Query 009051
Match_columns 545
No_of_seqs 339 out of 1213
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 17:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1.4E-36 4.8E-41 252.7 6.4 76 407-482 1-76 (76)
2 1wj2_A Probable WRKY transcrip 100.0 2.5E-36 8.7E-41 252.2 4.8 75 407-481 4-78 (78)
3 2ayd_A WRKY transcription fact 100.0 1.2E-29 4E-34 211.2 4.8 63 247-309 12-75 (76)
4 1wj2_A Probable WRKY transcrip 100.0 1.4E-29 4.8E-34 211.6 4.1 62 247-308 15-77 (78)
5 2rpr_A Flywch-type zinc finger 77.9 1.5 5.1E-05 36.1 3.2 59 409-480 13-74 (87)
6 2rpr_A Flywch-type zinc finger 61.9 3 0.0001 34.2 1.6 48 249-308 24-74 (87)
7 1cz6_A Protein (androctonin); 30.0 12 0.00042 25.0 0.3 8 442-449 16-23 (26)
8 1xiw_B T-cell surface glycopro 11.9 76 0.0026 25.8 1.2 27 421-447 17-53 (79)
9 1qxn_A SUD, sulfide dehydrogen 10.5 82 0.0028 27.1 1.0 23 417-439 110-133 (137)
10 3ukx_C Bimax2 peptide; arm rep 9.8 96 0.0033 21.1 0.9 13 378-390 15-27 (28)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=1.4e-36 Score=252.68 Aligned_cols=76 Identities=66% Similarity=1.282 Sum_probs=73.6
Q ss_pred CcEEEeeccccccCcccchhhhcccccccCCCCccccccccCCCCCcccceeecCCCCCEEEEEEecccCCCCCCC
Q 009051 407 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAVITTYEGKHNHDVPAG 482 (545)
Q Consensus 407 prvvv~t~se~d~~dDGy~WRKYGQK~IkGn~~PRsYYrCt~~gC~arK~Ver~~~D~~~~~~TY~G~HnH~~P~~ 482 (545)
.||+|+|.+++++++|||+|||||||.|||++|||+|||||++||+|+|||||+.+|+.+|+|||+|+|||+.|.+
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999964
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=2.5e-36 Score=252.20 Aligned_cols=75 Identities=88% Similarity=1.411 Sum_probs=69.9
Q ss_pred CcEEEeeccccccCcccchhhhcccccccCCCCccccccccCCCCCcccceeecCCCCCEEEEEEecccCCCCCC
Q 009051 407 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAVITTYEGKHNHDVPA 481 (545)
Q Consensus 407 prvvv~t~se~d~~dDGy~WRKYGQK~IkGn~~PRsYYrCt~~gC~arK~Ver~~~D~~~~~~TY~G~HnH~~P~ 481 (545)
.+|+|+|.+++++++|||+|||||||.|||++|||+|||||++||+|+|+|||+.+|+.+|+|||+|+|||+.|+
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.95 E-value=1.2e-29 Score=211.18 Aligned_cols=63 Identities=56% Similarity=1.088 Sum_probs=59.3
Q ss_pred CCCCCCCccccccccccCCCCCCCCcccccCCCcCcccceeecC-CCCEEEEeeCCCCCCCCCC
Q 009051 247 KPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHPPPQ 309 (545)
Q Consensus 247 ~~~dDGy~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vqrs~-dg~i~~i~Y~G~HnH~~P~ 309 (545)
...+|||+|||||||.|||+++||+|||||+.+|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus 12 ~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 12 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 35789999999999999999999999999999999999999986 6789999999999999985
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.95 E-value=1.4e-29 Score=211.58 Aligned_cols=62 Identities=56% Similarity=1.061 Sum_probs=58.6
Q ss_pred CCCCCCCccccccccccCCCCCCCCcccccCCCcCcccceeecC-CCCEEEEeeCCCCCCCCC
Q 009051 247 KPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHPPP 308 (545)
Q Consensus 247 ~~~dDGy~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vqrs~-dg~i~~i~Y~G~HnH~~P 308 (545)
...+|||+|||||||.|||+++||+|||||+.+|+|+|+|||+. |+.++.|+|+|+|||+.|
T Consensus 15 ~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 35789999999999999999999999999999999999999975 778999999999999988
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=77.90 E-value=1.5 Score=36.07 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=36.7
Q ss_pred EEEeeccccccCcccchhhhcccccccCCCCccccccccC---CCCCcccceeecCCCCCEEEEEEecccCCCCC
Q 009051 409 IIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---TGCNVRKHVERASTDPKAVITTYEGKHNHDVP 480 (545)
Q Consensus 409 vvv~t~se~d~~dDGy~WRKYGQK~IkGn~~PRsYYrCt~---~gC~arK~Ver~~~D~~~~~~TY~G~HnH~~P 480 (545)
+|...+...-++-|||...+--+ ...+.|.+|+. .+|.||=.... ++ + ...+.|||+..
T Consensus 13 fv~s~rG~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 13 FLRTSLGGRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPD 74 (87)
T ss_dssp EEEETTTEEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCC
T ss_pred EEEcCCCCcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCc
Confidence 33333344456789998876422 12368999985 58999855443 22 2 34688999643
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=61.90 E-value=3 Score=34.21 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=30.7
Q ss_pred CCCCCccccccccccCCCCCCCCcccccC---CCcCcccceeecCCCCEEEEeeCCCCCCCCC
Q 009051 249 ADDPYNWRKYGQKHVKGSEFPRSYYKCTH---PNCPVKKKVERSLDGQVTEIIYKGQHNHPPP 308 (545)
Q Consensus 249 ~dDGy~WRKYGQK~IkGs~~pRsYYrCt~---~~C~akK~Vqrs~dg~i~~i~Y~G~HnH~~P 308 (545)
.-|||...+--+ ...+.|.+|+. .+|.|+=.... ++ |+..+.|||++.
T Consensus 24 v~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 24 VHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCCC
T ss_pred EECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCCc
Confidence 348887765321 12368999996 37999744332 22 445789999764
No 7
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=29.96 E-value=12 Score=24.98 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.6
Q ss_pred ccccccCC
Q 009051 442 SYYKCTTT 449 (545)
Q Consensus 442 sYYrCt~~ 449 (545)
+|||||+.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999964
No 8
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=11.94 E-value=76 Score=25.81 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=18.8
Q ss_pred cccchhhhccccc--------ccC--CCCcccccccc
Q 009051 421 DDGYRWRKYGQKV--------VKG--NPYPRSYYKCT 447 (545)
Q Consensus 421 dDGy~WRKYGQK~--------IkG--n~~PRsYYrCt 447 (545)
..++.|-|-|... +.| ..-||+||.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 5668899987642 332 34599999993
No 9
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=10.55 E-value=82 Score=27.06 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=19.2
Q ss_pred cccCcccch-hhhcccccccCCCC
Q 009051 417 VDLLDDGYR-WRKYGQKVVKGNPY 439 (545)
Q Consensus 417 ~d~~dDGy~-WRKYGQK~IkGn~~ 439 (545)
+.+++.||. |++.|-..++++++
T Consensus 110 v~~l~GG~~~W~~~g~p~~~~~~~ 133 (137)
T 1qxn_A 110 IYNSEGGMDKWLEEGLPSLDRSHH 133 (137)
T ss_dssp EEEESSCHHHHHHTTCCEECCCCC
T ss_pred eEEEcCcHHHHHHCCCCccccccc
Confidence 446788987 99999999999875
No 10
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=9.85 E-value=96 Score=21.05 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=8.3
Q ss_pred CCCCCchhhcccc
Q 009051 378 KDEDEPDAKRRST 390 (545)
Q Consensus 378 ~d~dep~~KRr~~ 390 (545)
+|+|+|-.|||..
T Consensus 15 dddddppkkrrrl 27 (28)
T 3ukx_C 15 DDDDDPPKKRRRL 27 (28)
T ss_dssp CCSSSCCSCCCCC
T ss_pred ccCCCchhhhhcc
Confidence 4566777777653
Done!