Query 009050
Match_columns 545
No_of_seqs 617 out of 5403
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 17:41:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qpt_A EH domain-containing pr 100.0 9.9E-52 3.4E-56 451.4 29.4 398 139-541 7-405 (550)
2 3iev_A GTP-binding protein ERA 99.9 1.2E-29 4.1E-34 258.3 -4.5 231 199-478 12-269 (308)
3 3fia_A Intersectin-1; EH 1 dom 99.9 1.8E-25 6E-30 193.2 11.4 99 4-104 20-118 (121)
4 1wf3_A GTP-binding protein; GT 99.9 6.3E-27 2.1E-31 237.3 -1.5 226 198-477 8-258 (301)
5 1ega_A Protein (GTP-binding pr 99.9 2.3E-26 7.9E-31 233.3 -4.6 229 198-477 9-259 (301)
6 3gee_A MNME, tRNA modification 99.9 2E-25 6.8E-30 239.3 -12.0 258 83-403 116-387 (476)
7 3geh_A MNME, tRNA modification 99.9 1.2E-24 4.1E-29 232.4 -9.8 245 90-403 117-373 (462)
8 1eh2_A EPS15; calcium binding, 99.8 4.8E-20 1.6E-24 157.1 12.3 98 6-110 4-101 (106)
9 2qpt_A EH domain-containing pr 99.8 4.8E-20 1.6E-24 201.2 10.4 97 7-111 449-545 (550)
10 1xzp_A Probable tRNA modificat 99.8 1.1E-22 3.6E-27 218.3 -11.5 250 90-403 137-394 (482)
11 2jq6_A EH domain-containing pr 99.8 1.1E-18 3.7E-23 155.3 11.1 96 7-110 42-137 (139)
12 1c07_A Protein (epidermal grow 99.8 3.1E-18 1.1E-22 143.1 10.0 88 8-95 1-89 (95)
13 1fi6_A EH domain protein REPS1 99.7 4.1E-18 1.4E-22 141.4 10.4 87 9-95 1-87 (92)
14 1qjt_A EH1, epidermal growth f 99.7 5.1E-18 1.7E-22 142.9 9.1 91 14-109 8-98 (99)
15 1iq3_A Ralbp1-interacting prot 99.7 2.2E-18 7.7E-23 147.9 6.5 99 5-109 10-108 (110)
16 4dhe_A Probable GTP-binding pr 99.7 9.6E-17 3.3E-21 154.2 13.6 162 195-403 27-200 (223)
17 3iby_A Ferrous iron transport 99.7 2.3E-17 8E-22 163.1 4.9 149 198-403 2-156 (256)
18 2j69_A Bacterial dynamin-like 99.7 9E-16 3.1E-20 172.0 16.8 207 139-365 16-245 (695)
19 1svi_A GTP-binding protein YSX 99.7 1.2E-15 4.1E-20 143.1 14.8 160 196-403 22-184 (195)
20 3pqc_A Probable GTP-binding pr 99.7 1.6E-15 5.4E-20 141.8 15.4 155 195-403 21-183 (195)
21 2kgr_A Intersectin-1; structur 99.6 1.1E-15 3.9E-20 131.2 11.9 99 6-110 3-101 (111)
22 1mky_A Probable GTP-binding pr 99.6 3.1E-16 1.1E-20 167.0 8.6 154 198-403 2-155 (439)
23 3b1v_A Ferrous iron uptake tra 99.6 4.4E-16 1.5E-20 155.2 7.8 148 198-403 4-153 (272)
24 3i8s_A Ferrous iron transport 99.6 1.4E-16 4.7E-21 159.1 3.5 153 198-403 4-158 (274)
25 1m2o_B GTP-binding protein SAR 99.6 2.2E-15 7.7E-20 141.5 11.3 157 187-403 12-181 (190)
26 2hjg_A GTP-binding protein ENG 99.6 1.6E-15 5.6E-20 161.3 11.2 159 198-403 176-338 (436)
27 3a1s_A Iron(II) transport prot 99.6 4.1E-16 1.4E-20 154.3 6.1 149 198-403 6-156 (258)
28 2aka_B Dynamin-1; fusion prote 99.6 7.6E-16 2.6E-20 155.0 8.2 109 286-403 125-242 (299)
29 2wji_A Ferrous iron transport 99.6 4.8E-16 1.7E-20 142.5 6.1 149 198-403 4-154 (165)
30 3clv_A RAB5 protein, putative; 99.6 1.4E-14 4.9E-19 135.8 15.9 179 198-403 8-193 (208)
31 1upt_A ARL1, ADP-ribosylation 99.6 6.1E-15 2.1E-19 134.8 12.9 147 197-403 7-158 (171)
32 2hjg_A GTP-binding protein ENG 99.6 1.3E-15 4.5E-20 162.0 9.3 151 198-403 4-154 (436)
33 4bas_A ADP-ribosylation factor 99.6 3.1E-15 1.1E-19 140.5 10.8 150 198-403 18-178 (199)
34 1f6b_A SAR1; gtpases, N-termin 99.6 2.1E-15 7.1E-20 142.8 9.5 161 187-403 14-188 (198)
35 3zvr_A Dynamin-1; hydrolase, D 99.6 5.2E-15 1.8E-19 165.0 13.9 226 197-442 51-336 (772)
36 1r8s_A ADP-ribosylation factor 99.6 1.4E-14 4.8E-19 131.6 14.1 145 199-403 2-151 (164)
37 4dcu_A GTP-binding protein ENG 99.6 4.6E-15 1.6E-19 158.8 12.6 160 197-403 195-358 (456)
38 1zj6_A ADP-ribosylation factor 99.6 9E-15 3.1E-19 136.5 12.2 146 198-403 17-167 (187)
39 3k53_A Ferrous iron transport 99.6 1.2E-15 4E-20 152.0 6.2 149 198-403 4-155 (271)
40 2g6b_A RAS-related protein RAB 99.6 1.4E-14 4.8E-19 133.7 12.9 149 198-403 11-163 (180)
41 4dcu_A GTP-binding protein ENG 99.6 3.8E-15 1.3E-19 159.4 10.0 152 197-403 23-174 (456)
42 1mky_A Probable GTP-binding pr 99.6 1.2E-14 4.2E-19 154.7 13.6 159 198-403 181-344 (439)
43 2nzj_A GTP-binding protein REM 99.6 3E-14 1E-18 130.7 14.3 149 198-403 5-158 (175)
44 2gj8_A MNME, tRNA modification 99.6 2.4E-15 8.3E-20 139.0 6.9 148 198-403 5-155 (172)
45 2dyk_A GTP-binding protein; GT 99.6 5E-15 1.7E-19 134.0 8.4 150 198-403 2-151 (161)
46 1zd9_A ADP-ribosylation factor 99.6 2E-14 6.8E-19 134.4 12.7 147 198-403 23-174 (188)
47 2h57_A ADP-ribosylation factor 99.6 1.3E-14 4.3E-19 135.8 11.2 149 198-403 22-176 (190)
48 2h17_A ADP-ribosylation factor 99.6 8.4E-15 2.9E-19 136.1 9.9 147 198-403 22-172 (181)
49 3q72_A GTP-binding protein RAD 99.6 6.2E-15 2.1E-19 134.2 8.6 146 198-403 3-153 (166)
50 1fzq_A ADP-ribosylation factor 99.6 1.3E-14 4.4E-19 135.1 10.8 146 198-403 17-167 (181)
51 1ksh_A ARF-like protein 2; sma 99.6 1.2E-14 4.1E-19 135.3 10.6 148 197-403 18-169 (186)
52 2qu8_A Putative nucleolar GTP- 99.6 4E-14 1.4E-18 136.8 14.6 161 198-403 30-194 (228)
53 2lkc_A Translation initiation 99.5 1.5E-14 5.2E-19 133.2 10.7 149 197-403 8-160 (178)
54 3t5d_A Septin-7; GTP-binding p 99.5 1.6E-14 5.6E-19 144.0 11.5 79 320-403 115-193 (274)
55 1zbd_A Rabphilin-3A; G protein 99.5 1.2E-13 4.2E-18 130.3 16.8 148 197-403 8-160 (203)
56 2erx_A GTP-binding protein DI- 99.5 3.3E-14 1.1E-18 129.7 12.4 147 198-403 4-156 (172)
57 1jwy_B Dynamin A GTPase domain 99.5 1.8E-14 6E-19 146.2 11.7 78 286-365 131-213 (315)
58 3cph_A RAS-related protein SEC 99.5 2E-14 6.9E-19 136.6 11.3 148 194-403 17-171 (213)
59 3tkl_A RAS-related protein RAB 99.5 2.4E-14 8.4E-19 134.1 11.6 148 198-403 17-168 (196)
60 3bc1_A RAS-related protein RAB 99.5 9.9E-14 3.4E-18 129.2 15.6 151 197-403 11-174 (195)
61 2gf9_A RAS-related protein RAB 99.5 4.8E-14 1.6E-18 131.7 13.1 148 196-403 21-174 (189)
62 1c1y_A RAS-related protein RAP 99.5 4.1E-14 1.4E-18 128.6 12.1 147 199-403 5-156 (167)
63 1ek0_A Protein (GTP-binding pr 99.5 3.6E-14 1.2E-18 129.2 11.6 147 199-403 5-158 (170)
64 2wjg_A FEOB, ferrous iron tran 99.5 2E-15 7E-20 140.6 3.3 149 198-403 8-158 (188)
65 1g16_A RAS-related protein SEC 99.5 8.3E-15 2.8E-19 133.6 7.3 148 198-403 4-154 (170)
66 1wms_A RAB-9, RAB9, RAS-relate 99.5 2.2E-14 7.4E-19 132.0 10.0 149 198-403 8-163 (177)
67 1moz_A ARL1, ADP-ribosylation 99.5 9.9E-15 3.4E-19 135.2 7.4 147 197-403 18-169 (183)
68 1u8z_A RAS-related protein RAL 99.5 4.7E-14 1.6E-18 128.0 11.7 143 198-403 5-156 (168)
69 1z2a_A RAS-related protein RAB 99.5 2.4E-14 8.3E-19 130.2 9.8 148 198-403 6-156 (168)
70 2e87_A Hypothetical protein PH 99.5 9.8E-14 3.4E-18 143.7 15.6 151 198-403 168-325 (357)
71 1z0f_A RAB14, member RAS oncog 99.5 7.7E-14 2.6E-18 128.2 13.1 146 197-403 15-167 (179)
72 2x2e_A Dynamin-1; nitration, h 99.5 1.6E-14 5.5E-19 149.4 9.4 109 286-403 130-247 (353)
73 2efe_B Small GTP-binding prote 99.5 7.1E-14 2.4E-18 129.0 12.7 146 198-403 13-164 (181)
74 4dsu_A GTPase KRAS, isoform 2B 99.5 7.5E-14 2.6E-18 129.7 12.9 146 199-403 6-155 (189)
75 2b6h_A ADP-ribosylation factor 99.5 3.2E-14 1.1E-18 133.8 10.4 147 197-403 29-180 (192)
76 1z08_A RAS-related protein RAB 99.5 3.7E-14 1.3E-18 129.4 10.5 147 198-403 7-158 (170)
77 2ce2_X GTPase HRAS; signaling 99.5 4.7E-14 1.6E-18 127.5 11.0 146 199-403 5-154 (166)
78 3tw8_B RAS-related protein RAB 99.5 6.1E-14 2.1E-18 129.2 11.6 148 198-403 10-160 (181)
79 2oil_A CATX-8, RAS-related pro 99.5 1.1E-13 3.8E-18 129.6 13.5 147 198-403 26-177 (193)
80 2x77_A ADP-ribosylation factor 99.5 1.9E-14 6.4E-19 134.4 8.1 147 197-403 22-173 (189)
81 2a5j_A RAS-related protein RAB 99.5 9.6E-14 3.3E-18 130.0 12.8 147 198-403 22-173 (191)
82 2y8e_A RAB-protein 6, GH09086P 99.5 6.1E-14 2.1E-18 128.9 11.3 147 198-403 15-166 (179)
83 1z0j_A RAB-22, RAS-related pro 99.5 1.2E-13 4E-18 125.9 13.0 148 198-403 7-158 (170)
84 2fg5_A RAB-22B, RAS-related pr 99.5 8.1E-14 2.8E-18 130.7 12.1 150 196-403 22-175 (192)
85 2gf0_A GTP-binding protein DI- 99.5 3.8E-14 1.3E-18 133.1 9.7 147 198-403 9-160 (199)
86 2fu5_C RAS-related protein RAB 99.5 2.9E-14 9.9E-19 132.2 8.7 144 198-403 9-160 (183)
87 2cxx_A Probable GTP-binding pr 99.5 4.3E-14 1.5E-18 131.6 9.8 151 199-403 3-173 (190)
88 2bov_A RAla, RAS-related prote 99.5 1.3E-13 4.5E-18 130.1 13.3 146 198-403 15-166 (206)
89 2bme_A RAB4A, RAS-related prot 99.5 2E-13 6.8E-18 126.7 14.3 148 197-403 10-162 (186)
90 2fn4_A P23, RAS-related protei 99.5 6.6E-14 2.3E-18 128.9 10.6 147 198-403 10-161 (181)
91 1x3s_A RAS-related protein RAB 99.5 1.2E-13 4E-18 129.1 12.5 144 198-403 16-167 (195)
92 1ky3_A GTP-binding protein YPT 99.5 1.7E-13 5.7E-18 126.4 13.3 149 198-403 9-167 (182)
93 3t1o_A Gliding protein MGLA; G 99.5 4E-13 1.4E-17 125.5 16.0 99 287-403 75-181 (198)
94 2ew1_A RAS-related protein RAB 99.5 1.3E-13 4.5E-18 130.8 12.9 149 197-403 26-178 (201)
95 2iwr_A Centaurin gamma 1; ANK 99.5 4.2E-13 1.5E-17 123.6 15.9 137 199-403 9-158 (178)
96 1r2q_A RAS-related protein RAB 99.5 1E-13 3.4E-18 126.2 11.4 146 198-403 7-158 (170)
97 2bcg_Y Protein YP2, GTP-bindin 99.5 8.8E-14 3E-18 131.8 11.5 149 197-403 8-160 (206)
98 1kao_A RAP2A; GTP-binding prot 99.5 7.5E-14 2.6E-18 126.5 10.4 146 199-403 5-155 (167)
99 2hup_A RAS-related protein RAB 99.5 1.2E-13 4.2E-18 130.8 12.2 145 198-403 30-182 (201)
100 2il1_A RAB12; G-protein, GDP, 99.5 2.6E-14 8.8E-19 134.3 7.3 149 198-403 27-179 (192)
101 2a9k_A RAS-related protein RAL 99.5 1.5E-13 5E-18 127.3 12.3 146 198-403 19-170 (187)
102 2hxs_A RAB-26, RAS-related pro 99.5 7.4E-14 2.5E-18 128.5 9.9 145 198-403 7-162 (178)
103 1vg8_A RAS-related protein RAB 99.5 2.9E-14 9.9E-19 134.9 7.1 149 198-403 9-164 (207)
104 2xtp_A GTPase IMAP family memb 99.5 1.2E-14 4.2E-19 143.5 4.6 157 198-403 23-197 (260)
105 2atx_A Small GTP binding prote 99.5 1.3E-13 4.5E-18 129.2 11.4 152 198-403 19-182 (194)
106 3j2k_7 ERF3, eukaryotic polype 99.5 1.4E-13 4.7E-18 146.4 13.0 169 198-403 18-214 (439)
107 1mh1_A RAC1; GTP-binding, GTPa 99.5 4.1E-14 1.4E-18 131.1 7.9 151 199-403 7-169 (186)
108 3cbq_A GTP-binding protein REM 99.5 1.4E-13 4.7E-18 129.9 11.5 148 198-403 24-177 (195)
109 2yc2_C IFT27, small RAB-relate 99.5 1.2E-13 4E-18 130.5 10.9 152 198-403 21-181 (208)
110 4gzl_A RAS-related C3 botulinu 99.5 3.4E-14 1.2E-18 134.9 7.2 151 199-403 32-194 (204)
111 3dz8_A RAS-related protein RAB 99.5 9.9E-14 3.4E-18 129.9 10.0 150 196-403 22-175 (191)
112 3q85_A GTP-binding protein REM 99.5 1.5E-13 5E-18 125.4 10.7 148 199-403 4-156 (169)
113 3con_A GTPase NRAS; structural 99.5 3.3E-13 1.1E-17 125.9 13.3 143 198-403 22-172 (190)
114 2f7s_A C25KG, RAS-related prot 99.5 1.1E-13 3.6E-18 132.3 10.1 161 195-403 23-188 (217)
115 3oes_A GTPase rhebl1; small GT 99.5 1.1E-13 3.9E-18 130.7 10.0 149 196-403 23-176 (201)
116 2p5s_A RAS and EF-hand domain 99.5 1.2E-13 4.1E-18 130.3 10.1 148 198-403 29-186 (199)
117 2fh5_B SR-beta, signal recogni 99.5 6.1E-13 2.1E-17 126.7 15.0 115 198-365 8-130 (214)
118 3t5g_A GTP-binding protein RHE 99.5 9.7E-14 3.3E-18 128.3 9.0 143 198-403 7-158 (181)
119 3reg_A RHO-like small GTPase; 99.5 1.2E-13 4.2E-18 129.5 9.6 144 198-403 24-177 (194)
120 1z06_A RAS-related protein RAB 99.5 4.7E-13 1.6E-17 124.9 13.4 145 198-400 21-171 (189)
121 3kkq_A RAS-related protein M-R 99.5 3E-13 1E-17 125.3 11.7 142 199-403 20-171 (183)
122 2gco_A H9, RHO-related GTP-bin 99.5 9.7E-14 3.3E-18 131.3 8.5 151 199-403 27-189 (201)
123 2fv8_A H6, RHO-related GTP-bin 99.5 4.6E-14 1.6E-18 134.2 6.2 151 199-403 27-189 (207)
124 3ihw_A Centg3; RAS, centaurin, 99.5 1.2E-12 4E-17 122.2 15.7 137 199-403 22-169 (184)
125 2o52_A RAS-related protein RAB 99.5 2E-13 6.9E-18 129.0 10.5 147 197-403 25-177 (200)
126 2atv_A RERG, RAS-like estrogen 99.4 6.8E-13 2.3E-17 124.7 13.9 142 198-403 29-180 (196)
127 1lnz_A SPO0B-associated GTP-bi 99.4 2.6E-14 9E-19 146.7 4.5 153 198-403 159-319 (342)
128 4djt_A GTP-binding nuclear pro 99.4 4.6E-14 1.6E-18 135.0 5.8 150 198-403 12-164 (218)
129 3o47_A ADP-ribosylation factor 99.4 1.5E-13 5.3E-18 140.6 10.1 145 199-403 167-316 (329)
130 3r7w_A Gtpase1, GTP-binding pr 99.4 2E-13 7E-18 138.3 10.8 158 198-402 4-169 (307)
131 2j0v_A RAC-like GTP-binding pr 99.4 1.3E-13 4.3E-18 131.3 8.7 148 198-403 10-169 (212)
132 3llu_A RAS-related GTP-binding 99.4 4.3E-13 1.5E-17 126.3 12.2 153 198-403 21-186 (196)
133 3lvq_E ARF-GAP with SH3 domain 99.4 2.8E-13 9.5E-18 146.4 12.2 146 198-403 323-473 (497)
134 1zun_B Sulfate adenylate trans 99.4 2.6E-13 8.9E-18 144.2 11.7 169 198-403 25-213 (434)
135 2g3y_A GTP-binding protein GEM 99.4 8.4E-13 2.9E-17 126.5 14.1 151 198-403 38-192 (211)
136 2j1l_A RHO-related GTP-binding 99.4 1.1E-13 3.9E-18 132.3 8.0 152 198-403 35-198 (214)
137 3cpj_B GTP-binding protein YPT 99.4 2E-13 6.7E-18 131.4 9.5 147 198-403 14-165 (223)
138 3sjy_A Translation initiation 99.4 1E-12 3.6E-17 138.2 15.4 171 198-403 9-181 (403)
139 1wb1_A Translation elongation 99.4 2.6E-13 9E-18 145.9 10.6 158 198-403 20-178 (482)
140 3q3j_B RHO-related GTP-binding 99.4 4E-13 1.4E-17 128.6 10.6 115 198-364 28-145 (214)
141 3p26_A Elongation factor 1 alp 99.4 5.9E-13 2E-17 143.4 13.0 168 199-403 35-227 (483)
142 3bwd_D RAC-like GTP-binding pr 99.4 7.1E-14 2.4E-18 129.1 5.0 148 198-403 9-170 (182)
143 3t34_A Dynamin-related protein 99.4 4.8E-13 1.6E-17 138.7 11.8 204 188-403 26-250 (360)
144 2zej_A Dardarin, leucine-rich 99.4 1.7E-13 5.8E-18 127.7 7.6 159 198-402 3-166 (184)
145 4dkx_A RAS-related protein RAB 99.4 1.3E-12 4.5E-17 125.6 13.8 143 199-403 15-165 (216)
146 1pui_A ENGB, probable GTP-bind 99.4 9.2E-13 3.1E-17 125.0 12.6 165 187-403 16-188 (210)
147 3lxw_A GTPase IMAP family memb 99.4 3.5E-13 1.2E-17 132.2 9.5 122 198-364 22-153 (247)
148 3c5c_A RAS-like protein 12; GD 99.4 6.5E-13 2.2E-17 124.1 10.7 141 199-403 23-175 (187)
149 3lxx_A GTPase IMAP family memb 99.4 1.7E-13 5.7E-18 133.6 6.9 126 198-369 30-164 (239)
150 2qtf_A Protein HFLX, GTP-bindi 99.4 2.8E-13 9.5E-18 140.4 8.8 155 199-403 181-343 (364)
151 3qq5_A Small GTP-binding prote 99.4 1.3E-13 4.6E-18 145.2 6.4 152 197-403 34-185 (423)
152 1nrj_B SR-beta, signal recogni 99.4 2.5E-13 8.7E-18 129.8 7.7 116 197-365 12-135 (218)
153 2q3h_A RAS homolog gene family 99.4 4.9E-13 1.7E-17 126.0 9.5 152 198-403 21-184 (201)
154 2ged_A SR-beta, signal recogni 99.4 3.4E-13 1.2E-17 126.1 8.3 127 197-376 48-182 (193)
155 1wxq_A GTP-binding protein; st 99.4 1.3E-13 4.5E-18 144.4 6.0 36 199-237 2-37 (397)
156 3izq_1 HBS1P, elongation facto 99.4 4.2E-13 1.5E-17 148.0 10.0 169 198-403 168-361 (611)
157 3th5_A RAS-related C3 botulinu 99.1 2.7E-14 9.2E-19 135.2 0.0 152 198-403 31-194 (204)
158 1m7b_A RND3/RHOE small GTP-bin 99.4 6.6E-13 2.3E-17 123.5 9.4 115 198-364 8-125 (184)
159 3tui_C Methionine import ATP-b 99.4 5.4E-14 1.9E-18 144.7 1.7 167 177-359 30-223 (366)
160 2qag_C Septin-7; cell cycle, c 99.4 5.2E-14 1.8E-18 148.0 1.6 219 179-463 19-263 (418)
161 3rlf_A Maltose/maltodextrin im 99.4 9.9E-14 3.4E-18 143.6 3.6 166 176-360 8-194 (381)
162 1gwn_A RHO-related GTP-binding 99.4 1.5E-12 5E-17 123.9 11.1 115 198-364 29-146 (205)
163 2xex_A Elongation factor G; GT 99.4 7.6E-13 2.6E-17 148.2 10.1 163 198-403 11-174 (693)
164 4a9a_A Ribosome-interacting GT 99.4 3.9E-13 1.3E-17 139.1 6.7 117 199-363 74-195 (376)
165 3l0i_B RAS-related protein RAB 99.4 1.9E-14 6.5E-19 135.8 -3.1 148 198-403 34-185 (199)
166 3gj0_A GTP-binding nuclear pro 99.4 3.2E-13 1.1E-17 129.5 5.3 146 198-403 16-164 (221)
167 3tif_A Uncharacterized ABC tra 99.4 1.3E-13 4.4E-18 134.4 2.4 160 187-359 19-205 (235)
168 3fvq_A Fe(3+) IONS import ATP- 99.3 4.6E-13 1.6E-17 137.6 5.9 165 177-359 10-198 (359)
169 1g6h_A High-affinity branched- 99.3 4.3E-13 1.5E-17 132.5 5.4 174 177-363 13-216 (257)
170 2cjw_A GTP-binding protein GEM 99.3 3E-12 1E-16 120.3 11.0 151 198-403 7-161 (192)
171 2www_A Methylmalonic aciduria 99.3 9.5E-13 3.2E-17 135.8 8.0 98 287-403 168-268 (349)
172 3mca_A HBS1, elongation factor 99.3 3.2E-13 1.1E-17 148.6 4.5 170 199-403 179-372 (592)
173 2yyz_A Sugar ABC transporter, 99.3 5.7E-13 2E-17 137.3 5.8 164 177-359 9-193 (359)
174 1vpl_A ABC transporter, ATP-bi 99.3 2.9E-13 9.9E-18 133.5 2.6 158 177-359 21-205 (256)
175 1v43_A Sugar-binding transport 99.3 7.5E-13 2.6E-17 137.0 5.7 165 176-359 16-201 (372)
176 1f60_A Elongation factor EEF1A 99.3 8.1E-13 2.8E-17 141.2 6.0 104 287-403 86-201 (458)
177 2c78_A Elongation factor TU-A; 99.3 1.3E-12 4.5E-17 137.5 7.4 104 287-402 76-182 (405)
178 3izy_P Translation initiation 99.3 1.2E-13 4.1E-18 149.4 -0.6 153 196-403 3-157 (537)
179 2elf_A Protein translation elo 99.3 7.3E-12 2.5E-16 130.0 12.3 102 287-403 61-169 (370)
180 2olj_A Amino acid ABC transpor 99.3 5.1E-13 1.7E-17 132.2 3.0 163 176-358 29-217 (263)
181 2it1_A 362AA long hypothetical 99.3 7.4E-13 2.5E-17 136.6 4.4 164 177-359 9-193 (362)
182 1z47_A CYSA, putative ABC-tran 99.3 6E-13 2E-17 136.8 3.6 163 177-358 20-204 (355)
183 3tr5_A RF-3, peptide chain rel 99.3 8.5E-12 2.9E-16 135.2 12.8 66 287-364 83-148 (528)
184 1h65_A Chloroplast outer envel 99.3 7.6E-12 2.6E-16 124.3 11.1 121 198-365 40-169 (270)
185 2pcj_A ABC transporter, lipopr 99.3 1.9E-12 6.4E-17 125.2 6.5 164 177-358 10-198 (224)
186 1sgw_A Putative ABC transporte 99.3 1.6E-12 5.4E-17 124.7 5.8 165 176-363 15-196 (214)
187 1oxx_K GLCV, glucose, ABC tran 99.3 8.6E-13 2.9E-17 135.9 4.1 165 177-359 9-200 (353)
188 1r5b_A Eukaryotic peptide chai 99.3 5.7E-12 1.9E-16 135.0 10.5 169 199-403 45-241 (467)
189 2h5e_A Peptide chain release f 99.3 7.3E-12 2.5E-16 135.9 11.3 166 198-403 14-184 (529)
190 3def_A T7I23.11 protein; chlor 99.3 1E-11 3.5E-16 122.8 11.3 121 198-363 37-164 (262)
191 1jny_A EF-1-alpha, elongation 99.3 1.2E-11 4.2E-16 131.3 12.6 104 287-403 85-202 (435)
192 3gfo_A Cobalt import ATP-bindi 99.3 5.9E-13 2E-17 132.5 2.2 164 176-363 12-207 (275)
193 2ywe_A GTP-binding protein LEP 99.3 5.7E-12 1.9E-16 138.0 10.1 164 198-403 7-173 (600)
194 1dar_A EF-G, elongation factor 99.3 8.3E-12 2.9E-16 139.8 11.6 140 198-375 13-153 (691)
195 1d2e_A Elongation factor TU (E 99.3 3.9E-12 1.3E-16 133.5 8.2 164 199-401 5-172 (397)
196 1b0u_A Histidine permease; ABC 99.3 8.5E-13 2.9E-17 130.7 2.7 162 177-358 12-211 (262)
197 1kk1_A EIF2gamma; initiation o 99.3 1.3E-11 4.3E-16 130.2 11.9 105 286-403 83-189 (410)
198 1ji0_A ABC transporter; ATP bi 99.3 1E-12 3.5E-17 128.4 3.3 162 177-358 12-197 (240)
199 4g1u_C Hemin import ATP-bindin 99.3 8.4E-13 2.9E-17 130.9 2.4 164 176-359 16-207 (266)
200 2qag_B Septin-6, protein NEDD5 99.3 3E-12 1E-16 134.2 6.4 158 178-377 22-203 (427)
201 1g7s_A Translation initiation 99.3 9.6E-12 3.3E-16 136.5 10.5 66 287-364 71-136 (594)
202 3cb4_D GTP-binding protein LEP 99.3 8.7E-12 3E-16 136.8 10.0 165 199-403 6-171 (599)
203 1udx_A The GTP-binding protein 99.3 1.1E-11 3.7E-16 130.3 10.2 158 191-403 149-314 (416)
204 2qm8_A GTPase/ATPase; G protei 99.3 1.1E-11 3.8E-16 127.1 10.0 35 187-221 43-79 (337)
205 2p67_A LAO/AO transport system 99.3 3.2E-12 1.1E-16 131.4 6.0 99 286-403 149-250 (341)
206 3dpu_A RAB family protein; roc 99.3 3.4E-12 1.2E-16 139.1 6.5 153 198-403 42-197 (535)
207 2wkq_A NPH1-1, RAS-related C3 99.3 4.6E-12 1.6E-16 128.7 6.9 152 198-403 156-319 (332)
208 2nq2_C Hypothetical ABC transp 99.3 3.5E-12 1.2E-16 125.5 5.7 163 177-358 10-187 (253)
209 1g29_1 MALK, maltose transport 99.2 4.5E-12 1.5E-16 131.4 6.6 158 177-359 9-199 (372)
210 2f9l_A RAB11B, member RAS onco 99.2 4.5E-11 1.5E-15 112.6 13.0 147 198-403 6-157 (199)
211 2yz2_A Putative ABC transporte 99.2 2.7E-12 9.4E-17 127.3 4.3 160 187-363 21-201 (266)
212 2ihy_A ABC transporter, ATP-bi 99.2 1.2E-12 4.1E-17 130.7 1.1 173 176-363 26-226 (279)
213 1s0u_A EIF-2-gamma, translatio 99.2 1.9E-11 6.4E-16 128.8 10.2 105 286-403 81-187 (408)
214 2onk_A Molybdate/tungstate ABC 99.2 3.8E-12 1.3E-16 124.3 4.4 160 177-358 7-185 (240)
215 2dy1_A Elongation factor G; tr 99.2 1.3E-11 4.5E-16 137.6 9.3 158 195-395 7-165 (665)
216 2d2e_A SUFC protein; ABC-ATPas 99.2 1.4E-12 4.8E-17 128.2 1.1 163 177-361 9-204 (250)
217 1zo1_I IF2, translation initia 99.2 8.3E-12 2.9E-16 133.9 6.7 147 197-403 4-156 (501)
218 3p32_A Probable GTPase RV1496/ 99.2 3.1E-11 1.1E-15 124.7 10.8 99 286-403 172-273 (355)
219 3d31_A Sulfate/molybdate ABC t 99.2 2.7E-12 9.3E-17 131.8 2.3 157 177-359 7-187 (348)
220 2qnr_A Septin-2, protein NEDD5 99.2 1.3E-11 4.3E-16 124.7 6.7 78 320-403 126-203 (301)
221 1mv5_A LMRA, multidrug resista 99.2 4.7E-11 1.6E-15 116.8 10.5 166 177-358 7-196 (243)
222 2qag_A Septin-2, protein NEDD5 99.2 2.9E-11 9.9E-16 125.2 9.2 75 321-400 146-220 (361)
223 3sop_A Neuronal-specific septi 99.2 9.7E-11 3.3E-15 116.3 12.5 58 318-376 109-166 (270)
224 2zu0_C Probable ATP-dependent 99.2 2.7E-12 9.1E-17 127.4 0.8 174 176-361 25-225 (267)
225 2ff7_A Alpha-hemolysin translo 99.2 1.3E-11 4.3E-16 121.1 5.6 170 177-361 13-205 (247)
226 1oix_A RAS-related protein RAB 99.2 7.5E-11 2.6E-15 110.5 10.3 149 197-403 29-181 (191)
227 2ixe_A Antigen peptide transpo 99.2 1.8E-11 6.3E-16 121.6 5.3 169 177-358 22-215 (271)
228 3avx_A Elongation factor TS, e 99.1 4.8E-11 1.6E-15 137.0 8.5 161 199-399 298-463 (1289)
229 3c5h_A Glucocorticoid receptor 99.1 1.5E-10 5E-15 114.0 9.5 77 320-403 162-244 (255)
230 3nh6_A ATP-binding cassette SU 99.1 4.7E-11 1.6E-15 120.5 5.4 167 177-359 59-248 (306)
231 1n0u_A EF-2, elongation factor 99.1 1.1E-10 3.7E-15 133.4 8.9 143 198-363 20-163 (842)
232 2rdo_7 EF-G, elongation factor 99.1 4.5E-10 1.5E-14 125.9 13.4 149 197-376 10-159 (704)
233 2ghi_A Transport protein; mult 99.1 4.2E-11 1.4E-15 118.3 4.4 171 176-362 22-216 (260)
234 2qi9_C Vitamin B12 import ATP- 99.1 6.2E-11 2.1E-15 116.3 5.0 151 187-358 14-191 (249)
235 3r7w_B Gtpase2, GTP-binding pr 99.1 1.6E-09 5.4E-14 109.7 15.0 71 287-366 47-122 (331)
236 3gd7_A Fusion complex of cysti 99.1 1.9E-10 6.4E-15 119.8 7.7 161 176-361 24-215 (390)
237 2pze_A Cystic fibrosis transme 99.0 1.1E-10 3.6E-15 113.2 5.2 134 177-326 12-154 (229)
238 2dby_A GTP-binding protein; GD 99.0 3.7E-10 1.3E-14 116.8 8.9 103 199-332 3-111 (368)
239 3ec1_A YQEH GTPase; atnos1, at 99.0 4.5E-11 1.5E-15 124.1 2.0 138 197-381 162-305 (369)
240 3h2y_A GTPase family protein; 99.0 6.8E-11 2.3E-15 122.7 3.0 139 198-381 161-304 (368)
241 2cbz_A Multidrug resistance-as 99.0 2.5E-10 8.5E-15 111.2 6.7 165 177-362 9-191 (237)
242 3vqt_A RF-3, peptide chain rel 99.0 1.9E-10 6.5E-15 125.3 6.3 145 199-380 33-181 (548)
243 1tq4_A IIGP1, interferon-induc 99.0 1.9E-08 6.7E-13 105.3 20.8 155 198-403 70-242 (413)
244 4fn5_A EF-G 1, elongation fact 99.0 7.2E-10 2.5E-14 124.6 10.5 152 199-381 15-167 (709)
245 3j25_A Tetracycline resistance 99.0 1.4E-10 4.6E-15 128.9 4.3 129 199-364 4-133 (638)
246 3qf4_A ABC transporter, ATP-bi 99.0 5.5E-10 1.9E-14 122.9 7.9 169 176-359 346-537 (587)
247 3b5x_A Lipid A export ATP-bind 99.0 5.5E-10 1.9E-14 122.9 7.8 170 176-359 346-538 (582)
248 2pjz_A Hypothetical protein ST 99.0 9.9E-11 3.4E-15 115.7 1.7 147 187-362 19-187 (263)
249 3b60_A Lipid A export ATP-bind 99.0 9.1E-10 3.1E-14 121.1 9.1 163 177-362 347-541 (582)
250 2j37_W Signal recognition part 98.9 8.6E-11 3E-15 126.1 0.1 176 286-476 184-407 (504)
251 2yl4_A ATP-binding cassette SU 98.9 7.6E-10 2.6E-14 122.1 7.6 172 176-359 346-541 (595)
252 4a82_A Cystic fibrosis transme 98.9 4.4E-10 1.5E-14 123.5 4.8 171 177-362 345-538 (578)
253 1jal_A YCHF protein; nucleotid 98.9 1.5E-09 5E-14 111.8 7.8 119 198-363 3-122 (363)
254 2v3c_C SRP54, signal recogniti 98.9 2.9E-09 1E-13 112.4 10.2 170 286-476 181-399 (432)
255 3qf4_B Uncharacterized ABC tra 98.9 2.7E-09 9.2E-14 117.7 8.8 160 177-361 360-551 (598)
256 3ozx_A RNAse L inhibitor; ATP 98.9 1.6E-09 5.5E-14 117.6 6.8 142 195-358 292-444 (538)
257 1yrb_A ATP(GTP)binding protein 98.9 3E-09 1E-13 104.4 7.4 75 287-367 110-188 (262)
258 1yqt_A RNAse L inhibitor; ATP- 98.8 3.9E-09 1.3E-13 114.7 8.1 170 177-361 27-219 (538)
259 2bbs_A Cystic fibrosis transme 98.8 1.2E-09 4E-14 109.5 3.2 152 186-358 51-217 (290)
260 3bk7_A ABC transporter ATP-bin 98.8 5.5E-09 1.9E-13 115.0 8.4 143 189-358 372-530 (607)
261 3bk7_A ABC transporter ATP-bin 98.8 6.4E-09 2.2E-13 114.4 7.6 171 176-361 96-289 (607)
262 3ozx_A RNAse L inhibitor; ATP 98.8 2.6E-09 8.8E-14 116.0 4.1 71 280-361 118-198 (538)
263 1yqt_A RNAse L inhibitor; ATP- 98.7 9.1E-09 3.1E-13 111.9 7.7 143 189-358 302-460 (538)
264 3j16_B RLI1P; ribosome recycli 98.7 6E-09 2E-13 114.5 6.1 147 188-358 362-526 (608)
265 2wsm_A Hydrogenase expression/ 98.7 6.6E-09 2.3E-13 99.1 5.5 92 287-403 110-203 (221)
266 3j16_B RLI1P; ribosome recycli 98.7 1.4E-08 4.9E-13 111.5 7.9 71 281-361 202-282 (608)
267 2ohf_A Protein OLA1, GTP-bindi 98.7 8.9E-09 3.1E-13 107.0 5.6 108 195-332 20-128 (396)
268 3szr_A Interferon-induced GTP- 98.7 7.1E-09 2.4E-13 114.4 3.3 72 287-365 148-229 (608)
269 2iw3_A Elongation factor 3A; a 98.7 1.4E-08 4.8E-13 116.2 5.7 173 155-360 403-605 (986)
270 2lv7_A Calcium-binding protein 98.7 5.7E-08 2E-12 81.2 8.0 70 8-77 27-98 (100)
271 4f4c_A Multidrug resistance pr 98.6 5.2E-08 1.8E-12 116.5 10.3 173 176-363 420-616 (1321)
272 2pmy_A RAS and EF-hand domain- 98.6 5E-08 1.7E-12 79.8 7.1 69 10-78 20-88 (91)
273 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 2.5E-08 8.5E-13 103.8 6.2 109 195-332 18-127 (392)
274 3g5u_A MCG1178, multidrug resi 98.6 2.3E-08 7.8E-13 119.2 6.6 169 177-360 393-585 (1284)
275 4f4c_A Multidrug resistance pr 98.6 3.2E-08 1.1E-12 118.2 7.4 175 177-363 1082-1279(1321)
276 2opo_A Polcalcin CHE A 3; calc 98.6 1.3E-07 4.5E-12 75.9 8.6 69 10-78 4-73 (86)
277 3g5u_A MCG1178, multidrug resi 98.6 4.2E-08 1.4E-12 117.0 7.6 172 178-362 1037-1232(1284)
278 2ktg_A Calmodulin, putative; e 98.6 1.6E-07 5.3E-12 75.2 8.3 71 9-79 6-78 (85)
279 2joj_A Centrin protein; N-term 98.5 1.5E-07 5.1E-12 73.8 7.0 68 11-78 1-70 (77)
280 3ux8_A Excinuclease ABC, A sub 98.5 5.9E-08 2E-12 108.5 6.4 59 293-361 199-265 (670)
281 1rj9_A FTSY, signal recognitio 98.5 1.6E-07 5.6E-12 94.5 9.0 67 287-364 186-261 (304)
282 1avs_A Troponin C; muscle cont 98.5 3E-07 1E-11 74.6 8.8 70 10-79 13-84 (90)
283 4gp7_A Metallophosphoesterase; 98.5 2.5E-08 8.5E-13 91.8 1.7 66 287-359 74-158 (171)
284 1puj_A YLQF, conserved hypothe 98.5 8E-08 2.8E-12 95.8 5.0 37 198-236 121-157 (282)
285 1yx7_A Calsensin, LAN3-6 antig 98.5 6.7E-08 2.3E-12 77.0 3.1 71 11-81 1-79 (83)
286 2kn2_A Calmodulin; S MAPK phos 98.4 6.3E-07 2.2E-11 72.8 8.5 69 11-79 3-73 (92)
287 2yhs_A FTSY, cell division pro 98.4 2.7E-07 9.2E-12 98.1 7.2 33 190-222 284-318 (503)
288 3dm5_A SRP54, signal recogniti 98.4 2.1E-06 7.3E-11 90.3 13.3 72 286-366 183-255 (443)
289 3ux8_A Excinuclease ABC, A sub 98.4 8E-08 2.7E-12 107.4 1.5 57 293-359 540-605 (670)
290 1j7q_A CAVP, calcium vector pr 98.3 1.4E-06 4.7E-11 69.9 8.4 70 8-78 5-79 (86)
291 1f5n_A Interferon-induced guan 98.3 5.8E-07 2E-11 98.0 7.9 24 199-222 40-63 (592)
292 2iw3_A Elongation factor 3A; a 98.3 2.6E-07 8.8E-12 105.8 4.8 47 177-223 677-725 (986)
293 3cnl_A YLQF, putative uncharac 98.3 3.3E-07 1.1E-11 90.4 4.6 36 198-235 100-135 (262)
294 3e70_C DPA, signal recognition 98.3 4.9E-07 1.7E-11 92.0 5.5 70 287-364 213-282 (328)
295 3b9q_A Chloroplast SRP recepto 98.3 7.8E-07 2.7E-11 89.5 6.8 25 198-222 101-125 (302)
296 1tiz_A Calmodulin-related prot 98.3 2.1E-06 7.3E-11 64.9 7.7 60 19-78 3-64 (67)
297 1dtl_A Cardiac troponin C; hel 98.3 3.1E-06 1E-10 75.6 9.7 72 9-80 10-84 (161)
298 2b1u_A Calmodulin-like protein 98.3 6.9E-07 2.4E-11 68.6 4.5 63 15-77 4-68 (71)
299 2kz2_A Calmodulin, CAM; TR2C, 98.2 2.6E-06 8.8E-11 70.0 8.1 65 14-78 26-92 (94)
300 2og2_A Putative signal recogni 98.2 1.9E-06 6.3E-11 88.6 8.4 67 287-364 242-317 (359)
301 2jnf_A Troponin C; stretch act 98.2 3.9E-06 1.3E-10 74.7 9.6 75 6-80 2-79 (158)
302 3fwb_A Cell division control p 98.2 4.7E-06 1.6E-10 74.3 9.8 74 7-80 13-88 (161)
303 1c7v_A CAVP, calcium vector pr 98.2 8.7E-07 3E-11 70.1 4.3 65 13-78 5-72 (81)
304 2hf9_A Probable hydrogenase ni 98.2 3.4E-06 1.2E-10 80.3 9.2 25 198-222 39-63 (226)
305 2d58_A Allograft inflammatory 98.2 3.9E-06 1.3E-10 70.4 8.4 66 13-78 28-95 (107)
306 4ds7_A Calmodulin, CAM; protei 98.2 3.5E-06 1.2E-10 73.8 8.5 71 10-80 4-76 (147)
307 1k2h_A S100A1, S-100 protein, 98.2 6E-06 2E-10 67.1 9.3 73 13-85 5-86 (93)
308 1k9u_A Polcalcin PHL P 7; poll 98.2 2.1E-06 7.1E-11 67.4 6.2 63 17-79 3-66 (78)
309 3ox6_A Calcium-binding protein 98.2 2.6E-06 9.1E-11 75.0 7.6 71 10-80 4-76 (153)
310 3qrx_A Centrin; calcium-bindin 98.2 4.6E-06 1.6E-10 75.2 9.1 73 8-80 19-93 (169)
311 3kl4_A SRP54, signal recogniti 98.2 1.1E-05 3.7E-10 84.9 13.0 97 286-403 180-279 (433)
312 2bl0_C Myosin regulatory light 98.2 3.2E-06 1.1E-10 73.9 7.4 68 12-79 1-70 (142)
313 3mse_B Calcium-dependent prote 98.2 3.7E-06 1.3E-10 77.3 8.1 67 12-78 34-100 (180)
314 3li6_A Calcium-binding protein 98.2 2.2E-06 7.4E-11 64.8 5.3 59 20-78 3-63 (66)
315 3nso_A Protein S100-A3; EF-han 98.2 5.6E-06 1.9E-10 69.1 8.1 72 14-85 7-87 (101)
316 1s6j_A CDPK, calcium-dependent 98.2 5.4E-07 1.9E-11 72.3 1.9 67 10-76 16-84 (87)
317 3n22_A Protein S100-A2; EF-han 98.1 1.1E-05 3.6E-10 67.0 9.4 72 14-85 8-88 (98)
318 2lnk_A Protein S100-A4; EF-han 98.1 6.2E-06 2.1E-10 70.3 7.9 78 8-85 13-99 (113)
319 1qls_A S100C protein, calgizza 98.1 7.9E-06 2.7E-10 67.2 8.2 68 15-82 11-87 (99)
320 2f2o_A Calmodulin fused with c 98.1 7.5E-06 2.6E-10 74.6 8.9 71 10-80 4-76 (179)
321 1qv0_A Obelin, OBL; photoprote 98.1 1.1E-05 3.7E-10 74.5 10.0 71 11-81 14-96 (195)
322 3rm1_A Protein S100-B; alpha-h 98.1 1.7E-05 5.8E-10 64.8 9.6 71 14-85 6-86 (92)
323 4eto_A Protein S100-A4; calciu 98.1 1.4E-05 4.8E-10 65.6 9.1 71 14-84 7-86 (93)
324 2aao_A CDPK, calcium-dependent 98.1 9.6E-06 3.3E-10 72.8 8.9 69 10-78 20-90 (166)
325 3zwh_A Protein S100-A4; Ca-bin 98.1 1.5E-05 5.3E-10 66.8 9.4 72 14-85 10-90 (104)
326 1exr_A Calmodulin; high resolu 98.1 9.9E-06 3.4E-10 71.6 8.7 70 10-79 3-74 (148)
327 1pva_A Parvalbumin; calcium bi 98.1 5.2E-06 1.8E-10 69.6 6.5 68 11-78 36-108 (110)
328 1top_A Troponin C; contractIle 98.1 7E-06 2.4E-10 73.2 7.5 71 10-80 13-85 (162)
329 1rro_A RAT oncomodulin; calciu 98.0 2.7E-06 9.3E-11 71.2 4.2 66 12-77 36-106 (108)
330 5pal_A Parvalbumin; calcium-bi 98.0 6.2E-06 2.1E-10 69.0 6.4 66 13-78 37-107 (109)
331 1xk4_A Calgranulin A; S100 fam 98.0 6.7E-06 2.3E-10 67.2 6.3 70 14-83 7-81 (93)
332 1k8u_A S100A6, calcyclin, CACY 98.0 8.4E-06 2.9E-10 65.6 6.5 70 14-83 7-83 (90)
333 1j8m_F SRP54, signal recogniti 98.0 2.7E-05 9.3E-10 78.0 11.7 70 287-365 182-254 (297)
334 1s6i_A CDPK, calcium-dependent 98.0 3.6E-06 1.2E-10 78.2 4.9 68 10-77 3-72 (188)
335 1q80_A SCP, sarcoplasmic calci 98.0 1.7E-05 6E-10 71.6 9.3 67 15-81 92-158 (174)
336 2kax_A Protein S100-A5; EF-han 98.0 6.4E-06 2.2E-10 67.3 5.8 73 13-85 6-84 (92)
337 1qx2_A Vitamin D-dependent cal 98.0 4.7E-06 1.6E-10 64.7 4.7 64 16-79 4-73 (76)
338 3pih_A Uvrabc system protein A 98.0 1E-05 3.5E-10 92.4 9.4 58 293-360 802-868 (916)
339 3fs7_A Parvalbumin, thymic; ca 98.0 6.5E-06 2.2E-10 68.9 5.8 66 13-78 38-108 (109)
340 3h4s_E KCBP interacting Ca2+-b 98.0 1.6E-05 5.5E-10 69.7 8.5 66 15-80 38-106 (135)
341 1wlz_A DJBP, CAP-binding prote 98.0 1.4E-05 4.6E-10 66.5 7.6 64 15-78 22-87 (105)
342 2jjz_A Ionized calcium-binding 98.0 2E-05 7E-10 70.4 9.2 66 13-78 46-113 (150)
343 2pvb_A Protein (parvalbumin); 98.0 7.6E-06 2.6E-10 68.3 6.0 66 13-78 37-107 (108)
344 2pt7_A CAG-ALFA; ATPase, prote 98.0 9.5E-06 3.3E-10 82.6 7.6 115 188-361 160-276 (330)
345 1rwy_A Parvalbumin alpha; EF-h 98.0 9.5E-06 3.2E-10 67.8 6.3 66 13-78 37-107 (109)
346 1wy9_A Allograft inflammatory 98.0 1.8E-05 6.2E-10 70.5 8.5 66 13-78 44-111 (147)
347 1nya_A Calerythrin; EF-hand, m 98.0 1.5E-05 5.3E-10 72.0 8.2 70 11-80 1-87 (176)
348 2mys_C Myosin; muscle protein, 98.0 2.3E-05 7.8E-10 68.7 9.1 70 10-80 1-75 (149)
349 2ccm_A Calexcitin; EF hand, ca 98.0 3.7E-05 1.3E-09 70.8 10.9 69 12-80 104-172 (191)
350 3b85_A Phosphate starvation-in 98.0 1.7E-06 5.7E-11 82.3 1.7 55 299-364 108-162 (208)
351 2obh_A Centrin-2; DNA repair c 98.0 1.3E-05 4.6E-10 70.5 7.5 68 12-79 1-70 (143)
352 3u0k_A Rcamp; fluorescent prot 98.0 1.6E-05 5.3E-10 82.4 8.9 69 9-77 294-364 (440)
353 1bu3_A Calcium-binding protein 98.0 7.6E-06 2.6E-10 68.5 5.5 65 13-77 38-107 (109)
354 1xk4_C Calgranulin B; S100 fam 98.0 3.2E-05 1.1E-09 65.8 9.3 69 13-81 8-86 (113)
355 1uhk_A Aequorin 2, aequorin; E 98.0 1.9E-05 6.6E-10 72.4 8.6 73 8-80 7-91 (191)
356 1cb1_A Calbindin D9K; calcium- 98.0 3.3E-06 1.1E-10 66.0 2.8 66 14-79 4-75 (78)
357 2lmt_A Calmodulin-related prot 97.9 8.1E-06 2.8E-10 72.5 5.7 69 10-78 3-73 (148)
358 3q5d_A Atlastin-1; G protein, 97.9 2.8E-05 9.6E-10 82.0 10.5 22 199-220 69-90 (447)
359 3akb_A Putative calcium bindin 97.9 2.8E-05 9.4E-10 69.5 9.0 63 16-78 97-159 (166)
360 2npi_A Protein CLP1; CLP1-PCF1 97.9 4.4E-06 1.5E-10 88.8 4.1 27 196-222 137-163 (460)
361 2y5i_A S100Z, S100 calcium bin 97.9 2.4E-05 8.2E-10 64.9 7.8 69 13-81 6-83 (99)
362 3k21_A PFCDPK3, calcium-depend 97.9 1.4E-05 4.7E-10 74.3 7.1 66 11-77 46-113 (191)
363 3sjs_A URE3-BP sequence specif 97.9 1.5E-05 5.2E-10 76.0 7.2 71 10-80 44-116 (220)
364 1ye8_A Protein THEP1, hypothet 97.9 1.3E-05 4.3E-10 74.2 6.4 23 199-221 2-24 (178)
365 2wcb_A Protein S100-A12; calci 97.9 9.3E-06 3.2E-10 66.9 4.9 73 12-84 7-88 (95)
366 2lhi_A Calmodulin, serine/thre 97.9 1E-05 3.5E-10 74.4 5.8 68 10-77 4-73 (176)
367 2obh_A Centrin-2; DNA repair c 97.9 4.2E-05 1.5E-09 67.2 9.4 62 16-77 78-141 (143)
368 4drw_A Protein S100-A10/annexi 97.9 2.7E-05 9.1E-10 67.2 7.7 72 13-85 11-89 (121)
369 2bl0_B Myosin regulatory light 97.9 1.5E-05 5.2E-10 69.5 6.3 66 13-78 72-139 (145)
370 3qrx_A Centrin; calcium-bindin 97.9 4.2E-05 1.4E-09 68.7 9.4 63 16-78 100-164 (169)
371 1top_A Troponin C; contractIle 97.9 4.3E-05 1.5E-09 68.0 9.3 64 15-78 94-159 (162)
372 2sas_A Sarcoplasmic calcium-bi 97.9 1.6E-05 5.6E-10 72.4 6.7 67 15-81 103-169 (185)
373 1j55_A S-100P protein; metal b 97.9 2.6E-05 8.8E-10 64.2 7.2 70 13-82 5-83 (95)
374 3pm8_A PFCDPK2, calcium-depend 97.9 9.2E-06 3.1E-10 76.0 5.0 68 11-78 51-120 (197)
375 1exr_A Calmodulin; high resolu 97.9 4.9E-05 1.7E-09 67.0 9.5 62 17-78 83-146 (148)
376 4aby_A DNA repair protein RECN 97.9 1.5E-05 5.1E-10 83.4 7.1 34 188-221 50-84 (415)
377 2lmt_A Calmodulin-related prot 97.9 2.1E-05 7.1E-10 69.8 6.9 61 17-77 83-145 (148)
378 3ll8_B Calcineurin subunit B t 97.9 1.2E-05 4.2E-10 71.0 5.2 65 12-78 1-65 (155)
379 3nxa_A Protein S100-A16; S100 97.9 5.8E-05 2E-09 62.8 8.9 69 14-82 8-86 (100)
380 2mys_C Myosin; muscle protein, 97.8 3E-05 1E-09 67.9 7.6 65 13-78 81-147 (149)
381 2ccm_A Calexcitin; EF hand, ca 97.8 3.5E-05 1.2E-09 71.0 7.9 71 10-80 5-93 (191)
382 2hpk_A Photoprotein berovin; s 97.8 3.9E-05 1.3E-09 71.9 8.3 64 17-80 128-191 (208)
383 3qf7_A RAD50; ABC-ATPase, ATPa 97.8 3.1E-05 1.1E-09 79.9 8.0 57 293-359 276-344 (365)
384 3j04_B Myosin regulatory light 97.8 2.3E-05 8E-10 68.3 6.0 63 16-78 75-139 (143)
385 2sas_A Sarcoplasmic calcium-bi 97.8 4.7E-05 1.6E-09 69.2 8.2 71 11-81 2-90 (185)
386 1nya_A Calerythrin; EF-hand, m 97.8 3.9E-05 1.3E-09 69.3 7.5 63 16-78 101-163 (176)
387 3ox6_A Calcium-binding protein 97.8 4.9E-05 1.7E-09 66.7 8.0 62 16-77 87-151 (153)
388 2mys_B Myosin; muscle protein, 97.8 4.5E-05 1.5E-09 68.5 7.8 63 16-78 94-158 (166)
389 2bec_A Calcineurin B homologou 97.8 1.5E-05 5.2E-10 74.4 4.8 68 10-79 22-89 (202)
390 1w7j_B Myosin light chain 1; m 97.8 7E-06 2.4E-10 72.5 2.3 71 10-80 3-77 (151)
391 2znd_A Programmed cell death p 97.8 3E-05 1E-09 70.2 6.6 67 14-80 4-73 (172)
392 2ovk_C Myosin catalytic light 97.8 4.5E-05 1.5E-09 68.0 7.6 63 16-78 84-150 (159)
393 1dtl_A Cardiac troponin C; hel 97.8 2E-05 6.8E-10 70.2 5.1 64 15-78 93-158 (161)
394 3i5g_B Myosin regulatory light 97.8 9.2E-05 3.2E-09 66.3 9.5 80 8-92 7-121 (153)
395 1wdc_C Scallop myosin; calcium 97.8 2.1E-05 7.2E-10 69.8 5.1 70 10-80 2-75 (156)
396 2h2k_A Protein S100-A13; calci 97.8 3.1E-05 1.1E-09 65.2 5.7 67 14-80 19-91 (106)
397 3khe_A Calmodulin-like domain 97.7 1.9E-05 6.5E-10 72.6 4.7 67 11-77 34-113 (191)
398 1m45_A MLC1P, myosin light cha 97.7 3.7E-05 1.3E-09 67.5 6.3 63 16-78 82-146 (148)
399 3fwb_A Cell division control p 97.7 6.3E-05 2.2E-09 66.8 7.8 63 16-78 95-159 (161)
400 4ds7_A Calmodulin, CAM; protei 97.7 6.1E-05 2.1E-09 65.7 7.6 62 15-77 82-145 (147)
401 1alv_A Calpain, S-camld; calci 97.7 7.2E-05 2.5E-09 67.8 8.3 66 14-80 1-76 (173)
402 1zu4_A FTSY; GTPase, signal re 97.7 6.9E-05 2.4E-09 75.8 8.6 31 191-221 97-129 (320)
403 2f2o_A Calmodulin fused with c 97.7 6.6E-05 2.3E-09 68.2 7.7 62 16-77 83-146 (179)
404 3i5g_C Myosin catalytic light 97.7 7.2E-05 2.5E-09 67.5 7.8 61 17-77 85-149 (159)
405 3e3r_A Calcyphosin, calcyphosi 97.7 5.4E-05 1.8E-09 70.4 6.9 66 12-77 32-99 (204)
406 2aao_A CDPK, calcium-dependent 97.7 2.5E-05 8.6E-10 70.0 4.5 62 17-78 99-160 (166)
407 3khe_A Calmodulin-like domain 97.7 5.5E-05 1.9E-09 69.4 6.9 64 17-80 123-186 (191)
408 1wdc_C Scallop myosin; calcium 97.7 5E-05 1.7E-09 67.3 6.4 64 15-78 82-149 (156)
409 2bec_A Calcineurin B homologou 97.7 4.9E-05 1.7E-09 70.8 6.6 67 12-78 109-182 (202)
410 2jnf_A Troponin C; stretch act 97.7 4.5E-05 1.5E-09 67.7 6.0 62 16-77 90-153 (158)
411 2bl0_C Myosin regulatory light 97.7 4.4E-05 1.5E-09 66.5 5.8 61 16-77 78-140 (142)
412 2r6f_A Excinuclease ABC subuni 97.7 1.8E-05 6.2E-10 90.1 4.1 67 283-359 827-907 (972)
413 2mys_B Myosin; muscle protein, 97.7 0.00012 4.2E-09 65.6 8.8 67 9-79 17-86 (166)
414 2znd_A Programmed cell death p 97.7 0.00013 4.6E-09 65.9 9.1 64 17-80 74-139 (172)
415 1z6g_A Guanylate kinase; struc 97.7 1.6E-05 5.4E-10 75.9 3.0 37 185-221 9-47 (218)
416 2lhi_A Calmodulin, serine/thre 97.7 7.4E-05 2.5E-09 68.6 7.4 62 15-77 82-145 (176)
417 1y1x_A Leishmania major homolo 97.7 0.00015 5E-09 67.2 9.4 64 17-80 93-158 (191)
418 2ygr_A Uvrabc system protein A 97.7 2E-05 7E-10 90.0 4.1 57 293-359 860-925 (993)
419 1ggw_A Protein (CDC4P); light 97.7 5E-05 1.7E-09 66.0 5.8 65 13-78 72-138 (140)
420 2hpk_A Photoprotein berovin; s 97.7 2.5E-05 8.4E-10 73.3 4.0 72 8-79 27-109 (208)
421 1w7j_B Myosin light chain 1; m 97.6 2.6E-05 8.9E-10 68.7 3.8 62 15-77 85-148 (151)
422 3a4u_B Multiple coagulation fa 97.6 3.8E-05 1.3E-09 68.1 4.8 62 16-77 67-142 (143)
423 1snl_A Nucleobindin 1, calnuc; 97.6 4.4E-05 1.5E-09 63.5 4.8 59 19-77 22-98 (103)
424 2ovk_B RLC, myosin regulatory 97.6 8.1E-05 2.8E-09 65.8 6.8 62 16-78 84-147 (153)
425 1wdc_B Scallop myosin; calcium 97.6 9.2E-05 3.1E-09 65.7 7.1 62 16-78 86-149 (156)
426 1u0l_A Probable GTPase ENGC; p 97.6 4.8E-05 1.7E-09 76.3 5.8 83 315-403 79-162 (301)
427 1juo_A Sorcin; calcium-binding 97.6 3.1E-05 1.1E-09 72.1 4.0 69 11-80 27-102 (198)
428 3i5g_B Myosin regulatory light 97.6 6.5E-05 2.2E-09 67.3 6.0 62 16-78 84-147 (153)
429 3ll8_B Calcineurin subunit B t 97.6 0.00012 4.2E-09 64.4 7.7 67 14-80 72-145 (155)
430 3k21_A PFCDPK3, calcium-depend 97.6 0.00012 4E-09 67.9 7.7 64 16-79 121-191 (191)
431 1psr_A Psoriasin, S100A7; EF-h 97.6 7.5E-05 2.6E-09 62.0 5.7 72 13-85 6-86 (100)
432 1t9h_A YLOQ, probable GTPase E 97.6 1.9E-05 6.5E-10 79.3 2.4 27 196-222 172-198 (307)
433 2vf7_A UVRA2, excinuclease ABC 97.6 1.3E-05 4.6E-10 90.7 1.3 57 293-359 727-792 (842)
434 3mse_B Calcium-dependent prote 97.6 8.6E-05 2.9E-09 68.0 6.5 62 17-78 108-177 (180)
435 2bl0_B Myosin regulatory light 97.6 9.6E-05 3.3E-09 64.3 6.6 63 10-78 1-65 (145)
436 1htw_A HI0065; nucleotide-bind 97.6 2E-05 7E-10 71.3 2.2 34 188-221 22-57 (158)
437 1znw_A Guanylate kinase, GMP k 97.6 3.1E-05 1.1E-09 73.0 3.5 35 187-221 10-44 (207)
438 2rcn_A Probable GTPase ENGC; Y 97.6 6.1E-05 2.1E-09 77.2 5.7 34 189-222 206-240 (358)
439 1a4p_A S100A10; S100 family, E 97.6 0.00012 4E-09 60.3 6.4 68 13-81 5-79 (96)
440 1uhk_A Aequorin 2, aequorin; E 97.6 0.00013 4.6E-09 66.7 7.5 60 20-79 112-173 (191)
441 3dtp_E RLC, myosin regulatory 97.6 6.2E-05 2.1E-09 70.1 5.3 62 16-78 125-188 (196)
442 1qv0_A Obelin, OBL; photoprote 97.6 0.00011 3.9E-09 67.5 7.0 60 21-80 117-178 (195)
443 3pm8_A PFCDPK2, calcium-depend 97.6 5.9E-05 2E-09 70.4 5.1 63 16-78 128-194 (197)
444 3j04_B Myosin regulatory light 97.5 0.00013 4.4E-09 63.5 6.8 65 11-79 1-67 (143)
445 1y1x_A Leishmania major homolo 97.5 0.0002 6.8E-09 66.2 8.4 65 16-80 26-92 (191)
446 3a8r_A Putative uncharacterize 97.5 9.4E-05 3.2E-09 68.1 6.1 64 15-78 96-169 (179)
447 2kyc_A Parvalbumin-3, parvalbu 97.5 4.5E-06 1.5E-10 69.8 -2.9 65 14-78 38-107 (108)
448 1jfj_A Ehcabp, calcium-binding 97.5 0.0001 3.5E-09 62.9 5.6 60 19-78 2-63 (134)
449 3sg6_A Gcamp2, myosin light ch 97.5 0.00018 6.3E-09 75.7 8.6 69 10-78 305-375 (450)
450 1jba_A GCAP-2, protein (guanyl 97.5 0.00024 8.1E-09 66.2 8.3 70 11-80 16-88 (204)
451 3q5i_A Protein kinase; CDPK, m 97.5 0.00015 5.3E-09 77.7 7.7 68 11-78 349-426 (504)
452 2ovk_C Myosin catalytic light 97.5 6.7E-05 2.3E-09 66.8 4.0 69 10-79 2-74 (159)
453 2yv5_A YJEQ protein; hydrolase 97.5 0.00013 4.5E-09 73.1 6.5 81 315-403 74-158 (302)
454 2qac_A Myosin A tail domain in 97.5 0.00022 7.5E-09 62.4 7.3 60 16-77 83-144 (146)
455 1vma_A Cell division protein F 97.5 0.00027 9.1E-09 71.0 8.8 24 198-221 105-128 (306)
456 3sjs_A URE3-BP sequence specif 97.5 0.00023 8E-09 67.6 7.9 65 17-82 117-183 (220)
457 2lvv_A Flagellar calcium-bindi 97.5 0.0002 6.7E-09 68.4 7.4 72 17-88 133-207 (226)
458 1tf7_A KAIC; homohexamer, hexa 97.5 6.4E-05 2.2E-09 81.4 4.4 131 193-360 277-417 (525)
459 1m45_A MLC1P, myosin light cha 97.4 2.7E-05 9.4E-10 68.3 1.1 65 16-80 3-70 (148)
460 1wdc_B Scallop myosin; calcium 97.4 0.00036 1.2E-08 61.7 8.5 67 9-79 10-78 (156)
461 2ct9_A Calcium-binding protein 97.4 0.00018 6.2E-09 67.3 6.8 63 15-77 111-180 (208)
462 1s6i_A CDPK, calcium-dependent 97.4 3.5E-05 1.2E-09 71.4 1.6 61 18-78 83-143 (188)
463 1gjy_A Sorcin, CP-22, V19; cal 97.4 0.00036 1.2E-08 62.7 8.3 59 22-80 6-71 (167)
464 2lvv_A Flagellar calcium-bindi 97.4 0.00018 6.1E-09 68.7 6.4 71 10-80 44-126 (226)
465 2l2e_A Calcium-binding protein 97.4 0.00051 1.7E-08 62.9 9.2 63 16-78 98-174 (190)
466 2ehb_A Calcineurin B-like prot 97.4 0.00029 9.9E-09 65.7 7.5 70 10-79 30-102 (207)
467 1jfj_A Ehcabp, calcium-binding 97.4 0.00019 6.6E-09 61.2 5.8 55 19-75 77-131 (134)
468 2px0_A Flagellar biosynthesis 97.4 0.00048 1.7E-08 68.8 9.2 24 198-221 106-129 (296)
469 3dtp_E RLC, myosin regulatory 97.4 0.00043 1.5E-08 64.3 8.2 68 8-79 48-117 (196)
470 2jeo_A Uridine-cytidine kinase 97.4 8.4E-05 2.9E-09 72.0 3.4 35 187-221 13-49 (245)
471 3jvv_A Twitching mobility prot 97.3 0.0011 3.9E-08 67.8 12.0 46 313-363 189-234 (356)
472 3akb_A Putative calcium bindin 97.3 0.00033 1.1E-08 62.3 6.9 66 15-80 2-84 (166)
473 2zfd_A Calcineurin B-like prot 97.3 0.00044 1.5E-08 65.7 8.2 70 10-79 41-113 (226)
474 3mwu_A Calmodulin-domain prote 97.3 0.00039 1.3E-08 74.1 8.7 67 11-77 325-407 (486)
475 2v9p_A Replication protein E1; 97.3 5.4E-05 1.8E-09 75.9 1.7 35 187-221 114-150 (305)
476 2ffh_A Protein (FFH); SRP54, s 97.3 0.00036 1.2E-08 73.2 7.9 71 286-364 181-251 (425)
477 1cip_A Protein (guanine nucleo 97.3 0.00036 1.2E-08 71.5 7.7 106 287-403 194-333 (353)
478 1u0l_A Probable GTPase ENGC; p 97.3 0.0002 6.7E-09 71.8 5.6 26 197-222 169-194 (301)
479 1dgu_A Calcium-saturated CIB; 97.3 0.00034 1.2E-08 63.8 6.8 70 9-80 12-90 (183)
480 2f33_A Calbindin; EF-hand, Ca2 97.3 0.00013 4.4E-09 70.5 4.0 68 10-77 9-84 (263)
481 3lij_A Calcium/calmodulin depe 97.3 0.00021 7.1E-09 76.5 6.0 68 11-78 340-417 (494)
482 1jba_A GCAP-2, protein (guanyl 97.3 0.00038 1.3E-08 64.8 7.0 62 17-78 95-175 (204)
483 1fpw_A Yeast frequenin, calciu 97.3 0.00038 1.3E-08 63.7 6.8 62 17-78 99-174 (190)
484 2yv5_A YJEQ protein; hydrolase 97.3 0.00039 1.3E-08 69.6 7.4 25 197-222 165-189 (302)
485 3nyv_A Calmodulin-domain prote 97.3 0.00044 1.5E-08 73.6 8.2 62 17-78 418-479 (484)
486 2ovk_B RLC, myosin regulatory 97.3 0.00037 1.3E-08 61.4 6.4 66 8-77 7-74 (153)
487 1s6c_A KV4 potassium channel-i 97.3 0.00042 1.4E-08 63.1 6.8 62 16-77 91-166 (183)
488 1g8i_A Frequenin, neuronal cal 97.3 0.00044 1.5E-08 63.3 7.0 64 16-79 98-175 (190)
489 2ct9_A Calcium-binding protein 97.3 0.00011 3.7E-09 68.9 2.9 68 10-79 22-89 (208)
490 3i5g_C Myosin catalytic light 97.3 0.00016 5.6E-09 65.1 3.9 68 10-78 2-73 (159)
491 2ggz_A Guanylyl cyclase-activa 97.2 0.00062 2.1E-08 63.9 8.1 63 16-78 92-162 (211)
492 1alv_A Calpain, S-camld; calci 97.2 0.00064 2.2E-08 61.4 7.9 63 17-80 77-141 (173)
493 3e3r_A Calcyphosin, calcyphosi 97.2 0.00049 1.7E-08 63.8 7.2 72 11-82 103-184 (204)
494 3ec2_A DNA replication protein 97.2 0.0001 3.5E-09 67.6 2.5 25 197-221 38-62 (180)
495 3ney_A 55 kDa erythrocyte memb 97.2 0.00017 5.9E-09 67.5 4.0 47 188-235 10-56 (197)
496 2i7a_A Calpain 13; calcium-dep 97.2 0.00051 1.7E-08 62.9 7.1 61 17-79 76-142 (174)
497 1k94_A Grancalcin; penta-EF-ha 97.2 0.00043 1.5E-08 62.0 6.5 59 22-80 4-69 (165)
498 3u0k_A Rcamp; fluorescent prot 97.2 0.00048 1.6E-08 71.4 7.5 61 17-77 375-437 (440)
499 3cs1_A Flagellar calcium-bindi 97.2 0.0004 1.4E-08 65.8 6.5 68 16-83 129-199 (219)
500 1zcb_A G alpha I/13; GTP-bindi 97.2 0.00047 1.6E-08 70.9 7.3 66 287-363 202-281 (362)
No 1
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=100.00 E-value=9.9e-52 Score=451.42 Aligned_cols=398 Identities=52% Similarity=0.914 Sum_probs=317.0
Q ss_pred ccccccccccccccchhhHHHHHHHHHHHHHhhccCceeeEEeCCcccCcccccccccCceEEEEcCCCCChHHHHHHHH
Q 009050 139 PSANWFSSKSSKKISMSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLL 218 (545)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~id~l~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Ll 218 (545)
.|.+|..+-+.++++.+.+..+++.|+++|++++.|++..+.|..++.+.+.+..+...++|+|+|.+|||||||+|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~y~~~i~~le~~~~~~~~~~~~l~~~~~~~~~~V~vvG~~n~GKSTLIN~Ll 86 (550)
T 2qpt_A 7 SMFSWLKKGGARGQRPEAIRTVTSSLKELYRTKLLPLEEHYRFGSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLL 86 (550)
T ss_dssp -------------------CCHHHHHHHHHHHHTHHHHHHTTGGGTTCCCCCSTTTSSCCEEEEEEBTTSCHHHHHHHHH
T ss_pred hhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhHHHHhccccccchhcccccccCCcEEEEECCCCCCHHHHHHHHh
Confidence 47778765323334557788889999999999999999988888888778888888888899999999999999999999
Q ss_pred cccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCC
Q 009050 219 RTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLS 298 (545)
Q Consensus 219 g~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~s 298 (545)
|..+++.+++..|+|++...+.++......+|.++......++.++..+|..|..++.+...+.+++.++.||||||+.+
T Consensus 87 g~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~ 166 (550)
T 2qpt_A 87 EQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILS 166 (550)
T ss_dssp TSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEEEECCCHHHHHCEEEECCCBCC
T ss_pred CCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEeccccccCCEEEEECcCCCC
Confidence 99974447999999999888888877777788887666667777787778777777777788888888999999999998
Q ss_pred hhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHH
Q 009050 299 GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWS 378 (545)
Q Consensus 299 gekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~ 378 (545)
+..+++.+.++|..++.+++.++|++|+++|+++.++..++..+++.+...+.++++|+||+|+++.+++.++++.++|+
T Consensus 167 ~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l~~s 246 (550)
T 2qpt_A 167 GAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALMWA 246 (550)
T ss_dssp -------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHhhcc
Confidence 77777888888888899999999999999999876677888899999988888999999999999988999999999999
Q ss_pred hcccccCCccEEEEeeccCCCccCcccCCCccHHhhHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 009050 379 LGKVLNTPEVVRVYIGSFNDKPVNESAFGPLGKELFEKEQDDLLSDLKDIPKKACDRR-INEFVKRARAAKIHAYIISHL 457 (545)
Q Consensus 379 l~k~~~~~~v~~v~iSa~~~~~~~~~~~~~~~~~~f~~e~e~ll~~l~~~~~~~~~~~-i~~~~~~~~~~~i~a~i~~~~ 457 (545)
++++++..++..++.+..+..+.. .+.....|..|.|+++..+ +++||++.++ |+++.++++.++|||.|++++
T Consensus 247 ~~~i~~vs~l~~~~~~~~~~~~~~----~~~~~~~~~~E~e~l~~~l-~elP~~~~v~~i~~~~~~~~~~~I~a~I~v~~ 321 (550)
T 2qpt_A 247 LGKVVGTPEVLRVYIGSFWSQPLL----VPDNRRLFELEEQDLFRDI-QGLPRHAALRKLNDLVKRARLVRVHAYIISYL 321 (550)
T ss_dssp HHHHHCCSSCCCEEESCCSSSCCS----SCTTHHHHHHHHHHHHHHH-HTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeechHhhhhccccCCCCccc----CCCCHHHHHHHHHHHHHHh-hhccHHHHHHHHHHHhccCCeEEEEEEEEEee
Confidence 998888887776777666654432 2355667888889999997 6777777777 899998888999999999999
Q ss_pred hhhchhhhchhhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHccCCCcccccCChhHHHHHHHHHhhchHHHh
Q 009050 458 RKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLL 537 (545)
Q Consensus 458 ~~~~~~~~gk~~~~~~~i~~l~~~~~~~~~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 537 (545)
++||+|+||++|++++++.+|..+|+++++.|++++||||+++.|+++|+.+||++||+|++++++.||++|++|||+||
T Consensus 322 ~sqk~i~iGk~g~~~~li~~l~~~~~~i~~~~~~~~~d~p~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~~~~~d~~~l~ 401 (550)
T 2qpt_A 322 KKEMPTVFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPDCQKMQELLMAHDFTKFHSLKPKLLEALDDMLAQDIAKLM 401 (550)
T ss_dssp HHHSCSSSCHHHHHHHHHHTHHHHHHHHHHTTCCCTTTCCCHHHHHHHHHHSCGGGSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeEECCchHHHHHHHhHHHHHHHHHHHhCCCccccCCHHHHHhhhhhCChhhccccCHHHHHHHHhhhHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcc
Q 009050 538 KNFR 541 (545)
Q Consensus 538 ~~~~ 541 (545)
.+++
T Consensus 402 ~~~~ 405 (550)
T 2qpt_A 402 PLLR 405 (550)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9886
No 2
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=1.2e-29 Score=258.31 Aligned_cols=231 Identities=20% Similarity=0.321 Sum_probs=172.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCccccc-ccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFG-TAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~-~~~~~~~~~ 277 (545)
+|+|+|.+|||||||+|+|+|..+ +++++.|.||+..+... ...+ .
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~--~i~s~~~~tT~~~~~~~-----------------------~~~~~~-------- 58 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKV--SIISPKAGTTRMRVLGV-----------------------KNIPNE-------- 58 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEE-----------------------EEETTT--------
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc--cccCCCCCceeeEEEEE-----------------------EecCCC--------
Confidence 999999999999999999999998 88899998887665311 1111 1
Q ss_pred hcCchhhccCceeecCCCCCChhh-hhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHH-HHHHhcCCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEK-QRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRV-ITSLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgek-q~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~-l~~L~~~~~~iii 355 (545)
.++.|+||||+..... ..+.+. +...+..++..+|++++++|++. ..+.....+ +..+...+.|+++
T Consensus 59 --------~~i~lvDTPG~~~~~~~~~l~~~--~~~~~~~~l~~aD~il~VvD~~~-~~~~~~~~~~~~~l~~~~~pvil 127 (308)
T 3iev_A 59 --------AQIIFLDTPGIYEPKKSDVLGHS--MVEIAKQSLEEADVILFMIDATE-GWRPRDEEIYQNFIKPLNKPVIV 127 (308)
T ss_dssp --------EEEEEEECCCCCCCCTTCHHHHH--HHHHHHHHHHHCSEEEEEEETTT-BSCHHHHHHHHHHTGGGCCCEEE
T ss_pred --------CeEEEEECcCCCccccchhHHHH--HHHHHHHHhhcCCEEEEEEeCCC-CCCchhHHHHHHHHHhcCCCEEE
Confidence 2789999999975320 111111 22356677899999999999987 345555555 7888887899999
Q ss_pred EecCCCCC-CHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc-----ccCCCccHHhhHH-------------
Q 009050 356 VLNKADQV-DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE-----SAFGPLGKELFEK------------- 416 (545)
Q Consensus 356 VlNK~D~~-~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~-----~~~~~~~~~~f~~------------- 416 (545)
|+||+|+. +.+.+.+....+...++ .+..+ +++||++|.|+++ ...++.+++.|+.
T Consensus 128 V~NK~Dl~~~~~~~~~~~~~l~~~~~---~~~~i--~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~ 202 (308)
T 3iev_A 128 VINKIDKIGPAKNVLPLIDEIHKKHP---ELTEI--VPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAA 202 (308)
T ss_dssp EEECGGGSSSGGGGHHHHHHHHHHCT---TCCCE--EECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHH
T ss_pred EEECccCCCCHHHHHHHHHHHHHhcc---CCCeE--EEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHH
Confidence 99999998 55555554444432222 23344 8999999999876 1223333333332
Q ss_pred --HHHHHHHHHhhchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhchhhhchhhhHHHHHHHH
Q 009050 417 --EQDDLLSDLKDIPKKACDRRINEFVKRA---RAAKIHAYIISHLRKEMPAMMGKAKTQQKLIDNL 478 (545)
Q Consensus 417 --e~e~ll~~l~~~~~~~~~~~i~~~~~~~---~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~l 478 (545)
-+|+++..+.+++||++.+.+++|.++. +.++|+|.|+|++++|++|+||++|++++.|+.-
T Consensus 203 e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ 269 (308)
T 3iev_A 203 EIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKR 269 (308)
T ss_dssp HHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEEEEEESSGGGHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEEEEEEEEccCCcceEEEcCCcHHHHHHHHH
Confidence 2477888899999999999999988765 6788999999999999999999999999999863
No 3
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=99.92 E-value=1.8e-25 Score=193.16 Aligned_cols=99 Identities=29% Similarity=0.361 Sum_probs=89.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q 009050 4 GTGPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (545)
Q Consensus 4 ~~~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~ 83 (545)
++...|.||++|+++|+++|+.+|+ ++|+|+|++++.+|++||||+++|++||+++|.|++|.|+++||++||+||.++
T Consensus 20 g~~~~W~it~ee~~~y~~iF~~lD~-~dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~~~ 98 (121)
T 3fia_A 20 GSLDTWAITVEERAKHDQQFHSLKP-ISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLK 98 (121)
T ss_dssp CCTTTSCCCHHHHHHHHHHHHHTCC-BTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CCCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCcccccccCCCCCCC
Q 009050 84 QDGHQVTHDLWNSDVDFQNLK 104 (545)
Q Consensus 84 ~~g~~~~~~l~~~~~~~~~l~ 104 (545)
++|.++|..|++ .+...++.
T Consensus 99 ~~G~~lP~~LP~-~l~~~~~~ 118 (121)
T 3fia_A 99 LQGYQLPSALPP-VMKQQPVA 118 (121)
T ss_dssp HTTCCCCSSCCG-GGC-----
T ss_pred HcCCCCCCCCCH-HHHcCCCc
Confidence 999999999988 55544443
No 4
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=6.3e-27 Score=237.30 Aligned_cols=226 Identities=23% Similarity=0.288 Sum_probs=163.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.+|+|+|.+|||||||+|+|+|..+ +++++.|+||+..+.. +...+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~--~ivs~~~~tTr~~i~~-----------------------i~~~~~-------- 54 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKV--APISPRPQTTRKRLRG-----------------------ILTEGR-------- 54 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEE-----------------------EEEETT--------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce--eeecCCCCceeEEEEE-----------------------EEEeCC--------
Confidence 3799999999999999999999998 8888888888765421 100011
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC--CCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH--DDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~--~~~iii 355 (545)
.++.|+||||+.... ..+.+. +...+..++..+|++|+++|+++ ..+.....+++.++.. +.|+++
T Consensus 55 --------~~l~l~DTpG~~~~~-~~l~~~--~~~~~~~~l~~ad~il~VvD~~~-~~~~~~~~i~~~l~~~~~~~p~il 122 (301)
T 1wf3_A 55 --------RQIVFVDTPGLHKPM-DALGEF--MDQEVYEALADVNAVVWVVDLRH-PPTPEDELVARALKPLVGKVPILL 122 (301)
T ss_dssp --------EEEEEEECCCCCCCC-SHHHHH--HHHHHHHHTSSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTTTSCEEE
T ss_pred --------cEEEEecCccccchh-hHHHHH--HHHHHHHHHhcCCEEEEEEECCC-CCChHHHHHHHHHHhhcCCCCEEE
Confidence 278999999997631 112211 23356677899999999999986 3556666666777766 789999
Q ss_pred EecCCCCCCHHH-HHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc-----ccCCCccHHhh---------------
Q 009050 356 VLNKADQVDTQQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE-----SAFGPLGKELF--------------- 414 (545)
Q Consensus 356 VlNK~D~~~~~~-l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~-----~~~~~~~~~~f--------------- 414 (545)
|+||+|+.+... +.+....+ ..+.. .+++||++|.|+++ ...++.++++|
T Consensus 123 V~NK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~ 193 (301)
T 1wf3_A 123 VGNKLDAAKYPEEAMKAYHEL-------LPEAE--PRMLSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWV 193 (301)
T ss_dssp EEECGGGCSSHHHHHHHHHHT-------STTSE--EEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHH
T ss_pred EEECcccCCchHHHHHHHHHh-------cCcCc--EEEEeCCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHH
Confidence 999999986544 33322221 23333 38999999988765 11222222211
Q ss_pred -HHHHHHHHHHHhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhchhhhchhhhHHHHHHH
Q 009050 415 -EKEQDDLLSDLKDIPKKACDRRINEFVKR-ARAAKIHAYIISHLRKEMPAMMGKAKTQQKLIDN 477 (545)
Q Consensus 415 -~~e~e~ll~~l~~~~~~~~~~~i~~~~~~-~~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~ 477 (545)
+.-+++++..+.+++||++.+.+++|.++ .+.++|+|.|+|++++|++|+||++|.++|.|+.
T Consensus 194 ~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~i~ve~~~~k~iiig~~g~~lk~i~~ 258 (301)
T 1wf3_A 194 AEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKAIVIGEGGRKIKEIGQ 258 (301)
T ss_dssp HHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEEEEEeeCCceEEEEeCCchHHHHHHH
Confidence 11247788888999999999999998853 3467899999999999999999999999999986
No 5
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=2.3e-26 Score=233.29 Aligned_cols=229 Identities=21% Similarity=0.288 Sum_probs=165.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.+|+|+|+||||||||+|+|+|..+ +++++.|.||+..+. |+...+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~--~i~s~~~~tTr~~~~-----------------------gi~~~~~-------- 55 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKI--SITSRKAQTTRHRIV-----------------------GIHTEGA-------- 55 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSE--EECCCCSSCCSSCEE-----------------------EEEEETT--------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc--cccCCCCCcceeeEE-----------------------EEEEECC--------
Confidence 3899999999999999999999987 778888877765432 1111111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
.++.++||||+.......+.+.+ ...+...+..+|++++++|++. +......+++.+...+.|+++|+
T Consensus 56 --------~~i~~iDTpG~~~~~~~~l~~~~--~~~~~~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~~~~P~ilvl 123 (301)
T 1ega_A 56 --------YQAIYVDTPGLHMEEKRAINRLM--NKAASSSIGDVELVIFVVEGTR--WTPDDEMVLNKLREGKAPVILAV 123 (301)
T ss_dssp --------EEEEEESSSSCCHHHHHHHHHHH--TCCTTSCCCCEEEEEEEEETTC--CCHHHHHHHHHHHSSSSCEEEEE
T ss_pred --------eeEEEEECcCCCccchhhHHHHH--HHHHHHHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHhcCCCEEEEE
Confidence 27889999999721111111111 1123345789999999999976 56666677778887789999999
Q ss_pred cCCCCCC-HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc-----ccCCCccHHhhH---------------H
Q 009050 358 NKADQVD-TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE-----SAFGPLGKELFE---------------K 416 (545)
Q Consensus 358 NK~D~~~-~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~-----~~~~~~~~~~f~---------------~ 416 (545)
||+|... .+.+.+....+ .+..++..+ +++||.++.++++ ...++..++.|+ .
T Consensus 124 NK~D~~~~~~~~~~~l~~l----~~~~~~~~~--i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~ 197 (301)
T 1ega_A 124 NKVDNVQEKADLLPHLQFL----ASQMNFLDI--VPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEI 197 (301)
T ss_dssp ESTTTCCCHHHHHHHHHHH----HTTSCCSEE--EECCTTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHH
T ss_pred ECcccCccHHHHHHHHHHH----HHhcCcCce--EEEECCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHH
Confidence 9999987 55554544433 233333334 8999999998876 233344443332 1
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhchhhhchhhhHHHHHHH
Q 009050 417 EQDDLLSDLKDIPKKACDRRINEFVKR-ARAAKIHAYIISHLRKEMPAMMGKAKTQQKLIDN 477 (545)
Q Consensus 417 e~e~ll~~l~~~~~~~~~~~i~~~~~~-~~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~ 477 (545)
-++++++.+.++.||++.+.+++|.++ .+.++|+|.|+|++++|++++||++|.++|.|+.
T Consensus 198 ~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~~i~v~~~~~k~i~ig~~G~~~k~ig~ 259 (301)
T 1ega_A 198 IREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGI 259 (301)
T ss_dssp HHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESSHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEEEEEEEECCceEEEECCCcHHHHHHHH
Confidence 247889999999999999999888753 3567899999999999999999999999999976
No 6
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.87 E-value=2e-25 Score=239.31 Aligned_cols=258 Identities=16% Similarity=0.203 Sum_probs=148.6
Q ss_pred HhCCCCC--CcccccccCCCCCCCCCcccccchhhhhhccCCCCCCCC-CCCCCCCCCCccccccccccccccchhhHHH
Q 009050 83 VQDGHQV--THDLWNSDVDFQNLKPPAMEGLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSKSSKKISMSSVTS 159 (545)
Q Consensus 83 ~~~g~~~--~~~l~~~~~~~~~l~~p~~~~l~~~i~a~t~~~~~~a~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (545)
...|..+ |.|...+||.++++++.++|++.|+|+|+|+.+++.|.+ ++|.|+. .+..|++++ ++ ..+.+|+
T Consensus 116 ~~~g~r~A~pGEFt~RAflngk~dL~qaEav~dli~a~t~~~~~~a~~~l~G~ls~---~i~~lr~~L-~~--~~a~iea 189 (476)
T 3gee_A 116 LDNGCRLAEPGEFTRRAFLNGRIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSV---RLGGLREQL-IR--SCALIEL 189 (476)
T ss_dssp HHTTCEECCTTHHHHHHHHTTSSCHHHHHHHHHHHHCCSHHHHHHHHHHHHTHHHH---HHHHHHTHH-HH--HHHTTTT
T ss_pred HHCCCeecCCcchhhhhhccCcCcHHHHHHHHHHHhCCCHHHHHHHHHhhCCcHHH---HHHHHHHHH-HH--HHHHhhe
Confidence 3445444 666667788999999999999999999999999999999 9997777 799999999 77 7788887
Q ss_pred HHHHHHH--------HHHhhccCceeeEEeCCcccCcccccccccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCC
Q 009050 160 IIDGLKR--------LYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP 231 (545)
Q Consensus 160 ~id~l~~--------~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p 231 (545)
.||+-++ ....++..+... ..........+.....+..|+|+|.+|||||||+|+|+|.+. .++++.|
T Consensus 190 ~iDf~eedi~~~~~~~l~~~i~~l~~~--l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~--a~vs~~~ 265 (476)
T 3gee_A 190 ELDFSEEDVEFQSRDELTMQIETLRSE--VNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQER--AIVSHMP 265 (476)
T ss_dssp CSSCCSSCCSSSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCEEEEEECCTTSSHHHHHHHCC-------------
T ss_pred ecCCCcccccchhHHHHHHHHHHHHHH--HHHHHHHHHhhHhhcCCCEEEEECCCCCCHHHHHHHHhCCCC--cccCCCC
Confidence 7773211 112222211110 000000001111223345799999999999999999999986 7788877
Q ss_pred cccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChH
Q 009050 232 TTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFT 311 (545)
Q Consensus 232 ~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~ 311 (545)
+||+..+.. ...+.| ..+.|+||||+..... .+.. +. .
T Consensus 266 gtT~d~~~~-----------------~i~~~g----------------------~~l~liDT~G~~~~~~-~ve~-~g-i 303 (476)
T 3gee_A 266 GTTRDYIEE-----------------CFIHDK----------------------TMFRLTDTAGLREAGE-EIEH-EG-I 303 (476)
T ss_dssp -------CE-----------------EEEETT----------------------EEEEEEC-------------------
T ss_pred CceEEEEEE-----------------EEEECC----------------------eEEEEEECCCCCcchh-HHHH-HH-H
Confidence 777654310 011112 2689999999965211 1110 00 0
Q ss_pred HHHHHHhcCCCEEEEEeCCCCCCccH---HHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCcc
Q 009050 312 GVTSWFAAKCDLILLLFDPHKLDISD---EFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEV 388 (545)
Q Consensus 312 ~ia~~~~~~aDliLlvlD~~~~~~~~---~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v 388 (545)
..+..++..+|++|+|+|++...... ....++..+. +.|+++|+||+|+.+...... ..+. +. ....+
T Consensus 304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~----~~-~~~~~ 374 (476)
T 3gee_A 304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI--RAIA----DG-TGTEV 374 (476)
T ss_dssp ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH--HHHH----HH-HTSCE
T ss_pred HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH--HHHH----hc-CCCce
Confidence 01233578999999999998733221 5566776665 689999999999986544321 1111 11 11233
Q ss_pred EEEEeeccCCCccCc
Q 009050 389 VRVYIGSFNDKPVNE 403 (545)
Q Consensus 389 ~~v~iSa~~~~~~~~ 403 (545)
+++||++|.|+++
T Consensus 375 --i~vSAktg~GI~e 387 (476)
T 3gee_A 375 --IGISALNGDGIDT 387 (476)
T ss_dssp --EECBTTTTBSHHH
T ss_pred --EEEEECCCCCHHH
Confidence 8999999999886
No 7
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.86 E-value=1.2e-24 Score=232.39 Aligned_cols=245 Identities=16% Similarity=0.205 Sum_probs=159.2
Q ss_pred CcccccccCCCCCCCCCcccccchhhhhhccCCCCCCCC-CCCCCCCCCCccccccccccccccchhhHHHHHHHHHH--
Q 009050 90 THDLWNSDVDFQNLKPPAMEGLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSKSSKKISMSSVTSIIDGLKR-- 166 (545)
Q Consensus 90 ~~~l~~~~~~~~~l~~p~~~~l~~~i~a~t~~~~~~a~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~l~~-- 166 (545)
|.|...+||.++++++.++|++.|+|+|+|+.+++.|.+ ++|.++. .+..|++++ ++ ..+.+|+.||+-++
T Consensus 117 pGEFt~RAflngk~dL~qaEav~dli~a~t~~~~~~a~~~l~g~~~~---~~~~~r~~l-~~--~~a~iEa~iDf~ed~~ 190 (462)
T 3geh_A 117 PGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAH---PIRQLRANC-LD--ILAEIEARIDFEEDLP 190 (462)
T ss_dssp TTHHHHHHHHTTSCCHHHHHHHHHHHHCCSHHHHHHHHHHHHTTTHH---HHHHHHHHH-HH--HHHHHHHHTTSSSSSC
T ss_pred CchhhhhHHhcCCcCHHHHHHHHHHHhCCCHHHHHHHHHHhchhHHH---HHHHHHHHH-HH--HHHHHHhhccccccCC
Confidence 555566677889999999999999999999999999999 9997777 799999999 88 89999999885220
Q ss_pred -----HHHhhccCceeeEEeCCcccCcccccccccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEe
Q 009050 167 -----LYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMS 241 (545)
Q Consensus 167 -----~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~ 241 (545)
....++..+.. ...........+.....+..|+|+|++|||||||+|+|+|.+. .+++..|+||+....
T Consensus 191 ~~~~~~~~~~i~~l~~--~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~--a~v~~~~gtT~d~~~-- 264 (462)
T 3geh_A 191 PLDDEAIISDIENIAA--EISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDR--AIVTDLPGTTRDVVE-- 264 (462)
T ss_dssp CCCTTTHHHHHHHHHH--HHHHHTTTHHHHHHHHHCEEEEEEECTTSSHHHHHHHHHHHHB--SCCSCCTTCCHHHHH--
T ss_pred hhhHHHHHHHHHHHHH--HHHHHHHHhhhhhhhcCCCEEEEEcCCCCCHHHHHHHHhCCCc--ccccCCCCeeEEEEE--
Confidence 11111111111 0000000011111223344799999999999999999999987 778887777654321
Q ss_pred CCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCChh----hhhhhhccChHHHHHHH
Q 009050 242 GVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGE----KQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 242 ~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sge----kq~v~~~~~~~~ia~~~ 317 (545)
....+.| ..+.|+||||+.+.. ...+. .+...
T Consensus 265 ---------------~~i~~~g----------------------~~v~liDT~G~~~~~~~ve~~gi~-------~~~~~ 300 (462)
T 3geh_A 265 ---------------SQLVVGG----------------------IPVQVLDTAGIRETSDQVEKIGVE-------RSRQA 300 (462)
T ss_dssp ---------------HEEEETT----------------------EEEEECC---------------------------CC
T ss_pred ---------------EEEEECC----------------------EEEEEEECCccccchhHHHHHHHH-------HHhhh
Confidence 0001112 268899999986521 11111 12335
Q ss_pred hcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccC
Q 009050 318 AAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFN 397 (545)
Q Consensus 318 ~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~ 397 (545)
+..+|++|+++|++. ........+++.+.. .|+++|+||+|+.+...... ..+... ..+.+.+||++
T Consensus 301 ~~~aD~vl~VvD~s~-~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~~~~~--------~~~~~~--~~~~i~iSAkt 367 (462)
T 3geh_A 301 ANTADLVLLTIDAAT-GWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQLITS--------LEYPEN--ITQIVHTAAAQ 367 (462)
T ss_dssp CCSCSEEEEEEETTT-CSCHHHHHHHHHHTT--SCEEEEEECTTSSCGGGSTT--------CCCCTT--CCCEEEEBTTT
T ss_pred hhcCCEEEEEeccCC-CCCHHHHHHHHhccC--CcEEEEEECCCCCcchhhHH--------HHHhcc--CCcEEEEECCC
Confidence 789999999999987 456666777777754 69999999999986543210 111111 22348999999
Q ss_pred CCccCc
Q 009050 398 DKPVNE 403 (545)
Q Consensus 398 ~~~~~~ 403 (545)
|.|+++
T Consensus 368 g~Gi~e 373 (462)
T 3geh_A 368 KQGIDS 373 (462)
T ss_dssp TBSHHH
T ss_pred CCCHHH
Confidence 999886
No 8
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=99.82 E-value=4.8e-20 Score=157.13 Aligned_cols=98 Identities=23% Similarity=0.352 Sum_probs=90.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhC
Q 009050 6 GPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQD 85 (545)
Q Consensus 6 ~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~ 85 (545)
+..|.+|+++++.|.+.|+.+|+ ++|+|++++++.+|+++||+.+.|.+||+.+|.|++|.|+++||+.||+++.++++
T Consensus 4 ~~~w~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~~~~~ 82 (106)
T 1eh2_A 4 GSPWAVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCALE 82 (106)
T ss_dssp --CCSSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHc
Confidence 34699999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCCCCCCCcccc
Q 009050 86 GHQVTHDLWNSDVDFQNLKPPAMEG 110 (545)
Q Consensus 86 g~~~~~~l~~~~~~~~~l~~p~~~~ 110 (545)
|.++|.+||+ .+.||+.+.
T Consensus 83 g~~lP~~LP~------~l~pps~r~ 101 (106)
T 1eh2_A 83 KEPVPMSLPP------ALVPPSKRK 101 (106)
T ss_dssp TCCCCSSCCT------TTSCTTCC-
T ss_pred CCCCCCCCCc------ccCChhhcc
Confidence 9999999887 566776654
No 9
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.80 E-value=4.8e-20 Score=201.21 Aligned_cols=97 Identities=26% Similarity=0.434 Sum_probs=88.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCC
Q 009050 7 PIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDG 86 (545)
Q Consensus 7 ~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~g 86 (545)
..|. +++|+++|+++|.++|+. +|+|+|++|++||++||||+++|++||+|||.+++|+|+++||++|||||.++++|
T Consensus 449 ~~w~-~~~~~~~y~~~F~~~~~~-~g~i~g~~a~~~~~~s~Lp~~~L~~IW~l~D~~~~g~L~~~eF~~am~Li~~~~~g 526 (550)
T 2qpt_A 449 AEWV-VTKDKSKYDEIFYNLAPA-DGKLSGSKAKTWMVGTKLPNSVLGRIWKLSDVDRDGMLDDEEFALASHLIEAKLEG 526 (550)
T ss_dssp --CT-TTTTHHHHHHHHHHTCCS-SSEECHHHHHHHHHHTTCCHHHHHHHHHHHCSSCSSSEEHHHHHHHHHHHHHHHHS
T ss_pred CCCC-CHHHHHHHHHHHHhcCCC-CCeecHHHHHHHHHHcCCCHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHHcC
Confidence 4588 478999999999999975 59999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCCCCCccccc
Q 009050 87 HQVTHDLWNSDVDFQNLKPPAMEGL 111 (545)
Q Consensus 87 ~~~~~~l~~~~~~~~~l~~p~~~~l 111 (545)
.++|..||+ .+.||+.+..
T Consensus 527 ~~lP~~lp~------~l~p~s~r~~ 545 (550)
T 2qpt_A 527 HGLPTNLPR------RLVPPSKRRQ 545 (550)
T ss_dssp CCCCSSCCG------GGSCSSCCCC
T ss_pred CCCCCCCCc------ccCChhhCCC
Confidence 999999887 5777776644
No 10
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.80 E-value=1.1e-22 Score=218.30 Aligned_cols=250 Identities=17% Similarity=0.247 Sum_probs=160.9
Q ss_pred CcccccccCCCCCCCCCcccccchhhhhhccCCCCCCCC-CCCCCCCCCCccccccccccccccchhhHHHHHHHHHH--
Q 009050 90 THDLWNSDVDFQNLKPPAMEGLDKLLANKRHSSKTSDPN-LNGSLQPQPSPSANWFSSKSSKKISMSSVTSIIDGLKR-- 166 (545)
Q Consensus 90 ~~~l~~~~~~~~~l~~p~~~~l~~~i~a~t~~~~~~a~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~l~~-- 166 (545)
|.+.-.++|.++++++.+.+++.|+|.+.|+.+++.|.+ ++|.++. .+..|++.+ ++ ..+.+|+.+|+-++
T Consensus 137 ~Geft~raf~nGk~Dl~qaE~i~dli~a~t~~~~~~a~~~l~g~l~~---~~~~~r~~l-~~--~~~~ie~~idf~eei~ 210 (482)
T 1xzp_A 137 PGEFTKRAFLNGKMDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRD---FVDSLRREL-IE--VLAEIRVELDYPDEIE 210 (482)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHCCSHHHHHHHHHHHTTHHHH---HHHHHHHHH-HH--HHHHHHHHHHSTTTCC
T ss_pred CCCcCCcCCCcCCcCHHHHHHHHHHHhhccHHHHHHHHHhcchhHhH---HHHHHHHHH-HH--HHHHhhhcCCCCcccc
Confidence 445555577889999999999999999999999999999 9997766 788999988 66 77777777764321
Q ss_pred -H---HHhhccCceeeEEeCCcccCcccccccccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeC
Q 009050 167 -L---YIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSG 242 (545)
Q Consensus 167 -~---~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~ 242 (545)
. ...++..+.. .........-.+.....+..|+|+|.||||||||+|+|+|.+. .++++.|.||+..+..
T Consensus 211 ~~~~~i~~~~~~l~~--eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~--a~vs~~~gTT~d~~~~-- 284 (482)
T 1xzp_A 211 TNTGEVVTRLERIKE--KLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR--AIVTDIPGTTRDVISE-- 284 (482)
T ss_dssp CCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHHHHHHHHTB--CCCCCSSCCSSCSCCE--
T ss_pred chHHHHHHHHHHHHH--HHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHHHHHHCCCC--CccCCCCCeeeeeEEE--
Confidence 0 1111111110 0000000000111122345899999999999999999999987 7788888777644210
Q ss_pred CCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCC-ChhhhhhhhccChHHHHHHHhcCC
Q 009050 243 VDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVL-SGEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 243 ~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~-sgekq~v~~~~~~~~ia~~~~~~a 321 (545)
.+.+.| ..+.|+||||+. .... .+. .+.. ..+..++.++
T Consensus 285 ---------------~i~~~g----------------------~~~~l~DTaG~~~~~~~-~ve-~~gi-~~~~~~~~~a 324 (482)
T 1xzp_A 285 ---------------EIVIRG----------------------ILFRIVDTAGVRSETND-LVE-RLGI-ERTLQEIEKA 324 (482)
T ss_dssp ---------------EEEETT----------------------EEEEEEESSCCCSSCCT-TCC-CCCH-HHHHHHHHHC
T ss_pred ---------------EEecCC----------------------eEEEEEECCCccccchh-hHH-HHHH-HHHHHHhhcc
Confidence 001112 268999999997 4211 111 0000 1234568999
Q ss_pred CEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCcc
Q 009050 322 DLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPV 401 (545)
Q Consensus 322 DliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~ 401 (545)
|++|+|+|++.. .+.+..++++.+ .+.|+++|+||+|+.+.....++.. + .+ . .++.+++||++|.|+
T Consensus 325 D~vl~VvD~s~~-~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~~~~~-~---~~----~-~~~~i~iSAktg~Gi 392 (482)
T 1xzp_A 325 DIVLFVLDASSP-LDEEDRKILERI--KNKRYLVVINKVDVVEKINEEEIKN-K---LG----T-DRHMVKISALKGEGL 392 (482)
T ss_dssp SEEEEEEETTSC-CCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHHHHH-H---HT----C-STTEEEEEGGGTCCH
T ss_pred cEEEEEecCCCC-CCHHHHHHHHHh--cCCCEEEEEECcccccccCHHHHHH-H---hc----C-CCcEEEEECCCCCCH
Confidence 999999999863 344555666655 3679999999999975311112111 1 11 1 122389999999998
Q ss_pred Cc
Q 009050 402 NE 403 (545)
Q Consensus 402 ~~ 403 (545)
++
T Consensus 393 ~e 394 (482)
T 1xzp_A 393 EK 394 (482)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 11
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=99.77 E-value=1.1e-18 Score=155.26 Aligned_cols=96 Identities=30% Similarity=0.442 Sum_probs=89.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCC
Q 009050 7 PIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDG 86 (545)
Q Consensus 7 ~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~g 86 (545)
..|.+ ++|+..|+.+|+.+| +++|+|++++++.+|+++||+.+.|.+||.++|.|++|.|+++||+.||+++.++++|
T Consensus 42 ~~W~~-~~e~~~l~~~F~~fD-d~dG~Is~~El~~~l~~~gl~~~el~~I~~~~D~d~dG~Ld~~EF~~am~li~~~~~G 119 (139)
T 2jq6_A 42 VEWVV-GKDKPTYDEIFYTLS-PVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANHLIKVKLEG 119 (139)
T ss_dssp CCCGG-GGTHHHHHHHHHHSC-CSSSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHHHTT
T ss_pred CCCCC-hHHHHHHHHHHHHhC-CCCCeECHHHHHHHHHHhCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHcC
Confidence 45876 478999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCCCCCcccc
Q 009050 87 HQVTHDLWNSDVDFQNLKPPAMEG 110 (545)
Q Consensus 87 ~~~~~~l~~~~~~~~~l~~p~~~~ 110 (545)
.++|.+|++ .+.||+.+.
T Consensus 120 ~~lP~~LP~------~l~pps~r~ 137 (139)
T 2jq6_A 120 HELPADLPP------HLVPPSKRR 137 (139)
T ss_dssp SCCCSCCCT------TSSCGGGCC
T ss_pred CCCCcccCc------ccCCccccc
Confidence 999999887 677776653
No 12
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=99.75 E-value=3.1e-18 Score=143.08 Aligned_cols=88 Identities=28% Similarity=0.375 Sum_probs=85.6
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH-hCC
Q 009050 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV-QDG 86 (545)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~-~~g 86 (545)
.|.+|+++++.|.+.|..+|+|++|+|+.++++.+|+++|++.+.+.+||..+|.|++|.++++||+.+|+++.++ ++|
T Consensus 1 ~w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~~g 80 (95)
T 1c07_A 1 TWVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQKLIKG 80 (95)
T ss_dssp CCSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHHHHHTSC
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred CCCCccccc
Q 009050 87 HQVTHDLWN 95 (545)
Q Consensus 87 ~~~~~~l~~ 95 (545)
.++|..||+
T Consensus 81 ~~lP~~lP~ 89 (95)
T 1c07_A 81 IDPPHVLTP 89 (95)
T ss_dssp CCCCSSCCT
T ss_pred CCCCCcCCc
Confidence 999999887
No 13
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=99.75 E-value=4.1e-18 Score=141.44 Aligned_cols=87 Identities=26% Similarity=0.494 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 009050 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQ 88 (545)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~g~~ 88 (545)
|.+|++++..|.+.|+.+|+|++|+|+.++++.+|.+.|++.+.+.+||..+|.|++|.++++||+.+|+++.++|+|.+
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~ 80 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGYD 80 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccc
Q 009050 89 VTHDLWN 95 (545)
Q Consensus 89 ~~~~l~~ 95 (545)
+|.+||+
T Consensus 81 lp~~lp~ 87 (92)
T 1fi6_A 81 LPEKLPE 87 (92)
T ss_dssp CCCCSCS
T ss_pred CCccCCH
Confidence 9999888
No 14
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=99.74 E-value=5.1e-18 Score=142.87 Aligned_cols=91 Identities=25% Similarity=0.523 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCccc
Q 009050 14 DHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQVTHDL 93 (545)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~g~~~~~~l 93 (545)
++.+.|.++|..+|+|++|+|++++++.+|.++|++.+.+.+||..+|.|++|.++++||+.+|+++.++|+|.++|.++
T Consensus 8 ~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~~~~~~ 87 (99)
T 1qjt_A 8 SGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNGLEVSLSS 87 (99)
T ss_dssp TTCTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTTCCSSGGG
T ss_pred hhHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcCCCCChhh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccccCCCCCCCCCccc
Q 009050 94 WNSDVDFQNLKPPAME 109 (545)
Q Consensus 94 ~~~~~~~~~l~~p~~~ 109 (545)
++ ..+|||++.
T Consensus 88 l~-----~~~p~p~~~ 98 (99)
T 1qjt_A 88 LS-----LAVPPPRFH 98 (99)
T ss_dssp CS-----SCCCCCSSC
T ss_pred cc-----CCCCCCCCC
Confidence 77 689999875
No 15
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=99.73 E-value=2.2e-18 Score=147.90 Aligned_cols=99 Identities=27% Similarity=0.428 Sum_probs=92.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHh
Q 009050 5 TGPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQ 84 (545)
Q Consensus 5 ~~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~ 84 (545)
+...|.+|++++..|.+.|+.+|+|++|+|++++++.+|.++|++.+.+.+||..+|.|++|.++++||+.+|+++.++|
T Consensus 10 ~~~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~~~~~~ 89 (110)
T 1iq3_A 10 PDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLIVARK 89 (110)
T ss_dssp CCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHH
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccCCCCCCCCCccc
Q 009050 85 DGHQVTHDLWNSDVDFQNLKPPAME 109 (545)
Q Consensus 85 ~g~~~~~~l~~~~~~~~~l~~p~~~ 109 (545)
+|.++|..||+ .+-||.++
T Consensus 90 ~G~~lP~~LP~------~l~pp~~~ 108 (110)
T 1iq3_A 90 NGYPLPEGLPP------TLQPEFIV 108 (110)
T ss_dssp HTCCCCCCSSC------CSCSSCCC
T ss_pred cCCCCCcccCh------hhCcCccc
Confidence 99999999887 55566543
No 16
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.70 E-value=9.6e-17 Score=154.20 Aligned_cols=162 Identities=19% Similarity=0.267 Sum_probs=108.4
Q ss_pred ccCceEEEEcCCCCChHHHHHHHHccc-CCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchh
Q 009050 195 DAKPMVMLLGQYSTGKTTFIKHLLRTS-YPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLS 273 (545)
Q Consensus 195 ~~~~~V~lvG~~naGKSTLlN~Llg~~-~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~ 273 (545)
...+.|+|+|.+|||||||+|+|+|.. . ..++..+.+++........ ...+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~--~~~~~~~~~t~~~~~~~~~----------------~~~~---------- 78 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRL--AFASKTPGRTQHINYFSVG----------------PAAE---------- 78 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSS--SCTTCCCCSCCCEEEEEES----------------CTTS----------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcc--eeecCCCCcccceEEEEec----------------CCCC----------
Confidence 345699999999999999999999987 4 4666666665543221100 0001
Q ss_pred hhhhhcCchhhccCceeecCCCCCChh-----hhhhhhccChHHHHHHHh---cCCCEEEEEeCCCCCCccHHHHHHHHH
Q 009050 274 KFECSQMPHSLLEHITLVDTPGVLSGE-----KQRTQRAYDFTGVTSWFA---AKCDLILLLFDPHKLDISDEFKRVITS 345 (545)
Q Consensus 274 ~~~~~~~~~~lL~~v~liDTPG~~sge-----kq~v~~~~~~~~ia~~~~---~~aDliLlvlD~~~~~~~~~~~~~l~~ 345 (545)
..+.|+||||+.... +.. +..+...++ ..+|++++++|+.. ........++..
T Consensus 79 ------------~~~~l~DtpG~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~ 139 (223)
T 4dhe_A 79 ------------PVAHLVDLPGYGYAEVPGAAKAH------WEQLLSSYLQTRPQLCGMILMMDARR-PLTELDRRMIEW 139 (223)
T ss_dssp ------------CSEEEEECCCCCSSCCCSTHHHH------HHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHH
T ss_pred ------------CcEEEEcCCCCCcccCChhhHHH------HHHHHHHHHhcCcCcCEEEEEEeCCC-CCCHHHHHHHHH
Confidence 278999999986521 111 111233333 44888999999987 456777788888
Q ss_pred HhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccc---cCCccEEEEeeccCCCccCc
Q 009050 346 LRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVL---NTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 346 L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~---~~~~v~~v~iSa~~~~~~~~ 403 (545)
+...+.|+++|+||+|+.+..+.......+...+.... .....+.+++||++|.|+++
T Consensus 140 l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~ 200 (223)
T 4dhe_A 140 FAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDD 200 (223)
T ss_dssp HGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHH
T ss_pred HHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHH
Confidence 88888999999999999987665554444333333320 01233458999999999875
No 17
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.67 E-value=2.3e-17 Score=163.07 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=101.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.|+|+|.+|||||||+|+|+|.. ..+++.|++|...... .+.+.+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~---~~v~~~pg~Tv~~~~~-----------------~~~~~~-------------- 47 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN---QRVGNWPGVTVEKKTG-----------------EFLLGE-------------- 47 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS---EEEEECTTSSSEEEEE-----------------EEEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CCccCCCCceEEEEEE-----------------EEEECC--------------
Confidence 579999999999999999999987 5666666555433210 011111
Q ss_pred hcCchhhccCceeecCCCCCChhhh----hhhhccChHHHHHHHh--cCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCC
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQ----RTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDD 351 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq----~v~~~~~~~~ia~~~~--~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~ 351 (545)
..+.|+||||+.+.... ... ..+++.++ .++|++|+++|+++ .+....+..++.+.+.
T Consensus 48 --------~~~~lvDtpG~~~~~~~~~~~~~~-----e~i~~~~~~~~~~d~vi~VvDas~---~~~~~~l~~~l~~~~~ 111 (256)
T 3iby_A 48 --------HLIEITDLPGVYSLVANAEGISQD-----EQIAAQSVIDLEYDCIINVIDACH---LERHLYLTSQLFELGK 111 (256)
T ss_dssp --------EEEEEEECCCCSSCC------CHH-----HHHHHHHHHHSCCSEEEEEEEGGG---HHHHHHHHHHHTTSCS
T ss_pred --------eEEEEEeCCCcccccccccCCCHH-----HHHHHHHHhhCCCCEEEEEeeCCC---chhHHHHHHHHHHcCC
Confidence 26889999999762110 111 22455666 89999999999986 4566778888888899
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 352 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 352 ~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+++|+||+|+.....+......+...+ + ++.+++||++|.|+++
T Consensus 112 pvilv~NK~Dl~~~~~~~~~~~~l~~~l----g---~~vi~~SA~~g~gi~e 156 (256)
T 3iby_A 112 PVVVALNMMDIAEHRGISIDTEKLESLL----G---CSVIPIQAHKNIGIPA 156 (256)
T ss_dssp CEEEEEECHHHHHHTTCEECHHHHHHHH----C---SCEEECBGGGTBSHHH
T ss_pred CEEEEEEChhcCCcCCcHHHHHHHHHHc----C---CCEEEEECCCCCCHHH
Confidence 9999999999864322111112221112 2 2348999999999887
No 18
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.65 E-value=9e-16 Score=171.97 Aligned_cols=207 Identities=19% Similarity=0.236 Sum_probs=122.0
Q ss_pred ccccccccccccccchhhHHHHHHHHHHHHHhhccCceeeEEeCCcccCcccccccccCceEEEEcCCCCChHHHHHHHH
Q 009050 139 PSANWFSSKSSKKISMSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLL 218 (545)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~id~l~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Ll 218 (545)
.+..||.++ .+ .++.+++.+|+.+.................... ..+... ......|+|+|.+|+|||||+|+|+
T Consensus 16 ~~~~~r~~L-~~--~l~~le~~ld~~e~~~~~~~~~~~l~~~l~~L~-~~~~~l-~~~~~~V~VvG~~naGKSSLlNaLl 90 (695)
T 2j69_A 16 RVAQVRSEM-SV--CLNKLAETINKAELAGDSSSGKLSLERDIEDIT-IASKNL-QQGVFRLLVLGDMKRGKSTFLNALI 90 (695)
T ss_dssp HHHHHHHHH-HH--HHHHHHHHHHHHHTTTTTTTCCCCCHHHHHHHH-HHHHHH-HHCCEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHH-HH--HHHHHHHHHHHhhhccccchhhhHHHHHHHHHH-HHHHHh-ccCCCEEEEECCCCCCHHHHHHHHh
Confidence 367888888 67 788888888876532110000000000000000 000000 1234489999999999999999999
Q ss_pred cccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCC--------CCCcccccc-------------cchhhhhh
Q 009050 219 RTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMP--------FSGLTTFGT-------------AFLSKFEC 277 (545)
Q Consensus 219 g~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~--------~~gl~~~~~-------------~~~~~~~~ 277 (545)
|..+ .+++..|+|...+.+.+++.. ..++....... +.+....+. ........
T Consensus 91 g~~~--~~v~~~p~T~~~~~i~~g~~~----~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~ 164 (695)
T 2j69_A 91 GENL--LPSDVNPCTAVLTVLRYGPEK----KVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAV 164 (695)
T ss_dssp TSSC--SCCCCCTTTCCCEEEEECSSC----EEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEE
T ss_pred CCCC--CCCCCCCCccceEEEEeCCCC----eEEEEEcCCCcccccChhhhhhhhcCCHHHHHHHhhccccccccceEEE
Confidence 9998 889999999888887776532 12222111000 000000000 00000011
Q ss_pred hcCchhhc-cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHH-HHhcCCCeEEE
Q 009050 278 SQMPHSLL-EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVIT-SLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL-~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~-~L~~~~~~iii 355 (545)
...|.+.+ ..+.||||||+.+... ....+..++.++|++|+|+|++. +.+......+. .+...+.|+++
T Consensus 165 i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~-~~s~~e~~~l~~~l~~~~~~iii 235 (695)
T 2j69_A 165 VEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQ-PCTLGERRYLENYIKGRGLTVFF 235 (695)
T ss_dssp EEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTS-TTCHHHHHHHHHHTTTSCCCEEE
T ss_pred EEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCC-ccchhHHHHHHHHHHhhCCCEEE
Confidence 23344555 4899999999865321 12256677899999999999987 34555555554 55666789999
Q ss_pred EecCCCCCCH
Q 009050 356 VLNKADQVDT 365 (545)
Q Consensus 356 VlNK~D~~~~ 365 (545)
|+||+|+...
T Consensus 236 VlNK~Dl~~~ 245 (695)
T 2j69_A 236 LVNAWDQVRE 245 (695)
T ss_dssp EEECGGGGGG
T ss_pred EEECcccccc
Confidence 9999998743
No 19
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.65 E-value=1.2e-15 Score=143.07 Aligned_cols=160 Identities=17% Similarity=0.224 Sum_probs=96.3
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
..+.|+|+|++|||||||+|+|++..+. ..+++.+.++.....+. .+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~~-------------------------~~------- 68 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNL-ARTSSKPGKTQTLNFYI-------------------------IN------- 68 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEE-------------------------ET-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cccCCCCCceeeEEEEE-------------------------EC-------
Confidence 3459999999999999999999998631 33444444333221100 00
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCC---CEEEEEeCCCCCCccHHHHHHHHHHhcCCCe
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKC---DLILLLFDPHKLDISDEFKRVITSLRGHDDK 352 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~a---DliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ 352 (545)
..+.++||||+....... .....+..+...++..+ |++++++|++. ..+.....+++.+...+.|
T Consensus 69 ----------~~~~l~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~p 136 (195)
T 1svi_A 69 ----------DELHFVDVPGYGFAKVSK-SEREAWGRMIETYITTREELKAVVQIVDLRH-APSNDDVQMYEFLKYYGIP 136 (195)
T ss_dssp ----------TTEEEEECCCBCCCSSCH-HHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTCC
T ss_pred ----------CcEEEEECCCCCccccCH-HHHHHHHHHHHHHHhhhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCC
Confidence 268999999975421000 00001222444555555 99999999987 3455556667777777889
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+..++......+...++.. .....+++||++|.|+++
T Consensus 137 ~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~ 184 (195)
T 1svi_A 137 VIVIATKADKIPKGKWDKHAKVVRQTLNID---PEDELILFSSETKKGKDE 184 (195)
T ss_dssp EEEEEECGGGSCGGGHHHHHHHHHHHHTCC---TTSEEEECCTTTCTTHHH
T ss_pred EEEEEECcccCChHHHHHHHHHHHHHHccc---CCCceEEEEccCCCCHHH
Confidence 999999999987655544444433223321 233448999999998775
No 20
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.65 E-value=1.6e-15 Score=141.84 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=102.2
Q ss_pred ccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhh
Q 009050 195 DAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSK 274 (545)
Q Consensus 195 ~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~ 274 (545)
...+.|+|+|.+|||||||+|+|++... ..+++.+.++........ +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~t~~~~~~~~--------------------~----------- 67 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKI--AFVSKTPGKTRSINFYLV--------------------N----------- 67 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCC--SCCCSSCCCCCCEEEEEE--------------------T-----------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcc--ccccCCCCCccCeEEEEE--------------------C-----------
Confidence 3456999999999999999999999886 556665555443322100 0
Q ss_pred hhhhcCchhhccCceeecCCCCCCh-----hhhhhhhccChHHHHHHHhc---CCCEEEEEeCCCCCCccHHHHHHHHHH
Q 009050 275 FECSQMPHSLLEHITLVDTPGVLSG-----EKQRTQRAYDFTGVTSWFAA---KCDLILLLFDPHKLDISDEFKRVITSL 346 (545)
Q Consensus 275 ~~~~~~~~~lL~~v~liDTPG~~sg-----ekq~v~~~~~~~~ia~~~~~---~aDliLlvlD~~~~~~~~~~~~~l~~L 346 (545)
..+.++||||+... ++.. +..+...++. .+|++++++|+.. ........++..+
T Consensus 68 -----------~~~~i~Dt~G~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~ 129 (195)
T 3pqc_A 68 -----------SKYYFVDLPGYGYAKVSKKERML------WKRLVEDYFKNRWSLQMVFLLVDGRI-PPQDSDLMMVEWM 129 (195)
T ss_dssp -----------TTEEEEECCCBSSSCCCHHHHHH------HHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHH
T ss_pred -----------CcEEEEECCCCccccCChhhHHH------HHHHHHHHHhcCcCceEEEEEecCCC-CCCHHHHHHHHHH
Confidence 26789999996531 1111 1223344444 4599999999876 4456666777777
Q ss_pred hcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 347 RGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 347 ~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
...+.|+++|+||+|+.+..+.......+...... .. ....+.+||++|.|+++
T Consensus 130 ~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~Sa~~~~gv~~ 183 (195)
T 3pqc_A 130 KSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK-YG--EYTIIPTSSVTGEGISE 183 (195)
T ss_dssp HHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS-SC--CSCEEECCTTTCTTHHH
T ss_pred HHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhh-cC--CCceEEEecCCCCCHHH
Confidence 77789999999999998754444333333211121 11 22338999999999875
No 21
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=131.23 Aligned_cols=99 Identities=26% Similarity=0.429 Sum_probs=91.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhC
Q 009050 6 GPIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQD 85 (545)
Q Consensus 6 ~~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~ 85 (545)
.+.|.+|++++..|..+|..+|.|++|+|+.++.+.+|...+++.+.+.+||..+|.|++|.++++||+.+|+++..+++
T Consensus 3 ~~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~~~D~d~dG~I~~~EF~~~~~~~~~~~~ 82 (111)
T 2kgr_A 3 VAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHLIDVAMS 82 (111)
T ss_dssp SCCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCCCCCCCcccc
Q 009050 86 GHQVTHDLWNSDVDFQNLKPPAMEG 110 (545)
Q Consensus 86 g~~~~~~l~~~~~~~~~l~~p~~~~ 110 (545)
|.++|..|++ .+.||+...
T Consensus 83 G~~lp~~lp~------~l~pps~~~ 101 (111)
T 2kgr_A 83 GQPLPPVLPP------EYIPPSFRR 101 (111)
T ss_dssp TCCCCSSCCG------GGSCTTTTC
T ss_pred CCCCccccCc------ccCCCccCC
Confidence 9999998877 555665443
No 22
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.63 E-value=3.1e-16 Score=167.04 Aligned_cols=154 Identities=23% Similarity=0.321 Sum_probs=92.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
|.|+|+|.||||||||+|+|+|... ++++..|++|+...... ..+.+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~--~~v~~~~g~T~d~~~~~-----------------~~~~~-------------- 48 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK--AIVEDEEGVTRDPVQDT-----------------VEWYG-------------- 48 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------CCSEEE-----------------EEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--ceecCCCCCccceeeEE-----------------EEECC--------------
Confidence 5799999999999999999999886 77888777766543200 00111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..+.+|||||+.......+... +...+..++.++|++|+|+|+.. +.+.....+.+.++..+.|+++|+
T Consensus 49 --------~~~~l~DT~G~~~~~~~~~~~~--~~~~~~~~~~~ad~il~V~D~~~-~~~~~d~~i~~~l~~~~~p~ilv~ 117 (439)
T 1mky_A 49 --------KTFKLVDTCGVFDNPQDIISQK--MKEVTLNMIREADLVLFVVDGKR-GITKEDESLADFLRKSTVDTILVA 117 (439)
T ss_dssp --------EEEEEEECTTTTSSGGGCCCHH--HHHHHHHHHTTCSEEEEEEETTT-CCCHHHHHHHHHHHHHTCCEEEEE
T ss_pred --------eEEEEEECCCccccccchHHHH--HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEE
Confidence 2678999999865211111111 12346677899999999999986 456655566666666688999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+.+..+ ...... ++. ++..++ +++||.+|.|+.+
T Consensus 118 NK~D~~~~~~-~~~~~~-~~~----lg~~~~--~~iSA~~g~gv~~ 155 (439)
T 1mky_A 118 NKAENLREFE-REVKPE-LYS----LGFGEP--IPVSAEHNINLDT 155 (439)
T ss_dssp ESCCSHHHHH-HHTHHH-HGG----GSSCSC--EECBTTTTBSHHH
T ss_pred eCCCCccccH-HHHHHH-HHh----cCCCCE--EEEeccCCCCHHH
Confidence 9999853211 111011 122 233345 7999999999876
No 23
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.61 E-value=4.4e-16 Score=155.17 Aligned_cols=148 Identities=19% Similarity=0.186 Sum_probs=95.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|+|.. ..+++.|++|...... .+.+ +
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~---~~v~~~pg~tv~~~~~-----------------~~~~-~-------------- 48 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN---QRVGNWPGVTVERKSG-----------------LVKK-N-------------- 48 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC---CCCCSSSCCCCSCEEE-----------------ECTT-C--------------
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCCcEEEEEE-----------------EEec-C--------------
Confidence 479999999999999999999987 5566655544322110 0001 1
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHh--cCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~--~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..+.++||||..+-..... ...+++.++ .++|++++++|+++ .+....+..++.+.+.|+++
T Consensus 49 --------~~l~l~DtpG~~~~~~~~~-----~e~v~~~~~~~~~~d~vi~V~D~t~---~e~~~~~~~~l~~~~~p~il 112 (272)
T 3b1v_A 49 --------KDLEIQDLPGIYSMSPYSP-----EAKVARDYLLSQRADSILNVVDATN---LERNLYLTTQLIETGIPVTI 112 (272)
T ss_dssp --------TTEEEEECCCCSCSSCSSH-----HHHHHHHHHHTTCCSEEEEEEEGGG---HHHHHHHHHHHHHTCSCEEE
T ss_pred --------CeEEEEECCCcCccCCCCh-----HHHHHHHHHhcCCCCEEEEEecCCc---hHhHHHHHHHHHhcCCCEEE
Confidence 2789999999975210000 012344444 37999999999986 34556677777778899999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.....+......+. +.++ ++.+++||++|.|+++
T Consensus 113 v~NK~Dl~~~~~~~~~~~~l~----~~lg---~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 113 ALNMIDVLDGQGKKINVDKLS----YHLG---VPVVATSALKQTGVDQ 153 (272)
T ss_dssp EEECHHHHHHTTCCCCHHHHH----HHHT---SCEEECBTTTTBSHHH
T ss_pred EEEChhhCCcCCcHHHHHHHH----HHcC---CCEEEEEccCCCCHHH
Confidence 999999753211110111121 1112 2348999999999887
No 24
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.61 E-value=1.4e-16 Score=159.13 Aligned_cols=153 Identities=19% Similarity=0.194 Sum_probs=98.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|+|.. ..+++.|++|....... +.+.+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~---~~v~~~~g~t~~~~~~~-----------------~~~~~-------------- 49 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR---QRVGNWAGVTVERKEGQ-----------------FSTTD-------------- 49 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC---EEEEECTTSSSEEEEEE-----------------EECSS--------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---cccCCCCCeeEEEEEEE-----------------EEeCC--------------
Confidence 479999999999999999999987 56666666554432210 11111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHH--hcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWF--AAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~--~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..+.++||||+.+-......... ...+++.+ ...+|++++++|+++ .+....+..++.+.+.|+++
T Consensus 50 --------~~~~liDtpG~~~~~~~~~~~~~-~e~i~~~~~~~~~~d~ii~VvD~~~---~~~~~~~~~~l~~~~~p~iv 117 (274)
T 3i8s_A 50 --------HQVTLVDLPGTYSLTTISSQTSL-DEQIACHYILSGDADLLINVVDASN---LERNLYLTLQLLELGIPCIV 117 (274)
T ss_dssp --------CEEEEEECCCCSCSCC----CCH-HHHHHHHHHHHTCCSEEEEEEEGGG---HHHHHHHHHHHHHHTCCEEE
T ss_pred --------CceEEEECcCCCccccccccCCH-HHHHHHHHHhhcCCCEEEEEecCCC---hHHHHHHHHHHHhcCCCEEE
Confidence 26889999998762100000000 01134444 379999999999986 35566777777777899999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+...+......+. +.++ ++.+++||++|.|+++
T Consensus 118 v~NK~Dl~~~~~~~~~~~~l~----~~lg---~~~i~~SA~~g~gi~e 158 (274)
T 3i8s_A 118 ALNMLDIAEKQNIRIEIDALS----ARLG---CPVIPLVSTRGRGIEA 158 (274)
T ss_dssp EEECHHHHHHTTEEECHHHHH----HHHT---SCEEECCCGGGHHHHH
T ss_pred EEECccchhhhhHHHHHHHHH----HhcC---CCEEEEEcCCCCCHHH
Confidence 999999764322111112221 1112 2348999999999887
No 25
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.61 E-value=2.2e-15 Score=141.47 Aligned_cols=157 Identities=19% Similarity=0.183 Sum_probs=90.6
Q ss_pred CcccccccccCc-eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcc
Q 009050 187 PLLTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLT 265 (545)
Q Consensus 187 ~~l~~~~~~~~~-~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~ 265 (545)
.+++++++..+. .|+++|++|||||||+|+|++..+ ..+.+....+...+ .+.+
T Consensus 12 ~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~--~~~~~t~~~~~~~~---------------------~~~~-- 66 (190)
T 1m2o_B 12 DVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRL--ATLQPTWHPTSEEL---------------------AIGN-- 66 (190)
T ss_dssp ------------CEEEEEESTTSSHHHHHHHHHHSCC--CCCCCCCSCEEEEE---------------------EETT--
T ss_pred HHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCC--CccccCCCCCeEEE---------------------EECC--
Confidence 355666666655 899999999999999999998775 33322211111111 0111
Q ss_pred cccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHH
Q 009050 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITS 345 (545)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~ 345 (545)
..+.++||||..... . +...++..+|++++++|+++....++...++..
T Consensus 67 --------------------~~~~i~Dt~G~~~~~--~---------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 115 (190)
T 1m2o_B 67 --------------------IKFTTFDLGGHIQAR--R---------LWKDYFPEVNGIVFLVDAADPERFDEARVELDA 115 (190)
T ss_dssp --------------------EEEEEEECCCSGGGT--T---------SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHH
T ss_pred --------------------EEEEEEECCCCHHHH--H---------HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHH
Confidence 268899999984311 1 123446899999999999874433445555555
Q ss_pred Hhc----CCCeEEEEecCCCCCCHHHHHHHHHHHHHHhccc--------ccCCccEEEEeeccCCCccCc
Q 009050 346 LRG----HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKV--------LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 346 L~~----~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~--------~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+.. .+.|+++|.||+|+.+.....++...+ +.. .....+..+.+||++|.|+++
T Consensus 116 ~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 181 (190)
T 1m2o_B 116 LFNIAELKDVPFVILGNKIDAPNAVSEAELRSAL----GLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE 181 (190)
T ss_dssp HHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT----TCSSCCC---CCSSCCEEEEECBTTTTBSHHH
T ss_pred HHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHh----CCccccccccccccceEEEEEeECCcCCCHHH
Confidence 532 468999999999997521111221111 111 011234458899999999875
No 26
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.60 E-value=1.6e-15 Score=161.29 Aligned_cols=159 Identities=16% Similarity=0.240 Sum_probs=100.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|+|+|... ..+++.++||+..+.. .+.+.+
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~--~~~~~~~gtT~d~~~~-----------------~~~~~~-------------- 222 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEER--VIVSNVAGTTRDAVDT-----------------SFTYNQ-------------- 222 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT--EEEC---------CCE-----------------EEEETT--------------
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc--eeecCCCCceeeeeEE-----------------EEEECC--------------
Confidence 4899999999999999999999886 6677777666544210 000111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHH--HHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGV--TSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~i--a~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..+.||||||+....+ +....+.... +..++.++|++|+++|++. +.+.+...++..+...+.++++
T Consensus 223 --------~~~~l~DT~G~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~-~~s~~~~~~~~~~~~~~~~iii 291 (436)
T 2hjg_A 223 --------QEFVIVDTAGMRKKGK--VYETTEKYSVLRALKAIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEAGKAVVI 291 (436)
T ss_dssp --------EEEEETTHHHHTCBTT--BCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEEE
T ss_pred --------eEEEEEECCCcCcCcc--ccchHHHHHHHHHHHHHHhCCEEEEEEcCCc-CCcHHHHHHHHHHHHcCCcEEE
Confidence 2688999999864111 1111111111 2245789999999999987 5677777888888888899999
Q ss_pred EecCCCCCCHHH--HHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQ--LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~--l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+..+ ..+....+...+... ...+.+++||++|.|+++
T Consensus 292 v~NK~Dl~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~SA~tg~~v~~ 338 (436)
T 2hjg_A 292 VVNKWDAVDKDESTMKEFEENIRDHFQFL---DYAPILFMSALTKKRIHT 338 (436)
T ss_dssp EEECGGGSCCCTTHHHHHHHHHHHHCGGG---TTSCEEECCTTTCTTGGG
T ss_pred EEECccCCCcchHHHHHHHHHHHHhcccC---CCCCEEEEecccCCCHHH
Confidence 999999986322 223333332222222 123348999999999986
No 27
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.60 E-value=4.1e-16 Score=154.32 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=96.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|+|... .++..|++|..... ..+.+.+
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~---~~~~~pg~tv~~~~-----------------~~~~~~~-------------- 51 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQ---YVANWPGVTVEKKE-----------------GVFTYKG-------------- 51 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCE---EEEECTTSCCEEEE-----------------EEEEETT--------------
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCC---cccCCCCceEEEEE-----------------EEEEECC--------------
Confidence 4799999999999999999999873 35554444432221 0000111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHh--cCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~--~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..+.|+||||..+-...... ..+++.++ ..+|++++++|+++ .+....++.++.+.+.|+++
T Consensus 52 --------~~~~l~DtpG~~~~~~~~~~-----e~v~~~~~~~~~~d~ii~V~D~t~---~~~~~~~~~~l~~~~~pvil 115 (258)
T 3a1s_A 52 --------YTINLIDLPGTYSLGYSSID-----EKIARDYLLKGDADLVILVADSVN---PEQSLYLLLEILEMEKKVIL 115 (258)
T ss_dssp --------EEEEEEECCCCSSCCSSSHH-----HHHHHHHHHHSCCSEEEEEEETTS---CHHHHHHHHHHHTTTCCEEE
T ss_pred --------eEEEEEECCCcCccCCCCHH-----HHHHHHHHhhcCCCEEEEEeCCCc---hhhHHHHHHHHHhcCCCEEE
Confidence 27899999999762110000 11344444 68999999999987 34566788888888999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.....+......+. +.++ ++.+++||++|.|+++
T Consensus 116 v~NK~Dl~~~~~i~~~~~~l~----~~lg---~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 116 AMTAIDEAKKTGMKIDRYELQ----KHLG---IPVVFTSSVTGEGLEE 156 (258)
T ss_dssp EEECHHHHHHTTCCBCHHHHH----HHHC---SCEEECCTTTCTTHHH
T ss_pred EEECcCCCCccchHHHHHHHH----HHcC---CCEEEEEeeCCcCHHH
Confidence 999999754221110011221 1112 2348999999999886
No 28
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.60 E-value=7.6e-16 Score=154.98 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=67.8
Q ss_pred cCceeecCCCCCChh----hhhhhhccChHHHHHHHhcCCCEEE-EEeCCCCCCccHHH-HHHHHHHhcCCCeEEEEecC
Q 009050 286 EHITLVDTPGVLSGE----KQRTQRAYDFTGVTSWFAAKCDLIL-LLFDPHKLDISDEF-KRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 286 ~~v~liDTPG~~sge----kq~v~~~~~~~~ia~~~~~~aDliL-lvlD~~~~~~~~~~-~~~l~~L~~~~~~iiiVlNK 359 (545)
..+.||||||+.... ...+.+ .+..++..++..++.++ +++|+.. +..... ..+++.+...+.|+++|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~il~v~d~~~-~~~~~~~~~~~~~~~~~~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEF--QIRDMLMQFVTKENCLILAVSPANS-DLANSDALKIAKEVDPQGQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHH--HHHHHHHHHHTSTTEEEEEEEESSS-CGGGCHHHHHHHHHCTTCSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCCCchHHH--HHHHHHHHHHcCCCeEEEEEecCCc-chhhhHHHHHHHHhCCCCCeEEEEEEc
Confidence 479999999987521 111110 12335667788888665 6899876 333333 36777787778999999999
Q ss_pred CCCCCHHH-HHHHHHHHHHHhccccc--CCccEEEEeeccCCCccCc
Q 009050 360 ADQVDTQQ-LMRVYGALMWSLGKVLN--TPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 360 ~D~~~~~~-l~~v~~~l~~~l~k~~~--~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+.+... ..+... +.... ....+.+++||++|.|+++
T Consensus 202 ~Dl~~~~~~~~~~~~------~~~~~~~~~~~~v~~~SA~~~~gi~~ 242 (299)
T 2aka_B 202 LDLMDEGTDARDVLE------NKLLPLRRGYIGVVNRSQKDIDGKKD 242 (299)
T ss_dssp GGGSCTTCCCHHHHT------TCSSCCTTCEEECCCCCCBCTTSCBC
T ss_pred cccCCCCchHHHHHh------CCcCcCCCCcEEEECCChhhcccccc
Confidence 99986432 222111 11111 1112337899999999986
No 29
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.60 E-value=4.8e-16 Score=142.47 Aligned_cols=149 Identities=21% Similarity=0.223 Sum_probs=89.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|+|.. ..++..|+++..... . ...+.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~---~~~~~~~~~t~~~~~-------------~----~~~~~~-------------- 49 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN---VYIGNWPGVTVEKKE-------------G----EFEYNG-------------- 49 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS---SSCC-----CCCCCE-------------E----EEEETT--------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---eeccCCCCcceeeeE-------------E----EEEECC--------------
Confidence 479999999999999999999977 344444443321110 0 000011
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHh--cCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~--~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..+.++||||...-..... ...++..++ .++|++++++|++. .+....++..+.+.+.|+++
T Consensus 50 --------~~l~i~Dt~G~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~v~D~~~---~~~~~~~~~~~~~~~~p~il 113 (165)
T 2wji_A 50 --------EKFKVVDLPGVYSLTANSI-----DEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLMEMGANLLL 113 (165)
T ss_dssp --------EEEEEEECCCCSCSSSSSH-----HHHHHHHHHHHHCCSEEEEEEETTC---HHHHHHHHHHHHHTTCCEEE
T ss_pred --------cEEEEEECCCcccCCCcch-----hHHHHHHHHhcCCCCEEEEEecCCc---hhHhHHHHHHHHhcCCCEEE
Confidence 2688999999864110000 011334444 48999999999986 34455677777777899999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.....+......+...++ ...+++||++|.|+++
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 114 ALNKMDLAKSLGIEIDVDKLEKILG-------VKVVPLSAAKKMGIEE 154 (165)
T ss_dssp EEECHHHHHHTTCCCCHHHHHHHHT-------SCEEECBGGGTBSHHH
T ss_pred EEEchHhccccChhhHHHHHHHHhC-------CCEEEEEcCCCCCHHH
Confidence 9999997532111000111111111 1237899999999875
No 30
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.60 E-value=1.4e-14 Score=135.85 Aligned_cols=179 Identities=12% Similarity=0.147 Sum_probs=91.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEE--EeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVV--MSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~--~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
..|+|+|++|||||||+|+|++..++ ....|++...... ............ .......+.++...+..+....
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTFH---ENTNTTIGASFCTYVVNLNDINIKNNS--NNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC---SSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC---CCcCccccceeEEEEEEecCccccccc--cccccccccccccccccccccc
Confidence 48999999999999999999998752 2223333222111 111100000000 0000011111111111111111
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc-CCCeEE
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-HDDKIR 354 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~-~~~~ii 354 (545)
............+.|+||||... +..+...++..+|++|+++|+++.........++..+.. .+.|++
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pii 151 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQER-----------YASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIII 151 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGG-----------CTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEE
T ss_pred cccccCccceeEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 11111111124789999999522 112456778999999999999873333444556666654 458999
Q ss_pred EEecCCCCCC----HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVD----TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~----~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|... .+++.+.... . .+..+++||++|.|+++
T Consensus 152 lv~NK~D~~~~~~~~~~~~~~~~~--------~---~~~~~~~Sa~~~~~i~~ 193 (208)
T 3clv_A 152 LVANKIDKNKFQVDILEVQKYAQD--------N---NLLFIQTSAKTGTNIKN 193 (208)
T ss_dssp EEEECTTCC-CCSCHHHHHHHHHH--------T---TCEEEEECTTTCTTHHH
T ss_pred EEEECCCcccccCCHHHHHHHHHH--------c---CCcEEEEecCCCCCHHH
Confidence 9999999321 1222221111 1 23448899999999775
No 31
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.60 E-value=6.1e-15 Score=134.79 Aligned_cols=147 Identities=18% Similarity=0.190 Sum_probs=92.4
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+++|++|||||||+|+|++..+ . ...|+.. .... ...+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~--~--~~~~t~~-~~~~------------------~~~~~~------------- 50 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEV--V--TTIPTIG-FNVE------------------TVTYKN------------- 50 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSC--C--CCCCCSS-EEEE------------------EEEETT-------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC--C--CcCCcCc-cceE------------------EEEECC-------------
Confidence 45899999999999999999998775 2 1222221 1110 000111
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCe
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDK 352 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ 352 (545)
..+.++||||...-. .+...++.++|++++++|++..........++..+.. .+.|
T Consensus 51 ---------~~~~~~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 110 (171)
T 1upt_A 51 ---------LKFQVWDLGGLTSIR-----------PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 110 (171)
T ss_dssp ---------EEEEEEEECCCGGGG-----------GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE
T ss_pred ---------EEEEEEECCCChhhh-----------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE
Confidence 278999999984311 1223457899999999999874434445555555433 4789
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcc-cccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGK-VLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k-~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+..+..++...+ +. ......+..+.+||++|.|+++
T Consensus 111 iilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 111 LVVFANKQDMEQAMTSSEMANSL----GLPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHH----TGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred EEEEEECCCCcCCCCHHHHHHHh----CchhccCCceEEEECcCCCCcCHHH
Confidence 99999999998642222222222 11 1112233458899999999775
No 32
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.59 E-value=1.3e-15 Score=162.00 Aligned_cols=151 Identities=17% Similarity=0.291 Sum_probs=90.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.|+|+|++|||||||+|+|+|... +++++.|.+|+...... ..+.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~T~d~~~~~-----------------~~~~~-------------- 50 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERI--SIVEDTPGVTRDRIYSS-----------------AEWLN-------------- 50 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEEC--C-----------CEEEE-----------------CTTCS--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCCccceEEEE-----------------EEECC--------------
Confidence 6899999999999999999999987 77888777766554311 11112
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..+.++||||+...... +... +...+..++.++|++|+++|+.. +.+.....+.+.++..+.|+++|+
T Consensus 51 --------~~~~l~DT~G~~~~~~~-~~~~--~~~~~~~~~~~ad~il~vvD~~~-~~~~~d~~~~~~l~~~~~pvilv~ 118 (436)
T 2hjg_A 51 --------YDFNLIDTGGIDIGDEP-FLAQ--IRQQAEIAMDEADVIIFMVNGRE-GVTAADEEVAKILYRTKKPVVLAV 118 (436)
T ss_dssp --------SCCEEEC---------C-HHHH--HHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHTTCCSCEEEEE
T ss_pred --------ceEEEEECCCCCCcchh-HHHH--HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEE
Confidence 27899999999632111 1111 22345667899999999999987 556666677777888889999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+.+... .... ++. ++..++ +++||.+|.|+.+
T Consensus 119 NK~D~~~~~~--~~~~--~~~----lg~~~~--~~iSA~~g~gv~~ 154 (436)
T 2hjg_A 119 NKLDNTEMRA--NIYD--FYS----LGFGEP--YPISGTHGLGLGD 154 (436)
T ss_dssp ECCCC-------CCCS--SGG----GSSCCC--EECBTTTTBTHHH
T ss_pred ECccCccchh--hHHH--HHH----cCCCCe--EEEeCcCCCChHH
Confidence 9999875321 0000 011 123344 8999999999876
No 33
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.59 E-value=3.1e-15 Score=140.54 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=93.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.|+|+|.+|||||||+|+|++..+ ..+...|+.. ..... .. ..+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~~t~~-~~~~~--------------~~----~~~-------------- 62 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQS--SSKHITATVG-YNVET--------------FE----KGR-------------- 62 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC------CCCCCSS-EEEEE--------------EE----ETT--------------
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--cccccccccc-eeEEE--------------EE----eCC--------------
Confidence 4899999999999999999999886 3322233222 11110 00 001
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC--------
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH-------- 349 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~-------- 349 (545)
..+.|+||||...- ..+...++.++|++|+++|+++.........++..+...
T Consensus 63 --------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 123 (199)
T 4bas_A 63 --------VAFTVFDMGGAKKF-----------RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELP 123 (199)
T ss_dssp --------EEEEEEEECCSGGG-----------GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCT
T ss_pred --------EEEEEEECCCCHhH-----------HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhccc
Confidence 27889999998431 112334578999999999999744344555666665443
Q ss_pred ---CCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 350 ---DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 350 ---~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+.|+++|+||+|+.+.....++...+. +........+..+.+||++|.|+++
T Consensus 124 ~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (199)
T 4bas_A 124 GGGRVPFLFFANKMDAAGAKTAAELVEILD--LTTLMGDHPFVIFASNGLKGTGVHE 178 (199)
T ss_dssp TSCBCCEEEEEECTTSTTCCCHHHHHHHHT--HHHHHTTSCEEEEECBTTTTBTHHH
T ss_pred ccCCCCEEEEEECcCCCCCCCHHHHHHHhc--chhhccCCeeEEEEeeCCCccCHHH
Confidence 789999999999986522222222220 0011011234458899999999875
No 34
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.59 E-value=2.1e-15 Score=142.77 Aligned_cols=161 Identities=20% Similarity=0.206 Sum_probs=93.6
Q ss_pred CcccccccccCc-eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcc
Q 009050 187 PLLTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLT 265 (545)
Q Consensus 187 ~~l~~~~~~~~~-~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~ 265 (545)
+++++.++..+. .|+++|++|||||||+|+|++..+ ....+....+...+. +.+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~--~~~~~t~~~~~~~~~---------------------~~~-- 68 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRL--GQHVPTLHPTSEELT---------------------IAG-- 68 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC--------CCCCCSCEEEE---------------------ETT--
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCC--CccCCCCCceeEEEE---------------------ECC--
Confidence 456677776655 899999999999999999998765 222221111111110 111
Q ss_pred cccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHH
Q 009050 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITS 345 (545)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~ 345 (545)
..+.++||||...-. .+...++..+|++++++|+++.....+...++..
T Consensus 69 --------------------~~l~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~ 117 (198)
T 1f6b_A 69 --------------------MTFTTFDLGGHIQAR-----------RVWKNYLPAINGIVFLVDCADHERLLESKEELDS 117 (198)
T ss_dssp --------------------EEEEEEEECC----C-----------CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHH
T ss_pred --------------------EEEEEEECCCcHhhH-----------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 178899999973210 0223457899999999999874434445556655
Q ss_pred Hhc----CCCeEEEEecCCCCCC---HHHHHHHHHHHHHHhccc---cc---CCccEEEEeeccCCCccCc
Q 009050 346 LRG----HDDKIRVVLNKADQVD---TQQLMRVYGALMWSLGKV---LN---TPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 346 L~~----~~~~iiiVlNK~D~~~---~~~l~~v~~~l~~~l~k~---~~---~~~v~~v~iSa~~~~~~~~ 403 (545)
+.. .+.|+++|.||+|+.+ .+++.+..+......++. +. ......+.+||++|.|+++
T Consensus 118 ~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 188 (198)
T 1f6b_A 118 LMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188 (198)
T ss_dssp HHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHH
T ss_pred HHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHH
Confidence 533 4689999999999974 233222111000000000 00 1233458899999999875
No 35
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.59 E-value=5.2e-15 Score=165.03 Aligned_cols=226 Identities=15% Similarity=0.175 Sum_probs=131.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCccccccc--chh-
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTA--FLS- 273 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~--~~~- 273 (545)
.|.|+|+|.+|+|||||+|+|+|..+ .+++..++|.+..++........+. .... ..-..+..+... .+.
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~--LP~g~g~~Tr~Pl~l~l~~~~~~~~----~~l~-~~~~~~~~~~~v~~~I~~ 123 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDF--LPRGSGIVTRRPLVLQLVNSTTEYA----EFLH-CKGKKFTDFEEVRLEIEA 123 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCC--SCCSSSCSCSSCEEEEEEECSSCEE----ECST-TTTCCBCCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCc--cCcCCccccccceEEEeecCCcchh----heec-cCCcccCCHHHHHHHHHH
Confidence 47999999999999999999999987 6777777776665543322111000 0000 000000000000 000
Q ss_pred ---hh-----------hhhcCchhhccCceeecCCCCCChh--------hhhhhhccChHHHHHHHh-cCCCEEEEEeCC
Q 009050 274 ---KF-----------ECSQMPHSLLEHITLVDTPGVLSGE--------KQRTQRAYDFTGVTSWFA-AKCDLILLLFDP 330 (545)
Q Consensus 274 ---~~-----------~~~~~~~~lL~~v~liDTPG~~sge--------kq~v~~~~~~~~ia~~~~-~~aDliLlvlD~ 330 (545)
.. .......+-..++.|+||||+.+.. +..+. .++..++ ..+|++|+++|+
T Consensus 124 ~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~------~lv~~yi~~~aDlIL~VVDA 197 (772)
T 3zvr_A 124 ETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIR------DMLMQFVTKENCLILAVSPA 197 (772)
T ss_dssp HHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHH------HHHHHHHTSTTEEEEEEEET
T ss_pred HHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHH------HHHHHHHhcCCcEEEEEEcC
Confidence 00 0001112233478999999998721 11222 2344444 689999999999
Q ss_pred CCCCccHHH-HHHHHHHhcCCCeEEEEecCCCCCCHHHH-HHHHHHHHHHhccccc--CCccEEEEeeccCCCccCcc--
Q 009050 331 HKLDISDEF-KRVITSLRGHDDKIRVVLNKADQVDTQQL-MRVYGALMWSLGKVLN--TPEVVRVYIGSFNDKPVNES-- 404 (545)
Q Consensus 331 ~~~~~~~~~-~~~l~~L~~~~~~iiiVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~--~~~v~~v~iSa~~~~~~~~~-- 404 (545)
+. +..... ..+++.+...+.|+++|+||+|+++.... ..+.. ++... ......+++||.+|.|+++.
T Consensus 198 s~-~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~------~~~~~l~lg~~~VV~iSA~~G~GvdeL~e 270 (772)
T 3zvr_A 198 NS-DLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLE------NKLLPLRRGYIGVVNRSQKDIDGKKDITA 270 (772)
T ss_dssp TS-CSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHT------TCSSCCSSCEEECCCCCCEESSSSEEHHH
T ss_pred CC-CcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHH------HHhhhhhccCCceEEecccccccchhHHH
Confidence 86 333333 37888888889999999999999865321 11110 12211 11123378999999998761
Q ss_pred ---c---CCCccHHh------------hHHHHHHHHHHHhhchhH----------HHHHHHHHHHH
Q 009050 405 ---A---FGPLGKEL------------FEKEQDDLLSDLKDIPKK----------ACDRRINEFVK 442 (545)
Q Consensus 405 ---~---~~~~~~~~------------f~~e~e~ll~~l~~~~~~----------~~~~~i~~~~~ 442 (545)
. +++.++++ =+--++.++.++++++|| ++.+.+++|.+
T Consensus 271 aI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~ 336 (772)
T 3zvr_A 271 ALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKN 336 (772)
T ss_dssp HHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCC
Confidence 0 11111110 011137889999999999 88888888865
No 36
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.59 E-value=1.4e-14 Score=131.57 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=92.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|++++..+ . ...|+....... ..+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~--~--~~~~t~~~~~~~-------------------~~~~~--------------- 43 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI--V--TTIPTIGFNVET-------------------VEYKN--------------- 43 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS--S--CCCCCSSCCEEE-------------------EECSS---------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc--C--cccCcCceeEEE-------------------EEECC---------------
Confidence 589999999999999999998775 2 223322211000 00011
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ii 354 (545)
..+.++||||... +..+...++.++|++++++|+++.........++..+.. .+.|++
T Consensus 44 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 105 (164)
T 1r8s_A 44 -------ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 105 (164)
T ss_dssp -------CEEEEEECCCCGG-----------GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE
T ss_pred -------EEEEEEEcCCChh-----------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEE
Confidence 2789999999832 222455678999999999999874333445556665543 368999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.....++...+ +.. ........+.+||++|.|+++
T Consensus 106 lv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~ 151 (164)
T 1r8s_A 106 VFANKQDLPNAMNAAEITDKL----GLHSLRHRNWYIQATCATSGDGLYE 151 (164)
T ss_dssp EEEECTTSTTCCCHHHHHHHT----TGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred EEEECcCCcCCCCHHHHHHHh----CcccccCccEEEEEcccCCCcCHHH
Confidence 999999997642222222221 211 112233457899999999775
No 37
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.58 E-value=4.6e-15 Score=158.76 Aligned_cols=160 Identities=16% Similarity=0.257 Sum_probs=102.2
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+++|.+|+|||||+|+|+|.+. ..++..++|++..+.. .+.+.+
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~--~~~~~~~gtt~~~~~~-----------------~~~~~~------------- 242 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEER--VIVSNVAGTTRDAVDT-----------------SFTYNQ------------- 242 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTT--EEECC------CTTSE-----------------EEEETT-------------
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCc--cccCCCCCeEEEEEEE-----------------EEEECC-------------
Confidence 34899999999999999999999876 6677766665433100 000111
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccC-hHHH-HHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYD-FTGV-TSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR 354 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~-~~~i-a~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ii 354 (545)
..+.||||||+....+ +....+ |..+ +..++..+|++|+++|++. ++.+....++..+...+.|++
T Consensus 243 ---------~~~~l~DT~G~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~llviD~~~-~~~~~~~~~~~~~~~~~~~~i 310 (456)
T 4dcu_A 243 ---------QEFVIVDTAGMRKKGK--VYETTEKYSVLRALKAIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEAGKAVV 310 (456)
T ss_dssp ---------EEEEETTGGGTTTBTT--BCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEE
T ss_pred ---------ceEEEEECCCCCcCcc--cchHHHHHHHHHHHHHHhhCCEEEEEEeCCC-CcCHHHHHHHHHHHHcCCCEE
Confidence 2688999999865210 100001 1111 2345789999999999987 677888888888888889999
Q ss_pred EEecCCCCCCHH--HHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQ--QLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~--~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.. ...+....+...+.. ... .+.+++||++|.|+++
T Consensus 311 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~SA~~g~gv~~ 358 (456)
T 4dcu_A 311 IVVNKWDAVDKDESTMKEFEENIRDHFQF-LDY--APILFMSALTKKRIHT 358 (456)
T ss_dssp EEEECGGGSCCCSSHHHHHHHHHHHHCGG-GTT--SCEEECCTTTCTTGGG
T ss_pred EEEEChhcCCCchHHHHHHHHHHHHhccc-CCC--CCEEEEcCCCCcCHHH
Confidence 999999998531 222222222211221 122 3348999999999986
No 38
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=9e-15 Score=136.49 Aligned_cols=146 Identities=11% Similarity=0.138 Sum_probs=90.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|+|++... ..+.+....+...+ .+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~t~~~~~~~~---------------------~~~~-------------- 59 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEV--VHTSPTIGSNVEEI---------------------VINN-------------- 59 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSC--EEEECCSCSSCEEE---------------------EETT--------------
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CcCcCCCccceEEE---------------------EECC--------------
Confidence 4899999999999999999998764 21111000000000 0011
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.++||||...- ..+...++.++|++++++|+++....+....++..+.. .+.|+
T Consensus 60 --------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 120 (187)
T 1zj6_A 60 --------TRFLMWDIGGQESL-----------RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120 (187)
T ss_dssp --------EEEEEEECCC---------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEE
T ss_pred --------EEEEEEECCCCHhH-----------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeE
Confidence 27899999998431 11234567899999999999875444555666666643 47899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+.....++...+ +.. +.......+.+||++|.|+++
T Consensus 121 ilv~NK~Dl~~~~~~~~i~~~~----~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 121 LIFANKQDVKECMTVAEISQFL----KLTSIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp EEEEECTTSTTCCCHHHHHHHH----TGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEECCCCcCCCCHHHHHHHh----ChhhhcCCCcEEEEccCCCCcCHHH
Confidence 9999999997532222222222 111 112234458899999999875
No 39
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.57 E-value=1.2e-15 Score=151.98 Aligned_cols=149 Identities=22% Similarity=0.215 Sum_probs=95.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|+|.. ..++..|+++..... ....+.+
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~---~~~~~~~~~t~~~~~-----------------~~~~~~~-------------- 49 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR---QHVGNWPGVTVEKKE-----------------GIMEYRE-------------- 49 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC---EEEEECTTSSCEEEE-----------------EEEEETT--------------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC---cccCCCCCeEEEeeE-----------------EEEEECC--------------
Confidence 379999999999999999999987 455555544433221 0011111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHh--cCCCEEEEEeCCCCCCccHHHHHHHHHHhcCC-CeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHD-DKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~--~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~-~~ii 354 (545)
..+.++||||+.+-...... ..+++.++ .++|++++++|+++ ......++.++.+.+ .|++
T Consensus 50 --------~~~~l~DtpG~~~~~~~~~~-----~~~~~~~~~~~~~d~vi~v~D~~~---~~~~~~~~~~~~~~~~~p~i 113 (271)
T 3k53_A 50 --------KEFLVVDLPGIYSLTAHSID-----ELIARNFILDGNADVIVDIVDSTC---LMRNLFLTLELFEMEVKNII 113 (271)
T ss_dssp --------EEEEEEECCCCSCCCSSCHH-----HHHHHHHHHTTCCSEEEEEEEGGG---HHHHHHHHHHHHHTTCCSEE
T ss_pred --------ceEEEEeCCCccccccCCHH-----HHHHHHhhhccCCcEEEEEecCCc---chhhHHHHHHHHhcCCCCEE
Confidence 26889999998761110000 11344444 79999999999986 345566667777777 8999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+..........+. +.++ ++.+++||++|.|+++
T Consensus 114 lv~NK~Dl~~~~~~~~~~~~l~----~~lg---~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 114 LVLNKFDLLKKKGAKIDIKKMR----KELG---VPVIPTNAKKGEGVEE 155 (271)
T ss_dssp EEEECHHHHHHHTCCCCHHHHH----HHHS---SCEEECBGGGTBTHHH
T ss_pred EEEEChhcCcccccHHHHHHHH----HHcC---CcEEEEEeCCCCCHHH
Confidence 9999999764321111111221 1112 2347999999999876
No 40
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=1.4e-14 Score=133.66 Aligned_cols=149 Identities=19% Similarity=0.187 Sum_probs=87.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|+|++..+ ......|+++....... ..+.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~~t~~~~~~~~~-----------------~~~~~~------------- 58 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAF--LAGTFISTVGIDFRNKV-----------------LDVDGV------------- 58 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CCCCCCCCCSCEEEEEE-----------------EEETTE-------------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC--CCCCcCCceeeEEEEEE-----------------EEECCE-------------
Confidence 3899999999999999999999885 33333343332221100 000010
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~ii 354 (545)
-..+.++||||... +..+...++.++|++++++|++.....+....++..+. ..+.|++
T Consensus 59 -------~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 120 (180)
T 2g6b_A 59 -------KVKLQMWDTAGQER-----------FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM 120 (180)
T ss_dssp -------EEEEEEEECCCC-------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred -------EEEEEEEeCCCcHH-----------HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 02688999999642 11133455789999999999987322233344555443 3578999
Q ss_pred EEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+...+. +....+. +..+ +..+.+||++|.|+++
T Consensus 121 lv~nK~Dl~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 121 LLGNKVDSAHERVVKREDGEKLA----KEYG---LPFMETSAKTGLNVDL 163 (180)
T ss_dssp EEEECCSTTSCCCSCHHHHHHHH----HHHT---CCEEECCTTTCTTHHH
T ss_pred EEEECcccCcccccCHHHHHHHH----HHcC---CeEEEEeCCCCCCHHH
Confidence 999999997531110 0111111 1111 2237899999999775
No 41
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.57 E-value=3.8e-15 Score=159.40 Aligned_cols=152 Identities=18% Similarity=0.297 Sum_probs=92.7
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
.+.|+|+|++|||||||+|+|+|... ..+...|.+|+...... ..+.+
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~--~~v~~~~g~t~~~~~~~-----------------~~~~~------------- 70 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERI--SIVEDTPGVTRDRIYSS-----------------AEWLN------------- 70 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEE--C-----------CEEEE-----------------CTTCS-------------
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC--cccCCCCCcceeEEEEE-----------------EEECC-------------
Confidence 46899999999999999999999987 67777776666544311 11112
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiV 356 (545)
..+.++||||+..... .... .+...+..++..+|++|+++|+.. ++......+.+.++..+.|+++|
T Consensus 71 ---------~~~~liDT~G~~~~~~-~~~~--~~~~~~~~~~~~ad~il~VvD~~~-~~~~~d~~l~~~l~~~~~pvilV 137 (456)
T 4dcu_A 71 ---------YDFNLIDTGGIDIGDE-PFLA--QIRQQAEIAMDEADVIIFMVNGRE-GVTAADEEVAKILYRTKKPVVLA 137 (456)
T ss_dssp ---------SCCEEECCCC-------CCHH--HHHHHHHHHHHHCSEEEEEEESSS-CSCHHHHHHHHHHTTCCSCEEEE
T ss_pred ---------ceEEEEECCCCCCcch-HHHH--HHHHHHHhhHhhCCEEEEEEeCCC-CCChHHHHHHHHHHHcCCCEEEE
Confidence 2789999999864211 0111 122356677899999999999986 56777788888888889999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 357 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+||+|+.+... .... ++. .+..++ +++||.+|.|+.+
T Consensus 138 ~NK~D~~~~~~--~~~e--~~~----lg~~~~--~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 138 VNKLDNTEMRA--NIYD--FYS----LGFGEP--YPISGTHGLGLGD 174 (456)
T ss_dssp EECC-----------CC--SGG----GSSSSE--EECCTTTCTTHHH
T ss_pred EECccchhhhh--hHHH--HHH----cCCCce--EEeecccccchHH
Confidence 99999874321 1000 111 223344 7999999998876
No 42
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.56 E-value=1.2e-14 Score=154.65 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=98.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|+||||||||+|+|+|... ..+++.|+||+.... | ...+.|
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~--~~v~~~~gtT~d~~~----------~-------~i~~~g-------------- 227 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKER--ALVSPIPGTTRDPVD----------D-------EVFIDG-------------- 227 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT--EEECCCC------CC----------E-------EEEETT--------------
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcc--cccCCCCCCcCCceE----------E-------EEEECC--------------
Confidence 5899999999999999999999986 678887777654321 0 000111
Q ss_pred hcCchhhccCceeecCCCCCChhh---hhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEK---QRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgek---q~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ii 354 (545)
..+.++||||+..... +.... +... -+...+..+|++++++|+.. +.+.+...+...+...+.+++
T Consensus 228 --------~~~~l~Dt~G~~~~~~~~~~~~e~-~~~~-~~~~~i~~ad~vllv~d~~~-~~~~~~~~i~~~l~~~~~~~i 296 (439)
T 1mky_A 228 --------RKYVFVDTAGLRRKSRVEPRTVEK-YSNY-RVVDSIEKADVVVIVLDATQ-GITRQDQRMAGLMERRGRASV 296 (439)
T ss_dssp --------EEEEESSCSCC-----------CC-SCCH-HHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEE
T ss_pred --------EEEEEEECCCCccccccchhhHHH-HHHH-HHHHHHhhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEE
Confidence 2578999999854111 11111 1111 12345788999999999986 455666667777777889999
Q ss_pred EEecCCCCCCHHH--HHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQ--LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~--l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+... ..++...+...++.. ... +.+++||++|.|+++
T Consensus 297 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~SA~~g~gv~~ 344 (439)
T 1mky_A 297 VVFNKWDLVVHREKRYDEFTKLFREKLYFI-DYS--PLIFTSADKGWNIDR 344 (439)
T ss_dssp EEEECGGGSTTGGGCHHHHHHHHHHHCGGG-TTS--CEEECBTTTTBSHHH
T ss_pred EEEECccCCCchhhHHHHHHHHHHHHhccC-CCC--cEEEEECCCCCCHHH
Confidence 9999999986432 222222222222222 222 338999999999885
No 43
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.56 E-value=3e-14 Score=130.66 Aligned_cols=149 Identities=16% Similarity=0.100 Sum_probs=86.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|++... ..+.+.+.++....... +.+. .
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~--~~~~~~~~~~~~~~~~~-------------------~~~~----~-------- 51 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQE--RDLHEQLGEDVYERTLT-------------------VDGE----D-------- 51 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-------CCCSSSSEEEEEEE-------------------ETTE----E--------
T ss_pred EEEEEECCCCccHHHHHHHHhcCCC--ccccCccccceeEEEEE-------------------ECCE----E--------
Confidence 4799999999999999999999886 44433333332111100 0010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC----CCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH----DDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~----~~~i 353 (545)
..+.++||||....+ +..+...++..+|++++++|.++....+....++..+... +.|+
T Consensus 52 --------~~~~~~D~~g~~~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~pi 114 (175)
T 2nzj_A 52 --------TTLVVVDTWEAEKLD---------KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPI 114 (175)
T ss_dssp --------EEEEEECCC----------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCE
T ss_pred --------EEEEEEecCCCCccc---------hhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCE
Confidence 167899999974311 1124456678999999999998633333444566555543 6899
Q ss_pred EEEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+..++.. ....+. +..+ ...+.+||++|.|+++
T Consensus 115 ilv~NK~Dl~~~~~v~~~~~~~~~----~~~~---~~~~~~Sa~~g~gi~~ 158 (175)
T 2nzj_A 115 ILVGNKADLARCREVSVEEGRACA----VVFD---CKFIETSATLQHNVAE 158 (175)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHHH----HHHT---SEEEECBTTTTBSHHH
T ss_pred EEEEEChhhccccccCHHHHHHHH----HHcC---CeEEEEecCCCCCHHH
Confidence 99999999975321110 011111 1111 2348899999999875
No 44
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.56 E-value=2.4e-15 Score=139.02 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=90.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|+|... ..+++.|+|++..... ...+.+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~--~~~~~~~~~t~~~~~~-----------------~~~~~~-------------- 51 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLRE-----------------HIHIDG-------------- 51 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSTTCCCSCEEE-----------------EEEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--ceeeCCCCceeceeeE-----------------EEEECC--------------
Confidence 4799999999999999999999875 5566666655432210 000111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~ii 354 (545)
..+.++||||+.... ....+ +.+ ..+...+.++|++++++|++.... .+...++..+.. .+.|++
T Consensus 52 --------~~~~l~Dt~G~~~~~-~~~~~-~~~-~~~~~~~~~ad~~i~v~D~~~~~s-~~~~~~~~~~~~~~~~~~p~i 119 (172)
T 2gj8_A 52 --------MPLHIIDTAGLREAS-DEVER-IGI-ERAWQEIEQADRVLFMVDGTTTDA-VDPAEIWPEFIARLPAKLPIT 119 (172)
T ss_dssp --------EEEEEEECCCCSCCS-SHHHH-HHH-HHHHHHHHTCSEEEEEEETTTCCC-CSHHHHCHHHHHHSCTTCCEE
T ss_pred --------eEEEEEECCCcccch-hHHHH-HHH-HHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHHhcccCCCEE
Confidence 157899999986421 00110 000 012234789999999999986322 223344444432 368999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+... ...+ ......+++||++|.|+++
T Consensus 120 lv~NK~Dl~~~~~----------~~~~---~~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 120 VVRNKADITGETL----------GMSE---VNGHALIRLSARTGEGVDV 155 (172)
T ss_dssp EEEECHHHHCCCC----------EEEE---ETTEEEEECCTTTCTTHHH
T ss_pred EEEECccCCcchh----------hhhh---ccCCceEEEeCCCCCCHHH
Confidence 9999999743100 0011 1123448899999999875
No 45
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.56 E-value=5e-15 Score=133.98 Aligned_cols=150 Identities=20% Similarity=0.270 Sum_probs=90.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.|+++|++|||||||+|+|++... ..++..+.++....... ..+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~-----------------~~~~~-------------- 48 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRS--AVVADVPGVTRDLKEGV-----------------VETDR-------------- 48 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------CCEEEE-----------------EEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCe--eeccCCCCceecceEEE-----------------EEeCC--------------
Confidence 4699999999999999999999875 44444444433221100 00001
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..+.++||||...... ... .+......++..+|++++++|++. ........+...+...+.|+++|+
T Consensus 49 --------~~~~l~Dt~G~~~~~~--~~~--~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~p~ilv~ 115 (161)
T 2dyk_A 49 --------GRFLLVDTGGLWSGDK--WEK--KIQEKVDRALEDAEVVLFAVDGRA-ELTQADYEVAEYLRRKGKPVILVA 115 (161)
T ss_dssp --------EEEEEEECGGGCSSSS--CCH--HHHHHHHHHTTTCSEEEEEEESSS-CCCHHHHHHHHHHHHHTCCEEEEE
T ss_pred --------ceEEEEECCCCCCccc--hHH--HHHHHHHHHHHhCCEEEEEEECCC-cccHhHHHHHHHHHhcCCCEEEEE
Confidence 2678999999865210 000 011234556899999999999986 344444455555655678999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+.+.++. ... +. ..+...+ +.+||++|.|+++
T Consensus 116 nK~Dl~~~~~~---~~~----~~-~~~~~~~--~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 116 TKVDDPKHELY---LGP----LY-GLGFGDP--IPTSSEHARGLEE 151 (161)
T ss_dssp ECCCSGGGGGG---CGG----GG-GGSSCSC--EECBTTTTBSHHH
T ss_pred ECcccccchHh---HHH----HH-hCCCCCe--EEEecccCCChHH
Confidence 99999764211 001 11 1222234 7999999999875
No 46
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.56 E-value=2e-14 Score=134.43 Aligned_cols=147 Identities=17% Similarity=0.193 Sum_probs=92.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+ . ....|+.. ..... ....+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~--~-~~~~~t~~-~~~~~------------------~~~~~-------------- 66 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQF--N-EDMIPTVG-FNMRK------------------ITKGN-------------- 66 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--C-CSCCCCCS-EEEEE------------------EEETT--------------
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCC--C-CccCCCCc-eeEEE------------------EEeCC--------------
Confidence 3899999999999999999998775 2 11222211 11100 00001
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.|+||||... |..+...++..+|++++++|++..........++..+.. .+.|+
T Consensus 67 --------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi 127 (188)
T 1zd9_A 67 --------VTIKLWDIGGQPR-----------FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV 127 (188)
T ss_dssp --------EEEEEEEECCSHH-----------HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCE
T ss_pred --------EEEEEEECCCCHh-----------HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCE
Confidence 2788999999732 111345667999999999999874434455556655533 57899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+..+..++...+ +.. .....+..+.+||++|.|+++
T Consensus 128 ilv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 128 LVLGNKRDLPGALDEKELIEKM----NLSAIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp EEEEECTTSTTCCCHHHHHHHT----TGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECCCCccCCCHHHHHHHh----ChhhhccCCeeEEEEECCCCCCHHH
Confidence 9999999997532222222221 111 112334458899999999775
No 47
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=135.85 Aligned_cols=149 Identities=19% Similarity=0.162 Sum_probs=90.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++... ......++.. .... ...+.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~~t~~-~~~~------------------~~~~~~-------------- 66 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNA--QSQNILPTIG-FSIE------------------KFKSSS-------------- 66 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGG--CCSSCCCCSS-EEEE------------------EEECSS--------------
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCCccc-eeEE------------------EEEECC--------------
Confidence 4899999999999999999998872 1222222221 1110 000111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc------CCC
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG------HDD 351 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~------~~~ 351 (545)
..+.++||||...-. .+...++.++|++|+++|++..........++..+.. .+.
T Consensus 67 --------~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 127 (190)
T 2h57_A 67 --------LSFTVFDMSGQGRYR-----------NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRI 127 (190)
T ss_dssp --------CEEEEEEECCSTTTG-----------GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCC
T ss_pred --------EEEEEEECCCCHHHH-----------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCC
Confidence 278999999974311 1223457899999999999863222333445544432 468
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 352 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 352 ~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+++|+||+|+.+.....++...+ .+ ..+....+..+.+||++|.|+++
T Consensus 128 piilv~nK~Dl~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 128 PILFFANKMDLRDAVTSVKVSQLL--CL-ENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp CEEEEEECTTSTTCCCHHHHHHHH--TG-GGCCSSCEEEEECBTTTTBTHHH
T ss_pred eEEEEEeCcCcccCCCHHHHHHHh--Ch-hhccCCceEEEEccCCCCcCHHH
Confidence 999999999997542222222222 11 11112234458899999999775
No 48
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.56 E-value=8.4e-15 Score=136.06 Aligned_cols=147 Identities=12% Similarity=0.161 Sum_probs=91.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|+|++..+ ..+.+.+..+...+. +.+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~~~~~~---------------------~~~-------------- 64 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEV--VHTSPTIGSNVEEIV---------------------INN-------------- 64 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSC--EEEECCSSSSCEEEE---------------------ETT--------------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CccCCcCceeeEEEE---------------------ECC--------------
Confidence 4899999999999999999998774 222221111111110 011
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.++||||...-. .+...++.++|++++++|+++.........++..+.. .+.|+
T Consensus 65 --------~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi 125 (181)
T 2h17_A 65 --------TRFLMWDIGGQESLR-----------SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 125 (181)
T ss_dssp --------EEEEEEEESSSGGGT-----------CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEE
T ss_pred --------EEEEEEECCCCHhHH-----------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeE
Confidence 278999999983210 1223457899999999999874444555556655543 57899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+.....++...+ .+. .........+.+||++|.|+++
T Consensus 126 ilv~NK~Dl~~~~~~~~i~~~~--~~~-~~~~~~~~~~~~Sa~~g~gi~~ 172 (181)
T 2h17_A 126 LIFANKQDVKECMTVAEISQFL--KLT-SIKDHQWHIQACCALTGEGLCQ 172 (181)
T ss_dssp EEEEECTTSTTCCCHHHHHHHT--TGG-GCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEECCCcccCCCHHHHHHHh--Ccc-cccCCceEEEEccCCCCcCHHH
Confidence 9999999997632122222211 001 1111233458899999999775
No 49
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.55 E-value=6.2e-15 Score=134.21 Aligned_cols=146 Identities=16% Similarity=0.105 Sum_probs=79.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|+|+|... ..+++.+.++....... .+- .
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~--------------------~~~---~--------- 48 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVV--------------------DGE---E--------- 48 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC------------CEEEEEEEE--------------------TTE---E---------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccc--cCCCCccccceEEEEEE--------------------CCE---E---------
Confidence 3699999999999999999998876 44555444443322110 010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.++||||.... ..+...++..+|++++++|.++....+....++..+.. .+.|+
T Consensus 49 --------~~~~i~D~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 109 (166)
T 3q72_A 49 --------ASLMVYDIWEQDGG-----------RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI 109 (166)
T ss_dssp --------EEEEEEECC--------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCE
T ss_pred --------EEEEEEECCCCccc-----------hhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 26789999997431 11334567899999999999874333444556555543 36799
Q ss_pred EEEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+..++.. ....+ .+..+ .+.+.+||++|.|+++
T Consensus 110 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 110 ILVGNKSDLVRSREVSVDEGRAC----AVVFD---CKFIETSAALHHNVQA 153 (166)
T ss_dssp EEEEECTTCCSSCCSCHHHHHHH----HHHTT---CEEEECBGGGTBSHHH
T ss_pred EEEEeccccccccccCHHHHHHH----HHHhC---CcEEEeccCCCCCHHH
Confidence 99999999875321111 01111 11111 2347899999999875
No 50
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.55 E-value=1.3e-14 Score=135.11 Aligned_cols=146 Identities=18% Similarity=0.227 Sum_probs=91.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||+|+|++..+ ..+.+.+ |.+.. ...+.+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~--~~~~~t~------------------g~~~~---~~~~~~-------------- 59 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDI--SHITPTQ------------------GFNIK---SVQSQG-------------- 59 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCC--EEEEEET------------------TEEEE---EEEETT--------------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CcccCcC------------------CeEEE---EEEECC--------------
Confidence 4899999999999999999998764 2211111 11110 000111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.++||||... +......++..+|++++++|++......+...++..+.. .+.|+
T Consensus 60 --------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 120 (181)
T 1fzq_A 60 --------FKLNVWDIGGQRK-----------IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120 (181)
T ss_dssp --------EEEEEEECSSCGG-----------GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCE
T ss_pred --------EEEEEEECCCCHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCE
Confidence 2788999999732 122345668999999999999874333444455555432 46899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+.+.....++...+ +.. ........+.+||++|.|+++
T Consensus 121 ilv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 121 LIFANKQDLLTAAPASEIAEGL----NLHTIRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp EEEEECTTSTTCCCHHHHHHHT----TGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECcCcccCCCHHHHHHHh----CchhccCCceEEEEccCCCCCCHHH
Confidence 9999999997542222222221 111 112233457899999999875
No 51
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.55 E-value=1.2e-14 Score=135.28 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=91.8
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+++|++|||||||+|++++... .... |+.. .... ...+.+
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~--~t~~-~~~~------------------~~~~~~------------- 61 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGEDV--DTIS--PTLG-FNIK------------------TLEHRG------------- 61 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCC--SSCC--CCSS-EEEE------------------EEEETT-------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC--Cccc--ccCc-cceE------------------EEEECC-------------
Confidence 34899999999999999999998663 2222 2211 1110 000011
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCe
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDK 352 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ 352 (545)
..+.++||||... . ..+...++.++|++++++|+++....++...++..+.. .+.|
T Consensus 62 ---------~~~~~~Dt~G~~~---~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 121 (186)
T 1ksh_A 62 ---------FKLNIWDVGGQKS---L--------RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121 (186)
T ss_dssp ---------EEEEEEEECCSHH---H--------HTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE
T ss_pred ---------EEEEEEECCCCHh---H--------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc
Confidence 2789999999832 1 11223457899999999999874434455556655533 4689
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+.....++...+ .+. ......+..+.+||++|.|+++
T Consensus 122 iilv~nK~Dl~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~Sa~~~~gi~~ 169 (186)
T 1ksh_A 122 LLIFANKQDLPGALSCNAIQEAL--ELD-SIRSHHWRIQGCSAVTGEDLLP 169 (186)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHT--TGG-GCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEEeCccCCCCCCHHHHHHHh--Chh-hccCCceEEEEeeCCCCCCHHH
Confidence 99999999997643222222222 011 1112234558899999999775
No 52
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.55 E-value=4e-14 Score=136.84 Aligned_cols=161 Identities=17% Similarity=0.224 Sum_probs=92.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.|+|+|.+|||||||+|+|++..+ .+++.+.+++...... ..+.+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~---~~~~~~~~t~~~~~~~-----------------~~~~~-------------- 75 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANV---DVQSYSFTTKNLYVGH-----------------FDHKL-------------- 75 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCE---EEECC-----CEEEEE-----------------EEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCCcceeeeeee-----------------eecCC--------------
Confidence 4899999999999999999999874 2344444433322100 00001
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCc-c-HHHHHHHHHHhcC--CCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDI-S-DEFKRVITSLRGH--DDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~-~-~~~~~~l~~L~~~--~~~i 353 (545)
..+.|+||||..+....... ...+. ....+...+|++|+++|++.... . .....++..+... +.|+
T Consensus 76 --------~~~~l~DtpG~~~~~~~~~~-~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~pi 145 (228)
T 2qu8_A 76 --------NKYQIIDTPGLLDRAFENRN-TIEMT-TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSI 145 (228)
T ss_dssp --------EEEEEEECTTTTTSCGGGCC-HHHHH-HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCE
T ss_pred --------CeEEEEECCCCcCcccchhh-hHHHH-HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcE
Confidence 26889999999652110000 00011 12334688999999999986321 1 3345677777765 7899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+..++..........+.+... .....+.+||++|.|+++
T Consensus 146 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~ 194 (228)
T 2qu8_A 146 VIGFNKIDKCNMDSLSIDNKLLIKQILDNVK-NPIKFSSFSTLTGVGVEQ 194 (228)
T ss_dssp EEEEECGGGCC--CCCHHHHHHHHHHHHHCC-SCEEEEECCTTTCTTHHH
T ss_pred EEEEeCcccCCchhhHHHHHHHHHHHHHhcC-CCceEEEEecccCCCHHH
Confidence 9999999998643221111111111111111 113448899999999875
No 53
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.55 E-value=1.5e-14 Score=133.19 Aligned_cols=149 Identities=16% Similarity=0.260 Sum_probs=92.7
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
.+.|+++|.+|||||||+|+|++..+ ..+..++++..... .. ..+.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~~~~-----------~~------~~~~~------------- 54 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKV---TEQEAGGITQHIGA-----------YQ------VTVND------------- 54 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCS---SCSSCCSSSTTCCC-----------CE------EEETT-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc---ccCCCCceeEeeeE-----------EE------EEeCC-------------
Confidence 34899999999999999999999875 22222222211000 00 00011
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiV 356 (545)
..+.++||||...-.. +....+..+|++++++|++. ....+..+.+..+...+.|+++|
T Consensus 55 ---------~~~~l~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~l~~~~~~~~p~ilv 113 (178)
T 2lkc_A 55 ---------KKITFLDTPGHEAFTT-----------MRARGAQVTDIVILVVAADD-GVMPQTVEAINHAKAANVPIIVA 113 (178)
T ss_dssp ---------EEEEESCCCSSSSSSC-----------SCCSSCCCCCEEEEEEETTC-CCCHHHHHHHHHHGGGSCCEEEE
T ss_pred ---------ceEEEEECCCCHHHHH-----------HHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHhCCCCEEEE
Confidence 2678999999743111 11123688999999999886 34566667777777778899999
Q ss_pred ecCCCCCCH--HHHHHHHHHHHHHhcccccC--CccEEEEeeccCCCccCc
Q 009050 357 LNKADQVDT--QQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~~--~~l~~v~~~l~~~l~k~~~~--~~v~~v~iSa~~~~~~~~ 403 (545)
+||+|+.+. +++..... ........ ..+..+++||++|.|+++
T Consensus 114 ~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 160 (178)
T 2lkc_A 114 INKMDKPEANPDRVMQELM----EYNLVPEEWGGDTIFCKLSAKTKEGLDH 160 (178)
T ss_dssp EETTTSSCSCHHHHHHHHT----TTTCCBTTTTSSEEEEECCSSSSHHHHH
T ss_pred EECccCCcCCHHHHHHHHH----hcCcChhHcCCcccEEEEecCCCCCHHH
Confidence 999999853 22222111 11111111 113458899999998775
No 54
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.54 E-value=1.6e-14 Score=143.98 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=48.7
Q ss_pred CCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCC
Q 009050 320 KCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDK 399 (545)
Q Consensus 320 ~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~ 399 (545)
++|++++++|+...++......+++.+.. +.|+++|+||+|+....++......+...+.. ..+..+.+||.++.
T Consensus 115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~----~~i~v~~~sa~~~~ 189 (274)
T 3t5d_A 115 RVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQE----HKIKIYEFPETDDE 189 (274)
T ss_dssp CCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHH----TTCCCCCC------
T ss_pred ceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHH----cCCeEEcCCCCCCh
Confidence 47899998877765677888889998887 78999999999999877765554444322221 12222568888888
Q ss_pred ccCc
Q 009050 400 PVNE 403 (545)
Q Consensus 400 ~~~~ 403 (545)
++.+
T Consensus 190 ~~~~ 193 (274)
T 3t5d_A 190 EENK 193 (274)
T ss_dssp ----
T ss_pred hHHH
Confidence 8765
No 55
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.54 E-value=1.2e-13 Score=130.33 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=90.4
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccc-eEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDR-FVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r-~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
...|+|+|++|||||||+|+|++..+. . ...++... .... + ..+.+- .
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~-~~~~t~~~~~~~~------------~------~~~~~~----~------ 56 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFT--P-AFVSTVGIDFKVK------------T------IYRNDK----R------ 56 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--S-CCCCCCSEEEEEE------------E------EEETTE----E------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC--C-CcCCccceeEEEE------------E------EEECCe----E------
Confidence 348999999999999999999998752 1 11121110 1000 0 000000 0
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCe
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDK 352 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~ 352 (545)
..+.|+||||... +..+...++.++|++|+++|++.....+....++..+.. .+.|
T Consensus 57 ----------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 115 (203)
T 1zbd_A 57 ----------IKLQIWDTAGLER-----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ 115 (203)
T ss_dssp ----------EEEEEEEECCSGG-----------GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE
T ss_pred ----------EEEEEEECCCchh-----------hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2688999999732 222455668999999999999873323344556665543 4689
Q ss_pred EEEEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+...+ .+....+. +..+ +..+.+||++|.|+++
T Consensus 116 iilv~nK~Dl~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 116 VLLVGNKCDMEDERVVSSERGRQLA----DHLG---FEFFEASAKDNINVKQ 160 (203)
T ss_dssp EEEEEECTTCTTSCCSCHHHHHHHH----HHHT---CEEEECBTTTTBSSHH
T ss_pred EEEEEECcccCcccccCHHHHHHHH----HHCC---CeEEEEECCCCCCHHH
Confidence 9999999999753111 01111111 1111 2348899999999875
No 56
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=3.3e-14 Score=129.69 Aligned_cols=147 Identities=16% Similarity=0.228 Sum_probs=86.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||+|+|++..+.. ...|+....... .. ...+ .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~------------~~------~~~~-----~-------- 49 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRE---SYIPTVEDTYRQ------------VI------SCDK-----S-------- 49 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCS---SCCCCSCEEEEE------------EE------EETT-----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCCccccEEE------------EE------EECC-----E--------
Confidence 379999999999999999999877521 111211110000 00 0000 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc-----CCCe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-----HDDK 352 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~-----~~~~ 352 (545)
...+.++||||... +..+...++..+|++++++|+++....+....++..+.+ .+.|
T Consensus 50 -------~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p 111 (172)
T 2erx_A 50 -------ICTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP 111 (172)
T ss_dssp -------EEEEEEEECCSCSS-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC
T ss_pred -------EEEEEEEECCCchh-----------hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 02688999999753 122445667889999999999863222333344444432 3679
Q ss_pred EEEEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+..++.. ....+ .+..+ +..+++||++|.|+++
T Consensus 112 ii~v~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 112 IMLVGNKCDESPSREVQSSEAEAL----ARTWK---CAFMETSAKLNHNVKE 156 (172)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHH----HHHHT---CEEEECBTTTTBSHHH
T ss_pred EEEEEEccccccccccCHHHHHHH----HHHhC---CeEEEecCCCCcCHHH
Confidence 999999999864322111 01111 11111 2347899999999875
No 57
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.54 E-value=1.8e-14 Score=146.23 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=53.3
Q ss_pred cCceeecCCCCCChhh----hhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccH-HHHHHHHHHhcCCCeEEEEecCC
Q 009050 286 EHITLVDTPGVLSGEK----QRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISD-EFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 286 ~~v~liDTPG~~sgek----q~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~-~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
.++.|+||||+..... ..+.+ .+...+..++.++|++++++|+...+... +...+++.+...+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQ--QIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHH--HHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHH--HHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 4799999999975210 11111 12335677889999999999974323332 23467777877889999999999
Q ss_pred CCCCH
Q 009050 361 DQVDT 365 (545)
Q Consensus 361 D~~~~ 365 (545)
|+.+.
T Consensus 209 Dl~~~ 213 (315)
T 1jwy_B 209 DLMDK 213 (315)
T ss_dssp TSSCS
T ss_pred ccCCc
Confidence 99864
No 58
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.54 E-value=2e-14 Score=136.60 Aligned_cols=148 Identities=18% Similarity=0.211 Sum_probs=88.7
Q ss_pred cccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchh
Q 009050 194 FDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLS 273 (545)
Q Consensus 194 ~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~ 273 (545)
......|+|+|++|||||||+|+|++..+ .....|+++...... .+.+.+.
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~--------- 67 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKF---NPSFITTIGIDFKIK-----------------TVDINGK--------- 67 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCC---CCSSSCCCSCCEEEE-----------------EEEETTE---------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCC---CcccCCcccceEEEE-----------------EEEECCE---------
Confidence 34445899999999999999999998874 222223322211100 0000110
Q ss_pred hhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCC
Q 009050 274 KFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHD 350 (545)
Q Consensus 274 ~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~ 350 (545)
-..+.|+||||...- ..+...++..+|++++++|++.....+....++..+. ..+
T Consensus 68 -----------~~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 125 (213)
T 3cph_A 68 -----------KVKLQLWDTAGQERF-----------RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE 125 (213)
T ss_dssp -----------EEEEEEECCTTGGGG-----------TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC
T ss_pred -----------EEEEEEEeCCCcHHH-----------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 016889999996321 1123456789999999999986322233344555443 346
Q ss_pred CeEEEEecCCCCCCH----HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 351 DKIRVVLNKADQVDT----QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~----~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.|+++|+||+|+... ++..+.... . +. +.+++||++|.|+++
T Consensus 126 ~piilv~nK~Dl~~~~~~~~~~~~~~~~----~----~~---~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 126 AQLLLVGNKSDMETRVVTADQGEALAKE----L----GI---PFIESSAKNDDNVNE 171 (213)
T ss_dssp SEEEEEEECTTCSSCCSCHHHHHHHHHH----H----TC---CEEECBTTTTBSSHH
T ss_pred CCEEEEEECCCCcccccCHHHHHHHHHH----c----CC---EEEEEeCCCCCCHHH
Confidence 899999999998532 222222111 1 11 238999999999875
No 59
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.54 E-value=2.4e-14 Score=134.05 Aligned_cols=148 Identities=16% Similarity=0.211 Sum_probs=90.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|++... .....++++....... ..+.+- .
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~~----~-------- 64 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTY---TESYISTIGVDFKIRT-----------------IELDGK----T-------- 64 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC---CSCCCCCSSEEEEEEE-----------------EEETTE----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCcccceEEEEE-----------------EEECCE----E--------
Confidence 4899999999999999999999874 2233333332221100 000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~ii 354 (545)
..+.|+||||... +..+...++..+|++++++|+++....+....++..+. ..+.|++
T Consensus 65 --------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i 125 (196)
T 3tkl_A 65 --------IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 125 (196)
T ss_dssp --------EEEEEEEECCSGG-----------GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEECCCcHh-----------hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 1688999999632 11134567899999999999987332233444544443 3478999
Q ss_pred EEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+...+. .....+. +..+ +..+.+||++|.|+++
T Consensus 126 lv~nK~Dl~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 126 LVGNKCDLTTKKVVDYTTAKEFA----DSLG---IPFLETSAKNATNVEQ 168 (196)
T ss_dssp EEEECTTCTTTCCSCHHHHHHHH----HHTT---CCEEEECTTTCTTHHH
T ss_pred EEEECcccccccccCHHHHHHHH----HHcC---CcEEEEeCCCCCCHHH
Confidence 999999997542111 0111111 1111 2337899999999875
No 60
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.54 E-value=9.9e-14 Score=129.21 Aligned_cols=151 Identities=21% Similarity=0.202 Sum_probs=91.0
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceE----EEEeCCCccccCCceeEeecCCCCCCcccccccch
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFV----VVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFL 272 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~----i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~ 272 (545)
...|+|+|++|||||||+|+|++..+. ....++..... .+... +.. .+....+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~-------~~~---------~~~~~~~~--- 68 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFN---SKFITTVGIDFREKRVVYRA-------NGP---------DGAVGRGQ--- 68 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC---CSCCCCCSEEEEEEEEEECT-------TSC---------CCSSCCCE---
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC---cCcccccceeeeeEEEEEec-------CCc---------ccccccCc---
Confidence 348999999999999999999987752 11122221111 11000 000 00000000
Q ss_pred hhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----
Q 009050 273 SKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---- 348 (545)
Q Consensus 273 ~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---- 348 (545)
-..+.++||||... +..+...++.++|++|+++|++..........++..+..
T Consensus 69 ------------~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 125 (195)
T 3bc1_A 69 ------------RIHLQLWDTAGLER-----------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS 125 (195)
T ss_dssp ------------EEEEEEEEECCSGG-----------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS
T ss_pred ------------EEEEEEEeCCCcHH-----------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 02788999999832 222456678999999999999873333334455555543
Q ss_pred CCCeEEEEecCCCCCCH-----HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 349 HDDKIRVVLNKADQVDT-----QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 349 ~~~~iiiVlNK~D~~~~-----~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.+.|+++|+||+|+.+. +++.+.... . + +..+.+||++|.|+++
T Consensus 126 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~----~---~~~~~~Sa~~~~~v~~ 174 (195)
T 3bc1_A 126 ENPDIVLCGNKSDLEDQRAVKEEEARELAEK----Y----G---IPYFETSAANGTNISH 174 (195)
T ss_dssp SSCCEEEEEECTTCGGGCCSCHHHHHHHHHH----H----T---CCEEECCTTTCTTHHH
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHH----c----C---CCEEEEECCCCCCHHH
Confidence 46899999999998642 222222111 1 1 2337999999999775
No 61
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.53 E-value=4.8e-14 Score=131.75 Aligned_cols=148 Identities=18% Similarity=0.141 Sum_probs=89.1
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcc--cceEEEEeCCCccccCCceeEeecCCCCCCcccccccchh
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTT--DRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLS 273 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t--~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~ 273 (545)
....|+|+|++|||||||+|+|++..+. . ...++. +...... .+.+ ..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~-~~~~t~~~~~~~~~~-------------------~~~~----~~---- 70 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFT--P-AFVSTVGIDFKVKTV-------------------YRHD----KR---- 70 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--C-SCCCCCCCEEEEEEE-------------------EETT----EE----
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--C-CcCCceeEEEEEEEE-------------------EECC----eE----
Confidence 3458999999999999999999998752 1 111111 1111000 0000 00
Q ss_pred hhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CC
Q 009050 274 KFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HD 350 (545)
Q Consensus 274 ~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~ 350 (545)
..+.++||||...-. .+...++..+|++|+++|+++....+....++..+.. .+
T Consensus 71 ------------~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 127 (189)
T 2gf9_A 71 ------------IKLQIWDTAGQERYR-----------TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN 127 (189)
T ss_dssp ------------EEEEEEECCSCCSSC-----------CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred ------------EEEEEEeCCCcHHHh-----------hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 268899999974311 1223457899999999999863323334455655544 46
Q ss_pred CeEEEEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 351 DKIRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.|+++|+||+|+.+...+ .+....+.... + +..+.+||++|.|+++
T Consensus 128 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~---~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 128 AQVILVGNKCDLEDERVVPAEDGRRLADDL----G---FEFFEASAKENINVKQ 174 (189)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHH----T---CEEEECBTTTTBSHHH
T ss_pred CCEEEEEECcccccccCCCHHHHHHHHHHc----C---CeEEEEECCCCCCHHH
Confidence 899999999998753111 01111111111 1 2348999999999875
No 62
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.53 E-value=4.1e-14 Score=128.56 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=87.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+|+|++..++ ....|++ ...... ...+.+- .
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~~---~~~~~t~-~~~~~~-----------------~~~~~~~----~--------- 50 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIFV---EKYDPTI-EDSYRK-----------------QVEVDCQ----Q--------- 50 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCC---CSCCCCS-EEEEEE-----------------EEESSSC----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---CCCCCCc-cceEEE-----------------EEEECCE----E---------
Confidence 6999999999999999999987641 1112222 111100 0000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~ii 354 (545)
..+.++||||.... ..+...++.++|++++++|.+.....+....++..+. ..+.|++
T Consensus 51 -------~~~~l~D~~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 112 (167)
T 1c1y_A 51 -------CMLEILDTAGTEQF-----------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI 112 (167)
T ss_dssp -------EEEEEEEECSSCSS-----------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEE
T ss_pred -------EEEEEEECCChHHH-----------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEE
Confidence 26889999997431 1134556788999999999986322223334444332 3478999
Q ss_pred EEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+...+ .+....+ .+.. .....+++||++|.|+++
T Consensus 113 lv~nK~Dl~~~~~~~~~~~~~~----~~~~--~~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 113 LVGNKCDLEDERVVGKEQGQNL----ARQW--CNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EEEECTTCGGGCCSCHHHHHHH----HHHT--TSCEEEECBTTTTBSHHH
T ss_pred EEEECccccccccCCHHHHHHH----HHHc--cCCcEEEecCCCCCCHHH
Confidence 99999999643211 0111111 1111 123348999999999875
No 63
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.53 E-value=3.6e-14 Score=129.22 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=88.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|+|++.... ....|+........ ...+.+- .
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~-----------------~~~~~~~----~--------- 51 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDFA---ENKEPTIGAAFLTQ-----------------RVTINEH----T--------- 51 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC---TTCCCCSSEEEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEE-----------------EEEECCE----E---------
Confidence 6999999999999999999988752 12222221111000 0000000 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~iii 355 (545)
..+.++||||... +......++.++|++++++|+++.........++..+. ..+.|+++
T Consensus 52 -------~~~~~~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 113 (170)
T 1ek0_A 52 -------VKFEIWDTAGQER-----------FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIAL 113 (170)
T ss_dssp -------EEEEEEEECCSGG-----------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -------EEEEEEECCCChh-----------hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 2688999999632 11235567899999999999987333344445555553 34679999
Q ss_pred EecCCCCCCH---HHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDT---QQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~---~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+. .++. +....+. +.. ....+.+||++|.|+++
T Consensus 114 v~nK~Dl~~~~~~~~v~~~~~~~~~----~~~---~~~~~~~Sa~~~~gi~~ 158 (170)
T 1ek0_A 114 VGNKIDXLQEGGERKVAREEGEKLA----EEK---GLLFFETSAKTGENVND 158 (170)
T ss_dssp EEECGGGGGSSCCCCSCHHHHHHHH----HHH---TCEEEECCTTTCTTHHH
T ss_pred EEECCCccccccccCCCHHHHHHHH----HHc---CCEEEEEeCCCCCCHHH
Confidence 9999998642 1111 1111111 111 12347899999998775
No 64
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.53 E-value=2e-15 Score=140.65 Aligned_cols=149 Identities=21% Similarity=0.235 Sum_probs=92.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|+|.. ..++..|+++...... ...+.+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~---~~~~~~~~~t~~~~~~-----------------~~~~~~-------------- 53 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGEN---VYIGNWPGVTVEKKEG-----------------EFEYNG-------------- 53 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTC---EEEEECTTSCCEEEEE-----------------EEEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---ccccCCCCeeccceEE-----------------EEEeCC--------------
Confidence 489999999999999999999876 3344444443322110 000111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHh--cCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~--~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..+.++||||.......... ..+...++ ..+|++++++|+.. .+....++..+...+.|+++
T Consensus 54 --------~~~~l~Dt~G~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~piil 117 (188)
T 2wjg_A 54 --------EKFKVVDLPGVYSLTANSID-----EIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLMEMGANLLL 117 (188)
T ss_dssp --------EEEEEEECCCCSCCSSSSHH-----HHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTTTCCEEE
T ss_pred --------cEEEEEECCCcCccccccHH-----HHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHhcCCCEEE
Confidence 26889999998642100000 11233333 46999999999975 35566777788778899999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.....+......+...++ ...+++||+++.|+++
T Consensus 118 v~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 118 ALNKMDLAKSLGIEIDVDKLEKILG-------VKVVPLSAAKKMGIEE 158 (188)
T ss_dssp EEECHHHHHHTTCCCCHHHHHHHHT-------SCEEECBGGGTBSHHH
T ss_pred EEEhhhccccccchHHHHHHHHHhC-------CCeEEEEecCCCCHHH
Confidence 9999997532211111111111111 1237999999999875
No 65
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.53 E-value=8.3e-15 Score=133.59 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=85.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||+|+|++..+ .....|+++...... ...+.+. .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~----~-------- 51 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKF---NPSFITTIGIDFKIK-----------------TVDINGK----K-------- 51 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC---CC-------CCEEEE-----------------EEESSSC----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC---CCCCCCccceeEEEE-----------------EEEECCE----E--------
Confidence 3799999999999999999998874 222222222111100 0001110 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~ii 354 (545)
..+.++||||...- ..+...++..+|++++++|++..........++..+. ..+.|++
T Consensus 52 --------~~~~l~D~~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 112 (170)
T 1g16_A 52 --------VKLQIWDTAGQERF-----------RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLL 112 (170)
T ss_dssp --------EEEEEECCTTGGGT-----------SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEeCCCChhh-----------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 26889999996321 1123456789999999999986322233344555443 3478999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.....+....+.... + +..+.+||++|.|+++
T Consensus 113 lv~nK~Dl~~~~~~~~~~~~~~~~~----~---~~~~~~Sa~~~~gv~~ 154 (170)
T 1g16_A 113 LVGNKSDMETRVVTADQGEALAKEL----G---IPFIESSAKNDDNVNE 154 (170)
T ss_dssp EEEECTTCTTCCSCHHHHHHHHHHH----T---CCEEECBTTTTBSHHH
T ss_pred EEEECccCCcCccCHHHHHHHHHHc----C---CeEEEEECCCCCCHHH
Confidence 9999999853211111111111111 1 1237999999999775
No 66
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.53 E-value=2.2e-14 Score=132.02 Aligned_cols=149 Identities=16% Similarity=0.138 Sum_probs=86.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||+|+|++..+ .....|++....... ...+.+ .
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~-----~-------- 54 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKF---DTQLFHTIGVEFLNK-----------------DLEVDG-----H-------- 54 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC---CC----CCSEEEEEE-----------------EEEETT-----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCceeeeEEEE-----------------EEEECC-----E--------
Confidence 3799999999999999999998774 222222222111100 000001 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---c----CC
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---G----HD 350 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~----~~ 350 (545)
-..+.++||||... +..+...++..+|++++++|.+..........++..+. . .+
T Consensus 55 -------~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (177)
T 1wms_A 55 -------FVTMQIWDTAGQER-----------FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 116 (177)
T ss_dssp -------EEEEEEEECCCCGG-----------GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTT
T ss_pred -------EEEEEEEeCCCchh-----------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCC
Confidence 02688999999632 11234456789999999999987322223334444442 2 56
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 351 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.|+++|+||+|+.+.+...+....+. +.. .....+.+||++|.|+++
T Consensus 117 ~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~--~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 117 FPFVILGNKIDISERQVSTEEAQAWC----RDN--GDYPYFETSAKDATNVAA 163 (177)
T ss_dssp SCEEEEEECTTCSSCSSCHHHHHHHH----HHT--TCCCEEECCTTTCTTHHH
T ss_pred CcEEEEEECCcccccccCHHHHHHHH----Hhc--CCceEEEEeCCCCCCHHH
Confidence 79999999999863211111111111 101 122338999999999875
No 67
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.52 E-value=9.9e-15 Score=135.22 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=88.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+++|++|||||||+|+|++..+ ....+........+ .+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~t~~~~~~~~---------------------~~~~------------- 61 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV--VTTKPTIGFNVETL---------------------SYKN------------- 61 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE--EEECSSTTCCEEEE---------------------EETT-------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc--CccCCcCccceEEE---------------------EECC-------------
Confidence 34899999999999999999997664 22222111111000 0011
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCe
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDK 352 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ 352 (545)
..+.++||||...-.. ....++.++|++++++|++.....+....++..+.. .+.|
T Consensus 62 ---------~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 121 (183)
T 1moz_A 62 ---------LKLNVWDLGGQTSIRP-----------YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 121 (183)
T ss_dssp ---------EEEEEEEEC----CCT-----------TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE
T ss_pred ---------EEEEEEECCCCHhHHH-----------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe
Confidence 2788999999843110 123446899999999999874434555566666543 4679
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+.....++...+ +.. ........+.+||++|.|+++
T Consensus 122 iilv~nK~Dl~~~~~~~~i~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~ 169 (183)
T 1moz_A 122 LLVFANKQDQPGALSASEVSKEL----NLVELKDRSWSIVASSAIKGEGITE 169 (183)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHT----TTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHh----CcccccCCceEEEEccCCCCcCHHH
Confidence 99999999987532222222221 111 111233458899999999875
No 68
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.52 E-value=4.7e-14 Score=128.01 Aligned_cols=143 Identities=16% Similarity=0.189 Sum_probs=86.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||+|+|++..+. ....+++ ...... ...+.+- .
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~-~~~~~~-----------------~~~~~~~----~-------- 51 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFV---EDYEPTK-ADSYRK-----------------KVVLDGE----E-------- 51 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC---SCCCTTC-CEEEEE-----------------EEEETTE----E--------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccC---CCCCCCc-ceEEEE-----------------EEEECCE----E--------
Confidence 37999999999999999999987741 1112222 111100 0000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~i 353 (545)
..+.++||||... +..+...++..+|++++++|++.....+....++..+. ..+.|+
T Consensus 52 --------~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 112 (168)
T 1u8z_A 52 --------VQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 112 (168)
T ss_dssp --------EEEEEEECCC--------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCE
T ss_pred --------EEEEEEECCCcch-----------hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE
Confidence 1688999999642 12245566889999999999987332233444444443 247899
Q ss_pred EEEecCCCCCCH-----HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDT-----QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~-----~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+. ++....... .+ +..+.+||++|.|+++
T Consensus 113 ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~---~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 113 LLVGNKSDLEDKRQVSVEEAKNRADQ--------WN---VNYVETSAKTRANVDK 156 (168)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHH--------HT---CEEEECCTTTCTTHHH
T ss_pred EEEEECccccccCccCHHHHHHHHHH--------cC---CeEEEeCCCCCCCHHH
Confidence 999999998643 222221111 11 2347899999999775
No 69
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.52 E-value=2.4e-14 Score=130.20 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=87.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||+|+|++..+. ....|++....... ...+.+. .
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~-----------------~~~~~~~----~-------- 53 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFT---KDYKKTIGVDFLER-----------------QIQVNDE----D-------- 53 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC---CCSSCCCSSSEEEE-----------------EEEETTE----E--------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC---CCCCCceEEEEEEE-----------------EEEECCE----E--------
Confidence 47999999999999999999997742 12222221111100 0000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc--CCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~--~~~~iii 355 (545)
..+.++||||...- ..+...++..+|++++++|++.....+....++..+.. .+.|+++
T Consensus 54 --------~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piil 114 (168)
T 1z2a_A 54 --------VRLMLWDTAGQEEF-----------DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTAL 114 (168)
T ss_dssp --------EEEEEECCTTGGGT-----------TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEE
T ss_pred --------EEEEEEcCCCcHhH-----------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 26889999995321 11234567899999999999873222334445555433 3689999
Q ss_pred EecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+..++ .+....+.... + ...+.+||+++.|+++
T Consensus 115 v~nK~Dl~~~~~~~~~~~~~~~~~~----~---~~~~~~Sa~~~~~i~~ 156 (168)
T 1z2a_A 115 VQNKIDLLDDSCIKNEEAEGLAKRL----K---LRFYRTSVKEDLNVSE 156 (168)
T ss_dssp EEECGGGGGGCSSCHHHHHHHHHHH----T---CEEEECBTTTTBSSHH
T ss_pred EEECcccCcccccCHHHHHHHHHHc----C---CeEEEEecCCCCCHHH
Confidence 9999998652111 01111111111 1 2348999999999875
No 70
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.52 E-value=9.8e-14 Score=143.68 Aligned_cols=151 Identities=23% Similarity=0.318 Sum_probs=94.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.|+++|++|||||||+|.|+|.. ..++..+.++....... ....+
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~---~~~~~~~~~t~~~~~~~-----------------~~~~~-------------- 213 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK---PEIASYPFTTRGINVGQ-----------------FEDGY-------------- 213 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC---CEEECCTTCSSCEEEEE-----------------EEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CccCCCCCeeeceeEEE-----------------EEecC--------------
Confidence 489999999999999999999977 34444444443322100 00001
Q ss_pred hcCchhhccCceeecCCCCCChh---hhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCC--ccHHHHHHHHHHhc--CC
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGE---KQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD--ISDEFKRVITSLRG--HD 350 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sge---kq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~--~~~~~~~~l~~L~~--~~ 350 (545)
..+.++||||..... ..... .. ....+...+|.+|+++|++... .......++..+.. .+
T Consensus 214 --------~~~~l~Dt~G~~~~~~~~~~~~~----~~-~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~ 280 (357)
T 2e87_A 214 --------FRYQIIDTPGLLDRPISERNEIE----KQ-AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD 280 (357)
T ss_dssp --------EEEEEEECTTTSSSCSTTSCHHH----HH-HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTT
T ss_pred --------ceEEEEeCCCccccchhhhhHHH----HH-HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCC
Confidence 268899999986511 00000 00 1223456799999999987532 12344556665543 27
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 351 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.|+++|+||+|+.+..++.+....+ +.. ..+.+++||++|+|+++
T Consensus 281 ~piilV~NK~Dl~~~~~~~~~~~~~-----~~~---~~~~~~iSA~~g~gi~~ 325 (357)
T 2e87_A 281 LPFLVVINKIDVADEENIKRLEKFV-----KEK---GLNPIKISALKGTGIDL 325 (357)
T ss_dssp SCEEEEECCTTTCCHHHHHHHHHHH-----HHT---TCCCEECBTTTTBTHHH
T ss_pred CCEEEEEECcccCChHHHHHHHHHH-----Hhc---CCCeEEEeCCCCcCHHH
Confidence 8999999999999876554333221 111 12237999999999885
No 71
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.52 E-value=7.7e-14 Score=128.24 Aligned_cols=146 Identities=15% Similarity=0.187 Sum_probs=89.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc--ceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD--RFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSK 274 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~--r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~ 274 (545)
...|+|+|.+|||||||+|+|++..+. . ...+++. ...... .+.+- .
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~-~~~~t~~~~~~~~~~-------------------~~~~~----~----- 63 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFM--A-DCPHTIGVEFGTRII-------------------EVSGQ----K----- 63 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--S-SCTTSCCCCEEEEEE-------------------EETTE----E-----
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--C-CCCCccceEEEEEEE-------------------EECCe----E-----
Confidence 348999999999999999999998752 1 1111111 111000 00000 0
Q ss_pred hhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCC
Q 009050 275 FECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDD 351 (545)
Q Consensus 275 ~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~ 351 (545)
..+.++||||... +..+...++.++|++++++|++.....+....++..+. ..+.
T Consensus 64 -----------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 121 (179)
T 1z0f_A 64 -----------IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT 121 (179)
T ss_dssp -----------EEEEEEECTTGGG-----------TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred -----------EEEEEEECCCChH-----------hhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2688999999521 12245677899999999999987322233344544443 3578
Q ss_pred eEEEEecCCCCCCHHHH--HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 352 KIRVVLNKADQVDTQQL--MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 352 ~iiiVlNK~D~~~~~~l--~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+++|+||+|+.+..++ .+. ..+... . .+..+.+||++|.|+++
T Consensus 122 piilv~nK~Dl~~~~~~~~~~~-~~~~~~----~---~~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 122 VIILIGNKADLEAQRDVTYEEA-KQFAEE----N---GLLFLEASAKTGENVED 167 (179)
T ss_dssp EEEEEEECTTCGGGCCSCHHHH-HHHHHH----T---TCEEEECCTTTCTTHHH
T ss_pred cEEEEEECcccccccccCHHHH-HHHHHH----c---CCEEEEEeCCCCCCHHH
Confidence 99999999998642111 111 111111 1 12448899999999875
No 72
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.52 E-value=1.6e-14 Score=149.38 Aligned_cols=109 Identities=19% Similarity=0.180 Sum_probs=64.3
Q ss_pred cCceeecCCCCCChh----hhhhhhccChHHHHHHHhcCC-CEEEEEeCCCCCCccHHH-HHHHHHHhcCCCeEEEEecC
Q 009050 286 EHITLVDTPGVLSGE----KQRTQRAYDFTGVTSWFAAKC-DLILLLFDPHKLDISDEF-KRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 286 ~~v~liDTPG~~sge----kq~v~~~~~~~~ia~~~~~~a-DliLlvlD~~~~~~~~~~-~~~l~~L~~~~~~iiiVlNK 359 (545)
..+.||||||+.... ...+.. .+..++..++..+ ++||+++|+.. ++.... ..+++.+...+.++++|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~iiL~v~~a~~-~~~~~~~~~i~~~~~~~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEF--QIRDMLMQFVTKENCLILAVSPANS-DLANSDALKVAKEVDPQGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHH--HHHHHHHHHHTSTTEEEEEEEETTS-CGGGCHHHHHHHHHCTTCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCCchhHHH--HHHHHHHHHHcCCCeEEEEEecCCC-ccchhHHHHHHHHhCcCCCceEEEecc
Confidence 479999999987521 000000 0122455566555 56666777764 444333 35778887788999999999
Q ss_pred CCCCCHHH-HHHHHHHHHHHhccccc--CCccEEEEeeccCCCccCc
Q 009050 360 ADQVDTQQ-LMRVYGALMWSLGKVLN--TPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 360 ~D~~~~~~-l~~v~~~l~~~l~k~~~--~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+.+... ...... ++... ..-...+.+||.++.++++
T Consensus 207 ~Dl~~~~~~~~~~~~------~~~~~l~~~~~~v~~~SA~~~~~i~~ 247 (353)
T 2x2e_A 207 LDLMDEGTDARDVLE------NKLLPLRRGYIGVVNRSQKDIDGKKD 247 (353)
T ss_dssp GGGSCTTCCCHHHHT------TCSSCCTTCEEECCCCCHHHHHTTCC
T ss_pred ccccCcchhHHHHHh------CCcccccCCceEEEeCCccccccccc
Confidence 99986422 112111 22211 1112237899999999876
No 73
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.52 E-value=7.1e-14 Score=128.99 Aligned_cols=146 Identities=15% Similarity=0.237 Sum_probs=89.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc--ceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD--RFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~--r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
..|+++|++|||||||+|+|++..+. . ...++.. ...... .+.+. .
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~--~-~~~~~~~~~~~~~~~-------------------~~~~~----~------ 60 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFV--E-FQESTIGAAFFSQTL-------------------AVNDA----T------ 60 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCT--T-TSCCCSCCSEEEEEE-------------------EETTE----E------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC--C-cCCCCceeEEEEEEE-------------------EECCE----E------
Confidence 38999999999999999999998752 1 1112111 111000 00000 0
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCe
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDK 352 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~ 352 (545)
..+.|+||||... +......++..+|++|+++|+++....+....++..+.. .+.|
T Consensus 61 ----------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 119 (181)
T 2efe_B 61 ----------VKFEIWDTAGQER-----------YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV 119 (181)
T ss_dssp ----------EEEEEEECCCSGG-----------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE
T ss_pred ----------EEEEEEeCCCChh-----------hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2688999999632 111345568899999999999873323445566665543 3679
Q ss_pred EEEEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+..++ .+....+. +.. .+..+.+||++|.|+++
T Consensus 120 ~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~---~~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 120 MALAGNKSDLLDARKVTAEDAQTYA----QEN---GLFFMETSAKTATNVKE 164 (181)
T ss_dssp EEEEEECTTCTTTCCSCHHHHHHHH----HHT---TCEEEECCSSSCTTHHH
T ss_pred EEEEEECCcccccccCCHHHHHHHH----HHc---CCEEEEEECCCCCCHHH
Confidence 9999999999753211 01111111 111 22348999999999875
No 74
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.52 E-value=7.5e-14 Score=129.65 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=86.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|+|++..+. ....+++ ....... ..+.+. .
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~-~~~~~~~-----------------~~~~~~----~--------- 51 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNHFV---DEYDPTI-EDSYRKQ-----------------VVIDGE----T--------- 51 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCC---CCCCTTC-CEEEEEE-----------------EEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC---CCCCCCc-hheEEEE-----------------EEECCc----E---------
Confidence 7999999999999999999987741 1112222 1111000 000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~ii 354 (545)
..+.++||||...- ..+...++..+|++++++|.+..........++..+. ..+.|++
T Consensus 52 -------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 113 (189)
T 4dsu_A 52 -------CLLDILDTAGQEEY-----------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113 (189)
T ss_dssp -------EEEEEEECCCC--------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE
T ss_pred -------EEEEEEECCCcHHH-----------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 15788999996431 1134566788999999999987322234444444443 2468999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.....+....+.... + .+.+.+||++|.|+++
T Consensus 114 ~v~nK~Dl~~~~~~~~~~~~~~~~~----~---~~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 114 LVGNKCDLPSRTVDTKQAQDLARSY----G---IPFIETSAKTRQGVDD 155 (189)
T ss_dssp EEEECTTSSSCSSCHHHHHHHHHHH----T---CCEEECCTTTCTTHHH
T ss_pred EEEECccCcccccCHHHHHHHHHHc----C---CeEEEEeCCCCCCHHH
Confidence 9999999874321111112221111 1 1237899999999775
No 75
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.52 E-value=3.2e-14 Score=133.76 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=89.5
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+|+|++|||||||+|+|++..+ . ...|+.. .... ...+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~--~--~~~~t~~-~~~~------------------~~~~~~------------- 72 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEI--V--TTIPTIG-FNVE------------------TVEYKN------------- 72 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCC--E--EEEEETT-EEEE------------------EEEETT-------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCc--c--ccCCcCc-eeEE------------------EEEECC-------------
Confidence 34999999999999999999987664 1 1122111 1100 000011
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCe
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDK 352 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ 352 (545)
..+.++||||... +..+...++..+|++++++|+++.........++..+.. .+.|
T Consensus 73 ---------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p 132 (192)
T 2b6h_A 73 ---------ICFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132 (192)
T ss_dssp ---------EEEEEEECC----------------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE
T ss_pred ---------EEEEEEECCCCHh-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe
Confidence 2788999999832 111345567899999999999874334455556665543 3689
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+.....++...+ +.. ........+.+||++|.|+++
T Consensus 133 iilv~NK~Dl~~~~~~~~i~~~~----~~~~~~~~~~~~~~~SA~~g~gi~~ 180 (192)
T 2b6h_A 133 LLVFANKQDMPNAMPVSELTDKL----GLQHLRSRTWYVQATCATQGTGLYD 180 (192)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHT----TGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHh----CcccccCCceEEEECcCCCcCCHHH
Confidence 99999999997642222222221 211 112233458899999999775
No 76
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.52 E-value=3.7e-14 Score=129.38 Aligned_cols=147 Identities=16% Similarity=0.192 Sum_probs=86.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|+|++..++ ....|+........ ...+.+. .
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~-----------------~~~~~~~----~-------- 54 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFN---DKHITTLGASFLTK-----------------KLNIGGK----R-------- 54 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCC---SSCCCCCSCEEEEE-----------------EEESSSC----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC---cCCCCccceEEEEE-----------------EEEECCE----E--------
Confidence 47999999999999999999988752 12222222111100 0001110 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~ii 354 (545)
..+.++||||...-. .+...++.++|++++++|+++.........++..+.. .+.|++
T Consensus 55 --------~~l~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 115 (170)
T 1z08_A 55 --------VNLAIWDTAGQERFH-----------ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLC 115 (170)
T ss_dssp --------EEEEEEECCCC------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEE
T ss_pred --------EEEEEEECCCcHhhh-----------hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 167899999964311 1223347899999999999873323344455555433 468999
Q ss_pred EEecCCCCCCHHHH--HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQL--MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l--~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+...+ .+. ..+. +.. ....+.+||++|.|+++
T Consensus 116 lv~nK~Dl~~~~~~~~~~~-~~~~----~~~---~~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 116 IVGNKIDLEKERHVSIQEA-ESYA----ESV---GAKHYHTSAKQNKGIEE 158 (170)
T ss_dssp EEEECGGGGGGCCSCHHHH-HHHH----HHT---TCEEEEEBTTTTBSHHH
T ss_pred EEEECcccccccccCHHHH-HHHH----HHc---CCeEEEecCCCCCCHHH
Confidence 99999998653111 111 1111 111 12347899999999875
No 77
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.51 E-value=4.7e-14 Score=127.53 Aligned_cols=146 Identities=15% Similarity=0.190 Sum_probs=87.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|+|++.... . ...+++ ...... ...+.+- .
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~~--~-~~~~~~-~~~~~~-----------------~~~~~~~----~--------- 50 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHFV--D-ECDPTI-EDSYRK-----------------QVVIDGE----T--------- 50 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCC--S-CCCTTC-CEEEEE-----------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCc--c-ccCCcc-ceEEEE-----------------EEEECCE----E---------
Confidence 6999999999999999999987741 1 111221 111100 0000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ii 354 (545)
..+.++||||.... ..+...++..+|.+++++|++..........++..+.. .+.|++
T Consensus 51 -------~~~~~~D~~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~i 112 (166)
T 2ce2_X 51 -------CLLDILDTAGQEEY-----------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112 (166)
T ss_dssp -------EEEEEEECCCCSSC-----------CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE
T ss_pred -------EEEEEEECCCchhh-----------hHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 25789999997431 12345567899999999999863322344455554432 368999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.+...+....+.... + ++.+.+||++|.|+++
T Consensus 113 iv~nK~Dl~~~~~~~~~~~~~~~~~----~---~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 113 LVGNKSDLAARTVESRQAQDLARSY----G---IPYIETSAKTRQGVED 154 (166)
T ss_dssp EEEECTTCSCCCSCHHHHHHHHHHH----T---CCEEEECTTTCTTHHH
T ss_pred EEEEchhhhhcccCHHHHHHHHHHc----C---CeEEEecCCCCCCHHH
Confidence 9999999875211111111221111 1 1237899999998775
No 78
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.51 E-value=6.1e-14 Score=129.15 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=87.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|++..+ .....++++...... ...+.+-
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~------------- 56 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTF---SGSYITTIGVDFKIR-----------------TVEINGE------------- 56 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC------CCTTTBSEEEEEE-----------------EEEETTE-------------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCccCCCceeEEEEE-----------------EEEECCE-------------
Confidence 4899999999999999999999875 223333332221110 0000110
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc--CCCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~--~~~~iii 355 (545)
-..+.++||||...- . .+...++..+|++++++|++..........++..+.. .+.|+++
T Consensus 57 -------~~~~~i~Dt~G~~~~-----~------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~il 118 (181)
T 3tw8_B 57 -------KVKLQIWDTAGQERF-----R------TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL 118 (181)
T ss_dssp -------EEEEEEEEETTGGGC-----S------SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred -------EEEEEEEcCCCchhh-----h------hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 026889999995321 0 0223457899999999999874333344456665543 3579999
Q ss_pred EecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+...+. .....+. +..+ ...+.+||++|.|+++
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 119 VGNKNDDPERKVVETEDAYKFA----GQMG---IQLFETSAKENVNVEE 160 (181)
T ss_dssp EEECTTCGGGCCSCHHHHHHHH----HHHT---CCEEECBTTTTBSHHH
T ss_pred EEECCCCchhcccCHHHHHHHH----HHcC---CeEEEEECCCCCCHHH
Confidence 99999986432111 0011111 1111 1237899999999875
No 79
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.51 E-value=1.1e-13 Score=129.58 Aligned_cols=147 Identities=18% Similarity=0.213 Sum_probs=89.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc-ceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-RFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+|+|.+|||||||+|+|++..+ .... .++.. .+... . ..+.+ ..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~--~~~~-~~t~~~~~~~~--------------~----~~~~~----~~------- 73 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEF--SHDS-RTTIGVEFSTR--------------T----VMLGT----AA------- 73 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC--CSSC-CCCSSEEEEEE--------------E----EEETT----EE-------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC--CCCC-CCccceeEEEE--------------E----EEECC----EE-------
Confidence 4899999999999999999999875 3222 12111 11100 0 00000 00
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKI 353 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~i 353 (545)
..+.|+||||...- ..+...++..+|++|+++|++..........++..+.. .+.|+
T Consensus 74 ---------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~pi 133 (193)
T 2oil_A 74 ---------VKAQIWDTAGLERY-----------RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133 (193)
T ss_dssp ---------EEEEEEEESCCCTT-----------CTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEE
T ss_pred ---------EEEEEEeCCCchhh-----------hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeE
Confidence 26889999998431 11345668999999999999873222334456666643 36799
Q ss_pred EEEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+...+. .....+. +.. .+..+.+||++|.|+++
T Consensus 134 ilv~nK~Dl~~~~~~~~~~~~~~~----~~~---~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 134 MLVGNKSDLSQAREVPTEEARMFA----ENN---GLLFLETSALDSTNVEL 177 (193)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHH----HHT---TCEEEEECTTTCTTHHH
T ss_pred EEEEECCCcccccccCHHHHHHHH----HHc---CCEEEEEeCCCCCCHHH
Confidence 9999999987431110 1111111 111 22347899999999875
No 80
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.51 E-value=1.9e-14 Score=134.42 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=90.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+++|.+|||||||+|+|++..+ . ...|+.. .... . ..+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~--~--~~~~t~~-~~~~--------------~----~~~~~------------- 65 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDV--V--TTVPTVG-VNLE--------------T----LQYKN------------- 65 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCC--E--EECSSTT-CCEE--------------E----EEETT-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC--C--CcCCCCc-eEEE--------------E----EEECC-------------
Confidence 34899999999999999999987664 1 1122211 1000 0 00001
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCe
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDK 352 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ 352 (545)
..+.++||||...-.. +...++.++|++++++|+++.........++..+.. .+.|
T Consensus 66 ---------~~~~~~Dt~G~~~~~~-----------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 125 (189)
T 2x77_A 66 ---------ISFEVWDLGGQTGVRP-----------YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL 125 (189)
T ss_dssp ---------EEEEEEEECCSSSSCC-----------CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE
T ss_pred ---------EEEEEEECCCCHhHHH-----------HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe
Confidence 2789999999843111 112346899999999999874434445555555533 3689
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcc-cccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGK-VLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k-~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+.....++...+ +. ......+..+++||++|.|+++
T Consensus 126 iilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (189)
T 2x77_A 126 LLIFANKQDLPDAASEAEIAEQL----GVSSIMNRTWTIVKSSSKTGDGLVE 173 (189)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHT----TGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEEECCCCcCCCCHHHHHHHh----ChhhccCCceEEEEccCCCccCHHH
Confidence 99999999998642222222221 21 1112233458899999999775
No 81
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.51 E-value=9.6e-14 Score=130.01 Aligned_cols=147 Identities=16% Similarity=0.205 Sum_probs=87.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc-ceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-RFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+|+|.+|||||||+|+|++..+ ... ..++++ ..... ...+.+ ..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~-~~~t~~~~~~~~------------------~~~~~~-----~~------ 69 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRF--QPV-HDLTIGVEFGAR------------------MVNIDG-----KQ------ 69 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC--CC------CCSSEEEE------------------EEEETT-----EE------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC--CCC-CCCcccceeEEE------------------EEEECC-----EE------
Confidence 3899999999999999999999875 222 112211 11110 000001 00
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKI 353 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~i 353 (545)
..+.|+||||... |..+...++..+|++|+++|++.....+....++..+.. .+.|+
T Consensus 70 ---------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~pi 129 (191)
T 2a5j_A 70 ---------IKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVI 129 (191)
T ss_dssp ---------EEEEEECCTTGGG-----------TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred ---------EEEEEEECCCchh-----------hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 2688999999632 111234567899999999999873323334455555543 47899
Q ss_pred EEEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+..++. +....+.... ....+.+||++|.|+++
T Consensus 130 ilv~nK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 130 MLIGNKSDLESRRDVKREEGEAFAREH-------GLIFMETSAKTACNVEE 173 (191)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHH-------TCEEEEECTTTCTTHHH
T ss_pred EEEEECcccCCccccCHHHHHHHHHHc-------CCEEEEEeCCCCCCHHH
Confidence 9999999986421110 0111111111 12347899999999875
No 82
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.51 E-value=6.1e-14 Score=128.90 Aligned_cols=147 Identities=21% Similarity=0.219 Sum_probs=88.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|++..+ . ....++++...... ...+.+- .
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~--~-~~~~~~~~~~~~~~-----------------~~~~~~~----~-------- 62 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSF--D-NTYQATIGIDFLSK-----------------TMYLEDR----T-------- 62 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC--C-SSCCCCCSEEEEEE-----------------EEEETTE----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--C-CCCCCceeeEEEEE-----------------EEEECCe----E--------
Confidence 3799999999999999999998775 2 22233332211110 0000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~ii 354 (545)
..+.++||||...- ......++.++|++++++|++..........++..+. ..+.|++
T Consensus 63 --------~~~~~~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 123 (179)
T 2y8e_A 63 --------VRLQLWDTAGQERF-----------RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIM 123 (179)
T ss_dssp --------EEEEEEEECCSGGG-----------GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEE
T ss_pred --------EEEEEEECCCcHHH-----------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 26889999996321 1123456789999999999986322233444555443 3468999
Q ss_pred EEecCCCCCCHHHH--HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQL--MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l--~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+..++ .+.. .+. +.. .+..+.+||++|.|+++
T Consensus 124 lv~nK~Dl~~~~~~~~~~~~-~~~----~~~---~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 124 LVGNKTDLSDKRQVSTEEGE-RKA----KEL---NVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEEECGGGGGGCCSCHHHHH-HHH----HHH---TCEEEEEBTTTTBSHHH
T ss_pred EEEECCcccccCcCCHHHHH-HHH----HHc---CCeEEEEeCCCCCCHHH
Confidence 99999998643211 1111 111 111 12347899999998775
No 83
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.51 E-value=1.2e-13 Score=125.87 Aligned_cols=148 Identities=18% Similarity=0.265 Sum_probs=89.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||+|+|++..++ ....+.+.++...... .+.+- .
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~-------------------~~~~~---~--------- 54 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFD-PNINPTIGASFMTKTV-------------------QYQNE---L--------- 54 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEE-------------------EETTE---E---------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEE-------------------EECCe---E---------
Confidence 47999999999999999999998752 1112211111111100 00000 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~ii 354 (545)
..+.++||||... +..+...++..+|++++++|+++.........++..+. ..+.|++
T Consensus 55 --------~~~~~~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~ii 115 (170)
T 1z0j_A 55 --------HKFLIWDTAGLER-----------FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 115 (170)
T ss_dssp --------EEEEEEEECCSGG-----------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEE
T ss_pred --------EEEEEEcCCCchh-----------hhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 2688999999732 11134566899999999999987333344445555554 3467899
Q ss_pred EEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+..++ .+....+. +.. ....+.+||++|.|+++
T Consensus 116 lv~nK~Dl~~~~~v~~~~~~~~~----~~~---~~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 116 IAGNKCDLTDVREVMERDAKDYA----DSI---HAIFVETSAKNAININE 158 (170)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHH----HHT---TCEEEECBTTTTBSHHH
T ss_pred EEEECCccccccccCHHHHHHHH----HHc---CCEEEEEeCCCCcCHHH
Confidence 99999999753211 11111111 111 12348899999999775
No 84
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=8.1e-14 Score=130.72 Aligned_cols=150 Identities=17% Similarity=0.259 Sum_probs=92.2
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
....|+|+|.+|||||||+|+|++..+. ..+.+.+.++...... .+.+- .
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~-------------------~~~~~---~------- 71 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFD-HNISPTIGASFMTKTV-------------------PCGNE---L------- 71 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCC-TTCCCCSSEEEEEEEE-------------------ECSSS---E-------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCCcceeEEEEEE-------------------EeCCE---E-------
Confidence 3448999999999999999999998752 1222322222211110 00000 0
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCe
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDK 352 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~ 352 (545)
..+.|+||||... +..+...++..+|++|+++|++..........++..+.. .+.|
T Consensus 72 ----------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p 130 (192)
T 2fg5_A 72 ----------HKFLIWDTAGQER-----------FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV 130 (192)
T ss_dssp ----------EEEEEEEECCSGG-----------GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE
T ss_pred ----------EEEEEEcCCCchh-----------hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc
Confidence 2688999999632 111344568899999999999874433445556665543 3689
Q ss_pred EEEEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+..++ .+....+. +.. ....+.+||++|.|+++
T Consensus 131 iiiv~NK~Dl~~~~~v~~~~~~~~~----~~~---~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 131 MAIAGNKCDLSDIREVPLKDAKEYA----ESI---GAIVVETSAKNAINIEE 175 (192)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHH----HTT---TCEEEECBTTTTBSHHH
T ss_pred EEEEEECcccccccccCHHHHHHHH----HHc---CCEEEEEeCCCCcCHHH
Confidence 9999999998642111 01111111 111 13348999999999875
No 85
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=3.8e-14 Score=133.07 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=85.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+.. ...|+.. ..... .. .+.+ .
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~-~~~~~-----------~~------~~~~-----~-------- 54 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRD---TYIPTIE-DTYRQ-----------VI------SCDK-----S-------- 54 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCC---TTSCCCC-EEEEE-----------EE------EETT-----E--------
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC---cccCccc-cceeE-----------EE------EECC-----E--------
Confidence 489999999999999999999977521 1112111 11000 00 0000 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHH---HHHhc--CCCe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVI---TSLRG--HDDK 352 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l---~~L~~--~~~~ 352 (545)
-..+.|+||||... +..+...++..+|++++++|.+.....+....++ ..+.. .+.|
T Consensus 55 -------~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p 116 (199)
T 2gf0_A 55 -------VCTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP 116 (199)
T ss_dssp -------EEEEEEEECCGGGS-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC
T ss_pred -------EEEEEEEeCCChHH-----------hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 02688999999632 1224556678999999999998632222222333 33332 2679
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+.+........+... .. +..+.+||++|.|+++
T Consensus 117 iilv~nK~Dl~~~~~~~~~~~~~~~~----~~---~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 117 VMLVGNKCDETQREVDTREAQAVAQE----WK---CAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEEEEECTTCSSCSSCHHHHHHHHHH----HT---CEEEECBTTTTBSHHH
T ss_pred EEEEEECccCCccccCHHHHHHHHHH----hC---CeEEEEecCCCCCHHH
Confidence 99999999997521101111111111 11 2347899999999875
No 86
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.50 E-value=2.9e-14 Score=132.16 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=67.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+ .....|+++...... ...+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~~------------- 55 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAF---NSTFISTIGIDFKIR-----------------TIELDGK------------- 55 (183)
T ss_dssp EEEEEECCCCC-------------------CHHHHHCEEEEEE-----------------EEEETTE-------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCcccceeEEE-----------------EEEECCE-------------
Confidence 4899999999999999999998763 222223322211100 0000010
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~ii 354 (545)
-..+.|+||||...- ..+...++.++|++|+++|+++....+....++..+.. .+.|++
T Consensus 56 -------~~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 117 (183)
T 2fu5_C 56 -------RIKLQIWDTAGQERF-----------RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKM 117 (183)
T ss_dssp -------EEEEEEEEC--------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred -------EEEEEEEcCCCChhh-----------hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 026889999997421 11223457899999999999873323444456655543 467999
Q ss_pred EEecCCCCCCH-----HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDT-----QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~-----~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+. ++....... . + +..+.+||++|.|+++
T Consensus 118 lv~nK~Dl~~~~~v~~~~~~~~~~~----~----~---~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 118 ILGNKCDVNDKRQVSKERGEKLALD----Y----G---IKFMETSAKANINVEN 160 (183)
T ss_dssp EEEEC--CCSCCCSCHHHHHHHHHH----H----T---CEEEECCC---CCHHH
T ss_pred EEEECccCCccCcCCHHHHHHHHHH----c----C---CeEEEEeCCCCCCHHH
Confidence 99999998742 222222111 1 1 2347899999999875
No 87
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.50 E-value=4.3e-14 Score=131.57 Aligned_cols=151 Identities=20% Similarity=0.221 Sum_probs=88.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+|+|++..+ .++..|+++.......
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~t~~~~~~~------------------------------------- 42 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKV---RRGKRPGVTRKIIEIE------------------------------------- 42 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC---SSSSSTTCTTSCEEEE-------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC---ccCCCCCccceeEEEe-------------------------------------
Confidence 689999999999999999999873 4444444443221100
Q ss_pred cCchhhccCceeecCCCCCChh------hhhhhhccChHHHHHHH----hcCCCEEEEEeCCCCCCc----------cHH
Q 009050 279 QMPHSLLEHITLVDTPGVLSGE------KQRTQRAYDFTGVTSWF----AAKCDLILLLFDPHKLDI----------SDE 338 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sge------kq~v~~~~~~~~ia~~~----~~~aDliLlvlD~~~~~~----------~~~ 338 (545)
...+.++||||+.... ..+. ......+ +..+++++.++|+....- ...
T Consensus 43 ------~~~~~l~Dt~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~ 110 (190)
T 2cxx_A 43 ------WKNHKIIDMPGFGFMMGLPKEVQERI------KDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPI 110 (190)
T ss_dssp ------ETTEEEEECCCBSCCTTSCHHHHHHH------HHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCH
T ss_pred ------cCCEEEEECCCccccccCCHHHHHHH------HHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHH
Confidence 0267899999964310 1111 1122222 456778888999864100 001
Q ss_pred HHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 339 FKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 339 ~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
..+++..+...+.|+++|+||+|+.+.. .+....+...++.....-.+..+++||++|.|+++
T Consensus 111 ~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 173 (190)
T 2cxx_A 111 DVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIER 173 (190)
T ss_dssp HHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHH
T ss_pred HHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHH
Confidence 1224445555678999999999998643 11222222222321100012237999999999875
No 88
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=130.09 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=88.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+. ....+++ ....... ..+.+- .
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~-~~~~~~~-----------------~~~~~~----~-------- 61 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEFV---EDYEPTK-ADSYRKK-----------------VVLDGE----E-------- 61 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC---TTCCTTC-CEEEEEE-----------------EEETTE----E--------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCcc-ceEEEEE-----------------EEECCE----E--------
Confidence 48999999999999999999987741 1112222 1111000 000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~i 353 (545)
..+.|+||||... +..+...++..+|++++++|.+..........++..+. ..+.|+
T Consensus 62 --------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 122 (206)
T 2bov_A 62 --------VQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 122 (206)
T ss_dssp --------EEEEEEECCCTTC-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCE
T ss_pred --------EEEEEEcCCChhh-----------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 1688999999743 22245566789999999999987332333444444443 236899
Q ss_pred EEEecCCCCCCHHH--HHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQ--LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~--l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+..+ ..+.. .+. +..+ +..+.+||++|.|+++
T Consensus 123 ilv~nK~Dl~~~~~~~~~~~~-~~~----~~~~---~~~~~~Sa~~g~gi~~ 166 (206)
T 2bov_A 123 LLVGNKSDLEDKRQVSVEEAK-NRA----EQWN---VNYVETSAKTRANVDK 166 (206)
T ss_dssp EEEEECTTCGGGCCSCHHHHH-HHH----HHHT---CEEEEECTTTCTTHHH
T ss_pred EEEEeccCccccccccHHHHH-HHH----HHhC---CeEEEEeCCCCCCHHH
Confidence 99999999875311 11111 111 1111 2347899999999875
No 89
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.50 E-value=2e-13 Score=126.69 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=89.4
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+|+|++|||||||+|+|++..+ . ....++++...... ...+.+ .
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~--~-~~~~~~~~~~~~~~-----------------~~~~~~-----~------- 57 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKF--K-DDSNHTIGVEFGSK-----------------IINVGG-----K------- 57 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--C-TTCCCCSEEEEEEE-----------------EEEETT-----E-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC--C-CCCCCccceEEEEE-----------------EEEECC-----E-------
Confidence 35899999999999999999999875 2 22222222111000 000001 0
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH---hcCCCeE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL---RGHDDKI 353 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L---~~~~~~i 353 (545)
-..+.++||||... +..+...++..+|++++++|+++.........++..+ ...+.|+
T Consensus 58 --------~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 118 (186)
T 2bme_A 58 --------YVKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVI 118 (186)
T ss_dssp --------EEEEEEEEECCSGG-----------GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred --------EEEEEEEeCCCcHH-----------HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 01688999999632 1224456689999999999998732223333444433 3457899
Q ss_pred EEEecCCCCCCHHHH--HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQL--MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l--~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+..++ .+.. .+. +. ..+..+.+||++|.|+++
T Consensus 119 ilv~nK~Dl~~~~~~~~~~~~-~~~----~~---~~~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 119 ILCGNKKDLDADREVTFLEAS-RFA----QE---NELMFLETSALTGENVEE 162 (186)
T ss_dssp EEEEECGGGGGGCCSCHHHHH-HHH----HH---TTCEEEECCTTTCTTHHH
T ss_pred EEEEECcccccccccCHHHHH-HHH----HH---cCCEEEEecCCCCCCHHH
Confidence 999999998642111 1111 111 11 123447899999999875
No 90
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.50 E-value=6.6e-14 Score=128.94 Aligned_cols=147 Identities=17% Similarity=0.172 Sum_probs=88.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+. +..+.|+....... ..+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~~----~~~~~t~~~~~~~~-----------------~~~~~~------------- 55 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYFV----SDYDPTIEDSYTKI-----------------CSVDGI------------- 55 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC----SSCCTTCCEEEEEE-----------------EEETTE-------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc----cccCCCcCceEEEE-----------------EEECCE-------------
Confidence 48999999999999999999997641 22222222221100 000010
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH----hcCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----RGHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L----~~~~~~i 353 (545)
-..+.++||||...- ..+...++..+|++++++|.+..........++..+ ...+.|+
T Consensus 56 -------~~~~~~~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 117 (181)
T 2fn4_A 56 -------PARLDILDTAGQEEF-----------GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV 117 (181)
T ss_dssp -------EEEEEEEECCCTTTT-----------SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCE
T ss_pred -------EEEEEEEECCCchhh-----------HHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 026789999997431 113445678899999999998732223344444443 3457899
Q ss_pred EEEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+..++. .....+ .+.. .+..+.+||++|.|+++
T Consensus 118 ilv~nK~Dl~~~~~v~~~~~~~~----~~~~---~~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 118 VLVGNKADLESQRQVPRSEASAF----GASH---HVAYFEASAKLRLNVDE 161 (181)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHH----HHHT---TCEEEECBTTTTBSHHH
T ss_pred EEEEECcccccccccCHHHHHHH----HHHc---CCeEEEecCCCCCCHHH
Confidence 9999999987532111 111111 1111 22347899999999875
No 91
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=1.2e-13 Score=129.11 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=89.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|++..+. ....++........ ...+.+. .
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~-----------------~~~~~~~----~-------- 63 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFD---PELAATIGVDFKVK-----------------TISVDGN----K-------- 63 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC---TTCCCCCSEEEEEE-----------------EEEETTE----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC---ccCCCccceEEEEE-----------------EEEECCe----E--------
Confidence 48999999999999999999998752 11222211111000 0000000 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.|+||||... +..+...++..+|++|+++|++..........++..+.. .+.|+
T Consensus 64 --------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ 124 (195)
T 1x3s_A 64 --------AKLAIWDTAGQER-----------FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN 124 (195)
T ss_dssp --------EEEEEEEECSSGG-----------GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEE
T ss_pred --------EEEEEEeCCCchh-----------hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcE
Confidence 2688999999632 111345668999999999999873333344566666654 36799
Q ss_pred EEEecCCCCCCH----HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDT----QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~----~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+... ++..+.. +.. .+..+.+||+++.|+++
T Consensus 125 ilv~nK~Dl~~~~~~~~~~~~~~--------~~~---~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 125 MLVGNKIDKENREVDRNEGLKFA--------RKH---SMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEEECTTSSSCCSCHHHHHHHH--------HHT---TCEEEECCTTTCTTHHH
T ss_pred EEEEECCcCcccccCHHHHHHHH--------HHc---CCEEEEecCCCCCCHHH
Confidence 999999998532 2222111 111 12347899999999875
No 92
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.50 E-value=1.7e-13 Score=126.35 Aligned_cols=149 Identities=18% Similarity=0.253 Sum_probs=82.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccc-eEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDR-FVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r-~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+++|++|||||||+|+|++..+. ....|+++. .... ...+.+- .
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~------------------~~~~~~~----~------- 56 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYS---QQYKATIGADFLTK------------------EVTVDGD----K------- 56 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC---TTC---CCCSCEEE------------------EECCSSS----C-------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCC---cccCCccceEEEEE------------------EEEEcCC----c-------
Confidence 38999999999999999999998752 122222211 1100 0000000 0
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc-------C
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-------H 349 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~-------~ 349 (545)
...+.++||||... +..+...++..+|++++++|++.....+....++..+.. .
T Consensus 57 --------~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 117 (182)
T 1ky3_A 57 --------VATMQVWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPE 117 (182)
T ss_dssp --------CEEEEEECCC---------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTT
T ss_pred --------EEEEEEEECCCChH-----------hhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcC
Confidence 02678999999632 111334457899999999999873322333444444422 5
Q ss_pred CCeEEEEecCCCCCCHHH-H-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 350 DDKIRVVLNKADQVDTQQ-L-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 350 ~~~iiiVlNK~D~~~~~~-l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+.|+++|+||+|+..... + .+....+ .+.. .....+.+||++|.|+++
T Consensus 118 ~~p~ilv~nK~Dl~~~~~~v~~~~~~~~----~~~~--~~~~~~~~Sa~~~~gi~~ 167 (182)
T 1ky3_A 118 TFPFVILGNKIDAEESKKIVSEKSAQEL----AKSL--GDIPLFLTSAKNAINVDT 167 (182)
T ss_dssp TCCEEEEEECTTSCGGGCCSCHHHHHHH----HHHT--TSCCEEEEBTTTTBSHHH
T ss_pred CCcEEEEEECCccccccccCCHHHHHHH----HHhc--CCCeEEEEecCCCCCHHH
Confidence 679999999999863211 0 0111111 1111 122348999999999875
No 93
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.50 E-value=4e-13 Score=125.51 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=61.4
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCC------CccHHHHHHHHHHhc--CCCeEEEEec
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL------DISDEFKRVITSLRG--HDDKIRVVLN 358 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~------~~~~~~~~~l~~L~~--~~~~iiiVlN 358 (545)
.+.++||||... |..+...++.++|++|+++|++.. ........++..++. .+.|+++|.|
T Consensus 75 ~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~N 143 (198)
T 3t1o_A 75 RFHLYTVPGQVF-----------YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVN 143 (198)
T ss_dssp EEEEEECCSCCS-----------CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEE
T ss_pred EEEEEeCCChHH-----------HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEE
Confidence 688999999743 222455678999999999999841 111122233333321 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 359 KADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 359 K~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+|+.+.....++... .+..+.. ..+.+||++|.|+++
T Consensus 144 K~Dl~~~~~~~~~~~~-----~~~~~~~--~~~~~Sa~~~~gv~~ 181 (198)
T 3t1o_A 144 KRDLPDALPVEMVRAV-----VDPEGKF--PVLEAVATEGKGVFE 181 (198)
T ss_dssp CTTSTTCCCHHHHHHH-----HCTTCCS--CEEECBGGGTBTHHH
T ss_pred chhcccccCHHHHHHH-----HHhcCCc--eEEEEecCCCcCHHH
Confidence 9998753211122111 1222221 337999999999875
No 94
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=1.3e-13 Score=130.84 Aligned_cols=149 Identities=14% Similarity=0.219 Sum_probs=89.0
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+|+|.+|||||||+|+|++..++ ....++.+...... ...+.+. .
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~---~~~~~t~~~~~~~~-----------------~~~~~~~----~------- 74 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIK-----------------TVEINGE----K------- 74 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC---TTCCCCCSEEEEEE-----------------EEEETTE----E-------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC---CCCCCccceeEEEE-----------------EEEECCE----E-------
Confidence 348999999999999999999987752 22223222111100 0000010 0
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKI 353 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~i 353 (545)
..+.|+||||... |..+...++..+|++|+++|+++....+....++..+. ..+.|+
T Consensus 75 ---------~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pi 134 (201)
T 2ew1_A 75 ---------VKLQIWDTAGQER-----------FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVIT 134 (201)
T ss_dssp ---------EEEEEEEECCSGG-----------GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred ---------EEEEEEECCCcHH-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 2688999999622 22244566899999999999987322222344555443 346799
Q ss_pred EEEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+..++. +....+. +..+ +..+.+||++|.|+++
T Consensus 135 ilv~NK~Dl~~~~~v~~~~~~~~~----~~~~---~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 135 VLVGNKIDLAERREVSQQRAEEFS----EAQD---MYYLETSAKESDNVEK 178 (201)
T ss_dssp EEEEECGGGGGGCSSCHHHHHHHH----HHHT---CCEEECCTTTCTTHHH
T ss_pred EEEEECCCCccccccCHHHHHHHH----HHcC---CEEEEEeCCCCCCHHH
Confidence 9999999986421110 0111111 1111 2337899999999875
No 95
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.49 E-value=4.2e-13 Score=123.65 Aligned_cols=137 Identities=17% Similarity=0.226 Sum_probs=84.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+|++++..+ .. ..|++...... ++ .+.+- .
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~~--~~--~~~t~~~~~~~------------~~------~~~~~----~--------- 53 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSY--QV--LEKTESEQYKK------------EM------LVDGQ----T--------- 53 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCC--CC--CSSCSSSEEEE------------EE------EETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC--cCCCcceeEEE------------EE------EECCE----E---------
Confidence 799999999999999999999876 32 22222111100 00 00010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHH---HHHHhc---CCCe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRV---ITSLRG---HDDK 352 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~---l~~L~~---~~~~ 352 (545)
..+.++||||... ..++.++|++|+++|.++.........+ +..+.. .+.|
T Consensus 54 -------~~l~i~Dt~G~~~----------------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~p 110 (178)
T 2iwr_A 54 -------HLVLIREEAGAPD----------------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA 110 (178)
T ss_dssp -------EEEEEEECSSSCC----------------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCE
T ss_pred -------EEEEEEECCCCch----------------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 2678999999742 1235789999999999873323334443 333433 3679
Q ss_pred EEEEecCCCCC-------CHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQV-------DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~-------~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|.||+|+. ..++..+.... . .....+.+||++|.|+++
T Consensus 111 iilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~------~~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 111 LALVGTQDRISASSPRVVGDARARALXAD----M------KRCSYYETXATYGLNVDR 158 (178)
T ss_dssp EEEEEECTTCBTTBCCCSCHHHHHHHHHH----H------SSEEEEEEBTTTTBTHHH
T ss_pred EEEEEECccccccccCcCCHHHHHHHHHh----h------cCCeEEEEeccccCCHHH
Confidence 99999999983 22332222111 1 123447899999999875
No 96
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.49 E-value=1e-13 Score=126.22 Aligned_cols=146 Identities=13% Similarity=0.187 Sum_probs=88.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCC-CCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIG-PEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~-~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+++|++|||||||+|+|++..+ .... +..+++...... .+.+- +
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~-------------------~~~~~---~-------- 54 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTV-------------------CLDDT---T-------- 54 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CTTCCCCSSEEEEEEEE-------------------EETTE---E--------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCccceEEEEEEE-------------------EECCE---E--------
Confidence 3799999999999999999998775 2111 111111111000 00000 0
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKI 353 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~i 353 (545)
..+.++||||... +..+...++..+|++++++|++.....+....++..+.. .+.|+
T Consensus 55 ---------~~~~~~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i 114 (170)
T 1r2q_A 55 ---------VKFEIWDTAGQER-----------YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114 (170)
T ss_dssp ---------EEEEEEEECCSGG-----------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred ---------EEEEEEeCCCcHH-----------hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 2688999999632 112345678999999999999873323344455555533 36799
Q ss_pred EEEecCCCCCCHHHH--HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQL--MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l--~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+.+...+ .+.. .+. +. .....+.+||++|.|+++
T Consensus 115 ilv~nK~Dl~~~~~~~~~~~~-~~~----~~---~~~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 115 ALSGNKADLANKRAVDFQEAQ-SYA----DD---NSLLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEEEECGGGGGGCCSCHHHHH-HHH----HH---TTCEEEECCTTTCTTHHH
T ss_pred EEEEECccCccccccCHHHHH-HHH----HH---cCCeEEEEeCCCCCCHHH
Confidence 999999998642111 1111 111 11 123347899999999775
No 97
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.49 E-value=8.8e-14 Score=131.79 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=89.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+|+|++|||||||+|+|++..+. ....|+++...... ...+.+ ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~-----------------~~~~~~-----~~------ 56 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT---NDYISTIGVDFKIK-----------------TVELDG-----KT------ 56 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC---TTCCCSSCCCEEEE-----------------EEEETT-----EE------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCcccceeEEE-----------------EEEECC-----EE------
Confidence 348999999999999999999998752 22222222111100 000001 00
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKI 353 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~i 353 (545)
..+.|+||||...-. .+...++..+|++|+++|++..........++..+. ..+.|+
T Consensus 57 ---------~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 116 (206)
T 2bcg_Y 57 ---------VKLQIWDTAGQERFR-----------TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 116 (206)
T ss_dssp ---------EEEEEECCTTTTTTT-----------CCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred ---------EEEEEEeCCChHHHH-----------HHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 168899999974311 122345789999999999987433344445555553 346799
Q ss_pred EEEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+...+. +....+. +..+ ++.+++||++|.|+++
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 117 LLVGNKCDLKDKRVVEYDVAKEFA----DANK---MPFLETSALDSTNVED 160 (206)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHHH----HHTT---CCEEECCTTTCTTHHH
T ss_pred EEEEECCCCccccccCHHHHHHHH----HHcC---CeEEEEeCCCCCCHHH
Confidence 9999999997532110 1111111 1111 2337899999999774
No 98
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.49 E-value=7.5e-14 Score=126.51 Aligned_cols=146 Identities=16% Similarity=0.231 Sum_probs=86.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|++|||||||+|+|++..+ .. ...+++...... ...+.+. .
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~--~~-~~~~~~~~~~~~------------------~~~~~~~----~--------- 50 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTF--IE-KYDPTIEDFYRK------------------EIEVDSS----P--------- 50 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC--CS-CCCTTCCEEEEE------------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--cc-cCCCCcceeEEE------------------EEEECCE----E---------
Confidence 799999999999999999998775 21 122222111100 0000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH----hcCCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----RGHDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L----~~~~~~ii 354 (545)
..+.++||||... +..+...++..+|.+++++|.......+....++..+ ...+.|++
T Consensus 51 -------~~~~l~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 112 (167)
T 1kao_A 51 -------SVLEILDTAGTEQ-----------FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI 112 (167)
T ss_dssp -------EEEEEEECCCTTC-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred -------EEEEEEECCCchh-----------hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 2588999999743 1224456678999999999998632223344444433 23478999
Q ss_pred EEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+..++. .....+. +..+ .+.+.+||++|.|+++
T Consensus 113 lv~nK~Dl~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 113 LVGNKVDLESEREVSSSEGRALA----EEWG---CPFMETSAKSKTMVDE 155 (167)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHH----HHHT---SCEEEECTTCHHHHHH
T ss_pred EEEECCcccccccCCHHHHHHHH----HHhC---CCEEEecCCCCcCHHH
Confidence 999999986432110 1111111 1111 1237899999988774
No 99
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=130.76 Aligned_cols=145 Identities=16% Similarity=0.176 Sum_probs=88.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+. ....++....... ..+.+.+ .
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~---~~~~~t~~~~~~~-----------------~~~~~~~-----~-------- 76 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFS---ERQGSTIGVDFTM-----------------KTLEIQG-----K-------- 76 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------CEEE-----------------EEEEETT-----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCC---CCCCCCcceEEEE-----------------EEEEECC-----E--------
Confidence 48999999999999999999987751 1112221111100 0000001 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~ii 354 (545)
-..+.|+||||... |..+...++..+|++|+++|+++....+....++..+.. .+.|++
T Consensus 77 -------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~pii 138 (201)
T 2hup_A 77 -------RVKLQIWDTAGQER-----------FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL 138 (201)
T ss_dssp -------EEEEEEECCTTCGG-----------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred -------EEEEEEEECCCcHh-----------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 02788999999732 223456778999999999999863222334455555543 568999
Q ss_pred EEecCCCCCCH-----HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDT-----QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~-----~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+. ++..+.. +..+.. ..+.+||++|.|+++
T Consensus 139 lv~NK~Dl~~~~~v~~~~~~~~~--------~~~~~~--~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 139 LIGNKSDLSELREVSLAEAQSLA--------EHYDIL--CAIETSAKDSSNVEE 182 (201)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHH--------HHTTCS--EEEECBTTTTBSHHH
T ss_pred EEEECCccccccccCHHHHHHHH--------HHcCCC--EEEEEeCCCCCCHHH
Confidence 99999998642 2222211 111221 337999999999875
No 100
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.49 E-value=2.6e-14 Score=134.25 Aligned_cols=149 Identities=17% Similarity=0.257 Sum_probs=86.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+ . ....++.+...... ...+.+- .
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~--~-~~~~~t~~~~~~~~-----------------~~~~~~~----~-------- 74 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTF--C-EACKSTVGVDFKIK-----------------TVELRGK----K-------- 74 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-----------CCTTEEEEEE-----------------EEEETTE----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--C-cCCCCccceeEEEE-----------------EEEECCe----E--------
Confidence 3899999999999999999998775 2 11222221111100 0000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH---hcCCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL---RGHDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L---~~~~~~ii 354 (545)
..+.++||||... +..+...++..+|++|+++|+++....+....++..+ ...+.|++
T Consensus 75 --------~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~pii 135 (192)
T 2il1_A 75 --------IRLQIWDTAGQER-----------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELL 135 (192)
T ss_dssp --------EEEEEEEECCSGG-----------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEeCCCcHH-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 2688999999632 2224566788999999999998732222333344433 34578999
Q ss_pred EEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+..++. +....+ .+.+ .....+.+||++|.|+++
T Consensus 136 lV~NK~Dl~~~~~v~~~~~~~~----~~~~--~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 136 LVGNKLDCETDREITRQQGEKF----AQQI--TGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp EEEECGGGGGGCCSCHHHHHHH----HHTS--TTCEEEECBTTTTBSHHH
T ss_pred EEEECcccccccccCHHHHHHH----HHhc--CCCeEEEEeCCCCCCHHH
Confidence 999999986432111 111111 1211 123347899999999875
No 101
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.49 E-value=1.5e-13 Score=127.31 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=88.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|++..+. . ...+ |+....... ..+.+ .
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~~--~-~~~~-t~~~~~~~~-----------------~~~~~-----~-------- 64 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEFV--E-DYEP-TKADSYRKK-----------------VVLDG-----E-------- 64 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC--C-SCCT-TCCEEEEEE-----------------EEETT-----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC--C-cCCC-ccceEEEEE-----------------EEECC-----E--------
Confidence 38999999999999999999987752 1 1112 221111100 00001 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~i 353 (545)
-..+.|+||||... +..+...++..+|++++++|.+..........++..+. ..+.|+
T Consensus 65 -------~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 126 (187)
T 2a9k_A 65 -------EVQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 126 (187)
T ss_dssp -------EEEEEEEECCCTTC-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCE
T ss_pred -------EEEEEEEECCCCcc-----------cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 01688999999743 12245566889999999999986332233444444432 247899
Q ss_pred EEEecCCCCCCHHH--HHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQ--LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~--l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+..+ ..+.. .+. +.. .+..+.+||+++.|+++
T Consensus 127 ilv~nK~Dl~~~~~~~~~~~~-~~~----~~~---~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 127 LLVGNKSDLEDKRQVSVEEAK-NRA----EQW---NVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEEEECGGGGGGCCSCHHHHH-HHH----HHT---TCEEEECCTTTCTTHHH
T ss_pred EEEEECccccccCccCHHHHH-HHH----HHc---CCeEEEeCCCCCCCHHH
Confidence 99999999864211 11111 111 111 12347899999999775
No 102
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.48 E-value=7.4e-14 Score=128.51 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=87.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|++..++ ....|++....... ...+.+- .
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~-----------------~~~~~~~----~-------- 54 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFG---KQYKQTIGLDFFLR-----------------RITLPGN----L-------- 54 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTT---HHHHHTTTSSEEEE-----------------EEEETTT----E--------
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCC---CCCCCceeEEEEEE-----------------EEEeCCC----C--------
Confidence 37999999999999999999998752 11112221111000 0000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc-----CCCe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-----HDDK 352 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~-----~~~~ 352 (545)
-..+.++||||.... ..+...++.++|++++++|+++....+....++..+.. .+.|
T Consensus 55 -------~~~~~~~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 116 (178)
T 2hxs_A 55 -------NVTLQIWDIGGQTIG-----------GKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQP 116 (178)
T ss_dssp -------EEEEEEEECTTCCTT-----------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCC
T ss_pred -------EEEEEEEECCCCccc-----------cchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 027889999997431 11345668999999999999873222333455555543 1344
Q ss_pred -EEEEecCCCCCCH-----HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 -IRVVLNKADQVDT-----QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 -iiiVlNK~D~~~~-----~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+. ++....... . + +..+.+||++|.|+++
T Consensus 117 ~iilv~nK~Dl~~~~~~~~~~~~~~~~~----~----~---~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 117 LVALVGNKIDLEHMRTIKPEKHLRFCQE----N----G---FSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEEECGGGGGGCSSCHHHHHHHHHH----H----T---CEEEEECTTTCTTHHH
T ss_pred eEEEEEEccccccccccCHHHHHHHHHH----c----C---CcEEEEeCCCCCCHHH
Confidence 8999999998642 222222111 1 1 2347899999999875
No 103
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.48 E-value=2.9e-14 Score=134.89 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=86.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+ . ....++++...... ...+.+- .
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~--~-~~~~~t~~~~~~~~-----------------~~~~~~~----~-------- 56 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKF--S-NQYKATIGADFLTK-----------------EVMVDDR----L-------- 56 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC--C-SSCCCCCSEEEEEE-----------------EEESSSC----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC--C-CCCCCcccceEEEE-----------------EEEECCE----E--------
Confidence 3899999999999999999999875 2 22223222111100 0000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc-------CC
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-------HD 350 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~-------~~ 350 (545)
..+.|+||||...- . .+...++..+|++|+++|++..........++..+.. .+
T Consensus 57 --------~~~~l~Dt~G~~~~-----~------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 117 (207)
T 1vg8_A 57 --------VTMQIWDTAGQERF-----Q------SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN 117 (207)
T ss_dssp --------EEEEEEEECSSGGG-----S------CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGG
T ss_pred --------EEEEEEeCCCcHHH-----H------HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCC
Confidence 26889999996321 1 0123457899999999999863222233344444321 36
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 351 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.|+++|+||+|+.+.+...+....+. +. ...+..+.+||++|.|+++
T Consensus 118 ~piilv~nK~Dl~~~~~~~~~~~~~~----~~--~~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 118 FPFVVLGNKIDLENRQVATKRAQAWC----YS--KNNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp SCEEEEEECTTSSCCCSCHHHHHHHH----HH--TTSCCEEECBTTTTBSHHH
T ss_pred CcEEEEEECCCCcccccCHHHHHHHH----Hh--cCCceEEEEeCCCCCCHHH
Confidence 79999999999974211111111111 10 1122348999999999875
No 104
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.48 E-value=1.2e-14 Score=143.45 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=90.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCc-ccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPT-TDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~-t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+|+|.+|||||||+|+|+|... ..++..|+ +|+...... ..+.+
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~~--~~~~~~~~~~t~~~~~~~-----------------~~~~~------------- 70 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQA--FESKLGSQTLTKTCSKSQ-----------------GSWGN------------- 70 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSCC--SCCCTTSCCCCCSCEEEE-----------------EEETT-------------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCceeeeeEEEE-----------------EEeCC-------------
Confidence 4899999999999999999999885 44444443 333222100 00011
Q ss_pred hhcCchhhccCceeecCCCCCChh--hhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC-----
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGE--KQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH----- 349 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sge--kq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~----- 349 (545)
..+.|+||||+.+.. ..+..+. ....+...+..+|++|+|+|+.. +......+++.+.+.
T Consensus 71 ---------~~i~iiDTpG~~~~~~~~~~~~~~--i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~ 137 (260)
T 2xtp_A 71 ---------REIVIIDTPDMFSWKDHCEALYKE--VQRCYLLSAPGPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGEDA 137 (260)
T ss_dssp ---------EEEEEEECCGGGGSSCCCHHHHHH--HHHHHHHHTTCCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGGG
T ss_pred ---------CEEEEEECcCCCCCCCCHHHHHHH--HHHHHHhcCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCchh
Confidence 278999999986521 1111000 01123345789999999999985 455555554544432
Q ss_pred CCeEEEEec-CCCCCCHHHHHHH--------HHHHHHHhccccc-CCccEEEEeeccCCCccCc
Q 009050 350 DDKIRVVLN-KADQVDTQQLMRV--------YGALMWSLGKVLN-TPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 350 ~~~iiiVlN-K~D~~~~~~l~~v--------~~~l~~~l~k~~~-~~~v~~v~iSa~~~~~~~~ 403 (545)
..|+++|+| |+|+... .+... ...+...++.... +.. +++||+++.|+++
T Consensus 138 ~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~SA~~~~gv~~ 197 (260)
T 2xtp_A 138 MGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNN---RAEGSNQDDQVKE 197 (260)
T ss_dssp GGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCT---TCCHHHHHHHHHH
T ss_pred hccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecC---cccccccHHHHHH
Confidence 346666666 9999743 22221 1112222232221 221 5789999988776
No 105
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=1.3e-13 Score=129.20 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=88.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|+|++..++ ....|++...... ...+.+. .
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~------------------~~~~~~~----~-------- 65 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAFP---EEYVPTVFDHYAV------------------SVTVGGK----Q-------- 65 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC---CSCCCSSCCCEEE------------------EEESSSC----E--------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCcccceeEE------------------EEEECCE----E--------
Confidence 38999999999999999999987642 1112222111100 0000110 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhcC--CCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRGH--DDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~~--~~~ii 354 (545)
..+.++||||...-. .+...++.++|++++++|+++........ .++..+... +.|++
T Consensus 66 --------~~~~i~D~~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 126 (194)
T 2atx_A 66 --------YLLGLYDTAGQEDYD-----------RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFL 126 (194)
T ss_dssp --------EEEEEECCCCSSSST-----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE
T ss_pred --------EEEEEEECCCCcchh-----------HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 167899999974311 12234578999999999998732223333 455555543 78999
Q ss_pred EEecCCCCCCHHHHHHHH---------HHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVY---------GALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~---------~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+.....+.+ ......+.+..+...+ +.+||++|.|+++
T Consensus 127 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~Sa~~g~gi~~ 182 (194)
T 2atx_A 127 LIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY--VECSALTQKGLKT 182 (194)
T ss_dssp EEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE--EECCTTTCTTHHH
T ss_pred EEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE--EEeeCCCCCCHHH
Confidence 999999997643221100 0000011111122223 7899999999875
No 106
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.48 E-value=1.4e-13 Score=146.40 Aligned_cols=169 Identities=17% Similarity=0.159 Sum_probs=101.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCC----------cc--cceEEEEeCCCccccCCceeEeec-CCCCCCc
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP----------TT--DRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGL 264 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p----------~t--~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl 264 (545)
..|+++|.+|+|||||+|+|++... .+..... .+ .....++.....+..+|.|+.... .+...+
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~~~--~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYLTG--MVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC--CCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-
Confidence 3899999999999999999987653 3222110 00 011112223333445677664321 111111
Q ss_pred ccccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCcc-------H
Q 009050 265 TTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDIS-------D 337 (545)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~-------~ 337 (545)
..+.|+||||... |...+...+..+|++|+++|+.. +.. .
T Consensus 95 ---------------------~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~-g~~e~~~~~~~ 141 (439)
T 3j2k_7 95 ---------------------KHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARK-GEFETGFEKGG 141 (439)
T ss_pred ---------------------eEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCC-CccccccCCCc
Confidence 3789999999732 22234455789999999999987 322 3
Q ss_pred HHHHHHHHHhcCCCe-EEEEecCCCCCCH----HHHHHHHHHHHHHhcccccC---CccEEEEeeccCCCccCc
Q 009050 338 EFKRVITSLRGHDDK-IRVVLNKADQVDT----QQLMRVYGALMWSLGKVLNT---PEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 338 ~~~~~l~~L~~~~~~-iiiVlNK~D~~~~----~~l~~v~~~l~~~l~k~~~~---~~v~~v~iSa~~~~~~~~ 403 (545)
+..+.+..+...+.| +++|+||+|+.+. +...++...+.. +.+.+++ ..++.+++||++|.|+.+
T Consensus 142 qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~-~l~~~g~~~~~~~~~i~iSA~~G~ni~~ 214 (439)
T 3j2k_7 142 QTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVP-FLKKVGFNPKKDIHFMPCSGLTGANLKE 214 (439)
T ss_pred hHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHH-HHHHhcccccCCeeEEEeeccCCccccc
Confidence 556666666666777 9999999999642 222222222211 1111222 134568999999999987
No 107
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.48 E-value=4.1e-14 Score=131.06 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=87.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+|+|++..+. ....+++ ...... +. .+.+- .
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~~~---~~~~~t~-~~~~~~-----------~~------~~~~~----~--------- 52 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNAFP---GEYIPTV-FDNYSA-----------NV------MVDGK----P--------- 52 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCC---SSCCCCS-CCEEEE-----------EE------EETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---CCcCCcc-cceeEE-----------EE------EECCE----E---------
Confidence 7999999999999999999987642 1112222 111100 00 00010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhcC--CCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRGH--DDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~~--~~~iii 355 (545)
..+.++||||...- ..+...++..+|++++++|++......... .++..+... +.|+++
T Consensus 53 -------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 114 (186)
T 1mh1_A 53 -------VNLGLWDTAGQEDY-----------DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 114 (186)
T ss_dssp -------EEEEEECCCCSGGG-----------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEE
T ss_pred -------EEEEEEECCCCHhH-----------HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEE
Confidence 26789999998321 112234578999999999998632222332 355555442 789999
Q ss_pred EecCCCCCCHHHHHHHHHH---------HHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~---------l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+.....+.... ....+.+..+. ...+++||++|.|+++
T Consensus 115 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~ 169 (186)
T 1mh1_A 115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKT 169 (186)
T ss_dssp EEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHH
T ss_pred EeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCC--cEEEEecCCCccCHHH
Confidence 9999998754322211110 00011121221 2348999999999875
No 108
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=129.91 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=89.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|+|... .....|+++...... . ..+.+. .
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~---~~~~~~~~~~~~~~~-----------~------~~~~~~----~-------- 71 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQG---DSAHEPENPEDTYER-----------R------IMVDKE----E-------- 71 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEEC---CGGGTTTSCTTEEEE-----------E------EEETTE----E--------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccC---CccCCCCcccceEEE-----------E------EEECCE----E--------
Confidence 3899999999999999999988663 222333333222110 0 000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.++||||...-.. .+...++..+|++|+++|.++.........++..+.. .+.|+
T Consensus 72 --------~~l~i~Dt~g~~~~~~----------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 133 (195)
T 3cbq_A 72 --------VTLVVYDIWEQGDAGG----------WLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV 133 (195)
T ss_dssp --------EEEEEECCCCCSGGGH----------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCE
T ss_pred --------EEEEEEecCCCccchh----------hhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 1677899999843110 1334557889999999999863323344556665543 36899
Q ss_pred EEEecCCCCCCHHHH--HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQL--MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l--~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+.+...+ .+. ..+ .+..+ ...+.+||++|.|+++
T Consensus 134 ilv~nK~Dl~~~~~v~~~~~-~~~----a~~~~---~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 134 ILVGNKSDLARSREVSLEEG-RHL----AGTLS---CKHIETSAALHHNTRE 177 (195)
T ss_dssp EEEEECTTCTTTCCSCHHHH-HHH----HHHTT---CEEEEEBTTTTBSHHH
T ss_pred EEEeechhccccCCcCHHHH-HHH----HHHhC---CEEEEEcCCCCCCHHH
Confidence 999999999743111 111 111 11111 2347899999999875
No 109
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.48 E-value=1.2e-13 Score=130.51 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++... ...+..+.|+..... .. ...+.+.. ..
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~~~t~~~~~~------------~~----~~~~~~~~--~~-------- 72 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGS--KFLKDYAMTSGVEVV------------VA----PVTIPDTT--VS-------- 72 (208)
T ss_dssp EEEEEC------------------------------------------------CE----EEECTTSS--EE--------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cccCCCCCccceEEE------------EE----EEEECCcc--cE--------
Confidence 3899999999999999999998832 112221112110000 00 00011100 00
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc------CCC
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG------HDD 351 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~------~~~ 351 (545)
..+.|+||||... +..+...++..+|++|+++|+++....+....++..+.. .+.
T Consensus 73 --------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 133 (208)
T 2yc2_C 73 --------VELFLLDTAGSDL-----------YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL 133 (208)
T ss_dssp --------EEEEEEETTTTHH-----------HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCC
T ss_pred --------EEEEEEECCCcHH-----------HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCC
Confidence 2689999999832 112344567899999999999873333445566666643 478
Q ss_pred eEEEEecCCCCCC-HHHHH-HHHHHHHHHhcccccCCccEEEEeeccC-CCccCc
Q 009050 352 KIRVVLNKADQVD-TQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFN-DKPVNE 403 (545)
Q Consensus 352 ~iiiVlNK~D~~~-~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~-~~~~~~ 403 (545)
|+++|+||+|+.+ ...+. +....+.... + +..+.+||++ |.|+++
T Consensus 134 piilv~nK~Dl~~~~~~v~~~~~~~~~~~~----~---~~~~~~Sa~~~~~gi~~ 181 (208)
T 2yc2_C 134 RAVLVANKTDLPPQRHQVRLDMAQDWATTN----T---LDFFDVSANPPGKDADA 181 (208)
T ss_dssp EEEEEEECC-------CCCHHHHHHHHHHT----T---CEEEECCC-------CH
T ss_pred cEEEEEECcccchhhccCCHHHHHHHHHHc----C---CEEEEeccCCCCcCHHH
Confidence 9999999999976 22110 1111111111 1 3448899999 999885
No 110
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.48 E-value=3.4e-14 Score=134.90 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=88.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+|++++..+. +..+.|+...... + ..+.+. .
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~~~----~~~~~t~~~~~~~-----------~------~~~~~~----~--------- 77 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSA-----------N------VMVDGK----P--------- 77 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCC----C-CCCCSEEEEEE-----------E------EECC-C----E---------
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC----CCcCCeecceeEE-----------E------EEECCE----E---------
Confidence 8999999999999999999987642 2222222221110 0 000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhcC--CCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRGH--DDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~~--~~~iii 355 (545)
..+.++||||...- ..+...++..+|++++++|+++.....+.. .++..+... +.|+++
T Consensus 78 -------~~l~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 139 (204)
T 4gzl_A 78 -------VNLGLWDTAGLEDY-----------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 139 (204)
T ss_dssp -------EEEEEEEECCSGGG-----------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEE
T ss_pred -------EEEEEEECCCchhh-----------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 15679999998321 112334578999999999998732222332 455555443 789999
Q ss_pred EecCCCCCCHHHHHHHHHH---------HHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~---------l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+.....+.... ....+.+..+.. +.+.+||++|.|+++
T Consensus 140 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~SA~~g~gi~~ 194 (204)
T 4gzl_A 140 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV--KYLECSALTQRGLKT 194 (204)
T ss_dssp EEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS--EEEECCTTTCTTHHH
T ss_pred EEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCc--EEEEeeCCCCCCHHH
Confidence 9999998764432221111 000111222222 238999999999875
No 111
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=9.9e-14 Score=129.90 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=90.0
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
....|+|+|.+|||||||+|+|++..+.... .+..+++....... ....+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~-----------------~~~~~------------ 71 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAF-VSTVGIDFKVKTVY-----------------RHEKR------------ 71 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCE-EEEETTTEEEEEEE-----------------ETTTT------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCccc-CCCeeeEEEEEEEE-----------------ECCEE------------
Confidence 3448999999999999999999998752110 01011111111000 00000
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCe
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDK 352 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~ 352 (545)
..+.|+||||.. . +..+...++..+|++++++|+++....+....++..+.. .+.|
T Consensus 72 ----------~~~~i~Dt~G~~---~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 130 (191)
T 3dz8_A 72 ----------VKLQIWDTAGQE---R--------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ 130 (191)
T ss_dssp ----------EEEEEECHHHHH---H--------CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE
T ss_pred ----------EEEEEEeCCChH---H--------HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 268899999941 1 223556778999999999999863333344555555544 5789
Q ss_pred EEEEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+..... .....+. +..+ +..+.+||++|.|+++
T Consensus 131 iilv~nK~Dl~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 131 VILVGNKCDMEEERVVPTEKGQLLA----EQLG---FDFFEASAKENISVRQ 175 (191)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHH----HHHT---CEEEECBTTTTBSHHH
T ss_pred EEEEEECCCCccccccCHHHHHHHH----HHcC---CeEEEEECCCCCCHHH
Confidence 99999999986421110 1111111 1111 2348899999999875
No 112
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.47 E-value=1.5e-13 Score=125.42 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=81.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+|+|++... ......+.+...... ...+.+. .
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~------------------~~~~~~~----~--------- 50 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG--DHAHEMENSEDTYER------------------RIMVDKE----E--------- 50 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--------------CEEEE------------------EEEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhccC--cccccCCCcCCeeeE------------------EEEECCe----E---------
Confidence 699999999999999999998764 222221111111100 0000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~ii 354 (545)
..+.++||||...... . +...++..+|++++++|.++....+....++..+.. .+.|++
T Consensus 51 -------~~~~i~D~~g~~~~~~-~---------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 113 (169)
T 3q85_A 51 -------VTLIVYDIWEQGDAGG-W---------LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 113 (169)
T ss_dssp -------EEEEEECCCCC------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE
T ss_pred -------EEEEEEECCCccccch-h---------hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEE
Confidence 2678999999843111 0 122346779999999999873323334455555433 368999
Q ss_pred EEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+..++.. ....+ .+..+ ...+.+||++|.|+++
T Consensus 114 lv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 114 LVGNKSDLARSREVSLEEGRHL----AGTLS---CKHIETSAALHHNTRE 156 (169)
T ss_dssp EEEECTTCGGGCCSCHHHHHHH----HHHTT---CEEEECBTTTTBSHHH
T ss_pred EEeeCcchhhcccCCHHHHHHH----HHHcC---CcEEEecCccCCCHHH
Confidence 9999999864211110 11111 11112 2348999999999875
No 113
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.47 E-value=3.3e-13 Score=125.92 Aligned_cols=143 Identities=14% Similarity=0.180 Sum_probs=83.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|+|++..+ .. ...+ |+...... ...+.+- .
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~--~~-~~~~-t~~~~~~~-----------------~~~~~~~----~-------- 68 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF--VD-EYDP-TIEDSYRK-----------------QVVIDGE----T-------- 68 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC--CS-CCCT-TCCEEEEE-----------------EEEETTE----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC--cc-ccCC-ccceEEEE-----------------EEEECCE----E--------
Confidence 3899999999999999999998774 21 1112 22211110 0000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.++||||... +..+...++..+|++++++|............++..+.. .+.|+
T Consensus 69 --------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ 129 (190)
T 3con_A 69 --------CLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM 129 (190)
T ss_dssp --------EEEEEEECCC----------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE
T ss_pred --------EEEEEEECCChHH-----------HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 2588999999632 111345568899999999999863222334444444432 46899
Q ss_pred EEEecCCCCCCH----HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDT----QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~----~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+. ++..+.... .+. ..+.+||++|.|+++
T Consensus 130 ilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~---~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 130 VLVGNKCDLPTRTVDTKQAHELAKS--------YGI---PFIETSAKTRQGVED 172 (190)
T ss_dssp EEEEECTTCSCCCSCHHHHHHHHHH--------HTC---CEEECCTTTCTTHHH
T ss_pred EEEEECCcCCcccCCHHHHHHHHHH--------cCC---eEEEEeCCCCCCHHH
Confidence 999999998752 222222211 111 237999999998774
No 114
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.47 E-value=1.1e-13 Score=132.35 Aligned_cols=161 Identities=21% Similarity=0.210 Sum_probs=90.3
Q ss_pred ccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhh
Q 009050 195 DAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSK 274 (545)
Q Consensus 195 ~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~ 274 (545)
+....|+|+|.+|||||||+|+|++..+. ....++....... ..+......+..+....
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~---~~~~~t~~~~~~~-----------~~~~~~~~~~~~~~~~~------- 81 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN---PKFITTVGIDFRE-----------KRVVYNAQGPNGSSGKA------- 81 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCC---CEEEEEEEEEEEE-----------EEEEEEC-------CCE-------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCC---cCCCCceeEEEEE-----------EEEEECCccccccccCc-------
Confidence 33458999999999999999999987741 1111111100000 00000000000000000
Q ss_pred hhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CC
Q 009050 275 FECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HD 350 (545)
Q Consensus 275 ~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~ 350 (545)
.-..+.|+||||.. + |..+...++..+|++|+++|++..........++..+.. .+
T Consensus 82 ---------~~~~l~l~Dt~G~~---~--------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~ 141 (217)
T 2f7s_A 82 ---------FKVHLQLWDTAGQE---R--------FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 141 (217)
T ss_dssp ---------EEEEEEEEEEESHH---H--------HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTC
T ss_pred ---------eeEEEEEEECCCcH---h--------HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCC
Confidence 00268999999952 1 223456778999999999999873323344455555543 46
Q ss_pred CeEEEEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 351 DKIRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.|+++|+||+|+.+..++ .+....+. +..+ +..+.+||+++.|+++
T Consensus 142 ~piilV~NK~Dl~~~~~v~~~~~~~~~----~~~~---~~~~~~Sa~~g~gi~~ 188 (217)
T 2f7s_A 142 PDIVLIGNKADLPDQREVNERQARELA----DKYG---IPYFETSAATGQNVEK 188 (217)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHH----HHTT---CCEEEEBTTTTBTHHH
T ss_pred CCEEEEEECCccccccccCHHHHHHHH----HHCC---CcEEEEECCCCCCHHH
Confidence 799999999998653111 01111111 1111 2337899999999875
No 115
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=130.68 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=89.6
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
....|+|+|.+|||||||+|+|++..+ . ....+++ ....... ..+.+- .
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~-~~~~~t~-~~~~~~~-----------------~~~~~~----~------ 71 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEF--S-EGYDPTV-ENTYSKI-----------------VTLGKD----E------ 71 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--C-SCCCCCS-EEEEEEE-----------------EC--------C------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCC--C-CCCCCcc-ceEEEEE-----------------EEECCE----E------
Confidence 344899999999999999999999885 2 2222222 1111100 000000 0
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC----CC
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH----DD 351 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~----~~ 351 (545)
..+.|+||||...-.. +...++..+|++++++|.+.....+....++..+... +.
T Consensus 72 ----------~~~~l~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 130 (201)
T 3oes_A 72 ----------FHLHLVDTAGQDEYSI-----------LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV 130 (201)
T ss_dssp ----------EEEEEEEECCCCTTCC-----------CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CC
T ss_pred ----------EEEEEEECCCccchHH-----------HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2678999999743110 1234578999999999998743334555666666543 67
Q ss_pred eEEEEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 352 KIRVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 352 ~iiiVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+++|+||+|+.+...+.. ....+. +..+ ...+.+||++|.|+++
T Consensus 131 piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~---~~~~~~Sa~~~~~v~~ 176 (201)
T 3oes_A 131 PVVLVGNKADLSPEREVQAVEGKKLA----ESWG---ATFMESSARENQLTQG 176 (201)
T ss_dssp CEEEEEECTTCGGGCCSCHHHHHHHH----HHHT---CEEEECCTTCHHHHHH
T ss_pred CEEEEEECccCccccccCHHHHHHHH----HHhC---CeEEEEeCCCCCCHHH
Confidence 9999999999874321110 011111 1111 2347899999988775
No 116
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=130.34 Aligned_cols=148 Identities=20% Similarity=0.227 Sum_probs=85.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|++..+. ....+...++..... ..+.+- .
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~-------------------~~~~~~----~-------- 76 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNEFR-ENISATLGVDFQMKT-------------------LIVDGE----R-------- 76 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEE-------------------EEETTE----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCCccceeEEEE-------------------EEECCE----E--------
Confidence 48999999999999999999988752 111111111111000 000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~ii 354 (545)
..+.|+||||... +..+...++..+|++|+++|+++.........++..+. ..+.|++
T Consensus 77 --------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 137 (199)
T 2p5s_A 77 --------TVLQLWDTAGQER-----------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIM 137 (199)
T ss_dssp --------EEEEEEECTTCTT-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEE
T ss_pred --------EEEEEEECCCCcc-----------hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 2688999999742 22245566889999999999986332233444555443 2468999
Q ss_pred EEecCCCCCCHHH------H-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQ------L-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~------l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+... + .+....+ .+.. .+..+.+||++|.|+++
T Consensus 138 lv~NK~Dl~~~~~~~~~~~v~~~~~~~~----~~~~---~~~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 138 LVGNKADIRDTAATEGQKCVPGHFGEKL----AMTY---GALFCETSAKDGSNIVE 186 (199)
T ss_dssp EEEECGGGHHHHHHTTCCCCCHHHHHHH----HHHH---TCEEEECCTTTCTTHHH
T ss_pred EEEECcccccccccccccccCHHHHHHH----HHHc---CCeEEEeeCCCCCCHHH
Confidence 9999999863211 0 0011111 1111 12347899999999775
No 117
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.46 E-value=6.1e-13 Score=126.72 Aligned_cols=115 Identities=17% Similarity=0.280 Sum_probs=70.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..++ . ..++++.....+ .+.+- ..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~~~--~--~~~~~~~~~~~~-------------------~~~~~---~~-------- 53 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQYR--D--TQTSITDSSAIY-------------------KVNNN---RG-------- 53 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC--C--BCCCCSCEEEEE-------------------ECSST---TC--------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcc--c--ccCCcceeeEEE-------------------EecCC---Cc--------
Confidence 48999999999999999999987752 1 112222111100 00000 00
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHH-HHHHHhcCCCEEEEEeCCCCCC-ccHHHHHHHHHH------hcC
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTG-VTSWFAAKCDLILLLFDPHKLD-ISDEFKRVITSL------RGH 349 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~-ia~~~~~~aDliLlvlD~~~~~-~~~~~~~~l~~L------~~~ 349 (545)
..+.++||||... |.. +...++..+|++|+++|++... ......+++..+ ...
T Consensus 54 --------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (214)
T 2fh5_B 54 --------NSLTLIDLPGHES-----------LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKN 114 (214)
T ss_dssp --------CEEEEEECCCCHH-----------HHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred --------cEEEEEECCCChh-----------HHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhccc
Confidence 2689999999832 111 3455689999999999998621 011222222221 134
Q ss_pred CCeEEEEecCCCCCCH
Q 009050 350 DDKIRVVLNKADQVDT 365 (545)
Q Consensus 350 ~~~iiiVlNK~D~~~~ 365 (545)
+.|+++|+||+|+.+.
T Consensus 115 ~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 115 SPSLLIACNKQDIAMA 130 (214)
T ss_dssp CCEEEEEEECTTSTTC
T ss_pred CCCEEEEEECCCCCCc
Confidence 6899999999999754
No 118
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.46 E-value=9.7e-14 Score=128.35 Aligned_cols=143 Identities=16% Similarity=0.153 Sum_probs=84.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+. ....| |........ ..+.+.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~~---~~~~~-t~~~~~~~~-----------------~~~~~~------------- 52 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQFV---DSYDP-TIENTFTKL-----------------ITVNGQ------------- 52 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC---SCCCT-TCCEEEEEE-----------------EEETTE-------------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC---CCCCC-CccccEEEE-----------------EEECCE-------------
Confidence 48999999999999999999976642 11112 221111100 000010
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH----hcCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----RGHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L----~~~~~~i 353 (545)
-..+.++||||..... . +...++..+|++++++|.++....+....++..+ ...+.|+
T Consensus 53 -------~~~~~l~Dt~G~~~~~--~---------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 114 (181)
T 3t5g_A 53 -------EYHLQLVDTAGQDEYS--I---------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI 114 (181)
T ss_dssp -------EEEEEEEECCCCCTTC--C---------CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCE
T ss_pred -------EEEEEEEeCCCchhhh--H---------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 0267899999975311 0 1234578999999999998733333444444444 2346899
Q ss_pred EEEecCCCCCCH-----HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDT-----QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~-----~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+. ++..+.. +..+ ...+.+||++|.|+++
T Consensus 115 ilv~nK~Dl~~~~~~~~~~~~~~~--------~~~~---~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 115 MLVGNKKDLHMERVISYEEGKALA--------ESWN---AAFLESSAKENQTAVD 158 (181)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHHH--------HHTT---CEEEECCTTSHHHHHH
T ss_pred EEEEECccchhcceecHHHHHHHH--------HHhC---CcEEEEecCCCCCHHH
Confidence 999999998642 2222211 1111 2347899999988775
No 119
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.46 E-value=1.2e-13 Score=129.47 Aligned_cols=144 Identities=19% Similarity=0.154 Sum_probs=87.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|+|++..++ ....|++ ...... ...+.+- .
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~~---~~~~~t~-~~~~~~-----------------~~~~~~~----~-------- 70 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEIP---TAYVPTV-FENFSH-----------------VMKYKNE----E-------- 70 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC---SSCCCCS-EEEEEE-----------------EEEETTE----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC---CccCCee-eeeeEE-----------------EEEECCE----E--------
Confidence 38999999999999999999998742 1122222 111100 0000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHH-HHHHHHHhc--CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRG--HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~-~~~l~~L~~--~~~~ii 354 (545)
..+.++||||...- ..+...++.++|++++++|+++....... ..++..+.. .+.|++
T Consensus 71 --------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i 131 (194)
T 3reg_A 71 --------FILHLWDTAGQEEY-----------DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV 131 (194)
T ss_dssp --------EEEEEEEECCSGGG-----------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEE
T ss_pred --------EEEEEEECCCcHHH-----------HHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 15789999996321 11233457899999999999873222222 334444443 367999
Q ss_pred EEecCCCCCCH-------HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDT-------QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~-------~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+.+. ++..+.. +..+...+ +.+||++|.|+++
T Consensus 132 lv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~--~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 132 LVGLKVDLRKDGSDDVTKQEGDDLC--------QKLGCVAY--IEASSVAKIGLNE 177 (194)
T ss_dssp EEEECGGGCCTTTTCCCHHHHHHHH--------HHHTCSCE--EECBTTTTBSHHH
T ss_pred EEEEChhhccCCCCcccHHHHHHHH--------HhcCCCEE--EEeecCCCCCHHH
Confidence 99999998642 2222221 22223334 7999999999875
No 120
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.46 E-value=4.7e-13 Score=124.94 Aligned_cols=145 Identities=16% Similarity=0.190 Sum_probs=84.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccc-eEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDR-FVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r-~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+|+|.+|||||||+|+|++..+ .. ...++... .... ...+.+ .
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~--~~-~~~~t~~~~~~~~------------------~~~~~~-----~------- 67 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRF--PD-RTEATIGVDFRER------------------AVDIDG-----E------- 67 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC--CS-SCCCCCSCCEEEE------------------EEEETT-----E-------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC--CC-CCCCCcceEEEEE------------------EEEECC-----E-------
Confidence 4899999999999999999998775 21 11222111 1100 000001 0
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCe
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDK 352 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~ 352 (545)
-..+.|+||||.. +.+. .+...++..+|++|+++|+++....+....++..+. ..+.|
T Consensus 68 --------~~~~~l~Dt~G~~---~~~~-------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p 129 (189)
T 1z06_A 68 --------RIKIQLWDTAGQE---RFRK-------SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP 129 (189)
T ss_dssp --------EEEEEEEECCCSH---HHHT-------TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC
T ss_pred --------EEEEEEEECCCch---hhhh-------hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 0268899999962 2110 135567899999999999986322233344444442 35689
Q ss_pred EEEEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCc
Q 009050 353 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKP 400 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~ 400 (545)
+++|+||+|+.+..++. +....+ .+..+ +..+.+||+++.+
T Consensus 130 iilv~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~~~~ 171 (189)
T 1z06_A 130 RILVGNKCDLRSAIQVPTDLAQKF----ADTHS---MPLFETSAKNPND 171 (189)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHH----HHHTT---CCEEECCSSSGGG
T ss_pred EEEEEECccccccceeCHHHHHHH----HHHcC---CEEEEEeCCcCCc
Confidence 99999999986431110 111111 11111 2337899999943
No 121
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.45 E-value=3e-13 Score=125.27 Aligned_cols=142 Identities=13% Similarity=0.189 Sum_probs=86.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|.+|||||||+|+|++..+ .....+++...... . ..+.+ .
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~~---~~~~~~t~~~~~~~-~-----------------~~~~~-----~--------- 64 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKIF---VDDYDPTIEDSYLK-H-----------------TEIDN-----Q--------- 64 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEE-E-----------------EEETT-----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCCCCCCccceeEE-E-----------------EEeCC-----c---------
Confidence 899999999999999999998764 22222322211110 0 00001 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH----hcCCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL----RGHDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L----~~~~~~ii 354 (545)
-..+.++||||... +..+...++..+|++++++|.++....+....++..+ ...+.|++
T Consensus 65 ------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 127 (183)
T 3kkq_A 65 ------WAILDVLDTAGQEE-----------FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127 (183)
T ss_dssp ------EEEEEEEECCSCGG-----------GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE
T ss_pred ------EEEEEEEECCCchh-----------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 01567899999632 1113455678999999999998732222233444433 34577999
Q ss_pred EEecCCCCCCH-----HHHHHHHHHHHHHhcccccCCccEEEEeecc-CCCccCc
Q 009050 355 VVLNKADQVDT-----QQLMRVYGALMWSLGKVLNTPEVVRVYIGSF-NDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~-----~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~-~~~~~~~ 403 (545)
+|+||+|+.+. ++..+.... .+ ++.+.+||+ ++.|+++
T Consensus 128 lv~nK~Dl~~~~~v~~~~~~~~~~~--------~~---~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 128 LVANKVDLMHLRKVTRDQGKEMATK--------YN---IPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEECTTCSTTCCSCHHHHHHHHHH--------HT---CCEEEEBCSSSCBSHHH
T ss_pred EEEECCCchhccCcCHHHHHHHHHH--------hC---CeEEEeccCCCCCCHHH
Confidence 99999998642 222222211 11 223789999 9998875
No 122
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.45 E-value=9.7e-14 Score=131.25 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=88.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|.+|||||||+|++++..++ ....|++...... . ..+.+- .
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~------------~------~~~~~~----~--------- 72 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQFP---EVYVPTVFENYIA------------D------IEVDGK----Q--------- 72 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCC---SSCCCSSCCCCEE------------E------EEETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC---cccCCcccceEEE------------E------EEECCE----E---------
Confidence 8999999999999999999998752 1222322211100 0 000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHH-HHHHHHHhcC--CCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRGH--DDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~-~~~l~~L~~~--~~~iii 355 (545)
..+.|+||||...- + .+...++..+|++++++|.+........ ..++..+... +.|+++
T Consensus 73 -------~~l~i~Dt~G~~~~---~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 134 (201)
T 2gco_A 73 -------VELALWDTAGQEDY---D--------RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 134 (201)
T ss_dssp -------EEEEEECCCCSGGG---T--------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEE
T ss_pred -------EEEEEEECCCchhH---H--------HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 26889999996321 0 1223457899999999999863222222 3445555433 789999
Q ss_pred EecCCCCCCHHHHHHHHHH---------HHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~---------l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+.....+.... ....+.+..+.. ..+.+||++|.|+++
T Consensus 135 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~SA~~g~gi~~ 189 (201)
T 2gco_A 135 VGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAF--GYLECSAKTKEGVRE 189 (201)
T ss_dssp EEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCS--EEEECCTTTCTTHHH
T ss_pred EEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCc--EEEEeeCCCCCCHHH
Confidence 9999999865332221110 000111111221 337899999999875
No 123
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=4.6e-14 Score=134.17 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=87.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|||||||+|+|++..+ . ....|++...... ...+.+. .
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~--~-~~~~~t~~~~~~~------------------~~~~~~~----~--------- 72 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDEF--P-EVYVPTVFENYVA------------------DIEVDGK----Q--------- 72 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC--C--------CCEEEE------------------EEEETTE----E---------
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--C-CcCCCcccceEEE------------------EEEECCE----E---------
Confidence 899999999999999999999875 2 1122222211110 0000010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHH-HHHHHHHhcC--CCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRGH--DDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~-~~~l~~L~~~--~~~iii 355 (545)
..+.|+||||...-. .+...++..+|++++++|.+........ ..++..+... +.|+++
T Consensus 73 -------~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 134 (207)
T 2fv8_A 73 -------VELALWDTAGQEDYD-----------RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIIL 134 (207)
T ss_dssp -------EEEEEEECTTCTTCT-----------TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEE
T ss_pred -------EEEEEEECCCcHHHH-----------HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 268899999974311 1223457899999999999863222223 3455555432 689999
Q ss_pred EecCCCCCCHHHHHHHHHHH---------HHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGAL---------MWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l---------~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+.....+....+ ...+.+..... ..+.+||++|.|+++
T Consensus 135 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~SA~~g~gi~e 189 (207)
T 2fv8_A 135 VANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAY--DYLECSAKTKEGVRE 189 (207)
T ss_dssp EEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS--EEEECCTTTCTTHHH
T ss_pred EEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCC--EEEEeeCCCCCCHHH
Confidence 99999997654332221110 00011111111 337899999999875
No 124
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.45 E-value=1.2e-12 Score=122.21 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=86.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|.+|||||||+|++++..+. ....|+....... + .+.+. .
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~---~~~~~t~~~~~~~-------------~------~~~~~----~--------- 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYV---QEESPEGGRFKKE-------------I------VVDGQ----S--------- 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCC---CCCCTTCEEEEEE-------------E------EETTE----E---------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---CCcCCCcceEEEE-------------E------EECCE----E---------
Confidence 8999999999999999999988752 1122221111100 0 00110 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC----CCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH----DDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~----~~~ii 354 (545)
..+.++||||...- + ++..+|++++++|.++....+....++..+... +.|++
T Consensus 67 -------~~l~i~Dt~G~~~~---~-------------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 123 (184)
T 3ihw_A 67 -------YLLLIRDEGGPPEL---Q-------------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMV 123 (184)
T ss_dssp -------EEEEEEECSSSCCH---H-------------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEE
T ss_pred -------EEEEEEECCCChhh---h-------------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 15788999998421 0 357799999999998743334445677777553 56999
Q ss_pred EEecCCCCC-------CHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQV-------DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~-------~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|.||+|+. ..++..+... ..+ ....+.+||++|.|+++
T Consensus 124 lv~nK~Dl~~~~~~~v~~~~~~~~~~--------~~~--~~~~~e~Sa~~~~gv~~ 169 (184)
T 3ihw_A 124 LVGTQDAISAANPRVIDDSRARKLST--------DLK--RCTYYETCATYGLNVER 169 (184)
T ss_dssp EEEECTTCBTTBCCCSCHHHHHHHHH--------HTT--TCEEEEEBTTTTBTHHH
T ss_pred EEEECcccccccccccCHHHHHHHHH--------HcC--CCeEEEecCCCCCCHHH
Confidence 999999984 2222222211 111 12347899999999875
No 125
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=129.02 Aligned_cols=147 Identities=16% Similarity=0.222 Sum_probs=84.2
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccc-eEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDR-FVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r-~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
...|+|+|.+|||||||+|+|++..+ .. ...++++. +... ...+.+ .
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~--~~-~~~~t~~~~~~~~------------------~~~~~~-----~------ 72 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKF--KQ-DSNHTIGVEFGSR------------------VVNVGG-----K------ 72 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC---------------CCEEEE------------------EEEETT-----E------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC--Cc-cCCCcccceeEEE------------------EEEECC-----e------
Confidence 34899999999999999999998775 21 12222211 1100 000001 0
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCe
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDK 352 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~ 352 (545)
-..+.|+||||.. + .. .+...++..+|++|+++|+++.........++..+. ..+.|
T Consensus 73 ---------~~~l~l~Dt~G~~---~--~~------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 132 (200)
T 2o52_A 73 ---------TVKLQIWDTAGQE---R--FR------SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV 132 (200)
T ss_dssp ---------EEEEEEECCTTHH---H--HS------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE
T ss_pred ---------eeEEEEEcCCCcH---h--HH------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 0268899999952 1 11 123456889999999999987322233445555443 34789
Q ss_pred EEEEecCCCCCCHHHH--HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQL--MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l--~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.+...+ .+.. .+. +.. .+..+.+||++|.|+++
T Consensus 133 iilv~nK~Dl~~~~~v~~~~~~-~~~----~~~---~~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 133 VILCGNKKDLDPEREVTFLEAS-RFA----QEN---ELMFLETSALTGENVEE 177 (200)
T ss_dssp EEEEEECGGGGGGCCSCHHHHH-HHH----HHT---TCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCcccccccCHHHHH-HHH----HHc---CCEEEEEeCCCCCCHHH
Confidence 9999999998642111 1111 111 111 23447899999999875
No 126
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=6.8e-13 Score=124.71 Aligned_cols=142 Identities=14% Similarity=0.140 Sum_probs=87.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+ .. ...|++...... . ..+.+- .
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~--~~-~~~~t~~~~~~~------------~------~~~~~~----~-------- 75 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRF--IW-EYDPTLESTYRH------------Q------ATIDDE----V-------- 75 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC--CS-CCCTTCCEEEEE------------E------EEETTE----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--Cc-ccCCCCCceEEE------------E------EEECCE----E--------
Confidence 3899999999999999999999875 21 112222111100 0 000000 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~i 353 (545)
..+.++||||... . .....++..+|++++++|+++....+....++..+. ..+.|+
T Consensus 76 --------~~~~l~Dt~G~~~---~---------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi 135 (196)
T 2atv_A 76 --------VSMEILDTAGQED---T---------IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL 135 (196)
T ss_dssp --------EEEEEEECCCCCC---C---------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCE
T ss_pred --------EEEEEEECCCCCc---c---------cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcE
Confidence 2688999999854 1 134556789999999999987332233334444432 247899
Q ss_pred EEEecCCCCCCH-----HHHHHHHHHHHHHhcccccCCccEEEEeeccCCC-ccCc
Q 009050 354 RVVLNKADQVDT-----QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDK-PVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~-----~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~-~~~~ 403 (545)
++|+||+|+.+. ++..+... .. .+..+.+||++|. |+++
T Consensus 136 ilv~NK~Dl~~~~~v~~~~~~~~~~--------~~---~~~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 136 ILVGNKADLDHSRQVSTEEGEKLAT--------EL---ACAFYECSACTGEGNITE 180 (196)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHH--------HH---TSEEEECCTTTCTTCHHH
T ss_pred EEEEECcccccccccCHHHHHHHHH--------Hh---CCeEEEECCCcCCcCHHH
Confidence 999999998652 22222111 11 1234789999999 8774
No 127
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.45 E-value=2.6e-14 Score=146.75 Aligned_cols=153 Identities=19% Similarity=0.208 Sum_probs=93.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
+.|+|+|.+|||||||+|+|++.. ..++..|.||..... +.......
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~---~~i~~~~ftTl~p~~-----------------------g~v~~~~~------- 205 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAK---PKIADYHFTTLVPNL-----------------------GMVETDDG------- 205 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEEC---CEESSTTSSCCCCCE-----------------------EEEECSSS-------
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCC---CccccCCccccCceE-----------------------EEEEeCCC-------
Confidence 479999999999999999999887 344555544432211 00000000
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCC---CCccHHHHHHHHHHhc-----C
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK---LDISDEFKRVITSLRG-----H 349 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~---~~~~~~~~~~l~~L~~-----~ 349 (545)
..+.|+||||+.++..+...... .....++++|++|+|+|++. .+..+....++..+.. .
T Consensus 206 --------~~~~l~DtPG~i~~a~~~~~l~~----~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~ 273 (342)
T 1lnz_A 206 --------RSFVMADLPGLIEGAHQGVGLGH----QFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLT 273 (342)
T ss_dssp --------CEEEEEEHHHHHHHTTCTTTTHH----HHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTT
T ss_pred --------ceEEEecCCCCcccccccchhHH----HHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhc
Confidence 26889999998543211111000 11123567999999999975 3344555566666654 3
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 350 DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 350 ~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+.|+++|+||+|+.+..+.. ..+...+... ..+ +++||+++.++++
T Consensus 274 ~~p~ilV~NK~Dl~~~~e~~---~~l~~~l~~~---~~v--~~iSA~tg~gi~e 319 (342)
T 1lnz_A 274 ERPQIIVANKMDMPEAAENL---EAFKEKLTDD---YPV--FPISAVTREGLRE 319 (342)
T ss_dssp TSCBCBEEECTTSTTHHHHH---HHHHHHCCSC---CCB--CCCSSCCSSTTHH
T ss_pred CCCEEEEEECccCCCCHHHH---HHHHHHhhcC---CCE--EEEECCCCcCHHH
Confidence 67999999999998754321 1221112211 233 7899999999885
No 128
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.45 E-value=4.6e-14 Score=134.98 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=86.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+. ....+...++......... .+ .
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------------------~~-----~-------- 59 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDD------------------QG-----N-------- 59 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBT------------------TS-----C--------
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeC------------------CC-----c--------
Confidence 38999999999999999999987641 1111111111111110000 00 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHH---hcCCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSL---RGHDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L---~~~~~~ii 354 (545)
...+.++||||... .+ .+...++..+|++|+++|+++.........++..+ ...+.|++
T Consensus 60 -------~~~~~l~Dt~G~~~---~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 121 (218)
T 4djt_A 60 -------VIKFNVWDTAGQEK---KA--------VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIV 121 (218)
T ss_dssp -------EEEEEEEEECSGGG---TS--------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEE
T ss_pred -------EEEEEEEecCCchh---hc--------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 01588999999632 11 12345678999999999998732223333444444 34468999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+..++..... ..+.+.. ....+.+||++|.|+++
T Consensus 122 lv~nK~Dl~~~~~~~~~~~---~~~~~~~---~~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 122 VCANKIDIKNRQKISKKLV---MEVLKGK---NYEYFEISAKTAHNFGL 164 (218)
T ss_dssp EEEECTTCC----CCHHHH---HHHTTTC---CCEEEEEBTTTTBTTTH
T ss_pred EEEECCCCccccccCHHHH---HHHHHHc---CCcEEEEecCCCCCHHH
Confidence 9999999986433221111 1112222 23348999999999886
No 129
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=140.60 Aligned_cols=145 Identities=16% Similarity=0.176 Sum_probs=89.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|.+|||||||+|+|++..+ +...|+....... ....+
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~----~~~~pT~~~~~~~-------------------~~~~~--------------- 208 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVET-------------------VEYKN--------------- 208 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC----EEEEEETTEEEEE-------------------EEETT---------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCC----CCcccccceEEEE-------------------EecCc---------------
Confidence 899999999999999999988764 1122221111100 00011
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh-c---CCCeEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR-G---HDDKIR 354 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~-~---~~~~ii 354 (545)
..+.|+||||... |..+...++..+|++|+|+|+++.........++..+. . .+.|++
T Consensus 209 -------~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii 270 (329)
T 3o47_A 209 -------ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 270 (329)
T ss_dssp -------EEEEEEECC----------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEE
T ss_pred -------EEEEEEECCCCHh-----------HHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEE
Confidence 2688999999532 11134567899999999999987444444444444442 2 378999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.....++...+ +.. .....++.+.+||++|.|+++
T Consensus 271 lV~NK~Dl~~~~~~~~i~~~~----~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 271 VFANKQDLPNAMNAAEITDKL----GLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEEECTTSTTCCCHHHHHHHH----TCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEECccCCcccCHHHHHHHh----chhhhhcCCCEEEEEECCCCcCHHH
Confidence 999999998643333333222 222 122344558899999999875
No 130
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.45 E-value=2e-13 Score=138.34 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=94.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|++++... ..++..+.+|....... ..+.+ .
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~--~~~~~~~~~Ti~~~~~~-----------------~~~~~-----~-------- 51 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYS--AFDTRRLGATIDVEHSH-----------------LRFLG-----N-------- 51 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCC--TGGGGGCCCCCSEEEEE-----------------EEETT-----T--------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CccccCcCCccceEEEE-----------------EEeCC-----c--------
Confidence 4799999999999999999998754 44444444443322100 00001 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHH---HHHHhc--CCCe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRV---ITSLRG--HDDK 352 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~---l~~L~~--~~~~ 352 (545)
..+.+|||||...- .... +..+...++.++|++|+++|+++....+....+ +..+.. .+.|
T Consensus 52 --------~~l~i~Dt~G~~~~----~~~~--~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p 117 (307)
T 3r7w_A 52 --------MTLNLWDCGGQDVF----MENY--FTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK 117 (307)
T ss_dssp --------EEEEEEEECCSHHH----HHHH--HTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred --------eEEEEEECCCcHHH----hhhh--hhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe
Confidence 27899999997321 0000 012456678999999999999874433444333 444432 3689
Q ss_pred EEEEecCCCCCCHHHHH---HHHHHHHHHhcccccCCccEEEEeeccCCCccC
Q 009050 353 IRVVLNKADQVDTQQLM---RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVN 402 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~---~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~ 402 (545)
+++|+||+|+.+.++.. .+.......+.+..+.+.++.+.+||++ .++.
T Consensus 118 iilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~ 169 (307)
T 3r7w_A 118 IFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLY 169 (307)
T ss_dssp EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHH
T ss_pred EEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHH
Confidence 99999999998733221 1221222223344443345558899988 4444
No 131
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.45 E-value=1.3e-13 Score=131.31 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=88.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|+|||||+|++++..++ ....|++. ..... . ..+.+. .
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~~---~~~~~t~~-~~~~~-------------~----~~~~~~----~-------- 56 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKFP---TDYIPTVF-DNFSA-------------N----VAVDGQ----I-------- 56 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCSSC-CCEEE-------------E----EECSSC----E--------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC---ccCCCccc-eeEEE-------------E----EEECCE----E--------
Confidence 38999999999999999999987742 11122221 11100 0 000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhcC--CCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRGH--DDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~~--~~~ii 354 (545)
..+.|+||||...- ..+...++.++|++|+++|.++....+... .++..+... +.|++
T Consensus 57 --------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 117 (212)
T 2j0v_A 57 --------VNLGLWDTAGQEDY-----------SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV 117 (212)
T ss_dssp --------EEEEEECCCCCCCC-----------CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE
T ss_pred --------EEEEEEECCCcHHH-----------HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 26889999998431 112334578999999999998732223332 455555443 68999
Q ss_pred EEecCCCCCCHHHH---------HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQL---------MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l---------~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.... .+....+. +..+. ...+.+||++|.|+++
T Consensus 118 lv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~----~~~~~--~~~~~~Sa~~g~gi~~ 169 (212)
T 2j0v_A 118 LVGTKLDLRDDKGYLADHTNVITSTQGEELR----KQIGA--AAYIECSSKTQQNVKA 169 (212)
T ss_dssp EEEECHHHHTCHHHHHTCSSCCCHHHHHHHH----HHHTC--SEEEECCTTTCTTHHH
T ss_pred EEEeCHHhhhCccccccccCCCCHHHHHHHH----HHcCC--ceEEEccCCCCCCHHH
Confidence 99999998654321 11111121 11122 2337899999999875
No 132
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.45 E-value=4.3e-13 Score=126.29 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=87.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|++.+...+...++..+ +...... .. .+ +.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~-~~~~~~~--------------~~------~~----~~-------- 67 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLES-TNKIYKD--------------DI------SN----SS-------- 67 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCC-CCSCEEE--------------EE------CC----TT--------
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCCcceeeecc-ccceeee--------------ec------cC----CC--------
Confidence 4899999999999999999998653110000000 0000000 00 00 00
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHH---HHHhcCCCEEEEEeCCCCCCccHHH---HHHHHHH--hcC
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVT---SWFAAKCDLILLLFDPHKLDISDEF---KRVITSL--RGH 349 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia---~~~~~~aDliLlvlD~~~~~~~~~~---~~~l~~L--~~~ 349 (545)
-..+.|+||||...-.. .. ..++.++|++|+++|.++. ..+.+ ..++..+ ...
T Consensus 68 -------~~~l~i~Dt~G~~~~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~ 128 (196)
T 3llu_A 68 -------FVNFQIWDFPGQMDFFD-----------PTFDYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNP 128 (196)
T ss_dssp -------SCCEEEEECCSSCCTTC-----------TTCCHHHHHHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCT
T ss_pred -------eeEEEEEECCCCHHHHh-----------hhhhcccccccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCC
Confidence 02789999999743110 11 3557899999999999873 22333 3444444 234
Q ss_pred CCeEEEEecCCCCCCHHHHHH----HHHHHHHHhcccc-cCCccEEEEeeccCCCccCc
Q 009050 350 DDKIRVVLNKADQVDTQQLMR----VYGALMWSLGKVL-NTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 350 ~~~iiiVlNK~D~~~~~~l~~----v~~~l~~~l~k~~-~~~~v~~v~iSa~~~~~~~~ 403 (545)
+.|+++|.||+|+.+.+.... +.......+.+.. ....+..+.+||++ .|+++
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~ 186 (196)
T 3llu_A 129 DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFE 186 (196)
T ss_dssp TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHH
T ss_pred CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHH
Confidence 789999999999987533211 1111111122211 01233457899999 88775
No 133
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.44 E-value=2.8e-13 Score=146.44 Aligned_cols=146 Identities=18% Similarity=0.184 Sum_probs=92.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+ .. ..|+.. .... .+.+.+
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~--~~--~~~T~~-~~~~------------------~~~~~~-------------- 365 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQS--VT--TIPTVG-FNVE------------------TVTYKN-------------- 365 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC--CC--CCCCSS-EEEE------------------EEESSS--------------
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC--CC--cCCccc-eeEE------------------EEEeCC--------------
Confidence 3899999999999999999999875 22 222211 1110 000112
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.|+||||...-. .+...++.++|++|+|+|++......+...++..+.. .+.|+
T Consensus 366 --------~~~~l~Dt~G~~~~~-----------~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 426 (497)
T 3lvq_E 366 --------VKFNVWDVGGQDKIR-----------PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 426 (497)
T ss_dssp --------CEEEEEEECCCGGGS-----------GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEE
T ss_pred --------EEEEEEECCCcHHHH-----------HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcE
Confidence 278999999964311 1233457899999999999874434445555555533 47899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+.....++...+ +.. ........+.+||++|.|+++
T Consensus 427 ilv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~SA~~g~gi~~ 473 (497)
T 3lvq_E 427 LIFANKQDLPDAMKPHEIQEKL----GLTRIRDRNWYVQPSCATSGDGLYE 473 (497)
T ss_dssp EEEEECCSSSSCCCHHHHHHHT----TCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEECCCCCcCCCHHHHHHHh----chhhhhcCCeEEEEEECCCCCCHHH
Confidence 9999999997532222222221 221 122333458899999999885
No 134
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.44 E-value=2.6e-13 Score=144.18 Aligned_cols=169 Identities=20% Similarity=0.215 Sum_probs=95.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCC----------CCCcccceEEE----EeCCCccccCCceeEeec-CCCCC
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIG----------PEPTTDRFVVV----MSGVDDRSIPGNTVAVQA-DMPFS 262 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~----------~~p~t~r~~i~----~~~~~~~~~~g~t~~~~~-~~~~~ 262 (545)
..|+++|.+|+|||||+|+|++... .... ..+.|++..+- +.....+...|.|+.... .+...
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~--~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSK--MIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTT--CC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcC--CCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 4899999999999999999998763 2222 12222221110 000011112344431100 00000
Q ss_pred CcccccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHH
Q 009050 263 GLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRV 342 (545)
Q Consensus 263 gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~ 342 (545)
+ ..+.|+||||... |.......+..+|++|+++|+.. +...+..+.
T Consensus 103 ~----------------------~~~~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~-g~~~qt~~~ 148 (434)
T 1zun_B 103 K----------------------RKFIIADTPGHEQ-----------YTRNMATGASTCDLAIILVDARY-GVQTQTRRH 148 (434)
T ss_dssp S----------------------EEEEEEECCCSGG-----------GHHHHHHHHTTCSEEEEEEETTT-CSCHHHHHH
T ss_pred C----------------------ceEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHH
Confidence 0 2688999999732 22234455799999999999987 455666666
Q ss_pred HHHHhcCCC-eEEEEecCCCCCC--HHHHHHHHHHHHHHhccccc--CCccEEEEeeccCCCccCc
Q 009050 343 ITSLRGHDD-KIRVVLNKADQVD--TQQLMRVYGALMWSLGKVLN--TPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 343 l~~L~~~~~-~iiiVlNK~D~~~--~~~l~~v~~~l~~~l~k~~~--~~~v~~v~iSa~~~~~~~~ 403 (545)
+..+...+. ++++|+||+|+.+ .+.+..+...+.. +.+..+ ...++.+++||++|.|+.+
T Consensus 149 l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~-~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 149 SYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLK-FAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp HHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHH-HHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred HHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHH-HHHHhCCCccCceEEEEeccCCCCccc
Confidence 665555565 6999999999986 3333333222211 111222 3345568999999999987
No 135
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=8.4e-13 Score=126.45 Aligned_cols=151 Identities=18% Similarity=0.128 Sum_probs=86.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+++|... ..++..+++....... ++ .+.+. .
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~--~~~~~~~~~g~d~~~~-----------~i------~~~~~----~-------- 86 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHD--SMDSDCEVLGEDTYER-----------TL------MVDGE----S-------- 86 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCC--TTCCC---CCTTEEEE-----------EE------EETTE----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CCCCcCCccceeeEEE-----------EE------EECCe----e--------
Confidence 4899999999999999999998664 4444333332211100 00 00010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc----CCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----HDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----~~~~i 353 (545)
..+.++||+|... +.. .+...+...+|++|+++|.+.....+....++..+.. .+.|+
T Consensus 87 --------~~l~~~Dt~g~~~-~~~---------~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~pi 148 (211)
T 2g3y_A 87 --------ATIILLDMWENKG-ENE---------WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148 (211)
T ss_dssp --------EEEEEECCTTTTH-HHH---------HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCE
T ss_pred --------eEEEEeecCCCcc-hhh---------hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 1567899999732 111 1233446789999999999863223344455555543 36899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+.+...+....... + .+..+ ...+.+||++|.|+++
T Consensus 149 ilVgNK~DL~~~r~v~~~e~~~-~--a~~~~---~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 149 ILVGNKSDLVRCREVSVSEGRA-C--AVVFD---CKFIETSAAVQHNVKE 192 (211)
T ss_dssp EEEEECTTCGGGCCSCHHHHHH-H--HHHHT---CEEEECBTTTTBSHHH
T ss_pred EEEEEChHHhcCceEeHHHHHH-H--HHHcC---CEEEEEeCCCCCCHHH
Confidence 9999999986421111100000 0 11111 2337899999999885
No 136
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=132.30 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=79.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..++ ....|++...... . ..+.+- .
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~~---~~~~~t~~~~~~~------------~------~~~~~~----~-------- 81 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAFP---ESYTPTVFERYMV------------N------LQVKGK----P-------- 81 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEE------------E------EEETTE----E--------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC---CCCCCccceeEEE------------E------EEECCE----E--------
Confidence 38999999999999999999987742 1112222111100 0 000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~ii 354 (545)
..+.|+||||... |..+...++..+|++++++|+++....+... .++..+.. .+.|++
T Consensus 82 --------~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 142 (214)
T 2j1l_A 82 --------VHLHIWDTAGQDD-----------YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPII 142 (214)
T ss_dssp --------EEEEEEEC--------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEE
T ss_pred --------EEEEEEECCCchh-----------hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 2688999999632 1123445678999999999998632222222 35555543 367999
Q ss_pred EEecCCCCCCHHHHHHHHHH---------HHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~---------l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.......+.... ....+.+..+. ...+.+||++|.|+++
T Consensus 143 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~SA~~g~gi~e 198 (214)
T 2j1l_A 143 VVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA--VAYLECSARLHDNVHA 198 (214)
T ss_dssp EEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECBTTTTBSHHH
T ss_pred EEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCC--CEEEEecCCCCCCHHH
Confidence 99999999865433222100 00111222222 2348999999999875
No 137
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2e-13 Score=131.41 Aligned_cols=147 Identities=15% Similarity=0.223 Sum_probs=84.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccc-eEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDR-FVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r-~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+|+|++|||||||+|+|++..+ ... ..|+.+. +... .+.+.+ .
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~--~~~-~~~t~~~~~~~~------------------~~~~~~-----~------- 60 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEF--NMD-SKSTIGVEFATR------------------TLEIEG-----K------- 60 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCC--CC-------CCSEEEE------------------EEEETT-----E-------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC--CCC-CCCcccceeEEE------------------EEEECC-----E-------
Confidence 4899999999999999999999875 222 1222111 1110 000001 0
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc---CCCeE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG---HDDKI 353 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~---~~~~i 353 (545)
-..+.|+||||...- ..+...++..+|++|+++|.+.....+....++..+.. .+.|+
T Consensus 61 --------~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~pi 121 (223)
T 3cpj_B 61 --------RIKAQIWDTAGQERY-----------RAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAV 121 (223)
T ss_dssp --------EEEEEEECCTTTTTT-----------TCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEE
T ss_pred --------EEEEEEEECCCccch-----------hhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 026889999997431 01223457899999999999873333444455655543 36799
Q ss_pred EEEecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+..++. .....+. +.. .+..+.+||++|.|+++
T Consensus 122 ilv~nK~Dl~~~~~v~~~~~~~~~----~~~---~~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 122 GLIGNKSDLAHLRAVPTEESKTFA----QEN---QLLFTETSALNSENVDK 165 (223)
T ss_dssp EEEECCGGGGGGCCSCHHHHHHHH----HHT---TCEEEECCCC-CCCHHH
T ss_pred EEEEECcccccccccCHHHHHHHH----HHc---CCEEEEEeCCCCCCHHH
Confidence 9999999986421110 0011111 111 13347899999999875
No 138
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.43 E-value=1e-12 Score=138.20 Aligned_cols=171 Identities=13% Similarity=0.087 Sum_probs=99.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+++|.+|+|||||+|+|+|... ......+. .++. .........+.+.... ....+...
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~--~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------ 70 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWT--SKKLGYAE---TNIG-VCESCKKPEAYVTEPSCKSCGSDDE------------ 70 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCC--CSSSEEEE---EEEE-ECTTSCTTTTEESSSCCGGGTCCSC------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCccc--ccccCccc---ccee-eccccccccceeccccccccccccc------------
Confidence 4899999999999999999999764 22111111 1111 0010000111110000 00000000
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCC-CeEEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHD-DKIRV 355 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~-~~iii 355 (545)
......+.|+||||... |.......+..+|++|+++|+.......+..+++..+...+ .|+++
T Consensus 71 -----~~~~~~~~iiDtPGh~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iiv 134 (403)
T 3sjy_A 71 -----PKFLRRISFIDAPGHEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLII 134 (403)
T ss_dssp -----CEEEEEEEEEECCCCGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEE
T ss_pred -----ccccceEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEE
Confidence 00113789999999632 22244556789999999999987322566666666655444 48999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+.++..+.+..+...+... ....++.+++||++|.|+++
T Consensus 135 viNK~Dl~~~~~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g~gi~~ 181 (403)
T 3sjy_A 135 VQNKVDVVSKEEALSQYRQIKQFTKGT-WAENVPIIPVSALHKINIDS 181 (403)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSHHH
T ss_pred EEECccccchHHHHHHHHHHHHHHHhh-CCCCCEEEEEECCCCcChHH
Confidence 999999998766555554443222221 22344558999999998764
No 139
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.43 E-value=2.6e-13 Score=145.86 Aligned_cols=158 Identities=22% Similarity=0.229 Sum_probs=96.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+++|..|+|||||+|+|+|... ... ++ .......+|.|..... .+.+.+
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~--~~~-----~d-------~~~~e~~~GiTi~~~~~~~~~~~------------- 72 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIAS--TSA-----HD-------KLPESQKRGITIDIGFSAFKLEN------------- 72 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC----------------------------------CCCEEEETT-------------
T ss_pred CEEEEECCCCChHHHHHHHHHCCCc--ccc-----cc-------cccccccCccEEecceEEEEECC-------------
Confidence 4899999999999999999998762 100 00 0011123444432111 011111
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiV 356 (545)
..+.|+||||... |.......+..+|++|+++|+++ +...+..+.+..+...+.|+++|
T Consensus 73 ---------~~i~iiDtPGh~~-----------~~~~~~~~~~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~~ip~Ivv 131 (482)
T 1wb1_A 73 ---------YRITLVDAPGHAD-----------LIRAVVSAADIIDLALIVVDAKE-GPKTQTGEHMLILDHFNIPIIVV 131 (482)
T ss_dssp ---------EEEEECCCSSHHH-----------HHHHHHHHTTSCCEEEEEEETTT-CSCHHHHHHHHHHHHTTCCBCEE
T ss_pred ---------EEEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEecCC-CccHHHHHHHHHHHHcCCCEEEE
Confidence 2789999999721 22244556889999999999987 55667777777777778899999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 357 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+||+|+.+.+.+.++...+...+........++.+++||++|.|+++
T Consensus 132 iNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~ 178 (482)
T 1wb1_A 132 ITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDE 178 (482)
T ss_dssp EECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHH
T ss_pred EECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHH
Confidence 99999998655554444332222221012234458999999998764
No 140
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.42 E-value=4e-13 Score=128.60 Aligned_cols=115 Identities=22% Similarity=0.254 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+. ....|++. ..... . ..+.+. .
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~---~~~~~t~~-~~~~~-----------~------~~~~~~----~-------- 74 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYP---ETYVPTVF-ENYTA-----------C------LETEEQ----R-------- 74 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC---SSCCCCSE-EEEEE-----------E------EEC--C----E--------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCC---CCcCCeee-eeEEE-----------E------EEECCE----E--------
Confidence 38999999999999999999998752 11122221 11100 0 000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHH-HHHHHHHHhc--CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDE-FKRVITSLRG--HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~-~~~~l~~L~~--~~~~ii 354 (545)
..+.|+||||...- ..+...++..+|++|+++|.++...... ...++..+.. .+.|++
T Consensus 75 --------~~l~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii 135 (214)
T 3q3j_B 75 --------VELSLWDTSGSPYY-----------DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL 135 (214)
T ss_dssp --------EEEEEEEECCSGGG-----------TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEE
T ss_pred --------EEEEEEECCCCHhH-----------HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 26889999997321 1123345789999999999987433333 3456666544 368999
Q ss_pred EEecCCCCCC
Q 009050 355 VVLNKADQVD 364 (545)
Q Consensus 355 iVlNK~D~~~ 364 (545)
+|.||+|+.+
T Consensus 136 lv~nK~Dl~~ 145 (214)
T 3q3j_B 136 LIGCKTDLRT 145 (214)
T ss_dssp EEEECGGGGG
T ss_pred EEEEChhhcc
Confidence 9999999864
No 141
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.42 E-value=5.9e-13 Score=143.36 Aligned_cols=168 Identities=20% Similarity=0.294 Sum_probs=94.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCC----------CCccc--ceEEEEeCCCccccCCceeEeec-CCCCCCcc
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP----------EPTTD--RFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLT 265 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~----------~p~t~--r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~ 265 (545)
.|+++|.+|+|||||+|+|++... ..... ..... ....++........+|.|..... .+...+
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll~~~~--~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-- 110 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLLYDLN--IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR-- 110 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHHHHTT--SSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS--
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--CccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC--
Confidence 799999999999999999998742 11110 00000 11111222222334555542111 011111
Q ss_pred cccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCC------ccHHH
Q 009050 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD------ISDEF 339 (545)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~------~~~~~ 339 (545)
..+.|+||||... |...+...+..+|++|+++|++... .....
T Consensus 111 --------------------~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt 159 (483)
T 3p26_A 111 --------------------ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT 159 (483)
T ss_dssp --------------------CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHH
T ss_pred --------------------ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhH
Confidence 3789999999832 2334556689999999999998621 23455
Q ss_pred HHHHHHHhcCC-CeEEEEecCCCCCC--HHHHHHHHHHH---HHHhcccccCCccEEEEeeccCCCccCc
Q 009050 340 KRVITSLRGHD-DKIRVVLNKADQVD--TQQLMRVYGAL---MWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 340 ~~~l~~L~~~~-~~iiiVlNK~D~~~--~~~l~~v~~~l---~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
.+.+..+...+ .++++|+||+|+.+ .....++...+ ...++.. ...++.+++||++|.|+.+
T Consensus 160 ~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~--~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 160 KEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFF--EDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCC--GGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCC--cccceEEEEeeecCCCccc
Confidence 56655555555 46999999999986 33333332222 2222211 1234558999999999986
No 142
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.42 E-value=7.1e-14 Score=129.12 Aligned_cols=148 Identities=19% Similarity=0.182 Sum_probs=84.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|+|||||+|++++..++ ....|++ .... .....+.+ .
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~~---~~~~~t~-~~~~-----------------~~~~~~~~-----~-------- 54 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTFP---TDYVPTV-FDNF-----------------SANVVVNG-----A-------- 54 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC--------------C-----------------BCCCC-----------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCee-eeeE-----------------EEEEEECC-----E--------
Confidence 48999999999999999999987642 1111111 1000 00000001 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~ii 354 (545)
-..+.++||||...-. .+...++.++|++++++|+++....+... .++..+.. .+.|++
T Consensus 55 -------~~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 116 (182)
T 3bwd_D 55 -------TVNLGLWDTAGQEDYN-----------RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV 116 (182)
T ss_dssp ----------CEEECCCC-CTTT-----------TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE
T ss_pred -------EEEEEEEECCCChhhh-----------hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 0267899999974311 12234578999999999998632223333 35555543 368999
Q ss_pred EEecCCCCCCHHHH-----------HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQL-----------MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l-----------~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.... .+....+ .+..+. ...+.+||++|.|+++
T Consensus 117 lv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~--~~~~~~Sa~~~~gi~~ 170 (182)
T 3bwd_D 117 LVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL----KKLIGA--PAYIECSSKSQENVKG 170 (182)
T ss_dssp EEEECHHHHTCHHHHHHC--CCCCCHHHHHHH----HHHHTC--SEEEECCTTTCTTHHH
T ss_pred EEEechhhhcCcccccccccCCCCCHHHHHHH----HHHcCC--CEEEEEECCCCCCHHH
Confidence 99999998754332 0111111 111222 2337899999999875
No 143
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.42 E-value=4.8e-13 Score=138.65 Aligned_cols=204 Identities=16% Similarity=0.195 Sum_probs=106.1
Q ss_pred cccccccccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEee-cCCCCCCccc
Q 009050 188 LLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTT 266 (545)
Q Consensus 188 ~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~ 266 (545)
.+.++++... .|+|+|.+|||||||+|+|+|..+ .+.+....|.+.+.+................. ....+..+..
T Consensus 26 ~l~~i~~~lp-~I~vvG~~~sGKSSLln~l~g~~~--lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (360)
T 3t34_A 26 ALPTLWDSLP-AIAVVGGQSSGKSSVLESIVGKDF--LPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAA 102 (360)
T ss_dssp CC----CCCC-EEEEECBTTSSHHHHHHHHHTSCC--SCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHH
T ss_pred ccccccccCC-EEEEECCCCCcHHHHHHHHhCCCc--CCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHH
Confidence 5566655544 999999999999999999999886 45555445544444332221110000000000 0000000000
Q ss_pred cc--------------ccchhhhhhhcCchhhccCceeecCCCCCCh----hhhhhhhccChHHHHHHHhcCCCEEEEEe
Q 009050 267 FG--------------TAFLSKFECSQMPHSLLEHITLVDTPGVLSG----EKQRTQRAYDFTGVTSWFAAKCDLILLLF 328 (545)
Q Consensus 267 ~~--------------~~~~~~~~~~~~~~~lL~~v~liDTPG~~sg----ekq~v~~~~~~~~ia~~~~~~aDliLlvl 328 (545)
.. ..+-..........+-...+.||||||+... +.....+ ....+++.++.++|++|+++
T Consensus 103 v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~--~~~~~~~~~i~~~d~iilvv 180 (360)
T 3t34_A 103 VRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK--DIENMVRSYIEKPNCIILAI 180 (360)
T ss_dssp HHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH--HHHHHHHHHHHSSSEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH--HHHHHHHHHhhcCCeEEEEe
Confidence 00 0000000000001111247899999998762 0001111 11236788899999999999
Q ss_pred CCCCCCc-cHHHHHHHHHHhcCCCeEEEEecCCCCCCHHH-HHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 329 DPHKLDI-SDEFKRVITSLRGHDDKIRVVLNKADQVDTQQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 329 D~~~~~~-~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~-l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+...+. ..+...+++.+...+.++++|+||+|+++... ....... ...... ...+.+|+..+.++++
T Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~----~~~~~~---~~~~~v~~~s~~~i~~ 250 (360)
T 3t34_A 181 SPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEG----RSFKLK---YPWVGVVNRSQADINK 250 (360)
T ss_dssp EETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTT----SSSCCS---SCCEEECCCCHHHHHT
T ss_pred ecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcC----cccccc---CCeEEEEECChHHhcc
Confidence 8765332 34556777888777889999999999986432 1111110 111111 2236788888877664
No 144
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.42 E-value=1.7e-13 Score=127.68 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=86.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|++|||||||+|+|+|... ...+....|........ ...+.+. .+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~--~~~~~~~~t~g~~~~~~----------------~~~~~~~--~~~-------- 54 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKK--SDLGMQSATVGIDVKDW----------------PIQIRDK--RKR-------- 54 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------CSEEEEEE----------------EC------------------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--ccCCCcceeccEEeEEe----------------eeccccC--CCC--------
Confidence 3699999999999999999998642 22222111211111000 0000000 000
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCC-ccHHHHHHHHHHhc--CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD-ISDEFKRVITSLRG--HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~-~~~~~~~~l~~L~~--~~~~ii 354 (545)
-..+.++||||.. +.+ .+...++..+|++++++|.+... ..+....++..+.. .+.|++
T Consensus 55 -------~~~~~i~Dt~G~~---~~~--------~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~pii 116 (184)
T 2zej_A 55 -------DLVLNVWDFAGRE---EFY--------STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVI 116 (184)
T ss_dssp --------CEEEEEEECSHH---HHH--------TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEE
T ss_pred -------ceEEEEEecCCCH---HHH--------HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEE
Confidence 0267899999962 111 12234567899999999987621 12334455655543 368999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCcc-EEEEeeccCCC-ccC
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEV-VRVYIGSFNDK-PVN 402 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v-~~v~iSa~~~~-~~~ 402 (545)
+|.||+|+.+...+..........+.+..+.+.. ..+.+||+++. +++
T Consensus 117 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~ 166 (184)
T 2zej_A 117 LVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALA 166 (184)
T ss_dssp EEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHH
T ss_pred EEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHH
Confidence 9999999987654433222222233333333321 23789999985 544
No 145
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.42 E-value=1.3e-12 Score=125.57 Aligned_cols=143 Identities=22% Similarity=0.286 Sum_probs=89.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|.+|||||||++++++..++. ...|+....... ... ...+. .
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~~---~~~~Tig~d~~~-------------k~~----~~~~~----~--------- 61 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFDN---TYQATIGIDFLS-------------KTM----YLEDR----T--------- 61 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-------------CEE-------------EEE----ECSSC----E---------
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCCC---CcCCccceEEEE-------------EEE----Eecce----E---------
Confidence 79999999999999999999877521 122221110000 000 00010 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeEEE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKIRV 355 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~iii 355 (545)
-.+.||||+|.-. |..+...+...+|++++++|.+.....+....++..+. ..+.|+++
T Consensus 62 -------v~l~iwDtaGqe~-----------~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piil 123 (216)
T 4dkx_A 62 -------IRLQLWDTAGLER-----------FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 123 (216)
T ss_dssp -------EEEEEECCSCTTT-----------CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEE
T ss_pred -------EEEEEEECCCchh-----------hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 1678999999732 22356677899999999999987444445556665553 35679999
Q ss_pred EecCCCCCCH-----HHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDT-----QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~-----~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|.||+|+.+. ++..+.. +..+ ...+.+||++|.|+++
T Consensus 124 VgNK~Dl~~~r~V~~~e~~~~a--------~~~~---~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 124 VGNKTDLADKRQVSIEEGERKA--------KELN---VMFIETSAKAGYNVKQ 165 (216)
T ss_dssp EEECTTCGGGCCSCHHHHHHHH--------HHHT---CEEEEEBTTTTBSHHH
T ss_pred EeeccchHhcCcccHHHHhhHH--------HHhC---CeeEEEeCCCCcCHHH
Confidence 9999998643 2222221 1112 2337899999999886
No 146
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.42 E-value=9.2e-13 Score=124.98 Aligned_cols=165 Identities=19% Similarity=0.209 Sum_probs=91.0
Q ss_pred CcccccccccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCccc
Q 009050 187 PLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTT 266 (545)
Q Consensus 187 ~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~ 266 (545)
..+.+..+..+..|+|+|++|||||||+|+|+|.... ..+++.+.++...- ...
T Consensus 16 ~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~-~~~~~~~G~~~~~~-------------------------~~~ 69 (210)
T 1pui_A 16 PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSL-ARTSKTPGRTQLIN-------------------------LFE 69 (210)
T ss_dssp SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEE-------------------------EEE
T ss_pred CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCcc-ccccCCCccceeeE-------------------------EEE
Confidence 3566655555669999999999999999999997721 33333333322110 000
Q ss_pred ccccchhhhhhhcCchhhccCceeecCCCCCChh-----hhhhhhccChHHHHHHH---hcCCCEEEEEeCCCCCCccHH
Q 009050 267 FGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGE-----KQRTQRAYDFTGVTSWF---AAKCDLILLLFDPHKLDISDE 338 (545)
Q Consensus 267 ~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sge-----kq~v~~~~~~~~ia~~~---~~~aDliLlvlD~~~~~~~~~ 338 (545)
.+ ..+.++||||..... ..... .....+ ...++.+++++|... .....
T Consensus 70 ~~-----------------~~~~l~Dt~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~ 125 (210)
T 1pui_A 70 VA-----------------DGKRLVDLPGYGYAEVPEEMKRKWQ------RALGEYLEKRQSLQGLVVLMDIRH-PLKDL 125 (210)
T ss_dssp EE-----------------TTEEEEECCCCC------CCHHHHH------HHHHHHHHHCTTEEEEEEEEETTS-CCCHH
T ss_pred ec-----------------CCEEEEECcCCcccccCHHHHHHHH------HHHHHHHHhhhcccEEEEEEECCC-CCchh
Confidence 00 156799999985310 01111 111122 257889999999876 33443
Q ss_pred HHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 339 FKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 339 ~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
..++...+...+.|+++|.||+|+.+..+..+....+...+.+. . ..+..+++||+.+.++++
T Consensus 126 ~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Sal~~~~~~~ 188 (210)
T 1pui_A 126 DQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAF-N-GDVQVETFSSLKKQGVDK 188 (210)
T ss_dssp HHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG-C-SCEEEEECBTTTTBSHHH
T ss_pred HHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc-C-CCCceEEEeecCCCCHHH
Confidence 34455555666789999999999987543222111111111111 1 123457899999988764
No 147
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.41 E-value=3.5e-13 Score=132.23 Aligned_cols=122 Identities=17% Similarity=0.222 Sum_probs=75.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCC-cccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP-TTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p-~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+|+|.+|||||||+|+|+|... ..++..+ .+|+...... ..+.+
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~--~~~~~~~~~~T~~~~~~~-----------------~~~~~------------- 69 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRR--FFSRLGATSVTRACTTGS-----------------RRWDK------------- 69 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCC--C---------CCSCEEEE-----------------EEETT-------------
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC--ccccCCCCCccccEEEEE-----------------EEECC-------------
Confidence 3899999999999999999999986 4433322 1222221100 00011
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHH---hcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC----
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWF---AAKCDLILLLFDPHKLDISDEFKRVITSLRGH---- 349 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~---~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~---- 349 (545)
..+.|+||||+.+.....-.+. +..+.+++ ...+|++|+|+|+.. +......+++.+.+.
T Consensus 70 ---------~~i~liDTPG~~~~~~~~~~~~--~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~ 136 (247)
T 3lxw_A 70 ---------CHVEVVDTPDIFSSQVSKTDPG--CEERGHCYLLSAPGPHALLLVTQLGR--FTAQDQQAVRQVRDMFGED 136 (247)
T ss_dssp ---------EEEEEEECCSCSSTTHHHHSTT--SHHHHHHHHHHTTCCSEEEEEEETTB--CCHHHHHHHHHHHHHHCGG
T ss_pred ---------cEEEEEECCCCCCCCCCcHHHH--HHHHHHHHHhcCCCCCEEEEEEeCCC--CCHHHHHHHHHHHHHhChh
Confidence 2789999999976322110111 11133332 489999999999985 456656666555442
Q ss_pred --CCeEEEEecCCCCCC
Q 009050 350 --DDKIRVVLNKADQVD 364 (545)
Q Consensus 350 --~~~iiiVlNK~D~~~ 364 (545)
+.|+++++||+|+.+
T Consensus 137 ~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 137 VLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp GGGGEEEEEECGGGGTT
T ss_pred hhccEEEEEEchHhcCC
Confidence 679999999999865
No 148
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.41 E-value=6.5e-13 Score=124.15 Aligned_cols=141 Identities=13% Similarity=0.148 Sum_probs=85.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|.+|||||||+|+|++..+. ....| |....... .. .+.+- .
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~---~~~~~-t~~~~~~~-----------~~------~~~~~----~--------- 68 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFI---SEYDP-NLEDTYSS-----------EE------TVDHQ----P--------- 68 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCC---SCCCT-TCCEEEEE-----------EE------EETTE----E---------
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC---cccCC-CccceeeE-----------EE------EECCE----E---------
Confidence 8999999999999999999987752 11122 22211100 00 00000 0
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc------CCCe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG------HDDK 352 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~------~~~~ 352 (545)
..+.|+||||.... + .+ ..++..+|++++++|.++....+....++..+.. .+.|
T Consensus 69 -------~~l~i~Dt~G~~~~---~--------~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p 129 (187)
T 3c5c_A 69 -------VHLRVMDTADLDTP---R--------NC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP 129 (187)
T ss_dssp -------EEEEEEECCC---C---C--------CT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred -------EEEEEEECCCCCcc---h--------hH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 26789999997321 0 01 2457899999999999863333444455555543 4789
Q ss_pred EEEEecCCCCCCH-----HHHHHHHHHHHHHhcccccCCccEEEEeec-cCCCccCc
Q 009050 353 IRVVLNKADQVDT-----QQLMRVYGALMWSLGKVLNTPEVVRVYIGS-FNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~-----~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa-~~~~~~~~ 403 (545)
+++|.||+|+.+. ++..+.... .+ +..+.+|| ++|.|+++
T Consensus 130 iilv~nK~Dl~~~~~v~~~~~~~~~~~--------~~---~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 130 ALLLGNKLDMAQYRQVTKAEGVALAGR--------FG---CLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEEECGGGGGGCSSCHHHHHHHHHH--------HT---CEEEECCSSSCSHHHHH
T ss_pred EEEEEECcchhhcCccCHHHHHHHHHH--------cC---CcEEEEeecCccccHHH
Confidence 9999999998642 222222211 11 23478999 89988775
No 149
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.41 E-value=1.7e-13 Score=133.55 Aligned_cols=126 Identities=14% Similarity=0.236 Sum_probs=70.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCC--cccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEP--TTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p--~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
..|+|+|++|||||||+|+|+|... ..+..+ +++....... ..+.+
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~---~~~~~~~~~~t~~~~~~~-----------------~~~~~------------ 77 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKV---FHSGTAAKSITKKCEKRS-----------------SSWKE------------ 77 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCC---SCC-------CCSCEEEE-----------------EEETT------------
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCc---CccCCCCCceeeeEEEEE-----------------EEeCC------------
Confidence 4899999999999999999999885 233322 2222211100 00011
Q ss_pred hhhcCchhhccCceeecCCCCCChhh--hhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc-----
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEK--QRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG----- 348 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgek--q~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~----- 348 (545)
..+.||||||+.++.. +...+ .+..........+|++|+++|+... ......++..+..
T Consensus 78 ----------~~i~liDTpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~v~d~~~~--~~~~~~~l~~~~~~~~~~ 143 (239)
T 3lxx_A 78 ----------TELVVVDTPGIFDTEVPNAETSK--EIIRCILLTSPGPHALLLVVPLGRY--TEEEHKATEKILKMFGER 143 (239)
T ss_dssp ----------EEEEEEECCSCC-----CHHHHH--HHHHHHHHTTTCCSEEEEEEETTCC--SSHHHHHHHHHHHHHHHH
T ss_pred ----------ceEEEEECCCccCCCCCHHHHHH--HHHHHHHhcCCCCcEEEEEeeCCCC--CHHHHHHHHHHHHHhhhh
Confidence 2688999999986321 11111 0111223345788999999998753 3344445544421
Q ss_pred CCCeEEEEecCCCCCCHHHHH
Q 009050 349 HDDKIRVVLNKADQVDTQQLM 369 (545)
Q Consensus 349 ~~~~iiiVlNK~D~~~~~~l~ 369 (545)
...|+++|+||+|+....++.
T Consensus 144 ~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 144 ARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HGGGEEEEEECGGGC------
T ss_pred ccceEEEEEeCCccCCcccHH
Confidence 235899999999998654443
No 150
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.41 E-value=2.8e-13 Score=140.40 Aligned_cols=155 Identities=21% Similarity=0.263 Sum_probs=86.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|+|++|||||||+|+|+|.. ..+++.+.+|+.... . ...+.|
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~---~~~~~~~~~T~d~~~-------------~----~i~~~g--------------- 225 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT---QKVDTKLFTTMSPKR-------------Y----AIPINN--------------- 225 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--------------CCSCE-------------E----EEEETT---------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ccccCCcccccCCEE-------------E----EEEECC---------------
Confidence 69999999999999999999987 455555554432211 0 000111
Q ss_pred cCchhhccCceeecCCCCCCh-hhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCC--ccHH---HHHHHHHHhcCCCe
Q 009050 279 QMPHSLLEHITLVDTPGVLSG-EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD--ISDE---FKRVITSLRGHDDK 352 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sg-ekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~--~~~~---~~~~l~~L~~~~~~ 352 (545)
..+.++||||+... ....+.. |. -+...+..+|++++++|+++.. .... ..+++..+...+.|
T Consensus 226 -------~~v~l~DT~G~i~~lp~~lve~---f~-~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p 294 (364)
T 2qtf_A 226 -------RKIMLVDTVGFIRGIPPQIVDA---FF-VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP 294 (364)
T ss_dssp -------EEEEEEECCCBCSSCCGGGHHH---HH-HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC
T ss_pred -------EEEEEEeCCCchhcCCHHHHHH---HH-HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC
Confidence 15789999998542 1111221 11 1234578999999999998632 1111 13445555445789
Q ss_pred EEEEecCCCCCCHH--HHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQ--QLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~--~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|.||+|+.+.. ........+...+. ...+..+++||+++.|+++
T Consensus 295 ~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~SA~~g~gi~~ 343 (364)
T 2qtf_A 295 ILVTLNKIDKINGDLYKKLDLVEKLSKELY----SPIFDVIPISALKRTNLEL 343 (364)
T ss_dssp EEEEEECGGGCCSCHHHHHHHHHHHHHHHC----SCEEEEEECBTTTTBSHHH
T ss_pred EEEEEECCCCCCchHHHHHHHHHHHHHHhc----CCCCcEEEEECCCCcCHHH
Confidence 99999999998632 11111111111110 1122338999999999875
No 151
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.41 E-value=1.3e-13 Score=145.19 Aligned_cols=152 Identities=17% Similarity=0.230 Sum_probs=93.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+|+|..|+|||||+|+|++..+ ..++..+.||...... ...+.+.
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~--~~~~~~~gtT~d~~~~-----------------~~~~~~~------------ 82 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNV--SIVSDYAGTTTDPVYK-----------------SMELHPI------------ 82 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC---------------CCCCEE-----------------EEEETTT------------
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCC--CccCCCCCeeeeeEEE-----------------EEEECCC------------
Confidence 34899999999999999999999886 5566655543322110 0000010
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiV 356 (545)
..+.||||||...... +. .+. ..-+..++.++|++|+++|+. .......++..+.+.+.|+++|
T Consensus 83 ---------~~l~liDTpG~~d~~~--l~-~~~-~~~~~~~l~~aD~vllVvD~~---~~~~~~~~l~~l~~~~~piIvV 146 (423)
T 3qq5_A 83 ---------GPVTLVDTPGLDDVGE--LG-RLR-VEKARRVFYRADCGILVTDSA---PTPYEDDVVNLFKEMEIPFVVV 146 (423)
T ss_dssp ---------EEEEEEECSSTTCCCT--TC-CCC-HHHHHHHHTSCSEEEEECSSS---CCHHHHHHHHHHHHTTCCEEEE
T ss_pred ---------CeEEEEECcCCCcccc--hh-HHH-HHHHHHHHhcCCEEEEEEeCC---ChHHHHHHHHHHHhcCCCEEEE
Confidence 2688999999965110 00 000 112456688999999999993 4677788889888889999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 357 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+||+|+.+.... +.... +.+..+. ..+++||++|.|+++
T Consensus 147 ~NK~Dl~~~~~~-~~~~~----l~~~~g~---~v~~vSAktg~gI~e 185 (423)
T 3qq5_A 147 VNKIDVLGEKAE-ELKGL----YESRYEA---KVLLVSALQKKGFDD 185 (423)
T ss_dssp CCCCTTTTCCCT-HHHHH----SSCCTTC---CCCCCSSCCTTSTTT
T ss_pred EeCcCCCCccHH-HHHHH----HHHHcCC---CEEEEECCCCCCHHH
Confidence 999999864322 11111 2333332 237899999999887
No 152
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.40 E-value=2.5e-13 Score=129.76 Aligned_cols=116 Identities=18% Similarity=0.273 Sum_probs=71.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
.+.|+|+|++|+|||||+|+|++..+....++..|+++. .+.+
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~------------------------~~~~------------- 54 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA------------------------DYDG------------- 54 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET------------------------TGGG-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE------------------------EeeC-------------
Confidence 458999999999999999999998752111111111100 0001
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCC-CCCccHHHHHHHHHHh-------c
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPH-KLDISDEFKRVITSLR-------G 348 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~-~~~~~~~~~~~l~~L~-------~ 348 (545)
..+.++||||...-... .. ...+..+..+|++|+++|++ ..........++..+. .
T Consensus 55 ---------~~~~l~Dt~G~~~~~~~-~~------~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (218)
T 1nrj_B 55 ---------SGVTLVDFPGHVKLRYK-LS------DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE 118 (218)
T ss_dssp ---------SSCEEEECCCCGGGTHH-HH------HHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHST
T ss_pred ---------ceEEEEECCCcHHHHHH-HH------HHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhccccccc
Confidence 37899999998431111 00 01122234489999999998 4333344444444432 2
Q ss_pred CCCeEEEEecCCCCCCH
Q 009050 349 HDDKIRVVLNKADQVDT 365 (545)
Q Consensus 349 ~~~~iiiVlNK~D~~~~ 365 (545)
.+.|+++|+||+|+.+.
T Consensus 119 ~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 119 NGIDILIACNKSELFTA 135 (218)
T ss_dssp TCCCEEEEEECTTSTTC
T ss_pred CCCCEEEEEEchHhccc
Confidence 47899999999999864
No 153
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.40 E-value=4.9e-13 Score=125.98 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=84.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|+|++..++ ...+.|+....... ..+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~~~----~~~~~t~~~~~~~~-----------------~~~~~~------------- 66 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNGYP----TEYIPTAFDNFSAV-----------------VSVDGR------------- 66 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEE-----------------EEETTE-------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCcccceeEEE-----------------EEECCE-------------
Confidence 48999999999999999999987641 12222222221100 000010
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhc--CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRG--HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~--~~~~ii 354 (545)
-..+.++||||...-. .+...++.++|++++++|+++........ .++..+.. .+.|++
T Consensus 67 -------~~~~~i~Dt~G~~~~~-----------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i 128 (201)
T 2q3h_A 67 -------PVRLQLCDTAGQDEFD-----------KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII 128 (201)
T ss_dssp -------EEEEEEEECCCSTTCS-----------SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEE
T ss_pred -------EEEEEEEECCCCHHHH-----------HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 0157799999984310 01234578999999999998733223332 45555543 368999
Q ss_pred EEecCCCCCCHHHHHHHH---------HHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVY---------GALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~---------~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.......+ ......+.+..+. ...+.+||++|.|+++
T Consensus 129 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~ 184 (201)
T 2q3h_A 129 LVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA--ASYIECSALTQKNLKE 184 (201)
T ss_dssp EEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC--SEEEECCTTTCTTHHH
T ss_pred EEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC--cEEEEEecCCCCCHHH
Confidence 999999987532110000 0000011111122 1337899999999875
No 154
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.40 E-value=3.4e-13 Score=126.15 Aligned_cols=127 Identities=18% Similarity=0.268 Sum_probs=74.9
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
.+.|+++|++|||||||+|+|++..++...++..|+++ . .+.+
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~------------------~------~~~~------------- 90 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA------------------A------DYDG------------- 90 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC------------------------------------CCCC-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee------------------e------eecC-------------
Confidence 45899999999999999999999875211112111111 0 0011
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCC-CCCccHHHHHHHHHHh-------c
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPH-KLDISDEFKRVITSLR-------G 348 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~-~~~~~~~~~~~l~~L~-------~ 348 (545)
..+.++||||........ ....+..+..+|++|+++|++ ..........++..+. .
T Consensus 91 ---------~~~~l~Dt~G~~~~~~~~-------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (193)
T 2ged_A 91 ---------SGVTLVDFPGHVKLRYKL-------SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE 154 (193)
T ss_dssp ---------TTCSEEEETTCCBSSCCH-------HHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ---------CeEEEEECCCCchHHHHH-------HHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccc
Confidence 278899999986421111 112233456699999999998 4221222333333331 2
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHH
Q 009050 349 HDDKIRVVLNKADQVDTQQLMRVYGALM 376 (545)
Q Consensus 349 ~~~~iiiVlNK~D~~~~~~l~~v~~~l~ 376 (545)
.+.|+++|+||+|+.+...+.++...+.
T Consensus 155 ~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 155 NGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp TCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred cCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 4789999999999986544444444443
No 155
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=1.3e-13 Score=144.39 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceE
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFV 237 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~ 237 (545)
.|+|+|.||||||||+|+|+|.. ..+++.|.||+..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~---~~~~~~p~tT~~~ 37 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD---VEIANYPFTTIEA 37 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------C
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---CcccCCCCcccCC
Confidence 58999999999999999999987 6778888777643
No 156
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.40 E-value=4.2e-13 Score=148.01 Aligned_cols=169 Identities=20% Similarity=0.266 Sum_probs=96.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCC----------CCcccce--EEEEeCCCccccCCceeEeec-CCCCCCc
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP----------EPTTDRF--VVVMSGVDDRSIPGNTVAVQA-DMPFSGL 264 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~----------~p~t~r~--~i~~~~~~~~~~~g~t~~~~~-~~~~~gl 264 (545)
..|+++|.+|+|||||+|+|++... .+... ......+ ..++........+|+|+.... .+...+
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~~~--~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~- 244 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYDLN--IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 244 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSCSS--CSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS-
T ss_pred eEEEEEECCCCCHHHHHHHHHHhcC--CccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC-
Confidence 3899999999999999999998753 22211 0000000 000000001113455542111 011111
Q ss_pred ccccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCC------ccHH
Q 009050 265 TTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD------ISDE 338 (545)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~------~~~~ 338 (545)
.++.|+||||... |...+...+..+|++|+++|++... ...+
T Consensus 245 ---------------------~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~q 292 (611)
T 3izq_1 245 ---------------------ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQ 292 (611)
T ss_dssp ---------------------CEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSH
T ss_pred ---------------------ceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhH
Confidence 3789999999843 2223334578999999999997510 1234
Q ss_pred HHHHHHHHhcCCC-eEEEEecCCCCCC--HHHHHHHHHH---HHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 339 FKRVITSLRGHDD-KIRVVLNKADQVD--TQQLMRVYGA---LMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 339 ~~~~l~~L~~~~~-~iiiVlNK~D~~~--~~~l~~v~~~---l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
..+.+..+...+. ++++|+||+|+.+ .....++... +...++.. ...++.+++||++|.|+.+
T Consensus 293 t~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~--~~~~~~i~vSA~tG~gI~e 361 (611)
T 3izq_1 293 TKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFF--EDNINWVPISGFSGEGVYK 361 (611)
T ss_dssp HHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCC--GGGCEEEECCTTTCTTTSS
T ss_pred HHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhccc--ccCccEEeeecccCCCccc
Confidence 5555665666664 5999999999986 2222222222 22222221 1234558999999999987
No 157
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.10 E-value=2.7e-14 Score=135.24 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=88.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|||||||+|+|++..++ .....|+..... ....+.+ .
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~-----------------~~~~~~~-----~-------- 76 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYS-----------------ANVMVDG-----K-------- 76 (204)
Confidence 38999999999999999999976641 111111111100 0000001 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhcC--CCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRGH--DDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~~--~~~ii 354 (545)
-..+.++||||... |..+...++.++|++++++|+++........ .++..+... +.|++
T Consensus 77 -------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~pii 138 (204)
T 3th5_A 77 -------PVNLGLWDTAGQED-----------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII 138 (204)
Confidence 02577999999732 1123445678999999999987633233333 455555544 68999
Q ss_pred EEecCCCCCCHHHHHHHHH---------HHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYG---------ALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~---------~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.....+... .....+.+..+.. ..+.+||++|.|+++
T Consensus 139 lv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~vSA~~g~gi~~ 194 (204)
T 3th5_A 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV--KYLECSALTQRGLKT 194 (204)
Confidence 9999999975432111100 0000111111111 337899999999886
No 158
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.39 E-value=6.6e-13 Score=123.48 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=71.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|++|||||||+|+|++..++ ....|+....... . ..+.+- .
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~---~~~~~t~~~~~~~--------------~----~~~~~~----~-------- 54 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFP---ENYVPTVFENYTA--------------S----FEIDTQ----R-------- 54 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCCSEEEEEE--------------E----EECSSC----E--------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEE--------------E----EEECCE----E--------
Confidence 37999999999999999999997752 1122222111100 0 000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHH-HHHHHHHhc--CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRG--HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~-~~~l~~L~~--~~~~ii 354 (545)
..+.++||||...- ..+...++..+|++|+++|.++....+.. ..++..+.. .+.|++
T Consensus 55 --------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii 115 (184)
T 1m7b_A 55 --------IELSLWDTSGSPYY-----------DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML 115 (184)
T ss_dssp --------EEEEEEEECCSGGG-----------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEE
T ss_pred --------EEEEEEECCCChhh-----------hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE
Confidence 26889999997321 01223457899999999999863222233 344454443 368999
Q ss_pred EEecCCCCCC
Q 009050 355 VVLNKADQVD 364 (545)
Q Consensus 355 iVlNK~D~~~ 364 (545)
+|.||+|+.+
T Consensus 116 lv~nK~Dl~~ 125 (184)
T 1m7b_A 116 LVGCKSDLRT 125 (184)
T ss_dssp EEEECGGGGG
T ss_pred EEEEcchhhc
Confidence 9999999974
No 159
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.39 E-value=5.4e-14 Score=144.71 Aligned_cols=167 Identities=21% Similarity=0.262 Sum_probs=106.7
Q ss_pred eeEEeCC--cccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc---------cceEEEE
Q 009050 177 VTYRFND--FVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT---------DRFVVVM 240 (545)
Q Consensus 177 ~~~~~~~--~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t---------~r~~i~~ 240 (545)
+++.|+. ....++++++|+..+ +++|+|+||||||||+++|+|...| |.+ +.+++-+ .+..+.+
T Consensus 30 ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~ 109 (366)
T 3tui_C 30 ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGM 109 (366)
T ss_dssp EEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEE
T ss_pred EEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEE
Confidence 4445643 113489999999877 9999999999999999999999865 111 1111110 1234566
Q ss_pred eCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHH
Q 009050 241 SGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 241 ~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~ 315 (545)
.+|+....+..|+..+..++. ...+ ..+.+......++|+.+.+.+ .|+.+| |++||+. +|+
T Consensus 110 v~Q~~~l~~~~TV~env~~~~---~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVa-------IAr 176 (366)
T 3tui_C 110 IFQHFNLLSSRTVFGNVALPL---ELDN---TPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVA-------IAR 176 (366)
T ss_dssp ECSSCCCCTTSCHHHHHHHHH---HHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHH-------HHH
T ss_pred EeCCCccCCCCCHHHHHHHHH---HhcC---CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHH
Confidence 666555544444321111100 0000 011122334556677776654 688888 7999999 999
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
+++.+|+++|+ .+|+.. ..++.++++.+.+ .+..+++|.|.
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~---~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPAT---TRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHH---HHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred HHhcCCCEEEEECCCccCCHHH---HHHHHHHHHHHHHhCCCEEEEEecC
Confidence 99999999998 555542 5677788888854 58899999984
No 160
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=5.2e-14 Score=148.05 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=97.0
Q ss_pred EEeCCcccCcccccccccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCC-C-----CcccceEEEEeCCCccccCCce
Q 009050 179 YRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGP-E-----PTTDRFVVVMSGVDDRSIPGNT 252 (545)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~-~-----p~t~r~~i~~~~~~~~~~~g~t 252 (545)
+.|+. ..++++++|. |+|+|++|||||||+|.|+|...+ ..+. . +.|.....+ +
T Consensus 19 ~~y~~--~~vl~~vsf~----I~lvG~sGaGKSTLln~L~g~~~~--~~~~~~~~~~~~~t~~~~~i------------~ 78 (418)
T 2qag_C 19 NQVYR--KSVKRGFEFT----LMVVGESGLGKSTLINSLFLTDLY--SPEYPGPSHRIKKTVQVEQS------------K 78 (418)
T ss_dssp CCTTT--TTCC-CCCEE----EEEECCTTSSHHHHHHHHTTCCCC--CCCCCSCC-----CCEEEEE------------E
T ss_pred eeECC--EEEecCCCEE----EEEECCCCCcHHHHHHHHhCCCCC--CCCCCCcccCCccceeeeeE------------E
Confidence 34554 3477777775 699999999999999999998862 1110 0 001100000 0
Q ss_pred eEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCChhh-----hhh--------hhcc-ChHHHHHHHh
Q 009050 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEK-----QRT--------QRAY-DFTGVTSWFA 318 (545)
Q Consensus 253 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgek-----q~v--------~~~~-~~~~ia~~~~ 318 (545)
.. ....++ ...++++||||+..... +.+ ...+ ....++++++
T Consensus 79 ~v----~q~~~~--------------------~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~ 134 (418)
T 2qag_C 79 VL----IKEGGV--------------------QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQM 134 (418)
T ss_dssp CC------------------------------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCC
T ss_pred EE----EecCCc--------------------ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 000010 12678999999854200 000 0000 0001234445
Q ss_pred cCCC--EEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeecc
Q 009050 319 AKCD--LILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSF 396 (545)
Q Consensus 319 ~~aD--liLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~ 396 (545)
.+++ ++|++++++..++......+++.+.. +.++++|+||+|+.+..++......+...+... .+..+.+|+.
T Consensus 135 ~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~----~i~~~~~sa~ 209 (418)
T 2qag_C 135 PDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH----KIKIYEFPET 209 (418)
T ss_dssp CCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHH----TCCCCCCC--
T ss_pred cCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHHHHHHHHHHHHc----CCeEEeCCCC
Confidence 5554 57777777522455666678888875 789999999999998766654333332111111 1222567877
Q ss_pred CCCccCcccCCCccHHhhHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhchh
Q 009050 397 NDKPVNESAFGPLGKELFEKEQDDLLSDLKDIPKKACDRRINEFVKRARAAK----IHAYIISHLRKEMPA 463 (545)
Q Consensus 397 ~~~~~~~~~~~~~~~~~f~~e~e~ll~~l~~~~~~~~~~~i~~~~~~~~~~~----i~a~i~~~~~~~~~~ 463 (545)
.+.++.. ++..+.+.+|+++....+.+...++.++ ..+.+.++..+|+-.
T Consensus 210 ~~~~v~~-----------------~~~~l~~~iPfavv~s~~~~~~~g~~vr~R~y~wg~i~Ven~~h~df 263 (418)
T 2qag_C 210 DDEEENK-----------------LVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDF 263 (418)
T ss_dssp --------------------------------CCEEECC-------------CEECSSCEECC--CCSSTT
T ss_pred CCcCHHH-----------------HHHHHHhhCCcceeecceeEecCCceeecccccceEEEecchhhCCH
Confidence 7655442 3345566667666544444443333333 445556667777643
No 161
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.38 E-value=9.9e-14 Score=143.62 Aligned_cols=166 Identities=20% Similarity=0.244 Sum_probs=108.5
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--------CCCCCCCCcccceEEEEeCCCc
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--------GAHIGPEPTTDRFVVVMSGVDD 245 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--------~~~v~~~p~t~r~~i~~~~~~~ 245 (545)
.+++.|+.. .++++++|+..+ +++|+||||||||||+|.|+|...| |..+...+. .+..+.+.+|+.
T Consensus 8 ~l~~~yg~~--~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~-~~r~ig~VfQ~~ 84 (381)
T 3rlf_A 8 NVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP-AERGVGMVFQSY 84 (381)
T ss_dssp EEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-GGSCEEEECTTC
T ss_pred eEEEEECCE--EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH-HHCCEEEEecCC
Confidence 345577764 489999999876 9999999999999999999999865 111111111 123466666666
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
...|..|+..+..+. +...+ ..+.+......++++.+.+.+ .|+.+| |++||++ +|++++.+
T Consensus 85 ~l~p~ltV~eni~~~---~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVa-------iArAL~~~ 151 (381)
T 3rlf_A 85 ALYPHLSVAENMSFG---LKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVA-------IGRTLVAE 151 (381)
T ss_dssp CCCTTSCHHHHHTHH---HHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHH-------HHHHHHHC
T ss_pred cCCCCCCHHHHHHHH---HHHcC---CCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHH-------HHHHHHcC
Confidence 666655542221111 00000 111122334555666666644 677888 8999999 99999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecCC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNKA 360 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK~ 360 (545)
|+++|+ .+|+. ...++.+.++.+.+ .+.++++|.|..
T Consensus 152 P~lLLLDEPts~LD~~---~~~~l~~~l~~l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 152 PSVFLLDEPLSNLDAA---LRVQMRIEISRLHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp CSEEEEESTTTTSCHH---HHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred CCEEEEECCCcCCCHH---HHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 999988 45543 24566777877754 488999998853
No 162
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.38 E-value=1.5e-12 Score=123.91 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=72.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..++ ....|++...... . ..+.+- .
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~---~~~~~t~~~~~~~--------------~----~~~~~~----~-------- 75 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFP---ENYVPTVFENYTA--------------S----FEIDTQ----R-------- 75 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCCSEEEEEE--------------E----EESSSS----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC---CCcCCccceeEEE--------------E----EEECCE----E--------
Confidence 48999999999999999999998752 1222222111100 0 000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHH-HHHHHHHhc--CCCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEF-KRVITSLRG--HDDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~-~~~l~~L~~--~~~~ii 354 (545)
..+.|+||||...- ..+...++.++|++|+++|.++....... ..++..+.. .+.|++
T Consensus 76 --------~~l~i~Dt~G~~~~-----------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~pii 136 (205)
T 1gwn_A 76 --------IELSLWDTSGSPYY-----------DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML 136 (205)
T ss_dssp --------EEEEEEEECCSGGG-----------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEE
T ss_pred --------EEEEEEeCCCcHhh-----------hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE
Confidence 26889999997321 01223457899999999999873222333 345455543 368999
Q ss_pred EEecCCCCCC
Q 009050 355 VVLNKADQVD 364 (545)
Q Consensus 355 iVlNK~D~~~ 364 (545)
+|.||+|+.+
T Consensus 137 lv~nK~Dl~~ 146 (205)
T 1gwn_A 137 LVGCKSDLRT 146 (205)
T ss_dssp EEEECGGGGG
T ss_pred EEEechhhcc
Confidence 9999999974
No 163
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.37 E-value=7.6e-13 Score=148.24 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=89.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+|+|.+|+|||||+|+|++... .+. .....+.....+.....+..+|+|+.... ...+.+
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~--~~~-~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~------------- 74 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTG--RIH-KIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG------------- 74 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHS--SCC--------------------------CCSEEEEEETT-------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--Ccc-ccccccCCceecccchhhhhcCceEeeeeEEEEECC-------------
Confidence 4899999999999999999996431 111 00000000111111111123344431110 011111
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiV 356 (545)
..++|+||||... |...+...+..+|.+|+++|+.. +.......++..+...+.|+++|
T Consensus 75 ---------~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~llVvDa~~-g~~~~~~~~~~~~~~~~~p~ilv 133 (693)
T 2xex_A 75 ---------HRVNIIDTPGHVD-----------FTVEVERSLRVLDGAVTVLDAQS-GVEPQTETVWRQATTYGVPRIVF 133 (693)
T ss_dssp ---------EEEEEECCCCCSS-----------CCHHHHHHHHHCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCCEEEE
T ss_pred ---------eeEEEEECcCCcc-----------hHHHHHHHHHHCCEEEEEECCCC-CCcHHHHHHHHHHHHcCCCEEEE
Confidence 3789999999954 22234456788999999999987 56677777788888788999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 357 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+||+|+... +..++...+...++.. ..+..+++|+ +.++..
T Consensus 134 iNK~Dl~~~-~~~~~~~~l~~~l~~~---~~~~~ipisa--~~~~~~ 174 (693)
T 2xex_A 134 VNKMDKLGA-NFEYSVSTLHDRLQAN---AAPIQLPIGA--EDEFEA 174 (693)
T ss_dssp EECTTSTTC-CHHHHHHHHHHHHCCC---EEESEEEECC--GGGCCE
T ss_pred EECCCcccc-chHHHHHHHHHHhCCC---ceeEEeeccc--CCCcce
Confidence 999999853 2333333332223321 1122367776 444443
No 164
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.37 E-value=3.9e-13 Score=139.14 Aligned_cols=117 Identities=22% Similarity=0.367 Sum_probs=80.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+|||.||||||||+|+|+|.. +.+++.|.||+..+. |......
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~---~~v~~~pftT~~~~~-----------------------g~~~~~~--------- 118 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE---SEAAEYEFTTLVTVP-----------------------GVIRYKG--------- 118 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC---CCGGGTCSSCCCEEE-----------------------EEEEETT---------
T ss_pred eEEEECCCCCCHHHHHHHHhCCC---CcccCCCCceeeeee-----------------------EEEEeCC---------
Confidence 89999999999999999999988 778898988887754 1111111
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc-----CCCeE
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-----HDDKI 353 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~-----~~~~i 353 (545)
.++.|+||||+..+..+....+. -....++++|+|++|+|+.++ ......+...|.. ...|.
T Consensus 119 -------~~i~l~D~pGl~~~a~~~~~~g~----~~l~~i~~ad~il~vvD~~~p--~~~~~~i~~EL~~~~~~l~~k~~ 185 (376)
T 4a9a_A 119 -------AKIQMLDLPGIIDGAKDGRGRGK----QVIAVARTCNLLFIILDVNKP--LHHKQIIEKELEGVGIRLNKTPP 185 (376)
T ss_dssp -------EEEEEEECGGGCCC-----CHHH----HHHHHHHHCSEEEEEEETTSH--HHHHHHHHHHHHHTTEEETCCCC
T ss_pred -------cEEEEEeCCCccCCchhhhHHHH----HHHHHHHhcCccccccccCcc--HHHHHHHHHHHHHhhHhhccCCh
Confidence 27899999999875433322221 123457899999999999862 2222233334432 24578
Q ss_pred EEEecCCCCC
Q 009050 354 RVVLNKADQV 363 (545)
Q Consensus 354 iiVlNK~D~~ 363 (545)
++++||+|..
T Consensus 186 ~i~~nK~d~~ 195 (376)
T 4a9a_A 186 DILIKKKEKG 195 (376)
T ss_dssp CEEEEECSSS
T ss_pred hhhhhHhhhh
Confidence 8999999963
No 165
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.36 E-value=1.9e-14 Score=135.83 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=81.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+ .....++++...... ...+.+- .
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~----~-------- 81 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTY---TESYISTIGVDFKIR-----------------TIELDGK----T-------- 81 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCC---CCHHHHHHCCSEEEE-----------------EEEETTE----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCCcCCcccceEEEE-----------------EEEECCE----E--------
Confidence 4899999999999999999998774 222222222111100 0000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC---CCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH---DDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~---~~~ii 354 (545)
..+.|+||||...-.. +...++..+|++++++|+++....+....++..+... +.|++
T Consensus 82 --------~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i 142 (199)
T 3l0i_B 82 --------IKLQIWDTAGQERFRT-----------ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 142 (199)
T ss_dssp --------EEEEEECCTTCTTCCC-----------CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEE
T ss_pred --------EEEEEEECCCcHhHHH-----------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEE
Confidence 1688999999643110 1223478999999999998744344555666666543 67999
Q ss_pred EEecCCCCCCHHHHHH-HHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~-v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+...+.. ....+ .+... ++.+.+||++|.|+++
T Consensus 143 lv~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 143 LVGNKCDLTTKKVVDYTTAKEF----ADSLG---IPFLETSAKNATNVEQ 185 (199)
T ss_dssp EC-CCSSCC--CCCCSCC-CHH----HHTTT---CCBCCCCC---HHHHH
T ss_pred EEEECccCCccccCCHHHHHHH----HHHcC---CeEEEEECCCCCCHHH
Confidence 9999999875321100 00111 11111 2236899999988775
No 166
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.36 E-value=3.2e-13 Score=129.51 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=87.7
Q ss_pred ceEEEEcCCCCChHHHHHHHH-cccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLL-RTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Ll-g~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+|+|.+|||||||+|+++ |... ..+.+.+.++......... ..+
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~-----------------~~~------------- 63 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFE--KKYVATLGVEVHPLVFHTN-----------------RGP------------- 63 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHT--CEEETTTTEEEEEEEEEET-----------------TEE-------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEEEC-----------------CEE-------------
Confidence 389999999999999999954 4432 3333333333322211000 000
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc--CCCeEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIR 354 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~--~~~~ii 354 (545)
..+.++||||... . ..+...++.++|++++++|++..........++..+.. .+.|++
T Consensus 64 ---------~~~~i~Dt~G~~~---~--------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i 123 (221)
T 3gj0_A 64 ---------IKFNVWDTAGQEK---F--------GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV 123 (221)
T ss_dssp ---------EEEEEEEECSGGG---T--------SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEE
T ss_pred ---------EEEEEEeCCChHH---H--------hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 2688999999622 1 11234567899999999999873222333455555543 367999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.....+.. .+. +. ..+..+.+||++|.|+++
T Consensus 124 lv~nK~Dl~~~~~~~~~~-~~~----~~---~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 124 LCGNKVDIKDRKVKAKSI-VFH----RK---KNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp EEEECTTSSSCSSCGGGC-CHH----HH---HTCEEEECBGGGTBTTTH
T ss_pred EEEECCccccccccHHHH-HHH----HH---cCCEEEEEeCCCCCCHHH
Confidence 999999987532111100 000 00 112348899999999886
No 167
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.36 E-value=1.3e-13 Score=134.36 Aligned_cols=160 Identities=22% Similarity=0.264 Sum_probs=99.3
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc----------cceEEEEeCCCccccCCc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT----------DRFVVVMSGVDDRSIPGN 251 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t----------~r~~i~~~~~~~~~~~g~ 251 (545)
.++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +.+.+.. .+..+.+.+|++...++.
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 98 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence 479999998876 9999999999999999999999864 111 1111100 012366666666555554
Q ss_pred eeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec-----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEE
Q 009050 252 TVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLIL 325 (545)
Q Consensus 252 t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD-----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliL 325 (545)
|+..+..++... ...+ ...+.+......++++.+.+.+ .|+.+| |++||+. +|++++.+|+++|
T Consensus 99 tv~enl~~~~~~-~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~-------iAral~~~p~lll 168 (235)
T 3tif_A 99 TALENVELPLIF-KYRG--AMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA-------IARALANNPPIIL 168 (235)
T ss_dssp CHHHHHHHHHHT-CSSS--CCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH-------HHHHHTTCCSEEE
T ss_pred cHHHHHHHHHHh-hhcc--CCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH-------HHHHHHcCCCEEE
Confidence 442111110000 0000 0011112223344555555533 467788 8999999 9999999999999
Q ss_pred E-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecC
Q 009050 326 L-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNK 359 (545)
Q Consensus 326 l-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK 359 (545)
+ .+|+.. ..++.+++..+.+. +..+++|.|.
T Consensus 169 lDEPts~LD~~~---~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 169 ADQPTWALDSKT---GEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp EESTTTTSCHHH---HHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred EeCCcccCCHHH---HHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 8 455543 46677788887654 7889998884
No 168
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.35 E-value=4.6e-13 Score=137.65 Aligned_cols=165 Identities=19% Similarity=0.269 Sum_probs=104.7
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC--------cccceEEEEeCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP--------TTDRFVVVMSGV 243 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p--------~t~r~~i~~~~~ 243 (545)
+++.|+.. .++++++|+..+ +++|+||+|||||||+|+|+|...| |.+ +..+. ...+..+.+.+|
T Consensus 10 ls~~y~~~--~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ 87 (359)
T 3fvq_A 10 LSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ 87 (359)
T ss_dssp EEEEETTE--EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECT
T ss_pred EEEEECCE--EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeC
Confidence 45577764 489999999876 9999999999999999999999865 111 01100 011234556666
Q ss_pred CccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 244 DDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 244 ~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
+....+..|+..+..+... ..+ ..+.+......++++.+.+.+ .|+.+| |++||++ +|++++
T Consensus 88 ~~~l~p~ltV~eni~~~l~---~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRVa-------lArAL~ 154 (359)
T 3fvq_A 88 EGVLFPHLTVYRNIAYGLG---NGK---GRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAA-------LARALA 154 (359)
T ss_dssp TCCCCTTSCHHHHHHTTST---TSS---CCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHH-------HHHHHT
T ss_pred CCcCCCCCCHHHHHHHHHH---HcC---CChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHHHHH
Confidence 6655555554222211110 000 011122334455666666654 578888 8999999 999999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHH-hcCCCeEEEEecC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSL-RGHDDKIRVVLNK 359 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L-~~~~~~iiiVlNK 359 (545)
.+|+++|+ .+|+.. ..++...+..+ ++.+.++++|.|.
T Consensus 155 ~~P~lLLLDEPts~LD~~~---r~~l~~~l~~~~~~~g~tvi~vTHd 198 (359)
T 3fvq_A 155 PDPELILLDEPFSALDEQL---RRQIREDMIAALRANGKSAVFVSHD 198 (359)
T ss_dssp TCCSEEEEESTTTTSCHHH---HHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 99999998 455532 34555544443 5568899999884
No 169
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.35 E-value=4.3e-13 Score=132.46 Aligned_cols=174 Identities=16% Similarity=0.209 Sum_probs=106.0
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc-------cceEEEEeCCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT-------DRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t-------~r~~i~~~~~~ 244 (545)
+++.|+.. .++++++|+..+ +++|+|+||||||||+|.|+|...| |.+ +.+.+.+ .+..+.+.+++
T Consensus 13 l~~~y~~~--~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 90 (257)
T 1g6h_A 13 IVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQT 90 (257)
T ss_dssp EEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCC
T ss_pred eEEEECCE--eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccC
Confidence 45567653 489999998876 9999999999999999999999864 111 1111100 02235555555
Q ss_pred ccccCCceeEeecCCCCCCcccccc---cc-----hhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChH
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGT---AF-----LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFT 311 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~---~~-----~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~ 311 (545)
....+..|+..+..+.... ...+. .+ ..+........++++.+.+.+ .|+.+| |++||+.
T Consensus 91 ~~l~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~------ 163 (257)
T 1g6h_A 91 PQPLKEMTVLENLLIGEIC-PGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE------ 163 (257)
T ss_dssp CGGGGGSBHHHHHHGGGTS-TTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH------
T ss_pred CccCCCCcHHHHHHHHHhh-hccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH------
Confidence 4444433331111110000 00000 00 000111223445566665543 466777 8999998
Q ss_pred HHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCC
Q 009050 312 GVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (545)
Q Consensus 312 ~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~ 363 (545)
+|++++.+|+++|+ .+|+.. ...+.+++..+++.+..++++.|..+.+
T Consensus 164 -iAraL~~~p~lllLDEPts~LD~~~---~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 164 -IGRALMTNPKMIVMDEPIAGVAPGL---AHDIFNHVLELKAKGITFLIIEHRLDIV 216 (257)
T ss_dssp -HHHHHHTCCSEEEEESTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred -HHHHHHcCCCEEEEeCCccCCCHHH---HHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 89999999999998 556543 5667788888876688999999977754
No 170
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.35 E-value=3e-12 Score=120.31 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=82.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+++|... ..++..+++....... ++ .+.|- .
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~--~~~~~~~~~~~~~~~~-----------~~------~~~~~----~-------- 55 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHD--SMDSDXEVLGEDTYER-----------TL------MVDGE----S-------- 55 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSC--CC----GGGCTTEEEE-----------EE------EETTE----E--------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcC--CcCccccccceeEEEE-----------EE------EECCe----E--------
Confidence 3799999999999999999998664 4444333322211100 00 00010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh----cCCCeE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR----GHDDKI 353 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~----~~~~~i 353 (545)
..+.++||+|....+ .. +...+...+|.+++++|.++....+....++..+. ..+.|+
T Consensus 56 --------~~l~~~Dt~~~~~~~-~~---------~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~pi 117 (192)
T 2cjw_A 56 --------ATIILLDMWENKGEN-EW---------LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 117 (192)
T ss_dssp --------EEEEEECCCCC-----CT---------TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCE
T ss_pred --------EEEEEEEeccCcchh-hh---------HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeE
Confidence 156789999963211 11 12234567899999999986322233334444332 236899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|.||+|+.....+....+.. + ....+ ...+.+||++|.|+++
T Consensus 118 ilV~NK~Dl~~~r~v~~~~~~~-~--a~~~~---~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 118 ILVGNKSDLVRXREVSVSEGRA-X--AVVFD---XKFIETSAAVQHNVKE 161 (192)
T ss_dssp EEEEECTTCGGGCCSCHHHHHH-H--HHHTT---CEEEECBTTTTBSHHH
T ss_pred EEEEechhhhccccccHHHHHH-H--HHHhC---CceEEeccccCCCHHH
Confidence 9999999986421111001111 0 11111 2337899999999875
No 171
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.34 E-value=9.5e-13 Score=135.78 Aligned_cols=98 Identities=20% Similarity=0.195 Sum_probs=54.6
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHH
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ 366 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~ 366 (545)
.+.|+||||+...+ ....+.+|++++++|+... .....+...+ .+.+.++|+||+|+.+..
T Consensus 168 ~~iliDT~Gi~~~~--------------~~l~~~~d~vl~V~d~~~~---~~~~~i~~~i--l~~~~ivVlNK~Dl~~~~ 228 (349)
T 2www_A 168 DIILIETVGVGQSE--------------FAVADMVDMFVLLLPPAGG---DELQGIKRGI--IEMADLVAVTKSDGDLIV 228 (349)
T ss_dssp SEEEEECCCC--CH--------------HHHHTTCSEEEEEECCC-----------------CCSCSEEEECCCSGGGHH
T ss_pred CEEEEECCCcchhh--------------hhHHhhCCEEEEEEcCCcc---hhHHHhHHHH--HhcCCEEEEeeecCCCch
Confidence 68899999985321 1235799999999999752 1111111112 245789999999998654
Q ss_pred HHHHHHHHHHHHhccccc---CCccEEEEeeccCCCccCc
Q 009050 367 QLMRVYGALMWSLGKVLN---TPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 367 ~l~~v~~~l~~~l~k~~~---~~~v~~v~iSa~~~~~~~~ 403 (545)
........+...+..... ...++.+++||++|.|+++
T Consensus 229 ~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~ 268 (349)
T 2www_A 229 PARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISE 268 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHH
Confidence 433333332222222111 0123348899999999886
No 172
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.34 E-value=3.2e-13 Score=148.60 Aligned_cols=170 Identities=15% Similarity=0.157 Sum_probs=82.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCC----------Cccc--ceEEEEeCCCccccCCceeEeec-CCCCCCcc
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPE----------PTTD--RFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLT 265 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~----------p~t~--r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~ 265 (545)
.|+|+|.+|+|||||+|+|++... .+.... +... ....++........+|+|+.... .+.+.+
T Consensus 179 ~I~iiG~~d~GKSTLi~~Ll~~~~--~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~-- 254 (592)
T 3mca_A 179 HLVVTGHVDSGKSTMLGRIMFELG--EINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK-- 254 (592)
T ss_dssp EEEEECCSSSTHHHHHHHHHHHHH--CC----------------------------------------------------
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC--CcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC--
Confidence 899999999999999999987653 322221 1111 11122222233345666663321 111111
Q ss_pred cccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCC----Cc--cHHH
Q 009050 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL----DI--SDEF 339 (545)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~----~~--~~~~ 339 (545)
..+.||||||...-.+ .+...+..+|++|+|+|+... ++ ..+.
T Consensus 255 --------------------~~i~iiDTPGh~~f~~-----------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt 303 (592)
T 3mca_A 255 --------------------KIYEIGDAPGHRDFIS-----------GMIAGASSADFAVLVVDSSQNNFERGFLENGQT 303 (592)
T ss_dssp ------------------------CCEEESSSEEEE-----------ECCC-------CCSEEEEEECCSSTTSCSCSSH
T ss_pred --------------------eEEEEEECCChHHHHH-----------HHHHHHhhCCEEEEEEECCCCccccccccchHH
Confidence 3789999999853111 111235789999999999752 12 3445
Q ss_pred HHHHHHHhcCCCe-EEEEecCCCCCC--HHHHHHHHHHHHHHhcccccC--CccEEEEeeccCCCccCc
Q 009050 340 KRVITSLRGHDDK-IRVVLNKADQVD--TQQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 340 ~~~l~~L~~~~~~-iiiVlNK~D~~~--~~~l~~v~~~l~~~l~k~~~~--~~v~~v~iSa~~~~~~~~ 403 (545)
.+.+..+...+.| +++|+||+|+.+ .+.+..+...+...+.+..++ ..++.+++||++|.|+.+
T Consensus 304 ~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e 372 (592)
T 3mca_A 304 REHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372 (592)
T ss_dssp HHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCS
T ss_pred HHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccc
Confidence 5556656666775 999999999975 444444443332222122222 244568999999999985
No 173
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.34 E-value=5.7e-13 Score=137.28 Aligned_cols=164 Identities=21% Similarity=0.226 Sum_probs=105.2
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--------CCCCCCCCcccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--------GAHIGPEPTTDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--------~~~v~~~p~t~r~~i~~~~~~~~ 246 (545)
+++.|++. .++++++|+..+ +++|+||||||||||++.|+|...| |..+...+. .+..+.+.+|+..
T Consensus 9 l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r~ig~v~Q~~~ 85 (359)
T 2yyz_A 9 LKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP-KYREVGMVFQNYA 85 (359)
T ss_dssp EEEEETTE--EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGTTEEEECSSCC
T ss_pred EEEEECCE--EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh-hhCcEEEEecCcc
Confidence 45567653 489999998876 9999999999999999999999865 111111111 1234556666655
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
..+..|+..+..+.. ...+ ..+.+......++++.+.+.+ .|+.+| |++||++ +|++++.+|
T Consensus 86 l~~~ltv~eni~~~~---~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRva-------lArAL~~~P 152 (359)
T 2yyz_A 86 LYPHMTVFENIAFPL---RARR---ISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVA-------LARALVKQP 152 (359)
T ss_dssp CCTTSCHHHHHHGGG---SSSC---SHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH-------HHHHHTTCC
T ss_pred cCCCCCHHHHHHHHH---HhcC---CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHHHHHcCC
Confidence 555544422211111 0000 011112233455666666643 577888 8999999 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
+++|+ .+|+. ...++.+.++.+.+ .+.++++|.|.
T Consensus 153 ~lLLLDEP~s~LD~~---~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (359)
T 2yyz_A 153 KVLLFDEPLSNLDAN---LRMIMRAEIKHLQQELGITSVYVTHD 193 (359)
T ss_dssp SEEEEESTTTTSCHH---HHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred CEEEEECCcccCCHH---HHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 99998 45554 24566777777754 47889998884
No 174
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.33 E-value=2.9e-13 Score=133.47 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=99.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc-----ccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT-----TDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~-----t~r~~i~~~~~~~~ 246 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+. ..+..+.+.++...
T Consensus 21 l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~ 98 (256)
T 1vpl_A 21 LRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG 98 (256)
T ss_dssp EEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCC
T ss_pred EEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCC
Confidence 4556765 3489999998876 9999999999999999999998854 111 111110 01122444444433
Q ss_pred ccCCceeEeecCCCCCCccccccc-chh------hhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHH
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTA-FLS------KFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVT 314 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~-~~~------~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia 314 (545)
..++.|+ ..+. +.. .........++++.+.+.+ .|+.+| |++||+. +|
T Consensus 99 l~~~ltv-------------~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~-------lA 158 (256)
T 1vpl_A 99 AYRNMQG-------------IEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLL-------IA 158 (256)
T ss_dssp CCTTSBH-------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHH-------HH
T ss_pred CCCCCcH-------------HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH-------HH
Confidence 3333232 1111 000 0011122344555555543 467788 8999998 89
Q ss_pred HHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 315 ~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.+.
T Consensus 159 raL~~~p~lllLDEPts~LD~~~---~~~l~~~l~~l~~~g~tiiivtHd 205 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLN---AREVRKILKQASQEGLTILVSSHN 205 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHcCCCEEEEeCCccccCHHH---HHHHHHHHHHHHhCCCEEEEEcCC
Confidence 999999999998 555542 566778888887667888888873
No 175
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.32 E-value=7.5e-13 Score=137.02 Aligned_cols=165 Identities=22% Similarity=0.282 Sum_probs=102.0
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--C------CCCCCCCcccceEEEEeCCCc
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--G------AHIGPEPTTDRFVVVMSGVDD 245 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~------~~v~~~p~t~r~~i~~~~~~~ 245 (545)
.+++.|+.. .++++++|+..+ +++|+|++|||||||++.|+|...| | ..+...+. .+..+.+.+|+.
T Consensus 16 ~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r~ig~v~Q~~ 92 (372)
T 1v43_A 16 NLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP-KDRNISMVFQSY 92 (372)
T ss_dssp EEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGGTEEEEEC--
T ss_pred EEEEEECCE--EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh-hhCcEEEEecCc
Confidence 345577663 489999998876 9999999999999999999999865 1 11111111 123355556655
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
...+..|+..+..+.. ...+ ..+.+......++++.+.+.+ .|+.+| |++||++ +|++++.+
T Consensus 93 ~l~~~ltv~eni~~~~---~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva-------lArAL~~~ 159 (372)
T 1v43_A 93 AVWPHMTVYENIAFPL---KIKK---FPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVA-------VARAIVVE 159 (372)
T ss_dssp ----CCCHHHHHHTTC---C--C---CCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHH-------HHHHHTTC
T ss_pred ccCCCCCHHHHHHHHH---HhcC---CCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHHHHhcC
Confidence 5555544422211111 0000 011112233445566666543 678888 8999999 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
|+++|+ .+|+. ...++.+.++.+.+ .+.++++|.|.
T Consensus 160 P~lLLLDEP~s~LD~~---~r~~l~~~l~~l~~~~g~tvi~vTHd 201 (372)
T 1v43_A 160 PDVLLMDEPLSNLDAK---LRVAMRAEIKKLQQKLKVTTIYVTHD 201 (372)
T ss_dssp CSEEEEESTTTTSCHH---HHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred CCEEEEcCCCccCCHH---HHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 999998 45554 25667777777754 47889999883
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.32 E-value=8.1e-13 Score=141.22 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=66.4
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccH-------HHHHHHHHHhcCCCe-EEEEec
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISD-------EFKRVITSLRGHDDK-IRVVLN 358 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~-------~~~~~l~~L~~~~~~-iiiVlN 358 (545)
.+.|+||||... |...+...+..+|++|+++|++. +..+ +..+.+..+...+.| +++|+|
T Consensus 86 ~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviN 153 (458)
T 1f60_A 86 QVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGV-GEFEAGISKDGQTREHALLAFTLGVRQLIVAVN 153 (458)
T ss_dssp EEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSH-HHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred eEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCc-CccccccCcchhHHHHHHHHHHcCCCeEEEEEE
Confidence 789999999742 22344556789999999999985 2222 444555555556665 999999
Q ss_pred CCCCCC--HHHHHHHHHHHHHHhcccccC--CccEEEEeeccCCCccCc
Q 009050 359 KADQVD--TQQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 359 K~D~~~--~~~l~~v~~~l~~~l~k~~~~--~~v~~v~iSa~~~~~~~~ 403 (545)
|+|+.+ .+.+..+...+...+ +..++ ..++.+++||++|.++.+
T Consensus 154 K~Dl~~~~~~~~~~i~~~~~~~l-~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 154 KMDSVKWDESRFQEIVKETSNFI-KKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHH-HHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred ccccccCCHHHHHHHHHHHHHHH-HHcCCCccCceEEEeecccCcCccc
Confidence 999983 333333333221111 11122 124458999999999986
No 177
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.32 E-value=1.3e-12 Score=137.52 Aligned_cols=104 Identities=22% Similarity=0.122 Sum_probs=68.8
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe-EEEEecCCCCCCH
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVVLNKADQVDT 365 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~-iiiVlNK~D~~~~ 365 (545)
.+.|+||||... |...+...+..+|++|+++|+++ +...+..+++..+...+.| +++|+||+|+.+.
T Consensus 76 ~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~ 143 (405)
T 2c78_A 76 HYSHVDCPGHAD-----------YIKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp EEEEEECCCSGG-----------GHHHHHHHHTTCSSEEEEEETTT-CCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC
T ss_pred EEEEEECCChHH-----------HHHHHHHHHHHCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEEECccccCc
Confidence 789999999842 22244556789999999999987 5567777788777777888 8999999999853
Q ss_pred HH-HHHHHHHHHHHhccc-ccCCccEEEEeeccCCCccC
Q 009050 366 QQ-LMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPVN 402 (545)
Q Consensus 366 ~~-l~~v~~~l~~~l~k~-~~~~~v~~v~iSa~~~~~~~ 402 (545)
++ +..+...+...+... +....++.+++||++|.++.
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~ 182 (405)
T 2c78_A 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQM 182 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhh
Confidence 22 222222211111111 11123445899999998743
No 178
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.32 E-value=1.2e-13 Score=149.35 Aligned_cols=153 Identities=20% Similarity=0.285 Sum_probs=96.2
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
..|+|+++|.+|+|||||+|+|++..+ . ....+++|... .. ..+...+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~--~-~~~~~giT~~i------------------~~----~~v~~~~g------ 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV--A-AMEAGGITQHI------------------GA----FLVSLPSG------ 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH--H-HSSSCCBCCCT------------------TS----CCBCSSCS------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--c-cccCCceeEEE------------------eE----EEEEeCCC------
Confidence 456899999999999999999998774 2 12222222111 00 00000000
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..++||||||...-.. .....+..+|++|+++|++. +...+..+.+..+...+.|+++
T Consensus 52 ----------~~i~~iDTPGhe~f~~-----------~~~~~~~~aD~vILVVDa~d-g~~~qt~e~l~~~~~~~vPiIV 109 (537)
T 3izy_P 52 ----------EKITFLDTPGHAAFSA-----------MRARGTQVTDIVILVVAADD-GVMKQTVESIQHAKDAHVPIVL 109 (537)
T ss_dssp ----------SCCBCEECSSSCCTTT-----------SBBSSSBSBSSCEEECBSSS-CCCHHHHHHHHHHHTTTCCEEE
T ss_pred ----------CEEEEEECCChHHHHH-----------HHHHHHccCCEEEEEEECCC-CccHHHHHHHHHHHHcCCcEEE
Confidence 2689999999743111 11123678999999999987 6677888888888888899999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcccc-c-CCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGKVL-N-TPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k~~-~-~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+... .++...+. ..+... . ...++.+++||++|.|+++
T Consensus 110 ViNKiDl~~~~~-~~v~~~l~-~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 110 AINKCDKAEADP-EKVKKELL-AYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CCBSGGGTTTSC-CSSSSHHH-HTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEecccccccch-HHHHHHHH-hhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999999874210 00001110 111111 1 1234558899999999876
No 179
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.31 E-value=7.3e-12 Score=130.05 Aligned_cols=102 Identities=11% Similarity=-0.000 Sum_probs=69.6
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeE-EEEec-CCCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKI-RVVLN-KADQVD 364 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~i-iiVlN-K~D~~~ 364 (545)
.+.|+||||... |...+...+..+|++|+++| .. +...+..+.+..+...+.|. ++++| |+|+ +
T Consensus 61 ~i~iiDtPGh~~-----------f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~ 126 (370)
T 2elf_A 61 NMVFVDAHSYPK-----------TLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLLGFKHGIIALTRSDST-H 126 (370)
T ss_dssp EEEEEECTTTTT-----------CHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C
T ss_pred EEEEEECCChHH-----------HHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C
Confidence 689999999843 22233445689999999999 54 66777777777777777777 89999 9999 6
Q ss_pred HHHHHHHHHHHHHHhcccccCCccEEEE--eeccC---CCccCc
Q 009050 365 TQQLMRVYGALMWSLGKVLNTPEVVRVY--IGSFN---DKPVNE 403 (545)
Q Consensus 365 ~~~l~~v~~~l~~~l~k~~~~~~v~~v~--iSa~~---~~~~~~ 403 (545)
.+.+.++...+...+.+ .....++.++ +||++ +.|+++
T Consensus 127 ~~~~~~~~~~i~~~l~~-~~~~~~~ii~~~~SA~~~~~g~gi~~ 169 (370)
T 2elf_A 127 MHAIDELKAKLKVITSG-TVLQDWECISLNTNKSAKNPFEGVDE 169 (370)
T ss_dssp HHHHHHHHHHHHHHTTT-STTTTCEEEECCCCTTSSSTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCCCceEEEecccccccCcCCCCHHH
Confidence 54444433333222222 2223455689 99999 877664
No 180
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.30 E-value=5.1e-13 Score=132.20 Aligned_cols=163 Identities=23% Similarity=0.274 Sum_probs=100.9
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc----c----cceEEEEeC
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT----T----DRFVVVMSG 242 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~----t----~r~~i~~~~ 242 (545)
.+++.|++ ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +.+.+- . .+..+.+.+
T Consensus 29 ~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~ 106 (263)
T 2olj_A 29 QLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVF 106 (263)
T ss_dssp EEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEEC
T ss_pred eEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEe
Confidence 34556765 3489999998876 9999999999999999999998864 111 011100 0 022344555
Q ss_pred CCccccCCceeEeecCC---CCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHH
Q 009050 243 VDDRSIPGNTVAVQADM---PFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVT 314 (545)
Q Consensus 243 ~~~~~~~g~t~~~~~~~---~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia 314 (545)
++....+..|+..+..+ .+.+. .+........++++.+.+.+ .|+.+| |++||+. +|
T Consensus 107 Q~~~l~~~~tv~e~l~~~~~~~~~~--------~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~-------lA 171 (263)
T 2olj_A 107 QRFNLFPHMTVLNNITLAPMKVRKW--------PREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVA-------IA 171 (263)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTSCC--------CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH-------HH
T ss_pred CCCcCCCCCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH-------HH
Confidence 54433333332111100 00000 01111223345566665543 467788 8999998 89
Q ss_pred HHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 315 ~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
++++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.+
T Consensus 172 raL~~~p~lllLDEPts~LD~~~---~~~~~~~l~~l~~~g~tvi~vtH 217 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEM---VGEVLSVMKQLANEGMTMVVVTH 217 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHH---HHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHCCCCEEEEeCCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEcC
Confidence 999999999998 566543 56677888888666788888877
No 181
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.30 E-value=7.4e-13 Score=136.59 Aligned_cols=164 Identities=20% Similarity=0.249 Sum_probs=103.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--C------CCCCCCCcccceEEEEeCCCcc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--G------AHIGPEPTTDRFVVVMSGVDDR 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~------~~v~~~p~t~r~~i~~~~~~~~ 246 (545)
+++.|+.. .++++++|+..+ +++|+|++|||||||+|.|+|...| | ..+...+. .+..+.+.+|+..
T Consensus 9 l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r~ig~v~Q~~~ 85 (362)
T 2it1_A 9 IVKKFGNF--TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP-KDRNVGLVFQNWA 85 (362)
T ss_dssp EEEESSSS--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGTTEEEECTTCC
T ss_pred EEEEECCE--EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH-hHCcEEEEecCcc
Confidence 45567653 489999998876 9999999999999999999999864 1 11111111 1223455555544
Q ss_pred ccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCC
Q 009050 247 SIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC 321 (545)
Q Consensus 247 ~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~a 321 (545)
..+..|+..+..+. +...+ ..+.+......++++.+.+.+ .|+.+| |++||++ +|++++.+|
T Consensus 86 l~~~ltv~eni~~~---~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva-------lArAL~~~P 152 (362)
T 2it1_A 86 LYPHMTVYKNIAFP---LELRK---APREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVA-------IARALVKEP 152 (362)
T ss_dssp CCTTSCHHHHHHHH---HHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHH-------HHHHHTTCC
T ss_pred cCCCCCHHHHHHHH---HHhcC---CCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHH-------HHHHHHcCC
Confidence 44443331111110 00000 011112233455666666644 577788 8999999 899999999
Q ss_pred CEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 322 DLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 322 DliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
+++|+ .+|+.. ..++.+.++.+.+ .+.++++|.|.
T Consensus 153 ~lLLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tvi~vTHd 193 (362)
T 2it1_A 153 EVLLLDEPLSNLDALL---RLEVRAELKRLQKELGITTVYVTHD 193 (362)
T ss_dssp SEEEEESGGGGSCHHH---HHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred CEEEEECccccCCHHH---HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 99999 566643 5667778877754 47889999883
No 182
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.30 E-value=6e-13 Score=136.83 Aligned_cols=163 Identities=21% Similarity=0.257 Sum_probs=102.0
Q ss_pred eeEEe-CCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--C------CCCCCCCcccceEEEEeCCCc
Q 009050 177 VTYRF-NDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--G------AHIGPEPTTDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~-~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~------~~v~~~p~t~r~~i~~~~~~~ 245 (545)
+++.| ++ ..++++++|+..+ +++|+|+||||||||+|.|+|...| | ..+...+ ..+..+.+.+|+.
T Consensus 20 l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v~Q~~ 96 (355)
T 1z47_A 20 VEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-PQKRNVGLVFQNY 96 (355)
T ss_dssp EEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-GGGSSEEEECGGG
T ss_pred EEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-hhhCcEEEEecCc
Confidence 44567 55 3489999998876 9999999999999999999999864 1 1111111 1123345555544
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcC
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAK 320 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~ 320 (545)
...+..|+..+..+. +...+ ..+.+......++++.+.+-+ .|+.+| |++||+. +|++++.+
T Consensus 97 ~l~~~ltv~eni~~~---l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRva-------lArAL~~~ 163 (355)
T 1z47_A 97 ALFQHMTVYDNVSFG---LREKR---VPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVA-------LARALAPR 163 (355)
T ss_dssp CCCTTSCHHHHHHHH---HHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH-------HHHHHTTC
T ss_pred ccCCCCCHHHHHHHH---HHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH-------HHHHHHcC
Confidence 444443331111110 00000 011112233455666666644 577888 8999999 89999999
Q ss_pred CCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEec
Q 009050 321 CDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLN 358 (545)
Q Consensus 321 aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlN 358 (545)
|+++|+ .+|+.. ..++.++++.+.+ .+.++++|.+
T Consensus 164 P~lLLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tvi~vTH 204 (355)
T 1z47_A 164 PQVLLFDEPFAAIDTQI---RRELRTFVRQVHDEMGVTSVFVTH 204 (355)
T ss_dssp CSEEEEESTTCCSSHHH---HHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCEEEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEECC
Confidence 999998 566542 5667777777754 4788888888
No 183
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.30 E-value=8.5e-12 Score=135.24 Aligned_cols=66 Identities=27% Similarity=0.336 Sum_probs=55.0
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~ 364 (545)
.++||||||... |...+...+..+|.+|+++|++. +.......++..+...+.|+++|+||+|+..
T Consensus 83 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~allVvDa~~-g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 83 LINLLDTPGHAD-----------FTEDTYRTLTAVDSALMVIDAAK-GVEPRTIKLMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEEECCCCSTT-----------CCHHHHHGGGGCSEEEEEEETTT-CSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred EEEEEECCCchh-----------HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 789999999853 22245566889999999999997 5677888888888888999999999999974
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.30 E-value=7.6e-12 Score=124.27 Aligned_cols=121 Identities=18% Similarity=0.303 Sum_probs=77.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|+|||||+|+|+|..+ ..+++.+.++........ ...+
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~--~~~~~~~~~t~~~~~~~~-----------------~~~~-------------- 86 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERV--VSISPFQSEGPRPVMVSR-----------------SRAG-------------- 86 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSSCCCSSCEEEEE-----------------EETT--------------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCcceeeEEEEE-----------------eeCC--------------
Confidence 3699999999999999999999886 556665555443221100 0011
Q ss_pred hcCchhhccCceeecCCCCCChh---hhhhhhccChHHHHHH-HhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC-C--
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGE---KQRTQRAYDFTGVTSW-FAAKCDLILLLFDPHKLDISDEFKRVITSLRGH-D-- 350 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sge---kq~v~~~~~~~~ia~~-~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~-~-- 350 (545)
..+.++||||+.+.. .+... .+.+. ....+|++|+++|.+...+.....++++.+... +
T Consensus 87 --------~~l~iiDTpG~~~~~~~~~~~~~------~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~ 152 (270)
T 1h65_A 87 --------FTLNIIDTPGLIEGGYINDMALN------IIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG 152 (270)
T ss_dssp --------EEEEEEECCCSEETTEECHHHHH------HHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG
T ss_pred --------eEEEEEECCCCCCCccchHHHHH------HHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcc
Confidence 268999999986521 11111 11111 135799999997665423455555666666432 2
Q ss_pred --CeEEEEecCCCCCCH
Q 009050 351 --DKIRVVLNKADQVDT 365 (545)
Q Consensus 351 --~~iiiVlNK~D~~~~ 365 (545)
.++++|+||+|+...
T Consensus 153 ~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 153 IWNKAIVALTHAQFSPP 169 (270)
T ss_dssp GGGGEEEEEECCSCCCG
T ss_pred cccCEEEEEECcccCCc
Confidence 589999999999754
No 185
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.30 E-value=1.9e-12 Score=125.18 Aligned_cols=164 Identities=20% Similarity=0.224 Sum_probs=99.2
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCccc----------ceEEEEe
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTTD----------RFVVVMS 241 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t~----------r~~i~~~ 241 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||+|.|+|...| |.+ +...+-+. +..+.+.
T Consensus 10 l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v 87 (224)
T 2pcj_A 10 IKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFV 87 (224)
T ss_dssp EEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEE
T ss_pred EEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEE
Confidence 4556765 3489999998776 9999999999999999999998854 111 01111000 1234444
Q ss_pred CCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHH
Q 009050 242 GVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSW 316 (545)
Q Consensus 242 ~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~ 316 (545)
+++....+..|+..+..+.. ...+ ..+........++++.+.+.+ .|+.+| |++||+. +|++
T Consensus 88 ~q~~~l~~~~tv~e~l~~~~---~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~-------lara 154 (224)
T 2pcj_A 88 FQFHYLIPELTALENVIVPM---LKMG---KPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVA-------IARA 154 (224)
T ss_dssp CSSCCCCTTSCHHHHHHHHH---HHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHH-------HHHH
T ss_pred ecCcccCCCCCHHHHHHhHH---HHcC---CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------HHHH
Confidence 44433333322211100000 0000 000111223445566665543 467778 8999998 8999
Q ss_pred HhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 317 ~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|
T Consensus 155 l~~~p~lllLDEPt~~LD~~~---~~~~~~~l~~l~~~g~tvi~vtH 198 (224)
T 2pcj_A 155 LANEPILLFADEPTGNLDSAN---TKRVMDIFLKINEGGTSIVMVTH 198 (224)
T ss_dssp TTTCCSEEEEESTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHcCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHHCCCEEEEEcC
Confidence 9999999988 455542 45677788888666788888877
No 186
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.30 E-value=1.6e-12 Score=124.69 Aligned_cols=165 Identities=17% Similarity=0.220 Sum_probs=102.7
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc-ccceEEEEeCCCccccC
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT-TDRFVVVMSGVDDRSIP 249 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~-t~r~~i~~~~~~~~~~~ 249 (545)
.+++.|+. .++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+. ..+..+.+.+++....+
T Consensus 15 ~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T 1sgw_A 15 DLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPR 91 (214)
T ss_dssp EEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCT
T ss_pred EEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCC
Confidence 35557765 489999988766 9999999999999999999998754 111 011110 11223444444443333
Q ss_pred CceeEeecCCC--CCCcccccccchhhhhhhcCchhhccCceeec---CCCCCC-hhhhhhhhccChHHHHHHHhcCCCE
Q 009050 250 GNTVAVQADMP--FSGLTTFGTAFLSKFECSQMPHSLLEHITLVD---TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (545)
Q Consensus 250 g~t~~~~~~~~--~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD---TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDl 323 (545)
+.|+..+..+. +.+. ... .....++++.+.+.+ .|+.+| |++||+. +|++++.+|++
T Consensus 92 ~~tv~enl~~~~~~~~~---------~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~-------laraL~~~p~l 154 (214)
T 1sgw_A 92 KISVEDYLKAVASLYGV---------KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQ-------LASTLLVNAEI 154 (214)
T ss_dssp TSBHHHHHHHHHHHTTC---------CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHH-------HHHHTTSCCSE
T ss_pred CCCHHHHHHHHHHhcCC---------chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHH-------HHHHHHhCCCE
Confidence 33321110000 0000 000 112234444554432 355667 8999998 89999999999
Q ss_pred EEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCC
Q 009050 324 ILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (545)
Q Consensus 324 iLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~ 363 (545)
+|+ .+|+.. ...+.+++..+.+.+..++++.+..+.+
T Consensus 155 llLDEPts~LD~~~---~~~l~~~l~~~~~~g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 155 YVLDDPVVAIDEDS---KHKVLKSILEILKEKGIVIISSREELSY 196 (214)
T ss_dssp EEEESTTTTSCTTT---HHHHHHHHHHHHHHHSEEEEEESSCCTT
T ss_pred EEEECCCcCCCHHH---HHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 999 677764 5777888888865578899999987755
No 187
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.29 E-value=8.6e-13 Score=135.89 Aligned_cols=165 Identities=20% Similarity=0.253 Sum_probs=104.1
Q ss_pred eeEEeCCcccC--cccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC---------cccceEEEE
Q 009050 177 VTYRFNDFVSP--LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP---------TTDRFVVVM 240 (545)
Q Consensus 177 ~~~~~~~~~~~--~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p---------~t~r~~i~~ 240 (545)
+++.|+. .. ++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +..+. ...+..+.+
T Consensus 9 l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~ 86 (353)
T 1oxx_K 9 VSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGM 86 (353)
T ss_dssp EEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEE
T ss_pred EEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEE
Confidence 4556765 34 88999998876 9999999999999999999999864 111 01100 011223445
Q ss_pred eCCCccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHH
Q 009050 241 SGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 241 ~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~ 315 (545)
.+|+....+..|+..+..+.. ...+ ..+.+......++++.+.+.+ .|+.+| |++||+. +|+
T Consensus 87 v~Q~~~l~~~ltv~eni~~~~---~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRva-------lAr 153 (353)
T 1oxx_K 87 VFQTWALYPNLTAFENIAFPL---TNMK---MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA-------LAR 153 (353)
T ss_dssp EETTSCCCTTSCHHHHHHGGG---TTSS---CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH-------HHH
T ss_pred EeCCCccCCCCCHHHHHHHHH---HHcC---CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHH
Confidence 555444444444321111110 0000 011112233455666666644 577888 8999999 899
Q ss_pred HHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 316 WFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 316 ~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
+++.+|+++|+ .+|+.. ..++.++++.+.+ .+.++++|.|.
T Consensus 154 aL~~~P~lLLLDEP~s~LD~~~---r~~l~~~l~~l~~~~g~tvi~vTHd 200 (353)
T 1oxx_K 154 ALVKDPSLLLLDEPFSNLDARM---RDSARALVKEVQSRLGVTLLVVSHD 200 (353)
T ss_dssp HHTTCCSEEEEESTTTTSCGGG---HHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HHHhCCCEEEEECCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 99999999999 577653 5777788888754 47899999883
No 188
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.29 E-value=5.7e-12 Score=135.01 Aligned_cols=169 Identities=17% Similarity=0.225 Sum_probs=84.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCC----------CCCCcccc--eEEEEeCCCccccCCceeEeec-CCCCCCcc
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHI----------GPEPTTDR--FVVVMSGVDDRSIPGNTVAVQA-DMPFSGLT 265 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v----------~~~p~t~r--~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~ 265 (545)
.|+++|..|+|||||+|+|++..- ... +.....+. ...++.....+...|.|+.... .+.+.+
T Consensus 45 ~i~iiG~vd~GKSTLi~~Ll~~~g--~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~-- 120 (467)
T 1r5b_A 45 NIVFIGHVDAGKSTLGGNILFLTG--MVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-- 120 (467)
T ss_dssp EEEEEECGGGTHHHHHHHHHHHTT--SSCHHHHHHHHHHTCC----------------------------CCEEECSS--
T ss_pred EEEEEECCCCCHHHHHHHHHHHhC--CCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC--
Confidence 799999999999999999986431 110 00000000 0111111122233455553221 111111
Q ss_pred cccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCcc-------HH
Q 009050 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDIS-------DE 338 (545)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~-------~~ 338 (545)
..+.|+||||... |.......+..+|++|+++|+.. +.. .+
T Consensus 121 --------------------~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~-g~~e~sf~~~~q 168 (467)
T 1r5b_A 121 --------------------RRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARR-GEFEAGFERGGQ 168 (467)
T ss_dssp --------------------EEEEECCCCC----------------------TTSCSEEEEEEECST-THHHHTTSTTCC
T ss_pred --------------------eEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCc-CccccccCCCCc
Confidence 3789999999842 21223345789999999999986 221 23
Q ss_pred HHHHHHHHhcCCCe-EEEEecCCCCCC----HHHHHHHHHHHHHHhcccccCC---ccEEEEeeccCCCccCc
Q 009050 339 FKRVITSLRGHDDK-IRVVLNKADQVD----TQQLMRVYGALMWSLGKVLNTP---EVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 339 ~~~~l~~L~~~~~~-iiiVlNK~D~~~----~~~l~~v~~~l~~~l~k~~~~~---~v~~v~iSa~~~~~~~~ 403 (545)
..+.+..+...+.| +++|+||+|+.+ .+.+..+...+...+.+..++. .++.+++||++|.|+.+
T Consensus 169 t~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~ 241 (467)
T 1r5b_A 169 TREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 241 (467)
T ss_dssp HHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred HHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccc
Confidence 44455555556776 999999999964 2333333222211111111222 45568999999999986
No 189
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.29 E-value=7.3e-12 Score=135.86 Aligned_cols=166 Identities=19% Similarity=0.165 Sum_probs=91.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc----ceEEEEeCCCccccCCceeEee-cCCCCCCcccccccch
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD----RFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFL 272 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~----r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~ 272 (545)
..|+|+|++|+|||||+|+|++... .+ ....... ....++.....+..+|.|+... ..+.+.+
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g--~i-~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--------- 81 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQ--AI-QTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--------- 81 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------------------------------CCTTEEEEEETT---------
T ss_pred CEEEEECCCCChHHHHHHHHHhhcC--Cc-cccceeecCccccceeeccchhcccCCcceeeeEEEEEECC---------
Confidence 4899999999999999999997542 11 1100000 0001111111122334433110 0011111
Q ss_pred hhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe
Q 009050 273 SKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK 352 (545)
Q Consensus 273 ~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ 352 (545)
..++|+||||... |...+...+..+|.+|+++|+.. +.......++..+...+.|
T Consensus 82 -------------~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~~~ip 136 (529)
T 2h5e_A 82 -------------CLVNLLDTPGHED-----------FSEDTYRTLTAVDCCLMVIDAAK-GVEDRTRKLMEVTRLRDTP 136 (529)
T ss_dssp -------------EEEEEECCCCSTT-----------CCHHHHHGGGGCSEEEEEEETTT-CSCHHHHHHHHHHTTTTCC
T ss_pred -------------eEEEEEECCCChh-----------HHHHHHHHHHHCCEEEEEEeCCc-cchHHHHHHHHHHHHcCCC
Confidence 3789999999843 22234456789999999999987 5667777888888878899
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+..... .++...+...++.....-.. ...|+.++.|+.+
T Consensus 137 iivviNK~Dl~~~~~-~~~~~~i~~~l~~~~~~~~~--pi~sa~~~~Gv~d 184 (529)
T 2h5e_A 137 ILTFMNKLDRDIRDP-MELLDEVENELKIGCAPITW--PIGCGKLFKGVYH 184 (529)
T ss_dssp EEEEEECTTSCCSCH-HHHHHHHHHHHCCEEEESEE--EESCGGGCCEEEE
T ss_pred EEEEEcCcCCccccH-HHHHHHHHHHhCCCccceec--ceecccCcceeee
Confidence 999999999975322 12333332223321110011 1257778877765
No 190
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.29 E-value=1e-11 Score=122.82 Aligned_cols=121 Identities=20% Similarity=0.271 Sum_probs=74.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|+|||||+|+|+|... ..++..+.++....... ..+.+
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~--~~~~~~~~~t~~~~~~~-----------------~~~~~-------------- 83 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQV--VRVSPFQAEGLRPVMVS-----------------RTMGG-------------- 83 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCC--SCCCSSCC-CCCCEEEE-----------------EEETT--------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCcceeeEEEE-----------------EEECC--------------
Confidence 3699999999999999999999886 56666555443322100 00111
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHh--cCCCEEEEEeCCCCCCccHHHHHHHHHHhcC-----C
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFA--AKCDLILLLFDPHKLDISDEFKRVITSLRGH-----D 350 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~--~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~-----~ 350 (545)
..+.|+||||+.+.... ..+ +......++ ..+|++|+++|.+...+......+++.+... .
T Consensus 84 --------~~l~liDTpG~~~~~~~-~~~---~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~ 151 (262)
T 3def_A 84 --------FTINIIDTPGLVEAGYV-NHQ---ALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151 (262)
T ss_dssp --------EEEEEEECCCSEETTEE-CHH---HHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGG
T ss_pred --------eeEEEEECCCCCCcccc-hHH---HHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhh
Confidence 27899999999652110 000 001111122 3789999997665433455555666655432 2
Q ss_pred CeEEEEecCCCCC
Q 009050 351 DKIRVVLNKADQV 363 (545)
Q Consensus 351 ~~iiiVlNK~D~~ 363 (545)
.++++|+||+|+.
T Consensus 152 ~~~ivv~nK~Dl~ 164 (262)
T 3def_A 152 CKTLLVLTHAQFS 164 (262)
T ss_dssp GGEEEEEECTTCC
T ss_pred cCEEEEEeCcccC
Confidence 3899999999986
No 191
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.29 E-value=1.2e-11 Score=131.27 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=67.4
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCC-------ccHHHHHHHHHHhcCCC-eEEEEec
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD-------ISDEFKRVITSLRGHDD-KIRVVLN 358 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~-------~~~~~~~~l~~L~~~~~-~iiiVlN 358 (545)
.+.|+||||... |...+...+..+|++|+++|+.+ + ...+..+.+..+...+. ++++|+|
T Consensus 85 ~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviN 152 (435)
T 1jny_A 85 FFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVN 152 (435)
T ss_dssp EEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred EEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEE
Confidence 789999999853 22234556799999999999987 4 22245555555555554 6899999
Q ss_pred CCCCCC----HHHHHHHHHHHHHHhcccccC--CccEEEEeeccCCCccCc
Q 009050 359 KADQVD----TQQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 359 K~D~~~----~~~l~~v~~~l~~~l~k~~~~--~~v~~v~iSa~~~~~~~~ 403 (545)
|+|+.+ .+.+..+...+...+.. .++ ..++.+++||++|.|+.+
T Consensus 153 K~Dl~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 153 KMDLTEPPYDEKRYKEIVDQVSKFMRS-YGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp CGGGSSSTTCHHHHHHHHHHHHHHHHH-TTCCCTTCEEEECBTTTTBTTTB
T ss_pred cccCCCccccHHHHHHHHHHHHHHHHH-cCCCcCCceEEEeecccCccccc
Confidence 999986 22233332222111111 121 135568999999999986
No 192
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.28 E-value=5.9e-13 Score=132.53 Aligned_cols=164 Identities=19% Similarity=0.290 Sum_probs=103.5
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc--------ccceEEEEeC
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT--------TDRFVVVMSG 242 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~--------t~r~~i~~~~ 242 (545)
.+++.|+.. ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +.+.+. ..+..+.+.+
T Consensus 12 ~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~ 90 (275)
T 3gfo_A 12 ELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVF 90 (275)
T ss_dssp EEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEEC
T ss_pred EEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEE
Confidence 355577542 2489999998876 9999999999999999999998854 111 111110 0122344444
Q ss_pred CCcc-ccCCceeEeecCCCCCCcccccccc-------hhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccC
Q 009050 243 VDDR-SIPGNTVAVQADMPFSGLTTFGTAF-------LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 243 ~~~~-~~~g~t~~~~~~~~~~gl~~~~~~~-------~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~ 309 (545)
|++. .....|+ ..+.. ..+.+......++++.+.+.+ .|+.+| |++||+.
T Consensus 91 Q~~~~~~~~~tv-------------~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~---- 153 (275)
T 3gfo_A 91 QDPDNQLFSASV-------------YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA---- 153 (275)
T ss_dssp SSGGGTCCSSBH-------------HHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH----
T ss_pred cCcccccccCcH-------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH----
Confidence 4321 1111111 11110 011122233455666666644 567788 8999999
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHh-cCCCeEEEEecCCCCC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLR-GHDDKIRVVLNKADQV 363 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~-~~~~~iiiVlNK~D~~ 363 (545)
+|++++.+|+++|+ .+|+.. ..++.+++..++ +.+..+++|.|..+.+
T Consensus 154 ---iAraL~~~P~lLlLDEPts~LD~~~---~~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 154 ---IAGVLVMEPKVLILDEPTAGLDPMG---VSEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp ---HHHHHTTCCSEEEEECTTTTCCHHH---HHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred ---HHHHHHcCCCEEEEECccccCCHHH---HHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 89999999999998 555543 466778888886 5588999999977754
No 193
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.28 E-value=5.7e-12 Score=138.00 Aligned_cols=164 Identities=25% Similarity=0.264 Sum_probs=90.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+|+|..|+|||||+++|++..- ....... ...++.....+...|.|..... ...|... .+.
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg--~i~~~~~----~~~~~D~~~~ErerGITI~~~~~~~~~~~~--dg~------- 71 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTG--AISEREK----REQLLDTLDVERERGITVKMQAVRMFYKAK--DGN------- 71 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHT--C---------------------------CCCCSEEEEEECT--TSC-------
T ss_pred eEEEEECCCCCCHHHHHHHHHhccC--Ccccccc----cccccccchhhhcccceeeeeEEEEEEEcC--CCC-------
Confidence 3799999999999999999987542 2111100 0011111111223444432111 1111100 000
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiV 356 (545)
-..++|+||||... |...+...+..+|.+|+++|++. +...+....+..+...+.|+++|
T Consensus 72 --------~~~inliDTPGh~d-----------F~~ev~r~l~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~~ipiIvv 131 (600)
T 2ywe_A 72 --------TYKLHLIDTPGHVD-----------FSYEVSRALAACEGALLLIDASQ-GIEAQTVANFWKAVEQDLVIIPV 131 (600)
T ss_dssp --------EEEEEEECCCCSGG-----------GHHHHHHHHHTCSEEEEEEETTT-BCCHHHHHHHHHHHHTTCEEEEE
T ss_pred --------eEEEEEEECCCcHh-----------HHHHHHHHHHhCCEEEEEEECCC-CccHHHHHHHHHHHHCCCCEEEE
Confidence 02788999999843 22234455789999999999987 55666666666666678999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHhcccccC--CccEEEEeeccCCCccCc
Q 009050 357 LNKADQVDTQQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 357 lNK~D~~~~~~l~~v~~~l~~~l~k~~~~--~~v~~v~iSa~~~~~~~~ 403 (545)
+||+|+.+.. ..++...+. +.++. .++ +++||++|.|+++
T Consensus 132 iNKiDl~~a~-~~~v~~el~----~~lg~~~~~v--i~vSAktg~GI~~ 173 (600)
T 2ywe_A 132 INKIDLPSAD-VDRVKKQIE----EVLGLDPEEA--ILASAKEGIGIEE 173 (600)
T ss_dssp EECTTSTTCC-HHHHHHHHH----HTSCCCGGGC--EECBTTTTBSHHH
T ss_pred EeccCccccC-HHHHHHHHH----HhhCCCcccE--EEEEeecCCCchH
Confidence 9999997532 223333332 22222 234 8999999999875
No 194
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.28 E-value=8.3e-12 Score=139.75 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=80.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+|+|.+|+|||||+|+|+.....-...+.. .....++.....+...|.|+.... .+.+.+
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v---~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~------------- 76 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV---HEGAATMDFMEQERERGITITAAVTTCFWKD------------- 76 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC-------------------------------CCEEEEEETT-------------
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCccccee---cCCceeccCchhhhhcccccccceEEEEECC-------------
Confidence 489999999999999999999543100111100 000011111111112333331110 011111
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiV 356 (545)
..++|+||||... |...+...+..+|.+|+++|+.. +.......++..+...+.|+++|
T Consensus 77 ---------~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~~~p~ivv 135 (691)
T 1dar_A 77 ---------HRINIIDTPGHVD-----------FTIEVERSMRVLDGAIVVFDSSQ-GVEPQSETVWRQAEKYKVPRIAF 135 (691)
T ss_dssp ---------EEEEEECCCSSTT-----------CHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEE
T ss_pred ---------eEEEEEECcCccc-----------hHHHHHHHHHHCCEEEEEEECCC-CcchhhHHHHHHHHHcCCCEEEE
Confidence 3789999999853 22244556788999999999987 55666777777777788999999
Q ss_pred ecCCCCCCHHHHHHHHHHH
Q 009050 357 LNKADQVDTQQLMRVYGAL 375 (545)
Q Consensus 357 lNK~D~~~~~~l~~v~~~l 375 (545)
+||+|+... +..++...+
T Consensus 136 iNKiD~~~~-~~~~~~~~l 153 (691)
T 1dar_A 136 ANKMDKTGA-DLWLVIRTM 153 (691)
T ss_dssp EECTTSTTC-CHHHHHHHH
T ss_pred EECCCcccC-CHHHHHHHH
Confidence 999999753 233344444
No 195
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.28 E-value=3.9e-12 Score=133.50 Aligned_cols=164 Identities=17% Similarity=0.145 Sum_probs=93.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|+|||||+|+|++... ..+...... .. .+.....+...|.|+.... ..+. . ..
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~~~~---~~g~~~~~~-~~-~~d~~~~e~~~giTi~~~~-~~~~---~-~~--------- 65 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITKILA---EGGGAKFKK-YE-EIDNAPEERARGITINAAH-VEYS---T-AA--------- 65 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH---HTTSBCCCC-HH-HHHSCCEEEETTEEEECEE-EEEE---C-SS---------
T ss_pred EEEEEeCCCCCHHHHHHHHhChhh---hcCccccch-hh-hhhcCHHHHhcCcEEEeee-EEec---c-CC---------
Confidence 699999999999999999998531 001000000 00 0000001113455542211 0000 0 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe-EEEEe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVVL 357 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~-iiiVl 357 (545)
..+.|+||||... |.......+..+|++|+++|++. +...+..+.+..+...+.| +++|+
T Consensus 66 -------~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~~vp~iivvi 126 (397)
T 1d2e_A 66 -------RHYAHTDCPGHAD-----------YVKNMITGTAPLDGCILVVAAND-GPMPQTREHLLLARQIGVEHVVVYV 126 (397)
T ss_dssp -------CEEEEEECSSHHH-----------HHHHHHHTSSCCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred -------eEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCeEEEEE
Confidence 3789999999732 22234456789999999999987 4566667777777777888 78999
Q ss_pred cCCCCCCHHH-HHHHHHHHHHHhcccccC--CccEEEEeeccCCCcc
Q 009050 358 NKADQVDTQQ-LMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPV 401 (545)
Q Consensus 358 NK~D~~~~~~-l~~v~~~l~~~l~k~~~~--~~v~~v~iSa~~~~~~ 401 (545)
||+|+.+.++ +..+...+...+ +.... ..++.+++||++|.+.
T Consensus 127 NK~Dl~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~i~~SA~~g~n~ 172 (397)
T 1d2e_A 127 NKADAVQDSEMVELVELEIRELL-TEFGYKGEETPIIVGSALCALEQ 172 (397)
T ss_dssp ECGGGCSCHHHHHHHHHHHHHHH-HHTTSCTTTSCEEECCHHHHHTT
T ss_pred ECcccCCCHHHHHHHHHHHHHHH-HHcCCCcccCcEEEeehhhcccc
Confidence 9999985322 222222111111 11122 2345589999998763
No 196
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.27 E-value=8.5e-13 Score=130.67 Aligned_cols=162 Identities=22% Similarity=0.316 Sum_probs=100.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc------------------
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT------------------ 233 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t------------------ 233 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +.+.+-+
T Consensus 12 l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T 1b0u_A 12 LHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLR 89 (262)
T ss_dssp EEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHH
T ss_pred EEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHH
Confidence 4556765 3489999998877 9999999999999999999998854 111 1111100
Q ss_pred -cceEEEEeCCCccccCCceeEeecCC---CCCCcccccccchhhhhhhcCchhhccCceee----c-CCCCCC-hhhhh
Q 009050 234 -DRFVVVMSGVDDRSIPGNTVAVQADM---PFSGLTTFGTAFLSKFECSQMPHSLLEHITLV----D-TPGVLS-GEKQR 303 (545)
Q Consensus 234 -~r~~i~~~~~~~~~~~g~t~~~~~~~---~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li----D-TPG~~s-gekq~ 303 (545)
.+..+.+.+++....+..|+..+..+ .+.+. .+........++++.+.+. | .|+.+| |++||
T Consensus 90 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~--------~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 90 LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL--------SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCC--------CHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred HHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCC--------CHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHH
Confidence 01234445554433333333111100 00000 0011122334555555553 3 467788 89999
Q ss_pred hhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 304 TQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 304 v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
+. +|++++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|
T Consensus 162 v~-------lAraL~~~p~lllLDEPts~LD~~~---~~~~~~~l~~l~~~g~tvi~vtH 211 (262)
T 1b0u_A 162 VS-------IARALAMEPDVLLFDEPTSALDPEL---VGEVLRIMQQLAEEGKTMVVVTH 211 (262)
T ss_dssp HH-------HHHHHHTCCSEEEEESTTTTSCHHH---HHHHHHHHHHHHHTTCCEEEECS
T ss_pred HH-------HHHHHhcCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHhCCCEEEEEeC
Confidence 98 89999999999998 556543 56677888888666788888887
No 197
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.27 E-value=1.3e-11 Score=130.17 Aligned_cols=105 Identities=13% Similarity=0.185 Sum_probs=66.6
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCc-cHHHHHHHHHHhcCC-CeEEEEecCCCCC
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDI-SDEFKRVITSLRGHD-DKIRVVLNKADQV 363 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~-~~~~~~~l~~L~~~~-~~iiiVlNK~D~~ 363 (545)
..+.|+||||... |.......+..+|++|+++|+.. +. ..+..+.+..+...+ .++++|+||+|+.
T Consensus 83 ~~i~iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~-g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 83 RRVSFIDAPGHEA-----------LMTTMLAGASLMDGAILVIAANE-PCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp EEEEEEECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTS-CSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cEEEEEECCChHH-----------HHHHHHhhhhhCCEEEEEEECCC-CCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 3789999999621 22233345678999999999986 33 445555454444333 4799999999999
Q ss_pred CHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 364 DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 364 ~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+.+.....+..+...+... ....++.+++||++|.|+++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi~~ 189 (410)
T 1kk1_A 151 DKEKALENYRQIKEFIEGT-VAENAPIIPISALHGANIDV 189 (410)
T ss_dssp CHHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSHHH
T ss_pred CHHHHHHHHHHHHHHHHhc-CcCCCeEEEeeCCCCCCHHH
Confidence 8654434333332212221 11234458999999998764
No 198
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.27 E-value=1e-12 Score=128.41 Aligned_cols=162 Identities=19% Similarity=0.217 Sum_probs=100.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc-------cceEEEEeCCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT-------DRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t-------~r~~i~~~~~~ 244 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +.+.+.+ .+..+.+.+++
T Consensus 12 l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 89 (240)
T 1ji0_A 12 LHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEG 89 (240)
T ss_dssp EEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSS
T ss_pred EEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecC
Confidence 4556765 3489999998766 9999999999999999999998864 111 1111100 01225555655
Q ss_pred ccccCCceeEeecCCCC-CCcccccccchhhhhhhcCchhhccCce-eec----CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 245 DRSIPGNTVAVQADMPF-SGLTTFGTAFLSKFECSQMPHSLLEHIT-LVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~-~gl~~~~~~~~~~~~~~~~~~~lL~~v~-liD----TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
....++.|+..+..+.. ... ...........+++.+. +.+ .|+.+| |++||+. +|+++
T Consensus 90 ~~l~~~ltv~enl~~~~~~~~--------~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~-------lAraL 154 (240)
T 1ji0_A 90 RRIFPELTVYENLMMGAYNRK--------DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLA-------IGRAL 154 (240)
T ss_dssp CCCCTTSBHHHHHHGGGTTCC--------CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHH-------HHHHH
T ss_pred CccCCCCcHHHHHHHhhhcCC--------CHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHH-------HHHHH
Confidence 54444444321111100 000 00011112233444442 432 567788 8999998 89999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
+.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|
T Consensus 155 ~~~p~lllLDEPts~LD~~~---~~~l~~~l~~~~~~g~tvi~vtH 197 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPIL---VSEVFEVIQKINQEGTTILLVEQ 197 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHH---HHHHHHHHHHHHHTTCCEEEEES
T ss_pred HcCCCEEEEcCCcccCCHHH---HHHHHHHHHHHHHCCCEEEEEec
Confidence 999999998 555543 46677788887666788888888
No 199
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.27 E-value=8.4e-13 Score=130.92 Aligned_cols=164 Identities=19% Similarity=0.220 Sum_probs=97.7
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc------ccceEEEEeCCC
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT------TDRFVVVMSGVD 244 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~------t~r~~i~~~~~~ 244 (545)
.+++.|+. ..++++++|+..+ +++|+|+||||||||+|.|+|...| |.+ +.+.+- ..+..+.+.++.
T Consensus 16 ~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~ 93 (266)
T 4g1u_C 16 HLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQY 93 (266)
T ss_dssp EEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSC
T ss_pred eEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecC
Confidence 35567776 3489999998876 9999999999999999999998854 111 011100 011223444443
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhc
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAA 319 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~ 319 (545)
....+..|+..+..+ +..............++++.+.+.+ .|+.+| |++||+. +|++++.
T Consensus 94 ~~~~~~~tv~e~l~~--------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~-------iAraL~~ 158 (266)
T 4g1u_C 94 SELAFPFSVSEVIQM--------GRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQ-------LARVLAQ 158 (266)
T ss_dssp CCCCSCCBHHHHHHG--------GGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHH-------HHHHHHH
T ss_pred CccCCCCCHHHHHHh--------hhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH-------HHHHHhc
Confidence 332222222110000 0000000111223344555555543 456677 8999999 8999998
Q ss_pred ------CCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEecC
Q 009050 320 ------KCDLILL-----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLNK 359 (545)
Q Consensus 320 ------~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlNK 359 (545)
+|+++|+ .+|+.. ..++.++++.+.+. +..+++|.|.
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~---~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYH---QQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHH---HHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred ccccCCCCCEEEEeCccccCCHHH---HHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 9999888 455542 45677888887654 4578888773
No 200
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.27 E-value=3e-12 Score=134.21 Aligned_cols=158 Identities=14% Similarity=0.161 Sum_probs=87.7
Q ss_pred eEEeCCcccCcccccccccCc--e--EEEEcCCCCChHHHHHHHHcccCCCCCCCC-CCcccceEEEEeCCCccccCCce
Q 009050 178 TYRFNDFVSPLLTNSDFDAKP--M--VMLLGQYSTGKTTFIKHLLRTSYPGAHIGP-EPTTDRFVVVMSGVDDRSIPGNT 252 (545)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~--~--V~lvG~~naGKSTLlN~Llg~~~p~~~v~~-~p~t~r~~i~~~~~~~~~~~g~t 252 (545)
++.|+.. + ++++++...+ + ++|+|+||||||||+|.|+|..+.|..+.. .+.+++..+.+..+..
T Consensus 22 ~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~------- 91 (427)
T 2qag_B 22 HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQES------- 91 (427)
T ss_dssp CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--------
T ss_pred EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecC-------
Confidence 4456542 3 8888888776 6 999999999999999999998653222211 2222222222211100
Q ss_pred eEeecCCCCCCcccccccchhhhhhhcCchhhccCceeecCCCCCChh-h----hhhhhcc--ChHHHHHHH--------
Q 009050 253 VAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGE-K----QRTQRAY--DFTGVTSWF-------- 317 (545)
Q Consensus 253 ~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sge-k----q~v~~~~--~~~~ia~~~-------- 317 (545)
++ ...++++|+||+.... . ..+...+ .+.......
T Consensus 92 ----------~l--------------------~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~ 141 (427)
T 2qag_B 92 ----------NV--------------------RLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLH 141 (427)
T ss_dssp -----------C--------------------EEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCC
T ss_pred ----------cc--------------------ccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 10 0257788888875410 0 0000000 000011111
Q ss_pred -hcCC--C-EEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHH
Q 009050 318 -AAKC--D-LILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMW 377 (545)
Q Consensus 318 -~~~a--D-liLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~ 377 (545)
..++ | +++++.|+.. ++...+.++++.|. .+.++++|+||+|.++..++......+..
T Consensus 142 ~~~d~rVh~~v~fI~d~~~-~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 142 TYHDSRIHVCLYFIAPTGH-SLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp CSCC--CCEEEEEECCCC----CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred ccccccccEEEEEEeCCCC-CCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 1122 2 3666777765 66777788999887 67899999999999998887776665543
No 201
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.26 E-value=9.6e-12 Score=136.51 Aligned_cols=66 Identities=23% Similarity=0.294 Sum_probs=51.0
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~ 364 (545)
.++|+||||...-.. .....+..+|++|+++|+++ ++..+..+.+..+...+.|+++|+||+|+..
T Consensus 71 ~i~liDTPGhe~F~~-----------~~~r~~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTT-----------LRKRGGALADLAILIVDINE-GFKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp EEEEECCCTTSCCTT-----------SBCSSSBSCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred CEEEEECCCcHHHHH-----------HHHHHHhhCCEEEEEEECCC-CccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence 589999999854100 11123578999999999987 5667777788888888899999999999863
No 202
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.26 E-value=8.7e-12 Score=136.77 Aligned_cols=165 Identities=19% Similarity=0.234 Sum_probs=86.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+|+|..|+|||||+++|++..- ....... ...++.....+...|.|..... .+.|.+. .+.
T Consensus 6 nI~IiGh~d~GKTTLi~rLl~~tg--~i~~~~~----~~~~~D~~~~ErerGiTi~~~~~~~~~~~~--~g~-------- 69 (599)
T 3cb4_D 6 NFSIIAHIDHGKSTLSDRIIQICG--GLSDREM----EAQVLDSMDLERERGITIKAQSVTLDYKAS--DGE-------- 69 (599)
T ss_dssp EEEEECCC----CCHHHHHHHHTT--C------------------------------CEEEEEEECT--TSC--------
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--Ccccccc----cccccccchhhhcccceeeeeEEEEEEecC--CCC--------
Confidence 699999999999999999997542 2211100 0111111112223455442111 1111110 000
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
-..++||||||... |...+...+..+|.+|+++|++. +...+....+..+...+.|+++|+
T Consensus 70 -------~~~l~liDTPGh~d-----------F~~ev~~~l~~aD~aILVVDa~~-gv~~qt~~~~~~~~~~~ipiIvVi 130 (599)
T 3cb4_D 70 -------TYQLNFIDTPGHVD-----------FSYEVSRSLAACEGALLVVDAGQ-GVEAQTLANCYTAMEMDLEVVPVL 130 (599)
T ss_dssp -------EEEEEEEECCCCGG-----------GHHHHHHHHHHCSEEEEEEETTT-CCCTHHHHHHHHHHHTTCEEEEEE
T ss_pred -------eEEEEEEECCCchH-----------HHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEee
Confidence 02789999999843 22234455788999999999987 445555555555556788999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
||+|+.+.. ..++...+...++ ....++ +++||++|.|+++
T Consensus 131 NKiDl~~a~-~~~v~~ei~~~lg--~~~~~v--i~vSAktg~GI~~ 171 (599)
T 3cb4_D 131 NKIDLPAAD-PERVAEEIEDIVG--IDATDA--VRCSAKTGVGVQD 171 (599)
T ss_dssp ECTTSTTCC-HHHHHHHHHHHTC--CCCTTC--EEECTTTCTTHHH
T ss_pred eccCccccc-HHHHHHHHHHHhC--CCcceE--EEeecccCCCchh
Confidence 999997532 2222233321222 112245 8999999999875
No 203
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.26 E-value=1.1e-11 Score=130.28 Aligned_cols=158 Identities=18% Similarity=0.278 Sum_probs=93.4
Q ss_pred ccccccC--ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceE-EEEeCCCccccCCceeEeecCCCCCCcccc
Q 009050 191 NSDFDAK--PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFV-VVMSGVDDRSIPGNTVAVQADMPFSGLTTF 267 (545)
Q Consensus 191 ~~~~~~~--~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~-i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~ 267 (545)
+++++.+ ..|+|+|+||||||||||+|+|.. ..++..+.|+... +... .+.+
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~---~~i~~~~ftTl~p~~G~V------------------~~~~---- 203 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH---PKIAPYPFTTLSPNLGVV------------------EVSE---- 203 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC---CEECCCTTCSSCCEEEEE------------------ECSS----
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC---ccccCcccceecceeeEE------------------EecC----
Confidence 4444444 489999999999999999999986 3445555444321 1100 0000
Q ss_pred cccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh
Q 009050 268 GTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR 347 (545)
Q Consensus 268 ~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~ 347 (545)
. ..+.++||||+..+..+.. .+.. .....+++++.+|+++|.+. ....++..+.+++.
T Consensus 204 -~----------------~~~~l~DtpGli~~a~~~~--~L~~--~fl~~~era~~lL~vvDls~-~~~~~ls~g~~el~ 261 (416)
T 1udx_A 204 -E----------------ERFTLADIPGIIEGASEGK--GLGL--EFLRHIARTRVLLYVLDAAD-EPLKTLETLRKEVG 261 (416)
T ss_dssp -S----------------CEEEEEECCCCCCCGGGSC--CSCH--HHHHHHTSSSEEEEEEETTS-CHHHHHHHHHHHHH
T ss_pred -c----------------ceEEEEeccccccchhhhh--hhhH--HHHHHHHHHHhhhEEeCCcc-CCHHHHHHHHHHHH
Confidence 0 2678999999976322111 1111 01123578999999999862 23334444444433
Q ss_pred c-----CCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 348 G-----HDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 348 ~-----~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
. ...|.++|+||+|......+..+...+ .. .....+.+||.+++++++
T Consensus 262 ~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l----~~----~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 262 AYDPALLRRPSLVALNKVDLLEEEAVKALADAL----AR----EGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp HHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH----HT----TTSCEEECCTTTCTTHHH
T ss_pred HHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH----Hh----cCCeEEEEECCCccCHHH
Confidence 2 246899999999998763222222221 11 112338999999999875
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.26 E-value=1.1e-11 Score=127.14 Aligned_cols=35 Identities=23% Similarity=0.097 Sum_probs=29.6
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHccc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~ 221 (545)
.+++++++.... +|+|+|+||||||||+|.|+|..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 367777776654 99999999999999999999765
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.26 E-value=3.2e-12 Score=131.40 Aligned_cols=99 Identities=16% Similarity=0.096 Sum_probs=57.2
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCH
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~ 365 (545)
..+.|+||||+..... .....+|++++++|+... ... ..+.. ...+.|.++|+||+|+.+.
T Consensus 149 ~~i~liDTpG~~~~~~--------------~~~~~aD~vl~Vvd~~~~---~~~-~~l~~-~~~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 149 YDVVIVETVGVGQSET--------------EVARMVDCFISLQIAGGG---DDL-QGIKK-GLMEVADLIVINKDDGDNH 209 (341)
T ss_dssp CSEEEEEEECCTTHHH--------------HHHTTCSEEEEEECC----------CCCCH-HHHHHCSEEEECCCCTTCH
T ss_pred CCEEEEeCCCccchHH--------------HHHHhCCEEEEEEeCCcc---HHH-HHHHH-hhhcccCEEEEECCCCCCh
Confidence 3799999999965321 125899999999999752 111 11110 0013578999999999876
Q ss_pred HHHHHHHHHHHHHhcccc---cCCccEEEEeeccCCCccCc
Q 009050 366 QQLMRVYGALMWSLGKVL---NTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 366 ~~l~~v~~~l~~~l~k~~---~~~~v~~v~iSa~~~~~~~~ 403 (545)
.++......+...++..- ..-.++.+++||++|.|+++
T Consensus 210 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~ 250 (341)
T 2p67_A 210 TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDE 250 (341)
T ss_dssp HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHH
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHH
Confidence 554443333321111110 00012348999999999886
No 206
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.26 E-value=3.4e-12 Score=139.14 Aligned_cols=153 Identities=17% Similarity=0.158 Sum_probs=81.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.+|||||||+|+|++..+. ....|+. ...+... ..+++. ...+.+ .+.
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~---~~~~~t~-g~~~~~~------~~~~~~----~v~~~~---~~~-------- 96 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFD---PKESQTH-GLNVVTK------QAPNIK----GLENDD---ELK-------- 96 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC---------------CCCEEEE------EGGGSG----GGTTCS---TTT--------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCcc-ceEEEEe------cccccc----ceeecC---CCc--------
Confidence 47999999999999999999998752 1111111 1111000 000000 000000 000
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC--CCeEEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH--DDKIRV 355 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~--~~~iii 355 (545)
-..+.++||||..... .+...++.++|++|+|+|++. .+....++..+... +.|+++
T Consensus 97 -------~~~~~i~Dt~G~e~~~-----------~~~~~~l~~~d~ii~V~D~s~---~~~~~~~~~~l~~~~~~~pvil 155 (535)
T 3dpu_A 97 -------ECLFHFWDFGGQEIMH-----------ASHQFFMTRSSVYMLLLDSRT---DSNKHYWLRHIEKYGGKSPVIV 155 (535)
T ss_dssp -------TCEEEEECCCSCCTTT-----------TTCHHHHHSSEEEEEEECGGG---GGGHHHHHHHHHHHSSSCCEEE
T ss_pred -------eEEEEEEECCcHHHHH-----------HHHHHHccCCcEEEEEEeCCC---chhHHHHHHHHHHhCCCCCEEE
Confidence 0268999999963211 123356789999999999986 24556677777653 489999
Q ss_pred EecCCCCCCHHHHH-HHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~-~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
|+||+|+.+..++. +..... ....+ .+.+.+||++|.|+++
T Consensus 156 V~NK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~vSA~~g~gi~e 197 (535)
T 3dpu_A 156 VMNKIDENPSYNIEQKKINER----FPAIE---NRFHRISCKNGDGVES 197 (535)
T ss_dssp EECCTTTCTTCCCCHHHHHHH----CGGGT---TCEEECCC-----CTT
T ss_pred EEECCCcccccccCHHHHHHH----HHhcC---CceEEEecCcccCHHH
Confidence 99999997532211 111111 12222 2238999999999987
No 207
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.25 E-value=4.6e-12 Score=128.75 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=87.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+++|.+|+|||||+|.+++..+. .....|+....... ..+.+. .
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~----~~~~~t~~~~~~~~-----------------~~~~~~----~-------- 202 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSAN-----------------VMVDGK----P-------- 202 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC----CSCCCCSEEEEEEE-----------------EEETTE----E--------
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCC----cccCCcccceeEEE-----------------EEECCE----E--------
Confidence 47999999999999999999987642 22222222221100 000010 0
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH-HHHHHHhcC--CCeEE
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK-RVITSLRGH--DDKIR 354 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~-~~l~~L~~~--~~~ii 354 (545)
..+.++||||..... .+...++.++|++++++|+++........ .++..+... +.|++
T Consensus 203 --------~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i 263 (332)
T 2wkq_A 203 --------VNLGLWDTAGLEDYD-----------RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII 263 (332)
T ss_dssp --------EEEEEEEECCCGGGT-----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEE
T ss_pred --------EEEEEEeCCCchhhh-----------HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 156799999973211 12234578999999999998732222222 344444432 78999
Q ss_pred EEecCCCCCCHHHHHHHHHH---------HHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 355 VVLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~---------l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+|+||+|+.+.....+.... ....+.+..+. ...+.+||++|.|+++
T Consensus 264 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~ 319 (332)
T 2wkq_A 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKT 319 (332)
T ss_dssp EEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHH
T ss_pred EEEEchhcccccchhhhccccccccccHHHHHHHHHHcCC--cEEEEecCCCCcCHHH
Confidence 99999998653221111100 00001111122 1348899999999875
No 208
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.25 E-value=3.5e-12 Score=125.51 Aligned_cols=163 Identities=22% Similarity=0.239 Sum_probs=99.9
Q ss_pred eeEEeC-CcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCcee
Q 009050 177 VTYRFN-DFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTV 253 (545)
Q Consensus 177 ~~~~~~-~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~ 253 (545)
+++.|+ + ..++++++|+..+ +++|+|+||||||||++.|+|...| .++... .+..+.+.+++....+..|+
T Consensus 10 l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~-~~~~i~~v~q~~~~~~~~tv 83 (253)
T 2nq2_C 10 LGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKIE-VYQSIGFVPQFFSSPFAYSV 83 (253)
T ss_dssp EEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC---SEEEEE-ECSCEEEECSCCCCSSCCBH
T ss_pred EEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE-EeccEEEEcCCCccCCCCCH
Confidence 455676 4 3489999988776 9999999999999999999998853 222111 12335556665544443333
Q ss_pred EeecCCCCCCcccccccc-hhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-
Q 009050 254 AVQADMPFSGLTTFGTAF-LSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL- 326 (545)
Q Consensus 254 ~~~~~~~~~gl~~~~~~~-~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl- 326 (545)
..+..+.... ..+. + ...........++++.+.+.+ .|+.+| |++||+. +|++++.+|+++|+
T Consensus 84 ~enl~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~-------lAraL~~~p~lllLD 153 (253)
T 2nq2_C 84 LDIVLMGRST--HINT-FAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLIL-------IARAIASECKLILLD 153 (253)
T ss_dssp HHHHHGGGGG--GSCT-TCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH-------HHHHHHTTCSEEEES
T ss_pred HHHHHHhhhh--hccc-ccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEe
Confidence 1111110000 0000 0 000011122334455555533 466778 8999998 89999999999988
Q ss_pred ----EeCCCCCCccHHHHHHHHHHhcC-CCeEEEEec
Q 009050 327 ----LFDPHKLDISDEFKRVITSLRGH-DDKIRVVLN 358 (545)
Q Consensus 327 ----vlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVlN 358 (545)
.+|+.. ...+.+++..+.+. +..++++.|
T Consensus 154 EPts~LD~~~---~~~l~~~l~~l~~~~g~tvi~vtH 187 (253)
T 2nq2_C 154 EPTSALDLAN---QDIVLSLLIDLAQSQNMTVVFTTH 187 (253)
T ss_dssp SSSTTSCHHH---HHHHHHHHHHHHHTSCCEEEEEES
T ss_pred CCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEec
Confidence 455542 45677788887655 788888887
No 209
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.25 E-value=4.5e-12 Score=131.38 Aligned_cols=158 Identities=22% Similarity=0.285 Sum_probs=100.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc----------ccceEEEEe
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT----------TDRFVVVMS 241 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~----------t~r~~i~~~ 241 (545)
+++.|+.. .++++++|+..+ +++|+|++|||||||+|.|+|...| |.+ +..++- ..+..+.+.
T Consensus 9 l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v 86 (372)
T 1g29_1 9 VWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86 (372)
T ss_dssp EEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEE
T ss_pred EEEEECCE--EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEE
Confidence 45567653 489999998766 9999999999999999999999864 111 011000 011223444
Q ss_pred CCCccccCCceeEeecCCCCCCccccccc-ch------hhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccC
Q 009050 242 GVDDRSIPGNTVAVQADMPFSGLTTFGTA-FL------SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 242 ~~~~~~~~g~t~~~~~~~~~~gl~~~~~~-~~------~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~ 309 (545)
+|+....+..|+ .++. |. .+.+......++++.+.+-+ .|+.+| |++||++
T Consensus 87 ~Q~~~l~~~ltv-------------~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva---- 149 (372)
T 1g29_1 87 FQSYALYPHMTV-------------YDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVA---- 149 (372)
T ss_dssp CSCCCCCTTSCH-------------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHH----
T ss_pred eCCCccCCCCCH-------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHH----
Confidence 444333333332 2221 10 11112233455666666644 577888 8999999
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
+|++++.+|+++|+ .+|+. ...++.++++.+.+ .+.++++|.|.
T Consensus 150 ---lArAL~~~P~lLLLDEP~s~LD~~---~r~~l~~~l~~l~~~~g~tvi~vTHd 199 (372)
T 1g29_1 150 ---LGRAIVRKPQVFLMDEPLSNLDAK---LRVRMRAELKKLQRQLGVTTIYVTHD 199 (372)
T ss_dssp ---HHHHHHTCCSEEEEECTTTTSCHH---HHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred ---HHHHHhcCCCEEEECCCCccCCHH---HHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 89999999999998 45554 25666777777754 47889999883
No 210
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.25 E-value=4.5e-11 Score=112.58 Aligned_cols=147 Identities=20% Similarity=0.247 Sum_probs=84.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCccc-ceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTD-RFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~-r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+|+|++|||||||+|+|+|..+ ... ..|+.+ ..... ...+.|. .
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~--~~~-~~~t~~~~~~~~------------------~i~~~g~-----~------ 53 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEF--NLE-SKSTIGVEFATR------------------SIQVDGK-----T------ 53 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC--CC----CCCSCEEEEE------------------EEEETTE-----E------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC--CCC-CCCccceeEEEE------------------EEEECCE-----E------
Confidence 4799999999999999999999875 221 222211 11100 0001110 0
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKI 353 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~i 353 (545)
..+.++||||... . . .+...+...+|.+++++|............++..+. ..+.++
T Consensus 54 ---------~~~~i~Dt~g~~~---~--~------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i 113 (199)
T 2f9l_A 54 ---------IKAQIWDTAGQER---Y--R------RITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVI 113 (199)
T ss_dssp ---------EEEEEEECSSGGG---T--T------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred ---------EEEEEEECCCchh---h--h------hhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeE
Confidence 1567899999631 1 1 122345678999999999986322223334454443 346799
Q ss_pred EEEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+..+. .....++. + .+.+..+.+||+++.++++
T Consensus 114 ~~v~nK~Dl~~~~~~~~~~a~~l~----~---~~~~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 114 MLVGNKSDLRHLRAVPTDEARAFA----E---KNNLSFIETSALDSTNVEE 157 (199)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHH----H---HTTCEEEECCTTTCTTHHH
T ss_pred EEEEECcccccccCcCHHHHHHHH----H---HcCCeEEEEeCCCCCCHHH
Confidence 999999998642110 01111221 1 1233446799999988764
No 211
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.24 E-value=2.7e-12 Score=127.28 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=96.8
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc---ccceEEEEeCCCc-cccCCceeEeec
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT---TDRFVVVMSGVDD-RSIPGNTVAVQA 257 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~---t~r~~i~~~~~~~-~~~~g~t~~~~~ 257 (545)
.++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+. ..+..+.+.++++ ...+..|+..+.
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl 100 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEV 100 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHH
Confidence 479999988876 9999999999999999999998754 111 111110 0122344444432 122222221110
Q ss_pred CCCCCCcccccccchhhhhhhcCchhhccCceee--c----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE----
Q 009050 258 DMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV--D----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL---- 326 (545)
Q Consensus 258 ~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li--D----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl---- 326 (545)
.+..... ...........++++.+.+. + .|+.+| |++||+. +|++++.+|+++|+
T Consensus 101 ~~~~~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~-------lAraL~~~p~lllLDEPt 166 (266)
T 2yz2_A 101 AFAVKNF-------YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVA-------IASVIVHEPDILILDEPL 166 (266)
T ss_dssp HHTTTTT-------CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHH-------HHHHHTTCCSEEEEESTT
T ss_pred HHHHHhc-------CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEcCcc
Confidence 0000000 00001111233455555554 3 467788 8999998 89999999999998
Q ss_pred -EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCC
Q 009050 327 -LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (545)
Q Consensus 327 -vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~ 363 (545)
.+|+.. ...+.+++..+.+.+..++++.|..+.+
T Consensus 167 s~LD~~~---~~~l~~~l~~l~~~g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 167 VGLDREG---KTDLLRIVEKWKTLGKTVILISHDIETV 201 (266)
T ss_dssp TTCCHHH---HHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred ccCCHHH---HHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 566543 5667788888865588999999976654
No 212
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.23 E-value=1.2e-12 Score=130.69 Aligned_cols=173 Identities=17% Similarity=0.137 Sum_probs=100.1
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc--------cceEEEEeC
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT--------DRFVVVMSG 242 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t--------~r~~i~~~~ 242 (545)
.+++.|+. ..++++++|+..+ +++|+|+||||||||+|.|+|...| |.+ +...+.+ .+..+.+.+
T Consensus 26 ~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~ 103 (279)
T 2ihy_A 26 QIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVS 103 (279)
T ss_dssp EEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEEC
T ss_pred eEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEE
Confidence 35557765 3489999998776 9999999999999999999998864 111 1111100 112234444
Q ss_pred CCccccC--CceeEeecCCCCCCc-ccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHH
Q 009050 243 VDDRSIP--GNTVAVQADMPFSGL-TTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVT 314 (545)
Q Consensus 243 ~~~~~~~--g~t~~~~~~~~~~gl-~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia 314 (545)
++..... ..|+..+..+..... ...+. ..........++++.+.+.+ .|+.+| |++||+. +|
T Consensus 104 Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~-------lA 173 (279)
T 2ihy_A 104 HSLLEKFQEGERVIDVVISGAFKSIGVYQD---IDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM-------IA 173 (279)
T ss_dssp HHHHTTSCTTSBHHHHHHTTC------------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH-------HH
T ss_pred cCcccccCCCCCHHHHHHhhhhhccccccC---CcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HH
Confidence 4322111 112211100000000 00000 00011122344555555543 467778 8999998 89
Q ss_pred HHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeE--EEEecCCCCC
Q 009050 315 SWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKI--RVVLNKADQV 363 (545)
Q Consensus 315 ~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~i--iiVlNK~D~~ 363 (545)
++++.+|+++|+ .+|+.. ...+.+++..+.+.+..+ +++.+..+.+
T Consensus 174 raL~~~p~lLlLDEPts~LD~~~---~~~l~~~l~~l~~~g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 174 RALMGQPQVLILDEPAAGLDFIA---RESLLSILDSLSDSYPTLAMIYVTHFIEEI 226 (279)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHH---HHHHHHHHHHHHHHCTTCEEEEEESCGGGC
T ss_pred HHHhCCCCEEEEeCCccccCHHH---HHHHHHHHHHHHHCCCEEEEEEEecCHHHH
Confidence 999999999998 555542 456677787776557788 8998865543
No 213
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.23 E-value=1.9e-11 Score=128.82 Aligned_cols=105 Identities=20% Similarity=0.218 Sum_probs=58.1
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCc-cHHHHHHHHHHhcCC-CeEEEEecCCCCC
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDI-SDEFKRVITSLRGHD-DKIRVVLNKADQV 363 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~-~~~~~~~l~~L~~~~-~~iiiVlNK~D~~ 363 (545)
..+.|+||||... |.......+..+|++|+++|++. +. ..+..+.+..+...+ .++++|+||+|+.
T Consensus 81 ~~i~iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~-g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 81 RRVSFVDSPGHET-----------LMATMLSGASLMDGAILVIAANE-PCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp EEEEEEECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTS-CSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred cEEEEEECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCC-CCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 3789999999621 11122334678899999999986 33 455555555554444 4799999999998
Q ss_pred CHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 364 DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 364 ~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+.+.....+..+...+... ....++.+++||++|.|+++
T Consensus 149 ~~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi~~ 187 (408)
T 1s0u_A 149 DEKQAEENYEQIKEFVKGT-IAENAPIIPISAHHEANIDV 187 (408)
T ss_dssp CTTTTTTHHHHHHHHHTTS-TTTTCCEEEC------CHHH
T ss_pred CHHHHHHHHHHHHHHHhhc-CCCCCeEEEeeCCCCCCHHH
Confidence 6432211222221111221 12234458999999998764
No 214
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.23 E-value=3.8e-12 Score=124.26 Aligned_cols=160 Identities=20% Similarity=0.278 Sum_probs=94.7
Q ss_pred eeEEeCCcccCcccccccccCc-eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC----cccceEEEEeCCCcccc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP----TTDRFVVVMSGVDDRSI 248 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~-~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p----~t~r~~i~~~~~~~~~~ 248 (545)
+++.|+. .+++++|+..+ +++|+|+||||||||++.|+|...| |.+ +.+.+ ...+..+.+.+++....
T Consensus 7 l~~~y~~----~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~ 82 (240)
T 2onk_A 7 AEKRLGN----FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALF 82 (240)
T ss_dssp EEEEETT----EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCC
T ss_pred EEEEeCC----EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccC
Confidence 3446654 48888887666 9999999999999999999998854 110 00000 00111222233322222
Q ss_pred CCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCE
Q 009050 249 PGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDL 323 (545)
Q Consensus 249 ~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDl 323 (545)
++.|+..+..+.. ...+ .........++++.+.+.+ .|+.+| |++||+. +|++++.+|++
T Consensus 83 ~~ltv~enl~~~~---~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~-------lAral~~~p~l 147 (240)
T 2onk_A 83 PHLSVYRNIAYGL---RNVE-----RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVA-------LARALVIQPRL 147 (240)
T ss_dssp TTSCHHHHHHTTC---TTSC-----HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHH-------HHHHHTTCCSS
T ss_pred CCCcHHHHHHHHH---HHcC-----CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHH-------HHHHHHcCCCE
Confidence 2222211100000 0000 0011223445666666644 467788 8999998 89999999999
Q ss_pred EEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEec
Q 009050 324 ILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLN 358 (545)
Q Consensus 324 iLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlN 358 (545)
+|+ .+|+.. ...+.+++..+.+ .+..++++.|
T Consensus 148 llLDEPts~LD~~~---~~~~~~~l~~l~~~~g~tvi~vtH 185 (240)
T 2onk_A 148 LLLDEPLSAVDLKT---KGVLMEELRFVQREFDVPILHVTH 185 (240)
T ss_dssp BEEESTTSSCCHHH---HHHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEeCCcccCCHHH---HHHHHHHHHHHHHhcCCEEEEEeC
Confidence 998 566543 4667778877754 4788898888
No 215
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.22 E-value=1.3e-11 Score=137.62 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=92.3
Q ss_pred ccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchh
Q 009050 195 DAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLS 273 (545)
Q Consensus 195 ~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~ 273 (545)
.....|+|+|++|+|||||+++|++...+-...+. . .....+ ..........|.++.... .+.+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~-V-~~g~~~-~d~~~~e~~~giti~~~~~~~~~~~---------- 73 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGR-V-EEGTTT-TDYTPEAKLHRTTVRTGVAPLLFRG---------- 73 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCC-G-GGTCCS-SCCSHHHHHTTSCCSCEEEEEEETT----------
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccce-e-cCCccc-ccCCHHHHhcCCeEEecceEEeeCC----------
Confidence 33458999999999999999999976631001110 0 000000 000000011222221110 000000
Q ss_pred hhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeE
Q 009050 274 KFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKI 353 (545)
Q Consensus 274 ~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~i 353 (545)
..++|+||||... |...+...+..+|.+++++|+.. +.......+++.+...+.|+
T Consensus 74 ------------~~~nliDTpG~~~-----------f~~~~~~~l~~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~~ip~ 129 (665)
T 2dy1_A 74 ------------HRVFLLDAPGYGD-----------FVGEIRGALEAADAALVAVSAEA-GVQVGTERAWTVAERLGLPR 129 (665)
T ss_dssp ------------EEEEEEECCCSGG-----------GHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCE
T ss_pred ------------EEEEEEeCCCccc-----------hHHHHHHHHhhcCcEEEEEcCCc-ccchhHHHHHHHHHHccCCE
Confidence 2688999999843 22234556789999999999886 56777778888888788999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeec
Q 009050 354 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGS 395 (545)
Q Consensus 354 iiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa 395 (545)
++|+||+|+. ....++...+...++. .....+++|+
T Consensus 130 ilv~NKiD~~--~~~~~~~~~l~~~l~~----~~~~~~Pi~~ 165 (665)
T 2dy1_A 130 MVVVTKLDKG--GDYYALLEDLRSTLGP----ILPIDLPLYE 165 (665)
T ss_dssp EEEEECGGGC--CCHHHHHHHHHHHHCS----EEECEEEEEE
T ss_pred EEEecCCchh--hhHHHHHHHHHHHhCC----cceEEeeecC
Confidence 9999999987 2334444444333441 1122367777
No 216
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.22 E-value=1.4e-12 Score=128.18 Aligned_cols=163 Identities=18% Similarity=0.168 Sum_probs=93.6
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcc--cCCCCCCCCCCcccceEEEEeCCCccc-----
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRT--SYPGAHIGPEPTTDRFVVVMSGVDDRS----- 247 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~--~~p~~~v~~~p~t~r~~i~~~~~~~~~----- 247 (545)
+++.|+. ..++++++|+..+ +++|+|+||||||||++.|+|. ..| . ...+...+.....
T Consensus 9 l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~-------~G~I~~~g~~~~~~~~~~ 76 (250)
T 2d2e_A 9 LWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---E-------RGEILLDGENILELSPDE 76 (250)
T ss_dssp EEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---E-------EEEEEETTEECTTSCHHH
T ss_pred EEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---C-------ceEEEECCEECCCCCHHH
Confidence 4556765 3489999998776 9999999999999999999997 211 1 1111111111000
Q ss_pred --cCCceeEeecCCCCCCcccccccchh----------hhhhhcCchhhccCcee----ec-CCCC-CC-hhhhhhhhcc
Q 009050 248 --IPGNTVAVQADMPFSGLTTFGTAFLS----------KFECSQMPHSLLEHITL----VD-TPGV-LS-GEKQRTQRAY 308 (545)
Q Consensus 248 --~~g~t~~~~~~~~~~gl~~~~~~~~~----------~~~~~~~~~~lL~~v~l----iD-TPG~-~s-gekq~v~~~~ 308 (545)
..+..+..+....+.++....+.... .........++++.+.+ .| .|+. +| |++||+.
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~--- 153 (250)
T 2d2e_A 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNE--- 153 (250)
T ss_dssp HHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHH---
T ss_pred HHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH---
Confidence 00111111211112222211111000 00111223345555555 23 4677 88 8999998
Q ss_pred ChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 309 DFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 309 ~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+|++++.+|+++|+ .+|+.. ...+.+++..+.+.+..++++.|..+
T Consensus 154 ----iAraL~~~p~lllLDEPts~LD~~~---~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 154 ----ILQLLVLEPTYAVLDETDSGLDIDA---LKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp ----HHHHHHHCCSEEEEECGGGTTCHHH---HHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred ----HHHHHHcCCCEEEEeCCCcCCCHHH---HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 89999999999998 566543 46677888888666788888888554
No 217
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.21 E-value=8.3e-12 Score=133.89 Aligned_cols=147 Identities=22% Similarity=0.303 Sum_probs=91.5
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~ 275 (545)
.+.|+++|++|+|||||+++|++..+ ..+.. +|.|..... .+.+.+
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v---~~~e~------------------~GIT~~i~~~~v~~~~------------ 50 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKV---ASGEA------------------GGITQHIGAYHVETEN------------ 50 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHH---SBTTB------------------CCCCCCSSCCCCCTTS------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCC---ccccC------------------CCeeEeEEEEEEEECC------------
Confidence 46899999999999999999998663 11111 222221100 011111
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
..++|+||||...-.. .....+..+|++++++|+++ +...+..+.+..+...+.|+++
T Consensus 51 ----------~~i~~iDTPGhe~f~~-----------~~~~~~~~aD~aILVVda~~-g~~~qT~e~l~~~~~~~vPiIV 108 (501)
T 1zo1_I 51 ----------GMITFLDTPGHAAFTS-----------MRARGAQATDIVVLVVAADD-GVMPQTIEAIQHAKAAQVPVVV 108 (501)
T ss_dssp ----------SCCCEECCCTTTCCTT-----------SBCSSSBSCSSEEEEEETTT-BSCTTTHHHHHHHHHTTCCEEE
T ss_pred ----------EEEEEEECCCcHHHHH-----------HHHHHHhhCCEEEEEeeccc-CccHHHHHHHHHHHhcCceEEE
Confidence 2789999999743111 11123688999999999986 4455556666667677889999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcc--ccc---CCccEEEEeeccCCCccCc
Q 009050 356 VLNKADQVDTQQLMRVYGALMWSLGK--VLN---TPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~~~l~k--~~~---~~~v~~v~iSa~~~~~~~~ 403 (545)
++||+|+.+.. ..++... +.. .+. ...++.+++||++|.|+++
T Consensus 109 viNKiDl~~~~-~~~v~~~----l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 109 AVNKIDKPEAD-PDRVKNE----LSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp EEECSSSSTTC-CCCTTCC----CCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred EEEeccccccC-HHHHHHH----HHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 99999997421 0011100 010 000 1135568999999999887
No 218
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.21 E-value=3.1e-11 Score=124.72 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=59.9
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCH
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDT 365 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~ 365 (545)
..+.|+||||+...+ ...+..+|++|+++|+... ++...+...+ .+.|+++|+||+|+.+.
T Consensus 172 ~~~iiiDTpGi~~~~--------------~~~~~~aD~vl~V~d~~~~---~~~~~l~~~~--~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 172 FDVILIETVGVGQSE--------------VAVANMVDTFVLLTLARTG---DQLQGIKKGV--LELADIVVVNKADGEHH 232 (355)
T ss_dssp CCEEEEEECSCSSHH--------------HHHHTTCSEEEEEEESSTT---CTTTTCCTTS--GGGCSEEEEECCCGGGH
T ss_pred CCEEEEeCCCCCcHH--------------HHHHHhCCEEEEEECCCCC---ccHHHHHHhH--hhcCCEEEEECCCCcCh
Confidence 478999999985422 1235899999999998752 1111111111 23588999999999865
Q ss_pred HHHHHHHHHHHHHhcccc---cCCccEEEEeeccCCCccCc
Q 009050 366 QQLMRVYGALMWSLGKVL---NTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 366 ~~l~~v~~~l~~~l~k~~---~~~~v~~v~iSa~~~~~~~~ 403 (545)
.+.......+...+.... ..-.++.+++||++|.|+++
T Consensus 233 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~ 273 (355)
T 3p32_A 233 KEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAE 273 (355)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHH
T ss_pred hHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHH
Confidence 544443333322211111 01123348999999999886
No 219
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.21 E-value=2.7e-12 Score=131.76 Aligned_cols=157 Identities=15% Similarity=0.275 Sum_probs=99.3
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc----ccceEEEEeCCCccc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT----TDRFVVVMSGVDDRS 247 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~----t~r~~i~~~~~~~~~ 247 (545)
+++.|+. . ++++++|+..+ +++|+|+||||||||+|.|+|...| |.+ +....- ..+..+.+.+|+...
T Consensus 7 l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l 83 (348)
T 3d31_A 7 LSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSL 83 (348)
T ss_dssp EEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCC
T ss_pred EEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCccc
Confidence 4456765 3 88999998876 9999999999999999999999864 110 011000 011223444444443
Q ss_pred cCCceeEeecCCCCCCcccccccch-hhh---hhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 248 IPGNTVAVQADMPFSGLTTFGTAFL-SKF---ECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 248 ~~g~t~~~~~~~~~~gl~~~~~~~~-~~~---~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
.+..|+ ..+..+ .+. .......++++.+.+-+ .|+.+| |++||++ +|++++
T Consensus 84 ~~~ltv-------------~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRva-------lAraL~ 143 (348)
T 3d31_A 84 FPHMNV-------------KKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVA-------LARALV 143 (348)
T ss_dssp CTTSCH-------------HHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHH-------HHHHTT
T ss_pred CCCCCH-------------HHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHHHHH
Confidence 333332 222111 000 00023345566665543 577788 8999999 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEecC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLNK 359 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlNK 359 (545)
.+|+++|+ .+|+. ...++.++++.+.+ .+.++++|.|.
T Consensus 144 ~~P~lLLLDEP~s~LD~~---~~~~l~~~l~~l~~~~g~tii~vTHd 187 (348)
T 3d31_A 144 TNPKILLLDEPLSALDPR---TQENAREMLSVLHKKNKLTVLHITHD 187 (348)
T ss_dssp SCCSEEEEESSSTTSCHH---HHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred cCCCEEEEECccccCCHH---HHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 99999998 45554 25667777877754 57889998883
No 220
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.20 E-value=1.3e-11 Score=124.72 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=40.2
Q ss_pred CCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCC
Q 009050 320 KCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDK 399 (545)
Q Consensus 320 ~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~ 399 (545)
++++++++.+++..++.....++++.+.. +.++++|+||+|+.+..++........ ...+..+. .+ +.+||+++
T Consensus 126 ra~~ll~ldePt~~~Ld~~~~~~l~~l~~-~~~iilV~~K~Dl~~~~e~~~~~~~~~-~~~~~~~~-~~--~e~Sa~~~- 199 (301)
T 2qnr_A 126 RVHCCFYFISPFGHGLKPLDVAFMKAIHN-KVNIVPVIAKADTLTLKERERLKKRIL-DEIEEHNI-KI--YHLPDAES- 199 (301)
T ss_dssp CCCEEEEEECSSSSSCCHHHHHHHHHHTT-TSCEEEEECCGGGSCHHHHHHHHHHHH-HHHHHTTC-CC--CCCC-----
T ss_pred hhhheeeeecCcccCCCHHHHHHHHHHHh-cCCEEEEEEeCCCCCHHHHHHHHHHHH-HHHHHcCC-eE--EecCCccc-
Confidence 34567777776542344544577777754 568999999999987655432222211 11111121 23 67899998
Q ss_pred ccCc
Q 009050 400 PVNE 403 (545)
Q Consensus 400 ~~~~ 403 (545)
++++
T Consensus 200 ~v~e 203 (301)
T 2qnr_A 200 DEDE 203 (301)
T ss_dssp ----
T ss_pred cccH
Confidence 8775
No 221
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.20 E-value=4.7e-11 Score=116.81 Aligned_cols=166 Identities=21% Similarity=0.347 Sum_probs=93.9
Q ss_pred eeEEe-CCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC------cccceEEEEeCCC
Q 009050 177 VTYRF-NDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP------TTDRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~-~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p------~t~r~~i~~~~~~ 244 (545)
+++.| +. ..++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+ ...+..+.+.+++
T Consensus 7 l~~~y~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 84 (243)
T 1mv5_A 7 VDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQD 84 (243)
T ss_dssp EEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCS
T ss_pred EEEEeCCC--CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCC
Confidence 44566 33 3589999998877 9999999999999999999999854 111 01100 1112223344444
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCc-----eeec-CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI-----TLVD-TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v-----~liD-TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
....++ |+..+..+.... ......+..........+++..+ ..++ .++.+| |++||+. +|+++
T Consensus 85 ~~l~~~-tv~enl~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~-------lAral 154 (243)
T 1mv5_A 85 SAIMAG-TIRENLTYGLEG--DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA-------IARAF 154 (243)
T ss_dssp SCCCCE-EHHHHTTSCTTS--CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH-------HHHHH
T ss_pred Cccccc-cHHHHHhhhccC--CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHH-------HHHHH
Confidence 333332 221111111000 00000000000000001111111 1122 345677 8999998 89999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
+.+|+++|+ .+|+.. ...+.+++..+. .+..++++.|
T Consensus 155 ~~~p~lllLDEPts~LD~~~---~~~i~~~l~~~~-~~~tvi~vtH 196 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSES---ESMVQKALDSLM-KGRTTLVIAH 196 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSS---CCHHHHHHHHHH-TTSEEEEECC
T ss_pred hcCCCEEEEECCcccCCHHH---HHHHHHHHHHhc-CCCEEEEEeC
Confidence 999999999 678764 567778888887 4778888877
No 222
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=2.9e-11 Score=125.20 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=42.7
Q ss_pred CCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCc
Q 009050 321 CDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKP 400 (545)
Q Consensus 321 aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~ 400 (545)
++++++++|+....+......+++.+. .+.|+++|+||+|+.+..++......+... .+..+ +..+++||+++.+
T Consensus 146 v~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~-~~~~~---i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 146 VHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDE-IEEHN---IKIYHLPDAESDE 220 (361)
T ss_dssp CCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHHHHHHHHHH-TTCC----CCSCCCC------
T ss_pred eEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HHHCC---CCEEeCCCcCCCc
Confidence 467888888743345565567777764 568999999999999876665433333211 22222 2236899998876
No 223
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.19 E-value=9.7e-11 Score=116.31 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=46.4
Q ss_pred hcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHH
Q 009050 318 AAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALM 376 (545)
Q Consensus 318 ~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~ 376 (545)
+.++.+.++++|+...++...+.++++.+.+. .++++|+||+|.+..+++......+.
T Consensus 109 iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~~k~~i~ 166 (270)
T 3sop_A 109 DTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSEFKQRVR 166 (270)
T ss_dssp CCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred hheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHHHHHHHH
Confidence 45678889999976546778888999999887 99999999999999877766555443
No 224
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.18 E-value=2.7e-12 Score=127.44 Aligned_cols=174 Identities=18% Similarity=0.261 Sum_probs=97.8
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHccc-C-C--CCC-CCCCCcc-----c--ceEEEEe
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS-Y-P--GAH-IGPEPTT-----D--RFVVVMS 241 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~-~-p--~~~-v~~~p~t-----~--r~~i~~~ 241 (545)
.+++.|+. ..++++++|+..+ +++|+|+||||||||+|.|+|.. . | |.+ +...+.+ . +..+.+.
T Consensus 25 ~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 102 (267)
T 2zu0_C 25 DLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMA 102 (267)
T ss_dssp EEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEE
T ss_pred eEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEE
Confidence 35557765 3489999998876 99999999999999999999974 1 1 111 1111100 0 1123344
Q ss_pred CCCccccCCceeEeecCCCCCCccc-ccccchhhhhhhcCchhhccCceee----c-CCC-CCC-hhhhhhhhccChHHH
Q 009050 242 GVDDRSIPGNTVAVQADMPFSGLTT-FGTAFLSKFECSQMPHSLLEHITLV----D-TPG-VLS-GEKQRTQRAYDFTGV 313 (545)
Q Consensus 242 ~~~~~~~~g~t~~~~~~~~~~gl~~-~~~~~~~~~~~~~~~~~lL~~v~li----D-TPG-~~s-gekq~v~~~~~~~~i 313 (545)
+++....++.++..........+.. .+..............++++.+.+. | .|+ .+| |++||+. +
T Consensus 103 ~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~-------i 175 (267)
T 2zu0_C 103 FQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND-------I 175 (267)
T ss_dssp CSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH-------H
T ss_pred ccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH-------H
Confidence 4444333333321000000000000 0000000011112334555555553 3 345 378 8999999 8
Q ss_pred HHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 314 TSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 314 a~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
|++++.+|+++|+ .+|+.. ...+.+++..+++.+..++++.+..+
T Consensus 176 AraL~~~p~lLlLDEPts~LD~~~---~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGLDIDA---LKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHH---HHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHH---HHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 9999999999998 455542 45666777777656778888888544
No 225
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.18 E-value=1.3e-11 Score=121.11 Aligned_cols=170 Identities=16% Similarity=0.250 Sum_probs=96.3
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc------ccceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT------TDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~------t~r~~i~~~~~~~ 245 (545)
+++.|......++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+. ..+..+.+.+++.
T Consensus 13 l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~ 92 (247)
T 2ff7_A 13 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDN 92 (247)
T ss_dssp EEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred EEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCC
Confidence 4556721013489999998876 9999999999999999999999864 111 111111 1123455666655
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCc-----eeec-CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI-----TLVD-TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v-----~liD-TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
...++ |+..+..+..... ....+..........+++..+ ..++ .++.+| |++||+. +|++++
T Consensus 93 ~l~~~-tv~enl~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~-------iAraL~ 161 (247)
T 2ff7_A 93 VLLNR-SIIDNISLANPGM---SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIA-------IARALV 161 (247)
T ss_dssp CCTTS-BHHHHHTTTCTTC---CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHH-------HHHHHT
T ss_pred ccccc-cHHHHHhccCCCC---CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHH-------HHHHHh
Confidence 44443 3311111110000 000000000000011111111 1122 346777 8999999 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
.+|+++|+ .+|+.. ...+.+++..+. .+..++++.+..+
T Consensus 162 ~~p~lllLDEPts~LD~~~---~~~i~~~l~~~~-~g~tviivtH~~~ 205 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYES---EHVIMRNMHKIC-KGRTVIIIAHRLS 205 (247)
T ss_dssp TCCSEEEECCCCSCCCHHH---HHHHHHHHHHHH-TTSEEEEECSSGG
T ss_pred cCCCEEEEeCCcccCCHHH---HHHHHHHHHHHc-CCCEEEEEeCCHH
Confidence 99999998 555542 456777787775 4788888888544
No 226
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.17 E-value=7.5e-11 Score=110.52 Aligned_cols=149 Identities=19% Similarity=0.221 Sum_probs=84.7
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~ 276 (545)
...|+|+|++|||||||+|+|+|..++ . ...|+.+..... ....+.|. .
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~--~-~~~~t~~~~~~~-----------------~~i~~~g~-----~------ 77 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFN--L-ESKSTIGVEFAT-----------------RSIQVDGK-----T------ 77 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCC--C-SCCCCCSEEEEE-----------------EEEEETTE-----E------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC--C-CCCCccceEEEE-----------------EEEEECCE-----E------
Confidence 348999999999999999999998852 1 222222111100 00000110 0
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHh---cCCCeE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLR---GHDDKI 353 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~---~~~~~i 353 (545)
-.+.++||||...- +. ....+...++.+++++|.......+....++..+. ..+.++
T Consensus 78 ---------~~~~i~Dt~g~~~~------~~-----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i 137 (191)
T 1oix_A 78 ---------IKAQIWDTAGLERY------RA-----ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVI 137 (191)
T ss_dssp ---------EEEEEEEECSCCSS------SC-----CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred ---------EEEEEEECCCCcch------hh-----hhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 14567999997431 01 12344678999999999876321222334444443 346799
Q ss_pred EEEecCCCCCCHHHH-HHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 354 RVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 354 iiVlNK~D~~~~~~l-~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
++|+||+|+.+..+. .....++. . .+.+..+.+||+++.++++
T Consensus 138 ~~v~nK~Dl~~~~~~~~~~a~~l~----~---~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 138 MLVGNKSDLRHLRAVPTDEARAFA----E---KNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHH----H---HTTCEEEECCTTTCTTHHH
T ss_pred EEEEECcccccccccCHHHHHHHH----H---HcCCEEEEEeCCCCCCHHH
Confidence 999999998642110 01111221 1 1233446799999888664
No 227
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.15 E-value=1.8e-11 Score=121.63 Aligned_cols=169 Identities=17% Similarity=0.234 Sum_probs=96.0
Q ss_pred eeEEeCC-cccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCcc------cceEEEEeCCC
Q 009050 177 VTYRFND-FVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPTT------DRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~-~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~t------~r~~i~~~~~~ 244 (545)
+++.|+. ....++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +...+-+ .+..+.+.+++
T Consensus 22 l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~ 101 (271)
T 2ixe_A 22 VSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQE 101 (271)
T ss_dssp EEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSS
T ss_pred EEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecC
Confidence 4456653 113489999998876 9999999999999999999999864 111 1111111 12235566665
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCc--e---eec-CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI--T---LVD-TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v--~---liD-TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
....++ |+..+..+........ .............++++.+ . +.+ .|+.+| |++||+. +|+++
T Consensus 102 ~~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~-------lAraL 171 (271)
T 2ixe_A 102 PLLFGR-SFRENIAYGLTRTPTM--EEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVA-------LARAL 171 (271)
T ss_dssp CCCCSS-BHHHHHHTTCSSCCCH--HHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHH-------HHHHH
T ss_pred Cccccc-cHHHHHhhhcccCChH--HHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHH-------HHHHH
Confidence 544443 3311111111000000 0000000011122223222 1 123 567788 8999999 89999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhc-CCCeEEEEec
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRG-HDDKIRVVLN 358 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVlN 358 (545)
+.+|+++|+ .+|+.. ...+.+++..+.. .+..+++|.+
T Consensus 172 ~~~p~lllLDEPts~LD~~~---~~~i~~~l~~~~~~~g~tviivtH 215 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGN---QLRVQRLLYESPEWASRTVLLITQ 215 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHH---HHHHHHHHHHCTTTTTSEEEEECS
T ss_pred hcCCCEEEEECCccCCCHHH---HHHHHHHHHHHHhhcCCEEEEEeC
Confidence 999999998 455532 4556677777653 4678888877
No 228
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.14 E-value=4.8e-11 Score=137.04 Aligned_cols=161 Identities=20% Similarity=0.176 Sum_probs=87.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECS 278 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~ 278 (545)
.|+++|.+|+|||||+|+|++... ..+.. ...... .+.....+...|.|+.... ..+.. +.
T Consensus 298 nIvIIGhvDvGKSTLInrLt~~~~---~~G~a-~f~~~a-~lD~~~~ErerGITIdva~-v~f~~----~~--------- 358 (1289)
T 3avx_A 298 NVGTIGHVDHGKTTLTAAITTVLA---KTYGG-AARAFD-QIDNAPEEKARGITINTSH-VEYDT----PT--------- 358 (1289)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH---HHSCC-----------------------CCSC-EEEEC----SS---------
T ss_pred EEEEEcCCCCCHHHHHHHHHhhhc---ccccc-cccccc-ccccccccccCceeEEEEE-EEEcC----CC---------
Confidence 799999999999999999998521 00000 000000 0011111223455442110 00100 00
Q ss_pred cCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe-EEEEe
Q 009050 279 QMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVVL 357 (545)
Q Consensus 279 ~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~-iiiVl 357 (545)
..+.|+||||... |.......+..+|++|+++|++. +...+..+.+..+...+.| +++|+
T Consensus 359 -------~kI~IIDTPGHed-----------F~~~mi~gas~AD~aILVVDAtd-Gv~~QTrEhL~ll~~lgIP~IIVVI 419 (1289)
T 3avx_A 359 -------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVAATD-GPMPQTREHILLGRQVGVPYIIVFL 419 (1289)
T ss_dssp -------CEEEEEECCCHHH-----------HHHHHHHTSCCCSEEEEEEETTT-CSCTTHHHHHHHHHHHTCSCEEEEE
T ss_pred -------EEEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEcCCc-cCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 3789999999732 22234456789999999999987 4455566666666666778 78999
Q ss_pred cCCCCCCHHHH-HHHH---HHHHHHhcccccCCccEEEEeeccCCC
Q 009050 358 NKADQVDTQQL-MRVY---GALMWSLGKVLNTPEVVRVYIGSFNDK 399 (545)
Q Consensus 358 NK~D~~~~~~l-~~v~---~~l~~~l~k~~~~~~v~~v~iSa~~~~ 399 (545)
||+|+.+.++. ..+. ..+....+ +....++.+++||++|.
T Consensus 420 NKiDLv~d~e~le~i~eEi~elLk~~G--~~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 420 NKCDMVDDEELLELVEMEVRELLSQYD--FPGDDTPIVRGSALKAL 463 (1289)
T ss_dssp ECCTTCCCHHHHHHHHHHHHHHHHHTT--SCTTTCCEEECCSTTTT
T ss_pred eecccccchhhHHHHHHHHHHHHHhcc--ccccceeEEEEEeccCC
Confidence 99999863332 2222 22221121 11123455899999984
No 229
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.11 E-value=1.5e-10 Score=114.02 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=49.9
Q ss_pred CCCEEEEEeCCCCC--CccHHHHHHHHHHh----cCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEe
Q 009050 320 KCDLILLLFDPHKL--DISDEFKRVITSLR----GHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYI 393 (545)
Q Consensus 320 ~aDliLlvlD~~~~--~~~~~~~~~l~~L~----~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~i 393 (545)
++|++|+|+|.++. ...+....++..+. ..+.|+++|.||+|+.+...+.+. ..+ .+.. ..+..+.+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~-~~~----~~~~--~~~~~~e~ 234 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDA-HTF----ALSK--KNLQVVET 234 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHH-HHH----HHTS--SSCCEEEC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHH-HHH----HHhc--CCCeEEEE
Confidence 69999999999873 33444555555543 346899999999999875544222 112 1111 12233789
Q ss_pred eccCCCccCc
Q 009050 394 GSFNDKPVNE 403 (545)
Q Consensus 394 Sa~~~~~~~~ 403 (545)
||++|.|+++
T Consensus 235 SAk~g~gv~e 244 (255)
T 3c5h_A 235 SARSNVNVDL 244 (255)
T ss_dssp BTTTTBSHHH
T ss_pred ECCCCCCHHH
Confidence 9999999875
No 230
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.10 E-value=4.7e-11 Score=120.47 Aligned_cols=167 Identities=22% Similarity=0.262 Sum_probs=93.5
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC------cccceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP------TTDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p------~t~r~~i~~~~~~~ 245 (545)
+++.|... .+++++++|...+ +|+|+|++|||||||++.|+|...| |.+ +...+ ...+..+.+.+|++
T Consensus 59 vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~ 137 (306)
T 3nh6_A 59 VHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDT 137 (306)
T ss_dssp EEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSC
T ss_pred EEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCC
Confidence 45567432 3589999999877 9999999999999999999998854 111 11111 11233456666655
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccC-----ceeec-CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEH-----ITLVD-TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~-----v~liD-TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
...++ |+..+.. + +....+...+..........+.+.. -+.++ .+..+| |++||+. +||+++
T Consensus 138 ~lf~~-Tv~eNi~--~-~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRva-------iARAL~ 206 (306)
T 3nh6_A 138 VLFND-TIADNIR--Y-GRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVA-------IARTIL 206 (306)
T ss_dssp CCCSE-EHHHHHH--T-TSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHH-------HHHHHH
T ss_pred ccCcc-cHHHHHH--h-hcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHH-------HHHHHH
Confidence 44443 2211111 1 1000000000000000001111111 12233 334567 8999999 999999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
.+|+++|+ .+|+.. ...+.+.+..+.. +..+++|.|.
T Consensus 207 ~~p~iLlLDEPts~LD~~~---~~~i~~~l~~l~~-~~Tvi~itH~ 248 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSN---ERAIQASLAKVCA-NRTTIVVAHR 248 (306)
T ss_dssp HCCSEEEEECCSSCCCHHH---HHHHHHHHHHHHT-TSEEEEECCS
T ss_pred hCCCEEEEECCcccCCHHH---HHHHHHHHHHHcC-CCEEEEEEcC
Confidence 99999988 455432 3455666666654 5788888773
No 231
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.09 E-value=1.1e-10 Score=133.41 Aligned_cols=143 Identities=20% Similarity=0.213 Sum_probs=79.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKFE 276 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~~ 276 (545)
..|+|+|++|+|||||+|+|++... .+....+.++++. .....+..+|.|+.... .+.|..- . . ....
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g--~i~~~~~~~~~~~---D~~~~E~~rgiTI~~~~~~~~~~~~-~--~-~~~~-- 88 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAG--IISAAKAGEARFT---DTRKDEQERGITIKSTAISLYSEMS-D--E-DVKE-- 88 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHB--CCBC---------------------CCCBCCCEEEEEEECC-H--H-HHHH--
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC--CcccccCCCceee---cCchhhhhcceeEeeceeEEEeccc-c--c-cccc--
Confidence 3799999999999999999998753 3333333222221 11111223444431110 0111000 0 0 0000
Q ss_pred hhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 009050 277 CSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 277 ~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiV 356 (545)
.......--..++||||||... |...+..++..+|.+|+++|+.. +...+...++..+...+.|+++|
T Consensus 89 i~~~~~~~~~~i~liDTPG~~d-----------f~~~~~~~l~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~~~p~ilv 156 (842)
T 1n0u_A 89 IKQKTDGNSFLINLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDTIE-GVCVQTETVLRQALGERIKPVVV 156 (842)
T ss_dssp CSSCCCSSEEEEEEECCCCCCS-----------SCHHHHHHHHTCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccccCCCceEEEEECcCchh-----------hHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCeEEE
Confidence 0000000003789999999854 22245566789999999999987 55666667777766778999999
Q ss_pred ecCCCCC
Q 009050 357 LNKADQV 363 (545)
Q Consensus 357 lNK~D~~ 363 (545)
+||+|+.
T Consensus 157 iNK~D~~ 163 (842)
T 1n0u_A 157 INKVDRA 163 (842)
T ss_dssp EECHHHH
T ss_pred EECCCcc
Confidence 9999986
No 232
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.09 E-value=4.5e-10 Score=125.91 Aligned_cols=149 Identities=16% Similarity=0.158 Sum_probs=87.8
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeec-CCCCCCcccccccchhhh
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQA-DMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~-~~~~~gl~~~~~~~~~~~ 275 (545)
...|+|+|..|+|||||+++|+...- ... .....+.....+.....+...|.|+.... .+.+.+....+.
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g--~~~-~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~------ 80 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTG--VNH-KIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE------ 80 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcC--Ccc-cccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCC------
Confidence 34899999999999999999986431 111 00000000111111111223444442211 111211100000
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
-..++||||||... |...+...+..+|.+|+++|++. +.......++..+...+.|+++
T Consensus 81 ---------~~~i~liDTPG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~~ip~il 139 (704)
T 2rdo_7 81 ---------PHRINIIDTPGHVD-----------FTIEVERSMRVLDGAVMVYCAVG-GVQPQSETVWRQANKYKVPRIA 139 (704)
T ss_pred ---------ceeEEEEeCCCccc-----------hHHHHHHHHHHCCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCEEE
Confidence 03789999999853 22234556788999999999987 5566667777777777899999
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q 009050 356 VLNKADQVDTQQLMRVYGALM 376 (545)
Q Consensus 356 VlNK~D~~~~~~l~~v~~~l~ 376 (545)
|+||+|+... +..++...+.
T Consensus 140 viNKiD~~~~-~~~~~~~~l~ 159 (704)
T 2rdo_7 140 FVNKMDRMGA-NFLKVVNQIK 159 (704)
T ss_pred EEeCCCcccc-cHHHHHHHHH
Confidence 9999998753 2344444443
No 233
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.09 E-value=4.2e-11 Score=118.34 Aligned_cols=171 Identities=19% Similarity=0.292 Sum_probs=93.8
Q ss_pred eeeEEeCCcc-cCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC-CCC-CCCCCcc------cceEEEEeCCC
Q 009050 176 EVTYRFNDFV-SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP-GAH-IGPEPTT------DRFVVVMSGVD 244 (545)
Q Consensus 176 ~~~~~~~~~~-~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p-~~~-v~~~p~t------~r~~i~~~~~~ 244 (545)
.+++.|+... ..++++++|+..+ +++|+|+||||||||++.|+|...+ |.+ +...+-+ .+..+.+.+++
T Consensus 22 ~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 101 (260)
T 2ghi_A 22 DVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQD 101 (260)
T ss_dssp EEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSS
T ss_pred EEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCC
Confidence 3455665421 3589999998876 9999999999999999999998642 110 0111100 12234455554
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhh-hhhhcCchhhccCc-----eee-cCCCCCC-hhhhhhhhccChHHHHHH
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSK-FECSQMPHSLLEHI-----TLV-DTPGVLS-GEKQRTQRAYDFTGVTSW 316 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~-~~~~~~~~~lL~~v-----~li-DTPG~~s-gekq~v~~~~~~~~ia~~ 316 (545)
....++ |+..+.. +... ......... ..... ..+.+..+ +.+ ..++.+| |++||+. +|++
T Consensus 102 ~~l~~~-tv~enl~--~~~~-~~~~~~~~~~l~~~~-l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~-------lAra 169 (260)
T 2ghi_A 102 TILFNE-TIKYNIL--YGKL-DATDEEVIKATKSAQ-LYDFIEALPKKWDTIVGNKGMKLSGGERQRIA-------IARC 169 (260)
T ss_dssp CCCCSE-EHHHHHH--TTCT-TCCHHHHHHHHHHTT-CHHHHHTSTTGGGCEESSSSBCCCHHHHHHHH-------HHHH
T ss_pred Cccccc-CHHHHHh--ccCC-CCCHHHHHHHHHHhC-CHHHHHhccccccccccCCcCcCCHHHHHHHH-------HHHH
Confidence 433332 2211111 1000 000000000 00000 00111010 012 2456778 8999998 8999
Q ss_pred HhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCC
Q 009050 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQ 362 (545)
Q Consensus 317 ~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~ 362 (545)
++.+|+++|+ .+|+.. ...+.+++..+.+ +..++++.|..+.
T Consensus 170 L~~~p~lllLDEPts~LD~~~---~~~i~~~l~~l~~-~~tviivtH~~~~ 216 (260)
T 2ghi_A 170 LLKDPKIVIFDEATSSLDSKT---EYLFQKAVEDLRK-NRTLIIIAHRLST 216 (260)
T ss_dssp HHHCCSEEEEECCCCTTCHHH---HHHHHHHHHHHTT-TSEEEEECSSGGG
T ss_pred HHcCCCEEEEECccccCCHHH---HHHHHHHHHHhcC-CCEEEEEcCCHHH
Confidence 9999999998 455532 4566677777765 6788888885543
No 234
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.07 E-value=6.2e-11 Score=116.26 Aligned_cols=151 Identities=16% Similarity=0.199 Sum_probs=91.6
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC-CCC-CCCCCcc------cceEEEEeCCCccccCCceeEee
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP-GAH-IGPEPTT------DRFVVVMSGVDDRSIPGNTVAVQ 256 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p-~~~-v~~~p~t------~r~~i~~~~~~~~~~~g~t~~~~ 256 (545)
.++++++|+..+ +++|+|+||||||||++.|+|...| |.+ +.+.+.+ .+..+.+.+++....++.|+..+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 478898888766 9999999999999999999998743 110 0011100 01224444554433333333111
Q ss_pred cCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCC-------EE
Q 009050 257 ADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD-------LI 324 (545)
Q Consensus 257 ~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aD-------li 324 (545)
..+. ... .. ......++++.+.+.+ .|+.+| |++||+. +|++++.+|+ ++
T Consensus 94 l~~~--~~~--------~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~-------lAraL~~~p~~~~~~~~ll 155 (249)
T 2qi9_C 94 LTLH--QHD--------KT-RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVR-------LAAVVLQITPQANPAGQLL 155 (249)
T ss_dssp HHTT--CSS--------TT-CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHH-------HHHHHHHHCTTTCTTCCEE
T ss_pred HHHh--hcc--------CC-cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHHHHHcCCCcCCCCCeEE
Confidence 1100 000 00 0112233444554433 466777 8999998 8999999999 88
Q ss_pred EE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEec
Q 009050 325 LL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLN 358 (545)
Q Consensus 325 Ll-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlN 358 (545)
|+ .+|+.. ...+.+++..+.+.+..++++.|
T Consensus 156 lLDEPts~LD~~~---~~~l~~~l~~l~~~g~tviivtH 191 (249)
T 2qi9_C 156 LLDEPMNSLDVAQ---QSALDKILSALSQQGLAIVMSSH 191 (249)
T ss_dssp EESSTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEECCcccCCHHH---HHHHHHHHHHHHhCCCEEEEEeC
Confidence 88 555542 46677788888655778888877
No 235
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.06 E-value=1.6e-09 Score=109.70 Aligned_cols=71 Identities=13% Similarity=0.254 Sum_probs=47.0
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHH---HHHHHHh--cCCCeEEEEecCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFK---RVITSLR--GHDDKIRVVLNKAD 361 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~---~~l~~L~--~~~~~iiiVlNK~D 361 (545)
.+.+|||||.-. -+ +.+ + ....+.++++++|+|+|.++. ..+... +++..+. ..+.|+++|.||+|
T Consensus 47 ~LqIWDTAGQEr---f~--~~~-l--~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~D 117 (331)
T 3r7w_B 47 DLAVMELPGQLN---YF--EPS-Y--DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117 (331)
T ss_dssp CEEEEECCSCSS---SC--CCS-H--HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCC
T ss_pred EEEEEECCCchh---cc--chh-h--hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcc
Confidence 789999999832 11 000 0 234567999999999999873 223222 2344332 24679999999999
Q ss_pred CCCHH
Q 009050 362 QVDTQ 366 (545)
Q Consensus 362 ~~~~~ 366 (545)
+.+.+
T Consensus 118 L~~~~ 122 (331)
T 3r7w_B 118 GLSED 122 (331)
T ss_dssp SSCSH
T ss_pred cCchh
Confidence 98654
No 236
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.05 E-value=1.9e-10 Score=119.81 Aligned_cols=161 Identities=21% Similarity=0.265 Sum_probs=94.2
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC-------CCCCCCCCc-ccceEEEEeCCCc
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP-------GAHIGPEPT-TDRFVVVMSGVDD 245 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p-------~~~v~~~p~-t~r~~i~~~~~~~ 245 (545)
.+++.|..-...++++++|+..+ +++|+||+|||||||+++|+|.... |..+...+. ..+..+.+.+|+.
T Consensus 24 ~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~ 103 (390)
T 3gd7_A 24 DLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKV 103 (390)
T ss_dssp EEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCC
T ss_pred EEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCc
Confidence 34556732224589999999876 9999999999999999999997521 111111111 1123456666665
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceeec----CCCC-----------CC-hhhhhhhhccC
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGV-----------LS-GEKQRTQRAYD 309 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~-----------~s-gekq~v~~~~~ 309 (545)
...++ |+..+ ..+.+.. ......++++.+.+.+ .|+. +| |++||++
T Consensus 104 ~lf~~-tv~en--l~~~~~~-----------~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRva---- 165 (390)
T 3gd7_A 104 FIFSG-TFRKN--LDPNAAH-----------SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMC---- 165 (390)
T ss_dssp CCCSE-EHHHH--HCTTCCS-----------CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHH----
T ss_pred ccCcc-CHHHH--hhhcccc-----------CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHH----
Confidence 55442 22111 1000000 0011112222333221 3443 77 8999999
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+|++++.+|+++|+ .+|+.. ..++...++.+. .+..+++|.|..+
T Consensus 166 ---lARAL~~~P~lLLLDEPts~LD~~~---~~~l~~~l~~~~-~~~tvi~vtHd~e 215 (390)
T 3gd7_A 166 ---LARSVLSKAKILLLDEPSAHLDPVT---YQIIRRTLKQAF-ADCTVILCEARIE 215 (390)
T ss_dssp ---HHHHHHTTCCEEEEESHHHHSCHHH---HHHHHHHHHTTT-TTSCEEEECSSSG
T ss_pred ---HHHHHhcCCCEEEEeCCccCCCHHH---HHHHHHHHHHHh-CCCEEEEEEcCHH
Confidence 99999999999998 577642 455556665543 3567888777543
No 237
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.04 E-value=1.1e-10 Score=113.19 Aligned_cols=134 Identities=16% Similarity=0.199 Sum_probs=74.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVA 254 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~ 254 (545)
+++.|+....+++++++|+..+ +++|+|+||||||||++.|+|...| .++...... .+.+.+++....++ |+.
T Consensus 12 l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g-~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 12 VTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG-RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp EEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEECS-CEEEECSSCCCCSB-CHH
T ss_pred EEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CccEEEECC-EEEEEecCCcccCC-CHH
Confidence 4456642124589999998876 9999999999999999999998743 221111111 24555555544443 331
Q ss_pred eecCCCCCCcccccccchhhhhhhcCchhhccCce-----ee-cCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE
Q 009050 255 VQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHIT-----LV-DTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (545)
Q Consensus 255 ~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~-----li-DTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl 326 (545)
.+..+. ....... ...........+.+..+. .+ +.++.+| |++||+. +|++++.+|+++|+
T Consensus 87 enl~~~---~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~-------lAral~~~p~lllL 154 (229)
T 2pze_A 87 ENIIFG---VSYDEYR-YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS-------LARAVYKDADLYLL 154 (229)
T ss_dssp HHHHTT---SCCCHHH-HHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHH-------HHHHHHSCCSEEEE
T ss_pred HHhhcc---CCcChHH-HHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHH-------HHHHHhcCCCEEEE
Confidence 111110 0000000 000000001111222211 11 2346778 8999998 89999999999988
No 238
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.03 E-value=3.7e-10 Score=116.83 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=58.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccce-EEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRF-VVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~-~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+|+|.||||||||+|+|++.. ..+++.|.+|.. ++... . .++.. +.....
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~---~~v~~~p~~Ti~pn~g~~-~----v~~~~-------------------l~~~~~ 55 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN---ALAANYPFATIDKNVGVV-P----LEDER-------------------LYALQR 55 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH---TTCSSCCGGGGSTTEEEE-E----CCCHH-------------------HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CcccCCCCceeccceeeE-e----cChHH-------------------HHHHHH
Confidence 58999999999999999999986 456666655432 22110 0 00000 000000
Q ss_pred hcCchh-----hccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCC
Q 009050 278 SQMPHS-----LLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK 332 (545)
Q Consensus 278 ~~~~~~-----lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~ 332 (545)
...+.. .-..+.|+||||+..+..+. +++.. .....++++|++++|+|+..
T Consensus 56 ~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~~--~~lg~--~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 56 TFAKGERVPPVVPTHVEFVDIAGLVKGAHKG--EGLGN--QFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp HHCBTTBCCCEECCEEEEEECCSCCCCCCSS--SCTTH--HHHHHHHTCSEEEEEEECCC
T ss_pred HhcccccccccCCceEEEEECCCcccccccc--chHHH--HHHHHHHhCCEEEEEEECCC
Confidence 000000 01368999999998642211 11110 12234789999999999974
No 239
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.03 E-value=4.5e-11 Score=124.12 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=83.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHcc-----cCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccc
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRT-----SYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAF 271 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~-----~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~ 271 (545)
+..|+++|.+|+|||||+|+|+|. .. ..+++.|.||+...... + +
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~--~~~~~~~gtT~~~~~~~-------------------~------~--- 211 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNV--ITTSYFPGTTLDMIEIP-------------------L------E--- 211 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCC--CEEEECTTSSCEEEEEE-------------------C------S---
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccc--eeecCCCCeEEeeEEEE-------------------e------C---
Confidence 347999999999999999999998 33 55666666665443211 0 0
Q ss_pred hhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHH-hcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCC
Q 009050 272 LSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWF-AAKCDLILLLFDPHKLDISDEFKRVITSLRGHD 350 (545)
Q Consensus 272 ~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~-~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~ 350 (545)
..+.++||||+.+..+ ....+....+...+ -.+.|.+++++|+...-... ....++.+...+
T Consensus 212 --------------~~~~liDtPG~~~~~~--~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g-~l~~l~~l~~~~ 274 (369)
T 3ec1_A 212 --------------SGATLYDTPGIINHHQ--MAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFG-GLARLDYIKGGR 274 (369)
T ss_dssp --------------TTCEEEECCSCCCCSS--GGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEET-TTEEEEEEESSS
T ss_pred --------------CCeEEEeCCCcCcHHH--HHHHHhHHHHHHHhcccccCceEEEEcCCceEEEC-CEEEEEEccCCC
Confidence 2578999999986321 11111111121111 27889999999994310001 111244456667
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHHhcc
Q 009050 351 DKIRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (545)
Q Consensus 351 ~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k 381 (545)
.++++++||+|.+...++....+.+...+|.
T Consensus 275 ~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 275 RSFVCYMANELTVHRTKLEKADSLYANQLGE 305 (369)
T ss_dssp EEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred ceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence 8999999999998654444444444334443
No 240
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.02 E-value=6.8e-11 Score=122.70 Aligned_cols=139 Identities=13% Similarity=0.147 Sum_probs=81.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCC----CCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYP----GAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLS 273 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p----~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~ 273 (545)
..|+++|.+|+|||||+|+|+|...- ...++..|.||+...... + +
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~-------------------~------~----- 210 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP-------------------L------D----- 210 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE-------------------S------S-----
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE-------------------e------c-----
Confidence 47999999999999999999997520 023455555554432210 0 0
Q ss_pred hhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHH-hcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe
Q 009050 274 KFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWF-AAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK 352 (545)
Q Consensus 274 ~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~-~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ 352 (545)
..+.++||||+.+..+ ....+....+...+ ..+.+.+++++|+...-... ....++.+...+.|
T Consensus 211 ------------~~~~liDtPG~~~~~~--~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g-~l~~~d~l~~~~~~ 275 (368)
T 3h2y_A 211 ------------EESSLYDTPGIINHHQ--MAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFS-GLARFDYVSGGRRA 275 (368)
T ss_dssp ------------SSCEEEECCCBCCTTS--GGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEET-TTEEEEEEESSSEE
T ss_pred ------------CCeEEEeCCCcCcHHH--HHHHhhHHHHHHhccccccCceEEEEcCCCEEEEc-ceEEEEEecCCCce
Confidence 2578999999987421 11112222122222 47888999999984310011 11224445666789
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcc
Q 009050 353 IRVVLNKADQVDTQQLMRVYGALMWSLGK 381 (545)
Q Consensus 353 iiiVlNK~D~~~~~~l~~v~~~l~~~l~k 381 (545)
+++++||+|.+...++....+.+...+|.
T Consensus 276 ~~~v~nk~d~~~~~~~~~~~~~~~~~~g~ 304 (368)
T 3h2y_A 276 FTCHFSNRLTIHRTKLEKADELYKNHAGD 304 (368)
T ss_dssp EEEEECTTSCEEEEEHHHHHHHHHHHBTT
T ss_pred EEEEecCccccccccHHHHHHHHHHHhCC
Confidence 99999999998765555555554444444
No 241
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.02 E-value=2.5e-10 Score=111.18 Aligned_cols=165 Identities=17% Similarity=0.237 Sum_probs=87.1
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeE
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVA 254 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~ 254 (545)
+++.|+.....++++++|+..+ +++|+|+||||||||++.|+|...| .++...... .+.+.+++.. .+..|+.
T Consensus 9 l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g-~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 9 ATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG-SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp EEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEEEECS-CEEEECSSCC-CCSEEHH
T ss_pred EEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECC-EEEEEcCCCc-CCCcCHH
Confidence 4556753123589999998877 9999999999999999999998742 111111110 2444455432 2222221
Q ss_pred eecCCCCCCcccccccchhhh-hhhcCchhhccCc-----eee-cCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE
Q 009050 255 VQADMPFSGLTTFGTAFLSKF-ECSQMPHSLLEHI-----TLV-DTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL 326 (545)
Q Consensus 255 ~~~~~~~~gl~~~~~~~~~~~-~~~~~~~~lL~~v-----~li-DTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl 326 (545)
.+..+.. ... .. ..... ..... .+.+... ..+ ..++.+| |++||+. +|++++.+|+++|+
T Consensus 84 enl~~~~-~~~--~~-~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~-------lAraL~~~p~lllL 151 (237)
T 2cbz_A 84 ENILFGC-QLE--EP-YYRSVIQACAL-LPDLEILPSGDRTEIGEKGVNLSGGQKQRVS-------LARAVYSNADIYLF 151 (237)
T ss_dssp HHHHTTS-CCC--TT-HHHHHHHHTTC-HHHHTTSTTGGGSEESTTSBCCCHHHHHHHH-------HHHHHHHCCSEEEE
T ss_pred HHhhCcc-ccC--HH-HHHHHHHHHhh-HHHHHhccccccccccCCCCCCCHHHHHHHH-------HHHHHhcCCCEEEE
Confidence 1111100 000 00 00000 00000 0001100 122 3566778 8999998 89999999999988
Q ss_pred -----EeCCCCCCccHHHHHHHH---HHhcCCCeEEEEecCCCC
Q 009050 327 -----LFDPHKLDISDEFKRVIT---SLRGHDDKIRVVLNKADQ 362 (545)
Q Consensus 327 -----vlD~~~~~~~~~~~~~l~---~L~~~~~~iiiVlNK~D~ 362 (545)
.+|+.. ...+.+++. .+. .+..++++.+..+.
T Consensus 152 DEPts~LD~~~---~~~i~~~l~~~~~~~-~~~tviivtH~~~~ 191 (237)
T 2cbz_A 152 DDPLSAVDAHV---GKHIFENVIGPKGML-KNKTRILVTHSMSY 191 (237)
T ss_dssp ESTTTTSCHHH---HHHHHHHTTSTTSTT-TTSEEEEECSCSTT
T ss_pred eCcccccCHHH---HHHHHHHHHHHHhhc-CCCEEEEEecChHH
Confidence 333321 222333331 112 36788888886553
No 242
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.02 E-value=1.9e-10 Score=125.28 Aligned_cols=145 Identities=19% Similarity=0.255 Sum_probs=88.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCC--CC-CCcccceEEEEeCCCccccCCceeEe-ecCCCCCCcccccccchhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHI--GP-EPTTDRFVVVMSGVDDRSIPGNTVAV-QADMPFSGLTTFGTAFLSK 274 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v--~~-~p~t~r~~i~~~~~~~~~~~g~t~~~-~~~~~~~gl~~~~~~~~~~ 274 (545)
.|+|+|..++|||||.-+|+-..- .+- |. ...+.....++.....+..+|.|+.. ...+.|.+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG--~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~----------- 99 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGG--AIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD----------- 99 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CHHHHHHHHHC--------------------CTTTEEEEEETT-----------
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcC--cccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC-----------
Confidence 799999999999999999974431 110 00 00111112234444555667777621 12233333
Q ss_pred hhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEE
Q 009050 275 FECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIR 354 (545)
Q Consensus 275 ~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~ii 354 (545)
..++|+||||..+ |..-+...+.-+|.+|+|+|+.. ++..+...+++.+.+.+.|++
T Consensus 100 -----------~~iNlIDTPGHvD-----------F~~Ev~raL~~~DgAvlVvda~~-GV~~qT~~v~~~a~~~~lp~i 156 (548)
T 3vqt_A 100 -----------RVVNLLDTPGHQD-----------FSEDTYRVLTAVDSALVVIDAAK-GVEAQTRKLMDVCRMRATPVM 156 (548)
T ss_dssp -----------EEEEEECCCCGGG-----------CSHHHHHHHHSCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCCEE
T ss_pred -----------EEEEEEeCCCcHH-----------HHHHHHHHHHhcCceEEEeecCC-CcccccHHHHHHHHHhCCceE
Confidence 3799999999854 33345556789999999999998 888999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHhc
Q 009050 355 VVLNKADQVDTQQLMRVYGALMWSLG 380 (545)
Q Consensus 355 iVlNK~D~~~~~~l~~v~~~l~~~l~ 380 (545)
+++||+|.... +..++...+...++
T Consensus 157 ~fINK~Dr~~a-d~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 157 TFVNKMDREAL-HPLDVMADIEQHLQ 181 (548)
T ss_dssp EEEECTTSCCC-CHHHHHHHHHHHHT
T ss_pred EEEecccchhc-chhHhhhhhhhhcC
Confidence 99999998742 23344444433334
No 243
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.00 E-value=1.9e-08 Score=105.28 Aligned_cols=155 Identities=12% Similarity=0.144 Sum_probs=87.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCC--CCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYP--GAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKF 275 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p--~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~ 275 (545)
.+|+|+|+||||||||+|+|+|...| |.+......+++. + ...+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-------------~--~v~q~~----------------- 117 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-------------R--HPYKHP----------------- 117 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-------------C--EEEECS-----------------
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-------------E--Eecccc-----------------
Confidence 38999999999999999999998754 2322222212111 0 001100
Q ss_pred hhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEE
Q 009050 276 ECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRV 355 (545)
Q Consensus 276 ~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iii 355 (545)
....++++|+||+... +.++.+. +.+.-+.+.+..+. ++... ...+...+.+.+...+.|+++
T Consensus 118 --------~~~~ltv~D~~g~~~~-~~~~~~~-----L~~~~L~~~~~~~~-lS~G~--~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 118 --------NIPNVVFWDLPGIGST-NFPPDTY-----LEKMKFYEYDFFII-ISATR--FKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp --------SCTTEEEEECCCGGGS-SCCHHHH-----HHHTTGGGCSEEEE-EESSC--CCHHHHHHHHHHHHTTCEEEE
T ss_pred --------ccCCeeehHhhcccch-HHHHHHH-----HHHcCCCccCCeEE-eCCCC--ccHHHHHHHHHHHhcCCCeEE
Confidence 0136889999998531 1122211 11112455566665 77653 245566778888878899999
Q ss_pred EecCCCCC------------CHHHHHHHHHHHHHH-hccc-ccCCccEEEEeec--cCCCccCc
Q 009050 356 VLNKADQV------------DTQQLMRVYGALMWS-LGKV-LNTPEVVRVYIGS--FNDKPVNE 403 (545)
Q Consensus 356 VlNK~D~~------------~~~~l~~v~~~l~~~-l~k~-~~~~~v~~v~iSa--~~~~~~~~ 403 (545)
|+||.|.+ ..+++.+.+..+... +.+. .....+ |.+|+ ..+.++++
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~i--iliSsh~l~~~~~e~ 242 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPI--FLLSNKNVCHYDFPV 242 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCE--EECCTTCTTSTTHHH
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcE--EEEecCcCCccCHHH
Confidence 99998865 234444444444311 1121 223344 78999 44444554
No 244
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.00 E-value=7.2e-10 Score=124.61 Aligned_cols=152 Identities=16% Similarity=0.122 Sum_probs=87.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEee-cCCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQ-ADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~-~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+|+|+..+|||||..+|+-.. ..+............+.....+..+|.|+... ..+.|.+-....+.
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~---g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~------- 84 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYT---GVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDN------- 84 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH---HHHHHC------------------------CCEEEEEECCTTSCSCC-------
T ss_pred EEEEEcCCCCCHHHHHHHHHHhc---CCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCC-------
Confidence 69999999999999999998332 11110001111122334444456777777322 22333321111110
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..++|+||||..+ |..-+...+.-+|.+|+++|+.. ++..+...++++..+.+.|.++++
T Consensus 85 --------~~iNlIDTPGHvD-----------F~~Ev~~aLr~~DgavlvVDave-GV~~qT~~v~~~a~~~~lp~i~~i 144 (709)
T 4fn5_A 85 --------YRVNVIDTPGHVD-----------FTIEVERSLRVLDGAVVVFCGTS-GVEPQSETVWRQANKYGVPRIVYV 144 (709)
T ss_dssp --------EEEEEECCCSCTT-----------CHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHHTCCEEEEE
T ss_pred --------EEEEEEeCCCCcc-----------cHHHHHHHHHHhCeEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEE
Confidence 2799999999865 43345556788999999999998 889999999999998999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcc
Q 009050 358 NKADQVDTQQLMRVYGALMWSLGK 381 (545)
Q Consensus 358 NK~D~~~~~~l~~v~~~l~~~l~k 381 (545)
||+|.... ++.++...+...++.
T Consensus 145 NKiDr~~a-~~~~~~~ei~~~l~~ 167 (709)
T 4fn5_A 145 NKMDRQGA-NFLRVVEQIKKRLGH 167 (709)
T ss_dssp ECSSSTTC-CHHHHHHHHHHHHCS
T ss_pred ccccccCc-cHHHHHHHhhhhccc
Confidence 99998642 233334444333343
No 245
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.00 E-value=1.4e-10 Score=128.86 Aligned_cols=129 Identities=20% Similarity=0.246 Sum_probs=90.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEe-ecCCCCCCcccccccchhhhhh
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAV-QADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~-~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
.|+|+|+.++|||||..+|+-.. ..++...........+.....+..+|.|+.. ...+.|.+
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~---G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~-------------- 66 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNS---GAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN-------------- 66 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHH---TCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--------------
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--------------
Confidence 48999999999999999997443 1111111111111122333444566777732 22344433
Q ss_pred hcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEe
Q 009050 278 SQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVL 357 (545)
Q Consensus 278 ~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVl 357 (545)
..++|+||||..+ |..-+...+.-+|.+|+++|+.. ++..+...+++.+...+.|.++++
T Consensus 67 --------~~iNlIDTPGH~D-----------F~~Ev~raL~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~~lp~i~~I 126 (638)
T 3j25_A 67 --------TKVNIIDTPGHMD-----------FLAEVYRSLSVLDGAILLISAKD-GVQAQTRILFHALRKMGIPTIFFI 126 (638)
T ss_dssp --------CBCCCEECCCSSS-----------THHHHHHHHTTCSEEECCEESSC-TTCSHHHHHHHHHHHHTCSCEECC
T ss_pred --------EEEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCeEEEE
Confidence 3799999999865 33345556789999999999997 788888899999988899999999
Q ss_pred cCCCCCC
Q 009050 358 NKADQVD 364 (545)
Q Consensus 358 NK~D~~~ 364 (545)
||+|...
T Consensus 127 NKmDr~~ 133 (638)
T 3j25_A 127 NKIDQNG 133 (638)
T ss_dssp EECCSSS
T ss_pred ecccccc
Confidence 9999874
No 246
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.97 E-value=5.5e-10 Score=122.90 Aligned_cols=169 Identities=19% Similarity=0.292 Sum_probs=96.9
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCCc------ccceEEEEeCCC
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEPT------TDRFVVVMSGVD 244 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p~------t~r~~i~~~~~~ 244 (545)
++++.|.....+++++++|+.++ +++|+|++|||||||+|.|+|...| |.+ +.+.+- .-+..+.+.+|+
T Consensus 346 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~ 425 (587)
T 3qf4_A 346 NVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE 425 (587)
T ss_dssp EEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSS
T ss_pred EEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCC
Confidence 34556644335689999998877 9999999999999999999998864 111 111111 113456666776
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCc-----eeec-CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI-----TLVD-TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v-----~liD-TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
+...++ |+..+.. + +..................++.+..+ +.++ .+..+| ||+||+. +||++
T Consensus 426 ~~lf~~-tv~eni~--~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~-------lARal 494 (587)
T 3qf4_A 426 TVLFSG-TIKENLK--W-GREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLS-------IARAL 494 (587)
T ss_dssp CCCCSE-EHHHHHT--T-TCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHH-------HHHHH
T ss_pred CcCcCc-cHHHHHh--c-cCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHH-------HHHHH
Confidence 655554 3211111 1 10000000000000001111111111 1233 445677 8999999 99999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+.+|+++|+ .+|+.. ...+.+.++.+. .+..+++|.|.
T Consensus 495 ~~~p~illlDEpts~LD~~~---~~~i~~~l~~~~-~~~tvi~itH~ 537 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDPIT---EKRILDGLKRYT-KGCTTFIITQK 537 (587)
T ss_dssp HTCCSEEEEESCCTTSCHHH---HHHHHHHHHHHS-TTCEEEEEESC
T ss_pred HcCCCEEEEECCcccCCHHH---HHHHHHHHHHhC-CCCEEEEEecC
Confidence 999999988 344432 344556666654 47888888884
No 247
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.97 E-value=5.5e-10 Score=122.90 Aligned_cols=170 Identities=16% Similarity=0.284 Sum_probs=94.9
Q ss_pred eeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC------cccceEEEEeCCC
Q 009050 176 EVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP------TTDRFVVVMSGVD 244 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p------~t~r~~i~~~~~~ 244 (545)
++++.|+....+++++++++.++ +++|+|++|||||||++.|+|...| |.+ +.+.+ ...+..+.+.+|+
T Consensus 346 ~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b5x_A 346 DVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQN 425 (582)
T ss_pred EEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCC
Confidence 34556653213589999998877 9999999999999999999998854 111 11111 1113345566665
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCc-----eee-cCCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI-----TLV-DTPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v-----~li-DTPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
+...++ |+..+-.+.. ........+.........++.++.+ +.+ +.++.+| ||+||+. +||++
T Consensus 426 ~~l~~~-tv~eni~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~-------iAral 495 (582)
T 3b5x_A 426 VHLFND-TIANNIAYAA--EGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA-------IARAL 495 (582)
T ss_pred Cccccc-cHHHHHhccC--CCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHH-------HHHHH
Confidence 554444 2211111100 0000000000000000011111111 011 1234566 8999999 99999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
+.+|+++|+ .+|+.. ...+.+.+..+.+ +..+++|.|.
T Consensus 496 ~~~p~illlDEpts~LD~~~---~~~i~~~l~~~~~-~~tvi~itH~ 538 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTES---ERAIQAALDELQK-NKTVLVIAHR 538 (582)
T ss_pred HcCCCEEEEECccccCCHHH---HHHHHHHHHHHcC-CCEEEEEecC
Confidence 999999998 566543 4456667777654 7788888884
No 248
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.97 E-value=9.9e-11 Score=115.71 Aligned_cols=147 Identities=17% Similarity=0.162 Sum_probs=84.1
Q ss_pred Cccccccccc-CceEEEEcCCCCChHHHHHHHHcccCCC--CC-CCCCCcc---cceEEE-EeCCCccccCCceeEeecC
Q 009050 187 PLLTNSDFDA-KPMVMLLGQYSTGKTTFIKHLLRTSYPG--AH-IGPEPTT---DRFVVV-MSGVDDRSIPGNTVAVQAD 258 (545)
Q Consensus 187 ~~l~~~~~~~-~~~V~lvG~~naGKSTLlN~Llg~~~p~--~~-v~~~p~t---~r~~i~-~~~~~~~~~~g~t~~~~~~ 258 (545)
.++++++|+. +.+++|+|+||||||||++.|+|.. |. .+ +...+.+ .+..+. +.+++...
T Consensus 19 ~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l----------- 86 (263)
T 2pjz_A 19 FSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI----------- 86 (263)
T ss_dssp EEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-----------
T ss_pred eeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-----------
Confidence 3788877666 5699999999999999999999987 61 11 1110000 011222 22222211
Q ss_pred CCCCCccccccc-chhhh--hhhcCchhhccCceee-c----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE---
Q 009050 259 MPFSGLTTFGTA-FLSKF--ECSQMPHSLLEHITLV-D----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL--- 326 (545)
Q Consensus 259 ~~~~gl~~~~~~-~~~~~--~~~~~~~~lL~~v~li-D----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl--- 326 (545)
.+....+. +.... .......++++.+.+. + .|+.+| |++||+. +|++++.+|+++|+
T Consensus 87 ----~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~-------lAraL~~~p~lllLDEP 155 (263)
T 2pjz_A 87 ----GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVR-------TSLALASQPEIVGLDEP 155 (263)
T ss_dssp ----TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHH-------HHHHHHTCCSEEEEECT
T ss_pred ----CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHH-------HHHHHHhCCCEEEEECC
Confidence 11111111 00000 0111233455555554 2 467778 8999998 89999999999988
Q ss_pred --EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCC
Q 009050 327 --LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQ 362 (545)
Q Consensus 327 --vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~ 362 (545)
.+|+.. ...+.+++..+.+ .++++.|..+.
T Consensus 156 ts~LD~~~---~~~l~~~L~~~~~---tviivtHd~~~ 187 (263)
T 2pjz_A 156 FENVDAAR---RHVISRYIKEYGK---EGILVTHELDM 187 (263)
T ss_dssp TTTCCHHH---HHHHHHHHHHSCS---EEEEEESCGGG
T ss_pred ccccCHHH---HHHHHHHHHHhcC---cEEEEEcCHHH
Confidence 344432 3445555555543 78888886543
No 249
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.96 E-value=9.1e-10 Score=121.14 Aligned_cols=163 Identities=17% Similarity=0.229 Sum_probs=96.6
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC------cccceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP------TTDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p------~t~r~~i~~~~~~~ 245 (545)
+++.|+....+++++++|+.++ +++|+|++|||||||++.|+|...| |.+ +.+.+ ...+..+.+.+|++
T Consensus 347 v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 426 (582)
T 3b60_A 347 VTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426 (582)
T ss_dssp EEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSC
T ss_pred EEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCC
Confidence 4456653213589999998877 9999999999999999999998754 111 11111 11133456666665
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCcee--------------ec-CCCCCC-hhhhhhhhccC
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITL--------------VD-TPGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~l--------------iD-TPG~~s-gekq~v~~~~~ 309 (545)
...++ |+..+..+.. ...... ....++++.+.+ ++ .++.+| ||+||+.
T Consensus 427 ~l~~~-tv~eni~~~~--~~~~~~---------~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~---- 490 (582)
T 3b60_A 427 HLFND-TVANNIAYAR--TEEYSR---------EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA---- 490 (582)
T ss_dssp CCCSS-BHHHHHHTTT--TSCCCH---------HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHH----
T ss_pred cCCCC-CHHHHHhccC--CCCCCH---------HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHH----
Confidence 55554 3311111100 000000 001111111111 12 234567 8999999
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQ 362 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~ 362 (545)
+||+++.+|+++|+ .+|+.. ...+.+.+..+.+ +..+++|.|..+.
T Consensus 491 ---iAral~~~p~illlDEpts~LD~~~---~~~i~~~l~~~~~-~~tvi~itH~~~~ 541 (582)
T 3b60_A 491 ---IARALLRDSPILILDEATSALDTES---ERAIQAALDELQK-NRTSLVIAHRLST 541 (582)
T ss_dssp ---HHHHHHHCCSEEEEETTTSSCCHHH---HHHHHHHHHHHHT-TSEEEEECSCGGG
T ss_pred ---HHHHHHhCCCEEEEECccccCCHHH---HHHHHHHHHHHhC-CCEEEEEeccHHH
Confidence 99999999999988 455542 4456677777765 7888999886553
No 250
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.94 E-value=8.6e-11 Score=126.10 Aligned_cols=176 Identities=13% Similarity=0.092 Sum_probs=93.2
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeE-EEEecCCCCCC
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKI-RVVLNKADQVD 364 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~i-iiVlNK~D~~~ 364 (545)
..+.||||||........... ...+.+ +..||.+++|+|+.. +. +..+....+.+. .++ .+|+||+|...
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~e---l~~~~~--~i~pd~vllVvDa~~-g~--~~~~~a~~~~~~-~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEE---MLQVAN--AIQPDNIVYVMDASI-GQ--ACEAQAKAFKDK-VDVASVIVTKLDGHA 254 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHH---HHHHHH--HHCCSEEEEEEETTC-CT--THHHHHHHHHHH-HCCCCEEEECTTSCC
T ss_pred CcEEEEeCCCCcccchhHHHH---HHHHHh--hhcCceEEEEEeccc-cc--cHHHHHHHHHhh-cCceEEEEeCCcccc
Confidence 378999999998532111110 001112 238999999999986 22 233444444432 464 89999999875
Q ss_pred HHH-HHHHHHHHHHHhccc-------------ccCCccEEEEeeccCCCc-cCc----ccCCC-----c-cHHhhHHH--
Q 009050 365 TQQ-LMRVYGALMWSLGKV-------------LNTPEVVRVYIGSFNDKP-VNE----SAFGP-----L-GKELFEKE-- 417 (545)
Q Consensus 365 ~~~-l~~v~~~l~~~l~k~-------------~~~~~v~~v~iSa~~~~~-~~~----~~~~~-----~-~~~~f~~e-- 417 (545)
... ...+... ++.- ..+... +++|+..|.| +.. ....+ . ...+...+
T Consensus 255 ~~g~~l~~~~~----~g~PI~fig~ge~~~dl~~f~~~--~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~~g~~~ 328 (504)
T 2j37_W 255 KGGGALSAVAA----TKSPIIFIGTGEHIDDFEPFKTQ--PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFT 328 (504)
T ss_dssp CCTHHHHHHHH----HCCCEEEEECSSSTTCEECCTHH--HHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCTTSGGG
T ss_pred chHHHHHHHHH----hCCCeEEeccccchhhhhccCcc--eeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 321 2222211 1211 112222 4688888888 654 10000 0 01111111
Q ss_pred HHHHHHHHhh------------chhHHHH--HHHHHH-HHHHHHHHHHHHHH----HHHhhhc-hhhhchhhhHHHHHH
Q 009050 418 QDDLLSDLKD------------IPKKACD--RRINEF-VKRARAAKIHAYII----SHLRKEM-PAMMGKAKTQQKLID 476 (545)
Q Consensus 418 ~e~ll~~l~~------------~~~~~~~--~~i~~~-~~~~~~~~i~a~i~----~~~~~~~-~~~~gk~~~~~~~i~ 476 (545)
.++++..+.+ .+|+... .....+ ....+..++.|.|. .++++++ |.+||+++..++.|.
T Consensus 329 l~d~~~~l~~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~~sr~~ria 407 (504)
T 2j37_W 329 LRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVA 407 (504)
T ss_dssp GCCCHHHHHHCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCChHHHHHHH
Confidence 2345555554 2444321 111111 12245678889888 8899888 999988877766654
No 251
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.94 E-value=7.6e-10 Score=122.09 Aligned_cols=172 Identities=15% Similarity=0.218 Sum_probs=95.5
Q ss_pred eeeEEeCCc-ccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC------cccceEEEEeCC
Q 009050 176 EVTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP------TTDRFVVVMSGV 243 (545)
Q Consensus 176 ~~~~~~~~~-~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p------~t~r~~i~~~~~ 243 (545)
.+++.|++. ..+++++++|+.++ +++|+|++|||||||++.|+|...| |.+ +.+.+ ...+..+.+.+|
T Consensus 346 ~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q 425 (595)
T 2yl4_A 346 NVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 425 (595)
T ss_dssp EEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECS
T ss_pred EEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEcc
Confidence 345566532 13489999998877 9999999999999999999998864 111 11111 112334666666
Q ss_pred CccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCce-eecC-----CCCCC-hhhhhhhhccChHHHHHH
Q 009050 244 DDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHIT-LVDT-----PGVLS-GEKQRTQRAYDFTGVTSW 316 (545)
Q Consensus 244 ~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~-liDT-----PG~~s-gekq~v~~~~~~~~ia~~ 316 (545)
++...++ |+..+-.+............+.........++.+..+. -.|| +..+| ||+||+. +||+
T Consensus 426 ~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~-------iAra 497 (595)
T 2yl4_A 426 EPILFSC-SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIA-------IARA 497 (595)
T ss_dssp SCCCCSS-BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHH-------HHHH
T ss_pred CCcccCC-CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHH-------HHHH
Confidence 6555554 33111111000000000000000000000111111110 0122 35677 8999999 9999
Q ss_pred HhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 317 ~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
++.+|+++|+ .+|+.. ...+.+.+..+.+ +..+++|.|.
T Consensus 498 l~~~p~illlDEpts~LD~~~---~~~i~~~l~~~~~-~~tvi~itH~ 541 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAEN---EYLVQEALDRLMD-GRTVLVIAHR 541 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHHH---HHHHHHHHHHHHT-TSEEEEECCC
T ss_pred HHcCCCEEEEECcccCCCHHH---HHHHHHHHHHHhc-CCEEEEEecC
Confidence 9999999998 455432 4456667777665 6788888873
No 252
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.92 E-value=4.4e-10 Score=123.50 Aligned_cols=171 Identities=20% Similarity=0.271 Sum_probs=95.6
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC------cccceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP------TTDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p------~t~r~~i~~~~~~~ 245 (545)
+++.|+....+++++++|+.++ +++|+|++|||||||++.|+|...| |.+ +.+.+ ...+..+.+.+|++
T Consensus 345 v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 424 (578)
T 4a82_A 345 VSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDN 424 (578)
T ss_dssp EEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSC
T ss_pred EEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCC
Confidence 4556654334689999998877 9999999999999999999998854 111 11111 11133456666665
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCc-----eee-cCCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI-----TLV-DTPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v-----~li-DTPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
...++ |+..+-.+ |........+.........++.+..+ +.+ +.+..+| ||+||+. +||+++
T Consensus 425 ~l~~~-tv~eni~~---~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~-------lAral~ 493 (578)
T 4a82_A 425 ILFSD-TVKENILL---GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS-------IARIFL 493 (578)
T ss_dssp CCCSS-BHHHHHGG---GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHH-------HHHHHH
T ss_pred ccCcc-cHHHHHhc---CCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHH-------HHHHHH
Confidence 55554 22111111 00000000000000000111111111 111 2234567 8999999 999999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQ 362 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~ 362 (545)
.+|+++|+ .+|+.. ...+.+.++.+.+ +..+++|.|..+.
T Consensus 494 ~~p~illlDEpts~LD~~~---~~~i~~~l~~~~~-~~t~i~itH~l~~ 538 (578)
T 4a82_A 494 NNPPILILDEATSALDLES---ESIIQEALDVLSK-DRTTLIVAHRLST 538 (578)
T ss_dssp HCCSEEEEESTTTTCCHHH---HHHHHHHHHHHTT-TSEEEEECSSGGG
T ss_pred cCCCEEEEECccccCCHHH---HHHHHHHHHHHcC-CCEEEEEecCHHH
Confidence 99999988 344432 3445566666644 5788888886554
No 253
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.91 E-value=1.5e-09 Score=111.75 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=59.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhhhhh
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFEC 277 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~ 277 (545)
..|+|+|.||||||||+|+|+|.. ..+++.|.||.... .|.. .+.+. .+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~---~~v~~~p~tTi~p~----------~g~v-------~~~~~------r~~~l~~ 56 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG---IEAANYPFCTIEPN----------TGVV-------PMPDP------RLDALAE 56 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC---------CCCCCCCC----------SSEE-------ECCCH------HHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCceECce----------EEEE-------ecCCc------ccceeee
Confidence 469999999999999999999977 55666665554321 0100 00000 0000000
Q ss_pred hcCchhhc-cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEE
Q 009050 278 SQMPHSLL-EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 278 ~~~~~~lL-~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiV 356 (545)
...+.... ..+.|+||||+..+..+.-..+-.| ...++++|++++|+|++. +.+++.|
T Consensus 57 ~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~f----l~~ir~ad~il~VvD~~~-----------------~~~v~~v 115 (363)
T 1jal_A 57 IVKPERILPTTMEFVDIAGLVAGASKGEGLGNKF----LANIRETDAIGHVVRCFE-----------------NDDIVHV 115 (363)
T ss_dssp HHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCH----HHHHHTCSEEEEEEECSC-----------------C------
T ss_pred eecccceeeeEEEEEECCCCcccccccchHHHHH----HHHHHhcCeEEEEEecCC-----------------CCceeee
Confidence 00111111 3689999999987532211111122 234789999999999985 2345677
Q ss_pred ecCCCCC
Q 009050 357 LNKADQV 363 (545)
Q Consensus 357 lNK~D~~ 363 (545)
.||.|-.
T Consensus 116 ~~~~dp~ 122 (363)
T 1jal_A 116 AGKIDPL 122 (363)
T ss_dssp ---CCHH
T ss_pred cCCcChH
Confidence 7887743
No 254
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.91 E-value=2.9e-09 Score=112.44 Aligned_cols=170 Identities=11% Similarity=0.086 Sum_probs=86.7
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHH--hcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCC-e-EEEEecCCC
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWF--AAKCDLILLLFDPHKLDISDEFKRVITSLRGHDD-K-IRVVLNKAD 361 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~--~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~-~-iiiVlNK~D 361 (545)
..+.|+||||.......... ....+ +..||.+++++|+.. + .+.....+.+... . + ..+|+||+|
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~-------~l~~i~~~~~~d~vllVvda~~-g--~~~~~~~~~~~~~-~~~i~gvVlnK~D 249 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLE-------EMKQIKEITNPDEIILVIDGTI-G--QQAGIQAKAFKEA-VGEIGSIIVTKLD 249 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHH-------HHHHTTSSSCCSEEEEEEEGGG-G--GGHHHHHHHHHTT-SCSCEEEEEECSS
T ss_pred CCEEEEcCCCCccccHHHHH-------HHHHHHHHhcCcceeEEeeccc-c--HHHHHHHHHHhhc-ccCCeEEEEeCCC
Confidence 36889999999863211111 01111 347999999999975 2 2333444555443 3 4 889999999
Q ss_pred CCCHHH-HHHHHHHHHHHhccc-------------ccCCccEEEEeeccCCCc-cCc-----ccCCCc-----cHHhhHH
Q 009050 362 QVDTQQ-LMRVYGALMWSLGKV-------------LNTPEVVRVYIGSFNDKP-VNE-----SAFGPL-----GKELFEK 416 (545)
Q Consensus 362 ~~~~~~-l~~v~~~l~~~l~k~-------------~~~~~v~~v~iSa~~~~~-~~~-----~~~~~~-----~~~~f~~ 416 (545)
...... ...+.. ..+.- ..+.. ..++|+..|.| +.. ....++ ...+...
T Consensus 250 ~~~~~g~~l~~~~----~~~~pi~~ig~Ge~~~dl~~f~~--~~~~s~l~g~gdi~~L~e~~~~~~~e~~~~~~~k~~~~ 323 (432)
T 2v3c_C 250 GSAKGGGALSAVA----ETKAPIKFIGIGEGIDDLEPFDP--KKFISRLLGMGDLESLLEKAEDMVDEKTEESIDAIMRG 323 (432)
T ss_dssp SCSTTHHHHHHHH----HSSCCEEEECCSSSSSSCCBCCH--HHHHHHHTCSSCSSTTSSTTTSCSCSSSSTTHHHHCCS
T ss_pred CccchHHHHHHHH----HHCCCEEEeecCccccccccCCH--HHHHHHHcCCCcHHHHHHHHHHHHHhhhHHHHHHHHcC
Confidence 875322 222211 11211 11111 14678888887 554 111121 1111111
Q ss_pred --HHHHHHHHHhh------------chhHHHHH-HHHHHHH-HHHHHHHHHHHH----HHHhhhchhhhchhhhHHHHHH
Q 009050 417 --EQDDLLSDLKD------------IPKKACDR-RINEFVK-RARAAKIHAYII----SHLRKEMPAMMGKAKTQQKLID 476 (545)
Q Consensus 417 --e~e~ll~~l~~------------~~~~~~~~-~i~~~~~-~~~~~~i~a~i~----~~~~~~~~~~~gk~~~~~~~i~ 476 (545)
..++++..+.+ ++|+.... .++++.. ..+..++.|.|. +++++++ +| +|.+++.|+
T Consensus 324 ~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~--~i--~~sr~~rI~ 399 (432)
T 2v3c_C 324 KFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPK--II--KASRIRRIA 399 (432)
T ss_dssp CCHHHHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCT--TC--CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcc--cc--CHHHHHHHH
Confidence 14677777775 78875432 2344432 245789999999 9999988 44 455555554
No 255
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.87 E-value=2.7e-09 Score=117.71 Aligned_cols=160 Identities=18% Similarity=0.237 Sum_probs=93.2
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC------cccceEEEEeCCCc
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP------TTDRFVVVMSGVDD 245 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p------~t~r~~i~~~~~~~ 245 (545)
+++.|+.. .+++++++|+.++ +++|+|++|||||||++.|+|...| |.+ +.+.+ ...+..+.+.+|++
T Consensus 360 v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~ 438 (598)
T 3qf4_B 360 VWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDT 438 (598)
T ss_dssp EECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTC
T ss_pred EEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCC
Confidence 34455432 3589999998877 9999999999999999999998864 111 11111 11133466666665
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCcee---e-------c-----CCCCCC-hhhhhhhhccC
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITL---V-------D-----TPGVLS-GEKQRTQRAYD 309 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~l---i-------D-----TPG~~s-gekq~v~~~~~ 309 (545)
...+++.. .+-.+...+. .. ....+.++.+.+ + | .+..+| ||+||++
T Consensus 439 ~lf~~tv~-eni~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~---- 501 (598)
T 3qf4_B 439 ILFSTTVK-ENLKYGNPGA---TD---------EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLA---- 501 (598)
T ss_dssp CCCSSBHH-HHHHSSSTTC---CT---------THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHH----
T ss_pred ccccccHH-HHHhcCCCCC---CH---------HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHH----
Confidence 55544221 1110000000 00 001111111111 1 1 124567 8999999
Q ss_pred hHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 310 FTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 310 ~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+||+++.+|+++|+ .+|+.. ...+.+.+..+. .+..+++|.|..+
T Consensus 502 ---iAral~~~p~illlDEpts~LD~~~---~~~i~~~l~~~~-~~~t~i~itH~l~ 551 (598)
T 3qf4_B 502 ---ITRAFLANPKILILDEATSNVDTKT---EKSIQAAMWKLM-EGKTSIIIAHRLN 551 (598)
T ss_dssp ---HHHHHHTCCSEEEECCCCTTCCHHH---HHHHHHHHHHHH-TTSEEEEESCCTT
T ss_pred ---HHHHHhcCCCEEEEECCccCCCHHH---HHHHHHHHHHHc-CCCEEEEEecCHH
Confidence 99999999999887 344321 345556666665 3788999988654
No 256
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.87 E-value=1.6e-09 Score=117.63 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=83.2
Q ss_pred ccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhh
Q 009050 195 DAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSK 274 (545)
Q Consensus 195 ~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~ 274 (545)
..+.+++|+|+||||||||+++|+|...| .++........+.+..+........++...... ....+..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~-------~~~~~~~- 360 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITA---DEGSVTPEKQILSYKPQRIFPNYDGTVQQYLEN-------ASKDALS- 360 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCC---SBCCEESSCCCEEEECSSCCCCCSSBHHHHHHH-------HCSSTTC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCeeeEeechhcccccCCCHHHHHHH-------hhhhccc-
Confidence 34559999999999999999999998853 233222222333333332211111111000000 0000000
Q ss_pred hhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHH
Q 009050 275 FECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVIT 344 (545)
Q Consensus 275 ~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~ 344 (545)
.......++++.+.+.+ .|+.+| |++||+. +|++++.+|+++|+ .+|+.. ..++.++++
T Consensus 361 -~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~-------iAraL~~~p~lLlLDEPT~gLD~~~---~~~i~~~l~ 429 (538)
T 3ozx_A 361 -TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLY-------IAATLAKEADLYVLDQPSSYLDVEE---RYIVAKAIK 429 (538)
T ss_dssp -TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHH-------HHHHHHSCCSEEEEESTTTTCCHHH---HHHHHHHHH
T ss_pred -hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEeCCccCCCHHH---HHHHHHHHH
Confidence 00111234555555543 567788 7999999 99999999999998 455432 456677888
Q ss_pred HHhc-CCCeEEEEec
Q 009050 345 SLRG-HDDKIRVVLN 358 (545)
Q Consensus 345 ~L~~-~~~~iiiVlN 358 (545)
.+.. .+..+++|.+
T Consensus 430 ~l~~~~g~tvi~vsH 444 (538)
T 3ozx_A 430 RVTRERKAVTFIIDH 444 (538)
T ss_dssp HHHHHTTCEEEEECS
T ss_pred HHHHhCCCEEEEEeC
Confidence 7754 5778888887
No 257
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.85 E-value=3e-09 Score=104.41 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=42.7
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHH----HHHhcCCCeEEEEecCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVI----TSLRGHDDKIRVVLNKADQ 362 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l----~~L~~~~~~iiiVlNK~D~ 362 (545)
.+.|+||||..+.... . .. ...+. ..+.+ +++++++|+............. ......+.|+++|+||+|+
T Consensus 110 d~iiiDtpG~~~~~~~--~-~l-~~~~~-~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLF--H-EF-GVRLM-ENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL 183 (262)
T ss_dssp SEEEEECCSSHHHHHH--S-HH-HHHHH-HTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGG
T ss_pred CEEEEeCCCccchhhh--h-hh-HHHHH-HHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccc
Confidence 7899999998642110 0 00 00112 22356 8999999986421112222211 2222346799999999999
Q ss_pred CCHHH
Q 009050 363 VDTQQ 367 (545)
Q Consensus 363 ~~~~~ 367 (545)
.+..+
T Consensus 184 ~~~~~ 188 (262)
T 1yrb_A 184 LSEEE 188 (262)
T ss_dssp CCHHH
T ss_pred ccccc
Confidence 87543
No 258
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.83 E-value=3.9e-09 Score=114.75 Aligned_cols=170 Identities=18% Similarity=0.144 Sum_probs=92.8
Q ss_pred eeEEeCCcccCcccccc-cccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEE--EEeCCCcc-------
Q 009050 177 VTYRFNDFVSPLLTNSD-FDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVV--VMSGVDDR------- 246 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~-~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i--~~~~~~~~------- 246 (545)
+++.|+.. ...+.+++ +..+.+++|+|+||||||||+|.|+|...|. ++........+ ...+....
T Consensus 27 ls~~yg~~-~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 27 CVHRYGVN-AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp EEEECSTT-CCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cEEEECCc-cccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 45577652 13677786 3344499999999999999999999988541 11100000000 00000000
Q ss_pred -ccCCceeEeecCCCCCCccccccc--chhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 247 -SIPGNTVAVQADMPFSGLTTFGTA--FLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 247 -~~~g~t~~~~~~~~~~gl~~~~~~--~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
...+.....+....+.... .+.. .+..........++|+.+.+-+ .++.+| |++||+. +|++++
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~-~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~-------iAraL~ 174 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAV-KGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVA-------IAAALL 174 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGC-CSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHH-------HHHHHH
T ss_pred HHhhhhhhhhhhhhhcchhh-hccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHH-------HHHHHh
Confidence 0001111111000000000 0000 0111111234455666666643 456677 8999999 899999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
.+|+++|+ .+|+.. ...+.++++.+++.+..+++|.|..+
T Consensus 175 ~~P~lLlLDEPTs~LD~~~---~~~l~~~L~~l~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLDIRQ---RLNAARAIRRLSEEGKSVLVVEHDLA 219 (538)
T ss_dssp SCCSEEEEESTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cCCCEEEEECCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999988 444432 45677888888767788888888643
No 259
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.82 E-value=1.2e-09 Score=109.54 Aligned_cols=152 Identities=16% Similarity=0.246 Sum_probs=80.3
Q ss_pred cCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCC
Q 009050 186 SPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSG 263 (545)
Q Consensus 186 ~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~g 263 (545)
..++++++|...+ +++|+|+||||||||++.|+|...| .++...-.. .+.+.++.....++ |+..+.. +
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g-~i~~v~Q~~~l~~~-tv~enl~----~ 121 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG-RISFCSQNSWIMPG-TIKENII----G 121 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS-CEEEECSSCCCCSS-BHHHHHH----T
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC-EEEEEeCCCccCcc-cHHHHhh----C
Confidence 3588999988776 9999999999999999999998743 111111111 24555665544444 3311110 1
Q ss_pred cccccccchhhhhhhcCchhhccCce------eecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCC
Q 009050 264 LTTFGTAFLSKFECSQMPHSLLEHIT------LVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPH 331 (545)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~lL~~v~------liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~ 331 (545)
.. ................+.+..+. +-+.++.+| |++||+. +|++++.+|+++|+ .+|+.
T Consensus 122 ~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~-------lAraL~~~p~lllLDEPts~LD~~ 193 (290)
T 2bbs_A 122 VS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS-------LARAVYKDADLYLLDSPFGYLDVL 193 (290)
T ss_dssp TC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHH-------HHHHHHSCCSEEEEESTTTTCCHH
T ss_pred cc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHH-------HHHHHHCCCCEEEEECCcccCCHH
Confidence 00 00000000000000111111111 112346788 8999998 89999999999988 34432
Q ss_pred CCCccHHHHHH-HHHHhcCCCeEEEEec
Q 009050 332 KLDISDEFKRV-ITSLRGHDDKIRVVLN 358 (545)
Q Consensus 332 ~~~~~~~~~~~-l~~L~~~~~~iiiVlN 358 (545)
. ...+.++ +..+. .+..++++.|
T Consensus 194 ~---~~~i~~~ll~~~~-~~~tviivtH 217 (290)
T 2bbs_A 194 T---EKEIFESCVCKLM-ANKTRILVTS 217 (290)
T ss_dssp H---HHHHHHHCCCCCT-TTSEEEEECC
T ss_pred H---HHHHHHHHHHHhh-CCCEEEEEec
Confidence 1 1222222 11222 3567787777
No 260
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.81 E-value=5.5e-09 Score=114.99 Aligned_cols=143 Identities=23% Similarity=0.266 Sum_probs=86.6
Q ss_pred ccccccc--cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCccc
Q 009050 189 LTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTT 266 (545)
Q Consensus 189 l~~~~~~--~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~ 266 (545)
++..+++ .+.+++|+|+||||||||++.|+|...| .++.... ...+.+.+++....+..|+
T Consensus 372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~-~~~i~~v~Q~~~~~~~~tv------------- 434 (607)
T 3bk7_A 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP---TEGKVEW-DLTVAYKPQYIKAEYEGTV------------- 434 (607)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC---SBSCCCC-CCCEEEECSSCCCCCSSBH-------------
T ss_pred EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEE-eeEEEEEecCccCCCCCcH-------------
Confidence 4444433 3459999999999999999999998854 2222211 2235555554332222222
Q ss_pred ccccc-h--hhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCC
Q 009050 267 FGTAF-L--SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKL 333 (545)
Q Consensus 267 ~~~~~-~--~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~ 333 (545)
..... . ..........++++.+.+.+ .|+.+| ||+||+. +|++++.+|+++|+ .+|+..
T Consensus 435 ~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~-------iAraL~~~p~lLlLDEPt~~LD~~~- 506 (607)
T 3bk7_A 435 YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVA-------IAATLLRDADIYLLDEPSAYLDVEQ- 506 (607)
T ss_dssp HHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHH-------HHHHHTSCCSEEEEECTTTTCCHHH-
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHHHHHhCCCEEEEeCCccCCCHHH-
Confidence 00000 0 00011122334555555533 466778 7999998 89999999999988 455432
Q ss_pred CccHHHHHHHHHHh-cCCCeEEEEec
Q 009050 334 DISDEFKRVITSLR-GHDDKIRVVLN 358 (545)
Q Consensus 334 ~~~~~~~~~l~~L~-~~~~~iiiVlN 358 (545)
..++.++++.+. +.+..+++|.|
T Consensus 507 --~~~l~~~l~~l~~~~g~tvi~vsH 530 (607)
T 3bk7_A 507 --RLAVSRAIRHLMEKNEKTALVVEH 530 (607)
T ss_dssp --HHHHHHHHHHHHHHTTCEEEEECS
T ss_pred --HHHHHHHHHHHHHhCCCEEEEEeC
Confidence 456677777775 45778888887
No 261
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.77 E-value=6.4e-09 Score=114.44 Aligned_cols=171 Identities=20% Similarity=0.172 Sum_probs=92.7
Q ss_pred eeeEEeCCcccCcccccc-cccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEE--EEeCCCcc------
Q 009050 176 EVTYRFNDFVSPLLTNSD-FDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVV--VMSGVDDR------ 246 (545)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~-~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i--~~~~~~~~------ 246 (545)
.+++.|+.. ...+.+++ +..+.+++|+|+||||||||+|.|+|...|. ++........+ ...+....
T Consensus 96 ~ls~~yg~~-~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 96 DCVHRYGVN-AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp SEEEECSTT-CCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCC-CeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhhhhhhh
Confidence 445577652 13677776 3344599999999999999999999988641 11100000000 00000000
Q ss_pred --ccCCceeEeecCCCCCCcc--cccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 247 --SIPGNTVAVQADMPFSGLT--TFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 247 --~~~g~t~~~~~~~~~~gl~--~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
...+.....+....+.... +... .+..........++|+.+.|-+ .++.+| ||+||+. +|+++
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e-~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRva-------IAraL 243 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRE-LLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVA-------IAAAL 243 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHH-HHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHH-------HHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHH-HhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHH-------HHHHH
Confidence 0000011111000000000 0000 0111111233455666665543 467778 8999999 89999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
+.+|+++|+ .+|+.. ..++.++++.+.+.+..+++|.|..+
T Consensus 244 ~~~P~lLlLDEPTs~LD~~~---~~~l~~~L~~l~~~g~tvIivsHdl~ 289 (607)
T 3bk7_A 244 LRKAHFYFFDEPSSYLDIRQ---RLKVARVIRRLANEGKAVLVVEHDLA 289 (607)
T ss_dssp HSCCSEEEEECTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred hcCCCEEEEECCcccCCHHH---HHHHHHHHHHHHhcCCEEEEEecChH
Confidence 999999998 455432 45677888888666788888888543
No 262
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.77 E-value=2.6e-09 Score=116.04 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=50.7
Q ss_pred CchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcC
Q 009050 280 MPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGH 349 (545)
Q Consensus 280 ~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~ 349 (545)
...++++.+.+.+ .++.+| |++||+. +|++++.+|+++|+ .+|+.. ...+.++++.+++
T Consensus 118 ~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~-------iA~aL~~~p~illlDEPts~LD~~~---~~~l~~~l~~l~~- 186 (538)
T 3ozx_A 118 KKDEVKELLNMTNLWNKDANILSGGGLQRLL-------VAASLLREADVYIFDQPSSYLDVRE---RMNMAKAIRELLK- 186 (538)
T ss_dssp CHHHHHHHTTCGGGTTSBGGGCCHHHHHHHH-------HHHHHHSCCSEEEEESTTTTCCHHH---HHHHHHHHHHHCT-
T ss_pred HHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEECCcccCCHHH---HHHHHHHHHHHhC-
Confidence 3445555555543 456677 8999999 89999999999888 344432 3456778888876
Q ss_pred CCeEEEEecCCC
Q 009050 350 DDKIRVVLNKAD 361 (545)
Q Consensus 350 ~~~iiiVlNK~D 361 (545)
+..+++|.|..+
T Consensus 187 g~tii~vsHdl~ 198 (538)
T 3ozx_A 187 NKYVIVVDHDLI 198 (538)
T ss_dssp TSEEEEECSCHH
T ss_pred CCEEEEEEeChH
Confidence 788888888643
No 263
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.75 E-value=9.1e-09 Score=111.87 Aligned_cols=143 Identities=23% Similarity=0.266 Sum_probs=87.3
Q ss_pred ccccccc--cCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCccc
Q 009050 189 LTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTT 266 (545)
Q Consensus 189 l~~~~~~--~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~ 266 (545)
++..+|. .+.+++|+|+||||||||++.|+|...| .++.... ...+.+.+++....+..|+
T Consensus 302 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~i~~-~~~i~~v~Q~~~~~~~~tv------------- 364 (538)
T 1yqt_A 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP---TEGKIEW-DLTVAYKPQYIKADYEGTV------------- 364 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC---SBCCCCC-CCCEEEECSSCCCCCSSBH-------------
T ss_pred EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEE-CceEEEEecCCcCCCCCcH-------------
Confidence 3444433 3459999999999999999999998853 2222211 2234555554332222222
Q ss_pred ccccc-h--hhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCC
Q 009050 267 FGTAF-L--SKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKL 333 (545)
Q Consensus 267 ~~~~~-~--~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~ 333 (545)
..... . ...........+++.+.+-+ .|+.+| |++||+. +|++++.+|+++|+ .+|...
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~-------lAraL~~~p~lLlLDEPt~~LD~~~- 436 (538)
T 1yqt_A 365 YELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVA-------IAATLLRDADIYLLDEPSAYLDVEQ- 436 (538)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHH-------HHHHHTSCCSEEEEECTTTTCCHHH-
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-------HHHHHHhCCCEEEEeCCcccCCHHH-
Confidence 00000 0 00011122345566666543 467788 7999998 89999999999988 455432
Q ss_pred CccHHHHHHHHHHh-cCCCeEEEEec
Q 009050 334 DISDEFKRVITSLR-GHDDKIRVVLN 358 (545)
Q Consensus 334 ~~~~~~~~~l~~L~-~~~~~iiiVlN 358 (545)
..++.++++.+. +.+..+++|.+
T Consensus 437 --~~~i~~~l~~l~~~~g~tvi~vsH 460 (538)
T 1yqt_A 437 --RLAVSRAIRHLMEKNEKTALVVEH 460 (538)
T ss_dssp --HHHHHHHHHHHHHHHTCEEEEECS
T ss_pred --HHHHHHHHHHHHHhCCCEEEEEeC
Confidence 456677777775 45778888887
No 264
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.74 E-value=6e-09 Score=114.54 Aligned_cols=147 Identities=20% Similarity=0.247 Sum_probs=85.7
Q ss_pred cccccccccCc-------eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCC
Q 009050 188 LLTNSDFDAKP-------MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMP 260 (545)
Q Consensus 188 ~l~~~~~~~~~-------~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~ 260 (545)
.+++++|+... +++|+|+||||||||++.|+|...| .++... .+..+.+.++........++... +
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p---~~G~~~-~~~~i~~~~q~~~~~~~~tv~e~--~- 434 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP---DEGQDI-PKLNVSMKPQKIAPKFPGTVRQL--F- 434 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC---SBCCCC-CSCCEEEECSSCCCCCCSBHHHH--H-
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC---CCCcCc-cCCcEEEecccccccCCccHHHH--H-
Confidence 45566666544 5999999999999999999999854 222211 12233444443211111111000 0
Q ss_pred CCCcccccccchhhhhhhcCchhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCC
Q 009050 261 FSGLTTFGTAFLSKFECSQMPHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDP 330 (545)
Q Consensus 261 ~~gl~~~~~~~~~~~~~~~~~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~ 330 (545)
...+ ............+++.+.+.+ .|+.+| |++||+. +|++++.+|+++|+ .+|+
T Consensus 435 ~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~-------iAraL~~~p~lLlLDEPT~gLD~ 500 (608)
T 3j16_B 435 FKKI-------RGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVA-------IVLALGIPADIYLIDEPSAYLDS 500 (608)
T ss_dssp HHHC-------SSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHH-------HHHHTTSCCSEEEECCTTTTCCH
T ss_pred HHHh-------hcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-------HHHHHHhCCCEEEEECCCCCCCH
Confidence 0000 000000111223444444433 578888 7999999 99999999999988 4554
Q ss_pred CCCCccHHHHHHHHHHh-cCCCeEEEEec
Q 009050 331 HKLDISDEFKRVITSLR-GHDDKIRVVLN 358 (545)
Q Consensus 331 ~~~~~~~~~~~~l~~L~-~~~~~iiiVlN 358 (545)
.. ..++.++++.+. +.+..+++|.|
T Consensus 501 ~~---~~~i~~ll~~l~~~~g~tviivtH 526 (608)
T 3j16_B 501 EQ---RIICSKVIRRFILHNKKTAFIVEH 526 (608)
T ss_dssp HH---HHHHHHHHHHHHHHHTCEEEEECS
T ss_pred HH---HHHHHHHHHHHHHhCCCEEEEEeC
Confidence 32 456667777764 45788888888
No 265
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.74 E-value=6.6e-09 Score=99.12 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=53.1
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCCHH
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVDTQ 366 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~ 366 (545)
.+.++||+|...... .++ ..++.+++++|+.... ......... .+.|+++|+||+|+.+..
T Consensus 110 d~iiidt~G~~~~~~-----~~~---------~~~~~~i~vvd~~~~~--~~~~~~~~~---~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 110 DLLLIENVGNLICPV-----DFD---------LGENYRVVMVSVTEGD--DVVEKHPEI---FRVADLIVINKVALAEAV 170 (221)
T ss_dssp SEEEEEEEEBSSGGG-----GCC---------CSCSEEEEEEEGGGCT--THHHHCHHH---HHTCSEEEEECGGGHHHH
T ss_pred CEEEEeCCCCCCCCc-----hhc---------cccCcEEEEEeCCCcc--hhhhhhhhh---hhcCCEEEEecccCCcch
Confidence 678999999632110 111 2467889999987621 111122222 246889999999986431
Q ss_pred --HHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 367 --QLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 367 --~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+..++...+ ... .+..+.+++||++|.|+++
T Consensus 171 ~~~~~~~~~~~----~~~--~~~~~i~~~Sa~~g~gi~~ 203 (221)
T 2wsm_A 171 GADVEKMKADA----KLI--NPRAKIIEMDLKTGKGFEE 203 (221)
T ss_dssp TCCHHHHHHHH----HHH--CTTSEEEECBTTTTBTHHH
T ss_pred hhHHHHHHHHH----HHh--CCCCeEEEeecCCCCCHHH
Confidence 233333222 111 1223448999999999775
No 266
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.4e-08 Score=111.51 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=51.5
Q ss_pred chhhccCceeec----CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCC
Q 009050 281 PHSLLEHITLVD----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHD 350 (545)
Q Consensus 281 ~~~lL~~v~liD----TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~ 350 (545)
..++++.+.+-+ .++.+| |++||++ +|++++.+|+++|+ .+|+.. ...+.++++.+++.+
T Consensus 202 ~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~-------iAraL~~~p~llllDEPts~LD~~~---~~~l~~~l~~l~~~g 271 (608)
T 3j16_B 202 VKRYIKILQLENVLKRDIEKLSGGELQRFA-------IGMSCVQEADVYMFDEPSSYLDVKQ---RLNAAQIIRSLLAPT 271 (608)
T ss_dssp HHHHHHHHTCTGGGGSCTTTCCHHHHHHHH-------HHHHHHSCCSEEEEECTTTTCCHHH---HHHHHHHHHGGGTTT
T ss_pred HHHHHHHcCCcchhCCChHHCCHHHHHHHH-------HHHHHHhCCCEEEEECcccCCCHHH---HHHHHHHHHHHHhCC
Confidence 344555555532 578888 8999999 89999999998887 344432 345677888887778
Q ss_pred CeEEEEecCCC
Q 009050 351 DKIRVVLNKAD 361 (545)
Q Consensus 351 ~~iiiVlNK~D 361 (545)
..+++|.|..+
T Consensus 272 ~tvi~vtHdl~ 282 (608)
T 3j16_B 272 KYVICVEHDLS 282 (608)
T ss_dssp CEEEEECSCHH
T ss_pred CEEEEEeCCHH
Confidence 88888888644
No 267
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.70 E-value=8.9e-09 Score=106.95 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=48.3
Q ss_pred ccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhh
Q 009050 195 DAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSK 274 (545)
Q Consensus 195 ~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~ 274 (545)
..+..|+|+|.||||||||+|+|+|.. ..+++.|+||........ .+++..+ . ++..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~---~~~~~~p~tTi~p~~g~v----~v~~~r~-----------~-----~l~~ 76 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQ---ASAENFPFCTIDPNESRV----PVPDERF-----------D-----FLCQ 76 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC----------------CCSEEEE----ECCCHHH-----------H-----HHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC---ccccCCCccccCceeEEE----EECCccc-----------e-----eecc
Confidence 344589999999999999999999987 466676666543211000 0111000 0 0000
Q ss_pred hhhhcCch-hhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCC
Q 009050 275 FECSQMPH-SLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK 332 (545)
Q Consensus 275 ~~~~~~~~-~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~ 332 (545)
...+. ..-..+.++||||+..+..+. +++.. .....++++|++++|+|+..
T Consensus 77 ---~~~p~~~~~~~i~lvDtpGl~~~as~~--~glg~--~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 77 ---YHKPASKIPAFLNVVDIAGLVKGAHNG--QGLGN--AFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ---HHCCSEEECCEEEEEECCC-------------CC--HHHHHHHTSSSEEEEEEC--
T ss_pred ---ccCcccccccccEEEECCCcccccchh--hHHHH--HHHHHHHhcCeEEEEEecCC
Confidence 00000 011368999999998643321 11111 23456799999999999974
No 268
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.66 E-value=7.1e-09 Score=114.40 Aligned_cols=72 Identities=19% Similarity=0.304 Sum_probs=45.4
Q ss_pred CceeecCCCCCCh--------hhhhhhhccChHHHHHHHhcCC-CEEEEEeCCCCCC-ccHHHHHHHHHHhcCCCeEEEE
Q 009050 287 HITLVDTPGVLSG--------EKQRTQRAYDFTGVTSWFAAKC-DLILLLFDPHKLD-ISDEFKRVITSLRGHDDKIRVV 356 (545)
Q Consensus 287 ~v~liDTPG~~sg--------ekq~v~~~~~~~~ia~~~~~~a-DliLlvlD~~~~~-~~~~~~~~l~~L~~~~~~iiiV 356 (545)
.+.|+|.||+... .++. ...+++.++.+. .++++++++.. + ......++++.+...+.++++|
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~------i~~li~~~l~~~~~iil~vvt~~~-d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYK------IKTLIKKYIQRQETISLVVVPSNV-DIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHH------HHHHHHHHTTSSSCCEEEEEESSS-CTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred ceeEeeCCCccccccCCCCHHHHHH------HHHHHHHHHhcCCCCceEEEeccc-hhccHHHHHHHHHHhhcCCceEEE
Confidence 5889999987641 1111 122566666655 45555555432 2 2345678888888888999999
Q ss_pred ecCCCCCCH
Q 009050 357 LNKADQVDT 365 (545)
Q Consensus 357 lNK~D~~~~ 365 (545)
+||.|+++.
T Consensus 221 lTK~Dlv~~ 229 (608)
T 3szr_A 221 LTKPDLVDK 229 (608)
T ss_dssp EECGGGSSS
T ss_pred ecchhhcCc
Confidence 999999864
No 269
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.65 E-value=1.4e-08 Score=116.16 Aligned_cols=173 Identities=15% Similarity=0.162 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHHHHHhhc----------------cCceeeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHH
Q 009050 155 SSVTSIIDGLKRLYIQKL----------------KPLEVTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKH 216 (545)
Q Consensus 155 ~~~~~~id~l~~~~~~~l----------------~~l~~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~ 216 (545)
+..+.+++.+.+.+.... .....++.|++. .++++++|+..+ +++|+|+||||||||++.
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~yg~~--~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~ 480 (986)
T 2iw3_A 403 KKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAK--ILLNKTQLRLKRARRYGICGPNGCGKSTLMRA 480 (986)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCCCCCSSCSSSCEEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHH
T ss_pred hhHHHHHHHHHHHhccccccccccCccccccceeEEeeEEEEECCE--EeEecceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 445666676666543322 123456677763 489999988776 999999999999999999
Q ss_pred HHcccCCCCCCCCCCcccceEEEEeCCCc-cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCceee----
Q 009050 217 LLRTSYPGAHIGPEPTTDRFVVVMSGVDD-RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHITLV---- 291 (545)
Q Consensus 217 Llg~~~p~~~v~~~p~t~r~~i~~~~~~~-~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~li---- 291 (545)
|+|..+.| .+......+++..++. ...+..++.......+.+. ......+|+.+.|.
T Consensus 481 LagG~i~g-----~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~-------------~~~v~~~L~~lgL~~~~~ 542 (986)
T 2iw3_A 481 IANGQVDG-----FPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGT-------------KEAIKDKLIEFGFTDEMI 542 (986)
T ss_dssp HHHTCSTT-----CCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSC-------------HHHHHHHHHHTTCCHHHH
T ss_pred HhCCCcCC-----CccccceeEEEEcccccccccCCcHHHHHHHhhcCH-------------HHHHHHHHHHcCCChhhh
Confidence 99644311 1111111233333321 1222222210000000000 12233445555552
Q ss_pred c-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 292 D-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 292 D-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
| .++.+| |++||+. ++++++.+|+++|+ .+|+.. ...+.+++.. .+..+++|.|..
T Consensus 543 ~~~~~~LSGGqkQRva-------LArAL~~~P~lLLLDEPTs~LD~~~---~~~l~~~L~~---~g~tvIivSHdl 605 (986)
T 2iw3_A 543 AMPISALSGGWKMKLA-------LARAVLRNADILLLDEPTNHLDTVN---VAWLVNYLNT---CGITSITISHDS 605 (986)
T ss_dssp HSBGGGCCHHHHHHHH-------HHHHHHTTCSEEEEESTTTTCCHHH---HHHHHHHHHH---SCSEEEEECSCH
T ss_pred cCCcccCCHHHHHHHH-------HHHHHhcCCCEEEEECCccCCCHHH---HHHHHHHHHh---CCCEEEEEECCH
Confidence 2 467788 8999998 89999999999988 444432 3344445544 567788887753
No 270
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=98.65 E-value=5.7e-08 Score=81.23 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=65.3
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
...+|+++...+++.|+.+|.|++|+|+.++.+.+|...| ++.+.+.+++..+|.|++|.++.+||+..|
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~m 98 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLL 98 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHHh
Confidence 3579999999999999999999999999999999999876 788999999999999999999999998765
No 271
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.64 E-value=5.2e-08 Score=116.50 Aligned_cols=173 Identities=18% Similarity=0.234 Sum_probs=97.6
Q ss_pred eeeEEeCCc-ccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCC------CcccceEEEEeCC
Q 009050 176 EVTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPE------PTTDRFVVVMSGV 243 (545)
Q Consensus 176 ~~~~~~~~~-~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~------p~t~r~~i~~~~~ 243 (545)
.+++.|... ..+++++++|..++ .|+|+|++|||||||++.|+|.-.| |.+ +++. ...-|..+.+..|
T Consensus 420 nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q 499 (1321)
T 4f4c_A 420 NVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQ 499 (1321)
T ss_dssp EEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECS
T ss_pred EeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCC
Confidence 455667532 24689999999888 9999999999999999999998854 111 1111 1112345666666
Q ss_pred CccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCc-----eee-cCCCCCC-hhhhhhhhccChHHHHHH
Q 009050 244 DDRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI-----TLV-DTPGVLS-GEKQRTQRAYDFTGVTSW 316 (545)
Q Consensus 244 ~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v-----~li-DTPG~~s-gekq~v~~~~~~~~ia~~ 316 (545)
++-...|+-+. +..+ |........+..-......++.+..+ +.+ +--..+| |+|||++ +||+
T Consensus 500 ~~~Lf~~TI~e---NI~~-g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRia-------iARA 568 (1321)
T 4f4c_A 500 EPALFNCTIEE---NISL-GKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIA-------IARA 568 (1321)
T ss_dssp SCCCCSEEHHH---HHHT-TCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHH-------HHHH
T ss_pred cceeeCCchhH---HHhh-hcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHH-------HHHH
Confidence 55554443221 0001 10000000000000001111111111 122 2222355 7999999 9999
Q ss_pred HhcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCC
Q 009050 317 FAAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (545)
Q Consensus 317 ~~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~ 363 (545)
++.+|+++|+ .+|+.. ...+.+.+..+.+ ++++++|.|....+
T Consensus 569 l~~~~~IliLDE~tSaLD~~t---e~~i~~~l~~~~~-~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 569 LVRNPKILLLDEATSALDAES---EGIVQQALDKAAK-GRTTIIIAHRLSTI 616 (1321)
T ss_dssp HTTCCSEEEEESTTTTSCTTT---HHHHHHHHHHHHT-TSEEEEECSCTTTT
T ss_pred HccCCCEEEEecccccCCHHH---HHHHHHHHHHHhC-CCEEEEEcccHHHH
Confidence 9999999999 567653 3455566666553 67888888875543
No 272
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=98.64 E-value=5e-08 Score=79.78 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.+|+++...+..+|..+|.|++|+|+.++.+.++...|++...+..+|..+|.+++|.++.+||+.+|+
T Consensus 20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~ 88 (91)
T 2pmy_A 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFL 88 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEECHHHHTHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999988765
No 273
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.63 E-value=2.5e-08 Score=103.78 Aligned_cols=109 Identities=14% Similarity=0.168 Sum_probs=63.3
Q ss_pred ccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccchhh
Q 009050 195 DAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFLSK 274 (545)
Q Consensus 195 ~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~ 274 (545)
..+..|+|+|+||||||||+|+|+|... +.+++.|+|+.......- .++|.. + ..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~--a~~~~~p~tTi~p~~G~v----~v~~~r-----------~--------~~ 72 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVL--GNPANYPYATIDPEEAKV----AVPDER-----------F--------DW 72 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTT--TSTTCCSSCCCCTTEEEE----EECCHH-----------H--------HH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc--ccccCCCceeecceeeee----eeCCcc-----------h--------hh
Confidence 4456999999999999999999999885 588888877653211000 001000 0 00
Q ss_pred hhhhcCchhhc-cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCC
Q 009050 275 FECSQMPHSLL-EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHK 332 (545)
Q Consensus 275 ~~~~~~~~~lL-~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~ 332 (545)
......+.... ..+.++||||+..+... .+.+. ......+..+|.+++++|+..
T Consensus 73 l~~~~~~~~~v~~~i~lvD~pGl~~~~s~--~e~L~--~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 73 LCEAYKPKSRVPAFLTVFDIAGLTKGAST--GVGLG--NAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHCCSEEECEEEEEECTGGGCCCCCS--SSSSC--HHHHHHHTTCSEEEEEEECCC
T ss_pred hhhhcccccccCcceEEEeccccccCCcH--HHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence 00000011111 25789999998763211 11110 012345789999999999864
No 274
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.62 E-value=2.3e-08 Score=119.23 Aligned_cols=169 Identities=17% Similarity=0.230 Sum_probs=92.5
Q ss_pred eeEEeCCc-ccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCC------CcccceEEEEeCCC
Q 009050 177 VTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPE------PTTDRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~-~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~------p~t~r~~i~~~~~~ 244 (545)
+++.|... ..+++++++|+.++ +++|+|++|||||||++.|+|...| |.+ +.+. +..-+..+.+.+|+
T Consensus 393 v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~ 472 (1284)
T 3g5u_A 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQE 472 (1284)
T ss_dssp EEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSS
T ss_pred EEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCC
Confidence 45566532 23589999999887 9999999999999999999998754 111 1111 11123346666776
Q ss_pred ccccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCc-----eeec-CCCCCC-hhhhhhhhccChHHHHHHH
Q 009050 245 DRSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHI-----TLVD-TPGVLS-GEKQRTQRAYDFTGVTSWF 317 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v-----~liD-TPG~~s-gekq~v~~~~~~~~ia~~~ 317 (545)
+...+++.. .+-.+ |........+.........++.+..+ +.++ .+..+| |++||++ +||++
T Consensus 473 ~~l~~~ti~-eNi~~---g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qria-------iARal 541 (1284)
T 3g5u_A 473 PVLFATTIA-ENIRY---GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIA-------IARAL 541 (1284)
T ss_dssp CCCCSSCHH-HHHHH---HCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHH-------HHHHH
T ss_pred CccCCccHH-HHHhc---CCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHH-------HHHHH
Confidence 655555222 11100 00000000000000011111111111 1111 233566 8999999 99999
Q ss_pred hcCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 318 AAKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 318 ~~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
+.+|+++|+ .+|+.. ...+.+.++.+. .+..+++|.|..
T Consensus 542 ~~~p~iliLDEpts~LD~~~---~~~i~~~l~~~~-~~~t~i~itH~l 585 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTES---EAVVQAALDKAR-EGRTTIVIAHRL 585 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHH---HHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred hcCCCEEEEECCCCCCCHHH---HHHHHHHHHHHc-CCCEEEEEecCH
Confidence 999999888 344321 233444455444 367888887763
No 275
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.61 E-value=3.2e-08 Score=118.23 Aligned_cols=175 Identities=20% Similarity=0.268 Sum_probs=95.1
Q ss_pred eeEEeCCc-ccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC------CCC-CCcccceEEEEeCCC
Q 009050 177 VTYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH------IGP-EPTTDRFVVVMSGVD 244 (545)
Q Consensus 177 ~~~~~~~~-~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~------v~~-~p~t~r~~i~~~~~~ 244 (545)
+++.|... ..+++++++|+.++ +|+|||++|||||||++.|+|...| |.+ +.. ....-|..+.+.+|+
T Consensus 1082 Vsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qd 1161 (1321)
T 4f4c_A 1082 VRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQE 1161 (1321)
T ss_dssp EEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSS
T ss_pred EEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCC
Confidence 45566432 23589999999988 9999999999999999999998754 111 111 112235556677777
Q ss_pred ccccCCceeEeecCCCCCCccc--ccccchhhhhhhcCchhhccCce-eecCC-----CCCC-hhhhhhhhccChHHHHH
Q 009050 245 DRSIPGNTVAVQADMPFSGLTT--FGTAFLSKFECSQMPHSLLEHIT-LVDTP-----GVLS-GEKQRTQRAYDFTGVTS 315 (545)
Q Consensus 245 ~~~~~g~t~~~~~~~~~~gl~~--~~~~~~~~~~~~~~~~~lL~~v~-liDTP-----G~~s-gekq~v~~~~~~~~ia~ 315 (545)
+...+|+-+.. ..+ |+.. ..+..+..-......++....+- =.||+ ..+| ||+||++ +||
T Consensus 1162 p~LF~gTIreN---I~~-gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQria-------iAR 1230 (1321)
T 4f4c_A 1162 PTLFDCSIAEN---IIY-GLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIA-------IAR 1230 (1321)
T ss_dssp CCCCSEEHHHH---HSS-SSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHH-------HHH
T ss_pred CEeeCccHHHH---Hhc-cCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHH-------HHH
Confidence 66666643311 000 1100 00000000000000111111100 01221 2345 8999999 999
Q ss_pred HHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc--CCCeEEEEecCCCCC
Q 009050 316 WFAAKCDLILLLFDPHKLDISDEFKRVITSLRG--HDDKIRVVLNKADQV 363 (545)
Q Consensus 316 ~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~--~~~~iiiVlNK~D~~ 363 (545)
+++++|+++|+-=-.+.+|. +....+.+.+++ .++++++|.|+...+
T Consensus 1231 Allr~~~ILiLDEaTSaLD~-~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A 1231 ALVRNPKILLLDEATSALDT-ESEKVVQEALDRAREGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp HHHSCCSEEEEESCCCSTTS-HHHHHHHHHHTTTSSSSEEEEECSSSSTT
T ss_pred HHHhCCCEEEEeCccccCCH-HHHHHHHHHHHHHcCCCEEEEeccCHHHH
Confidence 99999998887211111221 122334444543 367899999976654
No 276
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=98.60 E-value=1.3e-07 Score=75.94 Aligned_cols=69 Identities=16% Similarity=0.334 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN-LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~-L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.+|+++...+..+|..+|.+++|+|+.++.+.++...| ++...+..+|..+|.+++|.++.+||..+|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 73 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFAR 73 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 57999999999999999999999999999999998877 8899999999999999999999999987764
No 277
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.59 E-value=4.2e-08 Score=116.99 Aligned_cols=172 Identities=15% Similarity=0.207 Sum_probs=93.8
Q ss_pred eEEeCCc-ccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC--CCC-CCCCC------cccceEEEEeCCCc
Q 009050 178 TYRFNDF-VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP--GAH-IGPEP------TTDRFVVVMSGVDD 245 (545)
Q Consensus 178 ~~~~~~~-~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p--~~~-v~~~p------~t~r~~i~~~~~~~ 245 (545)
++.|... ..+++++++|+.++ +|+|+|++|||||||++.|+|...| |.+ +.+.+ ..-|..+.+.+|++
T Consensus 1037 ~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 1116 (1284)
T 3g5u_A 1037 VFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP 1116 (1284)
T ss_dssp EBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSC
T ss_pred EEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCC
Confidence 3445432 13589999999887 9999999999999999999998865 111 11111 11233455556655
Q ss_pred cccCCceeEeecCCCCCCcccccccchhhhhhhcCchhhccCce-eecC-----CCCCC-hhhhhhhhccChHHHHHHHh
Q 009050 246 RSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHSLLEHIT-LVDT-----PGVLS-GEKQRTQRAYDFTGVTSWFA 318 (545)
Q Consensus 246 ~~~~g~t~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~lL~~v~-liDT-----PG~~s-gekq~v~~~~~~~~ia~~~~ 318 (545)
...+++.. .+..+.... .......+.........++.+..+. =.|| ...+| |++||+. +||+++
T Consensus 1117 ~l~~~ti~-eNi~~~~~~-~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~-------iARal~ 1187 (1284)
T 3g5u_A 1117 ILFDCSIA-ENIAYGDNS-RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA-------IARALV 1187 (1284)
T ss_dssp CCCSSBHH-HHHTCCCSS-CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHH-------HHHHHH
T ss_pred ccccccHH-HHHhccCCC-CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHH-------HHHHHH
Confidence 44443221 111000000 0000000000000011112221110 0122 34567 8999999 999999
Q ss_pred cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCC
Q 009050 319 AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQ 362 (545)
Q Consensus 319 ~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~ 362 (545)
.+|+++|+ .+|+.. ...+.+.++.+. .+..+++|.|..+.
T Consensus 1188 ~~p~iLiLDEpTs~lD~~~---~~~i~~~l~~~~-~~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A 1188 RQPHILLLDEATSALDTES---EKVVQEALDKAR-EGRTCIVIAHRLST 1232 (1284)
T ss_dssp HCCSSEEEESCSSSCCHHH---HHHHHHHHHHHS-SSSCEEEECSCTTG
T ss_pred cCCCEEEEeCCcccCCHHH---HHHHHHHHHHhC-CCCEEEEEecCHHH
Confidence 99999888 344432 344555665544 47789999996654
No 278
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=98.58 E-value=1.6e-07 Score=75.25 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
-.+|+++...+..+|..+|.+++|+|+.++...++...| ++...+..++..+|.+++|.++.+||+.+|.-
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 78 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLE 78 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHHSSSSCSEEEHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 468999999999999999999999999999999999877 78999999999999999999999999887753
No 279
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=98.54 E-value=1.5e-07 Score=73.77 Aligned_cols=68 Identities=18% Similarity=0.370 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
||+++...+..+|..+|++++|+|+.++.+.++...| ++...+..++..+|.+++|.++.+||+.+|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 70 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMT 70 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHHCCSSSSEEEHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 6899999999999999999999999999999998876 6788999999999999999999999988775
No 280
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.53 E-value=5.9e-08 Score=108.46 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=47.4
Q ss_pred CCCCCC-hhhhhhhhccChHHHHHHHhcCCC--EEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCC
Q 009050 293 TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD--LILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKAD 361 (545)
Q Consensus 293 TPG~~s-gekq~v~~~~~~~~ia~~~~~~aD--liLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D 361 (545)
.|+.+| ||+||+. +|++++.+|+ ++|+ .+|+.. ...+.++++.+++.+..+++|.|..+
T Consensus 199 ~~~~LSGGe~QRv~-------iArAL~~~p~~~lLlLDEPtsgLD~~~---~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 199 SAGTLSGGEAQRIR-------LATQIGSRLTGVLYVLDEPSIGLHQRD---NDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp BGGGSCHHHHHHHH-------HHHHHHTCCCSCEEEEECTTTTCCGGG---HHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CcccCCHHHHHHHH-------HHHHHhhCCCCCEEEEECCccCCCHHH---HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 467788 7999999 8999999988 8887 566653 56788888888877888998888643
No 281
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.53 E-value=1.6e-07 Score=94.54 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=45.4
Q ss_pred CceeecCCCCCCh--------hhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcC-CCeEEEEe
Q 009050 287 HITLVDTPGVLSG--------EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGH-DDKIRVVL 357 (545)
Q Consensus 287 ~v~liDTPG~~sg--------ekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~-~~~iiiVl 357 (545)
.+.++||+|.... .++++ .++++++..|+.+++++|+.. ..+..+.+..+.+. +. .++++
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~-------~iaRal~~~P~~~lLvLDa~t---~~~~~~~~~~~~~~~~~-t~iiv 254 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKR-------AIAKADPEEPKEVWLVLDAVT---GQNGLEQAKKFHEAVGL-TGVIV 254 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHH-------HHHHHCTTCCSEEEEEEETTB---CTHHHHHHHHHHHHHCC-SEEEE
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHH-------HHHHhhcCCCCeEEEEEcHHH---HHHHHHHHHHHHHHcCC-cEEEE
Confidence 4568999998641 22222 267888899999999999875 34555666666543 44 46677
Q ss_pred cCCCCCC
Q 009050 358 NKADQVD 364 (545)
Q Consensus 358 NK~D~~~ 364 (545)
||.|...
T Consensus 255 Th~d~~a 261 (304)
T 1rj9_A 255 TKLDGTA 261 (304)
T ss_dssp ECTTSSC
T ss_pred ECCcccc
Confidence 8888754
No 282
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=98.53 E-value=3e-07 Score=74.64 Aligned_cols=70 Identities=19% Similarity=0.350 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
.+|+++...+..+|..+|++++|+|+.++...++...| ++...+..++..+|.+++|.++.+||+.+|.-
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~dg~i~~~eF~~~~~~ 84 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVR 84 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 38999999999999999999999999999999999877 67999999999999999999999999887753
No 283
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.49 E-value=2.5e-08 Score=91.78 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=41.2
Q ss_pred CceeecCCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE-----EeCCCCC-----C--------ccHHHHHHHHHHh
Q 009050 287 HITLVDTPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL-----LFDPHKL-----D--------ISDEFKRVITSLR 347 (545)
Q Consensus 287 ~v~liDTPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl-----vlD~~~~-----~--------~~~~~~~~l~~L~ 347 (545)
...++|.++..+ +++|++. +|++++.+++++++ .+|+... . ...++.+++..++
T Consensus 74 ~~~~~~~~~~~s~g~~qrv~-------iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~ 146 (171)
T 4gp7_A 74 KLTVVDATNVQESARKPLIE-------MAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQ 146 (171)
T ss_dssp CCEEEESCCCSHHHHHHHHH-------HHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHH
T ss_pred CeEEEECCCCCHHHHHHHHH-------HHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHH
Confidence 345667666666 6788887 88999888887777 3333210 0 1133344444455
Q ss_pred cCCCeEEEEecC
Q 009050 348 GHDDKIRVVLNK 359 (545)
Q Consensus 348 ~~~~~iiiVlNK 359 (545)
+.|..++++.|.
T Consensus 147 ~~g~tvi~vtH~ 158 (171)
T 4gp7_A 147 REGFRYVYILNS 158 (171)
T ss_dssp HHTCSEEEEECS
T ss_pred hcCCcEEEEeCC
Confidence 557889998884
No 284
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.48 E-value=8e-08 Score=95.81 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccce
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRF 236 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~ 236 (545)
..|+++|.||+|||||+|+|+|... ..+++.|.||+.
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~--~~~~~~~g~T~~ 157 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI--AKTGDRPGITTS 157 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC--C-----------
T ss_pred ceEEEEecCCCchHHHHHHHhcCce--eecCCCCCeeee
Confidence 4799999999999999999999987 778887766543
No 285
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=98.46 E-value=6.7e-08 Score=77.04 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC----CCHHHHHH----HHHHhcCCCCCCCCHHHHHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN----LSRQDLKQ----VWAIADAKRQGYLGYREFIAAMQLIS 81 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~----L~~~~L~~----Iw~l~D~~~~g~L~~~eF~~am~Li~ 81 (545)
||+++...+..+|..+|.+++|+|+.++...++...| ++.+.+.. +|..+|.+++|.++.+||+.++.-+-
T Consensus 1 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~~~~~~~ 79 (83)
T 1yx7_A 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAELL 79 (83)
T ss_dssp CCSCSCTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHhhHHHH
Confidence 5677788899999999999999999999999998877 78888999 99999999999999999997776553
No 286
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=98.43 E-value=6.3e-07 Score=72.84 Aligned_cols=69 Identities=23% Similarity=0.363 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
+++++...+..+|..+|++++|+|+.++...++...| ++.+.+..+|..+|.+++|.++.+||+.+|.-
T Consensus 3 ~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~~~~~ 73 (92)
T 2kn2_A 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMT 73 (92)
T ss_dssp CCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence 5678889999999999999999999999999999987 88999999999999999999999999877653
No 287
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.41 E-value=2.7e-07 Score=98.07 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=27.7
Q ss_pred cccccccCc--eEEEEcCCCCChHHHHHHHHcccC
Q 009050 190 TNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSY 222 (545)
Q Consensus 190 ~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~ 222 (545)
++++|.... +++|+|++|||||||++.|+|...
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 456666554 999999999999999999999763
No 288
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.39 E-value=2.1e-06 Score=90.31 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=45.9
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHH-HHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCC
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVT-SWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia-~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~ 364 (545)
..+.|+||||.+......... +. ...+..||.+++|+|+.. ..........+.+.-....+|+||+|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~e------l~~i~~~~~pd~vlLVvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEE------MKQISNVIHPHEVILVIDGTI---GQQAYNQALAFKEATPIGSIIVTKLDGSA 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHH------HHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHSCTTEEEEEECCSSCS
T ss_pred CCEEEEECCCcccchHHHHHH------HHHHHHhhcCceEEEEEeCCC---chhHHHHHHHHHhhCCCeEEEEECCCCcc
Confidence 378899999987622111110 11 112457999999999975 23344455556554456678999999986
Q ss_pred HH
Q 009050 365 TQ 366 (545)
Q Consensus 365 ~~ 366 (545)
..
T Consensus 254 ~g 255 (443)
T 3dm5_A 254 KG 255 (443)
T ss_dssp SH
T ss_pred cc
Confidence 43
No 289
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.35 E-value=8e-08 Score=107.40 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=43.1
Q ss_pred CCCCCC-hhhhhhhhccChHHHHHHHhcCCC---EEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 293 TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCD---LILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 293 TPG~~s-gekq~v~~~~~~~~ia~~~~~~aD---liLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
.|+.+| ||+||+. +|++++.+|+ ++|+ .+|+. ...++.++++.+++.+..+++|.|.
T Consensus 540 ~~~~LSgG~~qrv~-------iAraL~~~p~~p~llllDEPt~~LD~~---~~~~i~~~l~~l~~~g~tvi~vtHd 605 (670)
T 3ux8_A 540 PATTLSGGEAQRVK-------LAAELHRRSNGRTLYILDEPTTGLHVD---DIARLLDVLHRLVDNGDTVLVIEHN 605 (670)
T ss_dssp CGGGCCHHHHHHHH-------HHHHHHSCCCSCEEEEEESTTTTCCHH---HHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CchhCCHHHHHHHH-------HHHHHhhCCCCCcEEEEeCCCCCCCHH---HHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467788 7999999 8999988774 6666 34443 2456778888887778899999884
No 290
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=98.35 E-value=1.4e-06 Score=69.89 Aligned_cols=70 Identities=6% Similarity=0.120 Sum_probs=64.1
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHH---HHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQD---LKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~---L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.-.+|+++...+...|..+|.+++|+|+..+...++...| ++... +.+++..+|.+++|.++. ||+.+|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~d~~~~g~i~~-eF~~~~~ 79 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPE-EWLTLCS 79 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCSSCSSCCBCTT-HHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCCCcCCH-HHHHHHH
Confidence 3458999999999999999999999999999999999877 67888 999999999999999999 9987764
No 291
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.34 E-value=5.8e-07 Score=97.99 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=22.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcccC
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTSY 222 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~~ 222 (545)
+|+|+|+||+|||||+|+|+|...
T Consensus 40 ~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 40 VVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEECCCCCCHHHHHHhHcCCCC
Confidence 799999999999999999999874
No 292
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.32 E-value=2.6e-07 Score=105.80 Aligned_cols=47 Identities=21% Similarity=0.472 Sum_probs=37.4
Q ss_pred eeEEeCCcccCcccccccccCc--eEEEEcCCCCChHHHHHHHHcccCC
Q 009050 177 VTYRFNDFVSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYP 223 (545)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p 223 (545)
+++.|++...+++++++|...+ +++|+|+||||||||++.|+|...|
T Consensus 677 Ls~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P 725 (986)
T 2iw3_A 677 MEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725 (986)
T ss_dssp EEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC
T ss_pred eEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3445643223578999988766 9999999999999999999998854
No 293
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.31 E-value=3.3e-07 Score=90.36 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccc
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDR 235 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r 235 (545)
..++++|.+|+|||||+|+|+|... ..+++.|.+|+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~--~~~~~~~g~T~ 135 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA--SSVGAQPGITK 135 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------C
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc--cccCCCCCCcc
Confidence 5899999999999999999999886 56666555443
No 294
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.29 E-value=4.9e-07 Score=91.98 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=42.0
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCC
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~ 364 (545)
.+.++||+|.......... . ...+++. -.+|-.++++|+.. ..+..+.++.+.+.-....+++||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~-e--L~~i~ra--l~~de~llvLDa~t---~~~~~~~~~~~~~~~~it~iilTKlD~~a 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMD-E--MKKIARV--TKPNLVIFVGDALA---GNAIVEQARQFNEAVKIDGIILTKLDADA 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHH-H--HHHHHHH--HCCSEEEEEEEGGG---TTHHHHHHHHHHHHSCCCEEEEECGGGCS
T ss_pred hhhHHhhccchhHHHHHHH-H--HHHHHHH--hcCCCCEEEEecHH---HHHHHHHHHHHHHhcCCCEEEEeCcCCcc
Confidence 5678999998652111111 1 1113333 35889999999875 34555666666543234467889999754
No 295
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.29 E-value=7.8e-07 Score=89.50 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccC
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSY 222 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~ 222 (545)
.+++|+|++||||||+++.|+|...
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3999999999999999999999863
No 296
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=98.28 E-value=2.1e-06 Score=64.88 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=55.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 19 YLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 19 y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+..+|..+|++++|+|+.++...++...| ++.+.+..++..+|.+++|.++.+||..+|.
T Consensus 3 l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~ 64 (67)
T 1tiz_A 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIE 64 (67)
T ss_dssp HHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 57899999999999999999999999876 7899999999999999999999999987764
No 297
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=98.27 E-value=3.1e-06 Score=75.64 Aligned_cols=72 Identities=15% Similarity=0.287 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHHhhhCCCC-CCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 9 GSCSKDHQKIYLEWFNYADSDG-DGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~-~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
-.+|+++.+.+..+|..+|.++ +|.|+.++...++...| ++...+..+|..+|.+++|.++.+||..++...
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~eF~~~~~~~ 84 (161)
T 1dtl_A 10 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRS 84 (161)
T ss_dssp GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH
Confidence 4589999999999999999999 99999999999999877 789999999999999999999999999888765
No 298
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=98.26 E-value=6.9e-07 Score=68.57 Aligned_cols=63 Identities=27% Similarity=0.376 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
....+..+|..+|++++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||+.+|
T Consensus 4 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 68 (71)
T 2b1u_A 4 GLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARML 68 (71)
T ss_dssp THHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCHHHHHHHHHHCCSSSSSEEETTHHHHHH
T ss_pred cHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 456789999999999999999999999998876 889999999999999999999999998765
No 299
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=98.25 E-value=2.6e-06 Score=69.97 Aligned_cols=65 Identities=25% Similarity=0.440 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 14 DHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
...+.+..+|..+|.+++|+|+.++.+.++...| ++.+.+.++|..+|.+++|.++.+||+.+|.
T Consensus 26 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~ 92 (94)
T 2kz2_A 26 DSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 92 (94)
T ss_dssp SCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 3566789999999999999999999999998876 7899999999999999999999999987764
No 300
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.23 E-value=1.9e-06 Score=88.64 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=41.6
Q ss_pred CceeecCCCCCCh--------hhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhc-CCCeEEEEe
Q 009050 287 HITLVDTPGVLSG--------EKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRG-HDDKIRVVL 357 (545)
Q Consensus 287 ~v~liDTPG~~sg--------ekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~-~~~~iiiVl 357 (545)
...++||.|...- .+|++. ++++++.+|+-+++++|++. +. +....+..+.+ .+.. ++++
T Consensus 242 d~~lldt~Gl~~~~~~~~~eLSkqr~~-------iaral~~~P~e~lLvLDptt-gl--D~~~~~~~~~~~~g~t-~iii 310 (359)
T 2og2_A 242 DVVLCDTSGRLHTNYSLMEELIACKKA-------VGKIVSGAPNEILLVLDGNT-GL--NMLPQAREFNEVVGIT-GLIL 310 (359)
T ss_dssp SEEEEECCCCSSCCHHHHHHHHHHHHH-------HHHHSTTCCSEEEEEEEGGG-GG--GGHHHHHHHHHHTCCC-EEEE
T ss_pred HHHHHHhcCCChhhhhHHHHHHHHHHH-------HHHHHhcCCCceEEEEcCCC-CC--CHHHHHHHHHHhcCCe-EEEE
Confidence 3578999998651 123333 77888899998888999764 21 12233344443 3444 4567
Q ss_pred cCCCCCC
Q 009050 358 NKADQVD 364 (545)
Q Consensus 358 NK~D~~~ 364 (545)
+|.|...
T Consensus 311 ThlD~~~ 317 (359)
T 2og2_A 311 TKLDGSA 317 (359)
T ss_dssp ESCTTCS
T ss_pred ecCcccc
Confidence 7788764
No 301
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=98.23 E-value=3.9e-06 Score=74.74 Aligned_cols=75 Identities=15% Similarity=0.273 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhhC-CCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 6 GPIGSCSKDHQKIYLEWFNYAD-SDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 6 ~~~~~ls~~e~~~y~~~F~~~d-~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
++.-.+|+++...+..+|..+| .+++|.|+.++...++...| ++...+..+|..+|.+++|.++.+||+.++...
T Consensus 2 ~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~ 79 (158)
T 2jnf_A 2 GDVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARF 79 (158)
T ss_dssp CCSTTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCSCSHHHHHHHHHHHCTTCCSEECHHHHHHHHHHH
T ss_pred cchhhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4556799999999999999999 99999999999999998876 788999999999999999999999999887644
No 302
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=98.22 E-value=4.7e-06 Score=74.27 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=67.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 7 PIGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 7 ~~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
..-.+|+++...+..+|..+|.+++|+|+-++...++...| ++...+..+|..+|.+++|.++.+||..++.-.
T Consensus 13 ~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 88 (161)
T 3fwb_A 13 LNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEK 88 (161)
T ss_dssp TTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSCEEHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCeEeHHHHHHHHHHH
Confidence 34569999999999999999999999999999999999876 788999999999999999999999998887643
No 303
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=98.21 E-value=8.7e-07 Score=70.13 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC---CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN---LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~---L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+.....+. +|..+|.+++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||+.+|.
T Consensus 5 ~~~~~~l~-~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 72 (81)
T 1c7v_A 5 DDEEEILR-AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIK 72 (81)
T ss_dssp --CHHHHH-HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHHHHH
T ss_pred ccHHHHHH-HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45567788 99999999999999999999998877 8899999999999999999999999987764
No 304
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.21 E-value=3.4e-06 Score=80.32 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcccC
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTSY 222 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~~ 222 (545)
+.|+|+|.+|||||||+|.|++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998753
No 305
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=98.20 E-value=3.9e-06 Score=70.42 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+++...+..+|..+|++++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||+.+|.
T Consensus 28 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~i~~~eF~~~~~ 95 (107)
T 2d58_A 28 PSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMML 95 (107)
T ss_dssp HHHHHHHHHHHTTSCCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 78889999999999999999999999999999887 7899999999999999999999999987653
No 306
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=98.20 E-value=3.5e-06 Score=73.81 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.+|+++.+.+..+|..+|.+++|.|+.++...++...| ++...+..+|..+|.+++|.++.+||..++.-.
T Consensus 4 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 76 (147)
T 4ds7_A 4 NLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQ 76 (147)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHh
Confidence 58999999999999999999999999999999999876 788999999999999999999999999888644
No 307
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=98.20 E-value=6e-06 Score=67.07 Aligned_cols=73 Identities=10% Similarity=0.304 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-----c--CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL-----S--NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~-----s--~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~ 83 (545)
+++...+..+|..+| .+++| +|+.++.+.++.. . .++...+..++..+|.+++|.++.+||+.+|.-+..+
T Consensus 5 ~~~~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~~~ 84 (93)
T 1k2h_A 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVA 84 (93)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 355778999999999 79999 9999999999986 4 4899999999999999999999999999988766554
Q ss_pred hC
Q 009050 84 QD 85 (545)
Q Consensus 84 ~~ 85 (545)
..
T Consensus 85 ~~ 86 (93)
T 1k2h_A 85 CN 86 (93)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 308
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=98.20 E-value=2.1e-06 Score=67.37 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=56.9
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN-LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~-L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
+.+..+|..+|++++|+|+.++...++...| ++.+.+..+|..+|.+++|.++.+||+.+|.-
T Consensus 3 ~~l~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~ 66 (78)
T 1k9u_A 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFCNA 66 (78)
T ss_dssp CHHHHHHHHHCTTCSSEECHHHHHHHHHHHHTCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 3578899999999999999999999987765 89999999999999999999999999887753
No 309
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=98.20 E-value=2.6e-06 Score=75.05 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.+|+++.+.+..+|..+|++++|.|+.++...++...| ++...+..+|..+|.+++|.++.+||..++...
T Consensus 4 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 76 (153)
T 3ox6_A 4 SLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPK 76 (153)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCccCcHHHHHHHHHHH
Confidence 58999999999999999999999999999999999875 789999999999999999999999999887543
No 310
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=98.18 E-value=4.6e-06 Score=75.20 Aligned_cols=73 Identities=18% Similarity=0.324 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.-.+|++++..+.++|..+|.+++|.|+.++...++...| ++...+..+|..+|.+++|.++.+||..++.-.
T Consensus 19 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 93 (169)
T 3qrx_A 19 RVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAK 93 (169)
T ss_dssp -CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999876 588999999999999999999999999888754
No 311
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.18 E-value=1.1e-05 Score=84.87 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=54.6
Q ss_pred cCceeecCCCCCC--hhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCC
Q 009050 286 EHITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (545)
Q Consensus 286 ~~v~liDTPG~~s--gekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~ 363 (545)
..+.|+||||... ........ ...+.+ +..+|.+++|+|+.. ..+.....+.+.+.-....+|+||+|..
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~e---l~~i~~--~~~pd~vlLVlDa~~---gq~a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEE---MKEMYD--VLKPDDVILVIDASI---GQKAYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHH---HHHHHH--HHCCSEEEEEEEGGG---GGGGHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred CCEEEEECCCCccccCCHHHHHH---HHHHHH--hhCCcceEEEEeCcc---chHHHHHHHHHhcccCCcEEEEeccccc
Confidence 3678999999743 11111110 001112 337899999999975 2334455555554435678899999987
Q ss_pred CHHH-HHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 364 DTQQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 364 ~~~~-l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
..-. ...+.... ..|..|+|. |+++++
T Consensus 252 a~~G~als~~~~~-----------g~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 252 AKGGGALSAVVAT-----------GATIKFIGT--GEKIDE 279 (433)
T ss_dssp SCHHHHHHHHHHH-----------TCEEEEEEC--CSSSSC
T ss_pred ccchHHHHHHHHH-----------CCCEEEEEC--CCChHh
Confidence 5422 22222111 233367775 777765
No 312
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.17 E-value=3.2e-06 Score=73.86 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
|+++...+.++|..+|.+++|.|+.++...++...| ++...+..+|..+|.+++|.++.+||..+|.-
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 70 (142)
T 2bl0_C 1 GDDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGR 70 (142)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCeeeHHHHHHHHHH
Confidence 578899999999999999999999999999998766 77899999999999999999999999888765
No 313
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=98.16 E-value=3.7e-06 Score=77.26 Aligned_cols=67 Identities=21% Similarity=0.383 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
++++...+.++|..+|.|++|+|+-++...++...|++...+..++..+|.+++|.++.+||..+|.
T Consensus 34 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~~~D~d~~g~i~~~Ef~~~~~ 100 (180)
T 3mse_B 34 INNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFMAGCY 100 (180)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCCSEECHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999986653
No 314
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=98.16 E-value=2.2e-06 Score=64.78 Aligned_cols=59 Identities=22% Similarity=0.333 Sum_probs=53.7
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 20 LEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 20 ~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
..+|..+|.+++|+|+.++.+.++...| ++.+.+..+|..+|.+++|.++.+||..+|.
T Consensus 3 ~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~ 63 (66)
T 3li6_A 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63 (66)
T ss_dssp CHHHHHHCTTCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHT
T ss_pred HHHHHHHCCCCCCcccHHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 4689999999999999999999998765 7788999999999999999999999987764
No 315
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=98.15 E-value=5.6e-06 Score=69.14 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhhC-CCCC-CcccHHHHHHHHHh-------cCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHh
Q 009050 14 DHQKIYLEWFNYAD-SDGD-GRITGNDATKFFAL-------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQ 84 (545)
Q Consensus 14 ~e~~~y~~~F~~~d-~~~~-g~i~g~~~~~~~~~-------s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~ 84 (545)
.....+...|+.+| .|++ |+|+.++.+.++.+ ..++.+.+.+|..-+|.|+||.++++||+..|.-+..+.
T Consensus 7 ~~i~~l~~aF~~fd~~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~~~~~~ 86 (101)
T 3nso_A 7 QAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLYC 86 (101)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 44567889999997 8887 99999999999986 347799999999999999999999999999988777776
Q ss_pred C
Q 009050 85 D 85 (545)
Q Consensus 85 ~ 85 (545)
+
T Consensus 87 ~ 87 (101)
T 3nso_A 87 H 87 (101)
T ss_dssp C
T ss_pred H
Confidence 5
No 316
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=98.15 E-value=5.4e-07 Score=72.33 Aligned_cols=67 Identities=28% Similarity=0.391 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAA 76 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~a 76 (545)
.+++++...+..+|..+|++++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+
T Consensus 16 ~l~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~ 84 (87)
T 1s6j_A 16 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 84 (87)
T ss_dssp SSCSSSTTTTTTHHHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTCSSEECHHHHTTC
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 46777778899999999999999999999999999887 78999999999999999999999999653
No 317
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=98.13 E-value=1.1e-05 Score=67.03 Aligned_cols=72 Identities=13% Similarity=0.352 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-------cCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHh
Q 009050 14 DHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL-------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQ 84 (545)
Q Consensus 14 ~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~-------s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~ 84 (545)
.....+...|+.+| .|++| +|+.++.+.++.+ ..++...+.++..-+|.|+||.++++||+.+|.-+..+.
T Consensus 8 ~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~~~~ 87 (98)
T 3n22_A 8 QALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLALITVMS 87 (98)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 45688899999997 78885 9999999999986 246899999999999999999999999999987666555
Q ss_pred C
Q 009050 85 D 85 (545)
Q Consensus 85 ~ 85 (545)
+
T Consensus 88 ~ 88 (98)
T 3n22_A 88 N 88 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 318
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=98.12 E-value=6.2e-06 Score=70.34 Aligned_cols=78 Identities=9% Similarity=0.268 Sum_probs=65.7
Q ss_pred CCCCCHHHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-----c--CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 8 IGSCSKDHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL-----S--NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~-----s--~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+.+.+..+...+...|..+| .|++| +|+.++.+.++.. - .++.+.+.++..-+|.|++|.++++||+..|.
T Consensus 13 ~~s~~~~~~~~l~~aF~~fD~~dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m~ 92 (113)
T 2lnk_A 13 MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLS 92 (113)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTTTSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 34455677889999999999 89997 9999999999975 2 36788999999999999999999999998887
Q ss_pred HHHHHhC
Q 009050 79 LISLVQD 85 (545)
Q Consensus 79 Li~~~~~ 85 (545)
-...+.+
T Consensus 93 ~~~~~~~ 99 (113)
T 2lnk_A 93 CIAMMCN 99 (113)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
No 319
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A
Probab=98.11 E-value=7.9e-06 Score=67.24 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-------cCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Q 009050 15 HQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL-------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISL 82 (545)
Q Consensus 15 e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~-------s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~ 82 (545)
....+..+|..+| .+++| +|+.++.+.++.+ ..++...+..++..+|.|++|.++.+||...|.-+..
T Consensus 11 ~~~~l~~~F~~~Dd~d~~G~~I~~~el~~~l~~~~~~~~~~~~~~~~~~~l~~~~D~~~dg~I~~~EF~~~~~~~~~ 87 (99)
T 1qls_A 11 CIESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGLAI 87 (99)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcCeeCHHHHHHHHHHHcchhccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3558999999998 99999 9999999999984 4589999999999999999999999999988865543
No 320
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=98.11 E-value=7.5e-06 Score=74.58 Aligned_cols=71 Identities=23% Similarity=0.366 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.+|+++.+.+..+|..+|.+++|.|+.++...++...| ++...+..+|..+|.+++|.++.+||..++.-.
T Consensus 4 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~EF~~~~~~~ 76 (179)
T 2f2o_A 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76 (179)
T ss_dssp --CCSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCCCcHHHHHHHHHHH
Confidence 47899999999999999999999999999999998876 678899999999999999999999998887644
No 321
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=98.10 E-value=1.1e-05 Score=74.51 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHH-----HHHHhcCCCHH-------HHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDAT-----KFFALSNLSRQ-------DLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~-----~~~~~s~L~~~-------~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+|+++.+.+.++|..+|.|++|.|+-++.. .++...|++.. .+..+|..+|.+++|.++.+||..+|.
T Consensus 14 ~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~~ 93 (195)
T 1qv0_A 14 DNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWK 93 (195)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTCCTTCCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCCCceEcHHHHHHHHH
Confidence 599999999999999999999999999998 67777887654 589999999999999999999998887
Q ss_pred HHH
Q 009050 79 LIS 81 (545)
Q Consensus 79 Li~ 81 (545)
...
T Consensus 94 ~~~ 96 (195)
T 1qv0_A 94 QLA 96 (195)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 322
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=98.08 E-value=1.7e-05 Score=64.79 Aligned_cols=71 Identities=13% Similarity=0.250 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhhCCCCCC---cccHHHHHHHHHh-----c--CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q 009050 14 DHQKIYLEWFNYADSDGDG---RITGNDATKFFAL-----S--NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (545)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g---~i~g~~~~~~~~~-----s--~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~ 83 (545)
.....+...|..+| +++| +|+.++.+.++.. - .++...+.++...+|.|++|.++.+||+.+|.-+..+
T Consensus 6 ~~~~~l~~~F~~~D-~~dG~~g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~l~~~ 84 (92)
T 3rm1_A 6 KAVVALIDVFHQYS-GREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMITTA 84 (92)
T ss_dssp HHHHHHHHHHHHHH-TSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-cCCCCcCeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHH
Confidence 45677889999999 6666 9999999999988 3 4789999999999999999999999999998777665
Q ss_pred hC
Q 009050 84 QD 85 (545)
Q Consensus 84 ~~ 85 (545)
.+
T Consensus 85 ~~ 86 (92)
T 3rm1_A 85 CH 86 (92)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 323
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=98.08 E-value=1.4e-05 Score=65.60 Aligned_cols=71 Identities=10% Similarity=0.263 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhhC-CCCC-CcccHHHHHHHHHh-cC------CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHh
Q 009050 14 DHQKIYLEWFNYAD-SDGD-GRITGNDATKFFAL-SN------LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQ 84 (545)
Q Consensus 14 ~e~~~y~~~F~~~d-~~~~-g~i~g~~~~~~~~~-s~------L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~ 84 (545)
.....+...|+..| .|++ |+|+.++.+.++.+ -| ++...+.++..-+|.|+||.++++||+.+|.-+..+.
T Consensus 7 ~~~~~l~~~F~~fd~~dg~~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~~~~ 86 (93)
T 4eto_A 7 KALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMC 86 (93)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 44578899999997 6774 89999999999986 32 5789999999999999999999999999987766654
No 324
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=98.08 E-value=9.6e-06 Score=72.81 Aligned_cols=69 Identities=29% Similarity=0.378 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.+|+++...+..+|..+|.+++|.|+.++...++...| ++.+.+..+|..+|.+++|.++.+||..++.
T Consensus 20 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 90 (166)
T 2aao_A 20 SLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATL 90 (166)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCCCCHHHHHHHHHHHCTTCCSSBCHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 37899999999999999999999999999999998865 6788999999999999999999999988764
No 325
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=98.07 E-value=1.5e-05 Score=66.80 Aligned_cols=72 Identities=10% Similarity=0.284 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhC-CCCC-CcccHHHHHHHHHh-c------CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHh
Q 009050 14 DHQKIYLEWFNYAD-SDGD-GRITGNDATKFFAL-S------NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQ 84 (545)
Q Consensus 14 ~e~~~y~~~F~~~d-~~~~-g~i~g~~~~~~~~~-s------~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~ 84 (545)
.....+...|+.+| .|++ |+|+.++.+.++.. - .++...+.+|..-+|.|+||.++++||+.+|.-+..+.
T Consensus 10 ~~~~~l~~aF~~fD~~dgd~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~m~~~~~~~ 89 (104)
T 3zwh_A 10 KALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSSIAMMS 89 (104)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 44588899999997 6775 89999999999986 3 35799999999999999999999999999987776665
Q ss_pred C
Q 009050 85 D 85 (545)
Q Consensus 85 ~ 85 (545)
+
T Consensus 90 ~ 90 (104)
T 3zwh_A 90 N 90 (104)
T ss_dssp H
T ss_pred H
Confidence 5
No 326
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=98.07 E-value=9.9e-06 Score=71.56 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
.+|+++...+...|..+|.+++|.|+-++...++...| ++...+..++..+|.+++|.++.+||..+|.-
T Consensus 3 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 74 (148)
T 1exr_A 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMAR 74 (148)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHh
Confidence 47999999999999999999999999999999998866 67889999999999999999999999887753
No 327
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=98.07 E-value=5.2e-06 Score=69.56 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc---C--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALS---N--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+++.+...+..+|..+|++++|+|+.++.+.++... | ++.+.+..++..+|.+++|.++.+||...|+
T Consensus 36 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 108 (110)
T 1pva_A 36 LKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVH 108 (110)
T ss_dssp CTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 345667889999999999999999999999999876 3 8999999999999999999999999987764
No 328
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=98.06 E-value=7e-06 Score=73.23 Aligned_cols=71 Identities=18% Similarity=0.336 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.+|+++...+..+|..+|.+++|.|+.++...++...| ++...+..+|..+|.+++|.++.+||..++...
T Consensus 13 ~ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 85 (162)
T 1top_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQ 85 (162)
T ss_dssp HSCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCcEeHHHHHHHHHHH
Confidence 58999999999999999999999999999999999876 679999999999999999999999999888655
No 329
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=98.05 E-value=2.7e-06 Score=71.16 Aligned_cols=66 Identities=24% Similarity=0.398 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC-----CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN-----LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~-----L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
++.+...+..+|+.+|.+++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+|
T Consensus 36 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~ 106 (108)
T 1rro_A 36 SKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMV 106 (108)
T ss_dssp GGSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCCSSSSSEEHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 345567789999999999999999999999998863 899999999999999999999999998766
No 330
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=98.04 E-value=6.2e-06 Score=69.03 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc-----CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALS-----NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s-----~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
......+..+|+.+|++++|+|+.++.+.++... .++.+.+..+|..+|.|++|.++.+||+..|+
T Consensus 37 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (109)
T 5pal_A 37 GKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVA 107 (109)
T ss_dssp TCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4456778999999999999999999999999865 48999999999999999999999999988775
No 331
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A
Probab=98.03 E-value=6.7e-06 Score=67.16 Aligned_cols=70 Identities=11% Similarity=0.237 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhhCC-CCCC-cccHHHHHHHH-HhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q 009050 14 DHQKIYLEWFNYADS-DGDG-RITGNDATKFF-ALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (545)
Q Consensus 14 ~e~~~y~~~F~~~d~-~~~g-~i~g~~~~~~~-~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~ 83 (545)
++...+..+|..+|. +++| +|+.++.+.++ ...| ++...+..++..+|.|++|.++.+||+..|.-+..+
T Consensus 7 ~~~~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~~~~ 81 (93)
T 1xk4_A 7 KALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVA 81 (93)
T ss_dssp HHHHHHHHHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTTCHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCcCeECHHHHHHHHHHHCcccCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 445689999999999 9999 99999999999 5666 555678999999999999999999999888655443
No 332
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=98.02 E-value=8.4e-06 Score=65.59 Aligned_cols=70 Identities=10% Similarity=0.308 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHh---cC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q 009050 14 DHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL---SN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (545)
Q Consensus 14 ~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~---s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~ 83 (545)
+....+..+|..+| .+++| +|+.++.+.++.+ .| ++...+.+++..+|.+++|.++.+||..+|.-+..+
T Consensus 7 ~~~~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~~~ 83 (90)
T 1k8u_A 7 QAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (90)
T ss_dssp HHHHHHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 33468899999999 59999 9999999999997 55 888999999999999999999999999888765544
No 333
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.02 E-value=2.7e-05 Score=77.96 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=42.7
Q ss_pred CceeecCCCCCC--hhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCe-EEEEecCCCCC
Q 009050 287 HITLVDTPGVLS--GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDK-IRVVLNKADQV 363 (545)
Q Consensus 287 ~v~liDTPG~~s--gekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~-iiiVlNK~D~~ 363 (545)
.+.|+||||... ........ + ..+ ..+..+|.+++++|+.. ..+..+.++.+... .+ ..+|+||+|..
T Consensus 182 D~ViIDTpg~~~~~~~~~l~~e-l--~~i--~~~~~~d~vllVvda~~---g~~~~~~~~~~~~~-~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 182 EIIIVDTAGRHGYGEEAALLEE-M--KNI--YEAIKPDEVTLVIDASI---GQKAYDLASKFNQA-SKIGTIIITKMDGT 252 (297)
T ss_dssp SEEEEECCCSCCTTCHHHHHHH-H--HHH--HHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHT-CTTEEEEEECGGGC
T ss_pred CEEEEeCCCCcccccHHHHHHH-H--HHH--HHHhcCCEEEEEeeCCc---hHHHHHHHHHHHhh-CCCCEEEEeCCCCC
Confidence 688999999976 32111110 0 001 12457999999999874 23344445555442 44 67899999987
Q ss_pred CH
Q 009050 364 DT 365 (545)
Q Consensus 364 ~~ 365 (545)
..
T Consensus 253 ~~ 254 (297)
T 1j8m_F 253 AK 254 (297)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 334
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=98.02 E-value=3.6e-06 Score=78.17 Aligned_cols=68 Identities=28% Similarity=0.382 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
.||+++.+.+..+|..+|.+++|.|+.++...++...| ++.+.+..+|..+|.+++|.++.+||..+|
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~E~~~~l~~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~ 72 (188)
T 1s6i_A 3 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAAT 72 (188)
T ss_dssp SSSCTTTCSHHHHHHTTSSSSSSCEEHHHHHHHHTTTTCCCCHHHHHHHHHHTCTTCSSEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCeEeHHHHHHHH
Confidence 47889999999999999999999999999999998876 788999999999999999999999998776
No 335
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=98.01 E-value=1.7e-05 Score=71.58 Aligned_cols=67 Identities=19% Similarity=0.301 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLIS 81 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~ 81 (545)
.......+|..+|++++|+|+.++.+.++...|++.+.+..++..+|.|++|.++.+||+.+|.-..
T Consensus 92 ~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~ 158 (174)
T 1q80_A 92 VEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFF 158 (174)
T ss_dssp HHTHHHHHHHHHCTTSSSSBCHHHHHHHHHHHTCCGGGHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCceEeHHHHHHHHHHHh
Confidence 3467888999999999999999999999999999999999999999999999999999999886554
No 336
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A
Probab=98.01 E-value=6.4e-06 Score=67.35 Aligned_cols=73 Identities=5% Similarity=0.231 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHh---cC-CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhC
Q 009050 13 KDHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL---SN-LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQD 85 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~---s~-L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~ 85 (545)
+++...+...|..+| ++++| +|+.++.+.++.. .| ++...+.++...+|.|++|.++++||+..|.-+..+.+
T Consensus 6 ~~~~~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~~~~~~~~~~i~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~ 84 (92)
T 2kax_A 6 EKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTMLCMAYN 84 (92)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSSEEEHHHHHHHHHHHSCCTTTCCTTHHHHHHHHTTTCSSEEEHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeeCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 355678999999999 99999 9999999999986 23 77889999999999999999999999988876554443
No 337
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=98.01 E-value=4.7e-06 Score=64.73 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=57.8
Q ss_pred HHHHHHHHhhh-CCCCC-CcccHHHHHHHHHhcC--C--CHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 16 QKIYLEWFNYA-DSDGD-GRITGNDATKFFALSN--L--SRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 16 ~~~y~~~F~~~-d~~~~-g~i~g~~~~~~~~~s~--L--~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
...+..+|..+ |.+++ |+|+.++...++...| + +.+.+..+|..+|.+++|.++.+||+..|.-
T Consensus 4 ~~~l~~~F~~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~ 73 (76)
T 1qx2_A 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKK 73 (76)
T ss_dssp HHHHHHHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCcCeECHHHHHHHHHHhCCCcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 45788999999 99999 9999999999998876 6 7789999999999999999999999887753
No 338
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.01 E-value=1e-05 Score=92.38 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=41.6
Q ss_pred CCCCCC-hhhhhhhhccChHHHHHHHhcCC---CEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCC
Q 009050 293 TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC---DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 293 TPG~~s-gekq~v~~~~~~~~ia~~~~~~a---DliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~ 360 (545)
.++.+| ||+||+. +|++++.++ +++|+ .+|+.. ...+.++++.+.+.+..+++|.|..
T Consensus 802 ~~~~LSGGErQRV~-------LAraL~~~p~~p~LLILDEPTsGLD~~~---~~~L~~lL~~L~~~G~TVIvI~HdL 868 (916)
T 3pih_A 802 PATTLSGGEAQRIK-------LASELRKRDTGRTLYILDEPTVGLHFED---VRKLVEVLHRLVDRGNTVIVIEHNL 868 (916)
T ss_dssp CSTTCCHHHHHHHH-------HHHHHTSCCCSSEEEEEESTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CccCCCHHHHHHHH-------HHHHHhhCCCCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 456778 7999998 899998776 46555 333321 3556677888877788999998843
No 339
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=98.00 E-value=6.5e-06 Score=68.92 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc-----CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALS-----NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s-----~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
......+..+|..+|.+++|+|+.++...++... .++.+.+..++..+|.+++|.++.+||+..|+
T Consensus 38 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~EF~~~~~ 108 (109)
T 3fs7_A 38 SKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVK 108 (109)
T ss_dssp TCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 3456678899999999999999999999999876 38999999999999999999999999987763
No 340
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=98.00 E-value=1.6e-05 Score=69.65 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC---CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN---LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~---L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
....+...|..+|++++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||+.+|.-.
T Consensus 38 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 106 (135)
T 3h4s_E 38 FVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRL 106 (135)
T ss_dssp HHHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHHCSSCSSSBCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHh
Confidence 456789999999999999999999999998866 699999999999999999999999999888644
No 341
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=97.99 E-value=1.4e-05 Score=66.55 Aligned_cols=64 Identities=16% Similarity=0.320 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
....+..+|..+|.+++|+|+..+.+.++...| ++...+..+|..+|.+++|.++.+||+.+|.
T Consensus 22 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~~~ 87 (105)
T 1wlz_A 22 HYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFS 87 (105)
T ss_dssp THHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHHC
T ss_pred hHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCCCcHHHHHHHHh
Confidence 456778899999999999999999999998876 7899999999999999999999999987765
No 342
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=97.99 E-value=2e-05 Score=70.38 Aligned_cols=66 Identities=14% Similarity=0.245 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+++...+..+|..+|.+++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+|.
T Consensus 46 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~~D~d~dg~I~~~eF~~~~~ 113 (150)
T 2jjz_A 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMML 113 (150)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 56788899999999999999999999999999877 7899999999999999999999999998775
No 343
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=97.99 E-value=7.6e-06 Score=68.35 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc---C--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALS---N--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+.....+..+|+.+|.+++|+|+.++...++... | ++.+.+..++..+|.+++|.++.+||+..|+
T Consensus 37 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (108)
T 2pvb_A 37 SKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIK 107 (108)
T ss_dssp GSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 4456788999999999999999999999999876 3 8999999999999999999999999987663
No 344
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.98 E-value=9.5e-06 Score=82.57 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=68.5
Q ss_pred cccccccccCc--eEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcc
Q 009050 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLT 265 (545)
Q Consensus 188 ~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~ 265 (545)
+++++++...+ .++|+|++|||||||+|+|+|...| . ...+...+..+ ..+...
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~---~-------~g~i~i~~~~e-------------~~~~~~- 215 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK---E-------ERIISIEDTEE-------------IVFKHH- 215 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT---T-------SCEEEEESSCC-------------CCCSSC-
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC---C-------CcEEEECCeec-------------cccccc-
Confidence 45566655543 8999999999999999999998732 1 11222111110 000000
Q ss_pred cccccchhhhhhhcCchhhccCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHH
Q 009050 266 TFGTAFLSKFECSQMPHSLLEHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITS 345 (545)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~lL~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~ 345 (545)
. +.+.++. | .|++|++. +++++..+||++++ |-.. ..+..++++.
T Consensus 216 --~-----------------~~i~~~~--g--gg~~~r~~-------la~aL~~~p~ilil--dE~~---~~e~~~~l~~ 260 (330)
T 2pt7_A 216 --K-----------------NYTQLFF--G--GNITSADC-------LKSCLRMRPDRIIL--GELR---SSEAYDFYNV 260 (330)
T ss_dssp --S-----------------SEEEEEC--B--TTBCHHHH-------HHHHTTSCCSEEEE--CCCC---STHHHHHHHH
T ss_pred --h-----------------hEEEEEe--C--CChhHHHH-------HHHHhhhCCCEEEE--cCCC---hHHHHHHHHH
Confidence 0 1222331 2 35677766 78888999998876 3221 1345667777
Q ss_pred HhcCCCeEEEEecCCC
Q 009050 346 LRGHDDKIRVVLNKAD 361 (545)
Q Consensus 346 L~~~~~~iiiVlNK~D 361 (545)
+...+..++++.|..+
T Consensus 261 ~~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 261 LCSGHKGTLTTLHAGS 276 (330)
T ss_dssp HHTTCCCEEEEEECSS
T ss_pred HhcCCCEEEEEEcccH
Confidence 7654446888888655
No 345
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=97.98 E-value=9.5e-06 Score=67.81 Aligned_cols=66 Identities=23% Similarity=0.302 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc-----CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALS-----NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s-----~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+.....+..+|+.+|++++|+|+.++.+.++... .++.+.+..++..+|.+++|.++.+||...|.
T Consensus 37 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (109)
T 1rwy_A 37 KKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVA 107 (109)
T ss_dssp GSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 4456788999999999999999999999999876 38999999999999999999999999987764
No 346
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=97.98 E-value=1.8e-05 Score=70.50 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+++...+..+|..+|.+++|+|+.++.+.++...| ++...+..++..+|.+++|.++.+||+.+|.
T Consensus 44 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~eF~~~~~ 111 (147)
T 1wy9_A 44 PSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMML 111 (147)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCTTEECHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 67888999999999999999999999999999877 7899999999999999999999999988774
No 347
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=97.98 E-value=1.5e-05 Score=71.99 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHH----HHHhcC--CCHHHHH-----------HHHHHhcCCCCCCCCHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATK----FFALSN--LSRQDLK-----------QVWAIADAKRQGYLGYREF 73 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~----~~~~s~--L~~~~L~-----------~Iw~l~D~~~~g~L~~~eF 73 (545)
+|+++.+.+..+|..+|.|++|.|+.++... ++...| ++.+.+. .++..+|.+++|.++.+||
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d~dg~i~~~Ef 80 (176)
T 1nya_A 1 TTAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQF 80 (176)
T ss_dssp CCSHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHH
Confidence 5889999999999999999999999999998 666666 4455655 8999999999999999999
Q ss_pred HHHHHHH
Q 009050 74 IAAMQLI 80 (545)
Q Consensus 74 ~~am~Li 80 (545)
..+|.-.
T Consensus 81 ~~~~~~~ 87 (176)
T 1nya_A 81 IRVTENL 87 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 348
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=97.97 E-value=2.3e-05 Score=68.67 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHh---cCCCCCCCCHHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIA---DAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~---D~~~~g~L~~~eF~~am~Li 80 (545)
.+|+++.+.+..+|..+|.+++|.|+-++...++...| ++...+..++..+ |.++ |.++.+||..++...
T Consensus 1 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~~~~d~~~-g~i~~~eF~~~~~~~ 75 (149)
T 2mys_C 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNA-AAITFEEFLPMLQAA 75 (149)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccccC-CcCcHHHHHHHHHHH
Confidence 37999999999999999999999999999999998866 6789999999999 9999 999999998877654
No 349
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=97.97 E-value=3.7e-05 Score=70.77 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
....+.....+|..+|.|++|+|+.++.+.++...|++.+.+..++..+|.|++|.++.+||..+|+-.
T Consensus 104 ~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~~ 172 (191)
T 2ccm_A 104 PEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLWTEY 172 (191)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSBCCHHHHHHHHHTTTCCHHHHHHHHHHHTTTTTSCCBHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Confidence 344566788999999999999999999999999999999999999999999999999999999988754
No 350
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.97 E-value=1.7e-06 Score=82.27 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=35.2
Q ss_pred hhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCC
Q 009050 299 GEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (545)
Q Consensus 299 gekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~ 364 (545)
|++||+. +|++++.+|+++|+ |-...+....+.+++..+ ..+..++ +.|..+.++
T Consensus 108 Gq~qrv~-------lAraL~~~p~lllL--DEPts~~~~~l~~~l~~l-~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 108 VEVAPLA-------YMRGRTLNDAFVIL--DEAQNTTPAQMKMFLTRL-GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp EEEEEGG-------GGTTCCBCSEEEEE--CSGGGCCHHHHHHHHTTB-CTTCEEE-EEEC-----
T ss_pred chHHHHH-------HHHHHhcCCCEEEE--eCCccccHHHHHHHHHHh-cCCCEEE-EECCHHHHh
Confidence 8999998 78899999998776 321112345566666666 4567777 999776554
No 351
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=97.97 E-value=1.3e-05 Score=70.46 Aligned_cols=68 Identities=18% Similarity=0.362 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
|+++.+.+.++|..+|.|++|+|+.++...++...| ++.+.+.++...+|.+++|.++.+||..+|..
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 70 (143)
T 2obh_A 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQ 70 (143)
T ss_dssp CHHHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeeeHHHHHHHHHH
Confidence 678999999999999999999999999999999877 57889999999999999999999999887754
No 352
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=97.97 E-value=1.6e-05 Score=82.45 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=64.5
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
-.+|++|.+.+++.|+.+|.|++|+|+-++...+|..-| ++.+.+.+|+..+|.|++|.++.+||..+|
T Consensus 294 E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~~~D~DgDG~IdFeEFl~lm 364 (440)
T 3u0k_A 294 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLIMM 364 (440)
T ss_dssp BCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCSSSEEHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 359999999999999999999999999999999999876 678999999999999999999999998765
No 353
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=97.96 E-value=7.6e-06 Score=68.48 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc---C--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALS---N--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
+.....+..+|..+|.+++|+|+.++.+.++... | ++.+.+..++..+|.+++|.++.+||+.+|
T Consensus 38 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~ 107 (109)
T 1bu3_A 38 AKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAALV 107 (109)
T ss_dssp GSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred hhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 3456778999999999999999999999999876 3 899999999999999999999999998765
No 354
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*
Probab=97.96 E-value=3.2e-05 Score=65.75 Aligned_cols=69 Identities=12% Similarity=0.187 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhhCC-CCCC-cccHHHHHHHHH-hcC-------CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADS-DGDG-RITGNDATKFFA-LSN-------LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLIS 81 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~-~~~g-~i~g~~~~~~~~-~s~-------L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~ 81 (545)
+++...+...|..+|. |++| +|+.++.+.++. .-| ++...+.++...+|.|++|.++++||+..|.-+.
T Consensus 8 ~~~~~~l~~~F~~fD~~dgdG~~Is~~El~~~l~~~lg~~~~~~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~ 86 (113)
T 1xk4_C 8 ERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMARLT 86 (113)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhhcccccCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHHHH
Confidence 3456789999999995 9999 999999999998 444 5788999999999999999999999998886554
No 355
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=97.96 E-value=1.9e-05 Score=72.44 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHH-----HHHHhcCCCHH-------HHHHHHHHhcCCCCCCCCHHHHHH
Q 009050 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDAT-----KFFALSNLSRQ-------DLKQVWAIADAKRQGYLGYREFIA 75 (545)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~-----~~~~~s~L~~~-------~L~~Iw~l~D~~~~g~L~~~eF~~ 75 (545)
.--+|++++..+..+|..+|.+++|.|+-++.. .++...|.+.. .+..+|..+|.+++|.++.+||..
T Consensus 7 ~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~ 86 (191)
T 1uhk_A 7 SDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIE 86 (191)
T ss_dssp CCTTCHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCCTTCEEEHHHHHH
T ss_pred hccCCHHHHHHHHHHHhhccCCCCCcCcHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhCcCCCCcCcHHHHHH
Confidence 344689999999999999999999999999999 78888787543 588999999999999999999988
Q ss_pred HHHHH
Q 009050 76 AMQLI 80 (545)
Q Consensus 76 am~Li 80 (545)
+|...
T Consensus 87 ~~~~~ 91 (191)
T 1uhk_A 87 GWKKL 91 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 356
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1
Probab=97.95 E-value=3.3e-06 Score=66.01 Aligned_cols=66 Identities=14% Similarity=0.272 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhhCC-CCCC-cccHHHHHHHHHh-cC--C-CHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 14 DHQKIYLEWFNYADS-DGDG-RITGNDATKFFAL-SN--L-SRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 14 ~e~~~y~~~F~~~d~-~~~g-~i~g~~~~~~~~~-s~--L-~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
++...+..+|..+|. +++| +|+.++...++.+ .| + +...+..++..+|.+++|.++.+||...|.-
T Consensus 4 ~~~~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 75 (78)
T 1cb1_A 4 KSPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKK 75 (78)
T ss_dssp CCHHHHHHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCcCEeCHHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 356788999999999 9999 9999999999986 55 6 8888999999999999999999999887753
No 357
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=97.95 E-value=8.1e-06 Score=72.48 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.||++|.+.++.+|..+|.|++|.|+-++.+.++...| ++...+..+|...|.+++|.++..||..+|.
T Consensus 3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (148)
T 2lmt_A 3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMA 73 (148)
T ss_dssp SCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCCCHHHHHHHHHHHHTTSTTEEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCchHHHHHHHHHhcccCCCCcccHHHHHHHHH
Confidence 48999999999999999999999999999999998866 6789999999999999999999999987664
No 358
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.94 E-value=2.8e-05 Score=81.97 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=21.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcc
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRT 220 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~ 220 (545)
+|+|+|++++|||||+|.|+|.
T Consensus 69 vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 8999999999999999999986
No 359
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=97.93 E-value=2.8e-05 Score=69.47 Aligned_cols=63 Identities=24% Similarity=0.338 Sum_probs=59.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
......+|..+|++++|+|+.++.+.++...|++.+.+..++..+|.|++|.++.+||..+|.
T Consensus 97 ~~~~~~~F~~~D~d~~G~i~~~E~~~~l~~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~ 159 (166)
T 3akb_A 97 RPFLHAALGVADTDGDGAVTVADTARALTAFGVPEDLARQAAAALDTDGDGKVGETEIVPAFA 159 (166)
T ss_dssp HHHHHHHHHHHCSSSSSCCBHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 345888999999999999999999999999999999999999999999999999999988875
No 360
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.93 E-value=4.4e-06 Score=88.81 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=24.5
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccC
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSY 222 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~ 222 (545)
.+++|+|+|++|||||||++.|+|...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 456999999999999999999999874
No 361
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=97.93 E-value=2.4e-05 Score=64.94 Aligned_cols=69 Identities=10% Similarity=0.271 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-----c--CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL-----S--NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLIS 81 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~-----s--~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~ 81 (545)
+++...+...|..+| .+++| +|+.++.+.++.. - .++...+.++..-+|.|++|.++++||+.+|.-..
T Consensus 6 ~~~~~~l~~~F~~fDd~dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~ 83 (99)
T 2y5i_A 6 EGAMDALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (99)
T ss_dssp HHHHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 345678999999997 88887 9999999999975 2 36889999999999999999999999998876544
No 362
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=97.93 E-value=1.4e-05 Score=74.35 Aligned_cols=66 Identities=26% Similarity=0.317 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
+|+++...+.++|..+|.+++|.|+.++...++...| ++ ..+..++..+|.+++|.++.+||..+|
T Consensus 46 l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~-~~~~~l~~~~D~d~~g~i~~~EF~~~~ 113 (191)
T 3k21_A 46 SNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLP-YNFDLLLDQIDSDGSGKIDYTEFIAAA 113 (191)
T ss_dssp CCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCC-TTHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCCCcH-HHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 6889999999999999999999999999999999877 45 788999999999999999999998776
No 363
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=97.91 E-value=1.5e-05 Score=75.99 Aligned_cols=71 Identities=23% Similarity=0.304 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.+|+++...+.++|..+|.|++|.|+.++...++...| ++...+..++..+|.|++|.++.+||..++.-+
T Consensus 44 ~l~~~e~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~EF~~~~~~~ 116 (220)
T 3sjs_A 44 TIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFM 116 (220)
T ss_dssp GCCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHCCBGGGBCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence 48999999999999999999999999999999988765 899999999999999999999999999887754
No 364
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.91 E-value=1.3e-05 Score=74.17 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.6
Q ss_pred eEEEEcCCCCChHHHHHHHHccc
Q 009050 199 MVMLLGQYSTGKTTFIKHLLRTS 221 (545)
Q Consensus 199 ~V~lvG~~naGKSTLlN~Llg~~ 221 (545)
.++|+|+||||||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999976
No 365
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Probab=97.91 E-value=9.3e-06 Score=66.87 Aligned_cols=73 Identities=11% Similarity=0.234 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-------cCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Q 009050 12 SKDHQKIYLEWFNYAD-SDGDG-RITGNDATKFFAL-------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISL 82 (545)
Q Consensus 12 s~~e~~~y~~~F~~~d-~~~~g-~i~g~~~~~~~~~-------s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~ 82 (545)
.+++...+...|+.+| .|++| +|+.++.+.++.. ..++...+.++..-+|.|++|.++++||+.+|.-...
T Consensus 7 ~e~~~~~l~~~F~~fD~~dg~gg~I~~~El~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~~~~ 86 (95)
T 2wcb_A 7 LEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALK 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSTTEEEHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTTSSSSTTSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCccCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHH
Confidence 3455778999999999 89988 9999999999975 2478899999999999999999999999988865544
Q ss_pred Hh
Q 009050 83 VQ 84 (545)
Q Consensus 83 ~~ 84 (545)
+.
T Consensus 87 ~~ 88 (95)
T 2wcb_A 87 AA 88 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 366
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=1e-05 Score=74.42 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
.||++|.+.|.+.|..+|.|++|+|+.++...++...| ++...+.+++..+|.+++|.++..||..++
T Consensus 4 ~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~d~d~~~~i~~~ef~~~~ 73 (176)
T 2lhi_A 4 NLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALM 73 (176)
T ss_dssp CCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTTCSSCSSSBCTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHHHHhCcCCCccchHHHHHHHH
Confidence 58999999999999999999999999999999998876 688999999999999999999999997765
No 367
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=97.90 E-value=4.2e-05 Score=67.19 Aligned_cols=62 Identities=23% Similarity=0.347 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
.......|+.+|++++|+|+.++.+.++...| ++.+.+.+++.-+|.|++|.++.+||+..|
T Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~~~eF~~~~ 141 (143)
T 2obh_A 78 KEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 141 (143)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 35678899999999999999999999998876 899999999999999999999999998766
No 368
>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}
Probab=97.89 E-value=2.7e-05 Score=67.17 Aligned_cols=72 Identities=14% Similarity=0.257 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHh-------cCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhC
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFAL-------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQD 85 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~-------s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~ 85 (545)
+.........|+..|.+ +|+|+.++.+.++.+ ..++.+.+.+|..-+|.|+||.++++||+..|.-+..+.+
T Consensus 11 E~~ie~l~~~F~~yd~d-dG~Is~~EL~~~l~~~~~~~l~~~~~~~~v~~~i~~~D~d~DG~IdF~EF~~lm~~l~~~~h 89 (121)
T 4drw_A 11 EHAMETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLTIACN 89 (121)
T ss_dssp HHHHHHHHHTTGGGSCT-TCSCCHHHHHHHTTTSCHHHHTTSSCTTHHHHHHHHHCTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CCEEcHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 34467889999999988 899999999999854 5688999999999999999999999999999876665543
No 369
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.89 E-value=1.5e-05 Score=69.53 Aligned_cols=66 Identities=17% Similarity=0.384 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+.....+..+|..+|++++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+|.
T Consensus 72 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 139 (145)
T 2bl0_B 72 TEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLV 139 (145)
T ss_dssp GGGHHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcEeHHHHHHHHH
Confidence 44567889999999999999999999999999988 8999999999999999999999999987765
No 370
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=97.88 E-value=4.2e-05 Score=68.72 Aligned_cols=63 Identities=27% Similarity=0.352 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
......+|..+|++++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||+.+|+
T Consensus 100 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 164 (169)
T 3qrx_A 100 REEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMK 164 (169)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence 55677889999999999999999999999876 8999999999999999999999999988764
No 371
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=97.88 E-value=4.3e-05 Score=67.97 Aligned_cols=64 Identities=17% Similarity=0.384 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
....+..+|..+|.+++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||..+|.
T Consensus 94 ~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 159 (162)
T 1top_A 94 SEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMME 159 (162)
T ss_dssp HHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 456678899999999999999999999999887 9999999999999999999999999988774
No 372
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=97.88 E-value=1.6e-05 Score=72.37 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLIS 81 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~ 81 (545)
.......+|..+|.|++|+|+.++.+.++...|++.+.+..++..+|.|++|.++.+||..+|.-..
T Consensus 103 ~~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~~~ 169 (185)
T 2sas_A 103 CQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRLL 169 (185)
T ss_dssp HHHHHHHHHHHHCTTSSSCCCHHHHHHHTTSSCCCCSSHHHHHHHHHTTTTSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHh
Confidence 4467889999999999999999999999999999999999999999999999999999998887543
No 373
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A
Probab=97.88 E-value=2.6e-05 Score=64.17 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhhC-CCC-CCcccHHHHHHHHHh-----cC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYAD-SDG-DGRITGNDATKFFAL-----SN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISL 82 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d-~~~-~g~i~g~~~~~~~~~-----s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~ 82 (545)
+++...+...|+.+| .|+ +|+|+.++.+.++.. -| ++...+.++...+|.|++|.++++||+..|.-+..
T Consensus 5 ~~~~~~l~~~F~~fD~~dgd~G~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~~ 83 (95)
T 1j55_A 5 ETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAAITS 83 (95)
T ss_dssp HHHHHHHHHHHHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHhHhhcccccCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHH
Confidence 355678999999999 688 589999999999976 22 56778999999999999999999999988865543
No 374
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=97.88 E-value=9.2e-06 Score=76.00 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+|++|...+.++|..+|++++|.|+-++.+.++.+.| ++...+..++..+|.+++|.++.+||+.++.
T Consensus 51 l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~~~ 120 (197)
T 3pm8_A 51 LCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATI 120 (197)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHHHHHHHC-------CEEHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 7899999999999999999999999999999999766 5788999999999999999999999987653
No 375
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=97.88 E-value=4.9e-05 Score=66.97 Aligned_cols=62 Identities=24% Similarity=0.433 Sum_probs=56.5
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
......|..+|++++|+|+.++.+.++...| ++.+.+..++.-+|.|++|.++.+||+.+|.
T Consensus 83 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~ 146 (148)
T 1exr_A 83 EELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMV 146 (148)
T ss_dssp HHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHc
Confidence 4566789999999999999999999999877 8999999999999999999999999987763
No 376
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.88 E-value=1.5e-05 Score=83.43 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=29.1
Q ss_pred cccccccccCc-eEEEEcCCCCChHHHHHHHHccc
Q 009050 188 LLTNSDFDAKP-MVMLLGQYSTGKTTFIKHLLRTS 221 (545)
Q Consensus 188 ~l~~~~~~~~~-~V~lvG~~naGKSTLlN~Llg~~ 221 (545)
.+++++++..+ +++|+|+||||||||+++|.+..
T Consensus 50 ~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 50 TITQLELELGGGFCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp TEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 67777777766 99999999999999999997654
No 377
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=97.87 E-value=2.1e-05 Score=69.77 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=55.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
......|+.+|.|++|+|+.++.+.++...| ++...+..++..+|.|++|.++.+||+..|
T Consensus 83 ~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~m 145 (148)
T 2lmt_A 83 EEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVWMI 145 (148)
T ss_dssp HHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSCCSSEEHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 3567889999999999999999999998765 899999999999999999999999998655
No 378
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=97.86 E-value=1.2e-05 Score=71.04 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
|+++...+..+|..+|.+++|.|+.++. ..+...|..+ .+.++|..+|.+++|.++.+||..++.
T Consensus 1 s~~~~~~l~~~F~~~D~d~~G~i~~~el-~~l~~~~~~~-~~~~~~~~~D~~~~g~i~~~ef~~~~~ 65 (155)
T 3ll8_B 1 DADEIKRLGKRFKKLDLDNSGSLSVEEF-MSLPELQQNP-LVQRVIDIFDTDGNGEVDFKEFIEGVS 65 (155)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSSBCHHHH-TTSGGGTTCT-THHHHHHHHCTTCSSSBCHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEcHHHH-HHhhccccch-HHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 6789999999999999999999999999 5666666544 889999999999999999999988774
No 379
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=97.86 E-value=5.8e-05 Score=62.76 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhhCCCC---CCcccHHHHHHHHHhcC---CC----HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Q 009050 14 DHQKIYLEWFNYADSDG---DGRITGNDATKFFALSN---LS----RQDLKQVWAIADAKRQGYLGYREFIAAMQLISL 82 (545)
Q Consensus 14 ~e~~~y~~~F~~~d~~~---~g~i~g~~~~~~~~~s~---L~----~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~ 82 (545)
.....+...|+.+|.++ +|+|+.++.+.++.+.+ ++ ...+.++..-+|.|++|.++++||+..|.-+..
T Consensus 8 ~~i~~l~~~F~~fD~~~g~~~G~Is~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~m~~~~~ 86 (100)
T 3nxa_A 8 KAVIVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGGITG 86 (100)
T ss_dssp HHHHHHHHHHHHTSCTTCSCTTCBCHHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSCCBCHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHcCcCCCCCCeEcHHHHHHHHHHHccccccccccHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 45677899999999863 79999999999998632 44 678999999999999999999999988865543
No 380
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=97.85 E-value=3e-05 Score=67.87 Aligned_cols=65 Identities=14% Similarity=0.390 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+.....+...|..+|++++|+|+.++.+.++...| ++.+.+..++.. |.+++|.++.+||+.+|.
T Consensus 81 ~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~-d~~~dg~i~~~eF~~~~~ 147 (149)
T 2mys_C 81 QGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG-QEDSNGCINYEAFVKHIM 147 (149)
T ss_pred cchHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHHhh-CCCCCCcEeHHHHHHHHh
Confidence 34467788999999999999999999999999887 899999999999 999999999999988764
No 381
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=97.83 E-value=3.5e-05 Score=70.99 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHhhh-CCCCCCcccHHHHHHHHHhc----C--CCHHHHHHHH-----------HHhcCCCCCCCCHH
Q 009050 10 SCSKDHQKIYLEWFNYA-DSDGDGRITGNDATKFFALS----N--LSRQDLKQVW-----------AIADAKRQGYLGYR 71 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~-d~~~~g~i~g~~~~~~~~~s----~--L~~~~L~~Iw-----------~l~D~~~~g~L~~~ 71 (545)
.+|+++++.+.++|..+ |.|++|+|+.++...++.+. | ++.+.+..++ ..+|.|++|.++.+
T Consensus 5 ~ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~ 84 (191)
T 2ccm_A 5 QLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKE 84 (191)
T ss_dssp CCCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHH
T ss_pred hccHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHH
Confidence 47899999999999999 99999999999999998876 5 5566777777 89999999999999
Q ss_pred HHHHHHHHH
Q 009050 72 EFIAAMQLI 80 (545)
Q Consensus 72 eF~~am~Li 80 (545)
||..+|+-.
T Consensus 85 Ef~~~~~~~ 93 (191)
T 2ccm_A 85 EWLKMWAEC 93 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888664
No 382
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=97.82 E-value=3.9e-05 Score=71.89 Aligned_cols=64 Identities=16% Similarity=0.347 Sum_probs=59.3
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.....+|..+|.|++|+|+.++.+.++...|++.+.+..++..+|.|++|.++.+||..+|.-.
T Consensus 128 ~~~~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 191 (208)
T 2hpk_A 128 LLSNSYYDVLDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFEKADTDKSGKLERTELVHLFRKF 191 (208)
T ss_dssp HHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTSCTTHHHHHHHHHCTTCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3378899999999999999999999999999999999999999999999999999999887643
No 383
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.81 E-value=3.1e-05 Score=79.88 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=41.4
Q ss_pred CCCCCC-hhhhhhhhccChHHHHHHHh------cCCCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 293 TPGVLS-GEKQRTQRAYDFTGVTSWFA------AKCDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 293 TPG~~s-gekq~v~~~~~~~~ia~~~~------~~aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
.|+.+| ||+|++. ++++++ .+|+++|+ .+|+.. ...+.+++..+...+..+++|.|.
T Consensus 276 ~~~~LSgGe~qr~~-------la~al~~~~~~~~~p~~lllDEpt~~LD~~~---~~~~~~~l~~l~~~g~tvi~itH~ 344 (365)
T 3qf7_A 276 PARGLSGGERALIS-------ISLAMSLAEVASGRLDAFFIDEGFSSLDTEN---KEKIASVLKELERLNKVIVFITHD 344 (365)
T ss_dssp EGGGSCHHHHHHHH-------HHHHHHHHHHTTTTCCEEEEESCCTTSCHHH---HHHHHHHHHGGGGSSSEEEEEESC
T ss_pred CchhCCHHHHHHHH-------HHHHHHhhhcccCCCCEEEEeCCCccCCHHH---HHHHHHHHHHHHhCCCEEEEEecc
Confidence 456677 7999988 777776 69998887 344432 355667777777778889998884
No 384
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=97.80 E-value=2.3e-05 Score=68.34 Aligned_cols=63 Identities=14% Similarity=0.367 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
...+...|..+|++++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||+.+|.
T Consensus 75 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 139 (143)
T 3j04_B 75 EDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILK 139 (143)
T ss_dssp HHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHHTTCCSSSCCCSTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHh
Confidence 45678899999999999999999999999877 8999999999999999999999999988764
No 385
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=97.79 E-value=4.7e-05 Score=69.24 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHhhh-CCCCCCcccHHHHHHHHHhc------CCCHHHHHHH-----------HHHhcCCCCCCCCHHH
Q 009050 11 CSKDHQKIYLEWFNYA-DSDGDGRITGNDATKFFALS------NLSRQDLKQV-----------WAIADAKRQGYLGYRE 72 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~-d~~~~g~i~g~~~~~~~~~s------~L~~~~L~~I-----------w~l~D~~~~g~L~~~e 72 (545)
||++++..+..+|..+ |.|++|.|+-++...++... +++...+.++ +..+|.|++|.++.+|
T Consensus 2 ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~dG~I~~~E 81 (185)
T 2sas_A 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEE 81 (185)
T ss_dssp CCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHH
T ss_pred cCHHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEcHHH
Confidence 7899999999999999 99999999999998887663 4677777654 8999999999999999
Q ss_pred HHHHHHHHH
Q 009050 73 FIAAMQLIS 81 (545)
Q Consensus 73 F~~am~Li~ 81 (545)
|..+|....
T Consensus 82 f~~~~~~~~ 90 (185)
T 2sas_A 82 YLAMWEKTI 90 (185)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998886653
No 386
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=97.79 E-value=3.9e-05 Score=69.30 Aligned_cols=63 Identities=16% Similarity=0.362 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
......+|..+|++++|+|+.++.+.++...|++.+.+..++..+|.|++|.++.+||..+|.
T Consensus 101 ~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~ 163 (176)
T 1nya_A 101 GPVVKGIVGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVR 163 (176)
T ss_dssp HHHHHHHHHHTCSSCCSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 456888999999999999999999999999999999999999999999999999999987763
No 387
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=97.79 E-value=4.9e-05 Score=66.68 Aligned_cols=62 Identities=21% Similarity=0.395 Sum_probs=57.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHh-cC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFAL-SN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~-s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
......+|..+|.+++|+|+.++.+.++.. .| ++.+.+..++..+|.+++|.++.+||+.+|
T Consensus 87 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 151 (153)
T 3ox6_A 87 VKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 151 (153)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 466788999999999999999999999987 55 999999999999999999999999998765
No 388
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=97.79 E-value=4.5e-05 Score=68.49 Aligned_cols=63 Identities=17% Similarity=0.428 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.......|..+|.|++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||+.+|.
T Consensus 94 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~ 158 (166)
T 2mys_B 94 EDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVIT 158 (166)
T ss_pred HHHHHHHHHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHH
Confidence 35678899999999999999999999999876 8999999999999999999999999988774
No 389
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=97.79 E-value=1.5e-05 Score=74.39 Aligned_cols=68 Identities=9% Similarity=0.079 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
.+|+++...+..+|..+|.|++|+|+.++...+ ..-|+... +..+|..+|.+++|.++.+||..+|..
T Consensus 22 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~-~~lg~~~~-~~~l~~~~D~d~dg~i~~~EF~~~~~~ 89 (202)
T 2bec_A 22 GFSQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GALAVNPL-GDRIIESFFPDGSQRVDFPGFVRVLAH 89 (202)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCSSCCCHHHHHTC-HHHHHSTT-HHHHHHTTSCSSCCCCCHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-HhcCCCcc-HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999999999999999999888 66666554 999999999999999999999887653
No 390
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=97.79 E-value=7e-06 Score=72.49 Aligned_cols=71 Identities=17% Similarity=0.311 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCC--CCCCCCHHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAK--RQGYLGYREFIAAMQLI 80 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~--~~g~L~~~eF~~am~Li 80 (545)
.+|+++.+.+..+|..+|.+++|+|+.++...++...| ++...+..++..+|.+ ++|.++.+||..++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~g~i~~~eF~~~~~~~ 77 (151)
T 1w7j_B 3 EFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAV 77 (151)
T ss_dssp --------CHHHHHHHHCCSSSSEEESTTHHHHHHHTTCCCCHHHHHHHTTCCCHHHHTTCEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCcCCCCcCcHHHHHHHHHHH
Confidence 47999999999999999999999999999999998876 6788999999999999 99999999998887654
No 391
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=97.78 E-value=3e-05 Score=70.25 Aligned_cols=67 Identities=15% Similarity=0.310 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC---CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 14 DHQKIYLEWFNYADSDGDGRITGNDATKFFALSN---LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~---L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.+.+.+.++|..+|.+++|+|+.++...++...| ++...+..+|..+|.+++|.++.+||..++.-+
T Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~ef~~~~~~~ 73 (172)
T 2znd_A 4 PDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYI 73 (172)
T ss_dssp --CHHHHHHHHHHCTTCSSCEEHHHHHHHCCCSSSSCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhCCCCCCcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence 3567799999999999999999999999998876 789999999999999999999999999887654
No 392
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=97.78 E-value=4.5e-05 Score=67.99 Aligned_cols=63 Identities=13% Similarity=0.368 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHH--HhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWA--IADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~--l~D~~~~g~L~~~eF~~am~ 78 (545)
...+...|..+|++++|+|+.++.+.++...| ++.+.+..++. .+|.|++|.++.+||+.+|.
T Consensus 84 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 150 (159)
T 2ovk_C 84 ADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVM 150 (159)
T ss_dssp HHHHHHHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCTTCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCCCcEeHHHHHHHHh
Confidence 45678899999999999999999999999887 99999999999 88999999999999987664
No 393
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=97.77 E-value=2e-05 Score=70.22 Aligned_cols=64 Identities=19% Similarity=0.404 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
....+..+|..+|.+++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||+.+|.
T Consensus 93 ~~~~~~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 158 (161)
T 1dtl_A 93 SEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158 (161)
T ss_dssp HHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC--CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 456688999999999999999999999998877 8999999999999999999999999988875
No 394
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=97.77 E-value=9.2e-05 Score=66.34 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=64.6
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCC-----------------------------------CHHH
Q 009050 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNL-----------------------------------SRQD 52 (545)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L-----------------------------------~~~~ 52 (545)
.-.||++|.+.+++.|..+|+|++|+|+-.+...++..-|. +.+.
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~~~~~ 86 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPEDA 86 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHHHTSSSCCCSHHHHHTTTTTTTTCCCHHH
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHHHhccCCccHHHHHHHHHhhhcccccHHH
Confidence 35699999999999999999999999999999888876542 3567
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 009050 53 LKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQVTHD 92 (545)
Q Consensus 53 L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~g~~~~~~ 92 (545)
|.+.+.+.|.+++|+++.+||..+|. .-|.+++.+
T Consensus 87 l~~aF~~fD~d~~G~I~~~el~~~l~-----~~g~~ls~~ 121 (153)
T 3i5g_B 87 LRNAFSMFDEDGQGFIPEDYLKDLLE-----NMGDNFSKE 121 (153)
T ss_dssp HHHHHHTTCSSCSSCCCHHHHHHHHH-----SSSSCCCHH
T ss_pred HHHHHhccccCCCCeEeHHHHHHHHH-----HcCCcCCHH
Confidence 88888889999999999999877653 235555543
No 395
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=97.76 E-value=2.1e-05 Score=69.83 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHhhhCC--CCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADS--DGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~--~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.+|+++.+.+.++|..+|. +++|.|+.++.+.++...| ++...+..+ ..+|.+++|.++.+||..+|...
T Consensus 2 ~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l-~~~D~~~~g~i~~~eF~~~~~~~ 75 (156)
T 1wdc_C 2 KLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAV-GGTHKMGEKSLPFEEFLPAYEGL 75 (156)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCCCHHHHHHT-TCCSSTTSCEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCCCCHHHHHHH-HhhCCCCCCeeeHHHHHHHHHHH
Confidence 4899999999999999999 9999999999999998866 678889999 99999999999999998877654
No 396
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Probab=97.76 E-value=3.1e-05 Score=65.19 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhhC-CCCC-CcccHHHHHHHHHh-cC--CC-HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 14 DHQKIYLEWFNYAD-SDGD-GRITGNDATKFFAL-SN--LS-RQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 14 ~e~~~y~~~F~~~d-~~~~-g~i~g~~~~~~~~~-s~--L~-~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
++...+...|..+| .|++ |+|+.++.+.++.. .| ++ ++.+.+|..-+|.|++|.++++||+.+|.-.
T Consensus 19 ~~~~~l~~aF~~fD~~dg~~G~Is~~EL~~~l~~~lg~~~~~~~ev~~li~~~D~d~dG~Idf~EF~~~~~~~ 91 (106)
T 2h2k_A 19 ESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGEL 91 (106)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHCTTTTTTCCCHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcCcCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHH
Confidence 44668999999999 7886 79999999999976 44 43 3679999999999999999999999887644
No 397
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=97.74 E-value=1.9e-05 Score=72.58 Aligned_cols=67 Identities=19% Similarity=0.413 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc-------------CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALS-------------NLSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s-------------~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
+++++...+.++|..+|.+++|.|+.++...++... +++...+..+|..+|.+++|.++.+||..++
T Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~g~i~~~ef~~~~ 113 (191)
T 3khe_A 34 TTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVC 113 (191)
T ss_dssp SCTTTTHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTCTTCSSSEEHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHhCCCCCCcCCHHHHHHHH
Confidence 378899999999999999999999999999988754 4778899999999999999999999998876
No 398
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=97.74 E-value=3.7e-05 Score=67.49 Aligned_cols=63 Identities=14% Similarity=0.347 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.......|..+|++++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||+.+|.
T Consensus 82 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~ 146 (148)
T 1m45_A 82 TEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVL 146 (148)
T ss_dssp THHHHHHHHTTCSSSSSEEEHHHHHHHHHHSTTCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 35678899999999999999999999999877 8999999999999999999999999988764
No 399
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=97.73 E-value=6.3e-05 Score=66.78 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
......+|..+|.+++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+|.
T Consensus 95 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 159 (161)
T 3fwb_A 95 LDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAICT 159 (161)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCSSSSSSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 45677889999999999999999999998776 8999999999999999999999999987764
No 400
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=97.73 E-value=6.1e-05 Score=65.67 Aligned_cols=62 Identities=19% Similarity=0.373 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
.......+|..+|++++|+|+.++.+.++...| ++.+.+..++..+| +++|.++.+||+.+|
T Consensus 82 ~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~l 145 (147)
T 4ds7_A 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALL 145 (147)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHS-SSCSSEEHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHH
Confidence 345677889999999999999999999999877 89999999999999 999999999998765
No 401
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=97.73 E-value=7.2e-05 Score=67.85 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhhCCCCCCcccHHHHHHHHHh----------cCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 14 DHQKIYLEWFNYADSDGDGRITGNDATKFFAL----------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~----------s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
+|.+.+.++|..+| +++|.|+.++...++.. .+++...+..++..+|.+++|.++.+||..+|.-+
T Consensus 1 e~~~~l~~~F~~~D-d~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~ 76 (173)
T 1alv_A 1 EEVRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI 76 (173)
T ss_dssp CHHHHHHHHHHHHH-GGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHh-CCCCCcCHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHcCCCCCccCHHHHHHHHHHH
Confidence 46788999999999 99999999999999977 46889999999999999999999999998887643
No 402
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.71 E-value=6.9e-05 Score=75.82 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=24.9
Q ss_pred ccccccCc--eEEEEcCCCCChHHHHHHHHccc
Q 009050 191 NSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (545)
Q Consensus 191 ~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~ 221 (545)
+++|...+ +|+++|++|+||||++..|++..
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44454333 89999999999999999998865
No 403
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=97.71 E-value=6.6e-05 Score=68.19 Aligned_cols=62 Identities=24% Similarity=0.424 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
......+|..+|++++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||..+|
T Consensus 83 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~ 146 (179)
T 2f2o_A 83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146 (179)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHC--CCCHHHHHHHHHHHCTTCSSSEEHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 45577899999999999999999999999887 899999999999999999999999997765
No 404
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=97.71 E-value=7.2e-05 Score=67.50 Aligned_cols=61 Identities=15% Similarity=0.443 Sum_probs=55.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcC--CCCCCCCHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADA--KRQGYLGYREFIAAM 77 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~--~~~g~L~~~eF~~am 77 (545)
..+...|+.+|++++|+|+.++.+.++...| ++.+.+..++..+|. |++|.++.+||+..|
T Consensus 85 ~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m 149 (159)
T 3i5g_C 85 DEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKV 149 (159)
T ss_dssp HHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHH
Confidence 4577889999999999999999999999876 899999999999996 778999999998766
No 405
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=97.69 E-value=5.4e-05 Score=70.38 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
++.+.+.+.++|..+|.+++|.|+.++...++...| ++...+..++..+|.+++|.++.+||..+|
T Consensus 32 ~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~ 99 (204)
T 3e3r_A 32 GASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRAL 99 (204)
T ss_dssp --------CHHHHHHCTTCCSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHT
T ss_pred CchhHHHHHHHHHHHccCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 346677889999999999999999999999999876 789999999999999999999999998775
No 406
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=97.69 E-value=2.5e-05 Score=70.02 Aligned_cols=62 Identities=26% Similarity=0.428 Sum_probs=48.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.....+|..+|++++|+|+.++.+.++...|++.+.+..++..+|.+++|.++.+||..+|.
T Consensus 99 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 160 (166)
T 2aao_A 99 DHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIEELMRDVDQDNDGRIDYNEFVAMMQ 160 (166)
T ss_dssp HHHHHHHHHHCTTCSSSBCHHHHHHHTCC--------CCHHHHHCTTCSSSBCHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 45778899999999999999999999988899999999999999999999999999987764
No 407
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=97.69 E-value=5.5e-05 Score=69.42 Aligned_cols=64 Identities=30% Similarity=0.530 Sum_probs=58.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.....+|..+|.+++|+|+.++.+.++...+++.+.+..+|..+|.|++|.++.+||+.+|.-+
T Consensus 123 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 186 (191)
T 3khe_A 123 ERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKI 186 (191)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHTTSSCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCcCCHHHHHHHHccCCCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999999999778999999999999999999999999998888643
No 408
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=97.69 E-value=5e-05 Score=67.33 Aligned_cols=64 Identities=22% Similarity=0.444 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHH--hcCCCCCCCCHHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAI--ADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l--~D~~~~g~L~~~eF~~am~ 78 (545)
....+..+|..+|.+++|+|+.++.+.++...| ++.+.+..++.. +|.+++|.++.+||+.+|.
T Consensus 82 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 149 (156)
T 1wdc_C 82 TFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVM 149 (156)
T ss_dssp CHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCCcEeHHHHHHHHh
Confidence 346788899999999999999999999999877 899999999999 9999999999999987764
No 409
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=97.68 E-value=4.9e-05 Score=70.83 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc-C--CCHHHHHHHHHH----hcCCCCCCCCHHHHHHHHH
Q 009050 12 SKDHQKIYLEWFNYADSDGDGRITGNDATKFFALS-N--LSRQDLKQVWAI----ADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 12 s~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s-~--L~~~~L~~Iw~l----~D~~~~g~L~~~eF~~am~ 78 (545)
.......+..+|..+|.|++|+|+.++.+.++... | ++.+.+..++.. +|.|++|.++.+||+.+|.
T Consensus 109 ~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 182 (202)
T 2bec_A 109 LNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLE 182 (202)
T ss_dssp TTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTT
T ss_pred cccHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 44567788999999999999999999999999987 7 899999999988 9999999999999987664
No 410
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=97.68 E-value=4.5e-05 Score=67.71 Aligned_cols=62 Identities=29% Similarity=0.441 Sum_probs=57.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
......+|..+|++++|+|+.++.+.++...| ++.+.+..++..+|.+++|.++.+||+.+|
T Consensus 90 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~ 153 (158)
T 2jnf_A 90 QQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVM 153 (158)
T ss_dssp SSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHCTTCCHHHHHHHHHHHCSSCCSEECSHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCcCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 34578899999999999999999999999877 899999999999999999999999998765
No 411
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.68 E-value=4.4e-05 Score=66.50 Aligned_cols=61 Identities=21% Similarity=0.385 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
......+|..+|++++|+|+.++.+.++...| ++.+.+..++..+| +++|.++.+||+.+|
T Consensus 78 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~~ 140 (142)
T 2bl0_C 78 EDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE-TEKGQIRYDNFINTM 140 (142)
T ss_dssp HHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHHC-CSSSEECSHHHHTTT
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CCCCcEeHHHHHHHH
Confidence 34566778888888888888888888887765 77788888888888 888888888886543
No 412
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.68 E-value=1.8e-05 Score=90.10 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=46.0
Q ss_pred hhccCceeec-----CCCCCC-hhhhhhhhccChHHHHHHHhcCC---CEEEE-----EeCCCCCCccHHHHHHHHHHhc
Q 009050 283 SLLEHITLVD-----TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC---DLILL-----LFDPHKLDISDEFKRVITSLRG 348 (545)
Q Consensus 283 ~lL~~v~liD-----TPG~~s-gekq~v~~~~~~~~ia~~~~~~a---DliLl-----vlD~~~~~~~~~~~~~l~~L~~ 348 (545)
++|..+.|-+ .|+.+| |++||+. +|++++.++ +++|+ .+|+.. ...+.+++..+.+
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~-------LAraL~~~p~~p~lLILDEPTsGLD~~~---~~~l~~lL~~L~~ 896 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQRVK-------LAAELHRRSNGRTLYILDEPTTGLHVDD---IARLLDVLHRLVD 896 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHHHH-------HHHHHSSCCCSCEEEEEECTTTTCCHHH---HHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHHHH-------HHHHHhcCCCCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHh
Confidence 3455555532 456677 7999998 899998765 77766 344432 4566778888877
Q ss_pred CCCeEEEEecC
Q 009050 349 HDDKIRVVLNK 359 (545)
Q Consensus 349 ~~~~iiiVlNK 359 (545)
.+..+++|.|.
T Consensus 897 ~G~TVIvisHd 907 (972)
T 2r6f_A 897 NGDTVLVIEHN 907 (972)
T ss_dssp TTCEEEEECCC
T ss_pred CCCEEEEEcCC
Confidence 78888888873
No 413
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=97.67 E-value=0.00012 Score=65.60 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCC---CHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNL---SRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L---~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
-.+|+++...+..+|..+|.+++|.|+.++...++...|. +...+..++.-. +|.++.+||..+|.-
T Consensus 17 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~----dg~i~~~eF~~~~~~ 86 (166)
T 2mys_B 17 SMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA----SGPINFTVFLTMFGE 86 (166)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHC----CCCcCHHHHHHHHHH
Confidence 4689999999999999999999999999999999988765 566666666532 577777777666653
No 414
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=97.67 E-value=0.00013 Score=65.88 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=58.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
..+..+|..+|.+++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||..+|.-.
T Consensus 74 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~~ 139 (172)
T 2znd_A 74 TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVL 139 (172)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4567899999999999999999999999877 899999999999999999999999999888654
No 415
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.67 E-value=1.6e-05 Score=75.89 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=22.8
Q ss_pred ccCcccccccccCc--eEEEEcCCCCChHHHHHHHHccc
Q 009050 185 VSPLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (545)
Q Consensus 185 ~~~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~ 221 (545)
+...+++++|...+ +++|+||+|||||||++.|+|..
T Consensus 9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34578899988876 99999999999999999999976
No 416
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=7.4e-05 Score=68.61 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
....+...|+.+|+|++|+|+.++.+.+|...| ++.+.+.+++.-+| |+||.++.+||+..|
T Consensus 82 ~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~d-d~dG~I~~~EF~~~m 145 (176)
T 2lhi_A 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVS-DGSGEINIQQFAALL 145 (176)
T ss_dssp HHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHH-TTSSCBCTTHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhhc-CCCCeEeHHHHHHHH
Confidence 345678899999999999999999999999876 88999999999999 999999999998766
No 417
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=97.66 E-value=0.00015 Score=67.17 Aligned_cols=64 Identities=27% Similarity=0.447 Sum_probs=58.7
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
..+...|..+|.+++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||..+|.-.
T Consensus 93 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~ 158 (191)
T 1y1x_A 93 LSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFV 158 (191)
T ss_dssp HHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHH
Confidence 4567899999999999999999999999877 899999999999999999999999999888654
No 418
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.66 E-value=2e-05 Score=89.96 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=40.9
Q ss_pred CCCCCC-hhhhhhhhccChHHHHHHHhcCC---CEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 293 TPGVLS-GEKQRTQRAYDFTGVTSWFAAKC---DLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 293 TPG~~s-gekq~v~~~~~~~~ia~~~~~~a---DliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
.++.+| |++||+. +|++++.++ +++|+ .+|+.. ...+.+++..+...+..+++|.+.
T Consensus 860 ~~~~LSGGekQRv~-------LAraL~~~p~~p~lLILDEPTsGLD~~~---~~~l~~lL~~L~~~G~TVIvisHd 925 (993)
T 2ygr_A 860 PAPTLSGGEAQRVK-------LASELQKRSTGRTVYILDEPTTGLHFDD---IRKLLNVINGLVDKGNTVIVIEHN 925 (993)
T ss_dssp CGGGSCHHHHHHHH-------HHHHHSSCCCSSEEEEEESTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ccccCCHHHHHHHH-------HHHHHHhCCCCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEcCC
Confidence 456677 7999998 899998765 66666 344322 455667788887778888888873
No 419
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=97.66 E-value=5e-05 Score=66.03 Aligned_cols=65 Identities=15% Similarity=0.333 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+.....+...|..+|++++|+|+.++.+.++...| ++.+.+..++..+|. ++|.++.+||+.+|.
T Consensus 72 ~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~-~dg~i~~~eF~~~~~ 138 (140)
T 1ggw_A 72 PGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPV-KDGMVNYHDFVQMIL 138 (140)
T ss_dssp SCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHHHTTC-SSCCSTTTHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CCCcEeHHHHHHHHh
Confidence 34457788999999999999999999999998865 899999999999999 999999999987763
No 420
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=97.65 E-value=2.5e-05 Score=73.27 Aligned_cols=72 Identities=11% Similarity=0.151 Sum_probs=58.3
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc----CCCHHHHHHHH-------HHhcCCCCCCCCHHHHHHH
Q 009050 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALS----NLSRQDLKQVW-------AIADAKRQGYLGYREFIAA 76 (545)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s----~L~~~~L~~Iw-------~l~D~~~~g~L~~~eF~~a 76 (545)
.-.+|+++...+.++|..+|.|++|.|+.++...++... +++.+.+..++ ..+|.+++|.++.+||..+
T Consensus 27 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~~~~~~~~~~l~~~~~~lf~~~D~d~dg~i~~~EF~~~ 106 (208)
T 2hpk_A 27 VEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEA 106 (208)
T ss_dssp ---------CHHHHHHHHHCTTCSSEECHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCBTTTBEEGGGHHHH
T ss_pred HHHcCHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHH
Confidence 356899999999999999999999999999999988764 57889999999 9999999999999999998
Q ss_pred HHH
Q 009050 77 MQL 79 (545)
Q Consensus 77 m~L 79 (545)
|..
T Consensus 107 ~~~ 109 (208)
T 2hpk_A 107 NRV 109 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 421
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=97.64 E-value=2.6e-05 Score=68.73 Aligned_cols=62 Identities=21% Similarity=0.490 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
....+...|..+|++++|+|+.++.+.++...| ++.+.+..++..+| +++|.++.+||+.+|
T Consensus 85 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~~ 148 (151)
T 1w7j_B 85 TYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHE-DSNGCINYEAFLKHI 148 (151)
T ss_dssp ---CCHHHHHTTCTTSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCC-CTTSEEEHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCCCeEeHHHHHHHH
Confidence 345567799999999999999999999999988 89999999999999 999999999998765
No 422
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=97.64 E-value=3.8e-05 Score=68.08 Aligned_cols=62 Identities=24% Similarity=0.485 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhc----------CCCHHHHHHHH----HHhcCCCCCCCCHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALS----------NLSRQDLKQVW----AIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s----------~L~~~~L~~Iw----~l~D~~~~g~L~~~eF~~am 77 (545)
...+..+|+.+|.|++|+|+.++.+.++... .++.+.+..+| ..+|.|++|.++.+||+.+|
T Consensus 67 ~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~g~~~s~~e~~~~~~~~f~~~D~d~dG~Is~~EF~~~~ 142 (143)
T 3a4u_B 67 QELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSL 142 (143)
T ss_dssp HHHHHHHHHHTCTTCSSCEEHHHHHHTCC-------------CCHHHHHHHHHHHHHHHCTTCSSEECHHHHHC--
T ss_pred HHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHcCCCCCCcEeHHHHHHHH
Confidence 3467788999999999999999999988764 48999998888 99999999999999998655
No 423
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=97.63 E-value=4.4e-05 Score=63.47 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=50.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHh-----cCCCH-------------HHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 19 YLEWFNYADSDGDGRITGNDATKFFAL-----SNLSR-------------QDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 19 y~~~F~~~d~~~~g~i~g~~~~~~~~~-----s~L~~-------------~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
+...|..+|.|++|+|+.++...++.. .|.+. ..+..++..+|.|++|.++++||..+|
T Consensus 22 ~~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~ 98 (103)
T 1snl_A 22 PKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLAST 98 (103)
T ss_dssp HHHHHHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHH
Confidence 678899999999999999999999985 35322 248889999999999999999998766
No 424
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=97.63 E-value=8.1e-05 Score=65.80 Aligned_cols=62 Identities=19% Similarity=0.377 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
...+...|..+|++++|+|+.++.+.++...| ++.+.+..++..+|. ++|.++.+||+.+|.
T Consensus 84 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~-~dg~I~~~eF~~~~~ 147 (153)
T 2ovk_B 84 EDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPL-KNKQFNYNKMVDIKG 147 (153)
T ss_dssp TTHHHHHHHTTCSSCSSCCCHHHHHHHHHHSSSCCCHHHHHHHHHHCCE-ETTEECHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CCCEEeHHHHHHHHh
Confidence 35678899999999999999999999999887 899999999999999 999999999988764
No 425
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=97.62 E-value=9.2e-05 Score=65.68 Aligned_cols=62 Identities=11% Similarity=0.250 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.......|..+|++++|+|+.++.+.++...| ++.+.+..++..+|.+ +|.++.+||+.+|.
T Consensus 86 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~-dg~i~~~eF~~~~~ 149 (156)
T 1wdc_B 86 EETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAMIK 149 (156)
T ss_dssp HHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHCCEE-TTEECHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-CCEEeHHHHHHHHh
Confidence 35677899999999999999999999999877 8999999999999999 99999999987764
No 426
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.62 E-value=4.8e-05 Score=76.27 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=57.4
Q ss_pred HHHhcCCCEEEEEeCCCCCCc-cHHHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHHHHHHhcccccCCccEEEEe
Q 009050 315 SWFAAKCDLILLLFDPHKLDI-SDEFKRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYI 393 (545)
Q Consensus 315 ~~~~~~aDliLlvlD~~~~~~-~~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~l~~v~~~l~~~l~k~~~~~~v~~v~i 393 (545)
+.++.++|++|+|+|+++... ......++..+...+.|+++|+||+|+.+..++.+.. .+....... ...+.+
T Consensus 79 ~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~-~~~~~~~~~-----~~~~~~ 152 (301)
T 1u0l_A 79 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVR-ELEEIYSGL-----YPIVKT 152 (301)
T ss_dssp TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHH-HHHHHHTTT-----SCEEEC
T ss_pred ccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHH-HHHHHHhhh-----CcEEEE
Confidence 445899999999999987542 3455677777766789999999999998765432211 111111221 233799
Q ss_pred eccCCCccCc
Q 009050 394 GSFNDKPVNE 403 (545)
Q Consensus 394 Sa~~~~~~~~ 403 (545)
||++|.|+++
T Consensus 153 SAktg~gv~~ 162 (301)
T 1u0l_A 153 SAKTGMGIEE 162 (301)
T ss_dssp CTTTCTTHHH
T ss_pred ECCCCcCHHH
Confidence 9999999876
No 427
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=97.61 E-value=3.1e-05 Score=72.10 Aligned_cols=69 Identities=16% Similarity=0.299 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC-------CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN-------LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~-------L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.++.+++.+.+ |..+|.+++|.|+-++...++...| ++...+.++|..+|.+++|.++.+||..++..+
T Consensus 27 ~~~~~~~~l~~-F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~eF~~~~~~~ 102 (198)
T 1juo_A 27 FPGQTQDPLYG-YFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL 102 (198)
T ss_dssp CTTCCCCTTHH-HHHHHHTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH
T ss_pred CCccccHHHHH-HHHHhCCCCCcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCCCCCCeECHHHHHHHHHHH
Confidence 67778888999 9999999999999999999999865 589999999999999999999999999888754
No 428
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=97.61 E-value=6.5e-05 Score=67.34 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
...+...|+.+|++++|+|+.++.+.+|..-| |+.+.+..++.-+|.+ +|.++.+||+-.|+
T Consensus 84 ~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~~~D~~-dG~I~y~EF~~~m~ 147 (153)
T 3i5g_B 84 EDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDIKG 147 (153)
T ss_dssp HHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHTTCCEE-TTEECHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHHHhCCC-cCEEcHHHHHHHhc
Confidence 35678899999999999999999999999876 8999999999999987 99999999987663
No 429
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=97.61 E-value=0.00012 Score=64.44 Aligned_cols=67 Identities=24% Similarity=0.355 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhhCCCCCCcccHHHHHHHHHh-cC--CCHHHHHHHHHH----hcCCCCCCCCHHHHHHHHHHH
Q 009050 14 DHQKIYLEWFNYADSDGDGRITGNDATKFFAL-SN--LSRQDLKQVWAI----ADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~-s~--L~~~~L~~Iw~l----~D~~~~g~L~~~eF~~am~Li 80 (545)
.....+..+|..+|.+++|+|+.++.+.++.. .| ++...+..++.. +|.|++|.++.+||..+|.-+
T Consensus 72 ~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 145 (155)
T 3ll8_B 72 DKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGL 145 (155)
T ss_dssp CHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 34567888999999999999999999999876 34 888888888887 999999999999998777543
No 430
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=97.60 E-value=0.00012 Score=67.92 Aligned_cols=64 Identities=25% Similarity=0.417 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC----CCH---HHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN----LSR---QDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~----L~~---~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
...+...|..+|.|++|+|+.++.+.++...+ ++. +.+.+++..+|.|++|.++.+||+.+|++
T Consensus 121 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~l 191 (191)
T 3k21_A 121 KKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMMKL 191 (191)
T ss_dssp HHHHHHHHHHHSTTCSSCBCHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHHHHHcC
Confidence 45677899999999999999999999998733 555 46889999999999999999999988753
No 431
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Probab=97.59 E-value=7.5e-05 Score=61.97 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc---------CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFALS---------NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---------~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~ 83 (545)
+++...+...|+.+|.+ +|+|+.++.+.++... .++...+.++..-+|.|++|.++.+||+..|.-...+
T Consensus 6 ~~~~~~l~~~F~~fD~~-~g~Is~~El~~~l~~~~~~~lg~~~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~ 84 (100)
T 1psr_A 6 ERSIIGMIDMFHKYTRR-DDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDIATD 84 (100)
T ss_dssp HHHHHHHHHHHHHTCCT-TSCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCeECHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 45677899999999976 7999999999999752 3567788899999999999999999999988766554
Q ss_pred hC
Q 009050 84 QD 85 (545)
Q Consensus 84 ~~ 85 (545)
.+
T Consensus 85 ~~ 86 (100)
T 1psr_A 85 YH 86 (100)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 432
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.59 E-value=1.9e-05 Score=79.35 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=22.3
Q ss_pred cCceEEEEcCCCCChHHHHHHHHcccC
Q 009050 196 AKPMVMLLGQYSTGKTTFIKHLLRTSY 222 (545)
Q Consensus 196 ~~~~V~lvG~~naGKSTLlN~Llg~~~ 222 (545)
.+.+++|+|+||||||||+|+|+|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccc
Confidence 355999999999999999999999875
No 433
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.59 E-value=1.3e-05 Score=90.69 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=41.3
Q ss_pred CCCCCC-hhhhhhhhccChHHHHHHHhcC---CCEEEE-----EeCCCCCCccHHHHHHHHHHhcCCCeEEEEecC
Q 009050 293 TPGVLS-GEKQRTQRAYDFTGVTSWFAAK---CDLILL-----LFDPHKLDISDEFKRVITSLRGHDDKIRVVLNK 359 (545)
Q Consensus 293 TPG~~s-gekq~v~~~~~~~~ia~~~~~~---aDliLl-----vlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK 359 (545)
.++.+| |++||+. +|++++.+ ++++|+ .+|... ...+.+++..+.+.+..+++|.|.
T Consensus 727 ~~~~LSGGekQRv~-------LAraL~~~p~~p~lLILDEPTsGLD~~~---~~~l~~lL~~L~~~G~tVIvisHd 792 (842)
T 2vf7_A 727 PATELSGGEAQRIK-------LATELRRSGRGGTVYVLDEPTTGLHPAD---VERLQRQLVKLVDAGNTVIAVEHK 792 (842)
T ss_dssp CGGGCCHHHHHHHH-------HHHTTSSCCSSCEEEEEECTTTTCCHHH---HHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CcccCCHHHHHHHH-------HHHHHHhCCCCCCEEEEECCCCCCCHHH---HHHHHHHHHHHHhCCCEEEEEcCC
Confidence 356677 7999998 89999886 577666 344322 456677888887778888888884
No 434
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=97.58 E-value=8.6e-05 Score=67.98 Aligned_cols=62 Identities=21% Similarity=0.332 Sum_probs=55.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCC--------CCCCHHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQ--------GYLGYREFIAAMQ 78 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~--------g~L~~~eF~~am~ 78 (545)
......|..+|++++|+|+.++.+.++...+++.+.+.+++..+|.+++ |.++.+||+..|.
T Consensus 108 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~G~i~~~eF~~~l~ 177 (180)
T 3mse_B 108 TFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDYML 177 (180)
T ss_dssp CHHHHHHHHHCTTCSSCBCHHHHHHHTTTSSCCHHHHHHHHHHHHTC---------CCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHcCCCCCHHHHHHHHHHhhhccCcccccccCCeeeHHHHHHHHH
Confidence 5678899999999999999999999999888999999999999999988 9999999987763
No 435
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.58 E-value=9.6e-05 Score=64.33 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+||++| +.++|..+|.+++|.|+.++...++...| ++...+..++.. +++|.++.+||..++.
T Consensus 1 sls~~e---l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~---~~~g~i~~~eF~~~~~ 65 (145)
T 2bl0_B 1 TASADQ---IQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQ---LNAKEFDLATFKTVYR 65 (145)
T ss_dssp CCCHHH---HHHHHHHHCTTCSSCEEGGGHHHHHHHTTCCCCHHHHHHHHHH---HTSSEECHHHHHHHHT
T ss_pred CCCHHH---HHHHHHHhCCCCcCccCHHHHHHHHHHhCCCCCHHHHHHHHHh---cCCCeEcHHHHHHHHH
Confidence 367777 99999999999999999999999999877 678888888887 7899999999987664
No 436
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.58 E-value=2e-05 Score=71.31 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=29.3
Q ss_pred cccccccccCc--eEEEEcCCCCChHHHHHHHHccc
Q 009050 188 LLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (545)
Q Consensus 188 ~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~ 221 (545)
++++++|+..+ +++|+|++|||||||++.|+|..
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 55666666665 99999999999999999999987
No 437
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.57 E-value=3.1e-05 Score=73.02 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=24.5
Q ss_pred CcccccccccCceEEEEcCCCCChHHHHHHHHccc
Q 009050 187 PLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTS 221 (545)
Q Consensus 187 ~~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~ 221 (545)
+.+++.++..+.+++|+|+||||||||+|+|+|..
T Consensus 10 ~~~~~~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 10 PTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45556666777799999999999999999999986
No 438
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.57 E-value=6.1e-05 Score=77.17 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=26.7
Q ss_pred ccccccccC-ceEEEEcCCCCChHHHHHHHHcccC
Q 009050 189 LTNSDFDAK-PMVMLLGQYSTGKTTFIKHLLRTSY 222 (545)
Q Consensus 189 l~~~~~~~~-~~V~lvG~~naGKSTLlN~Llg~~~ 222 (545)
++++++... .+++|+|+||||||||+|+|+|...
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 334433333 3999999999999999999999875
No 439
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=97.56 E-value=0.00012 Score=60.32 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHh-------cCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q 009050 13 KDHQKIYLEWFNYADSDGDGRITGNDATKFFAL-------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLIS 81 (545)
Q Consensus 13 ~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~-------s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~ 81 (545)
+++...+...|..+|. .+|+|+.++.+.++.. -.++...+.++...+|.|++|.++.+||+.+|.-..
T Consensus 5 ~~~~~~l~~~F~~fD~-~dg~Is~~El~~~l~~~~~~~lg~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~~ 79 (96)
T 1a4p_A 5 EHAMETMMFTFHKFAG-DKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLT 79 (96)
T ss_dssp HHHHHHHHHHHHHHHG-GGCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCCeECHHHHHHHHHHHcccccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3567789999999994 5689999999999975 146888999999999999999999999998876544
No 440
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=97.56 E-value=0.00013 Score=66.71 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=55.8
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 20 LEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 20 ~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
+.+|..+|.|++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||+.+|.-
T Consensus 112 ~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~~~~~ 173 (191)
T 1uhk_A 112 DALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLG 173 (191)
T ss_dssp HHHHHHHCTTCSSEECHHHHHHHHHHHTSCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3899999999999999999999998877 68999999999999999999999999888874
No 441
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=97.56 E-value=6.2e-05 Score=70.09 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
...+...|..+|.|++|+|+.++.+.+| ..| ++...+..|+..+|.|++|.++.+||+.+|.
T Consensus 125 ~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~ 188 (196)
T 3dtp_E 125 EDVIVNAFNLFDEGDGKCKEETLKRSLT-TWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQILT 188 (196)
T ss_dssp HHHHHHHHHTTCSSSSCCBHHHHHHHHH-HSSSCCCHHHHHHHHHSSCEETTEECHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCCCCCHHHHHHHHHHcCCCCCCEEeHHHHHHHHH
Confidence 4567889999999999999999999999 877 9999999999999999999999999987663
No 442
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=97.56 E-value=0.00011 Score=67.52 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=51.8
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 21 EWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 21 ~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.+|..+|.|++|+|+.++.+.++...| ++.+.+..++..+|.|++|.++.+||+.+|.-.
T Consensus 117 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~ 178 (195)
T 1qv0_A 117 AVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGF 178 (195)
T ss_dssp HHHHHTC----CEECHHHHHHHHHHHSSCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence 899999999999999999999998877 689999999999999999999999998888643
No 443
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=97.55 E-value=5.9e-05 Score=70.39 Aligned_cols=63 Identities=22% Similarity=0.469 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhc----CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALS----NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s----~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.......|+.+|.|++|+|+.++.+.++... +++.+.+..|+..+|.|++|.++.+||+.+|+
T Consensus 128 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l~ 194 (197)
T 3pm8_A 128 KEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMMS 194 (197)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHH
Confidence 3467889999999999999999999999877 47888999999999999999999999988774
No 444
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=97.54 E-value=0.00013 Score=63.52 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
+|+++.+.+.++|..+|++++|.|+.++...++...| ++...+..++.. ++|.++.+||..+|.-
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~----~~g~i~~~eF~~~~~~ 67 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE----APGPINFTMFLTMFGE 67 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT----SSSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHH
Confidence 6899999999999999999999999999999999877 455666665554 7899999999887753
No 445
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=97.54 E-value=0.0002 Score=66.22 Aligned_cols=65 Identities=22% Similarity=0.432 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhc--CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALS--NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s--~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
++.+.++|..+|.|++|.|+.++...++... .++...+..+|...|.|++|.++.+||..++.-.
T Consensus 26 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~ 92 (191)
T 1y1x_A 26 NQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFI 92 (191)
T ss_dssp TSCHHHHHHHHCTTCSSSBCHHHHHHHHCBTTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH
Confidence 5679999999999999999999999999654 4789999999999999999999999999887643
No 446
>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}
Probab=97.54 E-value=9.4e-05 Score=68.11 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHH-hcC---C------CHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFA-LSN---L------SRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~-~s~---L------~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
....+...|+.+|.|++|+|+.++.+.++. .-| + +.+.+..++..+|.|++|.++.+||+..|.
T Consensus 96 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~ 169 (179)
T 3a8r_A 96 FDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLL 169 (179)
T ss_dssp HHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSTTCCSEECHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccccccccccchHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 345788899999999999999999999997 555 4 677899999999999999999999987764
No 447
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Probab=97.52 E-value=4.5e-06 Score=69.79 Aligned_cols=65 Identities=26% Similarity=0.345 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc---C--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 14 DHQKIYLEWFNYADSDGDGRITGNDATKFFALS---N--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 14 ~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.....+..+|+.+|.+++|+|+.++.+.++... | ++.+.+..++..+|.+++|.++.+||+..|+
T Consensus 38 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 107 (108)
T 2kyc_A 38 KSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEMVQ 107 (108)
T ss_dssp CCSSSHHHHCSSSCSCCSSCCCGGGTTTSHHHHSSSCCCCCTTTTHHHHTTTCCSSSSCCCSSHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHh
Confidence 344567789999999999999999999888865 3 8889999999999999999999999987764
No 448
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Probab=97.51 E-value=0.0001 Score=62.93 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=54.1
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 19 YLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 19 y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+.++|..+|.+++|+|+-++...++...| ++.+.+..+|..+|.+++|.++.+||..+++
T Consensus 2 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~ 63 (134)
T 1jfj_A 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63 (134)
T ss_dssp HHHHHHHHCTTCSSEEEHHHHHHHHHTTCCSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCeEcHHHHHHHHH
Confidence 56899999999999999999999998865 5678999999999999999999999987663
No 449
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=97.51 E-value=0.00018 Score=75.70 Aligned_cols=69 Identities=23% Similarity=0.397 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.+++++.+.+.++|..+|.|++|.|+.++...++...| ++.+.+..++..+|.|++|.++.+||..+|.
T Consensus 305 ~ls~eei~el~~~F~~fD~D~dG~Is~~EL~~~L~~lg~~~s~eel~~Lf~~~D~DgdG~IsfeEFl~ll~ 375 (450)
T 3sg6_A 305 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA 375 (450)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTSSSSEEHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 68999999999999999999999999999999999865 7899999999999999999999999987764
No 450
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=97.49 E-value=0.00024 Score=66.21 Aligned_cols=70 Identities=16% Similarity=0.376 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHhhhCCC-CCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSD-GDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~-~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.|.-..+.+.++|..+|.+ ++|.|+-++...++...| .+.+.+..++...|.|++|.++.+||..+|..+
T Consensus 16 ~t~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~ 88 (204)
T 1jba_A 16 VGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLV 88 (204)
T ss_dssp CCHHHHHHHHHHHHHHHSSSTTCCEEHHHHHHHHHCCSSSTTHHHHHHHHHHHCCSSSSEECHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHH
Confidence 3455677889999999999 899999999999999877 778899999999999999999999999988754
No 451
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=97.47 E-value=0.00015 Score=77.73 Aligned_cols=68 Identities=19% Similarity=0.426 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc----------CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALS----------NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s----------~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+|+++...+.++|..+|.|++|.|+.++...++... +.+.+.+.+++..+|.|++|.++.+||..+|.
T Consensus 349 ~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~ 426 (504)
T 3q5i_A 349 TTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCM 426 (504)
T ss_dssp SCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHC--CCSCCCHHHHHHHHHHHHCTTCSSSEEHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHeeCCCCCCeEcHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 489999999999999999999999999998888765 46688999999999999999999999988764
No 452
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=97.46 E-value=6.7e-05 Score=66.81 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHhhhC--CCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYAD--SDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d--~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
.+|+++.+.+.++|..+| .+++|.|+.++...++...| ++...+.++|..+|.+ +|.++.+||..+|.-
T Consensus 2 ~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~d~~-~g~i~~~eF~~~~~~ 74 (159)
T 2ovk_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMG-EKAYKLEEILPIYEE 74 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHHTTCCCCHHHHHHTTCCSSTT-SCEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-CCeEcHHHHHHHHHH
Confidence 489999999999999999 99999999999999998876 6889999999999985 699999999877643
No 453
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.46 E-value=0.00013 Score=73.13 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=56.3
Q ss_pred HHHhcCCCEEEEEeCCCCCCcc-HHHHHHHHHHhcCCCeEEEEecCCCCCCHHH---HHHHHHHHHHHhcccccCCccEE
Q 009050 315 SWFAAKCDLILLLFDPHKLDIS-DEFKRVITSLRGHDDKIRVVLNKADQVDTQQ---LMRVYGALMWSLGKVLNTPEVVR 390 (545)
Q Consensus 315 ~~~~~~aDliLlvlD~~~~~~~-~~~~~~l~~L~~~~~~iiiVlNK~D~~~~~~---l~~v~~~l~~~l~k~~~~~~v~~ 390 (545)
+.++.++|.+|+|+|++++..+ ..+.+++..+...+.|+++|+||+|+.+..+ ..+... ..... + ...
T Consensus 74 r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~-~~~~~----g---~~~ 145 (302)
T 2yv5_A 74 RPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWIS-IYRDA----G---YDV 145 (302)
T ss_dssp TTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHH-HHHHT----T---CEE
T ss_pred HHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHH-HHHHC----C---CeE
Confidence 4468999999999999875433 3345677777777899999999999987643 222211 11111 1 234
Q ss_pred EEeeccCCCccCc
Q 009050 391 VYIGSFNDKPVNE 403 (545)
Q Consensus 391 v~iSa~~~~~~~~ 403 (545)
+++||++|.|+++
T Consensus 146 ~~~SA~~g~gi~~ 158 (302)
T 2yv5_A 146 LKVSAKTGEGIDE 158 (302)
T ss_dssp EECCTTTCTTHHH
T ss_pred EEEECCCCCCHHH
Confidence 8999999999876
No 454
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=97.46 E-value=0.00022 Score=62.38 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
...+...|+.+|++++|+|+.++.+.++...| ++.+.+..++..+ |++|.++.+||+.+|
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~l 144 (146)
T 2qac_A 83 VEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF--SSEDNIDYKLFCEDI 144 (146)
T ss_dssp HHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH--CSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc--CCCCcCcHHHHHHHH
Confidence 55688899999999999999999999999877 8999999999999 899999999998776
No 455
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.46 E-value=0.00027 Score=70.98 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHccc
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTS 221 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~ 221 (545)
.+|+|+|++||||||++..|++..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Confidence 389999999999999999999876
No 456
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=97.46 E-value=0.00023 Score=67.65 Aligned_cols=65 Identities=6% Similarity=0.117 Sum_probs=56.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISL 82 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~ 82 (545)
..+...|..+|.|++|+|+.++.+.++...| ++.+.+..++..+| |++|.++.+||+.+|..+..
T Consensus 117 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~l~~ 183 (220)
T 3sjs_A 117 ELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFA-RGMAFCDLNCWIAICAFAAQ 183 (220)
T ss_dssp HHHHHHHHHHCCSSTTEECHHHHHHHHHHHTCCCCHHHHHHHHHHHC---CCSEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHHHH
Confidence 4567889999999999999999999998765 89999999999999 99999999999999877653
No 457
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=97.46 E-value=0.0002 Score=68.38 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=62.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhc---CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALS---NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLVQDGHQ 88 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~~~g~~ 88 (545)
..+..+|..+|.|++|+|+.++.+.++... |++.+.+..++..+|.|++|.++.+||+.+|.-...-..+-+
T Consensus 133 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~~g~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~~~~~~~~~d~ 207 (226)
T 2lvv_A 133 FELTVMFDTMDKDGSLLLELQEFKEALPKLKEWGVDITDATTVFNEIDTNGSGVVTFDEFSCWAVTKKLQVCGDP 207 (226)
T ss_dssp HHHHHHHHHHSCSSCCEECHHHHHHHHHHHHHHTCCCCSCHHHHHHHCCSCSSCEEHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCCCCeEcHHHHHHHHHHHhhcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhcCCCCCCCc
Confidence 467889999999999999999999999875 888888999999999999999999999998877655444433
No 458
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.46 E-value=6.4e-05 Score=81.36 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=75.2
Q ss_pred ccccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccceEEEEeCCCccccCCceeEeecCCCCCCcccccccch
Q 009050 193 DFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGVDDRSIPGNTVAVQADMPFSGLTTFGTAFL 272 (545)
Q Consensus 193 ~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r~~i~~~~~~~~~~~g~t~~~~~~~~~~gl~~~~~~~~ 272 (545)
.+..+.+++|+|+||+|||||++.++|... ..+. ..+.+.+++... .+.... ..+ |+.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~G~------~vi~~~~ee~~~----~l~~~~-~~~-g~~------- 334 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENAC---ANKE------RAILFAYEESRA----QLLRNA-YSW-GMD------- 334 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHH---TTTC------CEEEEESSSCHH----HHHHHH-HTT-SCC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hCCC------CEEEEEEeCCHH----HHHHHH-HHc-CCC-------
Confidence 445556999999999999999999999763 2111 122233332110 000000 000 100
Q ss_pred hhhhhhcCchhhc--cCceeec-CCCCCC-hhhhhhhhccChHHHHHHHhcCCCEEEE----EeCCCCCC--ccHHHHHH
Q 009050 273 SKFECSQMPHSLL--EHITLVD-TPGVLS-GEKQRTQRAYDFTGVTSWFAAKCDLILL----LFDPHKLD--ISDEFKRV 342 (545)
Q Consensus 273 ~~~~~~~~~~~lL--~~v~liD-TPG~~s-gekq~v~~~~~~~~ia~~~~~~aDliLl----vlD~~~~~--~~~~~~~~ 342 (545)
..++. ..+.+.| .|..+| |++|++. ++++...+|+++|+ .+|....+ ....+.++
T Consensus 335 --------~~~~~~~g~~~~~~~~p~~LS~g~~q~~~-------~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~l 399 (525)
T 1tf7_A 335 --------FEEMERQNLLKIVCAYPESAGLEDHLQII-------KSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGV 399 (525)
T ss_dssp --------HHHHHHTTSEEECCCCGGGSCHHHHHHHH-------HHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHH
T ss_pred --------HHHHHhCCCEEEEEeccccCCHHHHHHHH-------HHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHH
Confidence 00010 1233444 456667 6777766 67888899998877 34443111 24455677
Q ss_pred HHHHhcCCCeEEEEecCC
Q 009050 343 ITSLRGHDDKIRVVLNKA 360 (545)
Q Consensus 343 l~~L~~~~~~iiiVlNK~ 360 (545)
++.+++.+.+++++.+-.
T Consensus 400 l~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 400 TGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHTTCEEEEEEECS
T ss_pred HHHHHhCCCEEEEEECcc
Confidence 788888889999988865
No 459
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=97.45 E-value=2.7e-05 Score=68.32 Aligned_cols=65 Identities=11% Similarity=0.213 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHh-cCCCCCCCCHHHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIA-DAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~-D~~~~g~L~~~eF~~am~Li 80 (545)
.+.+.++|..+|.+++|.|+-++...++...| ++...+..++..+ |.+++|.++.+||..+|...
T Consensus 3 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~~D~~~~g~i~~~eF~~~~~~~ 70 (148)
T 1m45_A 3 TRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVN 70 (148)
T ss_dssp CCCCTTCHHHHCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHC--CC--CCEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCeEcHHHHHHHHHHH
Confidence 34466789999999999999999999998876 6788999999999 99999999999999888765
No 460
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=97.44 E-value=0.00036 Score=61.72 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 9 GSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
-.+|+++...+..+|..+|.+++|.|+.++...++...| ++...+..++. +++|.++.+||..+|.-
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~----~~~g~i~~~eF~~~~~~ 78 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK----EAPGPLNFTMFLSIFSD 78 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHT----TSSSCCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH----hCCCcCcHHHHHHHHHH
Confidence 458999999999999999999999999999999998866 66777777774 47899999999887764
No 461
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=97.43 E-value=0.00018 Score=67.35 Aligned_cols=63 Identities=17% Similarity=0.315 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc-C--CCHHHHHHH----HHHhcCCCCCCCCHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFALS-N--LSRQDLKQV----WAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s-~--L~~~~L~~I----w~l~D~~~~g~L~~~eF~~am 77 (545)
........|..+|.|++|+|+.++.+.++... | ++.+.+..+ +..+|.|++|.++.+||+.+|
T Consensus 111 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~~~ 180 (208)
T 2ct9_A 111 RSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180 (208)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 56778899999999999999999999999874 5 889999888 999999999999999997654
No 462
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=97.42 E-value=3.5e-05 Score=71.40 Aligned_cols=61 Identities=26% Similarity=0.379 Sum_probs=55.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 18 IYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 18 ~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
....+|..+|.+++|+|+.++.+.++...|++.+.+..++..+|.|++|.++.+||..+|.
T Consensus 83 ~l~~~F~~~D~d~dG~Is~~El~~~l~~~g~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 143 (188)
T 1s6i_A 83 NLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMR 143 (188)
T ss_dssp STHHHHHHTTTTCSSEEEHHHHHHTTTTTTCCTTHHHHHHHHHCSSSSSEEETTHHHHTTS
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999977653
No 463
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=97.42 E-value=0.00036 Score=62.75 Aligned_cols=59 Identities=15% Similarity=0.326 Sum_probs=53.6
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhcC-------CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 22 WFNYADSDGDGRITGNDATKFFALSN-------LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 22 ~F~~~d~~~~g~i~g~~~~~~~~~s~-------L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
.|..+|.+++|.|+-++...++...| ++...+.+++..+|.+++|.++.+||..++.-+
T Consensus 6 ~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~ 71 (167)
T 1gjy_A 6 GYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL 71 (167)
T ss_dssp HHHHHHCCTTSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 48889999999999999999999855 588999999999999999999999999888654
No 464
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=97.40 E-value=0.00018 Score=68.67 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhc-CCC------HHHHHHHHHHh-----cCCCCCCCCHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALS-NLS------RQDLKQVWAIA-----DAKRQGYLGYREFIAAM 77 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s-~L~------~~~L~~Iw~l~-----D~~~~g~L~~~eF~~am 77 (545)
.+|++++..+.++|..+|.+++|+|+-++....+.++ |++ ...+..+|..+ |.+++|.++.+||..++
T Consensus 44 ~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~~ 123 (226)
T 2lvv_A 44 DKDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFR 123 (226)
T ss_dssp SCCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHHH
Confidence 5799999999999999999999999999999855554 544 34555555555 99999999999998875
Q ss_pred HHH
Q 009050 78 QLI 80 (545)
Q Consensus 78 ~Li 80 (545)
...
T Consensus 124 ~~~ 126 (226)
T 2lvv_A 124 LML 126 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 465
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=97.40 E-value=0.00051 Score=62.91 Aligned_cols=63 Identities=16% Similarity=0.334 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHh--------------cCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFAL--------------SNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~--------------s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
......+|..+|.+++|+|+.++.+.++.. ..++.+.+..+|..+|.|++|.++.+||..+|.
T Consensus 98 ~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 174 (190)
T 2l2e_A 98 NDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSK 174 (190)
T ss_dssp HHHHHHHHHHHCTTSCSCBCHHHHHHHHHHHHHHHHHHSCCCSSCCCTHHHHHHHHHHHTCCSSCCBCHHHHHHHHH
T ss_pred HHHHHHHHhHccCCCCCcCcHHHHHHHHHHHHHHhccccCcccccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 346778999999999999999999998876 147899999999999999999999999988774
No 466
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=97.39 E-value=0.00029 Score=65.70 Aligned_cols=70 Identities=17% Similarity=0.297 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHhhhCCC--CCCcccHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSD--GDGRITGNDATKFFALSN-LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~--~~g~i~g~~~~~~~~~s~-L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
.+|+++...+..+|..+|.+ ++|.|+.++...++.... .+...+.+++...|.+++|.++.+||..+|..
T Consensus 30 ~~s~~~~~~l~~~F~~~D~d~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~ 102 (207)
T 2ehb_A 30 PFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLGV 102 (207)
T ss_dssp SCCHHHHHHHHHHHHHHTTSSSCSSCEEHHHHHHHHHSCTTCCCHHHHHHHHHHCTTCSSEECHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHhccccccHHHHHHHHHHhcCCCCCeEeHHHHHHHHHH
Confidence 57899999999999999999 999999999999987632 33456788999999999999999999887763
No 467
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Probab=97.39 E-value=0.00019 Score=61.16 Aligned_cols=55 Identities=29% Similarity=0.569 Sum_probs=29.8
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHH
Q 009050 19 YLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIA 75 (545)
Q Consensus 19 y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~ 75 (545)
...+|+.+|.+++|+|+.++.+.++...|.+. +..++..+|.+++|.++.+||..
T Consensus 77 ~~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~--~~~~~~~~D~~~dg~i~~~ef~~ 131 (134)
T 1jfj_A 77 LKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEK--VAEQVMKADANGDGYITLEEFLE 131 (134)
T ss_dssp HHHHHHHHCCSSSSEEEHHHHHHHHTTTTCHH--HHHHHHHHHCSSSSEEEHHHHHH
T ss_pred HHHHHHHHCCCCCCccCHHHHHHHHHHhCHHH--HHHHHHHhCCCCCCcEeHHHHHH
Confidence 45555555555555555555555555544333 55555555555555555555543
No 468
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.36 E-value=0.00048 Score=68.78 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHccc
Q 009050 198 PMVMLLGQYSTGKTTFIKHLLRTS 221 (545)
Q Consensus 198 ~~V~lvG~~naGKSTLlN~Llg~~ 221 (545)
.+|+++|++||||||+++.|++..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999999999876
No 469
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=97.35 E-value=0.00043 Score=64.26 Aligned_cols=68 Identities=24% Similarity=0.330 Sum_probs=59.5
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
.-.+|+++...+..+|..+|.|++|+|+-.+...+|...| ++...+..+|..+ +|.++.+||..+|..
T Consensus 48 ~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~----~g~i~~~eF~~~~~~ 117 (196)
T 3dtp_E 48 FAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEA----PGPINFTMFLTIFGD 117 (196)
T ss_dssp SCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHHTTS----SSCCBHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHc----cCCCcHHHHHHHHHH
Confidence 3458999999999999999999999999999999999866 7778888887766 899999999877643
No 470
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.35 E-value=8.4e-05 Score=72.02 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=22.9
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHccc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~ 221 (545)
.++++++|+..+ +|+|+|++|||||||++.|.|..
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899998876 89999999999999999999853
No 471
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.35 E-value=0.0011 Score=67.81 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=31.8
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCC
Q 009050 313 VTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQV 363 (545)
Q Consensus 313 ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~ 363 (545)
+++++..+||++++ |-.. ..+..+.+..+...|..++++++-.+..
T Consensus 189 La~aL~~~Pdvill--DEp~---d~e~~~~~~~~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 189 LRSALREDPDIILV--GEMR---DLETIRLALTAAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHHHTTSCCSEEEE--SCCC---SHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred HHHHhhhCcCEEec--CCCC---CHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence 67788899999877 3221 2455555555666788999999976643
No 472
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=97.34 E-value=0.00033 Score=62.29 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHH----hcC--CCHHHHHHH-----------HHHhcCCCCCCCCHHHHHHHH
Q 009050 15 HQKIYLEWFNYADSDGDGRITGNDATKFFA----LSN--LSRQDLKQV-----------WAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 15 e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~----~s~--L~~~~L~~I-----------w~l~D~~~~g~L~~~eF~~am 77 (545)
+++.+..+|..+|.|++|.|+-++...++. ..| ++...+..+ +..+|.+++|.++.+||..++
T Consensus 2 ~~~~l~~~F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~ 81 (166)
T 3akb_A 2 YERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREEFVTGA 81 (166)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSSSCEEHHHHHHTH
T ss_pred HHHHHHHHHhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 567899999999999999999999998753 224 566666655 599999999999999998877
Q ss_pred HHH
Q 009050 78 QLI 80 (545)
Q Consensus 78 ~Li 80 (545)
.-.
T Consensus 82 ~~~ 84 (166)
T 3akb_A 82 VKR 84 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 473
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=97.33 E-value=0.00044 Score=65.74 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHhhhCCC--CCCcccHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSD--GDGRITGNDATKFFALSN-LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~--~~g~i~g~~~~~~~~~s~-L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
.+|+++...+..+|..+|.+ ++|.|+.++...++.... .....+.+++...|.+++|.++.+||..+|..
T Consensus 41 ~ls~~ei~~l~~~F~~~D~d~~~~G~I~~~El~~~l~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~ 113 (226)
T 2zfd_A 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSV 113 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSSCSSSBCHHHHHHHHHSCSSCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCCeEcHHHHHHHHhccCcccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHH
Confidence 58999999999999999999 999999999999987632 23345678999999999999999999887764
No 474
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=97.33 E-value=0.00039 Score=74.12 Aligned_cols=67 Identities=21% Similarity=0.384 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHh----cCC------------CHHHHHHHHHHhcCCCCCCCCHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFAL----SNL------------SRQDLKQVWAIADAKRQGYLGYREFI 74 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~----s~L------------~~~~L~~Iw~l~D~~~~g~L~~~eF~ 74 (545)
+|+++.+.+.++|..+|.|++|.|+.++...++.. .|+ ..+.+..++...|.|++|.++.+||.
T Consensus 325 ~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~Ef~ 404 (486)
T 3mwu_A 325 TTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFI 404 (486)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHTCCGGGHHHHTSSCHHHHHHHHHHHHCTTCCSSBCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCCceeeHHHHHHHHHHhhhhhcccchhcccccchhhHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence 47899999999999999999999999999655543 243 37789999999999999999999997
Q ss_pred HHH
Q 009050 75 AAM 77 (545)
Q Consensus 75 ~am 77 (545)
.++
T Consensus 405 ~~~ 407 (486)
T 3mwu_A 405 ASA 407 (486)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 475
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.32 E-value=5.4e-05 Score=75.94 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=30.9
Q ss_pred CcccccccccCc--eEEEEcCCCCChHHHHHHHHccc
Q 009050 187 PLLTNSDFDAKP--MVMLLGQYSTGKTTFIKHLLRTS 221 (545)
Q Consensus 187 ~~l~~~~~~~~~--~V~lvG~~naGKSTLlN~Llg~~ 221 (545)
++++++++..++ +++|+|++|||||||++.|+|..
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 367788887776 99999999999999999999875
No 476
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.32 E-value=0.00036 Score=73.17 Aligned_cols=71 Identities=23% Similarity=0.214 Sum_probs=40.3
Q ss_pred cCceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHHhcCCCeEEEEecCCCCCC
Q 009050 286 EHITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGHDDKIRVVLNKADQVD 364 (545)
Q Consensus 286 ~~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~~~~~~~~~l~~L~~~~~~iiiVlNK~D~~~ 364 (545)
..+.|+||||.+......... ...+ ..+-.+|.+++++|+.. ..+....++.+...-...-+|+||+|...
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~e---l~~i--~~~~~pd~vlLVvDa~t---gq~av~~a~~f~~~l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGE---LARL--KEVLGPDEVLLVLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDGDA 251 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHH---HHHH--HHHHCCSEEEEEEEGGG---TTHHHHHHHHHHHHTCCCEEEEESGGGCS
T ss_pred CCEEEEcCCCcccccHHHHHH---HHHh--hhccCCceEEEEEeccc---hHHHHHHHHHHHhcCCceEEEEeCcCCcc
Confidence 368899999987521111110 0001 11347999999999874 23334444444332223567899999754
No 477
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.31 E-value=0.00036 Score=71.48 Aligned_cols=106 Identities=20% Similarity=0.181 Sum_probs=63.3
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCCC----------ccHHHHHHHHHHhc----CCCe
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLD----------ISDEFKRVITSLRG----HDDK 352 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~~----------~~~~~~~~l~~L~~----~~~~ 352 (545)
.+.+|||+|..+-.+ ....+.++++.+|+|+|.+..+ ...+...++..+.. .+.|
T Consensus 194 ~l~iwDt~GQe~~r~-----------~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 194 HFKMFDVGGQRSERK-----------KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp EEEEEEECCSGGGGG-----------GGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred eEEEEeCCCchhhhH-----------HHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 467899999853111 1223468999999999998632 23445566666654 3679
Q ss_pred EEEEecCCCCCC--------------------HHHHHHHHHHHHHHhcccccCCccEEEEeeccCCCccCc
Q 009050 353 IRVVLNKADQVD--------------------TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPVNE 403 (545)
Q Consensus 353 iiiVlNK~D~~~--------------------~~~l~~v~~~l~~~l~k~~~~~~v~~v~iSa~~~~~~~~ 403 (545)
+++|+||+|+.. .++........+..+.+......+..+.+||+++.++.+
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 999999999842 122222222111122111012344557899999988775
No 478
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.31 E-value=0.0002 Score=71.79 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccC
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSY 222 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~ 222 (545)
+.+++|+|++|||||||+|+|+|...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 45999999999999999999999885
No 479
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=97.30 E-value=0.00034 Score=63.83 Aligned_cols=70 Identities=6% Similarity=0.043 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHhhhCC-----CC-C--CcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHH
Q 009050 9 GSCSKDHQKIYLEWFNYADS-----DG-D--GRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGY-LGYREFIAAMQL 79 (545)
Q Consensus 9 ~~ls~~e~~~y~~~F~~~d~-----~~-~--g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~-L~~~eF~~am~L 79 (545)
..+|+++...+.+.|..+|+ ++ + |.|+-++... +...|.+.. ..+|+.+.|.+++|. ++.+||..+|..
T Consensus 12 ~~ls~~~~~~l~~~F~~~D~~~~~~~~~~~~G~i~~~el~~-l~~~g~~~~-~~~l~~~~D~d~~G~~I~~~EF~~~~~~ 89 (183)
T 1dgu_A 12 TFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPELKANPF-KERICRVFSTSPAKDSLSFEDFLDLLSV 89 (183)
T ss_dssp CSCCHHHHHHHHHHHHHHSCSTTCSSCCCTTTCSCHHHHHT-STTSSSCTT-HHHHHHHHSCSSSSCCCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCccccccccccccCcCcHHHHHH-HHhhhcCcH-HHHHHHHhCCCCCCCEecHHHHHHHHHH
Confidence 45899999999999999999 67 8 9999999999 777776543 468999999999999 999999988864
Q ss_pred H
Q 009050 80 I 80 (545)
Q Consensus 80 i 80 (545)
.
T Consensus 90 ~ 90 (183)
T 1dgu_A 90 F 90 (183)
T ss_dssp H
T ss_pred h
Confidence 3
No 480
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=97.30 E-value=0.00013 Score=70.52 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCH--------HHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSR--------QDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~--------~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
.+|+.+.+.+..+|..+|.+++|.|+.++...++...|+.. ..+..+|..+|.+++|.++.+||...|
T Consensus 9 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~l~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~Ef~~~~ 84 (263)
T 2f33_A 9 QSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVL 84 (263)
T ss_dssp TTSCCCHHHHHHHHHHHCTTCSSSBCSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHTTGGGCCBCHHHHHHHT
T ss_pred hcCcccHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 57888899999999999999999999999999998765432 677899999999999999999998765
No 481
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=97.29 E-value=0.00021 Score=76.49 Aligned_cols=68 Identities=22% Similarity=0.448 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC----------CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN----------LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~----------L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
+|+++.+.+.++|..+|.|++|.|+.++...++...| .+.+.+.+++..+|.|++|.++.+||..+|.
T Consensus 340 ~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~G~I~~~EF~~~~~ 417 (494)
T 3lij_A 340 TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAM 417 (494)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSEECHHHHHHTTHHHHSSCCCCC--CHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHhCcCCCCeEcHHHHHHHHHHhcccccccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4889999999999999999999999999999888763 3478999999999999999999999988763
No 482
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=97.29 E-value=0.00038 Score=64.82 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=54.5
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhc----C---------------CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALS----N---------------LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s----~---------------L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
.....+|..+|.|++|+|+.++.+.++... | .+.+.+..++..+|.|++|.++.+||..+|
T Consensus 95 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~ 174 (204)
T 1jba_A 95 HKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGA 174 (204)
T ss_dssp HHHHHHHHHHCSSCSSCBCHHHHHHHHHHHHHHHHHSSCCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCccccccccCchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 356779999999999999999999988765 3 667889999999999999999999998877
Q ss_pred H
Q 009050 78 Q 78 (545)
Q Consensus 78 ~ 78 (545)
.
T Consensus 175 ~ 175 (204)
T 1jba_A 175 R 175 (204)
T ss_dssp T
T ss_pred H
Confidence 4
No 483
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=97.27 E-value=0.00038 Score=63.71 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=54.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHh----cC----------CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFAL----SN----------LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~----s~----------L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.....+|..+|.+++|+|+-++.+.++.. .| ++.+.+..+|..+|.|++|.++.+||..+|.
T Consensus 99 ~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 174 (190)
T 1fpw_A 99 EKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSK 174 (190)
T ss_dssp HHHHHHHHHHCSSCSSEEEHHHHHHHHHHHHTTSCSTTSSSCCCCCHHHHHHHHHHHHTTTCSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHhccccCcccccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 35677999999999999999999999987 23 7788999999999999999999999988764
No 484
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.27 E-value=0.00039 Score=69.64 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCChHHHHHHHHcccC
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTSY 222 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~~ 222 (545)
+.+++|+|+||||||||+|+|+ ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4589999999999999999999 664
No 485
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=97.27 E-value=0.00044 Score=73.58 Aligned_cols=62 Identities=23% Similarity=0.411 Sum_probs=57.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
......|+.+|.|++|+|+.++...++...+++.+.+.+++.-+|.|+||.++.+||..+|.
T Consensus 418 ~~~~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~ 479 (484)
T 3nyv_A 418 ERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLL 479 (484)
T ss_dssp HHHHHHHHHHCTTCCSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCCSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999988875
No 486
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=97.27 E-value=0.00037 Score=61.41 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=59.0
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 8 IGSCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 8 ~~~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
...+|+++.+.+..+|..+|.+++|.|+.++...++...| ++...+..++..+ +|.++.+||..+|
T Consensus 7 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~----~g~i~~~eF~~~~ 74 (153)
T 2ovk_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC----PGQLNFTAFLTLF 74 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS----SSCCCSHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCCCCHHHHHHHH
Confidence 4679999999999999999999999999999999998866 7888888888877 8999999997655
No 487
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=97.26 E-value=0.00042 Score=63.09 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhc----C------CCH----HHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALS----N------LSR----QDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s----~------L~~----~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
......+|+.+|.|++|+|+.++.+.++... | ++. +.+..++..+|.|++|.++.+||..+|
T Consensus 91 ~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~ 166 (183)
T 1s6c_A 91 HEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESX 166 (183)
T ss_dssp HHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHH
No 488
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=97.26 E-value=0.00044 Score=63.29 Aligned_cols=64 Identities=23% Similarity=0.332 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHh----c----------CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFAL----S----------NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~----s----------~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
......+|..+|.+++|+|+.++.+.++.. . .++.+.+..+|..+|.|++|.++.+||..+|.-
T Consensus 98 ~~~~~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~ef~~~~~~ 175 (190)
T 1g8i_A 98 DEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKA 175 (190)
T ss_dssp HHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHC-----CCGGGSSHHHHHHHHHHHHCSSCSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCeECHHHHHHHHHHHHHHhCCccCCccccccHHHHHHHHHHHhcCCCCCcEeHHHHHHHHHh
Confidence 345678899999999999999999999877 2 367889999999999999999999999988764
No 489
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=97.25 E-value=0.00011 Score=68.90 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSNLSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
.+|+++...+..+|..+|.|++|+|+.++...++ ..|+.. ...+|+...|.+++|.++.+||..+|..
T Consensus 22 ~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~~-~lg~~~-~~~~l~~~~d~~~~g~i~~~EF~~~~~~ 89 (208)
T 2ct9_A 22 GFSHSQITRLYSRFTSLDKGENGTLSREDFQRIP-ELAINP-LGDRIINAFFSEGEDQVNFRGFMRTLAH 89 (208)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECTGGGGGCH-HHHTST-THHHHHHTTSCTTCSCEEHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCCCC-cHHHHHHHHcCCCCCcCcHHHHHHHHHh
Confidence 5899999999999999999999999999988864 445443 2367899999999999999999877643
No 490
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=97.25 E-value=0.00016 Score=65.14 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHhhhCC--CCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 10 SCSKDHQKIYLEWFNYADS--DGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 10 ~ls~~e~~~y~~~F~~~d~--~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
.||++|.+.+++.|..+|. +++|+|+..+...+|+.-| ++...+.++.. .|.+++|.++.+||..+|.
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~~~~-~d~~~~g~i~f~eFl~~~~ 73 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGG-TKKMGEKAYKLEEILPIYE 73 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHTTTC-CSSTTSCEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHc-ccccCCCcccHHHHHHHHH
Confidence 5899999999999999994 8999999999999999877 45777777644 3666789999999987664
No 491
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=97.25 E-value=0.00062 Score=63.94 Aligned_cols=63 Identities=29% Similarity=0.444 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC-------CCH-HHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALSN-------LSR-QDLKQVWAIADAKRQGYLGYREFIAAMQ 78 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~-------L~~-~~L~~Iw~l~D~~~~g~L~~~eF~~am~ 78 (545)
......+|..+|.|++|+|+-++.+.++...+ +.. +.+..++..+|.|++|.++.+||..+|.
T Consensus 92 ~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 162 (211)
T 2ggz_A 92 EQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFINGMA 162 (211)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHTTSSCCCSCTHHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 34677899999999999999999999998743 444 5689999999999999999999988775
No 492
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=97.24 E-value=0.00064 Score=61.42 Aligned_cols=63 Identities=16% Similarity=0.288 Sum_probs=54.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
..+...|..+|.+++|+|+.++.+.++...| ++.+.+..++..+| +++|.++.+||..+|.-.
T Consensus 77 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-d~dg~i~~~eF~~~~~~~ 141 (173)
T 1alv_A 77 KKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYS-DEGGNMDFDNFISCLVRL 141 (173)
T ss_dssp HHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHHHT-CSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHH
Confidence 3466789999999999999999999998766 78899999999999 999999999998887643
No 493
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=97.24 E-value=0.00049 Score=63.76 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHhcC---------CCHHHHHHHHHHhcC-CCCCCCCHHHHHHHHHHH
Q 009050 11 CSKDHQKIYLEWFNYADSDGDGRITGNDATKFFALSN---------LSRQDLKQVWAIADA-KRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 11 ls~~e~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~---------L~~~~L~~Iw~l~D~-~~~g~L~~~eF~~am~Li 80 (545)
.+.........+|..+|.+++|+|+.++...++...+ ++.+.+..++..+|. |++|.++.+||..+|.-+
T Consensus 103 ~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~dg~Is~~EF~~~~~~~ 182 (204)
T 3e3r_A 103 MSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGV 182 (204)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHCCCTTCHHHHTTSSCHHHHHHHHHHHHSCSSCCSCEEHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHhCcCCCCeEeHHHHHHHHccccCCccccCCCChHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHc
Confidence 3445567888999999999999999999999997432 666789999999998 999999999999988876
Q ss_pred HH
Q 009050 81 SL 82 (545)
Q Consensus 81 ~~ 82 (545)
..
T Consensus 183 ~~ 184 (204)
T 3e3r_A 183 SA 184 (204)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 494
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.24 E-value=0.0001 Score=67.58 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHccc
Q 009050 197 KPMVMLLGQYSTGKTTFIKHLLRTS 221 (545)
Q Consensus 197 ~~~V~lvG~~naGKSTLlN~Llg~~ 221 (545)
+..++|+|+||+|||||++++++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999876
No 495
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.24 E-value=0.00017 Score=67.54 Aligned_cols=47 Identities=23% Similarity=0.346 Sum_probs=29.5
Q ss_pred cccccccccCceEEEEcCCCCChHHHHHHHHcccCCCCCCCCCCcccc
Q 009050 188 LLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDR 235 (545)
Q Consensus 188 ~l~~~~~~~~~~V~lvG~~naGKSTLlN~Llg~~~p~~~v~~~p~t~r 235 (545)
...+.....+..|+|+||+|||||||+|.|++... +......+.|||
T Consensus 10 ~~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~-~~~~~~vs~TTR 56 (197)
T 3ney_A 10 GRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP-EKFVYPVPYTTR 56 (197)
T ss_dssp ------CCSCCEEEEECCTTSSHHHHHHHHHHHCT-TTEECCCCEECS
T ss_pred ccccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC-ccEEeeeccccc
Confidence 33444455566999999999999999999998752 123334444444
No 496
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=97.24 E-value=0.00051 Score=62.93 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=55.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhc----C--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALS----N--LSRQDLKQVWAIADAKRQGYLGYREFIAAMQL 79 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s----~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~L 79 (545)
..+...|+.+| |++|+|+.++.+.++... | ++.+.+..+...+| +++|.++.+||+..|.-
T Consensus 76 ~~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~~~d-d~dG~I~~~EF~~~~~~ 142 (174)
T 2i7a_A 76 VHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS-DSVGRVSFPSLVCFLMR 142 (174)
T ss_dssp HHHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHHHHS-CTTSEECHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHc-CCCCeEcHHHHHHHHHH
Confidence 46788999999 999999999999999887 6 78999999999999 99999999999887754
No 497
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=97.23 E-value=0.00043 Score=61.99 Aligned_cols=59 Identities=17% Similarity=0.310 Sum_probs=52.8
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhcC-------CCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 009050 22 WFNYADSDGDGRITGNDATKFFALSN-------LSRQDLKQVWAIADAKRQGYLGYREFIAAMQLI 80 (545)
Q Consensus 22 ~F~~~d~~~~g~i~g~~~~~~~~~s~-------L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li 80 (545)
-|..+|.+++|.|+-++...++...| ++...+.+++..+|.+++|.++.+||..++.-+
T Consensus 4 ~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~ 69 (165)
T 1k94_A 4 TYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAAL 69 (165)
T ss_dssp HHHHHHHGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCCHHHHHHHHHHhccccCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence 48889999999999999999998865 488999999999999999999999998887654
No 498
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=97.23 E-value=0.00048 Score=71.36 Aligned_cols=61 Identities=25% Similarity=0.422 Sum_probs=55.5
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 009050 17 KIYLEWFNYADSDGDGRITGNDATKFFALSN--LSRQDLKQVWAIADAKRQGYLGYREFIAAM 77 (545)
Q Consensus 17 ~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s~--L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am 77 (545)
......|+.+|.|++|+|+.++.+.+|...| |+.+.+.+++.-+|.|+||.++.+||+..|
T Consensus 375 eeLreAFk~fDkDgdG~IS~eELr~vL~~lGe~LSdeEIdeLfke~D~DgDGkIsyeEFvkmM 437 (440)
T 3u0k_A 375 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 437 (440)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHh
Confidence 4567889999999999999999999998865 899999999999999999999999998765
No 499
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=97.22 E-value=0.0004 Score=65.79 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhc---CCCHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q 009050 16 QKIYLEWFNYADSDGDGRITGNDATKFFALS---NLSRQDLKQVWAIADAKRQGYLGYREFIAAMQLISLV 83 (545)
Q Consensus 16 ~~~y~~~F~~~d~~~~g~i~g~~~~~~~~~s---~L~~~~L~~Iw~l~D~~~~g~L~~~eF~~am~Li~~~ 83 (545)
.......|..+|.|++|+|+.++.+.++... +++.+.+..++..+|.|++|.++.+||+..|.-....
T Consensus 129 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~~~~~~ 199 (219)
T 3cs1_A 129 FFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASAVKLD 199 (219)
T ss_dssp HHHHHHHHHTTCSSSSSEEEHHHHHHHHHHHHHHTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhcccCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHhCCC
Confidence 3457889999999999999999999999765 5899999999999999999999999999888755443
No 500
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.21 E-value=0.00047 Score=70.89 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=43.0
Q ss_pred CceeecCCCCCChhhhhhhhccChHHHHHHHhcCCCEEEEEeCCCCC----------CccHHHHHHHHHHhc----CCCe
Q 009050 287 HITLVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKL----------DISDEFKRVITSLRG----HDDK 352 (545)
Q Consensus 287 ~v~liDTPG~~sgekq~v~~~~~~~~ia~~~~~~aDliLlvlD~~~~----------~~~~~~~~~l~~L~~----~~~~ 352 (545)
.+.++||+|..+-.+ ....+.++++.+|+|+|.+.. ....+...++..+.. .+.|
T Consensus 202 ~l~i~Dt~Gq~~~r~-----------~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p 270 (362)
T 1zcb_A 202 PFKMVDVGGQRSERK-----------RWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS 270 (362)
T ss_dssp EEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEEEeccchhhhhh-----------hHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC
Confidence 467899999854111 112236899999999999862 223445566666644 3679
Q ss_pred EEEEecCCCCC
Q 009050 353 IRVVLNKADQV 363 (545)
Q Consensus 353 iiiVlNK~D~~ 363 (545)
+++++||+|+.
T Consensus 271 iILv~NK~DL~ 281 (362)
T 1zcb_A 271 IILFLNKTDLL 281 (362)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEEChhhh
Confidence 99999999975
Done!