BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009051
         (545 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score =  148 bits (374), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 66/71 (92%), Positives = 69/71 (97%)

Query: 411 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAVITT 470
           VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT GC VRKHVERA+TDPKAV+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67

Query: 471 YEGKHNHDVPA 481
           YEGKHNHD+PA
Sbjct: 68  YEGKHNHDLPA 78



 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 250 DDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVER-SLDGQVTEIIYKGQHNHPPP 308
           DD Y WRKYGQK VKG+ +PRSYYKCT P C V+K VER + D +     Y+G+HNH  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 64/75 (85%)

Query: 408 RIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAV 467
           RI+V T +  D+++DGYRWRKYGQK VKG+PYPRSYY+C++ GC V+KHVER+S D K +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 468 ITTYEGKHNHDVPAG 482
           ITTYEGKH+HD+P G
Sbjct: 62  ITTYEGKHDHDMPPG 76



 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 249 ADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVER-SLDGQVTEIIYKGQHNHPP 307
            +D Y WRKYGQK VKGS +PRSYY+C+ P CPVKK VER S D ++    Y+G+H+H  
Sbjct: 14  VNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDM 73

Query: 308 P 308
           P
Sbjct: 74  P 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.125    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,034,691
Number of Sequences: 62578
Number of extensions: 526563
Number of successful extensions: 1051
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1047
Number of HSP's gapped (non-prelim): 6
length of query: 545
length of database: 14,973,337
effective HSP length: 104
effective length of query: 441
effective length of database: 8,465,225
effective search space: 3733164225
effective search space used: 3733164225
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)