|+|||||++.|+|...| .++ .+...+..... ...
T Consensus 7 ~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G-------~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 7 SFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP---QQG-------EITLDGVPVSDLEKALSSL 76 (178)
T ss_pred EEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCC-------EEEECCEEHHHHHHHHHhh
Confidence 345544212588999888877 9999999999999999999998742 221 11111110000 000
Q ss_pred ceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecC-CCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE--
Q 009050 251 NTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDT-PGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-- 326 (545)
Q Consensus 251 ~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDT-PG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-- 326 (545)
..+..+....+ ..++.|. ++.+| |++|++. ++++++.+|+++|+
T Consensus 77 i~~~~q~~~~~-------------------------~~tv~~~i~~~LS~G~~qrv~-------laral~~~p~~lllDE 124 (178)
T cd03247 77 ISVLNQRPYLF-------------------------DTTLRNNLGRRFSGGERQRLA-------LARILLQDAPIVLLDE 124 (178)
T ss_pred EEEEccCCeee-------------------------cccHHHhhcccCCHHHHHHHH-------HHHHHhcCCCEEEEEC
Confidence 11111100000 0011111 66777 7999988 89999999999998
Q ss_pred ---EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 327 ---LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 327 ---vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
.+|+.. .+.+.+++..+. .+..++++.|..+
T Consensus 125 P~~~LD~~~---~~~l~~~l~~~~-~~~tii~~sh~~~ 158 (178)
T cd03247 125 PTVGLDPIT---ERQLLSLIFEVL-KDKTLIWITHHLT 158 (178)
T ss_pred CcccCCHHH---HHHHHHHHHHHc-CCCEEEEEecCHH
Confidence 555542 456667777775 3677888877543
No 364
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.05 E-value=4e-10 Score=117.52 Aligned_cols=159 Identities=19% Similarity=0.267 Sum_probs=95.7
Q ss_pred ceeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCc----------ccceEEE
Q 009050 175 LEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPT----------TDRFVVV 239 (545)
Q Consensus 175 l~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~----------t~r~~i~ 239 (545)
+.+++.|+++. . +++|+..+ +++|+|++|||||||++.|+|...| |.+. ...+- ..+..+.
T Consensus 4 ~~l~k~~~~~~---~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 79 (352)
T PRK11144 4 LNFKQQLGDLC---L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG 79 (352)
T ss_pred EEEEEEeCCEE---E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE
Confidence 45566777532 2 67776654 9999999999999999999998754 1110 11000 0112233
Q ss_pred EeCCCccccCCceeEeecCCCCCCcccccccchh-hhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHH
Q 009050 240 MSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLS-KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGV 313 (545)
Q Consensus 240 ~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~-~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~i 313 (545)
+.+++....+..++ .++.... +........++++.+.+-+ .|+.+| |++||+. +
T Consensus 80 ~v~q~~~l~~~~tv-------------~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRva-------l 139 (352)
T PRK11144 80 YVFQDARLFPHYKV-------------RGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVA-------I 139 (352)
T ss_pred EEcCCcccCCCCcH-------------HHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHH-------H
Confidence 44444333333222 1111000 0011122344555555533 567788 8999998 8
Q ss_pred HHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 314 a~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
+++++.+|+++|+ .+|+.. ...+.+++..+.+. +.++++|.|..
T Consensus 140 araL~~~p~llLLDEPts~LD~~~---~~~l~~~L~~l~~~~g~tii~vTHd~ 189 (352)
T PRK11144 140 GRALLTAPELLLMDEPLASLDLPR---KRELLPYLERLAREINIPILYVSHSL 189 (352)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 9999999999998 566543 45667777777554 67888888854
No 365
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=5.1e-10 Score=109.97 Aligned_cols=155 Identities=20% Similarity=0.301 Sum_probs=90.6
Q ss_pred ccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc----cceEEEEeCCCccccCCceeEeecCCCC
Q 009050 191 NSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT----DRFVVVMSGVDDRSIPGNTVAVQADMPF 261 (545)
Q Consensus 191 ~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t----~r~~i~~~~~~~~~~~g~t~~~~~~~~~ 261 (545)
+++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+.+ .+..+.+.++.....++.++..+..+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 67777665 9999999999999999999998753 111 0111100 1223444455444444433311111111
Q ss_pred CCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCC
Q 009050 262 SGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPH 331 (545)
Q Consensus 262 ~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~ 331 (545)
.. + ............++++.+.+- | .|+.+| |++|++. ++++++.+|+++|+ .+|+.
T Consensus 97 ~~----~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~lllLDEP~~gLD~~ 163 (232)
T PRK10771 97 NP----G--LKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVA-------LARCLVREQPILLLDEPFSALDPA 163 (232)
T ss_pred cc----c--cCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHH-------HHHHHhcCCCEEEEeCCcccCCHH
Confidence 00 0 000001112234455555542 3 566777 8999988 89999999999999 56664
Q ss_pred CCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 332 KLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 332 ~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
. ...+.+++..+.. .+..++++.+..+
T Consensus 164 ~---~~~~~~~l~~~~~~~~~tiii~sH~~~ 191 (232)
T PRK10771 164 L---RQEMLTLVSQVCQERQLTLLMVSHSLE 191 (232)
T ss_pred H---HHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 3 4566777777754 4678888888433
No 366
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.05 E-value=2.1e-09 Score=104.26 Aligned_cols=98 Identities=16% Similarity=0.101 Sum_probs=59.1
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc--CCCeEEEEecCCCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRVVLNKADQVD 364 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~--~~~~iiiVlNK~D~~~ 364 (545)
.+.++||+|...- ..+...+...++.+++++|.++.........++..+.. .+.|+++|.||+|+.+
T Consensus 59 ~i~~~Dt~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 59 CFNVWDTAGQEKF-----------GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred EEEEEECCCchhh-----------hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 6789999996321 11234456789999999999863222333444444432 3578999999999864
Q ss_pred HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 365 TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 365 ~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.....+... + .+.. ....+.+||++|.++++
T Consensus 128 ~~~~~~~~~-~----~~~~---~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 128 RQVKARQIT-F----HRKK---NLQYYDISAKSNYNFEK 158 (215)
T ss_pred ccCCHHHHH-H----HHHc---CCEEEEEeCCCCCCHHH
Confidence 321111111 1 1111 12337899999998764
No 367
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.05 E-value=1.8e-09 Score=114.81 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=64.6
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCC-eEEEEecCCCCCC
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDD-KIRVVLNKADQVD 364 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~-~iiiVlNK~D~~~ 364 (545)
..++|+||||... |..-....+..+|++++++|+.......+..+.+..+...+. ++++|+||+|+.+
T Consensus 85 ~~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 85 RRVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred cEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 3789999999621 111223345678999999999862113444555555555554 6899999999987
Q ss_pred HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 365 TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 365 ~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.++.......+...+... ....++.+++||++|.|++.
T Consensus 154 ~~~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g~gI~~ 191 (411)
T PRK04000 154 KERALENYEQIKEFVKGT-VAENAPIIPVSALHKVNIDA 191 (411)
T ss_pred chhHHHHHHHHHHHhccc-cCCCCeEEEEECCCCcCHHH
Confidence 544332222221111111 11234458999999999764
No 368
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.05 E-value=5e-10 Score=111.87 Aligned_cols=162 Identities=23% Similarity=0.249 Sum_probs=94.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc------------cceEEEEeC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT------------DRFVVVMSG 242 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t------------~r~~i~~~~ 242 (545)
+++.|++ ..++++++|...+ +++|+|+||||||||++.|+|...| .++.... .+..+.+.+
T Consensus 8 l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (258)
T PRK13548 8 LSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRPLADWSPAELARRRAVLP 82 (258)
T ss_pred EEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEEcccCCHHHhhhheEEEc
Confidence 3445655 3489999988776 9999999999999999999998743 1111100 011233333
Q ss_pred CCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 243 VDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 243 ~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
++....+..++.......... .+ ............+++.+.+- | .++.+| |++|++. +++++
T Consensus 83 q~~~~~~~~tv~e~l~~~~~~---~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~-------la~al 149 (258)
T PRK13548 83 QHSSLSFPFTVEEVVAMGRAP---HG---LSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQ-------LARVL 149 (258)
T ss_pred cCCcCCCCCCHHHHHHhhhcc---cC---CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHH-------HHHHH
Confidence 332222222210000000000 00 00001112233455555553 2 467777 8999998 89999
Q ss_pred h------cCCCEEEE-----EeCCCCCCccHHHHHHHHHHh-cCCCeEEEEecC
Q 009050 318 A------AKCDLILL-----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNK 359 (545)
Q Consensus 318 ~------~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~-~~~~~iiiVlNK 359 (545)
+ .+|+++|+ .+|+.. ...+.+++..+. ..+..++++.|.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tiii~sH~ 200 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAH---QHHVLRLARQLAHERGLAVIVVLHD 200 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEECC
Confidence 8 48999988 566653 466777888776 567788888773
No 369
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=5.1e-10 Score=108.28 Aligned_cols=154 Identities=21% Similarity=0.279 Sum_probs=90.2
Q ss_pred ccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCC----cccceEEEEeCCCccccCCceeEeecCCCC
Q 009050 191 NSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEP----TTDRFVVVMSGVDDRSIPGNTVAVQADMPF 261 (545)
Q Consensus 191 ~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p----~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~ 261 (545)
+++|+..+ +++|+|+||||||||++.|+|...| |.+. ...+ ...+..+.+.+++....++.++..+..+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 67777665 9999999999999999999998754 1110 0100 001223445555444444433311111110
Q ss_pred CCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCC
Q 009050 262 SGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPH 331 (545)
Q Consensus 262 ~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~ 331 (545)
.. ..+ .. ........++++.+.+- | .|..+| |++|++. ++++++.+|+++|+ .+|+.
T Consensus 96 ~~--~~~---~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------ia~al~~~p~llllDEP~~~LD~~ 162 (211)
T cd03298 96 SP--GLK---LT-AEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVA-------LARVLVRDKPVLLLDEPFAALDPA 162 (211)
T ss_pred cc--ccC---cc-HHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHH-------HHHHHhcCCCEEEEcCCcccCCHH
Confidence 00 000 00 01111233445454442 3 456777 8999988 89999999999998 56665
Q ss_pred CCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 332 KLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 332 ~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
. ...+.+++.++.. .+..++++.|..
T Consensus 163 ~---~~~l~~~l~~~~~~~~~tii~~sH~~ 189 (211)
T cd03298 163 L---RAEMLDLVLDLHAETKMTVLMVTHQP 189 (211)
T ss_pred H---HHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3 4667777877754 467888888843
No 370
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=5.2e-10 Score=110.60 Aligned_cols=166 Identities=26% Similarity=0.304 Sum_probs=93.8
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc------ccceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT------TDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~------t~r~~i~~~~~~~ 245 (545)
+++.|+.. ..++++++|+..+ +++|+|+||+|||||++.|+|...| |.+ +...+. ..+..+.+.++..
T Consensus 6 l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 84 (242)
T cd03295 6 VTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQI 84 (242)
T ss_pred EEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCc
Confidence 34456541 2478999988876 9999999999999999999998753 111 001100 0012233334433
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee-----c-CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV-----D-TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li-----D-TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
...++.|+..+..+. ..+ .+ ...........++++.+.+- | .+..+| |++|++. ++++++
T Consensus 85 ~~~~~~tv~e~l~~~-~~~--~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~-------laral~ 151 (242)
T cd03295 85 GLFPHMTVEENIALV-PKL--LK---WPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVG-------VARALA 151 (242)
T ss_pred cccCCCcHHHHHHHH-HHH--cC---CCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHH-------HHHHHh
Confidence 333322221000000 000 00 00001112233444444442 3 346677 8999988 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNK 359 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK 359 (545)
.+|+++|+ .+|+.. ...+.+++..+... +..++++.|.
T Consensus 152 ~~p~llllDEPt~~LD~~~---~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 152 ADPPLLLMDEPFGALDPIT---RDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred cCCCEEEecCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEecC
Confidence 99999998 566543 45666777777653 6778888773
No 371
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=2.4e-10 Score=114.99 Aligned_cols=169 Identities=23% Similarity=0.344 Sum_probs=95.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc------ccceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT------TDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~------t~r~~i~~~~~~~ 245 (545)
.++.|+....+++++++|+..+ +++|+|++|||||||++.|+|...| |.+ +...+- ..+..+.+.+++.
T Consensus 13 l~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~ 92 (271)
T PRK13632 13 VSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNP 92 (271)
T ss_pred EEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCH
Confidence 3445532113588999988776 9999999999999999999998753 111 001010 0112233333332
Q ss_pred c-ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 246 R-SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 246 ~-~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
. ..++.|+..+..+. .... . ...........++++.+.+- | .|+.+| |++|++. ++++++.
T Consensus 93 ~~~~~~~tv~enl~~~---~~~~--~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral~~ 159 (271)
T PRK13632 93 DNQFIGATVEDDIAFG---LENK--K-VPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVA-------IASVLAL 159 (271)
T ss_pred HHhcCcccHHHHHHhH---HHHc--C-CCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHH-------HHHHHHc
Confidence 1 12222221000000 0000 0 00001112234445555543 3 456777 8999988 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCCC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKAD 361 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~D 361 (545)
+|+++|+ .+|+.. ...+.+++..+... +..++++.|..+
T Consensus 160 ~p~lllLDEP~~gLD~~~---~~~l~~~l~~~~~~~~~tiii~sH~~~ 204 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKG---KREIKKIMVDLRKTRKKTLISITHDMD 204 (271)
T ss_pred CCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCcEEEEEEechh
Confidence 9999999 566543 46677788877654 467888888543
No 372
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.04 E-value=4.3e-10 Score=107.99 Aligned_cols=142 Identities=19% Similarity=0.264 Sum_probs=83.9
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCcccc-------
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI------- 248 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~------- 248 (545)
++.|++ ..++++++|+..+ +++|+|++|||||||++.|+|.... .+.++ .+...+.+....
T Consensus 7 ~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~p~~G-------~i~~~g~~~~~~~~~~~~~ 76 (200)
T cd03217 7 HVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKY-EVTEG-------EILFKGEDITDLPPEERAR 76 (200)
T ss_pred EEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCCcc-------EEEECCEECCcCCHHHHhh
Confidence 345654 3489999998877 9999999999999999999997310 11111 111111110000
Q ss_pred CCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCC-CCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE
Q 009050 249 PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTP-GVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (545)
Q Consensus 249 ~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTP-G~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl 326 (545)
.+..+..+....+.+... .. +.+.. +.+| |++|++. ++++++.+|+++|+
T Consensus 77 ~~i~~v~q~~~~~~~~~~---------------~~------~l~~~~~~LS~G~~qrv~-------laral~~~p~illl 128 (200)
T cd03217 77 LGIFLAFQYPPEIPGVKN---------------AD------FLRYVNEGFSGGEKKRNE-------ILQLLLLEPDLAIL 128 (200)
T ss_pred CcEEEeecChhhccCccH---------------HH------HHhhccccCCHHHHHHHH-------HHHHHhcCCCEEEE
Confidence 001111111111111100 00 11222 4567 8999988 89999999999998
Q ss_pred -----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 327 -----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 327 -----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
.+|+.. ...+.+++..+.+.+..++++.|..
T Consensus 129 DEPt~~LD~~~---~~~l~~~L~~~~~~~~tiii~sh~~ 164 (200)
T cd03217 129 DEPDSGLDIDA---LRLVAEVINKLREEGKSVLIITHYQ 164 (200)
T ss_pred eCCCccCCHHH---HHHHHHHHHHHHHCCCEEEEEecCH
Confidence 455542 4566777877766677888888843
No 373
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.04 E-value=1.1e-09 Score=102.80 Aligned_cols=118 Identities=25% Similarity=0.243 Sum_probs=74.6
Q ss_pred eeEEeCCcccCccccc-ccccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEe
Q 009050 177 VTYRFNDFVSPLLTNS-DFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAV 255 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~-~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~ 255 (545)
+++.|++. .++.+. .+..+.+++|+|+||||||||+|.|+|...| .+.. +. +.|..+
T Consensus 6 l~~~~~~~--~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~-------i~--------~~g~~i-- 63 (177)
T cd03222 6 CVKRYGVF--FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP---NGDN-------DE--------WDGITP-- 63 (177)
T ss_pred eEEEECCE--EEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCC---CCcE-------EE--------ECCEEE--
Confidence 34466653 255553 3344459999999999999999999998742 2211 11 111000
Q ss_pred ecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeC
Q 009050 256 QADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFD 329 (545)
Q Consensus 256 ~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD 329 (545)
++ +...+. +| |++|++. ++++++.+++++++ .+|
T Consensus 64 -------~~-------------------------~~q~~~-LSgGq~qrv~-------laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 64 -------VY-------------------------KPQYID-LSGGELQRVA-------IAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred -------EE-------------------------EcccCC-CCHHHHHHHH-------HHHHHhcCCCEEEEECCcccCC
Confidence 00 000111 56 8999988 89999999999998 455
Q ss_pred CCCCCccHHHHHHHHHHhcCC-CeEEEEecC
Q 009050 330 PHKLDISDEFKRVITSLRGHD-DKIRVVLNK 359 (545)
Q Consensus 330 ~~~~~~~~~~~~~l~~L~~~~-~~iiiVlNK 359 (545)
+.. ...+.+++..+...+ ..++++.|.
T Consensus 104 ~~~---~~~l~~~l~~~~~~~~~tiiivsH~ 131 (177)
T cd03222 104 IEQ---RLNAARAIRRLSEEGKKTALVVEHD 131 (177)
T ss_pred HHH---HHHHHHHHHHHHHcCCCEEEEEECC
Confidence 542 455667777765554 678888773
No 374
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.04 E-value=5.2e-10 Score=110.95 Aligned_cols=163 Identities=21% Similarity=0.268 Sum_probs=92.1
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCcc--------c
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR--------S 247 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~--------~ 247 (545)
++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...|. +.. +....+...+.+.. .
T Consensus 8 ~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~~~----~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 8 NLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV-PGV----RIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC-cCC----CCceEEEECCEEccccccchHHH
Confidence 345654 3488999988876 99999999999999999999987421 000 00111111111100 0
Q ss_pred cCCceeEeecCCCCCCcccccccch--------hhhhhhcCchhhccCceee-------c-CCCCCC-hhhhhhhhccCh
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAFL--------SKFECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQRAYDF 310 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~~--------~~~~~~~~~~~lL~~v~li-------D-TPG~~s-gekq~v~~~~~~ 310 (545)
..+..+..+....+. .....+..+ ...........+++.+.+. | .++.+| |++|++.
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~----- 154 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLC----- 154 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHH-----
Confidence 011222222211111 111111100 0001112233444444443 3 456777 8999988
Q ss_pred HHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 311 ~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.+. ..++++.|.
T Consensus 155 --laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~-~tiiivsH~ 202 (247)
T TIGR00972 155 --IARALAVEPEVLLLDEPTSALDPIA---TGKIEELIQELKKK-YTIVIVTHN 202 (247)
T ss_pred --HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHhc-CeEEEEecC
Confidence 89999999999998 666653 45677778777663 677887773
No 375
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.04 E-value=4.7e-10 Score=112.00 Aligned_cols=155 Identities=20% Similarity=0.308 Sum_probs=95.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc--------------------
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-------------------- 234 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-------------------- 234 (545)
+++.|++ ..++++++|+..+ +++|+|++|+|||||++.|+|...| .++...-.
T Consensus 11 l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK10619 11 LHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGSIVVNGQTINLVRDKDGQLKVADKN 85 (257)
T ss_pred eEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcccccccccccccccch
Confidence 3445655 3488999998877 9999999999999999999998753 11111000
Q ss_pred -----ceEEEEeCCCccccCCceeEeecCCCCCCcccccccch--------hhhhhhcCchhhccCceee----c-CCCC
Q 009050 235 -----RFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFL--------SKFECSQMPHSLLEHITLV----D-TPGV 296 (545)
Q Consensus 235 -----r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~--------~~~~~~~~~~~lL~~v~li----D-TPG~ 296 (545)
+..+.+.+++....++ +...++... ..........++++.+.+- + .++.
T Consensus 86 ~~~~~~~~i~~v~q~~~l~~~-------------~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 152 (257)
T PRK10619 86 QLRLLRTRLTMVFQHFNLWSH-------------MTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVH 152 (257)
T ss_pred HHHHHhhceEEEecCcccCCC-------------CcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCccc
Confidence 1122333332222222 111111100 0011112234455555542 2 3566
Q ss_pred CC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 297 LS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 297 ~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+| |++|++. ++++++.+|+++|+ .+|+.. ...+.+++..+.+.+..+++|.|.
T Consensus 153 LS~G~~qrv~-------laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~l~~~g~tiiivsH~ 211 (257)
T PRK10619 153 LSGGQQQRVS-------IARALAMEPEVLLFDEPTSALDPEL---VGEVLRIMQQLAEEGKTMVVVTHE 211 (257)
T ss_pred CCHHHHHHHH-------HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEeCC
Confidence 77 8999988 89999999999998 566543 456777888887667888888884
No 376
>PRK13351 elongation factor G; Reviewed
Probab=99.04 E-value=7.2e-10 Score=125.65 Aligned_cols=140 Identities=21% Similarity=0.267 Sum_probs=84.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+|+|..|+|||||+++|+...- . +.........+..+.....+...|.|+... ..+.+.+
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g--~-~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~------------- 72 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTG--K-IHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN------------- 72 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcC--C-ccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC-------------
Confidence 3799999999999999999986431 1 111000000000111111111233333111 0111111
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiV 356 (545)
..++|+||||... |...+..++..+|.+++++|+.. +.......++..+...+.|+++|
T Consensus 73 ---------~~i~liDtPG~~d-----------f~~~~~~~l~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~~~p~iiv 131 (687)
T PRK13351 73 ---------HRINLIDTPGHID-----------FTGEVERSLRVLDGAVVVFDAVT-GVQPQTETVWRQADRYGIPRLIF 131 (687)
T ss_pred ---------EEEEEEECCCcHH-----------HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCEEEE
Confidence 3789999999843 22245566899999999999987 45666677778787788999999
Q ss_pred ecCCCCCCHHHHHHHHHHH
Q 009050 357 LNKADQVDTQQLMRVYGAL 375 (545)
Q Consensus 357 lNK~D~~~~~~l~~v~~~l 375 (545)
+||+|+... ++.+....+
T Consensus 132 iNK~D~~~~-~~~~~~~~i 149 (687)
T PRK13351 132 INKMDRVGA-DLFKVLEDI 149 (687)
T ss_pred EECCCCCCC-CHHHHHHHH
Confidence 999998753 333444444
No 377
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.04 E-value=3.7e-11 Score=111.39 Aligned_cols=156 Identities=24% Similarity=0.310 Sum_probs=104.7
Q ss_pred EeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--------CCCCCCCCcccceEEEEeCCCccccC
Q 009050 180 RFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--------GAHIGPEPTTDRFVVVMSGVDDRSIP 249 (545)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--------~~~v~~~p~t~r~~i~~~~~~~~~~~ 249 (545)
.|+. ..+++++++...+ +|+++|||||||||.+++++|.-.| +..++..|-..|. .-
T Consensus 13 ~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RA-----------rl 79 (243)
T COG1137 13 SYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA-----------RL 79 (243)
T ss_pred hhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHh-----------hc
Confidence 5666 3488999998877 9999999999999999999998864 1122222222211 22
Q ss_pred CceeEeecCCCCCCcccccccch-------hhh--hhhcCchhhccCceee---cCCCC-CC-hhhhhhhhccChHHHHH
Q 009050 250 GNTVAVQADMPFSGLTTFGTAFL-------SKF--ECSQMPHSLLEHITLV---DTPGV-LS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 250 g~t~~~~~~~~~~gl~~~~~~~~-------~~~--~~~~~~~~lL~~v~li---DTPG~-~s-gekq~v~~~~~~~~ia~ 315 (545)
|.....+...-|++++...+... .+. +.......+|+.+.+. |.||. +| ||+.|++ +||
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~E-------IAR 152 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVE-------IAR 152 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHH-------HHH
Confidence 34444444444555555444310 111 2222344677777664 55554 56 7888888 999
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
+++.+|..+|+ .+||-. ..+..+++..|+..|..+++-=|
T Consensus 153 aLa~~P~fiLLDEPFAGVDPia---V~dIq~iI~~L~~rgiGvLITDH 197 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIA---VIDIQRIIKHLKDRGIGVLITDH 197 (243)
T ss_pred HHhcCCCEEEecCCccCCCchh---HHHHHHHHHHHHhCCceEEEccc
Confidence 99999999999 788864 56788999999999988877433
No 378
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.04 E-value=4.2e-10 Score=112.83 Aligned_cols=170 Identities=16% Similarity=0.197 Sum_probs=96.7
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCc------ccceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPT------TDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~------t~r~~i~~~~~~~ 245 (545)
+++.|++ ..++++++|+..+ +++|+|++|||||||++.|+|...| |.+. .+.+. ..+..+.+.+++.
T Consensus 13 l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 90 (265)
T PRK10253 13 LTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90 (265)
T ss_pred EEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccC
Confidence 4456665 3489999999877 9999999999999999999998753 1110 00000 0012244444443
Q ss_pred cccCCceeEeecCCCCCCcccccccch-hhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFL-SKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~-~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
...++.++........... .+ .+. ..........++++.+.+- | .++.+| |++|++. ++++++.
T Consensus 91 ~~~~~~tv~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~-------laral~~ 160 (265)
T PRK10253 91 TTPGDITVQELVARGRYPH--QP-LFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAW-------IAMVLAQ 160 (265)
T ss_pred cCCCCCcHHHHHHhCcccc--cc-cccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHH-------HHHHHhc
Confidence 3333322210000000000 00 000 0001111223444444442 2 456677 8999988 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
+|+++|+ .+|+.. ...+.+++..+.+ .+..++++.|..+
T Consensus 161 ~p~llllDEPt~gLD~~~---~~~l~~~L~~l~~~~~~tiii~tH~~~ 205 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISH---QIDLLELLSELNREKGYTLAAVLHDLN 205 (265)
T ss_pred CCCEEEEeCccccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999998 566543 4567777877765 3678888887433
No 379
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=1.5e-09 Score=107.88 Aligned_cols=157 Identities=24% Similarity=0.303 Sum_probs=92.2
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCC--CCCCCCCc------------ccceEEEE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPG--AHIGPEPT------------TDRFVVVM 240 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~--~~v~~~p~------------t~r~~i~~ 240 (545)
+++.|++ ..++++++|+..+ +++|+|++|||||||++.|+|...|. .+.++... ..+..+.+
T Consensus 9 l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 86 (250)
T PRK14247 9 LKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQM 86 (250)
T ss_pred eEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEE
Confidence 3446665 3488999998776 99999999999999999999986310 01111100 00112223
Q ss_pred eCCCccccCCceeEeecCCCCCCcccccccch---------hhhhhhcCchhhccCcee-------ec-CCCCCC-hhhh
Q 009050 241 SGVDDRSIPGNTVAVQADMPFSGLTTFGTAFL---------SKFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQ 302 (545)
Q Consensus 241 ~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~---------~~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq 302 (545)
.++.....+..|+ ..+..+ ...+......++++.+.+ .| .++.+| |++|
T Consensus 87 v~q~~~~~~~~tv-------------~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 87 VFQIPNPIPNLSI-------------FENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred EeccCccCCCCcH-------------HHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHH
Confidence 3332222222221 111100 000111122344444443 23 356677 8999
Q ss_pred hhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 303 RTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 303 ~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++. ++++++.+|+++|+ .+|+.. ...+.+++..+.. +..++++.+.
T Consensus 154 rv~-------laral~~~p~lllLDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiii~sH~ 204 (250)
T PRK14247 154 RLC-------IARALAFQPEVLLADEPTANLDPEN---TAKIESLFLELKK-DMTIVLVTHF 204 (250)
T ss_pred HHH-------HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhc-CCEEEEEeCC
Confidence 988 89999999999998 566653 5667778877754 6677777774
No 380
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.03 E-value=1.7e-09 Score=115.73 Aligned_cols=106 Identities=18% Similarity=0.138 Sum_probs=68.7
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCC-eEEEEecCCCCCC
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDD-KIRVVLNKADQVD 364 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~-~iiiVlNK~D~~~ 364 (545)
..++|+||||.. . |..-+...+..+|.+++++|+.......+..+.+..+...+. ++++|+||+|+++
T Consensus 117 ~~i~~IDtPGH~----~-------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 117 RHVSFVDCPGHD----I-------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK 185 (460)
T ss_pred ceEeeeeCCCHH----H-------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC
Confidence 478999999962 1 222334457799999999999862234444444444444444 6899999999997
Q ss_pred HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 365 TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 365 ~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.+.+.+.+..+...+.... ...++.+++||++|.|++.
T Consensus 186 ~~~~~~~~~ei~~~l~~~~-~~~~~iipVSA~~G~nI~~ 223 (460)
T PTZ00327 186 EAQAQDQYEEIRNFVKGTI-ADNAPIIPISAQLKYNIDV 223 (460)
T ss_pred HHHHHHHHHHHHHHHHhhc-cCCCeEEEeeCCCCCCHHH
Confidence 6666555554432222211 2334558999999998764
No 381
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=4.6e-10 Score=112.94 Aligned_cols=166 Identities=21% Similarity=0.324 Sum_probs=93.8
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc--------ccceEEEEeCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT--------TDRFVVVMSGV 243 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~--------t~r~~i~~~~~ 243 (545)
+++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ ..+.+- ..+..+.+.++
T Consensus 7 l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 84 (271)
T PRK13638 7 LWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQ 84 (271)
T ss_pred EEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEee
Confidence 3446665 3489999988876 9999999999999999999998753 111 001000 00112233333
Q ss_pred Cccc-cCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 244 DDRS-IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 244 ~~~~-~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
+... ....++. ....+ +....+ ............+++.+.+- + .++.+| |++|++. +++++
T Consensus 85 ~~~~~~~~~~~~--~~l~~-~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~-------laraL 151 (271)
T PRK13638 85 DPEQQIFYTDID--SDIAF-SLRNLG---VPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVA-------IAGAL 151 (271)
T ss_pred ChhhccccccHH--HHHHH-HHHHcC---CCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHH-------HHHHH
Confidence 2110 0000000 00000 000000 00001111223344444442 3 456777 8999988 89999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
+.+|+++|+ .+|+.. ...+.+++..+...+..++++.|..
T Consensus 152 ~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~g~tii~vtH~~ 196 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAG---RTQMIAIIRRIVAQGNHVIISSHDI 196 (271)
T ss_pred HcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 999999999 566643 4667788888776677888888843
No 382
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.03 E-value=2.3e-10 Score=111.99 Aligned_cols=163 Identities=21% Similarity=0.264 Sum_probs=92.5
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHccc-----CC--CCC-CCCCCc--------ccceEEE
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS-----YP--GAH-IGPEPT--------TDRFVVV 239 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~-----~p--~~~-v~~~p~--------t~r~~i~ 239 (545)
++.|+. ..++++++|+..+ +++|+|++|||||||++.|+|.. .| |.+ +.+.+- ..+..+.
T Consensus 7 ~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 84 (227)
T cd03260 7 NVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVG 84 (227)
T ss_pred EEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEE
Confidence 445654 3488999988776 99999999999999999999987 43 110 001000 0011233
Q ss_pred EeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---cC---CCCCC-hhhhhhhhccChHH
Q 009050 240 MSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---DT---PGVLS-GEKQRTQRAYDFTG 312 (545)
Q Consensus 240 ~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---DT---PG~~s-gekq~v~~~~~~~~ 312 (545)
+.+++.... ..|+..+..+... ..+ ............++++.+.+. +. |+.+| |++|++.
T Consensus 85 ~~~q~~~~~-~~tv~e~l~~~~~---~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~------- 151 (227)
T cd03260 85 MVFQKPNPF-PGSIYDNVAYGLR---LHG--IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLC------- 151 (227)
T ss_pred EEecCchhc-cccHHHHHHhHHH---hcC--CCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHH-------
Confidence 333332222 1111000000000 000 000000112233445555443 32 47788 8999988
Q ss_pred HHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 313 VTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 313 ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.+. ..++++.|.
T Consensus 152 la~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~-~tii~~sH~ 199 (227)
T cd03260 152 LARALANEPEVLLLDEPTSALDPIS---TAKIEELIAELKKE-YTIVIVTHN 199 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHhhC-cEEEEEecc
Confidence 89999999999998 566643 56677788777665 677777773
No 383
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.03 E-value=6.4e-10 Score=108.81 Aligned_cols=156 Identities=22% Similarity=0.258 Sum_probs=88.7
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc---------------ccceEEEEeCCCcc--c
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT---------------TDRFVVVMSGVDDR--S 247 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~---------------t~r~~i~~~~~~~~--~ 247 (545)
.++++++|+..+ +++|+|+||||||||++.|+|...| .++... ..+..+.+.+++.. .
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP---TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 588999988776 9999999999999999999998753 111110 01112333333221 1
Q ss_pred cCCceeEeecCCCCCCcccccccchhhhhhhcC-chhhccCceee----c-CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQM-PHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~-~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
.+..++..+ +.+ +....+. ......... ..++++.+.+. + .++.+| |++|++. ++++++.+
T Consensus 96 ~~~~tv~~n--l~~-~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~-------laral~~~ 163 (228)
T cd03257 96 NPRMTIGEQ--IAE-PLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVA-------IARALALN 163 (228)
T ss_pred CCcCCHHHH--HHH-HHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHH-------HHHHHhcC
Confidence 111111000 000 0000000 000000011 12444454442 3 456677 8999998 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
|+++|+ .+|+.. ...+.+++..+... +..++++.|..
T Consensus 164 p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 164 PKLLIADEPTSALDVSV---QAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred CCEEEecCCCCCCCHHH---HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 999998 566543 46677777777654 67888888853
No 384
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.03 E-value=2.4e-09 Score=107.80 Aligned_cols=120 Identities=18% Similarity=0.303 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.+|+|+|.+|+||||++|.|+|... ..++....++....... ....|
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~v--~~vs~f~s~t~~~~~~~-----------------~~~~G-------------- 85 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGERI--ATVSAFQSEGLRPMMVS-----------------RTRAG-------------- 85 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCcceeEEEEE-----------------EEECC--------------
Confidence 4799999999999999999999986 55655433322221100 00112
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHh--cCCCEEEEE--eCCCCCCccHHHHHHHHHHhcC----
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFA--AKCDLILLL--FDPHKLDISDEFKRVITSLRGH---- 349 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~--~~aDliLlv--lD~~~~~~~~~~~~~l~~L~~~---- 349 (545)
..+.+|||||+.++.. ..+. .....+.++ ..+|++|++ +|... ..+.+..+++.+...
T Consensus 86 --------~~l~VIDTPGL~d~~~--~~e~--~~~~ik~~l~~~g~DvVLyV~rLD~~R--~~~~DkqlLk~Iqe~FG~~ 151 (313)
T TIGR00991 86 --------FTLNIIDTPGLIEGGY--INDQ--AVNIIKRFLLGKTIDVLLYVDRLDAYR--VDTLDGQVIRAITDSFGKD 151 (313)
T ss_pred --------eEEEEEECCCCCchHH--HHHH--HHHHHHHHhhcCCCCEEEEEeccCccc--CCHHHHHHHHHHHHHhhhh
Confidence 2789999999987421 1110 111233332 369999999 45443 445555666655432
Q ss_pred -CCeEEEEecCCCCCC
Q 009050 350 -DDKIRVVLNKADQVD 364 (545)
Q Consensus 350 -~~~iiiVlNK~D~~~ 364 (545)
-..+++|++++|...
T Consensus 152 iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 152 IWRKSLVVLTHAQFSP 167 (313)
T ss_pred hhccEEEEEECCccCC
Confidence 236899999999773
No 385
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.03 E-value=3.2e-09 Score=108.82 Aligned_cols=99 Identities=22% Similarity=0.215 Sum_probs=58.0
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCH
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~ 365 (545)
..+.|+||+|+...+. ..+..+|++++++++.. .++...+..... ...-++|+||+|+.+.
T Consensus 149 ~d~viieT~Gv~qs~~--------------~i~~~aD~vlvv~~p~~---gd~iq~~k~gi~--E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 149 YDVILVETVGVGQSET--------------AVAGMVDFFLLLQLPGA---GDELQGIKKGIM--ELADLIVINKADGDNK 209 (332)
T ss_pred CCEEEEECCCCccchh--------------HHHHhCCEEEEEecCCc---hHHHHHHHhhhh--hhhheEEeehhcccch
Confidence 3688999999974321 12567999999987543 233322222111 1234899999999875
Q ss_pred HHHHHHHHHHHHHhcccc---cCCccEEEEeeccCCCccCc
Q 009050 366 QQLMRVYGALMWSLGKVL---NTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 366 ~~l~~v~~~l~~~l~k~~---~~~~v~~v~iSa~~~~~~~~ 403 (545)
....+....+...+...- ..-.++.+++||.++.|+++
T Consensus 210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIde 250 (332)
T PRK09435 210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDE 250 (332)
T ss_pred hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHH
Confidence 443333333322222111 01123448999999999987
No 386
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.03 E-value=4.2e-10 Score=109.09 Aligned_cols=156 Identities=17% Similarity=0.254 Sum_probs=88.3
Q ss_pred ccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc----ccceEEEEeCCCccccCCceeEeecCC
Q 009050 189 LTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT----TDRFVVVMSGVDDRSIPGNTVAVQADM 259 (545)
Q Consensus 189 l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~----t~r~~i~~~~~~~~~~~g~t~~~~~~~ 259 (545)
+.+++|+..+ .++|+|++|+|||||++.|+|...| |.+ +...+. ..+..+.+.++.....++.++..+..+
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 3567777665 9999999999999999999998753 110 000000 011223344443333333222111000
Q ss_pred CCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeC
Q 009050 260 PFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFD 329 (545)
Q Consensus 260 ~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD 329 (545)
.+.. . ............++++.+.+- + .|..+| |++|++. ++++++.+|+++|+ .+|
T Consensus 94 ~~~~-----~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral~~~p~llllDEPt~~LD 160 (213)
T TIGR01277 94 GLHP-----G-LKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVA-------LARCLVRPNPILLLDEPFSALD 160 (213)
T ss_pred Hhhc-----c-CCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHH-------HHHHHhcCCCEEEEcCCCccCC
Confidence 0000 0 000001112233455555553 3 456677 8999988 89999999999988 555
Q ss_pred CCCCCccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 330 PHKLDISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 330 ~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
... ...+.+++..+.+. +..++++.+..
T Consensus 161 ~~~---~~~~~~~l~~~~~~~~~tii~vsh~~ 189 (213)
T TIGR01277 161 PLL---REEMLALVKQLCSERQRTLLMVTHHL 189 (213)
T ss_pred HHH---HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 543 45667788877653 67888888843
No 387
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=4.8e-10 Score=113.80 Aligned_cols=148 Identities=20% Similarity=0.241 Sum_probs=92.9
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc----------------cceEEEEeCCCcccc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT----------------DRFVVVMSGVDDRSI 248 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t----------------~r~~i~~~~~~~~~~ 248 (545)
.++++++|+..+ +++|+|+||||||||+++|+|...| .++.... .+..+.+.++...
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~-- 95 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP---SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPE-- 95 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEECccccccchHHHHHhceEEEEeChh--
Confidence 489999998877 9999999999999999999998754 1111100 0112233333210
Q ss_pred CCceeEeecCCCCCCcccccccch-------hhhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhccChHHHHH
Q 009050 249 PGNTVAVQADMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 249 ~g~t~~~~~~~~~~gl~~~~~~~~-------~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia~ 315 (545)
..+.......+..+ ..........++++.+.+. + .++.+| |++||+. +++
T Consensus 96 ----------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~-------lar 158 (287)
T PRK13641 96 ----------AQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVA-------IAG 158 (287)
T ss_pred ----------hhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHH-------HHH
Confidence 00101111111100 0111122344556666553 2 467788 8999998 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|.
T Consensus 159 al~~~p~lLlLDEPt~gLD~~~---~~~l~~~l~~l~~~g~tvlivsH~ 204 (287)
T PRK13641 159 VMAYEPEILCLDEPAAGLDPEG---RKEMMQLFKDYQKAGHTVILVTHN 204 (287)
T ss_pred HHHcCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEeCC
Confidence 99999999999 666653 567778888887667888888884
No 388
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=2.6e-10 Score=115.36 Aligned_cols=169 Identities=24% Similarity=0.385 Sum_probs=96.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc------c------cceEEEEeC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT------T------DRFVVVMSG 242 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~------t------~r~~i~~~~ 242 (545)
.++.|......++++++|+..+ +++|+|++|||||||++.|+|...|....++... . .+..+.+.+
T Consensus 11 l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~ 90 (282)
T PRK13640 11 VSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVF 90 (282)
T ss_pred EEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEE
Confidence 3445643223489999988877 9999999999999999999998753110001100 0 011222333
Q ss_pred CCcc-ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHH
Q 009050 243 VDDR-SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (545)
Q Consensus 243 ~~~~-~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~ 316 (545)
++.. ..+..|+..+ +.+ +....+ ............+++.+.+-+ .|..+| |++|++. ++++
T Consensus 91 q~~~~~~~~~tv~en--l~~-~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~-------lara 157 (282)
T PRK13640 91 QNPDNQFVGATVGDD--VAF-GLENRA---VPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVA-------IAGI 157 (282)
T ss_pred ECHHHhhccCCHHHH--HHh-hHHhCC---CCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHH-------HHHH
Confidence 3221 1111111000 000 000000 000111122344555555543 567777 8999988 8999
Q ss_pred HhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCCC
Q 009050 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKAD 361 (545)
Q Consensus 317 ~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~D 361 (545)
++.+|+++|+ .+|+.. ...+.+++..+.+. +..++++.|..+
T Consensus 158 l~~~P~llllDEPt~gLD~~~---~~~l~~~l~~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAG---KEQILKLIRKLKKKNNLTVISITHDID 205 (282)
T ss_pred HHcCCCEEEEECCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 9999999999 566643 45667778777653 778888888543
No 389
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=1.3e-09 Score=107.03 Aligned_cols=168 Identities=17% Similarity=0.234 Sum_probs=92.7
Q ss_pred EEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCC------cccceEEEEeCCCccc
Q 009050 179 YRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEP------TTDRFVVVMSGVDDRS 247 (545)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p------~t~r~~i~~~~~~~~~ 247 (545)
+.|+.....++++++|+..+ +++|+|+||||||||++.|+|...| |.+. ...+ ...+..+.+.+++...
T Consensus 8 ~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 87 (234)
T cd03251 8 FRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFL 87 (234)
T ss_pred EEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCee
Confidence 35543212478999888766 9999999999999999999999854 1110 0100 0012234444544333
Q ss_pred cCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCc-----eeec-CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI-----TLVD-TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v-----~liD-TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
.++ ++..+ +.+... .................+.++.+ ...+ .++.+| |++|++. ++++++.+
T Consensus 88 ~~~-tv~en--l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~ 156 (234)
T cd03251 88 FND-TVAEN--IAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIA-------IARALLKD 156 (234)
T ss_pred ccc-cHHHH--hhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHH-------HHHHHhcC
Confidence 332 22100 100000 00000000000001112222222 1223 456677 8999988 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
|+++|+ .+|+.. .+.+.+++..+.+ +..++++.|..+
T Consensus 157 p~lllLDEP~~~LD~~~---~~~l~~~l~~~~~-~~tii~~sh~~~ 198 (234)
T cd03251 157 PPILILDEATSALDTES---ERLVQAALERLMK-NRTTFVIAHRLS 198 (234)
T ss_pred CCEEEEeCccccCCHHH---HHHHHHHHHHhcC-CCEEEEEecCHH
Confidence 999998 566643 5667777877764 677888888543
No 390
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.03 E-value=2.6e-09 Score=109.96 Aligned_cols=161 Identities=26% Similarity=0.317 Sum_probs=116.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCcee-EeecCCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV-AVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~-~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.||||-.---|||||+..|+.+.- .... ...-..-+|.+.+.+...|.|. ..+....|++.
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSG---tf~~--~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~------------- 68 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSG---TFRE--REEVAERVMDSNDLEKERGITILAKNTAVNYNGT------------- 68 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhcc---cccc--ccchhhhhcCccchhhhcCcEEEeccceeecCCe-------------
Confidence 589999999999999999997762 1111 1111223566777777889888 44555666663
Q ss_pred hcCchhhccCceeecCCCCCC--hhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~s--gekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
.++++||||.-+ ||-+|+ +.-.|-+++++|+.. +.-.+.+-+++..-+.+.+-|+
T Consensus 69 ---------~INIvDTPGHADFGGEVERv-------------l~MVDgvlLlVDA~E-GpMPQTrFVlkKAl~~gL~PIV 125 (603)
T COG1217 69 ---------RINIVDTPGHADFGGEVERV-------------LSMVDGVLLLVDASE-GPMPQTRFVLKKALALGLKPIV 125 (603)
T ss_pred ---------EEEEecCCCcCCccchhhhh-------------hhhcceEEEEEEccc-CCCCchhhhHHHHHHcCCCcEE
Confidence 899999999976 554433 477899999999987 5667777888877777888899
Q ss_pred EecCCCCCC--HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCc
Q 009050 356 VLNKADQVD--TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKP 400 (545)
Q Consensus 356 VlNK~D~~~--~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~ 400 (545)
|+||+|..+ ++++....-.++-.++.....-+.+.+|.|+..|.-
T Consensus 126 VvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a 172 (603)
T COG1217 126 VINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTA 172 (603)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCcee
Confidence 999999875 344443333456666665555556678999999874
No 391
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.03 E-value=2.8e-10 Score=112.41 Aligned_cols=155 Identities=25% Similarity=0.327 Sum_probs=108.6
Q ss_pred cccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCC----------------cccceEEEEeCCCccccC
Q 009050 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP----------------TTDRFVVVMSGVDDRSIP 249 (545)
Q Consensus 188 ~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p----------------~t~r~~i~~~~~~~~~~~ 249 (545)
.+.+++|+.+. +.+|+|-+|||||||+++|.+..-| ++++. ...+..+.|.+|++...|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep---t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP---TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC---CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 45566777655 9999999999999999999988754 22211 123556788999999999
Q ss_pred CceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEE
Q 009050 250 GNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (545)
Q Consensus 250 g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDli 324 (545)
..|+..+..+ |+...| +.+.+....+.+.|+.+.|-+ .|..+| |++||+. +||+++.+||++
T Consensus 120 hrtVl~Nv~f---GLev~G---v~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVG-------LARAla~~~~Il 186 (386)
T COG4175 120 HRTVLENVAF---GLEVQG---VPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVG-------LARALANDPDIL 186 (386)
T ss_pred chhHhhhhhc---ceeecC---CCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHH-------HHHHHccCCCEE
Confidence 8887544433 222222 234455666777888888876 799999 7999998 899999999999
Q ss_pred EE-----EeCCCCCCccHHHHHHHHHH-hcCCCeEEEEecCCC
Q 009050 325 LL-----LFDPHKLDISDEFKRVITSL-RGHDDKIRVVLNKAD 361 (545)
Q Consensus 325 Ll-----vlD~~~~~~~~~~~~~l~~L-~~~~~~iiiVlNK~D 361 (545)
|+ .+||- +..+..+-+-+| ++.++++++|.|..|
T Consensus 187 LMDEaFSALDPL---IR~~mQdeLl~Lq~~l~KTIvFitHDLd 226 (386)
T COG4175 187 LMDEAFSALDPL---IRTEMQDELLELQAKLKKTIVFITHDLD 226 (386)
T ss_pred EecCchhhcChH---HHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 99 45553 234444333333 445678999988444
No 392
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=4.7e-10 Score=111.82 Aligned_cols=167 Identities=22% Similarity=0.294 Sum_probs=94.7
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc------ccceEEEEeCCCcc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT------TDRFVVVMSGVDDR 246 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~------t~r~~i~~~~~~~~ 246 (545)
++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+. ..+..+.+.+++..
T Consensus 9 ~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 86 (255)
T PRK11231 9 TVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHL 86 (255)
T ss_pred EEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCC
Confidence 445665 3589999988776 9999999999999999999998643 110 000000 00122444444433
Q ss_pred ccCCceeEeecCCCCCCcc-cccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 247 SIPGNTVAVQADMPFSGLT-TFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~-~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
..++.++.....+...... .++. . ..........+++.+.+- | .++.+| |++|++. ++++++.+
T Consensus 87 ~~~~~tv~~~i~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~ 156 (255)
T PRK11231 87 TPEGITVRELVAYGRSPWLSLWGR--L-SAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAF-------LAMVLAQD 156 (255)
T ss_pred CCCCccHHHHHHhccchhhhhccC--C-CHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHH-------HHHHHhcC
Confidence 3333222100000000000 0000 0 000111223344444432 3 456677 8999988 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
|+++|+ .+|+.. ...+.+++..+...+..++++.|.
T Consensus 157 p~llllDEP~~~LD~~~---~~~l~~~l~~l~~~~~tiii~tH~ 197 (255)
T PRK11231 157 TPVVLLDEPTTYLDINH---QVELMRLMRELNTQGKTVVTVLHD 197 (255)
T ss_pred CCEEEEcCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEECC
Confidence 999998 566543 466677777776667788888884
No 393
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.03 E-value=4.8e-10 Score=105.17 Aligned_cols=126 Identities=22% Similarity=0.280 Sum_probs=78.3
Q ss_pred cCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCC-CCCC-CcccceEEEEeCCCccccCCceeEeecCCCC
Q 009050 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAH-IGPE-PTTDRFVVVMSGVDDRSIPGNTVAVQADMPF 261 (545)
Q Consensus 186 ~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~-v~~~-p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~ 261 (545)
.+++++++|+..+ +++|+|+||||||||+|.+++.. |.. +... +...+..+.+..+
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~--G~v~~~~~~~~~~~~~~~~~~q------------------ 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYAS--GKARLISFLPKFSRNKLIFIDQ------------------ 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcC--CcEEECCcccccccccEEEEhH------------------
Confidence 4578888888877 99999999999999999997421 110 0000 0000000110000
Q ss_pred CCcccccccchhhhhhhcCchhhccCcee-----ecCCCCCC-hhhhhhhhccChHHHHHHHhcC--CCEEEE-----Ee
Q 009050 262 SGLTTFGTAFLSKFECSQMPHSLLEHITL-----VDTPGVLS-GEKQRTQRAYDFTGVTSWFAAK--CDLILL-----LF 328 (545)
Q Consensus 262 ~gl~~~~~~~~~~~~~~~~~~~lL~~v~l-----iDTPG~~s-gekq~v~~~~~~~~ia~~~~~~--aDliLl-----vl 328 (545)
.++++.+.+ -..++.+| |++|++. ++++++.+ |+++|+ .+
T Consensus 68 --------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~-------laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 --------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVK-------LASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred --------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHH-------HHHHHhhCCCCCEEEEeCCcccC
Confidence 112222222 22456677 7899888 89999999 998888 45
Q ss_pred CCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 329 DPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 329 D~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
|+.. ...+.+.++.+.+.+..++++.|..+
T Consensus 121 D~~~---~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 121 HQQD---INQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CHHH---HHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 5442 45566777777666788888888543
No 394
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.03 E-value=7e-10 Score=110.04 Aligned_cols=171 Identities=16% Similarity=0.243 Sum_probs=91.8
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHccc--CC--CCC-CCCCCcc-------cceEEEEeCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS--YP--GAH-IGPEPTT-------DRFVVVMSGV 243 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~--~p--~~~-v~~~p~t-------~r~~i~~~~~ 243 (545)
++.|++ .+++++++|...+ +++|+|++|||||||++.|+|.. .| |.+ +...+.+ .+..+.+.++
T Consensus 8 ~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 85 (248)
T PRK09580 8 HVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQ 85 (248)
T ss_pred EEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEec
Confidence 445654 3489999988776 99999999999999999999984 12 111 0111100 0112333333
Q ss_pred CccccCCceeEeecCCCCCCcccc-cccchhhhhhhcCchhhccCcee----ecCCC--CCC-hhhhhhhhccChHHHHH
Q 009050 244 DDRSIPGNTVAVQADMPFSGLTTF-GTAFLSKFECSQMPHSLLEHITL----VDTPG--VLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 244 ~~~~~~g~t~~~~~~~~~~gl~~~-~~~~~~~~~~~~~~~~lL~~v~l----iDTPG--~~s-gekq~v~~~~~~~~ia~ 315 (545)
.....+..+...........+... .................++.+.+ .+.+. .+| |++|++. +++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~-------lar 158 (248)
T PRK09580 86 YPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND-------ILQ 158 (248)
T ss_pred CchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHH-------HHH
Confidence 322222111000000000000000 00000000111112233333333 23332 466 8999988 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
+++.+|+++|+ .+|+.. ...+.+++..++..+..++++.|..
T Consensus 159 al~~~p~illLDEPt~~LD~~~---~~~l~~~l~~l~~~~~tiii~sH~~ 205 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDA---LKIVADGVNSLRDGKRSFIIVTHYQ 205 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 99999999998 566543 4566777777776677888888843
No 395
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.02 E-value=1.8e-09 Score=111.13 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=52.9
Q ss_pred CceeecCCCCCC-hh--hhhhhh-----------ccChHHH----HHHHhc-CCCEEEEEe-CCCC-----CCccHHHHH
Q 009050 287 HITLVDTPGVLS-GE--KQRTQR-----------AYDFTGV----TSWFAA-KCDLILLLF-DPHK-----LDISDEFKR 341 (545)
Q Consensus 287 ~v~liDTPG~~s-ge--kq~v~~-----------~~~~~~i----a~~~~~-~aDliLlvl-D~~~-----~~~~~~~~~ 341 (545)
.+.|+||+|+.. |. ..+..+ ...|... ++..+. ++|+.|++. |++- .+..+...+
T Consensus 92 ~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~ 171 (492)
T TIGR02836 92 KVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEER 171 (492)
T ss_pred cEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHH
Confidence 789999999976 21 011111 1223222 345566 999999998 8851 123556678
Q ss_pred HHHHHhcCCCeEEEEecCCCCC
Q 009050 342 VITSLRGHDDKIRVVLNKADQV 363 (545)
Q Consensus 342 ~l~~L~~~~~~iiiVlNK~D~~ 363 (545)
++..|++.++|+++|+||+|-.
T Consensus 172 ~i~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 172 VIEELKELNKPFIILLNSTHPY 193 (492)
T ss_pred HHHHHHhcCCCEEEEEECcCCC
Confidence 9999999999999999999943
No 396
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=7.1e-10 Score=106.63 Aligned_cols=143 Identities=19% Similarity=0.249 Sum_probs=81.8
Q ss_pred cCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCcc-----ccCCceeEeecC
Q 009050 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR-----SIPGNTVAVQAD 258 (545)
Q Consensus 186 ~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~-----~~~g~t~~~~~~ 258 (545)
..++++++|...+ +++|+|++|||||||++.|+|...|..+.++. +.+.+.... ......+..+..
T Consensus 20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~-------i~i~g~~~~~~~~~~~~~i~~~~q~~ 92 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD-------IHYNGIPYKEFAEKYPGEIIYVSEED 92 (202)
T ss_pred ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceE-------EEECCEECccchhhhcceEEEEeccc
Confidence 4588999988877 99999999999999999999987411022221 111111000 011122222221
Q ss_pred CCCCCcccccccchhhhhhhcCchhhccCceeec-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCC
Q 009050 259 MPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPH 331 (545)
Q Consensus 259 ~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~ 331 (545)
..+.++....+.... . ... .+ .++.+| |++|++. ++++++.+|+++|+ .+|+.
T Consensus 93 ~~~~~~tv~~~l~~~--------~----~~~-~~~~~~~LS~Ge~qrl~-------laral~~~p~llllDEPt~~LD~~ 152 (202)
T cd03233 93 VHFPTLTVRETLDFA--------L----RCK-GNEFVRGISGGERKRVS-------IAEALVSRASVLCWDNSTRGLDSS 152 (202)
T ss_pred ccCCCCcHHHHHhhh--------h----hhc-cccchhhCCHHHHHHHH-------HHHHHhhCCCEEEEcCCCccCCHH
Confidence 112122111111000 0 000 22 345566 8999988 89999999999888 56654
Q ss_pred CCCccHHHHHHHHHHhcC-CCeEEEEec
Q 009050 332 KLDISDEFKRVITSLRGH-DDKIRVVLN 358 (545)
Q Consensus 332 ~~~~~~~~~~~l~~L~~~-~~~iiiVlN 358 (545)
. ...+.+++..+.+. +..++++.+
T Consensus 153 ~---~~~~~~~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 153 T---ALEILKCIRTMADVLKTTTFVSLY 177 (202)
T ss_pred H---HHHHHHHHHHHHHhCCCEEEEEEc
Confidence 3 45677778777654 455666665
No 397
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=5.9e-10 Score=114.68 Aligned_cols=155 Identities=20% Similarity=0.317 Sum_probs=93.5
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc----------------------------cce
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT----------------------------DRF 236 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t----------------------------~r~ 236 (545)
+++++++|...+ +++|+|++|||||||++.|+|...| .++.... .+.
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p---~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS---KYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEEECCEEcccccccccccccccccccchHHHHHh
Confidence 489999998877 9999999999999999999998754 1111100 112
Q ss_pred EEEEeCCCc--cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhcc
Q 009050 237 VVVMSGVDD--RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAY 308 (545)
Q Consensus 237 ~i~~~~~~~--~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~ 308 (545)
.+.+.++++ ...++ ++. ..+.+ +....+ ....+......++++.+.+- + .|..+| |++||+.
T Consensus 117 ~ig~v~Q~~~~~l~~~-tv~--eni~~-~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRva--- 186 (320)
T PRK13631 117 RVSMVFQFPEYQLFKD-TIE--KDIMF-GPVALG---VKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVA--- 186 (320)
T ss_pred cEEEEEECchhccccc-hHH--HHHHh-hHHhcC---CCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHH---
Confidence 233333322 11111 110 00000 000000 01111222334455555553 2 456677 8999998
Q ss_pred ChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 309 ~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+|++++.+|+++|+ .+|+.. ...+.+++..+...+..++++.|..+
T Consensus 187 ----iAraL~~~p~iLLLDEPtsgLD~~~---~~~l~~~L~~l~~~g~TiiivtHd~~ 237 (320)
T PRK13631 187 ----IAGILAIQPEILIFDEPTAGLDPKG---EHEMMQLILDAKANNKTVFVITHTME 237 (320)
T ss_pred ----HHHHHHcCCCEEEEECCccCCCHHH---HHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 89999999999999 666653 56677888877666788899888544
No 398
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=3.3e-10 Score=124.08 Aligned_cols=169 Identities=18% Similarity=0.223 Sum_probs=99.9
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCC------cc-------cceEEEEe
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP------TT-------DRFVVVMS 241 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p------~t-------~r~~i~~~ 241 (545)
+++.|++ ..++++++|+..+ +++|+|+||||||||+|.|+|...|+ ..++.. .+ .+..+.+.
T Consensus 11 l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (506)
T PRK13549 11 ITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAII 87 (506)
T ss_pred eEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEE
Confidence 4456665 3489999998877 99999999999999999999987420 011110 00 01223344
Q ss_pred CCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHH
Q 009050 242 GVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSW 316 (545)
Q Consensus 242 ~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~ 316 (545)
+++....+..|+.....+... ....+ ............++++.+.+- | .++.+| |++||+. +|++
T Consensus 88 ~q~~~~~~~~tv~e~l~~~~~-~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~-------la~a 157 (506)
T PRK13549 88 HQELALVKELSVLENIFLGNE-ITPGG--IMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE-------IAKA 157 (506)
T ss_pred EeccccCCCCcHHHHhhhccc-ccccC--CcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH-------HHHH
Confidence 443333333222111000000 00000 000011112334556666553 2 456777 8999998 8999
Q ss_pred HhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 317 ~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
++.+|+++|+ .+|+.. ..++.+++..+.+.+..++++.|..+
T Consensus 158 l~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~~~tvi~~tH~~~ 204 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESE---TAVLLDIIRDLKAHGIACIYISHKLN 204 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 9999999998 666653 56677888888766778888888543
No 399
>PRK12740 elongation factor G; Reviewed
Probab=99.02 E-value=1.5e-09 Score=122.91 Aligned_cols=125 Identities=19% Similarity=0.216 Sum_probs=80.1
Q ss_pred EcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhhhhhhcCc
Q 009050 203 LGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSKFECSQMP 281 (545)
Q Consensus 203 vG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~~~~~~~~ 281 (545)
+|+.|+|||||+++|+...- .+... ........++.....+..+|.|+... ..+.+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g--~i~~~-~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~------------------ 59 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTG--AIHRI-GEVEDGTTTMDFMPEERERGISITSAATTCEWKG------------------ 59 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcC--CCccC-ccccCCcccCCCChHHHhcCCCeeeceEEEEECC------------------
Confidence 69999999999999976542 22211 00111111222222333456655221 1222222
Q ss_pred hhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 282 HSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 282 ~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
..++++||||..+ |...+...+..+|++++++|+.. +.......++..+...+.|+++|+||+|
T Consensus 60 ----~~i~liDtPG~~~-----------~~~~~~~~l~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~D 123 (668)
T PRK12740 60 ----HKINLIDTPGHVD-----------FTGEVERALRVLDGAVVVVCAVG-GVEPQTETVWRQAEKYGVPRIIFVNKMD 123 (668)
T ss_pred ----EEEEEEECCCcHH-----------HHHHHHHHHHHhCeEEEEEeCCC-CcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 2789999999853 11234456789999999999987 5566667777777778899999999999
Q ss_pred CCC
Q 009050 362 QVD 364 (545)
Q Consensus 362 ~~~ 364 (545)
...
T Consensus 124 ~~~ 126 (668)
T PRK12740 124 RAG 126 (668)
T ss_pred CCC
Confidence 875
No 400
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.02 E-value=4.9e-11 Score=110.13 Aligned_cols=163 Identities=26% Similarity=0.348 Sum_probs=103.6
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCC--------c
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVD--------D 245 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~--------~ 245 (545)
.++.+|+.|. ++++.+|...+ .-+||||||||||||+..|+|...|. . ..+.++++. .
T Consensus 10 ~vsVsF~GF~--Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~-------G~v~f~g~~dl~~~~e~~ 77 (249)
T COG4674 10 GVSVSFGGFK--ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---E-------GEVLFDGDTDLTKLPEHR 77 (249)
T ss_pred ceEEEEccee--eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---c-------ceEEEcCchhhccCCHHH
Confidence 3566899988 99999999888 88999999999999999999988641 1 111222211 0
Q ss_pred cccCCceeEeecCCCCCCcccccccc-------------hhhh--hhhcCchhhccCceeec----CCCCCC-hhhhhhh
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAF-------------LSKF--ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQ 305 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~-------------~~~~--~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~ 305 (545)
....|..+.++....|..+..+.+.. ..+. +......++|..+.+-| .+|.+| |+||+++
T Consensus 78 IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLE 157 (249)
T COG4674 78 IARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLE 157 (249)
T ss_pred HHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhh
Confidence 11224444444444444444443321 1122 33346677888888877 778888 9999988
Q ss_pred hccChHHHHHHHhcCCCEEEEEeCCCCCCcc----HHHHHHHHHHhcCCCeEEEEecCC
Q 009050 306 RAYDFTGVTSWFAAKCDLILLLFDPHKLDIS----DEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 306 ~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~----~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
+..-.+++|+++++ |-.-.+.+ ...-++++.+++ .+.+++|-+.+
T Consensus 158 -------IGMll~Q~P~lLLl--DEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM 206 (249)
T COG4674 158 -------IGMLLAQDPKLLLL--DEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDM 206 (249)
T ss_pred -------hheeeccCCcEEEe--cCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccH
Confidence 44456899998876 32211333 344567777765 36777777743
No 401
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.02 E-value=1.4e-10 Score=113.30 Aligned_cols=152 Identities=21% Similarity=0.238 Sum_probs=88.0
Q ss_pred EeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec
Q 009050 180 RFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA 257 (545)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~ 257 (545)
.|+. ..++++++|+..+ +++|+|++|||||||++.|+|...| .++........+..........+
T Consensus 31 ~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~-------- 97 (224)
T cd03220 31 EVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVTVRGRVSSLLGLGGGFNP-------- 97 (224)
T ss_pred hcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEchhhcccccCCC--------
Confidence 5665 3488898888877 9999999999999999999998642 22211111000000000000001
Q ss_pred CCCCCCcccccccch-------hhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEE
Q 009050 258 DMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (545)
Q Consensus 258 ~~~~~gl~~~~~~~~-------~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliL 325 (545)
......+... ..........++++.+.+- | .++.+| |++|++. ++++++.+|+++|
T Consensus 98 -----~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------laral~~~p~lll 165 (224)
T cd03220 98 -----ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLA-------FAIATALEPDILL 165 (224)
T ss_pred -----CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEE
Confidence 1111111000 0001111223334344432 3 446777 8999988 8999999999999
Q ss_pred E-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 326 L-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 326 l-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+ .+|+.. ...+.+++..+...+..++++.+.
T Consensus 166 lDEP~~gLD~~~---~~~~~~~l~~~~~~~~tiii~sH~ 201 (224)
T cd03220 166 IDEVLAVGDAAF---QEKCQRRLRELLKQGKTVILVSHD 201 (224)
T ss_pred EeCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEeCC
Confidence 9 566643 456777787776656788888774
No 402
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.02 E-value=6.6e-10 Score=110.84 Aligned_cols=165 Identities=20% Similarity=0.221 Sum_probs=95.4
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc------------cceEEEEeCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT------------DRFVVVMSGV 243 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t------------~r~~i~~~~~ 243 (545)
++.|++ ..++++++|...+ +++|+|+||+|||||++.|+|...| .++.... .+..+.+.++
T Consensus 8 ~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (256)
T TIGR03873 8 SWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP---DAGTVDLAGVDLHGLSRRARARRVALVEQ 82 (256)
T ss_pred EEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEEcccCCHHHHhhheEEecc
Confidence 345655 3489999998877 9999999999999999999998743 1111100 0112333444
Q ss_pred CccccCCceeEeecCCCCCCcccccccch-hhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 244 DDRSIPGNTVAVQADMPFSGLTTFGTAFL-SKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 244 ~~~~~~g~t~~~~~~~~~~gl~~~~~~~~-~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
+....+..++..+..... . .....+. ..........++++.+.+- | .++.+| |++|++. +++++
T Consensus 83 ~~~~~~~~tv~e~l~~~~--~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al 152 (256)
T TIGR03873 83 DSDTAVPLTVRDVVALGR--I-PHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVH-------VARAL 152 (256)
T ss_pred cCccCCCCCHHHHHHhcc--h-hhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH-------HHHHH
Confidence 332222222110000000 0 0000000 0001111233445555443 3 456677 8999988 89999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
+.+|+++|+ .+|+.. ...+.+++..+++.+..++++.|..
T Consensus 153 ~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiii~sH~~ 197 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRA---QLETLALVRELAATGVTVVAALHDL 197 (256)
T ss_pred hcCCCEEEEcCccccCCHHH---HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999999 566643 5667788888876677888888843
No 403
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=6.9e-10 Score=107.62 Aligned_cols=158 Identities=22% Similarity=0.279 Sum_probs=93.2
Q ss_pred eeeEEeCCcccCcccccccccCc-eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc----------ccceEEEEe
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT----------TDRFVVVMS 241 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~-~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~----------t~r~~i~~~ 241 (545)
.++++|++.. + +++|+..+ +++|+|+||+|||||++.|+|...| |.+ +.+.+. ..+..+.+.
T Consensus 5 ~l~~~~~~~~--~--~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRLPDFT--L--KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEecCCee--e--CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 4566787643 3 77776655 9999999999999999999998753 111 011100 001123333
Q ss_pred CCCccccCCceeEeecCCCCCCcccccccch-h----hhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChH
Q 009050 242 GVDDRSIPGNTVAVQADMPFSGLTTFGTAFL-S----KFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFT 311 (545)
Q Consensus 242 ~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~-~----~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~ 311 (545)
++.....++.++ ..+..+ . .........++++.+.+. + .++.+| |++|++.
T Consensus 81 ~q~~~~~~~~t~-------------~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~------ 141 (214)
T cd03297 81 FQQYALFPHLNV-------------RENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVA------ 141 (214)
T ss_pred ecCCccCCCCCH-------------HHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHH------
Confidence 333222222222 111100 0 001112234455555543 3 456777 8999988
Q ss_pred HHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 312 ~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+... +..++++.|..
T Consensus 142 -la~al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tiii~sH~~ 192 (214)
T cd03297 142 -LARALAAQPELLLLDEPFSALDRAL---RLQLLPELKQIKKNLNIPVIFVTHDL 192 (214)
T ss_pred -HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHHcCcEEEEEecCH
Confidence 89999999999998 566543 45667777777654 67888888843
No 404
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.02 E-value=8.4e-10 Score=107.72 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=92.7
Q ss_pred EEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc--cceEEEEeCCCccccCCc
Q 009050 179 YRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT--DRFVVVMSGVDDRSIPGN 251 (545)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t--~r~~i~~~~~~~~~~~g~ 251 (545)
+.|+. ..++++++|...+ +++|+|+||+|||||++.|+|...| |.+ +...+.+ ....+.+.++.....+..
T Consensus 8 ~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 85 (223)
T TIGR03740 8 KRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENL 85 (223)
T ss_pred EEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccC
Confidence 35554 3488999888766 9999999999999999999998643 110 0000000 011223333322222211
Q ss_pred eeEeecCCCCCCcccccccch-hhh--hhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCE
Q 009050 252 TVAVQADMPFSGLTTFGTAFL-SKF--ECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (545)
Q Consensus 252 t~~~~~~~~~~gl~~~~~~~~-~~~--~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDl 323 (545)
+ ...+... ... ........+++.+.+- | .++.+| |++|++. ++++++.+|++
T Consensus 86 t-------------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~-------laral~~~p~l 145 (223)
T TIGR03740 86 T-------------ARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLG-------IAIALLNHPKL 145 (223)
T ss_pred C-------------HHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHH-------HHHHHhcCCCE
Confidence 1 1111100 000 0011233445555553 2 356677 8999888 89999999999
Q ss_pred EEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 324 ILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 324 iLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+|+ .+|+.. ...+.+++..+...+..++++.|.
T Consensus 146 lllDEP~~~LD~~~---~~~l~~~L~~~~~~~~tiii~sH~ 183 (223)
T TIGR03740 146 LILDEPTNGLDPIG---IQELRELIRSFPEQGITVILSSHI 183 (223)
T ss_pred EEECCCccCCCHHH---HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 998 566653 567778888876667788888884
No 405
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.7e-10 Score=121.61 Aligned_cols=157 Identities=21% Similarity=0.297 Sum_probs=94.8
Q ss_pred cccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc----------cceEEEEeCCCccccCCce
Q 009050 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT----------DRFVVVMSGVDDRSIPGNT 252 (545)
Q Consensus 188 ~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t----------~r~~i~~~~~~~~~~~g~t 252 (545)
++++++|+..+ +++|+|++|||||||++.|+|...| |.+ +...+-+ .+..+.+.+++....++.|
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 67888888776 9999999999999999999998854 111 0111100 0123444455444444333
Q ss_pred eEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-
Q 009050 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL- 326 (545)
Q Consensus 253 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl- 326 (545)
+..+..+.. ...+ ...........++++.+.+-+ .|..+| |++||+. ++++++.+|+++|+
T Consensus 123 v~enl~~~~---~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~-------LArAL~~~P~iLLLD 189 (400)
T PRK10070 123 VLDNTAFGM---ELAG---INAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVG-------LARALAINPDILLMD 189 (400)
T ss_pred HHHHHHHHH---HhcC---CCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHH-------HHHHHhcCCCEEEEE
Confidence 211110000 0000 001111223345556665532 577888 7999998 89999999999999
Q ss_pred ----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 327 ----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 327 ----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
.+|+.. ...+.+++..+.. .+..++++.|..
T Consensus 190 EPts~LD~~~---r~~l~~~L~~l~~~~g~TIIivTHd~ 225 (400)
T PRK10070 190 EAFSALDPLI---RTEMQDELVKLQAKHQRTIVFISHDL 225 (400)
T ss_pred CCCccCCHHH---HHHHHHHHHHHHHHCCCeEEEEECCH
Confidence 566643 5667777777754 477888888843
No 406
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.02 E-value=3.8e-10 Score=116.54 Aligned_cols=157 Identities=15% Similarity=0.252 Sum_probs=96.2
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccc--------cC--CceeE
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--------IP--GNTVA 254 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~--------~~--g~t~~ 254 (545)
.++++++|+..+ +++|+|++|||||||+++|+|...|...+ ...+.+.+.+... .. ...+.
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~-------sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v 102 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRI-------GGSATFNGREILNLPEKELNKLRAEQISMI 102 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCC-------CeEEEECCEECCcCCHHHHHHHhcCCEEEE
Confidence 489999998877 99999999999999999999987431101 1222222221110 11 22233
Q ss_pred eecCC-CCCCcccccccc---------hhhhhhhcCchhhccCceeec-------CCCCCC-hhhhhhhhccChHHHHHH
Q 009050 255 VQADM-PFSGLTTFGTAF---------LSKFECSQMPHSLLEHITLVD-------TPGVLS-GEKQRTQRAYDFTGVTSW 316 (545)
Q Consensus 255 ~~~~~-~~~gl~~~~~~~---------~~~~~~~~~~~~lL~~v~liD-------TPG~~s-gekq~v~~~~~~~~ia~~ 316 (545)
.+... .+....+.+..+ ..+.+......++|+.+.+-+ .|..+| |++||+. +|++
T Consensus 103 ~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~-------IArA 175 (330)
T PRK09473 103 FQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVM-------IAMA 175 (330)
T ss_pred EcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHH-------HHHH
Confidence 33221 111111112111 011112233445566665532 577788 7999998 8999
Q ss_pred HhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 317 ~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
++.+|+++|+ .+|+.. ..++.+++..+++. +..+++|.|..
T Consensus 176 L~~~P~llilDEPts~LD~~~---~~~i~~lL~~l~~~~g~til~iTHdl 222 (330)
T PRK09473 176 LLCRPKLLIADEPTTALDVTV---QAQIMTLLNELKREFNTAIIMITHDL 222 (330)
T ss_pred HHcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 9999999999 566653 56777888888654 77888888843
No 407
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.02 E-value=9.4e-10 Score=109.41 Aligned_cols=172 Identities=17% Similarity=0.236 Sum_probs=92.2
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHccc--CC--CCC-CCCCC-----c-c-cceEEEEeCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS--YP--GAH-IGPEP-----T-T-DRFVVVMSGV 243 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~--~p--~~~-v~~~p-----~-t-~r~~i~~~~~ 243 (545)
++.|++ ..++++++|+..+ +++|+|++|||||||++.|+|.. .| |.+ +...+ . . .+..+.+.++
T Consensus 14 ~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q 91 (252)
T CHL00131 14 HASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQ 91 (252)
T ss_pred EEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEec
Confidence 445654 2489999998877 99999999999999999999962 11 110 00000 0 0 0011223333
Q ss_pred CccccCCceeEeecCCCCCCcccc-cccchhhhhhhcCchhhccCcee----ec-CCC-CCC-hhhhhhhhccChHHHHH
Q 009050 244 DDRSIPGNTVAVQADMPFSGLTTF-GTAFLSKFECSQMPHSLLEHITL----VD-TPG-VLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 244 ~~~~~~g~t~~~~~~~~~~gl~~~-~~~~~~~~~~~~~~~~lL~~v~l----iD-TPG-~~s-gekq~v~~~~~~~~ia~ 315 (545)
.....++.+........+...... +..-...........++++.+.+ .| .++ .+| |++|++. +++
T Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~-------la~ 164 (252)
T CHL00131 92 YPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE-------ILQ 164 (252)
T ss_pred cccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH-------HHH
Confidence 332233222100000000000000 00000000001122334444443 23 454 377 8999988 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+++.+|+++|+ .+|+.. ...+.+++..+...+..++++.|..+
T Consensus 165 al~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 165 MALLDSELAILDETDSGLDIDA---LKIIAEGINKLMTSENSIILITHYQR 212 (252)
T ss_pred HHHcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 99999999998 455542 45667778777666778888888543
No 408
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.02 E-value=9e-10 Score=108.50 Aligned_cols=167 Identities=16% Similarity=0.240 Sum_probs=93.3
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc------ccceEEEEeCCCcc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT------TDRFVVVMSGVDDR 246 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~------t~r~~i~~~~~~~~ 246 (545)
.+.|+.-...++++++|+..+ +++|+|++|||||||++.|+|...| |.+ +...+. ..+..+.+.+++..
T Consensus 7 ~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 86 (237)
T cd03252 7 RFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENV 86 (237)
T ss_pred EEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCch
Confidence 345542123478899888766 9999999999999999999999754 111 011110 11233455555443
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCc--ee---e-cCCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI--TL---V-DTPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v--~l---i-DTPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
..+. |+..+......+. ....+..........+++..+ .+ . ..++.+| |++|++. ++++++.
T Consensus 87 ~~~~-tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~-------laral~~ 155 (237)
T cd03252 87 LFNR-SIRDNIALADPGM---SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIA-------IARALIH 155 (237)
T ss_pred hccc-hHHHHhhccCCCC---CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHH-------HHHHHhh
Confidence 3322 2211101100000 000000000001112223222 11 1 2456777 8999998 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+|+++|+ .+|+.. ...+.+++..+.+ +..++++.|.
T Consensus 156 ~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiii~sH~ 196 (237)
T cd03252 156 NPRILIFDEATSALDYES---EHAIMRNMHDICA-GRTVIIIAHR 196 (237)
T ss_pred CCCEEEEeCCcccCCHHH---HHHHHHHHHHhcC-CCEEEEEeCC
Confidence 9999998 566653 5667777777764 6778888773
No 409
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.02 E-value=2.1e-09 Score=100.03 Aligned_cols=132 Identities=19% Similarity=0.175 Sum_probs=79.6
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc-ceEEEEeCCCccccCCceeE
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-RFVVVMSGVDDRSIPGNTVA 254 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-r~~i~~~~~~~~~~~g~t~~ 254 (545)
++.|... ...+++++|+..+ +++|+|++|||||||++.|+|...| .+....-. +..+.+..++..
T Consensus 7 ~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~-------- 74 (166)
T cd03223 7 SLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPY-------- 74 (166)
T ss_pred EEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCc--------
Confidence 3355321 3488999998777 9999999999999999999998742 22211100 112222222111
Q ss_pred eecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----Ee
Q 009050 255 VQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LF 328 (545)
Q Consensus 255 ~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vl 328 (545)
+......+ .+.+. .+..+| |++|++. ++++++.+|+++|+ .+
T Consensus 75 ------~~~~tv~~------------------nl~~~-~~~~LS~G~~~rv~-------laral~~~p~~lllDEPt~~L 122 (166)
T cd03223 75 ------LPLGTLRE------------------QLIYP-WDDVLSGGEQQRLA-------FARLLLHKPKFVFLDEATSAL 122 (166)
T ss_pred ------cccccHHH------------------Hhhcc-CCCCCCHHHHHHHH-------HHHHHHcCCCEEEEECCcccc
Confidence 00111111 11110 356677 7999988 89999999999998 56
Q ss_pred CCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 329 DPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 329 D~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
|+.. ...+.+++..+ +..++++.|.
T Consensus 123 D~~~---~~~l~~~l~~~---~~tiiivsh~ 147 (166)
T cd03223 123 DEES---EDRLYQLLKEL---GITVISVGHR 147 (166)
T ss_pred CHHH---HHHHHHHHHHh---CCEEEEEeCC
Confidence 6543 34444555543 5677777774
No 410
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=5.5e-10 Score=113.28 Aligned_cols=155 Identities=22% Similarity=0.312 Sum_probs=93.9
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc----------------cceEEEEeCCCcc--
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT----------------DRFVVVMSGVDDR-- 246 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t----------------~r~~i~~~~~~~~-- 246 (545)
+++++++|+..+ +++|+|+||||||||++.|+|...| .++.... .+..+.+.++++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP---TTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEECccccccchHHHHHhheEEEecChHhc
Confidence 589999999887 9999999999999999999998753 1111100 1122333333221
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
..+. |+. ..+.+ +....+ ...........++++.+.+- | .|..+| |++|++. +|++++.+
T Consensus 98 l~~~-tv~--e~i~~-~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~-------laraL~~~ 163 (286)
T PRK13646 98 LFED-TVE--REIIF-GPKNFK---MNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIA-------IVSILAMN 163 (286)
T ss_pred cchh-hHH--HHHHh-hHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH-------HHHHHHhC
Confidence 1111 110 00000 000000 01111223345566666653 2 356677 8999988 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
|+++|+ .+|+.. ...+.+++..+.. .+.+++++.|..+
T Consensus 164 p~illlDEPt~~LD~~~---~~~l~~~l~~l~~~~g~tvl~vtH~~~ 207 (286)
T PRK13646 164 PDIIVLDEPTAGLDPQS---KRQVMRLLKSLQTDENKTIILVSHDMN 207 (286)
T ss_pred CCEEEEECCcccCCHHH---HHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 999999 566653 5677788888765 4788899888544
No 411
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.02 E-value=4.1e-10 Score=123.25 Aligned_cols=170 Identities=22% Similarity=0.265 Sum_probs=101.4
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc-------cceEEEEeCCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT-------DRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t-------~r~~i~~~~~~ 244 (545)
+++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+.+ .+..+.+.++.
T Consensus 10 l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~ 87 (501)
T PRK11288 10 IGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQE 87 (501)
T ss_pred eEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEec
Confidence 4446655 3488999998877 9999999999999999999998754 211 1111100 12234444454
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
....++.|+..+..+..... ..+ +...........++++.+.+- + .|+.+| |++|++. ++++++.
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~-------laral~~ 157 (501)
T PRK11288 88 LHLVPEMTVAENLYLGQLPH-KGG--IVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVE-------IAKALAR 157 (501)
T ss_pred hhccCCCCHHHHHHhccccc-ccC--CCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHH-------HHHHHHh
Confidence 44344333311111100000 000 000111112234455555553 2 467778 8999998 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|..+
T Consensus 158 ~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~g~tiiiitHd~~ 201 (501)
T PRK11288 158 NARVIAFDEPTSSLSARE---IEQLFRVIRELRAEGRVILYVSHRME 201 (501)
T ss_pred CCCEEEEcCCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 9999998 666653 46677788887766788888888543
No 412
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.01 E-value=4.3e-10 Score=111.88 Aligned_cols=157 Identities=19% Similarity=0.188 Sum_probs=91.4
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc-ceEEEEeCCCccccCCceeE
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-RFVVVMSGVDDRSIPGNTVA 254 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-r~~i~~~~~~~~~~~g~t~~ 254 (545)
++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| .++..... +..+.+.+++....+..+..
T Consensus 11 ~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p---~~G~i~~~~~~~i~~v~q~~~~~~~l~~~ 85 (251)
T PRK09544 11 SVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP---DEGVIKRNGKLRIGYVPQKLYLDTTLPLT 85 (251)
T ss_pred EEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCccCEEEeccccccccccChh
Confidence 445654 3488999888776 9999999999999999999998742 22211110 11233333332211110000
Q ss_pred eecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE---
Q 009050 255 VQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL--- 326 (545)
Q Consensus 255 ~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl--- 326 (545)
. .................+++.+.+- | .++.+| |++|++. ++++++.+|+++|+
T Consensus 86 ~-----------~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~-------laral~~~p~lllLDEP 147 (251)
T PRK09544 86 V-----------NRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVL-------LARALLNRPQLLVLDEP 147 (251)
T ss_pred H-----------HHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCC
Confidence 0 0000000000001122344444442 3 456677 8999988 89999999999988
Q ss_pred --EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 327 --LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 327 --vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
.+|+.. ...+.+++..+... +..++++.+..
T Consensus 148 t~~LD~~~---~~~l~~~L~~~~~~~g~tiiivsH~~ 181 (251)
T PRK09544 148 TQGVDVNG---QVALYDLIDQLRRELDCAVLMVSHDL 181 (251)
T ss_pred CcCCCHHH---HHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 555542 45666777777554 67888888853
No 413
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.01 E-value=4.1e-10 Score=116.30 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=94.9
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc---------------cceEEEEeCCCc--cc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT---------------DRFVVVMSGVDD--RS 247 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t---------------~r~~i~~~~~~~--~~ 247 (545)
.++++++|+..+ +++|+|++|||||||+++|+|...| .++.... .+..+.+.+|++ ..
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p---~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l 111 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA---TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASL 111 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC---CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhc
Confidence 478999998877 9999999999999999999998753 2211100 012233333332 11
Q ss_pred cCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee-----cCCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV-----DTPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li-----DTPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
.+..++..+... ++..++.. ..+.+......++++.+.+. ..|+.+| |++||+. +|++++.+|
T Consensus 112 ~p~~tv~~~i~~---~l~~~~~~-~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~-------iArAL~~~P 180 (331)
T PRK15079 112 NPRMTIGEIIAE---PLRTYHPK-LSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIG-------IARALILEP 180 (331)
T ss_pred CCCCCHHHHHHH---HHHHhccC-CCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHH-------HHHHHhcCC
Confidence 111111000000 00000000 01112223334556666552 2678888 7999998 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
+++|+ .+|+.. ..++.+++..+.+ .+..+++|.|..
T Consensus 181 ~llilDEPts~LD~~~---~~~i~~lL~~l~~~~~~til~iTHdl 222 (331)
T PRK15079 181 KLIICDEPVSALDVSI---QAQVVNLLQQLQREMGLSLIFIAHDL 222 (331)
T ss_pred CEEEEeCCCccCCHHH---HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 99999 666653 5677788888865 478888888843
No 414
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.01 E-value=7.9e-10 Score=104.46 Aligned_cols=131 Identities=19% Similarity=0.323 Sum_probs=78.3
Q ss_pred cccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccc-------cCCceeEeecC
Q 009050 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS-------IPGNTVAVQAD 258 (545)
Q Consensus 188 ~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~-------~~g~t~~~~~~ 258 (545)
++++++|+..+ +++|+|+||+|||||++.|+|...| .++. +...+.+... .....+..+..
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~-------i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP---ASGE-------ITLDGKPVTRRSPRDAIRAGIAYVPEDR 84 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCce-------EEECCEECCccCHHHHHhCCeEEecCCc
Confidence 57777777766 9999999999999999999998742 2221 1111110000 00111111110
Q ss_pred ---CCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeC
Q 009050 259 ---MPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFD 329 (545)
Q Consensus 259 ---~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD 329 (545)
..+....... .+.+ +..+| |++|++. ++++++.+|+++|+ .+|
T Consensus 85 ~~~~~~~~~t~~e------------------~l~~---~~~LS~G~~qrl~-------la~al~~~p~llllDEP~~~LD 136 (182)
T cd03215 85 KREGLVLDLSVAE------------------NIAL---SSLLSGGNQQKVV-------LARWLARDPRVLILDEPTRGVD 136 (182)
T ss_pred ccCcccCCCcHHH------------------HHHH---HhhcCHHHHHHHH-------HHHHHccCCCEEEECCCCcCCC
Confidence 0011111100 0000 00166 8999988 89999999999998 666
Q ss_pred CCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 330 PHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 330 ~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+.. ...+.+++..+...+..++++.|.
T Consensus 137 ~~~---~~~l~~~l~~~~~~~~tiii~sh~ 163 (182)
T cd03215 137 VGA---KAEIYRLIRELADAGKAVLLISSE 163 (182)
T ss_pred HHH---HHHHHHHHHHHHHCCCEEEEEeCC
Confidence 653 566777888776667788888774
No 415
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.00 E-value=4.7e-10 Score=112.06 Aligned_cols=171 Identities=21% Similarity=0.339 Sum_probs=118.6
Q ss_pred ccCceeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccC-C-CCCCCCCCcccceEEEEeCCC---
Q 009050 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSY-P-GAHIGPEPTTDRFVVVMSGVD--- 244 (545)
Q Consensus 172 l~~l~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~-p-~~~v~~~p~t~r~~i~~~~~~--- 244 (545)
++.|.+.|.-..-..+++++++|+.+. +++|||.+||||||+.++++|... + +.++++ .+.+.+.+
T Consensus 4 v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G-------~i~f~g~~l~~ 76 (316)
T COG0444 4 VKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG-------EILFDGKDLLS 76 (316)
T ss_pred EeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeee-------EEEECCccccc
Confidence 456666654433234689999999887 999999999999999999999774 2 222332 33333331
Q ss_pred -----ccccCCcee--Eeec-CCCCCCcccccccchh----------hhhhhcCchhhccCceeec-------CCCCCC-
Q 009050 245 -----DRSIPGNTV--AVQA-DMPFSGLTTFGTAFLS----------KFECSQMPHSLLEHITLVD-------TPGVLS- 298 (545)
Q Consensus 245 -----~~~~~g~t~--~~~~-~~~~~gl~~~~~~~~~----------~~~~~~~~~~lL~~v~liD-------TPG~~s- 298 (545)
...+.|..+ .++. ...++.+.+.|..+.. +.+....+.++|+.|.|-| .|-.+|
T Consensus 77 l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSG 156 (316)
T COG0444 77 LSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSG 156 (316)
T ss_pred CCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCC
Confidence 113556554 3333 3456666666665321 1123345667888888775 788888
Q ss_pred hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 299 GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 299 gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
|++||+. +|.+++.+|+++|. .+|.+. ..+..++++.+++ .+..+++|.|.
T Consensus 157 GMrQRV~-------IAmala~~P~LlIADEPTTALDvt~---QaqIl~Ll~~l~~e~~~aiilITHD 213 (316)
T COG0444 157 GMRQRVM-------IAMALALNPKLLIADEPTTALDVTV---QAQILDLLKELQREKGTALILITHD 213 (316)
T ss_pred cHHHHHH-------HHHHHhCCCCEEEeCCCcchhhHHH---HHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7999998 88999999999998 566653 5778888988876 67888998883
No 416
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=7.6e-10 Score=110.48 Aligned_cols=166 Identities=20% Similarity=0.276 Sum_probs=94.9
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCC------CCcc------cceEEE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGP------EPTT------DRFVVV 239 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~------~p~t------~r~~i~ 239 (545)
..+.|++ ..++++++|...+ +++|+|+||+|||||++.|+|...| |.+ +.+ .+.. .+..+.
T Consensus 16 ~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~ 93 (257)
T PRK14246 16 LYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVG 93 (257)
T ss_pred EEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceE
Confidence 3335665 3489999999776 9999999999999999999998753 111 111 0000 122233
Q ss_pred EeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCcee-------ec-CCCCCC-hhhhhhhhccCh
Q 009050 240 MSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRAYDF 310 (545)
Q Consensus 240 ~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq~v~~~~~~ 310 (545)
+.++.....++.++..+..+.... . .+...........++++.+.+ .| .++.+| |++|++.
T Consensus 94 ~~~q~~~~~~~~tv~~nl~~~~~~---~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~----- 163 (257)
T PRK14246 94 MVFQQPNPFPHLSIYDNIAYPLKS---H--GIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLT----- 163 (257)
T ss_pred EEccCCccCCCCcHHHHHHHHHHh---c--CCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHH-----
Confidence 444433333333321000000000 0 000000111122333333333 22 456667 8999988
Q ss_pred HHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 311 ~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
++++++.+|+++|+ .+|... ...+.+++..+.+ +..++++.|..
T Consensus 164 --laral~~~P~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tiilvsh~~ 212 (257)
T PRK14246 164 --IARALALKPKVLLMDEPTSMIDIVN---SQAIEKLITELKN-EIAIVIVSHNP 212 (257)
T ss_pred --HHHHHHcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhc-CcEEEEEECCH
Confidence 89999999999998 566543 4567777777754 57888888853
No 417
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.00 E-value=1.1e-09 Score=103.34 Aligned_cols=141 Identities=23% Similarity=0.353 Sum_probs=85.4
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEe
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAV 255 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~ 255 (545)
.+.|+. ..++++++|+..+ +++|+|++|+|||||++.|+|...| .++ .+...+. .+.
T Consensus 6 ~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G-------~v~~~g~--------~~~- 64 (180)
T cd03214 6 SVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP---SSG-------EILLDGK--------DLA- 64 (180)
T ss_pred EEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCc-------EEEECCE--------ECC-
Confidence 345655 3488999988776 9999999999999999999998742 111 1111111 000
Q ss_pred ecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE----
Q 009050 256 QADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL---- 326 (545)
Q Consensus 256 ~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl---- 326 (545)
....... ...-.++.. +++.+.+. + .+..+| |++|++. ++++++.+|+++|+
T Consensus 65 --~~~~~~~-~~~i~~~~q---------~l~~~gl~~~~~~~~~~LS~G~~qrl~-------laral~~~p~llllDEP~ 125 (180)
T cd03214 65 --SLSPKEL-ARKIAYVPQ---------ALELLGLAHLADRPFNELSGGERQRVL-------LARALAQEPPILLLDEPT 125 (180)
T ss_pred --cCCHHHH-HHHHhHHHH---------HHHHcCCHhHhcCCcccCCHHHHHHHH-------HHHHHhcCCCEEEEeCCc
Confidence 0000000 000000000 22233222 2 355667 8999988 89999999999998
Q ss_pred -EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCCC
Q 009050 327 -LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKAD 361 (545)
Q Consensus 327 -vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~D 361 (545)
.+|+.. ...+.+++..+++. +..++++.|..+
T Consensus 126 ~~LD~~~---~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 126 SHLDIAH---QIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred cCCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 566543 45667778777655 678888887533
No 418
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=4.9e-10 Score=113.29 Aligned_cols=156 Identities=21% Similarity=0.289 Sum_probs=89.2
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc----------ccceEEEEeCCCc--cccC
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT----------TDRFVVVMSGVDD--RSIP 249 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~----------t~r~~i~~~~~~~--~~~~ 249 (545)
+++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+. ..+..+.+.++.. ...+
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE 100 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence 488999998876 9999999999999999999998753 111 001000 0011233333322 1111
Q ss_pred CceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCE
Q 009050 250 GNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (545)
Q Consensus 250 g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDl 323 (545)
+ ++..+ +.+ +....+ ...........++++.+.+. + .++.+| |++|++. ++++++.+|++
T Consensus 101 ~-tv~e~--l~~-~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~-------la~al~~~p~l 166 (280)
T PRK13649 101 E-TVLKD--VAF-GPQNFG---VSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVA-------IAGILAMEPKI 166 (280)
T ss_pred c-cHHHH--HHH-HHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH-------HHHHHHcCCCE
Confidence 1 11000 000 000000 00001111223444444442 3 356677 8999988 89999999999
Q ss_pred EEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 324 ILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 324 iLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+|+ .+|+.. ...+.+++..+++.+..++++.|.
T Consensus 167 llLDEPt~~LD~~~---~~~l~~~l~~~~~~~~tiiivsH~ 204 (280)
T PRK13649 167 LVLDEPTAGLDPKG---RKELMTLFKKLHQSGMTIVLVTHL 204 (280)
T ss_pred EEEeCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEecc
Confidence 998 566643 456677777776667788888884
No 419
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.00 E-value=3.5e-10 Score=111.00 Aligned_cols=153 Identities=18% Similarity=0.258 Sum_probs=84.0
Q ss_pred cccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc-------ceEEEEeCCCccccCCceeEeecCCC
Q 009050 190 TNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-------RFVVVMSGVDDRSIPGNTVAVQADMP 260 (545)
Q Consensus 190 ~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-------r~~i~~~~~~~~~~~g~t~~~~~~~~ 260 (545)
++++|+..+ +++|+|+||||||||++.|+|...| .++...-. .....+.++.....+..++..+....
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP---TSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHH
Confidence 344555444 9999999999999999999998753 11111000 00012222222222221210000000
Q ss_pred CCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCC
Q 009050 261 FSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDP 330 (545)
Q Consensus 261 ~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~ 330 (545)
+... ... ...........++++.+.+-+ .++.+| |++|++. ++++++.+|+++|+ .+|+
T Consensus 79 ~~~~--~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~al~~~p~lllLDEPt~gLD~ 147 (230)
T TIGR01184 79 VDRV--LPD--LSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVA-------IARALSIRPKVLLLDEPFGALDA 147 (230)
T ss_pred HHhc--ccC--CCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEcCCCcCCCH
Confidence 0000 000 000011122344555555533 456777 8999988 89999999999998 5666
Q ss_pred CCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 331 HKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 331 ~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
.. ...+.+++..+.+ .+..++++.|.
T Consensus 148 ~~---~~~l~~~l~~~~~~~~~tii~~sH~ 174 (230)
T TIGR01184 148 LT---RGNLQEELMQIWEEHRVTVLMVTHD 174 (230)
T ss_pred HH---HHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 43 4566777777654 36788888884
No 420
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=1.3e-09 Score=107.06 Aligned_cols=157 Identities=22% Similarity=0.267 Sum_probs=93.1
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc----cceEEEEeCCCcccc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT----DRFVVVMSGVDDRSI 248 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t----~r~~i~~~~~~~~~~ 248 (545)
++.|+.. .++++++|+..+ +++|+|++|+|||||++.|+|...| |.+ +...+.+ .+..+.+.+++....
T Consensus 7 ~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 84 (232)
T cd03300 7 SKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALF 84 (232)
T ss_pred EEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccC
Confidence 3456553 489999988877 9999999999999999999998753 110 0000000 111223333322222
Q ss_pred CCceeEeecCCCCCCcccccccc-hh------hhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHH
Q 009050 249 PGNTVAVQADMPFSGLTTFGTAF-LS------KFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSW 316 (545)
Q Consensus 249 ~g~t~~~~~~~~~~gl~~~~~~~-~~------~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~ 316 (545)
++.++ ..+.. .. ..........+++.+.+- + .|.-+| |++|++. ++++
T Consensus 85 ~~~t~-------------~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~-------lara 144 (232)
T cd03300 85 PHLTV-------------FENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVA-------IARA 144 (232)
T ss_pred CCCcH-------------HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHH
Confidence 22221 11110 00 001111223444444443 2 455566 8999988 8999
Q ss_pred HhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecC
Q 009050 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNK 359 (545)
Q Consensus 317 ~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK 359 (545)
++.+|+++|+ .+|+.. ...+.+++..+.+. +..++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~---~~~l~~~l~~~~~~~~~tiii~sh~ 190 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKL---RKDMQLELKRLQKELGITFVFVTHD 190 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 9999999998 566543 56677788877653 7788888873
No 421
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.00 E-value=7.5e-10 Score=105.80 Aligned_cols=160 Identities=14% Similarity=0.203 Sum_probs=90.0
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc--------ceEEEEeCCCccc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD--------RFVVVMSGVDDRS 247 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~--------r~~i~~~~~~~~~ 247 (545)
++.|+. ...+ +++|+..+ +++|+|+||||||||++.|+|...| .++..... ...+.+.++....
T Consensus 8 ~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~~~~ 81 (195)
T PRK13541 8 QFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP---SSGNIYYKNCNINNIAKPYCTYIGHNLGL 81 (195)
T ss_pred eEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCcccChhhhhhEEeccCCcCC
Confidence 345544 2244 48887766 9999999999999999999998743 11111000 0011111111111
Q ss_pred cCCceeEeecCCCCCCccccccc-chhhh-hhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTA-FLSKF-ECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~-~~~~~-~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
.+ ......+. +.... ........+++.+.+- + .++.+| |++|++. ++++++.+
T Consensus 82 ~~-------------~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~-------la~al~~~ 141 (195)
T PRK13541 82 KL-------------EMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVA-------IARLIACQ 141 (195)
T ss_pred Cc-------------cCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHH-------HHHHHhcC
Confidence 11 11111110 00000 0011122333343332 3 345566 7999888 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHH
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ 366 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~ 366 (545)
|+++|+ .+|+.. ...+.+++......+..++++.|..+.+...
T Consensus 142 p~~lllDEP~~~LD~~~---~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 142 SDLWLLDEVETNLSKEN---RDLLNNLIVMKANSGGIVLLSSHLESSIKSA 189 (195)
T ss_pred CCEEEEeCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEeCCccccchh
Confidence 999998 566543 4566677765555678899999988876543
No 422
>PTZ00258 GTP-binding protein; Provisional
Probab=99.00 E-value=1.6e-09 Score=113.03 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=63.7
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+|+|.||||||||+|+|++.. ..+++.|.||+...... ... .+..+..+ .
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~---~~v~n~pftTi~p~~g~----------v~~--~d~r~~~l-----------~ 74 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQ---VPAENFPFCTIDPNTAR----------VNV--PDERFDWL-----------C 74 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCc---ccccCCCCCcccceEEE----------Eec--ccchhhHH-----------H
Confidence 3479999999999999999999988 78899898886543211 000 00000000 0
Q ss_pred hhcCchh-hccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCC
Q 009050 277 CSQMPHS-LLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPH 331 (545)
Q Consensus 277 ~~~~~~~-lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~ 331 (545)
....+.. .-.++.|+||||+..+..+....+. -....++++|++++|+|+.
T Consensus 75 ~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~----~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 75 KHFKPKSIVPAQLDITDIAGLVKGASEGEGLGN----AFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHcCCcccCCCCeEEEECCCcCcCCcchhHHHH----HHHHHHHHCCEEEEEEeCC
Confidence 0000000 1137899999999864322111111 1234478999999999984
No 423
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.00 E-value=8.7e-10 Score=107.86 Aligned_cols=162 Identities=16% Similarity=0.193 Sum_probs=92.0
Q ss_pred cCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc---------ccceEEEEeCCCccccCCceeE
Q 009050 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT---------TDRFVVVMSGVDDRSIPGNTVA 254 (545)
Q Consensus 186 ~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~---------t~r~~i~~~~~~~~~~~g~t~~ 254 (545)
..++++++|+..+ +++|+|+||||||||++.|+|...++.+.+.... ..+..+.+.++.....++.|+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 4588999988877 9999999999999999999998740001111100 0122233344433333332221
Q ss_pred eecCCCCCCcccccccchhhhhhhcCchh-hccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE--
Q 009050 255 VQADMPFSGLTTFGTAFLSKFECSQMPHS-LLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-- 326 (545)
Q Consensus 255 ~~~~~~~~gl~~~~~~~~~~~~~~~~~~~-lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-- 326 (545)
.+..+.. ...+............... .++.+.+. + .++.+| |++|++. ++++++.+|+++|+
T Consensus 100 enl~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral~~~p~illlDE 169 (226)
T cd03234 100 ETLTYTA---ILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVS-------IAVQLLWDPKVLILDE 169 (226)
T ss_pred HHHHHHH---HhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHH-------HHHHHHhCCCEEEEeC
Confidence 1000000 0000000000000011122 44444443 2 345677 8999988 89999999999998
Q ss_pred ---EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 327 ---LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 327 ---vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
.+|+.. ...+.+++..+.+.+..++++.+..
T Consensus 170 P~~gLD~~~---~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 170 PTSGLDSFT---ALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred CCcCCCHHH---HHHHHHHHHHHHHCCCEEEEEecCC
Confidence 566643 5667778887766677888888864
No 424
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.00 E-value=2.2e-09 Score=106.91 Aligned_cols=157 Identities=23% Similarity=0.336 Sum_probs=91.2
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccC--CCCCCCCCCcc--------------cceEE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSY--PGAHIGPEPTT--------------DRFVV 238 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~--p~~~v~~~p~t--------------~r~~i 238 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|... |....++...- .+..+
T Consensus 12 l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 89 (253)
T PRK14242 12 LSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRV 89 (253)
T ss_pred eEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcE
Confidence 3446654 3488999988877 999999999999999999999742 10011111000 01122
Q ss_pred EEeCCCccccCCceeEeecCCCCCCcccccccchh--------hhhhhcCchhhccCcee-------ec-CCCCCC-hhh
Q 009050 239 VMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITL-------VD-TPGVLS-GEK 301 (545)
Q Consensus 239 ~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~--------~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gek 301 (545)
.+.+++....++ + ...+.... ..........+++.+.+ .| .++.+| |++
T Consensus 90 ~~v~q~~~~~~~-t-------------v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 90 GMVFQKPNPFPK-S-------------IFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQ 155 (253)
T ss_pred EEEecCCCCCcC-c-------------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 222332222221 1 11111000 00011122233444433 23 356677 899
Q ss_pred hhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 302 q~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
|++. ++++++.+|+++|+ .+|+.. ...+.+++..++. +..++++.|..
T Consensus 156 qrv~-------laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tvii~tH~~ 208 (253)
T PRK14242 156 QRLC-------IARALAVEPEVLLMDEPASALDPIA---TQKIEELIHELKA-RYTIIIVTHNM 208 (253)
T ss_pred HHHH-------HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHhc-CCeEEEEEecH
Confidence 9988 89999999999998 666653 5667778887754 57788888843
No 425
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.00 E-value=1e-09 Score=102.50 Aligned_cols=114 Identities=19% Similarity=0.332 Sum_probs=62.4
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
.+.|+|+|++|||||+|+..|.....+...+|-+|. +. . .+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n-----~~-------------------~---~~~~~--------- 46 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENN-----IA-------------------Y---NVNNS--------- 46 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEE-----EE-------------------C---CGSST---------
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCC-----ce-------------------E---EeecC---------
Confidence 457999999999999999999976542111111110 00 0 00000
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHH--HhcCCCEEEEEeCCCCCCccHHHH-------HHHHHHh
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSW--FAAKCDLILLLFDPHKLDISDEFK-------RVITSLR 347 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~--~~~~aDliLlvlD~~~~~~~~~~~-------~~l~~L~ 347 (545)
.-..+.+||+||... -|.. +... ...++..||+|+|+.. ...+.. +++....
T Consensus 47 -------~~~~~~lvD~PGH~r---lr~~-------~~~~~~~~~~~k~IIfvvDSs~--~~~~~~~~Ae~Ly~iL~~~~ 107 (181)
T PF09439_consen 47 -------KGKKLRLVDIPGHPR---LRSK-------LLDELKYLSNAKGIIFVVDSST--DQKELRDVAEYLYDILSDTE 107 (181)
T ss_dssp -------CGTCECEEEETT-HC---CCHH-------HHHHHHHHGGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCEEEEEECCCcHH---HHHH-------HHHhhhchhhCCEEEEEEeCcc--chhhHHHHHHHHHHHHHhhh
Confidence 003789999999832 1111 1122 4788999999999974 222222 2332222
Q ss_pred --cCCCeEEEEecCCCCCCH
Q 009050 348 --GHDDKIRVVLNKADQVDT 365 (545)
Q Consensus 348 --~~~~~iiiVlNK~D~~~~ 365 (545)
..+.|++++.||.|+...
T Consensus 108 ~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 108 VQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp CCTT--EEEEEEE-TTSTT-
T ss_pred hccCCCCEEEEEeCcccccc
Confidence 457799999999999864
No 426
>PLN00023 GTP-binding protein; Provisional
Probab=98.99 E-value=3.3e-09 Score=107.41 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=50.8
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC---------------CC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH---------------DD 351 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~---------------~~ 351 (545)
.+.||||+|.-. |..+...+..++|++|+|+|.+.....+.+..|++.+... +.
T Consensus 84 ~LqIWDTAGqEr-----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~i 152 (334)
T PLN00023 84 FVELWDVSGHER-----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPV 152 (334)
T ss_pred EEEEEECCCChh-----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence 588999999732 2224556789999999999998754455666777776542 36
Q ss_pred eEEEEecCCCCCCH
Q 009050 352 KIRVVLNKADQVDT 365 (545)
Q Consensus 352 ~iiiVlNK~D~~~~ 365 (545)
++++|.||+|+...
T Consensus 153 pIILVGNK~DL~~~ 166 (334)
T PLN00023 153 PYIVIGNKADIAPK 166 (334)
T ss_pred cEEEEEECcccccc
Confidence 89999999999653
No 427
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.99 E-value=5.5e-10 Score=110.11 Aligned_cols=165 Identities=20% Similarity=0.258 Sum_probs=93.3
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc----ccceEEEEeCCCcccc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT----TDRFVVVMSGVDDRSI 248 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~----t~r~~i~~~~~~~~~~ 248 (545)
.+.|+. ..++++++|+..+ +++|+|++|||||||++.|+|...| |.+ +...+. ..+..+.+.++.....
T Consensus 7 ~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~ 84 (237)
T TIGR00968 7 SKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALF 84 (237)
T ss_pred EEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhc
Confidence 345654 3489999888877 9999999999999999999998643 110 000000 0112233333333323
Q ss_pred CCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCE
Q 009050 249 PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (545)
Q Consensus 249 ~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDl 323 (545)
++.++..+...... ..+ ...........++++.+.+. + .++.+| |++|++. ++++++.+|++
T Consensus 85 ~~~t~~enl~~~~~---~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~-------laral~~~p~l 151 (237)
T TIGR00968 85 KHLTVRDNIAFGLE---IRK---HPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVA-------LARALAVEPQV 151 (237)
T ss_pred cCCcHHHHHHhHHH---hcC---CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHH-------HHHHHhcCCCE
Confidence 32222100000000 000 00000111223444555442 3 346677 8999988 89999999999
Q ss_pred EEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 324 ILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 324 iLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
+|+ .+|+.. ...+.+++..+... +..++++.+..
T Consensus 152 lllDEP~~~LD~~~---~~~~~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 152 LLLDEPFGALDAKV---RKELRSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred EEEcCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 998 566543 45666777777654 67788887743
No 428
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=9.5e-10 Score=111.22 Aligned_cols=159 Identities=23% Similarity=0.336 Sum_probs=92.8
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCc-------ccceEEEEeCCCcc-ccCCcee
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPT-------TDRFVVVMSGVDDR-SIPGNTV 253 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~-------t~r~~i~~~~~~~~-~~~g~t~ 253 (545)
.++++++|+..+ +++|+|+||||||||++.|+|...| |.+. ...+. ..+..+.+.++++. ...+.++
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 103 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV 103 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccH
Confidence 489999998877 9999999999999999999999753 1110 00000 00122333333221 0111111
Q ss_pred EeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE--
Q 009050 254 AVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-- 326 (545)
Q Consensus 254 ~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-- 326 (545)
...+.+. ....+ ............+++.+.+- | .|+.+| |++|++. ++++++.+|+++|+
T Consensus 104 --~~~l~~~-~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~-------laral~~~p~llllDE 170 (280)
T PRK13633 104 --EEDVAFG-PENLG---IPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVA-------IAGILAMRPECIIFDE 170 (280)
T ss_pred --HHHHHhh-HhhcC---CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH-------HHHHHHcCCCEEEEeC
Confidence 0000000 00000 00111112234445555443 3 567788 8999988 89999999999998
Q ss_pred ---EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 327 ---LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 327 ---vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
.+|+.. ...+.+++..+.+ .+..++++.+..+
T Consensus 171 Pt~gLD~~~---~~~l~~~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 171 PTAMLDPSG---RREVVNTIKELNKKYGITIILITHYME 206 (280)
T ss_pred CcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 667653 5667788888765 4778888888544
No 429
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.99 E-value=5.4e-10 Score=111.66 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=61.8
Q ss_pred EEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhc
Q 009050 200 VMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQ 279 (545)
Q Consensus 200 V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~ 279 (545)
|+|+|.||||||||+|+|+|.. ..+++.|.||..... |.....+.. +..+ ....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~---~~~~n~pftTi~p~~----------g~v~v~d~r--~~~l-----------~~~~ 54 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG---AEAANYPFCTIEPNV----------GIVPVPDER--LDKL-----------AEIV 54 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC---Cccccccccchhcee----------eeEEeccch--hhhH-----------HHHh
Confidence 5899999999999999999998 678888888865432 111100000 0000 0000
Q ss_pred Cchh-hccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCC
Q 009050 280 MPHS-LLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK 332 (545)
Q Consensus 280 ~~~~-lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~ 332 (545)
.+.. .-.++.++||||+..|..+....+..| ...++++|++++|+|+..
T Consensus 55 ~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~f----L~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 55 KPKKIVPATIEFVDIAGLVKGASKGEGLGNKF----LSHIREVDAIAHVVRCFE 104 (274)
T ss_pred CCceeeeeEEEEEECCCcCCCCchhhHHHHHH----HHHHHhCCEEEEEEeCcC
Confidence 0000 113689999999987543322211112 234689999999999853
No 430
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.99 E-value=6.1e-10 Score=108.77 Aligned_cols=157 Identities=22% Similarity=0.338 Sum_probs=89.5
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-C--CC--Ccc-----c-----ceEEEEeCCCccc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-G--PE--PTT-----D-----RFVVVMSGVDDRS 247 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~--~~--p~t-----~-----r~~i~~~~~~~~~ 247 (545)
.++++++|+..+ +++|+|+||+|||||++.|+|...| |.+. . .. ..+ . +..+.+.+++...
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 478999988776 9999999999999999999998743 1110 0 00 000 0 1122333333222
Q ss_pred cCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
.+..++....... +...+ ............+++.+.+- | .++.+| |++|++. ++++++.+|
T Consensus 102 ~~~~tv~e~l~~~---~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~-------laral~~~p 168 (224)
T TIGR02324 102 IPRVSALEVVAEP---LLERG---VPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN-------IARGFIADY 168 (224)
T ss_pred CCCccHHHHHHHH---HHHcC---CCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH-------HHHHHhcCC
Confidence 2222110000000 00000 00001112223344444442 3 345667 8999988 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+++|+ .+|+.. ...+.+++..++..+..++++.|.
T Consensus 169 ~llllDEPt~~LD~~~---~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 169 PILLLDEPTASLDAAN---RQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred CEEEEcCCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEeCC
Confidence 99988 566543 456677787777667788888884
No 431
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=9e-10 Score=111.19 Aligned_cols=165 Identities=24% Similarity=0.326 Sum_probs=94.8
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc------------ccceEEEEeC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT------------TDRFVVVMSG 242 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~------------t~r~~i~~~~ 242 (545)
+++.|... ..++++++|+..+ +++|+|+||||||||++.|+|...| .++... ..+..+.+.+
T Consensus 9 l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 84 (277)
T PRK13652 9 LCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP---TSGSVLIRGEPITKENIREVRKFVGLVF 84 (277)
T ss_pred EEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCcCCHHHHHhheEEEe
Confidence 34456321 2489999998877 9999999999999999999998753 111100 0011223333
Q ss_pred CCcc-ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHH
Q 009050 243 VDDR-SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSW 316 (545)
Q Consensus 243 ~~~~-~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~ 316 (545)
+++. ...+.++. ..+.+ +....+ ............+++.+.+- + .|+.+| |++|++. ++++
T Consensus 85 q~~~~~~~~~tv~--~~l~~-~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~-------lara 151 (277)
T PRK13652 85 QNPDDQIFSPTVE--QDIAF-GPINLG---LDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVA-------IAGV 151 (277)
T ss_pred cCcccccccccHH--HHHHh-HHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHH-------HHHH
Confidence 3221 01111110 00000 000000 00001111233445555543 2 577778 8999988 8999
Q ss_pred HhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCCC
Q 009050 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKAD 361 (545)
Q Consensus 317 ~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~D 361 (545)
++.+|+++|+ .+|+.. ...+.+++..+... +..++++.|..+
T Consensus 152 L~~~p~llilDEPt~gLD~~~---~~~l~~~l~~l~~~~g~tvli~tH~~~ 199 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQG---VKELIDFLNDLPETYGMTVIFSTHQLD 199 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 9999999998 566543 56777888887664 778888888543
No 432
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.99 E-value=9.3e-10 Score=107.10 Aligned_cols=168 Identities=16% Similarity=0.238 Sum_probs=91.3
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCc------ccceEEEEeCCCcc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPT------TDRFVVVMSGVDDR 246 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~------t~r~~i~~~~~~~~ 246 (545)
.+.|+.....++++++|+..+ +++|+|++|||||||++.|+|...| |.+. ...+. ..+..+.+.+++..
T Consensus 9 ~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 88 (220)
T cd03245 9 SFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVT 88 (220)
T ss_pred EEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCc
Confidence 335543213488999988776 9999999999999999999998753 1110 01110 01123444455443
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccC------ceeecCCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEH------ITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~------v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
..+. ++..+...... . ................+.+.. ..+.+.++.+| |++||+. ++++++.
T Consensus 89 ~~~~-tv~e~l~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~-------la~al~~ 157 (220)
T cd03245 89 LFYG-TLRDNITLGAP-L--ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVA-------LARALLN 157 (220)
T ss_pred cccc-hHHHHhhcCCC-C--CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHH-------HHHHHhc
Confidence 3321 22111000000 0 000000000000000111111 11223446777 8999988 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
+|+++|+ .+|+.. ...+.+++..+.+. ..++++.|..
T Consensus 158 ~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~-~tii~~sH~~ 199 (220)
T cd03245 158 DPPILLLDEPTSAMDMNS---EERLKERLRQLLGD-KTLIIITHRP 199 (220)
T ss_pred CCCEEEEeCccccCCHHH---HHHHHHHHHHhcCC-CEEEEEeCCH
Confidence 9999998 566653 56677777777653 6777777743
No 433
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=3e-10 Score=129.40 Aligned_cols=84 Identities=36% Similarity=0.654 Sum_probs=79.9
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQV 89 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~g~~~ 89 (545)
.+++.++..|+++|+++|+..+|.|+|.+|+.||.+|||+..+|++||+++|..+.|+|++.+|++|++|++++|+|..+
T Consensus 4 ~~~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~ 83 (847)
T KOG0998|consen 4 GLSPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGREL 83 (847)
T ss_pred CCCCCccchHHHhhhccCcccCCcccHHHhhhhhhccccchhhhhccccccccccCCccccccccccchHhhhhhcccCc
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Cccc
Q 009050 90 THDL 93 (545)
Q Consensus 90 ~~~l 93 (545)
+..-
T Consensus 84 ~~~~ 87 (847)
T KOG0998|consen 84 SAKK 87 (847)
T ss_pred Cccc
Confidence 7664
No 434
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=7.2e-10 Score=112.65 Aligned_cols=159 Identities=23% Similarity=0.328 Sum_probs=94.1
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc----------ccceEEEEeCCCcc-ccCC
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT----------TDRFVVVMSGVDDR-SIPG 250 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~----------t~r~~i~~~~~~~~-~~~g 250 (545)
+++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +..++- ..+..+.+.++++. ....
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE 100 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence 489999999887 9999999999999999999998754 111 011110 01122334444321 1111
Q ss_pred ceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEE
Q 009050 251 NTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (545)
Q Consensus 251 ~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDli 324 (545)
.|+. ..+.+ +....+ ...........++++.+.+- | .|+.+| |++|++. +|++++.+|+++
T Consensus 101 ~tv~--eni~~-~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~-------lAraL~~~P~ll 167 (290)
T PRK13634 101 ETVE--KDICF-GPMNFG---VSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA-------IAGVLAMEPEVL 167 (290)
T ss_pred hhHH--HHHHH-HHHHcC---CCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHH-------HHHHHHcCCCEE
Confidence 1110 00000 000000 01111122344555555553 3 467778 8999988 899999999999
Q ss_pred EE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 325 LL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 325 Ll-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
|+ .+|+.. ...+.+++..+.. .+.+++++.+..+
T Consensus 168 llDEPt~~LD~~~---~~~l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 168 VLDEPTAGLDPKG---RKEMMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred EEECCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99 566643 5667778888765 4788898888533
No 435
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.98 E-value=1.7e-09 Score=105.13 Aligned_cols=168 Identities=18% Similarity=0.282 Sum_probs=90.2
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc----------cceEEEEeC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT----------DRFVVVMSG 242 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t----------~r~~i~~~~ 242 (545)
.+.|... ..++++++|+..+ +++|+|++|+|||||++.|+|...| |.+ +...+.. .+..+.+.+
T Consensus 7 ~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 85 (218)
T cd03290 7 YFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAA 85 (218)
T ss_pred EEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEc
Confidence 3455432 3588999988776 9999999999999999999998753 110 1111100 012234444
Q ss_pred CCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCc-----eeec-CCCCCC-hhhhhhhhccChHHHHH
Q 009050 243 VDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI-----TLVD-TPGVLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 243 ~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v-----~liD-TPG~~s-gekq~v~~~~~~~~ia~ 315 (545)
++....++ ++..+ ..+.. .................+.+... ..++ .++.+| |++|++. +++
T Consensus 86 q~~~~~~~-t~~~n--l~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~-------lar 153 (218)
T cd03290 86 QKPWLLNA-TVEEN--ITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRIC-------VAR 153 (218)
T ss_pred CCCccccc-cHHHH--HhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHH-------HHH
Confidence 44332222 11000 00000 00000000000000000001100 0112 456677 8999988 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHH--HHHHHhcCCCeEEEEecCCC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKR--VITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~--~l~~L~~~~~~iiiVlNK~D 361 (545)
+++.+|+++|+ .+|+.. .+++.+ +++.+++.+..++++.|..+
T Consensus 154 al~~~p~illlDEPt~~LD~~~---~~~l~~~~ll~~~~~~~~tii~~sH~~~ 203 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHL---SDHLMQEGILKFLQDDKRTLVLVTHKLQ 203 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHH---HHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence 99999999988 566543 344444 66667666788899988654
No 436
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.98 E-value=2.3e-09 Score=110.86 Aligned_cols=157 Identities=15% Similarity=0.193 Sum_probs=95.1
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccc--------c--CCceeE
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS--------I--PGNTVA 254 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~--------~--~g~t~~ 254 (545)
.++++++|+..+ +++|+|++|||||||+++|+|...+.. .| +...+.+.+.+... . .+..+.
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~----~~--~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v 94 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNW----RV--TADRMRFDDIDLLRLSPRERRKLVGHNVSMI 94 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCC----CC--cceEEEECCEECCcCCHHHHHHHhCCCEEEE
Confidence 489999998877 999999999999999999999874100 01 11122222211100 0 112222
Q ss_pred eecCC-CCCCcccccccch-------------hh-hhhhcCchhhccCceeec-------CCCCCC-hhhhhhhhccChH
Q 009050 255 VQADM-PFSGLTTFGTAFL-------------SK-FECSQMPHSLLEHITLVD-------TPGVLS-GEKQRTQRAYDFT 311 (545)
Q Consensus 255 ~~~~~-~~~gl~~~~~~~~-------------~~-~~~~~~~~~lL~~v~liD-------TPG~~s-gekq~v~~~~~~~ 311 (545)
.+... .+....+.+..+. .+ ........++|+.+.|-+ .|..+| |++||+.
T Consensus 95 ~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~------ 168 (330)
T PRK15093 95 FQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVM------ 168 (330)
T ss_pred ecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH------
Confidence 22211 1111111111100 00 011223456677777742 577788 8999998
Q ss_pred HHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 312 ~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
+|++++.+|+++|+ .+|+.. ..++.+++..+.+ .+..+++|.|.
T Consensus 169 -iArAL~~~P~llilDEPts~LD~~~---~~~i~~lL~~l~~~~g~tii~itHd 218 (330)
T PRK15093 169 -IAIALANQPRLLIADEPTNAMEPTT---QAQIFRLLTRLNQNNNTTILLISHD 218 (330)
T ss_pred -HHHHHHCCCCEEEEeCCCCcCCHHH---HHHHHHHHHHHHHhcCCEEEEEECC
Confidence 89999999999999 666643 5677888888876 47888988884
No 437
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.98 E-value=2.8e-09 Score=94.86 Aligned_cols=150 Identities=18% Similarity=0.240 Sum_probs=91.2
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+|||.+|+|||||+-..+...+ -... |+| |.+.+. ...+...|+.
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~f--d~~~--~~t----IGvDFk-----------------vk~m~vdg~~------ 59 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTF--DDLH--PTT----IGVDFK-----------------VKVMQVDGKR------ 59 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhccc--CccC--Cce----eeeeEE-----------------EEEEEEcCce------
Confidence 34899999999999999999987665 1111 111 110000 0011111110
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCe
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDK 352 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~ 352 (545)
..+.||||+|. |+ |..++..+.+.|.-+|+|.|.+..+....+..|++++. +.++-
T Consensus 60 ---------~KlaiWDTAGq---Er--------FRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~dii 119 (209)
T KOG0080|consen 60 ---------LKLAIWDTAGQ---ER--------FRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDII 119 (209)
T ss_pred ---------EEEEEEeccch---Hh--------hhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHh
Confidence 27889999998 33 33357788999999999999987554445556676663 23456
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.++|.||+|..+...+.+-.+.- +++.. ....+..||++.++++.
T Consensus 120 kmlVgNKiDkes~R~V~reEG~k---fAr~h---~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 120 KMLVGNKIDKESERVVDREEGLK---FARKH---RCLFIECSAKTRENVQC 164 (209)
T ss_pred HhhhcccccchhcccccHHHHHH---HHHhh---CcEEEEcchhhhccHHH
Confidence 68899999976433222222111 12221 12236789999988775
No 438
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=3e-09 Score=99.49 Aligned_cols=136 Identities=23% Similarity=0.402 Sum_probs=81.1
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCcccc------C
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSI------P 249 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~------~ 249 (545)
++.|+.....++++++|+..+ .++|+|++|+|||||++.|+|...| .++ .+.+.+...... .
T Consensus 7 ~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G-------~i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 7 SFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP---TSG-------EILIDGVDLRDLDLESLRK 76 (171)
T ss_pred EEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCC-------EEEECCEEhhhcCHHHHHh
Confidence 335554212478898888776 9999999999999999999998742 221 111111100000 0
Q ss_pred CceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE--
Q 009050 250 GNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-- 326 (545)
Q Consensus 250 g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-- 326 (545)
...+..+....+ ..++.|-. +| |++|++. ++++++.+|+++|+
T Consensus 77 ~i~~~~~~~~~~-------------------------~~t~~e~l--LS~G~~~rl~-------la~al~~~p~llllDE 122 (171)
T cd03228 77 NIAYVPQDPFLF-------------------------SGTIRENI--LSGGQRQRIA-------IARALLRDPPILILDE 122 (171)
T ss_pred hEEEEcCCchhc-------------------------cchHHHHh--hCHHHHHHHH-------HHHHHhcCCCEEEEEC
Confidence 001111100000 00111110 66 8999988 89999999999998
Q ss_pred ---EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 327 ---LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 327 ---vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
.+|+.. ...+.+++..+.+ +..++++.|..+
T Consensus 123 P~~gLD~~~---~~~l~~~l~~~~~-~~tii~~sh~~~ 156 (171)
T cd03228 123 ATSALDPET---EALILEALRALAK-GKTVIVIAHRLS 156 (171)
T ss_pred CCcCCCHHH---HHHHHHHHHHhcC-CCEEEEEecCHH
Confidence 566643 4667777777754 567777777443
No 439
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=4.4e-09 Score=98.26 Aligned_cols=151 Identities=19% Similarity=0.294 Sum_probs=97.6
Q ss_pred cccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCc-cccCCceeEeecCCCCCCcccccccch
Q 009050 194 FDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDD-RSIPGNTVAVQADMPFSGLTTFGTAFL 272 (545)
Q Consensus 194 ~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~-~~~~g~t~~~~~~~~~~gl~~~~~~~~ 272 (545)
++....|+++|.+|+|||-|+-+.+.-++ .+-+ +.++.+.+... ..+.|.+
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF--~~~S------ksTIGvef~t~t~~vd~k~-------------------- 62 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEF--SLES------KSTIGVEFATRTVNVDGKT-------------------- 62 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhccccc--Cccc------ccceeEEEEeeceeecCcE--------------------
Confidence 44445799999999999999999987776 2211 11222111100 0011111
Q ss_pred hhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC---
Q 009050 273 SKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH--- 349 (545)
Q Consensus 273 ~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~--- 349 (545)
-...||||+|+ |+ |..++.++.+.+-..|++.|.++....+.+.+||++|+.+
T Consensus 63 -------------vkaqIWDTAGQ---ER--------yrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ 118 (222)
T KOG0087|consen 63 -------------VKAQIWDTAGQ---ER--------YRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADS 118 (222)
T ss_pred -------------EEEeeecccch---hh--------hccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCC
Confidence 16789999998 33 2336777889999999999998755567788999999875
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHHhccccc-CCccEEEEeeccCCCccCc
Q 009050 350 DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLN-TPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 350 ~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~-~~~v~~v~iSa~~~~~~~~ 403 (545)
+..+++|.||+|+.....+..-. ++.+. ......+.+||+.+.+++.
T Consensus 119 nivimLvGNK~DL~~lraV~te~-------~k~~Ae~~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 119 NIVIMLVGNKSDLNHLRAVPTED-------GKAFAEKEGLFFLETSALDATNVEK 166 (222)
T ss_pred CeEEEEeecchhhhhccccchhh-------hHhHHHhcCceEEEecccccccHHH
Confidence 56899999999997632221111 11111 1223446799999988774
No 440
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=2.4e-09 Score=106.73 Aligned_cols=166 Identities=20% Similarity=0.291 Sum_probs=93.8
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCc--------c
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDD--------R 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~--------~ 246 (545)
+++.|++ ..++++++|+..+ +++|+|++|||||||+++|+|...| ....|. ...+.+.+... .
T Consensus 13 l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~~~--~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 13 LNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDL---VEGIKI--EGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred eEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccC---CcCCCC--ceEEEECCEecccccccHHH
Confidence 3445654 3588999998877 9999999999999999999998742 100011 11111111110 0
Q ss_pred ccCCceeEeecCCCCCCcccccccch-h-------hhhhhcCchhhccCcee-------ecC-CCCCC-hhhhhhhhccC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFL-S-------KFECSQMPHSLLEHITL-------VDT-PGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~-~-------~~~~~~~~~~lL~~v~l-------iDT-PG~~s-gekq~v~~~~~ 309 (545)
...+..+..+....+. .....+... . ...........++.+.+ .|+ ++.+| |++|++.
T Consensus 86 ~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~---- 160 (254)
T PRK14273 86 LRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC---- 160 (254)
T ss_pred HhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH----
Confidence 0112222222221121 111111100 0 00111122333444433 233 45677 7999988
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
++++++.+|+++|+ .+|+.. ...+.+++..++. +..++++.+..+
T Consensus 161 ---laral~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~-~~tvii~sH~~~ 210 (254)
T PRK14273 161 ---IARTLAIEPNVILMDEPTSALDPIS---TGKIEELIINLKE-SYTIIIVTHNMQ 210 (254)
T ss_pred ---HHHHHHcCCCEEEEeCCCcccCHHH---HHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 89999999999998 666653 5667788888864 577888877443
No 441
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.97 E-value=1.3e-09 Score=104.10 Aligned_cols=136 Identities=21% Similarity=0.271 Sum_probs=80.7
Q ss_pred cCcccccccccCc--eEEEEcCCCCChHHHHHHHHccc--CCCCCCCCCCcccceEEEEeCCCccc---cCCceeEeecC
Q 009050 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS--YPGAHIGPEPTTDRFVVVMSGVDDRS---IPGNTVAVQAD 258 (545)
Q Consensus 186 ~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~--~p~~~v~~~p~t~r~~i~~~~~~~~~---~~g~t~~~~~~ 258 (545)
.+++++++|...+ +++|+|++|+|||||++.|+|.. .| ..| .+.+.+..... .....+..+..
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G--------~i~~~g~~~~~~~~~~~i~~~~q~~ 91 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSG--------EVLINGRPLDKRSFRKIIGYVPQDD 91 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--Cce--------EEEECCEeCchHhhhheEEEccCcc
Confidence 3589999998877 99999999999999999999986 42 111 11111111000 00111111111
Q ss_pred CCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCC
Q 009050 259 MPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHK 332 (545)
Q Consensus 259 ~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~ 332 (545)
..+.++....+..+ . ..+ ..+| |++|++. ++++++.+|+++|+ .+|+..
T Consensus 92 ~~~~~~t~~~~i~~--------~----~~~------~~LS~G~~qrv~-------laral~~~p~illlDEP~~~LD~~~ 146 (194)
T cd03213 92 ILHPTLTVRETLMF--------A----AKL------RGLSGGERKRVS-------IALELVSNPSLLFLDEPTSGLDSSS 146 (194)
T ss_pred cCCCCCcHHHHHHH--------H----HHh------ccCCHHHHHHHH-------HHHHHHcCCCEEEEeCCCcCCCHHH
Confidence 11111111111000 0 000 0456 8999988 89999999999988 555543
Q ss_pred CCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 333 LDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 333 ~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
...+.+++..+.+.+..++++.+.
T Consensus 147 ---~~~l~~~l~~~~~~~~tiii~sh~ 170 (194)
T cd03213 147 ---ALQVMSLLRRLADTGRTIICSIHQ 170 (194)
T ss_pred ---HHHHHHHHHHHHhCCCEEEEEecC
Confidence 466777888777667788888884
No 442
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2e-09 Score=94.43 Aligned_cols=159 Identities=19% Similarity=0.268 Sum_probs=98.1
Q ss_pred cccccccccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccc
Q 009050 188 LLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTF 267 (545)
Q Consensus 188 ~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~ 267 (545)
.-.+.+|+....+.|+|..++|||||+..-++..+.-+.++. +...+. -.|+ |+.-.
T Consensus 12 ~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsT--------vGidFK------vKTv-------yr~~k-- 68 (193)
T KOG0093|consen 12 DSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVST--------VGIDFK------VKTV-------YRSDK-- 68 (193)
T ss_pred ccccccccceeeEEEEccCCccchhhhHHhhccccccceeee--------eeeeEE------EeEe-------eeccc--
Confidence 334667888889999999999999999999988762111111 000000 0000 00000
Q ss_pred cccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh
Q 009050 268 GTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR 347 (545)
Q Consensus 268 ~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~ 347 (545)
+ -.+.++||+|. |+ |..++.++.+.++.+|+++|.++......+..++.+++
T Consensus 69 ------------R-----iklQiwDTagq---Er--------yrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIk 120 (193)
T KOG0093|consen 69 ------------R-----IKLQIWDTAGQ---ER--------YRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIK 120 (193)
T ss_pred ------------E-----EEEEEEecccc---hh--------hhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHhe
Confidence 0 16789999998 22 33477888999999999999998433344556666665
Q ss_pred c---CCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 348 G---HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 348 ~---~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
. .+.++|+|.||||+-+..-+..-.+. .+...+++ +. |.+||+.+-+++.
T Consensus 121 tysw~naqvilvgnKCDmd~eRvis~e~g~---~l~~~LGf-ef--FEtSaK~NinVk~ 173 (193)
T KOG0093|consen 121 TYSWDNAQVILVGNKCDMDSERVISHERGR---QLADQLGF-EF--FETSAKENINVKQ 173 (193)
T ss_pred eeeccCceEEEEecccCCccceeeeHHHHH---HHHHHhCh-HH--hhhcccccccHHH
Confidence 4 47899999999998753211100000 11222333 33 6788888877664
No 443
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.97 E-value=9.2e-10 Score=113.59 Aligned_cols=104 Identities=16% Similarity=0.124 Sum_probs=63.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.||||||||+|+|+|.. +.+++.|.||+..... .....+.... .+ ..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~---~~v~nypftTi~p~~G----------~~~v~d~r~~--~l-----------~~ 56 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG---AEAANYPFCTIEPNVG----------VVPVPDPRLD--KL-----------AE 56 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CeecccccccccceEE----------EEEeccccch--hh-----------HH
Confidence 469999999999999999999988 7888888888654321 1000000000 00 00
Q ss_pred hcCchhh-ccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCC
Q 009050 278 SQMPHSL-LEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPH 331 (545)
Q Consensus 278 ~~~~~~l-L~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~ 331 (545)
...|... -.++.|+||||+..+..+.-..+. -....++++|++++|+|+.
T Consensus 57 ~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~----~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 57 IVKPKKIVPATIEFVDIAGLVKGASKGEGLGN----QFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hcCCccccCceEEEEECCCCCCCCChHHHHHH----HHHHHHHhCCEEEEEEeCC
Confidence 0001111 136899999999874322211111 1233478999999999985
No 444
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.97 E-value=6.5e-10 Score=122.20 Aligned_cols=173 Identities=20% Similarity=0.236 Sum_probs=96.8
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHccc--CC--CCCC-C----------------CCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS--YP--GAHI-G----------------PEPTT 233 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~--~p--~~~v-~----------------~~p~t 233 (545)
+++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|.. .| |.+. . +++.+
T Consensus 6 l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~ 83 (520)
T TIGR03269 6 LTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCP 83 (520)
T ss_pred EEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccc
Confidence 3456765 3489999988776 99999999999999999999985 22 1110 0 00000
Q ss_pred -cceEEE-----EeC-CCc--cc-cCCceeEeec-CCCCCCcccccccch-------hhhhhhcCchhhccCceeec---
Q 009050 234 -DRFVVV-----MSG-VDD--RS-IPGNTVAVQA-DMPFSGLTTFGTAFL-------SKFECSQMPHSLLEHITLVD--- 292 (545)
Q Consensus 234 -~r~~i~-----~~~-~~~--~~-~~g~t~~~~~-~~~~~gl~~~~~~~~-------~~~~~~~~~~~lL~~v~liD--- 292 (545)
....+. ... ... .. .....+..+. ...+..+....+... ..........++++.+.+-+
T Consensus 84 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 163 (520)
T TIGR03269 84 VCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRIT 163 (520)
T ss_pred cccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh
Confidence 000000 000 000 00 0011112221 111111111111100 01111223445666666643
Q ss_pred -CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 293 -TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 293 -TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
.|+.+| |++||+. +|++++.+|+++|+ .+|+.. ...+.+++..+.. .+..+++|.|..+
T Consensus 164 ~~~~~LSgGq~qrv~-------iA~al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 164 HIARDLSGGEKQRVV-------LARQLAKEPFLFLADEPTGTLDPQT---AKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred cCcccCCHHHHHHHH-------HHHHHhcCCCEEEeeCCcccCCHHH---HHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 578888 8999998 89999999999998 677654 5667777887744 4778888888654
No 445
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=1.5e-09 Score=108.02 Aligned_cols=157 Identities=20% Similarity=0.282 Sum_probs=91.7
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCC--CCCCCCcc--------------cceEE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGA--HIGPEPTT--------------DRFVV 238 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~--~v~~~p~t--------------~r~~i 238 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...|.. ..++...- .+..+
T Consensus 10 l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 87 (253)
T PRK14267 10 LRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREV 87 (253)
T ss_pred EEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhce
Confidence 4446655 3489999999877 999999999999999999999864210 01111100 01122
Q ss_pred EEeCCCccccCCceeEeecCCCCCCcccccccchh---------hhhhhcCchhhccCcee-------ec-CCCCCC-hh
Q 009050 239 VMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLS---------KFECSQMPHSLLEHITL-------VD-TPGVLS-GE 300 (545)
Q Consensus 239 ~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~---------~~~~~~~~~~lL~~v~l-------iD-TPG~~s-ge 300 (545)
.+.+++....++.|+ ..+.... ..........+++.+.+ .| .++.+| |+
T Consensus 88 ~~~~q~~~~~~~~tv-------------~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 88 GMVFQYPNPFPHLTI-------------YDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQ 154 (253)
T ss_pred eEEecCCccCCCCcH-------------HHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHH
Confidence 333333222222222 1111000 00001112233444332 23 456677 89
Q ss_pred hhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 301 KQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 301 kq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+|++. ++++++.+|+++|+ .+|+.. ...+.+++..+.. +..++++.|.
T Consensus 155 ~qrv~-------laral~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiii~sH~ 207 (253)
T PRK14267 155 RQRLV-------IARALAMKPKILLMDEPTANIDPVG---TAKIEELLFELKK-EYTIVLVTHS 207 (253)
T ss_pred HHHHH-------HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhh-CCEEEEEECC
Confidence 99988 89999999999998 566643 4667777777754 5677877773
No 446
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.97 E-value=1.7e-09 Score=104.30 Aligned_cols=156 Identities=20% Similarity=0.254 Sum_probs=90.1
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc------ccceEEEEeCCCcc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT------TDRFVVVMSGVDDR 246 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~------t~r~~i~~~~~~~~ 246 (545)
.+.|+.....++++++|+..+ +++|+|++|+|||||++.|+|...| |.+ ....+. ..+..+.+.+++..
T Consensus 13 ~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 92 (207)
T cd03369 13 SVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPT 92 (207)
T ss_pred EEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCc
Confidence 335553223588999988776 9999999999999999999998753 111 000000 01223444444443
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEE
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliL 325 (545)
..++ ++..+... +.. . .. ......++ +-..+..+| |++|++. ++++++.+|+++|
T Consensus 93 ~~~~-tv~~~l~~-~~~---~-----~~----~~~~~~l~---~~~~~~~LS~G~~qrv~-------laral~~~p~lll 148 (207)
T cd03369 93 LFSG-TIRSNLDP-FDE---Y-----SD----EEIYGALR---VSEGGLNLSQGQRQLLC-------LARALLKRPRVLV 148 (207)
T ss_pred ccCc-cHHHHhcc-cCC---C-----CH----HHHHHHhh---ccCCCCcCCHHHHHHHH-------HHHHHhhCCCEEE
Confidence 3332 22100000 000 0 00 00111222 223456677 7999988 8999999999999
Q ss_pred E-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 326 L-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 326 l-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+ .+|+.. ...+.+++..+.+ +..++++.|..+
T Consensus 149 lDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiii~th~~~ 185 (207)
T cd03369 149 LDEATASIDYAT---DALIQKTIREEFT-NSTILTIAHRLR 185 (207)
T ss_pred EeCCcccCCHHH---HHHHHHHHHHhcC-CCEEEEEeCCHH
Confidence 8 555543 4556677776643 677888888544
No 447
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=1.3e-09 Score=107.82 Aligned_cols=160 Identities=21% Similarity=0.270 Sum_probs=93.0
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCC------CcccceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPE------PTTDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~------p~t~r~~i~~~~~~~ 245 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+. ... +...+..+.+.+++.
T Consensus 9 l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 86 (241)
T PRK14250 9 VSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQP 86 (241)
T ss_pred EEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCc
Confidence 3445654 3488999998876 9999999999999999999998753 1110 000 001122333444433
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
...++ ++..+ ..+... ..+ ........+++.+.+- + .|+.+| |++|++. ++++++.
T Consensus 87 ~~~~~-tv~e~--l~~~~~-~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~-------la~al~~ 148 (241)
T PRK14250 87 HLFEG-TVKDN--IEYGPM-LKG-------EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVS-------IARTLAN 148 (241)
T ss_pred hhchh-hHHHH--Hhcchh-hcC-------cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHH-------HHHHHhc
Confidence 22221 11000 000000 000 0011123344444442 2 456677 8999988 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
+|+++|+ .+|+.. ...+.+++..+.+ .+..++++.|.
T Consensus 149 ~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tii~~sH~ 191 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTS---TEIIEELIVKLKNKMNLTVIWITHN 191 (241)
T ss_pred CCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhCCCEEEEEecc
Confidence 9999998 566543 4566677777765 47788888883
No 448
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.97 E-value=1.3e-09 Score=109.31 Aligned_cols=156 Identities=26% Similarity=0.280 Sum_probs=89.2
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc---------------ceEEEEeCCCcc--c
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD---------------RFVVVMSGVDDR--S 247 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~---------------r~~i~~~~~~~~--~ 247 (545)
.++++++|+..+ +++|+|++|||||||++.|+|...| .++..... +..+.+.++... .
T Consensus 25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence 488999998877 9999999999999999999998753 22111100 112222332210 1
Q ss_pred cCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
.+..++....... ..... . ...........++++.+.+- | .++.+| |++|++. ++++++.+|
T Consensus 102 ~~~~tv~~~l~~~---~~~~~-~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~-------laral~~~p 169 (265)
T TIGR02769 102 NPRMTVRQIIGEP---LRHLT-S-LDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN-------IARALAVKP 169 (265)
T ss_pred CCCCCHHHHHHHH---HHHhc-C-CCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH-------HHHHHhcCC
Confidence 1111110000000 00000 0 00001112334455555542 3 345667 8999988 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCC
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKA 360 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~ 360 (545)
+++|+ .+|+.. ...+.+++..+.+. +..++++.|..
T Consensus 170 ~illLDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tiiivsH~~ 211 (265)
T TIGR02769 170 KLIVLDEAVSNLDMVL---QAVILELLRKLQQAFGTAYLFITHDL 211 (265)
T ss_pred CEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 99988 555542 45677788777654 77888888843
No 449
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.96 E-value=1e-08 Score=94.07 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=94.8
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
....|+++|+.++||||+++.++.... ..+... .+.... ...+.+|+..+ |..+...+.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~--v~t~~~-~~~~s~--------k~kr~tTva~D----~g~~~~~~~------ 67 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPL--VITEAD-ASSVSG--------KGKRPTTVAMD----FGSIELDED------ 67 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhcccc--ceeecc-cccccc--------ccccceeEeec----ccceEEcCc------
Confidence 345899999999999999999998774 222110 000000 00111222211 111111111
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCC-CeEE
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHD-DKIR 354 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~-~~ii 354 (545)
..+.|+||||.. |.. .+..-+.+.++.+++++|.+.. ......++++.+.... .|++
T Consensus 68 ----------~~v~LfgtPGq~-----RF~------fm~~~l~~ga~gaivlVDss~~-~~~~a~~ii~f~~~~~~ip~v 125 (187)
T COG2229 68 ----------TGVHLFGTPGQE-----RFK------FMWEILSRGAVGAIVLVDSSRP-ITFHAEEIIDFLTSRNPIPVV 125 (187)
T ss_pred ----------ceEEEecCCCcH-----HHH------HHHHHHhCCcceEEEEEecCCC-cchHHHHHHHHHhhccCCCEE
Confidence 278899999982 222 2445567899999999999873 3435567777776666 8999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+..||.|+.+......+.+.+-..+ ..++.|.++|..+++..+
T Consensus 126 Va~NK~DL~~a~ppe~i~e~l~~~~------~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 126 VAINKQDLFDALPPEKIREALKLEL------LSVPVIEIDATEGEGARD 168 (187)
T ss_pred EEeeccccCCCCCHHHHHHHHHhcc------CCCceeeeecccchhHHH
Confidence 9999999986433333333331111 234457888887776554
No 450
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.96 E-value=7.7e-10 Score=121.08 Aligned_cols=170 Identities=19% Similarity=0.246 Sum_probs=98.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc------c-------cceEEEEe
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT------T-------DRFVVVMS 241 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~------t-------~r~~i~~~ 241 (545)
+++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...|+ ..++... . .+..+.+.
T Consensus 7 l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 83 (500)
T TIGR02633 7 IVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVII 83 (500)
T ss_pred EEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3446665 3489999988877 99999999999999999999986420 0111100 0 01123333
Q ss_pred CCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee----cC-CCCCC-hhhhhhhhccChHHHHH
Q 009050 242 GVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----DT-PGVLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 242 ~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li----DT-PG~~s-gekq~v~~~~~~~~ia~ 315 (545)
++.....+..++..+..+... ....+. ............++++.+.+- +. ++.+| |++||+. +|+
T Consensus 84 ~q~~~~~~~~tv~~~l~~~~~-~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~-------iA~ 154 (500)
T TIGR02633 84 HQELTLVPELSVAENIFLGNE-ITLPGG-RMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVE-------IAK 154 (500)
T ss_pred eeccccCCCCcHHHHHHhhcc-cccccc-ccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHH-------HHH
Confidence 333332232222100000000 000000 000001112234455555542 33 67788 8999998 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|..+
T Consensus 155 al~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tviiitHd~~ 202 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKE---TEILLDIIRDLKAHGVACVYISHKLN 202 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 99999999988 566653 56777888888777778888888543
No 451
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.96 E-value=1.5e-09 Score=109.04 Aligned_cols=164 Identities=23% Similarity=0.311 Sum_probs=92.7
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCC--CCCCCCCc--------------ccceE
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPG--AHIGPEPT--------------TDRFV 237 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~--~~v~~~p~--------------t~r~~ 237 (545)
.+++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...|. .+.++... ..+..
T Consensus 24 nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (267)
T PRK14235 24 DVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRAR 101 (267)
T ss_pred eEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhc
Confidence 34556665 3489999999877 99999999999999999999976310 01111100 00112
Q ss_pred EEEeCCCccccCCceeEeecCCC--CCCcccccccchhhhhhhcCchhhccCcee-------ec-CCCCCC-hhhhhhhh
Q 009050 238 VVMSGVDDRSIPGNTVAVQADMP--FSGLTTFGTAFLSKFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQR 306 (545)
Q Consensus 238 i~~~~~~~~~~~g~t~~~~~~~~--~~gl~~~~~~~~~~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq~v~~ 306 (545)
+.+.++.....++ ++..+..+. +.+.. ..+.........+++.+.+ .| .++.+| |++||+.
T Consensus 102 i~~v~q~~~~~~~-tv~enl~~~~~~~~~~------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~- 173 (267)
T PRK14235 102 VGMVFQKPNPFPK-SIYENVAYGPRIHGLA------RSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLC- 173 (267)
T ss_pred eEEEecCCCCCCC-cHHHHHHHHHHhcccc------cchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH-
Confidence 2233332222221 110000000 00000 0000111122334444444 23 356677 8999998
Q ss_pred ccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 307 AYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 307 ~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.+ +..++++.+.
T Consensus 174 ------laral~~~p~lllLDEPt~~LD~~~---~~~l~~~L~~l~~-~~tiiivtH~ 221 (267)
T PRK14235 174 ------IARAIAVSPEVILMDEPCSALDPIA---TAKVEELIDELRQ-NYTIVIVTHS 221 (267)
T ss_pred ------HHHHHHcCCCEEEEeCCCcCCCHHH---HHHHHHHHHHHhc-CCeEEEEEcC
Confidence 89999999999999 566653 4667778887765 5677777773
No 452
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.96 E-value=1.5e-09 Score=105.76 Aligned_cols=166 Identities=20% Similarity=0.320 Sum_probs=90.1
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCc------ccceEEEEeCCCcc
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPT------TDRFVVVMSGVDDR 246 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~------t~r~~i~~~~~~~~ 246 (545)
++.|......++++++|+..+ +++|+|++|||||||++.|+|...| |.+. ...+. ..+..+.+.++...
T Consensus 9 ~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 88 (221)
T cd03244 9 SLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPV 88 (221)
T ss_pred EEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCc
Confidence 345543223589999998887 9999999999999999999998753 1110 00000 01223444555443
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhcc----Cce--eecCCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLE----HIT--LVDTPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~----~v~--liDTPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
..++ ++..+.. .+... .... .......... .+.+. .+. +-..+..+| |++|++. ++++++.
T Consensus 89 l~~~-tv~enl~-~~~~~-~~~~-~~~~~~~~~l-~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~-------laral~~ 156 (221)
T cd03244 89 LFSG-TIRSNLD-PFGEY-SDEE-LWQALERVGL-KEFVESLPGGLDTVVEEGGENLSVGQRQLLC-------LARALLR 156 (221)
T ss_pred cccc-hHHHHhC-cCCCC-CHHH-HHHHHHHhCc-HHHHHhcccccccccccCCCcCCHHHHHHHH-------HHHHHhc
Confidence 3332 2210000 00000 0000 0000000000 01111 111 112455667 7999988 8999999
Q ss_pred CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 320 KCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 320 ~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+|+++|+ .+|+.. ...+.+++..+.. +..++++.+.
T Consensus 157 ~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tii~~sh~ 197 (221)
T cd03244 157 KSKILVLDEATASVDPET---DALIQKTIREAFK-DCTVLTIAHR 197 (221)
T ss_pred CCCEEEEeCccccCCHHH---HHHHHHHHHHhcC-CCEEEEEeCC
Confidence 9999998 566643 4566777777754 4677777774
No 453
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=1.2e-09 Score=112.75 Aligned_cols=148 Identities=17% Similarity=0.235 Sum_probs=93.3
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc---------------ceEEEEeCCCccccC
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD---------------RFVVVMSGVDDRSIP 249 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~---------------r~~i~~~~~~~~~~~ 249 (545)
.++++++|+..+ +++|+|++|||||||+++|+|...| .++..... +..+.+.+++..
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p---~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~--- 102 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP---TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPY--- 102 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCch---
Confidence 489999999877 9999999999999999999998743 11111000 112333333220
Q ss_pred CceeEeecCCCCCCcccccccc---------hhhhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhccChHHHH
Q 009050 250 GNTVAVQADMPFSGLTTFGTAF---------LSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVT 314 (545)
Q Consensus 250 g~t~~~~~~~~~~gl~~~~~~~---------~~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia 314 (545)
..+....+.+..+ ..+.+......++++.+.+- | .|+.+| |++||+. +|
T Consensus 103 ---------~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~-------iA 166 (327)
T PRK11308 103 ---------GSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIA-------IA 166 (327)
T ss_pred ---------hhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHH-------HH
Confidence 0111111111111 01112223345566666553 2 678888 7999998 89
Q ss_pred HHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 315 ~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
++++.+|+++|+ .+|... ..++.+++..+++ .+..+++|.|.
T Consensus 167 rAL~~~P~lLilDEPts~LD~~~---~~~i~~lL~~l~~~~g~til~iTHd 214 (327)
T PRK11308 167 RALMLDPDVVVADEPVSALDVSV---QAQVLNLMMDLQQELGLSYVFISHD 214 (327)
T ss_pred HHHHcCCCEEEEECCCccCCHHH---HHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999999999998 566643 5677788888765 47788888884
No 454
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.96 E-value=1.3e-09 Score=104.65 Aligned_cols=171 Identities=20% Similarity=0.248 Sum_probs=99.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCC--------CCCCCCCc--ccceEEEEeCCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPG--------AHIGPEPT--TDRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~--------~~v~~~p~--t~r~~i~~~~~~ 244 (545)
+...|++ ++++.+++..+.+ ..+|+|+||||||||++.++|...|. ...+...+ .-|..+.+.+..
T Consensus 37 v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~ 114 (257)
T COG1119 37 VSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSE 114 (257)
T ss_pred eEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHH
Confidence 4446777 4599999999887 99999999999999999999999761 11111111 112333332221
Q ss_pred cc-ccC-Ccee---EeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHH
Q 009050 245 DR-SIP-GNTV---AVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVT 314 (545)
Q Consensus 245 ~~-~~~-g~t~---~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia 314 (545)
-. ..+ ..++ +....+.-.|+... -...+....+..+|+.+.+. | +-+.+| ||++++- +|
T Consensus 115 L~~~~~~~~~v~dvVlSg~~~siG~y~~----~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvL-------ia 183 (257)
T COG1119 115 LHERFRVRETVRDVVLSGFFASIGIYQE----DLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVL-------IA 183 (257)
T ss_pred HHhhcccccccceeeeeccccccccccc----CCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHH-------HH
Confidence 11 111 1111 11111111111110 01112233445556666554 4 336667 8998887 89
Q ss_pred HHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC--CCeEEEEecCCCCC
Q 009050 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH--DDKIRVVLNKADQV 363 (545)
Q Consensus 315 ~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~--~~~iiiVlNK~D~~ 363 (545)
|+++.+|.++|+ .+|... .+.+.+.+..+... +..+++|.+..+.+
T Consensus 184 RALv~~P~LLiLDEP~~GLDl~~---re~ll~~l~~~~~~~~~~~ll~VtHh~eEi 236 (257)
T COG1119 184 RALVKDPELLILDEPAQGLDLIA---REQLLNRLEELAASPGAPALLFVTHHAEEI 236 (257)
T ss_pred HHHhcCCCEEEecCccccCChHH---HHHHHHHHHHHhcCCCCceEEEEEcchhhc
Confidence 999999999998 555543 45666777776554 56788888865543
No 455
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=1.5e-09 Score=109.53 Aligned_cols=165 Identities=21% Similarity=0.276 Sum_probs=90.4
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCcc-------
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR------- 246 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~------- 246 (545)
.+++.|+. ..++++++|+..+ +++|+|++|+|||||++.|+|...| .++.|.. ..+...+....
T Consensus 26 nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p---~~~~~~~--G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 26 NLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK---VSGYRYS--GDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred eEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc---CCCCCCc--eEEEECCEEccccchhHH
Confidence 34456765 3489999999877 9999999999999999999998632 1111111 11111111000
Q ss_pred ccCCceeEeecCCCCCCccccccc-ch-------hhhhhhcCchhhccCceee-------c-CCCCCC-hhhhhhhhccC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTA-FL-------SKFECSQMPHSLLEHITLV-------D-TPGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~-~~-------~~~~~~~~~~~lL~~v~li-------D-TPG~~s-gekq~v~~~~~ 309 (545)
...+..+..+....+. .....+. +. ...........+++.+.+. + .++.+| |++|++.
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~---- 173 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC---- 173 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH----
Confidence 0011112222111111 1111110 00 0000111112333333332 2 356677 8999988
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.+ +..++++.|.
T Consensus 174 ---LAral~~~p~lllLDEPt~~LD~~~---~~~l~~~L~~~~~-~~tiiivsH~ 221 (276)
T PRK14271 174 ---LARTLAVNPEVLLLDEPTSALDPTT---TEKIEEFIRSLAD-RLTVIIVTHN 221 (276)
T ss_pred ---HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHhc-CCEEEEEeCC
Confidence 89999999999988 555543 4566677777765 4678888774
No 456
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=2.7e-09 Score=106.19 Aligned_cols=165 Identities=20% Similarity=0.294 Sum_probs=91.9
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccC--CCCCCCCCCc--------------ccceEE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSY--PGAHIGPEPT--------------TDRFVV 238 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~--p~~~v~~~p~--------------t~r~~i 238 (545)
.++.|+. ..++++++|+..+ +++|+|++|||||||++.|+|... |....++... ..+..+
T Consensus 10 l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i 87 (252)
T PRK14256 10 LNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRV 87 (252)
T ss_pred EEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccE
Confidence 3446654 3589999988877 999999999999999999999752 1000111100 011223
Q ss_pred EEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCcee-------ec-CCCCCC-hhhhhhhhccC
Q 009050 239 VMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 239 ~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq~v~~~~~ 309 (545)
.+.+++....+..++..+....+. ..+ ............++++.+.+ .+ .++.+| |++|++.
T Consensus 88 ~~~~q~~~~~~~~tv~enl~~~~~---~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~---- 158 (252)
T PRK14256 88 GMVFQKPNPFPAMSIYDNVIAGYK---LNG--RVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLC---- 158 (252)
T ss_pred EEEecCCCCCCcCcHHHHHHhHHH---hcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHH----
Confidence 333333222222222000000000 000 00000111122333434433 12 356677 8999988
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.++++.+.+ +..++++.|.
T Consensus 159 ---laral~~~p~llllDEP~~gLD~~~---~~~l~~~l~~~~~-~~tiiivsH~ 206 (252)
T PRK14256 159 ---IARTIAVKPEVILMDEPASALDPIS---TLKIEELIEELKE-KYTIIIVTHN 206 (252)
T ss_pred ---HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHh-CCcEEEEECC
Confidence 89999999999998 566543 4667778888765 4677777773
No 457
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.96 E-value=4.4e-09 Score=101.16 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=88.6
Q ss_pred eEEeCCcc---cCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCce
Q 009050 178 TYRFNDFV---SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNT 252 (545)
Q Consensus 178 ~~~~~~~~---~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t 252 (545)
++.|+... ..++++++|...+ +++|+|++|+|||||++.|+|...| .++...... .+.+.++++...+++.
T Consensus 7 ~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~---~~G~i~~~g-~i~~~~q~~~l~~~t~ 82 (204)
T cd03250 7 SFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK---LSGSVSVPG-SIAYVSQEPWIQNGTI 82 (204)
T ss_pred EEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC---CCCeEEEcC-EEEEEecCchhccCcH
Confidence 34565421 2589999988877 9999999999999999999998742 222221111 3455555544443321
Q ss_pred eEeecCCCCCCcccccccchhhhhhhcCchhhccCc-----eeec-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEE
Q 009050 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI-----TLVD-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (545)
Q Consensus 253 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v-----~liD-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliL 325 (545)
. .+..+.. .. ...............+.+... ...+ .+..+| |++|++. ++++++.+|+++|
T Consensus 83 ~-enl~~~~-~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~-------laral~~~p~lll 150 (204)
T cd03250 83 R-ENILFGK-PF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRIS-------LARAVYSDADIYL 150 (204)
T ss_pred H-HHhccCC-Cc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHH-------HHHHHhcCCCEEE
Confidence 1 1110000 00 000000000000000111111 1122 345566 8999988 8999999999999
Q ss_pred E-----EeCCCCCCccHHHHH-HHHHHhcCCCeEEEEecCC
Q 009050 326 L-----LFDPHKLDISDEFKR-VITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 326 l-----vlD~~~~~~~~~~~~-~l~~L~~~~~~iiiVlNK~ 360 (545)
+ .+|+.. .+.+.+ ++..+...+..++++.|..
T Consensus 151 lDEP~~~LD~~~---~~~l~~~ll~~~~~~~~tvi~~sh~~ 188 (204)
T cd03250 151 LDDPLSAVDAHV---GRHIFENCILGLLLNNKTRILVTHQL 188 (204)
T ss_pred EeCccccCCHHH---HHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 8 455432 233444 4444544567788887743
No 458
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=7.7e-10 Score=111.72 Aligned_cols=169 Identities=23% Similarity=0.324 Sum_probs=94.8
Q ss_pred eeEEeCCc-ccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc------cceEEEEeCCC
Q 009050 177 VTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT------DRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~-~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t------~r~~i~~~~~~ 244 (545)
+++.|+.. ...++++++|+..+ +++|+|++|+|||||++.|+|...| |.+ +.+.+.+ .+..+.+.+++
T Consensus 10 l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 89 (277)
T PRK13642 10 LVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQN 89 (277)
T ss_pred EEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEEC
Confidence 34456431 12479999988877 9999999999999999999999853 110 0000000 01223333333
Q ss_pred cc-ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 245 DR-SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 245 ~~-~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
.. .....++..+..+ +....+ ..+.........+++.+.+. + .|+.+| |++|++. +|++++
T Consensus 90 ~~~~~~~~tv~eni~~---~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------lAraL~ 156 (277)
T PRK13642 90 PDNQFVGATVEDDVAF---GMENQG---IPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVA-------VAGIIA 156 (277)
T ss_pred HHHhhccCCHHHHHHh---hHHHcC---CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH-------HHHHHH
Confidence 21 1221111000000 000000 00001111223444444442 3 356777 8999988 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCCC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKAD 361 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~D 361 (545)
.+|+++|+ .+|+.. ...+.+++..+.+. +..++++.|..+
T Consensus 157 ~~p~llllDEPt~~LD~~~---~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTG---RQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred cCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999998 566543 45677777777654 788888888544
No 459
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=2.2e-09 Score=106.50 Aligned_cols=163 Identities=20% Similarity=0.244 Sum_probs=92.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc------------ccceEEEEeC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT------------TDRFVVVMSG 242 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~------------t~r~~i~~~~ 242 (545)
+++.|++ ..++++++|+..+ +++|+|++|+|||||++.|+|...|..+.++... ..+..+.+.+
T Consensus 8 l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 85 (246)
T PRK14269 8 LNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVF 85 (246)
T ss_pred eEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEe
Confidence 3446665 3588999998887 9999999999999999999997521001111100 0012233344
Q ss_pred CCccccCCceeEeecCCC--CCCcccccccchhhhhhhcCchhhccCcee-------ec-CCCCCC-hhhhhhhhccChH
Q 009050 243 VDDRSIPGNTVAVQADMP--FSGLTTFGTAFLSKFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRAYDFT 311 (545)
Q Consensus 243 ~~~~~~~g~t~~~~~~~~--~~gl~~~~~~~~~~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq~v~~~~~~~ 311 (545)
++....+. ++..+..+. +.+.. ............+++.+.+ .| .++.+| |++|++.
T Consensus 86 q~~~l~~~-tv~eni~~~~~~~~~~------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~------ 152 (246)
T PRK14269 86 QQPNVFVK-SIYENISYAPKLHGMI------KNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLC------ 152 (246)
T ss_pred cCCccccc-cHHHHhhhHHhhcCcc------cChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHH------
Confidence 43332221 110000000 00000 0000111122344444444 23 345667 8999988
Q ss_pred HHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 312 ~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.. +..++++.+.
T Consensus 153 -laral~~~p~lllLDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiii~tH~ 200 (246)
T PRK14269 153 -IARALAIKPKLLLLDEPTSALDPIS---SGVIEELLKELSH-NLSMIMVTHN 200 (246)
T ss_pred -HHHHHhcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHhC-CCEEEEEecC
Confidence 89999999999998 566543 4566777777754 6777887774
No 460
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.95 E-value=6.2e-10 Score=124.77 Aligned_cols=152 Identities=15% Similarity=0.161 Sum_probs=96.3
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCc-------------c------c-ceEEEEe
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPT-------------T------D-RFVVVMS 241 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~-------------t------~-r~~i~~~ 241 (545)
+++++++|+..+ +++|+|+||||||||+++|+|...| |.+. +...- . . +..+.+.
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 589999998877 9999999999999999999999753 2111 11000 0 0 0112222
Q ss_pred CCCc--cccCCceeEeecCCCCCCcccccccc--------hhhhhhhcCchhhccCceee------c-CCCCCC-hhhhh
Q 009050 242 GVDD--RSIPGNTVAVQADMPFSGLTTFGTAF--------LSKFECSQMPHSLLEHITLV------D-TPGVLS-GEKQR 303 (545)
Q Consensus 242 ~~~~--~~~~g~t~~~~~~~~~~gl~~~~~~~--------~~~~~~~~~~~~lL~~v~li------D-TPG~~s-gekq~ 303 (545)
++++ ...+. +....+.. ..+.+......++|+.+.|- | .|+.+| |++||
T Consensus 110 ~Q~~~~~l~~~-------------~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QR 176 (623)
T PRK10261 110 FQEPMTSLNPV-------------FTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQR 176 (623)
T ss_pred EeCchhhcCCC-------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHH
Confidence 2221 11111 11111110 01112223445667777762 3 678888 89999
Q ss_pred hhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCCC
Q 009050 304 TQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKAD 361 (545)
Q Consensus 304 v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~D 361 (545)
+. +|++++.+|+++|+ .+|+.. ..++.++++.+.+ .+..+++|.|..+
T Consensus 177 v~-------iA~AL~~~P~lLllDEPt~~LD~~~---~~~l~~ll~~l~~~~g~tvi~itHdl~ 230 (623)
T PRK10261 177 VM-------IAMALSCRPAVLIADEPTTALDVTI---QAQILQLIKVLQKEMSMGVIFITHDMG 230 (623)
T ss_pred HH-------HHHHHhCCCCEEEEeCCCCccCHHH---HHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 99 89999999999998 677653 5677888888864 4788888888754
No 461
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.95 E-value=3.6e-09 Score=106.49 Aligned_cols=168 Identities=15% Similarity=0.152 Sum_probs=91.3
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCC-----CCCCCCccc------------ceEE
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGA-----HIGPEPTTD------------RFVV 238 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~-----~v~~~p~t~------------r~~i 238 (545)
++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...|.. .+++...-. +..+
T Consensus 8 ~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (272)
T PRK13547 8 HVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLR 85 (272)
T ss_pred EEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhc
Confidence 445655 3489999988776 999999999999999999999874210 001110000 0112
Q ss_pred EEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHH
Q 009050 239 VMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGV 313 (545)
Q Consensus 239 ~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~i 313 (545)
.+.++........++..+.......... ...... .........+++.+.+- | .++.+| |++|++. +
T Consensus 86 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------l 156 (272)
T PRK13547 86 AVLPQAAQPAFAFSAREIVLLGRYPHAR-RAGALT-HRDGEIAWQALALAGATALVGRDVTTLSGGELARVQ-------F 156 (272)
T ss_pred EEecccCCCCCCCcHHHHHhhccccccc-ccccCC-HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH-------H
Confidence 2222222111111110000000000000 000000 00111233444444443 3 456677 8999988 8
Q ss_pred HHHHh---------cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecC
Q 009050 314 TSWFA---------AKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNK 359 (545)
Q Consensus 314 a~~~~---------~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK 359 (545)
+++++ .+|+++|+ .+|+.. ...+.+++..+... +..++++.|.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tviiisH~ 214 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAH---QHRLLDTVRRLARDWNLGVLAIVHD 214 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHH---HHHHHHHHHHHHHhcCCEEEEEECC
Confidence 99998 48999998 566653 56677788777654 7788888884
No 462
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.95 E-value=1.9e-09 Score=107.66 Aligned_cols=163 Identities=20% Similarity=0.311 Sum_probs=91.8
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCC--CCCCCCcccceEEEEeCCCc-------
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGA--HIGPEPTTDRFVVVMSGVDD------- 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~--~v~~~p~t~r~~i~~~~~~~------- 245 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...|.. +.++ .+.+.+.+.
T Consensus 10 v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G-------~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 10 LNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG-------EVLLDGEDLYGPGVDP 80 (258)
T ss_pred EEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcce-------EEEECCEeccccccCh
Confidence 4446655 3489999988877 999999999999999999999863100 0111 111111100
Q ss_pred -cccCCceeEeecCCCCCCcccccccch--------hhhhhhcCchhhccCcee-------ec-CCCCCC-hhhhhhhhc
Q 009050 246 -RSIPGNTVAVQADMPFSGLTTFGTAFL--------SKFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRA 307 (545)
Q Consensus 246 -~~~~g~t~~~~~~~~~~gl~~~~~~~~--------~~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq~v~~~ 307 (545)
....+..+..+....+.......+... .+........++++.+.+ .+ .++.+| |++|++.
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~-- 158 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLC-- 158 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH--
Confidence 000111122221111111111111100 000111223344444443 22 356677 8999998
Q ss_pred cChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 308 ~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..++. +..++++.|.
T Consensus 159 -----laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tviivsH~ 206 (258)
T PRK14241 159 -----IARAIAVEPDVLLMDEPCSALDPIS---TLAIEDLINELKQ-DYTIVIVTHN 206 (258)
T ss_pred -----HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhc-CCEEEEEecC
Confidence 89999999999998 666643 4667778877754 5677887774
No 463
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=3.2e-09 Score=105.53 Aligned_cols=155 Identities=21% Similarity=0.301 Sum_probs=90.4
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccC--CCCCCCCCCcc--------------cceEEE
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSY--PGAHIGPEPTT--------------DRFVVV 239 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~--p~~~v~~~p~t--------------~r~~i~ 239 (545)
++.|+. ..++++++|+..+ +++|+|++|||||||++.|+|... |..+.++.... .+..+.
T Consensus 12 ~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 89 (251)
T PRK14244 12 NLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVG 89 (251)
T ss_pred EEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEE
Confidence 335554 3488999998877 999999999999999999999863 10001111000 011222
Q ss_pred EeCCCccccCCceeEeecCCCCCCcccccccchh---------hhhhhcCchhhccCceee-------c-CCCCCC-hhh
Q 009050 240 MSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLS---------KFECSQMPHSLLEHITLV-------D-TPGVLS-GEK 301 (545)
Q Consensus 240 ~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~---------~~~~~~~~~~lL~~v~li-------D-TPG~~s-gek 301 (545)
+.+++....++ + ...+..+. ..........+++.+.+. | .++.+| |++
T Consensus 90 ~v~q~~~~~~~-t-------------v~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 90 MVFQKPNPFPK-S-------------IYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred EEecCcccccC-C-------------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHH
Confidence 33332222222 1 11111000 000111123344555442 3 356677 899
Q ss_pred hhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 302 q~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
|++. ++++++.+|+++|+ .+|+.. ...+.+++..+.+ +..++++.+.
T Consensus 156 qrv~-------laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tiiiisH~ 207 (251)
T PRK14244 156 QRLC-------IARAIAVKPTMLLMDEPCSALDPVA---TNVIENLIQELKK-NFTIIVVTHS 207 (251)
T ss_pred HHHH-------HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHhc-CCeEEEEeCC
Confidence 9988 89999999999998 566643 4566777777754 6778888773
No 464
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.95 E-value=4e-09 Score=96.25 Aligned_cols=145 Identities=19% Similarity=0.224 Sum_probs=91.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCC---CCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYP---GAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p---~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
.|.|+|.+|+|||||+|+++..++. .+.+|..-.|..-.+
T Consensus 11 KViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V------------------------------------- 53 (210)
T KOG0394|consen 11 KVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV------------------------------------- 53 (210)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE-------------------------------------
Confidence 7999999999999999999988762 111221111100000
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc-------
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG------- 348 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~------- 348 (545)
..-...+.||||+|. |+ |..+--.|.+.+|..++++|...+...+.+..|-+++..
T Consensus 54 ------d~~~vtlQiWDTAGQ---ER--------FqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~P 116 (210)
T KOG0394|consen 54 ------DDRSVTLQIWDTAGQ---ER--------FQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDP 116 (210)
T ss_pred ------cCeEEEEEEEecccH---HH--------hhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCC
Confidence 011136789999997 22 222334678999999999998875444444444444311
Q ss_pred CCCeEEEEecCCCCCCH---HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 349 HDDKIRVVLNKADQVDT---QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 349 ~~~~iiiVlNK~D~~~~---~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
..-|.+++.||+|.-+. +.-......++.+.| ++|.+.+||+.+.++++
T Consensus 117 e~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~g------nipyfEtSAK~~~NV~~ 168 (210)
T KOG0394|consen 117 ETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKG------NIPYFETSAKEATNVDE 168 (210)
T ss_pred CcccEEEEcccccCCCCccceeeHHHHHHHHHhcC------CceeEEecccccccHHH
Confidence 12389999999998652 222233334443333 56668899999999886
No 465
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.95 E-value=1.1e-09 Score=106.61 Aligned_cols=155 Identities=21% Similarity=0.245 Sum_probs=90.6
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc---------------cceEEEEeCCCccccC
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT---------------DRFVVVMSGVDDRSIP 249 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t---------------~r~~i~~~~~~~~~~~ 249 (545)
.++++++|...+ +++|+|++|+|||||++.|+|...| .++.... .+..+.+.++.....+
T Consensus 19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV---QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 478999988776 9999999999999999999998643 1111000 0122333333332222
Q ss_pred CceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEE
Q 009050 250 GNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (545)
Q Consensus 250 g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDli 324 (545)
..++..+..+. . .+... ...........++++.+.+-+ .|..+| |++|++. ++++++.+|+++
T Consensus 96 ~~t~~~n~~~~---~-~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~-------laral~~~p~il 163 (220)
T TIGR02982 96 FLTARQNVQMA---L-ELQPN-LSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVA-------IARALVHRPKLV 163 (220)
T ss_pred CCCHHHHHHHH---H-HhccC-CCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH-------HHHHHhcCCCEE
Confidence 22211000000 0 00000 000011123345556665532 445566 8999988 899999999999
Q ss_pred EE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 325 LL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 325 Ll-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
|+ .+|+.. ...+..+++.+.+ .+..++++.+-
T Consensus 164 llDEP~~~LD~~~---~~~l~~~l~~~~~~~~~tii~~sh~ 201 (220)
T TIGR02982 164 LADEPTAALDSKS---GRDVVELMQKLAREQGCTILIVTHD 201 (220)
T ss_pred EEeCCCCcCCHHH---HHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 98 566643 4566777777765 46788888884
No 466
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.94 E-value=1e-09 Score=108.46 Aligned_cols=147 Identities=24% Similarity=0.307 Sum_probs=89.9
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
.-|+|+++|.+|||||||+|+|++... .+ ...-|.. .+.++.. +-...|
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal-----~p--~drLFAT---------LDpT~h~--------a~Lpsg------- 225 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAAL-----YP--NDRLFAT---------LDPTLHS--------AHLPSG------- 225 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhc-----Cc--cchhhee---------ccchhhh--------ccCCCC-------
Confidence 347999999999999999999997553 11 1111110 1111100 101111
Q ss_pred hhhcCchhhccCceeecCCCCCCh-hhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe--
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSG-EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-- 352 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sg-ekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~-- 352 (545)
..+.+.||-|++|. ..+.++ + |. .+..-+.++|++|.+.|.+++....+...++..|++.+.|
T Consensus 226 ----------~~vlltDTvGFisdLP~~Lva-A--F~-ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~ 291 (410)
T KOG0410|consen 226 ----------NFVLLTDTVGFISDLPIQLVA-A--FQ-ATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSE 291 (410)
T ss_pred ----------cEEEEeechhhhhhCcHHHHH-H--HH-HHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcH
Confidence 26778999999983 223333 1 11 2344578999999999999976666666677777665543
Q ss_pred -----EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 -----IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 -----iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++=|-||+|..... . ...+-..+.+||++|.|+++
T Consensus 292 pkl~~mieVdnkiD~e~~~---------------~-e~E~n~~v~isaltgdgl~e 331 (410)
T KOG0410|consen 292 PKLQNMIEVDNKIDYEEDE---------------V-EEEKNLDVGISALTGDGLEE 331 (410)
T ss_pred HHHhHHHhhcccccccccc---------------C-ccccCCccccccccCccHHH
Confidence 45677887765321 0 01111137899999999886
No 467
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.94 E-value=2.4e-09 Score=104.66 Aligned_cols=169 Identities=17% Similarity=0.278 Sum_probs=94.2
Q ss_pred eeEEeCCc-ccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc------cceEEEEeCCC
Q 009050 177 VTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT------DRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~-~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t------~r~~i~~~~~~ 244 (545)
.++.|++. ...++++++|+..+ +++|+|++|+|||||++.|+|...| |.+ +...+.+ .+..+.+.++.
T Consensus 17 l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 96 (226)
T cd03248 17 VTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQE 96 (226)
T ss_pred EEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecc
Confidence 34456431 12488999988877 9999999999999999999998753 111 0111110 01224444444
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCc--ee---ec-CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI--TL---VD-TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v--~l---iD-TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
....++ ++..+........ ...............+.++.+ .+ .+ .+..+| |++|++. +++++
T Consensus 97 ~~l~~~-tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~-------laral 165 (226)
T cd03248 97 PVLFAR-SLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVA-------IARAL 165 (226)
T ss_pred cHHHhh-hHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH-------HHHHH
Confidence 332222 2110000000000 000000000111122333333 22 23 456677 8999988 89999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
+.+|+++|+ .+|+.. ...+.+++..+.+ +..++++.|..
T Consensus 166 ~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tii~~sh~~ 209 (226)
T cd03248 166 IRNPQVLILDEATSALDAES---EQQVQQALYDWPE-RRTVLVIAHRL 209 (226)
T ss_pred hcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHcC-CCEEEEEECCH
Confidence 999999999 666653 4666777777765 46778887743
No 468
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.94 E-value=3.1e-09 Score=105.55 Aligned_cols=163 Identities=22% Similarity=0.340 Sum_probs=90.0
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccC--CCCCCCCCCcccceEEEEeCCCcc------
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSY--PGAHIGPEPTTDRFVVVMSGVDDR------ 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~--p~~~v~~~p~t~r~~i~~~~~~~~------ 246 (545)
+++.|++ .+++++++|+..+ +++|+|+||||||||++.|+|... |..+.+ ..+.+.+....
T Consensus 9 l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~-------G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 9 LDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIE-------GEVLLDGQDIYKSDIDV 79 (250)
T ss_pred EEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCc-------eEEEECCEEccccccch
Confidence 3445654 3589999988776 999999999999999999999652 100011 11111111100
Q ss_pred --ccCCceeEeecCCCCCCcccccccchh--------hhhhhcCchhhccCcee-------ec-CCCCCC-hhhhhhhhc
Q 009050 247 --SIPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRA 307 (545)
Q Consensus 247 --~~~g~t~~~~~~~~~~gl~~~~~~~~~--------~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq~v~~~ 307 (545)
......+..+....+. .....+.... .........++++.+.+ .| .++.+| |++|++.
T Consensus 80 ~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~-- 156 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLC-- 156 (250)
T ss_pred HHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHH--
Confidence 0001111222111111 1111111000 00011112223333332 24 356677 8999988
Q ss_pred cChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 308 YDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 308 ~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.. +..++++.+..
T Consensus 157 -----laral~~~p~llllDEP~~~LD~~~---~~~l~~~l~~~~~-~~tiii~sH~~ 205 (250)
T PRK14240 157 -----IARALAVEPEVLLMDEPTSALDPIS---TLKIEELIQELKK-DYTIVIVTHNM 205 (250)
T ss_pred -----HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHhc-CCeEEEEEeCH
Confidence 89999999999998 566653 4566777777754 56788887743
No 469
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=1.8e-09 Score=108.81 Aligned_cols=165 Identities=28% Similarity=0.398 Sum_probs=95.1
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC-----c---ccceEEEEeCCC
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP-----T---TDRFVVVMSGVD 244 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p-----~---t~r~~i~~~~~~ 244 (545)
++.|... ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+ . ..+..+.+.+++
T Consensus 8 ~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 86 (275)
T PRK13639 8 KYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQN 86 (275)
T ss_pred EEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeC
Confidence 3455421 2488999998877 9999999999999999999998743 111 00000 0 001223333333
Q ss_pred cc--ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 245 DR--SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 245 ~~--~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
.. ..+. ++. ..+.+ +....+ ..+........++++.+.+- | .|+.+| |++|++. +++++
T Consensus 87 ~~~~~~~~-tv~--e~i~~-~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~-------laral 152 (275)
T PRK13639 87 PDDQLFAP-TVE--EDVAF-GPLNLG---LSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVA-------IAGIL 152 (275)
T ss_pred hhhhhccc-cHH--HHHHH-HHHHcC---CCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHH-------HHHHH
Confidence 21 1111 110 00000 000000 00001112234455555553 3 456777 8999988 89999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
+.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|..
T Consensus 153 ~~~p~llllDEPt~gLD~~~---~~~l~~~l~~l~~~~~til~vtH~~ 197 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMG---ASQIMKLLYDLNKEGITIIISTHDV 197 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHH---HHHHHHHHHHHHHCCCEEEEEecCH
Confidence 999999999 566653 4667788888766677888888843
No 470
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.93 E-value=3.8e-09 Score=121.76 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=89.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+|+|+.++|||||+++|+...- .+... ....+..+.....+...|.|+... ..+.|...... +.....
T Consensus 21 ni~iiGhvd~GKTTL~~~Ll~~~g--~i~~~---~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~----~~~~~~ 91 (843)
T PLN00116 21 NMSVIAHVDHGKSTLTDSLVAAAG--IIAQE---VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDES----LKDFKG 91 (843)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC--Ccccc---cCCceeeccCcHHHHHhCCceecceeEEEeeccccc----cccccc
Confidence 799999999999999999997663 22222 112223344444455667666321 11222100000 000000
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
....--..++|+||||..+ |...+...+..+|..|+|+|+.. ++......+++.+...+.|+++++
T Consensus 92 --~~~~~~~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~~~p~i~~i 157 (843)
T PLN00116 92 --ERDGNEYLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLTV 157 (843)
T ss_pred --ccCCCceEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCC-CCcccHHHHHHHHHHCCCCEEEEE
Confidence 0000003689999999843 33334555789999999999987 777778888998888899999999
Q ss_pred cCCCCC
Q 009050 358 NKADQV 363 (545)
Q Consensus 358 NK~D~~ 363 (545)
||+|..
T Consensus 158 NK~D~~ 163 (843)
T PLN00116 158 NKMDRC 163 (843)
T ss_pred ECCccc
Confidence 999988
No 471
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.93 E-value=2.1e-09 Score=104.92 Aligned_cols=153 Identities=20% Similarity=0.188 Sum_probs=84.8
Q ss_pred cccCceEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCC-cccceEEEEeCCCccccCC--ceeEeecCCCCCCcccc
Q 009050 194 FDAKPMVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEP-TTDRFVVVMSGVDDRSIPG--NTVAVQADMPFSGLTTF 267 (545)
Q Consensus 194 ~~~~~~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p-~t~r~~i~~~~~~~~~~~g--~t~~~~~~~~~~gl~~~ 267 (545)
+..+.+++|+|++|||||||++.|+|...| |.+. .+++ ...+..+.+.+++...... .++ .....+ +....
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv--~~~l~~-~~~~~ 79 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISV--AHTVMS-GRTGH 79 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccH--HHHHHh-ccccc
Confidence 455669999999999999999999998753 1110 1111 0111223444443221110 111 000000 00000
Q ss_pred cccc-hhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCcc
Q 009050 268 GTAF-LSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDIS 336 (545)
Q Consensus 268 ~~~~-~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~ 336 (545)
-..+ ............+++.+.+- + .++.+| |++|++. ++++++.+|+++|+ .+|+.. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~llilDEP~~~LD~~~---~ 149 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVL-------VARALATRPSVLLLDEPFTGLDMPT---Q 149 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCCcccCCHHH---H
Confidence 0000 00001111233344444442 3 567777 8999988 89999999999999 666653 5
Q ss_pred HHHHHHHHHHhcCCCeEEEEecC
Q 009050 337 DEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 337 ~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
..+.+++..+.+.+..++++.|.
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~ 172 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHD 172 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCC
Confidence 67778888887667788888884
No 472
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=2.4e-09 Score=106.99 Aligned_cols=162 Identities=22% Similarity=0.321 Sum_probs=91.4
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCC--CCCCCCcccceEEEEeCCCcc------
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGA--HIGPEPTTDRFVVVMSGVDDR------ 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~--~v~~~p~t~r~~i~~~~~~~~------ 246 (545)
.++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...|.. ..++ .+.+.+....
T Consensus 18 l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-------~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 18 LNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG-------KVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcce-------EEEECCEEcccccchH
Confidence 3445654 3488999998877 999999999999999999999863100 0111 1111111000
Q ss_pred --ccCCceeEeecCCCCCCcccccccchh-h------hhhhcCchhhccCcee-------ec-CCCCCC-hhhhhhhhcc
Q 009050 247 --SIPGNTVAVQADMPFSGLTTFGTAFLS-K------FECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRAY 308 (545)
Q Consensus 247 --~~~g~t~~~~~~~~~~gl~~~~~~~~~-~------~~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq~v~~~~ 308 (545)
...+.....+....+. ....++..+. . .........+++.+.+ .| .++.+| |++|++.
T Consensus 89 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~--- 164 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC--- 164 (258)
T ss_pred HHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH---
Confidence 0011222222211121 1111111000 0 0001112334444433 23 345677 8999998
Q ss_pred ChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 309 ~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.+ +..++++.+.
T Consensus 165 ----laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~l~~-~~tiiivsH~ 212 (258)
T PRK14268 165 ----IARTLAVKPKIILFDEPTSALDPIS---TARIEDLIMNLKK-DYTIVIVTHN 212 (258)
T ss_pred ----HHHHHHcCCCEEEEeCCCcccCHHH---HHHHHHHHHHHhh-CCEEEEEECC
Confidence 89999999999998 566653 5667778877764 6778888773
No 473
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=6.1e-09 Score=99.28 Aligned_cols=139 Identities=22% Similarity=0.257 Sum_probs=81.0
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCc-c-ccCCceeEeecCCCCC
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDD-R-SIPGNTVAVQADMPFS 262 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~-~-~~~g~t~~~~~~~~~~ 262 (545)
+++++++|+..+ +++|+|++|+|||||++.|+|...+ ...+. .+...+... . .........+....+.
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G-------~i~~~g~~~~~~~~~~i~~~~q~~~~~~ 92 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA-GVITG-------EILINGRPLDKNFQRSTGYVEQQDVHSP 92 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcce-------EEEECCEehHHHhhhceEEecccCcccc
Confidence 488999888776 9999999999999999999997420 01111 111111100 0 0011111111111111
Q ss_pred CcccccccchhhhhhhcCchhhccCceeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCcc
Q 009050 263 GLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDIS 336 (545)
Q Consensus 263 gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~ 336 (545)
++....+.... . . .+ .+| |++|++. ++++++.+|+++|+ .+|+.. .
T Consensus 93 ~~tv~~~l~~~---------~---~---~~---~LSgGe~qrv~-------la~al~~~p~vlllDEP~~~LD~~~---~ 144 (192)
T cd03232 93 NLTVREALRFS---------A---L---LR---GLSVEQRKRLT-------IGVELAAKPSILFLDEPTSGLDSQA---A 144 (192)
T ss_pred CCcHHHHHHHH---------H---H---Hh---cCCHHHhHHHH-------HHHHHhcCCcEEEEeCCCcCCCHHH---H
Confidence 11111110000 0 0 01 456 8999988 89999999999998 566543 4
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 337 DEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 337 ~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
..+.+++..+.+.+..++++.|..+
T Consensus 145 ~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 145 YNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 5667778777766788888888543
No 474
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.93 E-value=3.7e-09 Score=104.19 Aligned_cols=159 Identities=18% Similarity=0.242 Sum_probs=88.0
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCc------ccceEEEEeCCCccccCCceeEe
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPT------TDRFVVVMSGVDDRSIPGNTVAV 255 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~------t~r~~i~~~~~~~~~~~g~t~~~ 255 (545)
.++++++|+..+ +++|+|++|||||||++.|+|...| |.+. ...+. ..+..+.+.++.....++ ++.
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~- 94 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDG-TIA- 94 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhh-hHH-
Confidence 478998888776 9999999999999999999998753 1110 01010 001234444444332222 221
Q ss_pred ecCCCCCCcccccccchhhhhhhcCchhhccCc------eeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE--
Q 009050 256 QADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI------TLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-- 326 (545)
Q Consensus 256 ~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v------~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-- 326 (545)
....+. ...................+++..+ .+-..|..+| |++|++. ++++++.+|+++|+
T Consensus 95 -e~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~llllDE 165 (238)
T cd03249 95 -ENIRYG-KPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIA-------IARALLRNPKILLLDE 165 (238)
T ss_pred -HHhhcc-CCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHH-------HHHHHhcCCCEEEEeC
Confidence 000000 0000000000000000111111111 1122456677 7999988 89999999999998
Q ss_pred ---EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 327 ---LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 327 ---vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
.+|+.. ...+.+++..+. .+..++++.|..
T Consensus 166 P~~gLD~~~---~~~l~~~l~~~~-~g~~vi~~sh~~ 198 (238)
T cd03249 166 ATSALDAES---EKLVQEALDRAM-KGRTTIVIAHRL 198 (238)
T ss_pred ccccCCHHH---HHHHHHHHHHhc-CCCEEEEEeCCH
Confidence 666653 566777777776 567888887743
No 475
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=4.5e-09 Score=108.53 Aligned_cols=167 Identities=19% Similarity=0.316 Sum_probs=91.5
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCcc-------c-
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDR-------S- 247 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~-------~- 247 (545)
++.|......++++++|...+ +++|+|++|||||||+++|+|... ...+.|.. ..+.+.+.+.. .
T Consensus 87 s~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~---~~~~~p~~--G~I~idG~~i~~~~~~~~~l 161 (329)
T PRK14257 87 NFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLND---LIEGTSHE--GEIYFLGTNTRSKKISSLEL 161 (329)
T ss_pred EEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---ccCCCCCc--eEEEECCEEccccccchHhh
Confidence 335532223489999999887 999999999999999999999863 11111111 11111111100 0
Q ss_pred cCCceeEeecCCCCCCccccccc-chhhh-------hhhcCchhhccCcee-------ec-CCCCCC-hhhhhhhhccCh
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTA-FLSKF-------ECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRAYDF 310 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~-~~~~~-------~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq~v~~~~~~ 310 (545)
..+..+..+....+.+ ....+. |.... .........++.+.+ ++ .++.+| |++||+.
T Consensus 162 r~~i~~v~q~~~~~~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~----- 235 (329)
T PRK14257 162 RTRIGMVFQKPTPFEM-SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC----- 235 (329)
T ss_pred hccEEEEecCCccCCC-cHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHH-----
Confidence 0112222222222221 111111 00000 000111223333332 23 345566 8999998
Q ss_pred HHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 311 TGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 311 ~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+||+++.+++++|+ .+|+.. ...+.+.+..+.+ +..+++|.|..+
T Consensus 236 --LARAl~~~p~IlLLDEPts~LD~~~---~~~i~~~i~~l~~-~~Tii~iTH~l~ 285 (329)
T PRK14257 236 --IARAIALEPEVLLMDEPTSALDPIA---TAKIEELILELKK-KYSIIIVTHSMA 285 (329)
T ss_pred --HHHHHHhCCCEEEEeCCcccCCHHH---HHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 89999999999998 566643 4556677777765 578888888543
No 476
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=1.7e-09 Score=109.52 Aligned_cols=165 Identities=21% Similarity=0.291 Sum_probs=95.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc--------------cceEEEE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT--------------DRFVVVM 240 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t--------------~r~~i~~ 240 (545)
+++.|... ..++++++|+..+ +++|+|+||||||||++.|+|...| .++...- .+..+.+
T Consensus 11 l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p---~~G~i~i~g~~~~~~~~~~~~~~~~ig~ 86 (283)
T PRK13636 11 LNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPIDYSRKGLMKLRESVGM 86 (283)
T ss_pred EEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CccEEEECCEECCCCcchHHHHHhhEEE
Confidence 34456421 3489999988776 9999999999999999999998743 1111000 0122333
Q ss_pred eCCCcc-ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHH
Q 009050 241 SGVDDR-SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVT 314 (545)
Q Consensus 241 ~~~~~~-~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia 314 (545)
.+++.. .....|+. ..+.+ +....+ ............+++.+.+- | .++.+| |++|++. ++
T Consensus 87 v~q~~~~~~~~~tv~--e~l~~-~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~-------la 153 (283)
T PRK13636 87 VFQDPDNQLFSASVY--QDVSF-GAVNLK---LPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA-------IA 153 (283)
T ss_pred EecCcchhhccccHH--HHHHh-HHHHcC---CCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHH-------HH
Confidence 333321 01111110 00000 000000 01111122334455556554 3 456677 8999988 89
Q ss_pred HHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecCCC
Q 009050 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNKAD 361 (545)
Q Consensus 315 ~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK~D 361 (545)
++++.+|+++|+ .+|+.. ...+.+++..+.+. +..++++.+..+
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~---~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMG---VSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHH---HHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 999999999999 566653 45677888887654 778888888543
No 477
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=2.8e-09 Score=104.96 Aligned_cols=146 Identities=16% Similarity=0.270 Sum_probs=88.4
Q ss_pred cccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc----------cceEEEEeCCCccccCCceeEe
Q 009050 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT----------DRFVVVMSGVDDRSIPGNTVAV 255 (545)
Q Consensus 188 ~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t----------~r~~i~~~~~~~~~~~g~t~~~ 255 (545)
++++++|+..+ +++|+|++|+|||||++.|+|...| .++.... .+..+.+.+++....+.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p---~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~----- 85 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP---DSGKILLNGKDITNLPPEKRDISYVPQNYALFPH----- 85 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcCcCChhHcCEEEEeecCccCCC-----
Confidence 68899988877 9999999999999999999998753 1111000 01122333332222221
Q ss_pred ecCCCCCCcccccccchh-------hhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCE
Q 009050 256 QADMPFSGLTTFGTAFLS-------KFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (545)
Q Consensus 256 ~~~~~~~gl~~~~~~~~~-------~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDl 323 (545)
....++.... .........++++.+.+- + .|..+| |++|++. ++++++.+|++
T Consensus 86 --------~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral~~~p~l 150 (235)
T cd03299 86 --------MTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVA-------IARALVVNPKI 150 (235)
T ss_pred --------ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHH-------HHHHHHcCCCE
Confidence 1111111000 011112223445555542 3 456677 8999988 89999999999
Q ss_pred EEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecC
Q 009050 324 ILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNK 359 (545)
Q Consensus 324 iLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK 359 (545)
+++ .+|+.. ...+.+++..+... +..++++.|.
T Consensus 151 lllDEPt~gLD~~~---~~~l~~~l~~~~~~~~~tili~tH~ 189 (235)
T cd03299 151 LLLDEPFSALDVRT---KEKLREELKKIRKEFGVTVLHVTHD 189 (235)
T ss_pred EEECCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEecC
Confidence 998 566543 45666777776553 7788888773
No 478
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.93 E-value=8.1e-10 Score=108.85 Aligned_cols=150 Identities=16% Similarity=0.167 Sum_probs=85.4
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc-----cceEEEEeCCC-ccccCCceeEe
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT-----DRFVVVMSGVD-DRSIPGNTVAV 255 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t-----~r~~i~~~~~~-~~~~~g~t~~~ 255 (545)
+++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+.. .+..+.+..++ ....+
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~------ 108 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW------ 108 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC------
Confidence 478888888776 9999999999999999999998743 111 0000000 01112222211 11111
Q ss_pred ecCCCCCCccccccc-chh------hhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCE
Q 009050 256 QADMPFSGLTTFGTA-FLS------KFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (545)
Q Consensus 256 ~~~~~~~gl~~~~~~-~~~------~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDl 323 (545)
.+...++. +.. ..........+++.+.+- | .++.+| |++|++. ++++++.+|++
T Consensus 109 -------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~l 174 (236)
T cd03267 109 -------DLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAE-------IAAALLHEPEI 174 (236)
T ss_pred -------CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHHHHhcCCCE
Confidence 11111110 000 001111223344444442 3 346677 8999888 89999999999
Q ss_pred EEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecC
Q 009050 324 ILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNK 359 (545)
Q Consensus 324 iLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK 359 (545)
+|+ .+|+.. ...+.+++..+... +..++++.|.
T Consensus 175 lllDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tiiivsH~ 213 (236)
T cd03267 175 LFLDEPTIGLDVVA---QENIRNFLKEYNRERGTTVLLTSHY 213 (236)
T ss_pred EEEcCCCCCCCHHH---HHHHHHHHHHHHhcCCCEEEEEecC
Confidence 988 556543 56677778777543 6788888774
No 479
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.92 E-value=5e-09 Score=81.63 Aligned_cols=67 Identities=42% Similarity=0.716 Sum_probs=64.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhC
Q 009050 19 YLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQD 85 (545)
Q Consensus 19 y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~ 85 (545)
|+.+|..+|++++|.|+.++...+|.+.|++.+.+.+||..+|.+++|.++.+||+.+|+.+..+|+
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 6789999999999999999999999999999999999999999999999999999999999999875
No 480
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.92 E-value=1.4e-09 Score=119.19 Aligned_cols=161 Identities=16% Similarity=0.254 Sum_probs=96.9
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCcc-------cceEEEEeCCC---ccccCCc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPTT-------DRFVVVMSGVD---DRSIPGN 251 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~t-------~r~~i~~~~~~---~~~~~g~ 251 (545)
.++++++|+..+ +++|+|+||||||||++.|+|...| |.+. .+++.+ .+..+.+.++. ....++.
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 378888888776 9999999999999999999998754 2111 111100 01234455554 1233433
Q ss_pred eeEeecCCCCC----Cccc-ccccchhhhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 252 TVAVQADMPFS----GLTT-FGTAFLSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 252 t~~~~~~~~~~----gl~~-~~~~~~~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
++..+..+... +... ++ +...........++++.+.+- + .|+.+| |++||+. +|++++.+
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~-------lAral~~~ 427 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMG--LFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL-------ISKWLCCC 427 (510)
T ss_pred cHHHHhcccccccccccccccc--ccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHH-------HHHHHhcC
Confidence 33111111100 0000 00 000111112234556666553 3 467788 8999998 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
|+++|+ .+|+.. ...+.++++.+...+..++++.|.
T Consensus 428 p~lLlLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tvi~vsHd 468 (510)
T PRK09700 428 PEVIIFDEPTRGIDVGA---KAEIYKVMRQLADDGKVILMVSSE 468 (510)
T ss_pred CCEEEECCCCCCcCHHH---HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 999999 677653 567778888887667788888884
No 481
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.92 E-value=1.5e-09 Score=118.46 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=96.7
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC--CCCCcc-c----ceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI--GPEPTT-D----RFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v--~~~p~t-~----r~~i~~~~~~~ 245 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||+|.|+|...| |.+. +..... . +..+.+..+..
T Consensus 9 l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~ 86 (490)
T PRK10938 9 GTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRN 86 (490)
T ss_pred EEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCc
Confidence 4456765 3489999988776 9999999999999999999998753 1111 000000 0 00111111111
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
... -.+. ... ..++...+.. ...........++++.+.+- | .|+.+| |++||+. +|++++.+
T Consensus 87 ~~~-~~~~--~~~--~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~al~~~ 153 (490)
T PRK10938 87 NTD-MLSP--GED--DTGRTTAEII-QDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTL-------LCQALMSE 153 (490)
T ss_pred chh-hccc--chh--hccccHHHhc-ccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHH-------HHHHHHcC
Confidence 000 0000 000 0011111100 00001112334556666653 3 568888 8999998 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
|+++|+ .+|+.. ...+.+++..+++.+..++++.|..+
T Consensus 154 p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~~g~tvii~tH~~~ 196 (490)
T PRK10938 154 PDLLILDEPFDGLDVAS---RQQLAELLASLHQSGITLVLVLNRFD 196 (490)
T ss_pred CCEEEEcCCcccCCHHH---HHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 999998 666653 56777888888766778888888754
No 482
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.92 E-value=2.4e-09 Score=104.86 Aligned_cols=159 Identities=19% Similarity=0.257 Sum_probs=88.7
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCC-----c-ccceEEEEeCCCccccCCceeEe
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEP-----T-TDRFVVVMSGVDDRSIPGNTVAV 255 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p-----~-t~r~~i~~~~~~~~~~~g~t~~~ 255 (545)
.++++++|+..+ +++|+|++|+|||||+++|+|...| |.+. ...+ . ..+..+.+.++.....++ ++..
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~ 95 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIME 95 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHH
Confidence 488999988776 9999999999999999999998754 2110 1100 0 112234455554433333 2210
Q ss_pred ecCCCCCCcccccccchhhhhhhcCchhhccCc--ee----ecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE--
Q 009050 256 QADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI--TL----VDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-- 326 (545)
Q Consensus 256 ~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v--~l----iDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-- 326 (545)
+..... . .................+.++.+ .+ -..++.+| |++|++. ++++++.+|+++|+
T Consensus 96 ~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~-------la~al~~~p~llllDE 165 (229)
T cd03254 96 NIRLGR-P--NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLA-------IARAMLRDPKILILDE 165 (229)
T ss_pred HHhccC-C--CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHH-------HHHHHhcCCCEEEEeC
Confidence 000000 0 00000000000000111112111 11 12356677 8999988 89999999999999
Q ss_pred ---EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 327 ---LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 327 ---vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
.+|+.. ...+.+++..+.+ +..++++.+..
T Consensus 166 P~~~LD~~~---~~~l~~~l~~~~~-~~tii~~sh~~ 198 (229)
T cd03254 166 ATSNIDTET---EKLIQEALEKLMK-GRTSIIIAHRL 198 (229)
T ss_pred ccccCCHHH---HHHHHHHHHHhcC-CCEEEEEecCH
Confidence 666653 4567777777754 67788887743
No 483
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.91 E-value=5.6e-09 Score=103.86 Aligned_cols=157 Identities=20% Similarity=0.301 Sum_probs=89.4
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccC--CCCCCCCCCcc--------------cceEE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSY--PGAHIGPEPTT--------------DRFVV 238 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~--p~~~v~~~p~t--------------~r~~i 238 (545)
+++.|++ ..++++++|+..+ +++|+|++|||||||++.|+|... |....++...- .+..+
T Consensus 11 l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 88 (252)
T PRK14239 11 LSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEI 88 (252)
T ss_pred eEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcE
Confidence 3445654 3588999998877 999999999999999999999742 10000111000 01122
Q ss_pred EEeCCCccccCCceeEeecCCCCCCcccccccch-h-------hhhhhcCchhhccCcee-------ec-CCCCCC-hhh
Q 009050 239 VMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFL-S-------KFECSQMPHSLLEHITL-------VD-TPGVLS-GEK 301 (545)
Q Consensus 239 ~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~-~-------~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gek 301 (545)
.+.+++....+ .....+... . ..........+++.+.+ .| .++.+| |++
T Consensus 89 ~~v~q~~~~~~--------------~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 89 GMVFQQPNPFP--------------MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred EEEecCCccCc--------------CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHH
Confidence 23333222221 111111100 0 00001112223333332 23 456677 899
Q ss_pred hhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 302 q~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
|++. ++++++.+|+++|+ .+|+.. ...+.+++..+.. +..++++.|..
T Consensus 155 qrv~-------laral~~~p~llllDEPt~~LD~~~---~~~l~~~l~~~~~-~~tii~~sH~~ 207 (252)
T PRK14239 155 QRVC-------IARVLATSPKIILLDEPTSALDPIS---AGKIEETLLGLKD-DYTMLLVTRSM 207 (252)
T ss_pred HHHH-------HHHHHhcCCCEEEEcCCccccCHHH---HHHHHHHHHHHhh-CCeEEEEECCH
Confidence 9988 89999999999988 566543 4566677777754 46788887743
No 484
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.91 E-value=4.1e-09 Score=105.43 Aligned_cols=164 Identities=21% Similarity=0.286 Sum_probs=91.3
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccC--CCCCCCCCCc--------------ccceEE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSY--PGAHIGPEPT--------------TDRFVV 238 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~--p~~~v~~~p~--------------t~r~~i 238 (545)
.++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|... |..+.++... ..+..+
T Consensus 19 l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i 96 (260)
T PRK10744 19 LNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKV 96 (260)
T ss_pred EEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcce
Confidence 3446654 3489999998877 999999999999999999999863 1001111100 001123
Q ss_pred EEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCcee-------ec-CCCCCC-hhhhhhhhccC
Q 009050 239 VMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 239 ~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq~v~~~~~ 309 (545)
.+.+++....+. ++..+..+... ..+ . ...........++++.+.+ .+ .++.+| |++|++.
T Consensus 97 ~~~~q~~~~~~~-tv~~nl~~~~~---~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~---- 166 (260)
T PRK10744 97 GMVFQKPTPFPM-SIYDNIAFGVR---LFE-K-LSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC---- 166 (260)
T ss_pred EEEecCCccCcC-cHHHHHhhhHh---hcC-C-CCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH----
Confidence 333332222221 11000000000 000 0 0000111223344444443 23 456677 8999988
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++.++.+ +..++++.+.
T Consensus 167 ---laral~~~p~lllLDEPt~~LD~~~---~~~l~~~L~~~~~-~~tiii~sH~ 214 (260)
T PRK10744 167 ---IARGIAIRPEVLLLDEPCSALDPIS---TGRIEELITELKQ-DYTVVIVTHN 214 (260)
T ss_pred ---HHHHHHCCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhc-CCeEEEEeCC
Confidence 89999999999998 566643 4566777777754 5677777773
No 485
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.91 E-value=5.9e-09 Score=103.80 Aligned_cols=164 Identities=16% Similarity=0.236 Sum_probs=88.8
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccc-------
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRS------- 247 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~------- 247 (545)
+++.|++ ..++++++|...+ +++|+|+||||||||++.|+|...+ .+.. + +...+.+.+.....
T Consensus 12 l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~--~--~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 12 LNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL-IPGC--R--ITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC-CCCC--C--cceEEEECCEEccccccchhh
Confidence 3445654 3489999988887 9999999999999999999997521 0000 0 01111111111000
Q ss_pred -cCCceeEeecCCCCCCccccccc-chh-------hhhhhcCchhhccCcee-------ec-CCCCCC-hhhhhhhhccC
Q 009050 248 -IPGNTVAVQADMPFSGLTTFGTA-FLS-------KFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 248 -~~g~t~~~~~~~~~~gl~~~~~~-~~~-------~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq~v~~~~~ 309 (545)
..+..+..+....+.. ...++. +.. .........++++.+.+ .| .++.+| |++|++.
T Consensus 85 ~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~---- 159 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC---- 159 (253)
T ss_pred hhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH----
Confidence 0111122222111111 111110 000 00011112223333332 23 345667 8999988
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.+ +..++++.|.
T Consensus 160 ---laral~~~p~lllLDEP~~gLD~~~---~~~l~~~l~~~~~-~~tvii~sh~ 207 (253)
T PRK14261 160 ---IARTLAVNPEVILMDEPCSALDPIA---TAKIEDLIEDLKK-EYTVIIVTHN 207 (253)
T ss_pred ---HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHHHHHhh-CceEEEEEcC
Confidence 89999999999999 566543 4566777877765 4677777774
No 486
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.91 E-value=3.7e-09 Score=105.37 Aligned_cols=156 Identities=19% Similarity=0.176 Sum_probs=88.2
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCC-CCCCCCcccceEEEEeCCCc---cc-cCCceeEeecCC
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGA-HIGPEPTTDRFVVVMSGVDD---RS-IPGNTVAVQADM 259 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~-~v~~~p~t~r~~i~~~~~~~---~~-~~g~t~~~~~~~ 259 (545)
+++++++|+..+ +++|+|+||||||||++.|+|...|.. +.++. +...+... .. ..+..+..+...
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~-------i~~~g~~i~~~~~~~~~i~~v~q~~~ 89 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGR-------VLLDGKPVAPCALRGRKIATIMQNPR 89 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCE-------EEECCeeccccccccceEEEEecCCc
Confidence 588999988877 999999999999999999999874200 01121 11111100 00 011222222210
Q ss_pred -CCCCcccc-ccc-c----hhhhhhhcCchhhccCceee------c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEE
Q 009050 260 -PFSGLTTF-GTA-F----LSKFECSQMPHSLLEHITLV------D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (545)
Q Consensus 260 -~~~gl~~~-~~~-~----~~~~~~~~~~~~lL~~v~li------D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDli 324 (545)
.+....+. .+. + ...........++++.+.+. | .++.+| |++|++. ++++++.+|+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~-------laral~~~p~lL 162 (254)
T PRK10418 90 SAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMM-------IALALLCEAPFI 162 (254)
T ss_pred cccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHH-------HHHHHhcCCCEE
Confidence 11111010 000 0 00000112234455555543 3 346677 8999988 899999999999
Q ss_pred EE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 325 LL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 325 Ll-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
|+ .+|+.. ...+.+++..+.+ .+..++++.|.
T Consensus 163 lLDEPt~~LD~~~---~~~l~~~L~~~~~~~g~til~~sH~ 200 (254)
T PRK10418 163 IADEPTTDLDVVA---QARILDLLESIVQKRALGMLLVTHD 200 (254)
T ss_pred EEeCCCcccCHHH---HHHHHHHHHHHHHhcCcEEEEEecC
Confidence 88 566542 4566677777754 46788888773
No 487
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.91 E-value=4.1e-08 Score=100.22 Aligned_cols=99 Identities=18% Similarity=0.167 Sum_probs=59.1
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCH
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~ 365 (545)
..+.|+||||....+ ...+..+|.++++.++.. .++...+...+. +.+.++|+||+|+...
T Consensus 127 ~D~viidT~G~~~~e--------------~~i~~~aD~i~vv~~~~~---~~el~~~~~~l~--~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 127 YDVIIVETVGVGQSE--------------VDIANMADTFVVVTIPGT---GDDLQGIKAGLM--EIADIYVVNKADGEGA 187 (300)
T ss_pred CCEEEEeCCCCchhh--------------hHHHHhhceEEEEecCCc---cHHHHHHHHHHh--hhccEEEEEcccccch
Confidence 478899999975321 123577899998876653 355555554443 4678999999999865
Q ss_pred HHHHHHHHHHHHHhc---ccccCCccEEEEeeccCCCccCc
Q 009050 366 QQLMRVYGALMWSLG---KVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 366 ~~l~~v~~~l~~~l~---k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.........+...+. +....-.++.+++||.+++|+++
T Consensus 188 ~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~ 228 (300)
T TIGR00750 188 TNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDE 228 (300)
T ss_pred hHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHH
Confidence 432221111111111 11111112348999999999886
No 488
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.91 E-value=3.1e-09 Score=113.75 Aligned_cols=171 Identities=22% Similarity=0.333 Sum_probs=113.4
Q ss_pred ccCceeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCC-CCCCCCCcccceEEEEeCCC----
Q 009050 172 LKPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPG-AHIGPEPTTDRFVVVMSGVD---- 244 (545)
Q Consensus 172 l~~l~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~-~~v~~~p~t~r~~i~~~~~~---- 244 (545)
+++|.+.|.-..-...++++++|+..+ +++|+|.+||||||+.++|.|...++ .+++ ..+.+.+.+
T Consensus 8 V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~-------G~I~~~g~dl~~l 80 (539)
T COG1123 8 VENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITS-------GEVILDGRDLLGL 80 (539)
T ss_pred EeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccc-------eEEEECCcchhcC
Confidence 445566554332223589999999988 99999999999999999999988532 2222 233333321
Q ss_pred ----ccccCCcee--Eeec-CCCCCCcccccccch---------hhhhhhcCchhhccCceeec------CCCCCC-hhh
Q 009050 245 ----DRSIPGNTV--AVQA-DMPFSGLTTFGTAFL---------SKFECSQMPHSLLEHITLVD------TPGVLS-GEK 301 (545)
Q Consensus 245 ----~~~~~g~t~--~~~~-~~~~~gl~~~~~~~~---------~~~~~~~~~~~lL~~v~liD------TPG~~s-gek 301 (545)
...+.|..+ .++. .-.++...+.|+... .+.+....+.++|+.+.|-| .|-.+| |++
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 122344433 3333 233555555555421 12234455667777777754 677788 799
Q ss_pred hhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHh-cCCCeEEEEecC
Q 009050 302 QRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNK 359 (545)
Q Consensus 302 q~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~-~~~~~iiiVlNK 359 (545)
||+. +|++++.+|+++|+ .+|++ +..+..++++.+. +.+..++++.|-
T Consensus 161 QRv~-------iAmALa~~P~LLIaDEPTTaLDvt---~q~qIL~llk~l~~e~g~a~l~ITHD 214 (539)
T COG1123 161 QRVM-------IAMALALKPKLLIADEPTTALDVT---TQAQILDLLKDLQRELGMAVLFITHD 214 (539)
T ss_pred HHHH-------HHHHHhCCCCEEEECCCccccCHH---HHHHHHHHHHHHHHHcCcEEEEEcCC
Confidence 9998 89999999999998 66765 3677888888886 567788887774
No 489
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=5.9e-09 Score=102.58 Aligned_cols=159 Identities=18% Similarity=0.255 Sum_probs=88.7
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCC-----c-ccceEEEEeCCCccccCCceeEe
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEP-----T-TDRFVVVMSGVDDRSIPGNTVAV 255 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p-----~-t~r~~i~~~~~~~~~~~g~t~~~ 255 (545)
..+++++|+..+ +++|+|+||||||||++.|+|...| |.+. .... . ..+..+.+.+++....++ |+..
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~ 93 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFND-TIGY 93 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcc-hHHH
Confidence 478898888766 9999999999999999999998753 1110 0000 0 012234555555443332 2210
Q ss_pred ecCCCCCCcccccccchhhhhhhcCchhhccCce-----eec-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE--
Q 009050 256 QADMPFSGLTTFGTAFLSKFECSQMPHSLLEHIT-----LVD-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-- 326 (545)
Q Consensus 256 ~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~-----liD-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-- 326 (545)
+ ..+... .................+.+..+. +.+ .+..+| |++|++. ++++++.+|+++|+
T Consensus 94 n--l~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~-------la~aL~~~p~llllDE 163 (236)
T cd03253 94 N--IRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVA-------IARAILKNPPILLLDE 163 (236)
T ss_pred H--HhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH-------HHHHHhcCCCEEEEeC
Confidence 0 000000 000000000000001111111211 111 245667 8999988 89999999999999
Q ss_pred ---EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 327 ---LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 327 ---vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
.+|+.. ...+.+++..+.+ +..++++.+..
T Consensus 164 P~~~LD~~~---~~~l~~~l~~~~~-~~tiii~sh~~ 196 (236)
T cd03253 164 ATSALDTHT---EREIQAALRDVSK-GRTTIVIAHRL 196 (236)
T ss_pred CcccCCHHH---HHHHHHHHHHhcC-CCEEEEEcCCH
Confidence 666653 4667777877776 77888887743
No 490
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.91 E-value=3e-09 Score=106.86 Aligned_cols=155 Identities=18% Similarity=0.220 Sum_probs=89.1
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc------------ceEEEEeCCCcc--ccCC
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD------------RFVVVMSGVDDR--SIPG 250 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~------------r~~i~~~~~~~~--~~~g 250 (545)
+++++++|+..+ +++|+|+||||||||++.|+|...| .++..... +..+.+.++... ..+.
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 103 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPR 103 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcc
Confidence 589999999877 9999999999999999999998753 11111000 111222222211 0111
Q ss_pred ceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEE
Q 009050 251 NTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (545)
Q Consensus 251 ~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDli 324 (545)
.++. ..+.+ .. .. +.-...........++++.+.+- + .++.+| |++|++. ++++++.+|+++
T Consensus 104 ~tv~--~~l~~-~~-~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~-------laral~~~p~ll 171 (267)
T PRK15112 104 QRIS--QILDF-PL-RL-NTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG-------LARALILRPKVI 171 (267)
T ss_pred hhHH--HHHHH-HH-Hh-ccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH-------HHHHHHhCCCEE
Confidence 1100 00000 00 00 00000001112234455566552 2 356777 8999988 899999999999
Q ss_pred EE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 325 LL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 325 Ll-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
|+ .+|+.. ...+.+++..+.+ .+..++++.|.
T Consensus 172 lLDEPt~~LD~~~---~~~l~~~l~~~~~~~g~tviivsH~ 209 (267)
T PRK15112 172 IADEALASLDMSM---RSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred EEcCCcccCCHHH---HHHHHHHHHHHHHHcCcEEEEEeCC
Confidence 98 566543 4566677777765 36788888884
No 491
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.91 E-value=4.6e-09 Score=105.54 Aligned_cols=164 Identities=20% Similarity=0.274 Sum_probs=89.9
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccC-----C--CCC-CCCCCc--------ccceEE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSY-----P--GAH-IGPEPT--------TDRFVV 238 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~-----p--~~~-v~~~p~--------t~r~~i 238 (545)
.++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|... | |.+ +.+.+- ..+..+
T Consensus 27 l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 104 (268)
T PRK14248 27 LSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREI 104 (268)
T ss_pred EEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccE
Confidence 4445654 3489999988877 999999999999999999999642 1 110 000000 001123
Q ss_pred EEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCcee-------ec-CCCCCC-hhhhhhhhccC
Q 009050 239 VMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 239 ~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq~v~~~~~ 309 (545)
.+.+++....++ ++..+....+ ...+. .............+..+.+ .+ .++.+| |++|++.
T Consensus 105 ~~v~q~~~~~~~-tv~enl~~~~---~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~---- 174 (268)
T PRK14248 105 GMVFQKPNPFPK-SIYNNITHAL---KYAGE--RRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC---- 174 (268)
T ss_pred EEEecCCccCcc-cHHHHHHHHH---HhcCC--CcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH----
Confidence 333333222222 1100000000 00000 0000001112223333322 23 456777 8999988
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.. +..++++.|.
T Consensus 175 ---laral~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~-~~tiii~tH~ 222 (268)
T PRK14248 175 ---IARTLAMKPAVLLLDEPASALDPIS---NAKIEELITELKE-EYSIIIVTHN 222 (268)
T ss_pred ---HHHHHhCCCCEEEEcCCCcccCHHH---HHHHHHHHHHHhc-CCEEEEEEeC
Confidence 89999999999998 666653 5667778887765 4677777773
No 492
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.90 E-value=2.3e-09 Score=106.31 Aligned_cols=143 Identities=21% Similarity=0.200 Sum_probs=81.6
Q ss_pred cccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchh
Q 009050 194 FDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLS 273 (545)
Q Consensus 194 ~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~ 273 (545)
+..+.+++|+|+||||||||++.|+|...| .++........+.+..+........|+... +.+ .....+
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p---~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~--l~~-~~~~~~----- 90 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKP---DEGDIEIELDTVSYKPQYIKADYEGTVRDL--LSS-ITKDFY----- 90 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCCeEEECCceEEEecccccCCCCCCHHHH--HHH-Hhhhcc-----
Confidence 344559999999999999999999998743 222221111133333333221111111000 000 000000
Q ss_pred hhhhhcCchhhccCceee---c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHH
Q 009050 274 KFECSQMPHSLLEHITLV---D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVI 343 (545)
Q Consensus 274 ~~~~~~~~~~lL~~v~li---D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l 343 (545)
.......++++.+.+- | .++.+| |++|++. +|++++.+|+++|+ .+|+.. ...+.+++
T Consensus 91 --~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~-------iaraL~~~p~llllDEPt~~LD~~~---~~~l~~~l 158 (246)
T cd03237 91 --THPYFKTEIAKPLQIEQILDREVPELSGGELQRVA-------IAACLSKDADIYLLDEPSAYLDVEQ---RLMASKVI 158 (246)
T ss_pred --ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCCcccCCHHH---HHHHHHHH
Confidence 0000122344444442 3 456777 8999998 89999999999998 566543 45666777
Q ss_pred HHHhc-CCCeEEEEecC
Q 009050 344 TSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 344 ~~L~~-~~~~iiiVlNK 359 (545)
..+.. .+..+++|.|.
T Consensus 159 ~~~~~~~~~tiiivsHd 175 (246)
T cd03237 159 RRFAENNEKTAFVVEHD 175 (246)
T ss_pred HHHHHhcCCEEEEEeCC
Confidence 77754 46788888884
No 493
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=4.4e-09 Score=105.15 Aligned_cols=165 Identities=25% Similarity=0.351 Sum_probs=92.3
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCc--------c
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDD--------R 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~--------~ 246 (545)
+++.|+. ..++++++|+..+ +++|+|++|+|||||++.|+|...|. + |..+...+.+.+... .
T Consensus 13 l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---~--~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 13 LSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE---G--PVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred EEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcc---c--CCccceEEEECCEeccccccchHh
Confidence 3445654 3488999998877 99999999999999999999976321 0 000111122111110 0
Q ss_pred ccCCceeEeecCCCCCCcccccccch--------hhhhhhcCchhhccCcee-------ec-CCCCCC-hhhhhhhhccC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFL--------SKFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~--------~~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq~v~~~~~ 309 (545)
...+..+..+....+. .....+... ...........++..+.+ .| .++.+| |++|++.
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~---- 160 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLC---- 160 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH----
Confidence 0112223333222221 221111110 000111122233333332 23 345667 8999988
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.+ +..++++.|..
T Consensus 161 ---laral~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~-~~tiii~tH~~ 209 (259)
T PRK14260 161 ---IARALAIKPKVLLMDEPCSALDPIA---TMKVEELIHSLRS-ELTIAIVTHNM 209 (259)
T ss_pred ---HHHHHhcCCCEEEEcCCCccCCHHH---HHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 89999999999988 566543 4566777777765 47788888843
No 494
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=6.4e-09 Score=103.34 Aligned_cols=161 Identities=20% Similarity=0.314 Sum_probs=88.8
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHccc--CCCCCCCCCCcccceEEEEeCCCcc-------
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS--YPGAHIGPEPTTDRFVVVMSGVDDR------- 246 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~--~p~~~v~~~p~t~r~~i~~~~~~~~------- 246 (545)
++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|.. .|....++ .+...+....
T Consensus 10 ~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-------~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 10 NFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG-------EIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCce-------EEEECCEecccccccHH
Confidence 445655 3488998888776 99999999999999999999862 11000011 1111111100
Q ss_pred -ccCCceeEeecCCCCCCcccccccchh--------hhhhhcCchhhccCcee-------ec-CCCCCC-hhhhhhhhcc
Q 009050 247 -SIPGNTVAVQADMPFSGLTTFGTAFLS--------KFECSQMPHSLLEHITL-------VD-TPGVLS-GEKQRTQRAY 308 (545)
Q Consensus 247 -~~~g~t~~~~~~~~~~gl~~~~~~~~~--------~~~~~~~~~~lL~~v~l-------iD-TPG~~s-gekq~v~~~~ 308 (545)
...+..+..+....+. .....+.... ..........+++.+.+ .+ .++.+| |++|++.
T Consensus 81 ~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~--- 156 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLC--- 156 (250)
T ss_pred HHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHH---
Confidence 0011222222211111 1111111000 00011122344444443 22 356677 8999988
Q ss_pred ChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 309 ~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++++.+|+++|+ .+|+.. ...+.+++..+.+ +..++++.+.
T Consensus 157 ----laral~~~p~lllLDEPt~~LD~~~---~~~l~~~l~~~~~-~~tiiivtH~ 204 (250)
T PRK14245 157 ----IARAMAVSPSVLLMDEPASALDPIS---TAKVEELIHELKK-DYTIVIVTHN 204 (250)
T ss_pred ----HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHhc-CCeEEEEeCC
Confidence 89999999999998 566643 4667778877754 5778887773
No 495
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.90 E-value=6.7e-09 Score=94.31 Aligned_cols=112 Identities=21% Similarity=0.337 Sum_probs=73.6
Q ss_pred eEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEe
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAV 255 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~ 255 (545)
.+.|+. ..++++++|+..+ .++|+|++|+|||||+|.|+|...| .++ .+. +.|.
T Consensus 7 ~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G-------~i~--------~~~~---- 62 (144)
T cd03221 7 SKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEG-------IVT--------WGST---- 62 (144)
T ss_pred EEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---Cce-------EEE--------ECCe----
Confidence 335554 2488888888776 9999999999999999999998732 111 111 0110
Q ss_pred ecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeC
Q 009050 256 QADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFD 329 (545)
Q Consensus 256 ~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD 329 (545)
..+.++.. +| |++|++. ++++++.+|+++|+ .+|
T Consensus 63 ------------------------------~~i~~~~~---lS~G~~~rv~-------laral~~~p~illlDEP~~~LD 102 (144)
T cd03221 63 ------------------------------VKIGYFEQ---LSGGEKMRLA-------LAKLLLENPNLLLLDEPTNHLD 102 (144)
T ss_pred ------------------------------EEEEEEcc---CCHHHHHHHH-------HHHHHhcCCCEEEEeCCccCCC
Confidence 01122211 55 8899888 89999999999988 455
Q ss_pred CCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 330 PHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 330 ~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+.. ...+.++++.+ +..++++.|.
T Consensus 103 ~~~---~~~l~~~l~~~---~~til~~th~ 126 (144)
T cd03221 103 LES---IEALEEALKEY---PGTVILVSHD 126 (144)
T ss_pred HHH---HHHHHHHHHHc---CCEEEEEECC
Confidence 432 34445555544 4577777774
No 496
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.90 E-value=4.1e-09 Score=119.71 Aligned_cols=128 Identities=19% Similarity=0.211 Sum_probs=83.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-C----CCCCCcccccccch
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-D----MPFSGLTTFGTAFL 272 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~----~~~~gl~~~~~~~~ 272 (545)
..|+++|+.++|||||+++|+... ..++.. .......+........+|.|+.... . ..+.+
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~---g~i~~~--~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~--------- 85 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGA---GMISEE--LAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNE--------- 85 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHc---CCCchh--cCCceeecCCCHHHHhhcchhhcccceeEEeecCCc---------
Confidence 379999999999999999998543 111111 1111222233333334555542111 0 11111
Q ss_pred hhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe
Q 009050 273 SKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK 352 (545)
Q Consensus 273 ~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ 352 (545)
.+++|+||||... |...+...+..+|.+|+++|+.. +...+...+++.+...+.|
T Consensus 86 -------------~~i~liDTPG~~~-----------f~~~~~~al~~aD~~llVvda~~-g~~~~t~~~~~~~~~~~~p 140 (720)
T TIGR00490 86 -------------YLINLIDTPGHVD-----------FGGDVTRAMRAVDGAIVVVCAVE-GVMPQTETVLRQALKENVK 140 (720)
T ss_pred -------------eEEEEEeCCCccc-----------cHHHHHHHHHhcCEEEEEEecCC-CCCccHHHHHHHHHHcCCC
Confidence 3789999999954 22234566899999999999986 5566677777777677788
Q ss_pred EEEEecCCCCCC
Q 009050 353 IRVVLNKADQVD 364 (545)
Q Consensus 353 iiiVlNK~D~~~ 364 (545)
+++++||+|...
T Consensus 141 ~ivviNKiD~~~ 152 (720)
T TIGR00490 141 PVLFINKVDRLI 152 (720)
T ss_pred EEEEEEChhccc
Confidence 899999999863
No 497
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=3.4e-09 Score=107.67 Aligned_cols=151 Identities=23% Similarity=0.266 Sum_probs=87.9
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc-----------ccceEEEEeCCCccccCC
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT-----------TDRFVVVMSGVDDRSIPG 250 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~-----------t~r~~i~~~~~~~~~~~g 250 (545)
.++++++|+..+ +++|+|++|||||||++.|+|...| |.+ +...+. ..+..+.+.++....
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~--- 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY--- 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcch---
Confidence 488999988877 9999999999999999999998753 111 000000 001122222222100
Q ss_pred ceeEeecCCCCCCccccccc-ch------hhhhhhcCchhhccCcee----ec-CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 251 NTVAVQADMPFSGLTTFGTA-FL------SKFECSQMPHSLLEHITL----VD-TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 251 ~t~~~~~~~~~~gl~~~~~~-~~------~~~~~~~~~~~lL~~v~l----iD-TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
..+. .....+. +. ...........+++.+.+ .| .++.+| |++|++. +++++
T Consensus 102 --------~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~-------laral 165 (289)
T PRK13645 102 --------QLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVA-------LAGII 165 (289)
T ss_pred --------hhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHH-------HHHHH
Confidence 0010 0111110 00 000111122334444444 23 356677 8999998 89999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
+.+|+++|+ .+|+.. ...+.+++..+.+ .+..++++.|.
T Consensus 166 ~~~p~lLlLDEPt~~LD~~~---~~~l~~~l~~~~~~~~~tiiiisH~ 210 (289)
T PRK13645 166 AMDGNTLVLDEPTGGLDPKG---EEDFINLFERLNKEYKKRIIMVTHN 210 (289)
T ss_pred HhCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEecC
Confidence 999999998 666653 4666777777754 46788888884
No 498
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.7e-08 Score=87.81 Aligned_cols=149 Identities=18% Similarity=0.274 Sum_probs=95.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..++++|+.|+|||.|+.......+.+ .++. ++...+ |..+ ++ . |...
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkD-dssH-------TiGveF-------gSrI-in----V-GgK~----------- 57 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKD-DSSH-------TIGVEF-------GSRI-VN----V-GGKT----------- 57 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcc-cccc-------eeeeee-------ccee-ee----e-cCcE-----------
Confidence 368999999999999999998877521 0111 111000 0000 00 0 1100
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~ii 354 (545)
-.+.||||+|. |+ |..++|.+.+.|-..++|.|.+..+...++..|+...+ ..++-++
T Consensus 58 --------vKLQIWDTAGQ---Er--------FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvvi 118 (214)
T KOG0086|consen 58 --------VKLQIWDTAGQ---ER--------FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVI 118 (214)
T ss_pred --------EEEEEeecccH---HH--------HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEE
Confidence 26789999997 33 55689999999999999999998665666667776544 3456788
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++.||.|+-...++.-.... ......++....+||++|+++++
T Consensus 119 L~GnKkDL~~~R~VtflEAs------~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 119 LCGNKKDLDPEREVTFLEAS------RFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred EeCChhhcChhhhhhHHHHH------hhhcccceeeeeecccccccHHH
Confidence 88999998765544221111 11222344446799999999886
No 499
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.89 E-value=1.8e-09 Score=117.92 Aligned_cols=171 Identities=15% Similarity=0.198 Sum_probs=96.2
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC---CCCC-CCCCc-------ccceEEEEeCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP---GAHI-GPEPT-------TDRFVVVMSGV 243 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p---~~~v-~~~p~-------t~r~~i~~~~~ 243 (545)
.++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...+ |.+. ...+. ..+..+.+.++
T Consensus 266 l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 343 (490)
T PRK10938 266 GVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSS 343 (490)
T ss_pred eEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECH
Confidence 3445654 2478999998876 9999999999999999999996421 1000 00000 00112333333
Q ss_pred CccccCC--ceeEeecCCCCCCcccccccchh--hhhhhcCchhhccCceee----c-CCCCCC-hhhhhhhhccChHHH
Q 009050 244 DDRSIPG--NTVAVQADMPFSGLTTFGTAFLS--KFECSQMPHSLLEHITLV----D-TPGVLS-GEKQRTQRAYDFTGV 313 (545)
Q Consensus 244 ~~~~~~g--~t~~~~~~~~~~gl~~~~~~~~~--~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~v~~~~~~~~i 313 (545)
....... .++ .... +.+..... .... .........++++.+.+. | .|+.+| |++||+. +
T Consensus 344 ~~~~~~~~~~~~--~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~-------l 412 (490)
T PRK10938 344 SLHLDYRVSTSV--RNVI-LSGFFDSI-GIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLAL-------I 412 (490)
T ss_pred HHHhhcccCCcH--HHHH-Hhcccccc-ccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHH-------H
Confidence 2211110 011 0000 00000000 0000 001112234555565554 3 357788 8999998 8
Q ss_pred HHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCC-eEEEEecCCCCC
Q 009050 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDD-KIRVVLNKADQV 363 (545)
Q Consensus 314 a~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~-~iiiVlNK~D~~ 363 (545)
|++++.+|+++|+ .+|+.. ...+.+++..+.+.+. .++++.|..+.+
T Consensus 413 a~al~~~p~lllLDEPt~gLD~~~---~~~l~~~L~~l~~~~~~tviivsHd~~~~ 465 (490)
T PRK10938 413 VRALVKHPTLLILDEPLQGLDPLN---RQLVRRFVDVLISEGETQLLFVSHHAEDA 465 (490)
T ss_pred HHHHhcCCCEEEEcCccccCCHHH---HHHHHHHHHHHHhcCCcEEEEEecchhhh
Confidence 9999999999998 677654 5677788888876554 588888866544
No 500
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1.8e-09 Score=118.25 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=95.5
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCCC-CCCCcc------c-ceEEEEeCCCcc---ccCCc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAHI-GPEPTT------D-RFVVVMSGVDDR---SIPGN 251 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~v-~~~p~t------~-r~~i~~~~~~~~---~~~g~ 251 (545)
.++++++|...+ +++|+|+||||||||++.|+|...| |.+. .+++.. . +..+.+.++... ..+..
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 477888888777 9999999999999999999998753 1111 010000 0 112333333321 22222
Q ss_pred eeEeecCCCCCCccccccc-chhhhhhhcCchhhccCcee----ec-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEE
Q 009050 252 TVAVQADMPFSGLTTFGTA-FLSKFECSQMPHSLLEHITL----VD-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLI 324 (545)
Q Consensus 252 t~~~~~~~~~~gl~~~~~~-~~~~~~~~~~~~~lL~~v~l----iD-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDli 324 (545)
++..+..+...... .... +...........++++.+.+ .| .|+.+| |++||+. +|++++.+|+++
T Consensus 347 tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~-------la~al~~~p~ll 418 (501)
T PRK11288 347 SVADNINISARRHH-LRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAI-------LGRWLSEDMKVI 418 (501)
T ss_pred CHHHHhccccchhh-cccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHH-------HHHHHccCCCEE
Confidence 22100000000000 0000 00011111234456666665 23 468888 8999998 899999999999
Q ss_pred EE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 325 LL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 325 Ll-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
|+ .+|... ..++.+++..+.+.+..+++|.|..
T Consensus 419 lLDEPt~~LD~~~---~~~l~~~l~~l~~~g~tviivsHd~ 456 (501)
T PRK11288 419 LLDEPTRGIDVGA---KHEIYNVIYELAAQGVAVLFVSSDL 456 (501)
T ss_pred EEcCCCCCCCHhH---HHHHHHHHHHHHhCCCEEEEECCCH
Confidence 99 566653 5677788888887788888888843
Done!