BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009052
(545 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/509 (69%), Positives = 407/509 (79%), Gaps = 11/509 (2%)
Query: 9 EDVDNNNNNNNNNYEYGSSPQPRSADDHSDSKPQHGSRDYERESSRSREKEKEKGRDRDR 68
ED + N + Y+ + + +D DSKP+ SRD+ERE+SRS+++E+EKGRD+DR
Sbjct: 5 EDHEGNGTVADAIYDEENGGRDGEIEDQLDSKPKRESRDHERETSRSKDREREKGRDKDR 64
Query: 69 DRDRDRTR-EKDRDREKSRDMDREKSRDREKDREKDRHHRD-RHRERSRERSERRKDRDD 126
+RD + +R +DRD EKS+ E+SRD+++D ++RHHR RHR+ SRER ERR+
Sbjct: 65 ERDSEVSRRSRDRDGEKSK----ERSRDKDRDH-RERHHRSSRHRDHSRERGERRERGGR 119
Query: 127 DDHYRSRDYDRRKDYDRDREDRHKRRSQSRSRGRSEHRSRSRSRSRSKSKRISGFDMAPP 186
DD R DR D RD + R R +R+SGFDMAPP
Sbjct: 120 DDDDYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSERRTRSRSPSKSKQRVSGFDMAPP 179
Query: 187 ASAMLAAGAGAAAAGQIPGANPAIPG--MFPNMFPLVTGQQFGALPVMPVQAMTQQATRH 244
ASAMLAAGA A GQ+P A P +PG MFPNMFPL TGQ FG L +MP+QAMTQQATRH
Sbjct: 180 ASAMLAAGA--AVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRH 237
Query: 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVE 304
ARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKKFAFVEMRSVE
Sbjct: 238 ARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVE 297
Query: 305 EASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEG 364
EASNAM+LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQP+P+LNLAAVGLTPG++GGLEG
Sbjct: 298 EASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEG 357
Query: 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 424
PDRIFVGGLPYYFTE+Q+RELLESFG L+GFDLVKDRETGNSKGYAFCVYQDLSVTDIAC
Sbjct: 358 PDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 417
Query: 425 AALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLT 484
AALNGIKMGDKTLTVRRANQG KPEQE+VLLHAQQQIA QR+MLQPG+V + VVCLT
Sbjct: 418 AALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLT 477
Query: 485 QVVSADELKDDEEYEEILEDMRQEGGKFA 513
QVV+ DEL+DDEEY +I+EDMRQEGGKF
Sbjct: 478 QVVTEDELRDDEEYGDIMEDMRQEGGKFG 506
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 632 bits (1629), Expect = e-180, Method: Compositional matrix adjust.
Identities = 371/519 (71%), Positives = 410/519 (78%), Gaps = 19/519 (3%)
Query: 1 MADYEVNGEDVDNNNNNNNNNYE----YGSSPQPRSADDHSDSKPQHGSRDYE--RESSR 54
M DYE NGED+DN ++ + +G P P DD+SDSK QH SR+ E R+SSR
Sbjct: 1 MPDYEGNGEDIDNYTGGSSPPPKSRSSHGHGPTP---DDYSDSKSQHSSRENEKDRDSSR 57
Query: 55 SREKEKEKGRDRDRDRDRDRTREKDRDREKSRDMDREKSRDREKDREKDRHHRDRHRERS 114
SREK++E+ + H
Sbjct: 58 SREKDRER-----GRDKDRDRDRDRDRGRDRDRGRDRDKDREREKDRDRHHGDRHRDRSD 112
Query: 115 RERSERRKDRDDDDHYRSRDYDRRKDYDRDREDRHKRRSQSRSRGRSEHRSRSRSRSRSK 174
R ER +DRDDDD +R+RDYD+++++ +DRE RH+ RS+SR R SEHRSRSRSRSRSK
Sbjct: 113 RREKERTRDRDDDDRHRTRDYDQQREHAKDRESRHRHRSRSRGR--SEHRSRSRSRSRSK 170
Query: 175 SKRISGFDMAPPASAMLAAGAGAAAAGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPV 234
SKRISGFDMAPP SAML AAAGQ+PG NP IPGMFPNMFPL +GQ FGALPVMP+
Sbjct: 171 SKRISGFDMAPPTSAMLPGIT--AAAGQVPGTNPPIPGMFPNMFPLASGQ-FGALPVMPI 227
Query: 235 QAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK 294
QAMTQQATRHARRVYVGGLP ANEQSVATFFS VM+AIGGNTAGPGDAVVNVYIN+EKK
Sbjct: 228 QAMTQQATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKK 287
Query: 295 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL 354
FAFVEMRSVEEASNAMALDGIIFEGAP KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL
Sbjct: 288 FAFVEMRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL 347
Query: 355 TPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 414
+PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVY
Sbjct: 348 SPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 407
Query: 415 QDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPG 474
QD+SVTDIACAALNGIKMGDKTLTVRRANQG QPKPEQESVLLHAQQQIALQRLMLQP
Sbjct: 408 QDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESVLLHAQQQIALQRLMLQPA 467
Query: 475 SVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA 513
++ +KV+ LT+V+SADEL DDE+Y++ILEDMR E GKF
Sbjct: 468 TLATKVLSLTEVISADELNDDEDYQDILEDMRTECGKFG 506
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 598 bits (1541), Expect = e-170, Method: Compositional matrix adjust.
Identities = 305/357 (85%), Positives = 327/357 (91%), Gaps = 3/357 (0%)
Query: 157 SRGRSEHRSRSRSRSRSKSKRISGFDMAPPASAMLAAGAGAAAAGQIPGANPAIPGMFPN 216
SRGRSEHRS+SRSRS SKSKRISGFDMAPP +A+L AA GQ+PG NPAIPG+F N
Sbjct: 135 SRGRSEHRSKSRSRSPSKSKRISGFDMAPPTTALLPGATDAA--GQVPGTNPAIPGLFSN 192
Query: 217 MFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGN 276
MFPL + QFGALP+MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFS VM AIGGN
Sbjct: 193 MFPLAS-SQFGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGN 251
Query: 277 TAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAA 336
TAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDG+IFEG PVKVRRPSDYNPSLAA
Sbjct: 252 TAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAA 311
Query: 337 TLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFD 396
TLGPSQP+PNLNLAAVG TPGS+GGLEGPDRIFVGGLPYYFTE+QIRELLESFG LRGFD
Sbjct: 312 TLGPSQPSPNLNLAAVGSTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFD 371
Query: 397 LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV 456
LVKDRETGNSKGYAFCVYQD+SVTDIACAALNGIKMGDKTLTVRRANQG QP PEQESV
Sbjct: 372 LVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESV 431
Query: 457 LLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA 513
LLHAQQQIALQR MLQPG++ +KV+CLT+VV+ DEL DD++Y++ILEDMR E KF
Sbjct: 432 LLHAQQQIALQRFMLQPGALATKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFG 488
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 590 bits (1522), Expect = e-168, Method: Compositional matrix adjust.
Identities = 304/356 (85%), Positives = 321/356 (90%), Gaps = 5/356 (1%)
Query: 160 RSEHRSRSRSRSRSKSKRISGFDMAPPASAMLAAGAGAAAAGQIPGA--NPAIPGMFPNM 217
+SEHRSRSRSRSRSKSKR SGFDMAPP + A AAAGQ+P IPGMF NM
Sbjct: 170 KSEHRSRSRSRSRSKSKRRSGFDMAPPD---MLAATAVAAAGQVPSVPTTATIPGMFSNM 226
Query: 218 FPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNT 277
FP+V GQQ GALPV+PVQAMTQQATRHARRVYVGGLPPTANEQSV+TFFSQVM+AIGGNT
Sbjct: 227 FPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNT 286
Query: 278 AGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAAT 337
AGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGII EG PVKVRRP+DYNPSLAAT
Sbjct: 287 AGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAAT 346
Query: 338 LGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 397
LGPSQPNPNLNL AVGL+ GS GGLEGPDRIFVGGLPYYFTE QIRELLESFGPLRGF+L
Sbjct: 347 LGPSQPNPNLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNL 406
Query: 398 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVL 457
VKDRETGNSKGYAFCVYQD SVTDIACAALNGIKMGDKTLTVRRA QGA QPKPEQE VL
Sbjct: 407 VKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVL 466
Query: 458 LHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA 513
L+AQQQIALQRLM QPG P+K+VCLTQVV+AD+L+DDEEY EI+EDMRQEGGKF
Sbjct: 467 LYAQQQIALQRLMFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFG 522
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 555 bits (1429), Expect = e-157, Method: Compositional matrix adjust.
Identities = 331/468 (70%), Positives = 384/468 (82%), Gaps = 23/468 (4%)
Query: 53 SRSREKEKEKGRDRDRDRDRDRTREKDRDREKSRDMDREKSRDREKDREK-------DRH 105
+ +RE+ K RDRDR++D+D+ R +DRDR++ RD DR + RD +KDR++ RH
Sbjct: 23 THTREEGLSKSRDRDREKDKDKERHRDRDRDRGRDRDRGRDRDLDKDRDRDKDRDRHQRH 82
Query: 106 HRDRHRERSRERSERRKDRDDDDHYRSRDYDRRKDYDRDREDRHKRRSQSRSRGRSEHRS 165
HRD+ R R DD D +RSRD +RR+D +RD RH+ RS+SRSRGR +HRS
Sbjct: 83 HRDKREHRDRP--------DDHDRHRSRDSERRRDRERDGHRRHRSRSRSRSRGRDDHRS 134
Query: 166 RSRSRSRSKSKRISGFDMAPPASAMLAAGAGAAAAGQIPGANPAIPGMFPNMFPLVTGQQ 225
RS S KSKR+SGFD+ P A ++L Q+PG+ +IPGMFPNM P GQ
Sbjct: 135 RSHS----KSKRVSGFDLGPTAQSVLPQFPTIPTPSQLPGS--SIPGMFPNMLPFADGQ- 187
Query: 226 FGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVV 285
L VM QAMTQQATRHARRVYVGGLPP+ANEQSVA +F+QVMAAIGGNTAGPGDAV+
Sbjct: 188 INPL-VMQPQAMTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVL 246
Query: 286 NVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNP 345
NVYINH+KKFAFVEMRSVEEASNAMALDGI+FEGAPVKVRRP+DYNPSLAA LGPSQP+
Sbjct: 247 NVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSS 306
Query: 346 NLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN 405
NLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGN
Sbjct: 307 NLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGN 366
Query: 406 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIA 465
SKGYAFCVYQDL+VTDIACAALNGIKMGDKTLTVRRANQG+ QP+PEQE++LL AQQQ+
Sbjct: 367 SKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENILLQAQQQVQ 426
Query: 466 LQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA 513
LQ+L+ Q G++P+KVVCLTQVV+ADELKDDEEYE+I+EDMR E GK+
Sbjct: 427 LQKLVYQVGALPTKVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYG 474
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 546 bits (1406), Expect = e-154, Method: Compositional matrix adjust.
Identities = 277/335 (82%), Positives = 302/335 (90%), Gaps = 4/335 (1%)
Query: 178 ISGFDMAPPASAMLAAGAGAAAAGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAM 237
+SGFDMAPPA A++ Q PG AIPGMFPNM P+ GQ F L + P QAM
Sbjct: 150 VSGFDMAPPAQAVVPQFPAIPTPSQFPGT--AIPGMFPNMLPMGVGQ-FNPLVIQP-QAM 205
Query: 238 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAF 297
TQQATRHARRVYVGGLPPTANEQSVA +F+QVMAAIGGNTAGPGDAV+NVYINH+KKFAF
Sbjct: 206 TQQATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAF 265
Query: 298 VEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPG 357
VEMRSVEEASNAMALDGI+FEGAPVKVRRP+DYNPSLAA LGPSQP+PNLNLAAVGLTPG
Sbjct: 266 VEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPG 325
Query: 358 SAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL 417
SAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL
Sbjct: 326 SAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL 385
Query: 418 SVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVP 477
+VTDIACAALNGIKMGDKTLTVRRANQGA QP+PEQES+LL AQQQ+ LQ+L+ Q G++P
Sbjct: 386 NVTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGALP 445
Query: 478 SKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 512
+KVVCLTQVVSADELKDDEEYE+I+EDMR E GK+
Sbjct: 446 TKVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKY 480
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 259/314 (82%), Positives = 286/314 (91%), Gaps = 4/314 (1%)
Query: 202 QIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQS 261
Q+P PAI GM PNMF L T F L + P QAMTQQATRHARRVYVGGLPPTANE +
Sbjct: 196 QVPVVAPAISGMLPNMFNL-TQTPFTPLVIQP-QAMTQQATRHARRVYVGGLPPTANEHT 253
Query: 262 VATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321
VA +F+QVMAA+GGNTAGPGDAV+NVYINH+KKFAFVEMRSVEEASNAMALDGI+FEGAP
Sbjct: 254 VAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAP 313
Query: 322 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ 381
VKVRRP+DYNPSLAA LGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ
Sbjct: 314 VKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ 373
Query: 382 IRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441
+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL+VTDIACAALNGIKMGDKTLTVRR
Sbjct: 374 VRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRR 433
Query: 442 ANQGANQPKPEQESVLLHAQQQIALQRLMLQP--GSVPSKVVCLTQVVSADELKDDEEYE 499
ANQGA+QP+PEQES+LLH QQQ +Q+LM Q G++P+KVVCLTQVVS DEL+DDEEYE
Sbjct: 434 ANQGASQPRPEQESMLLHVQQQAQMQKLMFQVGGGALPTKVVCLTQVVSPDELRDDEEYE 493
Query: 500 EILEDMRQEGGKFA 513
+I++DMR+EG ++
Sbjct: 494 DIVQDMREEGCRYG 507
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 518 bits (1333), Expect = e-146, Method: Compositional matrix adjust.
Identities = 303/520 (58%), Positives = 359/520 (69%), Gaps = 53/520 (10%)
Query: 49 ERESSRSREKEKEKGRDRDRDRDRDRTREK------------------------------ 78
ER+ + RE+ + G DR+R RDR+ RE+
Sbjct: 43 ERDEDKDRERHRRHGEDRERYRDRESVRERGEGSRDRERHRREHREESRDRERHHREHRE 102
Query: 79 -DRDREKSRDMDREKSRDREK--------DREKDRHHRDRHRERSRERSERRKDRDDDDH 129
RDRE+ RE SRDRE+ R+++RHHRD HRE SR+R +D +
Sbjct: 103 GSRDRERHHREHREGSRDRERHHREHREGSRDRERHHRD-HREGSRDRERHHRDHRERSE 161
Query: 130 YRSRDYDRRKDYDRDREDRHKRRSQSRSRGRSEHRSRSRSRSRSKSKRISGFDMAPP-AS 188
R R DR R G HRSRS RS S+SKR+SGFD P A
Sbjct: 162 RREHRDRSDDRDYRRSCDRDAERRDRDRDGHRRHRSRSPLRSESQSKRMSGFDQRPSEAI 221
Query: 189 AMLAAGAGAAAAGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRV 248
+LA A + ++P ANP GMFPNM P + P+ AMTQQATRHARRV
Sbjct: 222 PILAPDATPSQLPELPAANP---GMFPNMLPNLVNVPALGQPL----AMTQQATRHARRV 274
Query: 249 YVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASN 308
YVGGLPP ANEQ+VA FF+QVMAAIGGNT G AVVNVYINH+KKFAFVEMRSVEEASN
Sbjct: 275 YVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAFVEMRSVEEASN 334
Query: 309 AMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRI 368
AMALDGI+FEGAPVKVRRP+DYNPS AA LGPSQPNPNLNLAAVGLTPG+ GGLEGPDRI
Sbjct: 335 AMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNLNLAAVGLTPGAGGGLEGPDRI 394
Query: 369 FVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN 428
FVGGLPYYFTEAQ+RELLE+FGPLRGFD+VKD+ETGNSKGYAFC+Y+D +VTDIACAALN
Sbjct: 395 FVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLYKDGTVTDIACAALN 454
Query: 429 GIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPG-SVPSKVVCLTQVV 487
GI++GD+TLTVRRANQGA +P+PEQE++LL AQQ+ ++RL+ + G ++ +KVVCLTQVV
Sbjct: 455 GIQLGDRTLTVRRANQGA-EPRPEQENILLQAQQEAQMKRLVYEVGRTLTTKVVCLTQVV 513
Query: 488 SADELKDDEEYEEILEDMRQEGGKFAFCSPTFCYKESGLI 527
SAD+L+DDEEY +ILEDM EG K+ P ES +I
Sbjct: 514 SADDLRDDEEYNDILEDMTLEGHKYV---PHSTIAESFII 550
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 68 RDRDRDRTREKDRDREKSRDMDREKSRDREKDREK 102
RDR R+R +KDR+R + DRE+ RDRE RE+
Sbjct: 38 RDRVRERDEDKDRERHRRHGEDRERYRDRESVRER 72
>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1
SV=4
Length = 475
Score = 226 bits (575), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 154/367 (41%), Positives = 210/367 (57%), Gaps = 28/367 (7%)
Query: 157 SRG-RSEHRSRSRSRSRSKSKRI-SGFDMAPPASAMLAAGAGAA--AAGQIPGANPAIPG 212
+RG + EH RS K K++ +D+ PP + A AAGQIP A +P
Sbjct: 66 TRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIP-ATALLPT 124
Query: 213 MFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAA 272
M P+ A+ PV + Q TR ARR+YVG +P E+++ FF+ M
Sbjct: 125 MTPDGL---------AVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR- 174
Query: 273 IGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNP 332
+GG T PG+ V+ V IN +K FAF+E RSV+E + AMA DGIIF+G +K+RRP DY P
Sbjct: 175 LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP 234
Query: 333 SLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 392
+ PS P + V P SA ++F+GGLP Y + Q++ELL SFGPL
Sbjct: 235 LPGMSENPSVYVPGVVSTVV---PDSA------HKLFIGGLPNYLNDDQVKELLTSFGPL 285
Query: 393 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKP 451
+ F+LVKD TG SKGYAFC Y D++VTD A A LNG+++GDK L V+RA+ GA N
Sbjct: 286 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLV 345
Query: 452 EQESVLLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQE 508
S + + + LM +Q G P++V+CL +V +EL DDEEYEEI+ED+R E
Sbjct: 346 SPPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDE 405
Query: 509 GGKFAFC 515
K+
Sbjct: 406 CSKYGLV 412
>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1
SV=3
Length = 475
Score = 226 bits (575), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 154/367 (41%), Positives = 210/367 (57%), Gaps = 28/367 (7%)
Query: 157 SRG-RSEHRSRSRSRSRSKSKRI-SGFDMAPPASAMLAAGAGAA--AAGQIPGANPAIPG 212
+RG + EH RS K K++ +D+ PP + A AAGQIP A +P
Sbjct: 66 TRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIP-ATALLPT 124
Query: 213 MFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAA 272
M P+ A+ PV + Q TR ARR+YVG +P E+++ FF+ M
Sbjct: 125 MTPDGL---------AVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR- 174
Query: 273 IGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNP 332
+GG T PG+ V+ V IN +K FAF+E RSV+E + AMA DGIIF+G +K+RRP DY P
Sbjct: 175 LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP 234
Query: 333 SLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 392
+ PS P + V P SA ++F+GGLP Y + Q++ELL SFGPL
Sbjct: 235 LPGMSENPSVYVPGVVSTVV---PDSA------HKLFIGGLPNYLNDDQVKELLTSFGPL 285
Query: 393 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKP 451
+ F+LVKD TG SKGYAFC Y D++VTD A A LNG+++GDK L V+RA+ GA N
Sbjct: 286 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLV 345
Query: 452 EQESVLLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQE 508
S + + + LM +Q G P++V+CL +V +EL DDEEYEEI+ED+R E
Sbjct: 346 SLPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDE 405
Query: 509 GGKFAFC 515
K+
Sbjct: 406 CSKYGLV 412
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 216 bits (549), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 170/291 (58%), Gaps = 24/291 (8%)
Query: 230 PVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI 289
P V + TR ARR+YVG +P E+ + FF+Q M +G A G V+ I
Sbjct: 77 PQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAA-GSPVLACQI 135
Query: 290 NHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNL 349
N +K FAF+E RS++E + AMA DGI +G +K+RRP DY P T P +
Sbjct: 136 NLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPMPGIT-----DTPAIKP 190
Query: 350 AAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGY 409
A V S + P +IF+GGLP Y + Q++ELL SFG LR F+LVKD TG SKGY
Sbjct: 191 AVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGY 250
Query: 410 AFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRL 469
AFC Y DLS+TD + A LNG+++GDK L V+RA+ GA + + Q +
Sbjct: 251 AFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTT----------QSV 300
Query: 470 MLQ-PG-------SVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF 512
MLQ PG P++V+CL +V+ DEL+D+EEYE+ILED+++E K+
Sbjct: 301 MLQVPGLSNVVTSGPPTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKY 351
>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans
GN=uaf-1 PE=2 SV=2
Length = 496
Score = 190 bits (482), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 192/388 (49%), Gaps = 70/388 (18%)
Query: 127 DDHYRSRDYDRRKDYDRDREDRHKRRSQSRSRGRSEHRSRSRSRSRSKSKRISGFDMAPP 186
DD RSR R + R + R +GF+ P
Sbjct: 116 DDEARSR------------------------REPEPQKPREPKKYRFWDVPPTGFETTTP 151
Query: 187 ASAMLAAGAGAAAAGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHAR 246
AAGQ+P ++ P + P VT Q +R
Sbjct: 152 MEY-----KNMQAAGQVPRG--SVQSAVPVVGPSVTCQ--------------------SR 184
Query: 247 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEA 306
R+YVG +P NE+++ FF+Q M G A PG+ ++ IN +K FAF+E RS++E
Sbjct: 185 RLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQA-PGNPILLCQINLDKNFAFIEFRSIDET 243
Query: 307 SNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPD 366
+ MA DGI F G +KVRRP DY PSQ ++N P S ++ +
Sbjct: 244 TAGMAFDGINFMGQQLKVRRPRDYQ--------PSQNTFDMN----SRMPVSTIVVDSAN 291
Query: 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 426
+IF+GGLP Y TE Q++ELL SFGPL+ F L D + GNSKGYAF Y D ++TD A A
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ-GNSKGYAFAEYLDPTLTDQAIAG 350
Query: 427 LNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQV 486
LNG+++GDK L V+ A ANQ + + L ++ IA L G ++++CL +
Sbjct: 351 LNGMQLGDKQLVVQLA--CANQQR--HNTNLPNSASAIAGIDLSQGAGRA-TEILCLMNM 405
Query: 487 VSADELKDDEEYEEILEDMRQEGGKFAF 514
V+ DELK D+EYEEILED+R E K+
Sbjct: 406 VTEDELKADDEYEEILEDVRDECSKYGI 433
>sp|P36629|U2AF2_SCHPO Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1
Length = 517
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 153/343 (44%), Gaps = 22/343 (6%)
Query: 174 KSKRISGFDMAPPASAMLAAG-AGAAAAGQIPGANPAIPGMFPNMFPLVTGQQFGALPVM 232
K KR S +D+ PP ++ A A + +PGA P P G++ +
Sbjct: 129 KRKR-SLWDIKPPGYELVTADQAKMSGVFPLPGA-PRAAVTDPEKLLEFARSAEGSI-IA 185
Query: 233 PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGP-GDAVVNVYINH 291
P + A+R ARR+ V G+P E + +F + I P +V +
Sbjct: 186 PPPPLQPGASRQARRLVVTGIPNEFVEDAFVSFIEDLF--ISTTYHKPETKHFSSVNVCK 243
Query: 292 EKKFAFVEMRSVEEASNAMALDGIIFEG-APVKVRRPSDYNPSLAATLGPSQPNPNLNLA 350
E+ FA +E+ + E+A+ L + +K +R +Y + + P +
Sbjct: 244 EENFAILEVATPEDATFLWGLQSESYSNDVFLKFQRIQNY---IVPQITPEVSQKRSDDY 300
Query: 351 AVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYA 410
A L+ D+I++ LP E Q+ ELL+ FG L F L+K+ G+SKG+
Sbjct: 301 A------KNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFC 354
Query: 411 FCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLM 470
FC +++ S ++A + L+G L + A G NQ ++ + + I +
Sbjct: 355 FCEFKNPSDAEVAISGLDGKDTYGNKLHAQFACVGLNQAMIDKSNGM-----AILTELAK 409
Query: 471 LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA 513
S+P++V+ L +++ DE+ D +EYE+I E ++ + +
Sbjct: 410 ASSQSIPTRVLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYG 452
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 92/138 (66%), Gaps = 10/138 (7%)
Query: 46 RDYERESSRSREKEKEKGRDRDRDRDRDRTREKDRDRE----KSRDMDREKSRDREKDRE 101
++ E++ ++++KE EKGR++D+D++ ++ REKDRD+E + +D D+E + REKD++
Sbjct: 772 KELEKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAREKDQDKELEKGREKDQD 831
Query: 102 KDRHH-RDRHRERSRERSERRKDRDDD-DHYRSRDYDRRKDYDRDR---EDRHKRRSQSR 156
K+ +++ R++ RE+ +R K RD D D R +D D+ ++ DRD+ +DR K R + R
Sbjct: 832 KELEKGQEKDRDKVREK-DRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIRERDR 890
Query: 157 SRGRSEHRSRSRSRSRSK 174
+GR + R + + ++R K
Sbjct: 891 DKGREKDRDKEQVKTREK 908
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 91/158 (57%), Gaps = 26/158 (16%)
Query: 46 RDYERESSRSRE--KEKEKGRDRDRDR--------DRDRTREKDRDREKSRDMDREKSRD 95
RD E E +R ++ KE EKGR++D+D+ DRD+ REKDRD+ + +D D+ + +D
Sbjct: 806 RDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKD 865
Query: 96 REKDREKDRHH-RDRHRERSRERSE---RRKDRDDDDHYRSRDYD----RRKDYDRDRED 147
R+K REKDR R++ RE+ RER R KDR D + ++R+ D R KD D++RE
Sbjct: 866 RDKVREKDRDKLREKDREKIRERDRDKGREKDR-DKEQVKTREKDQEKERLKDRDKEREK 924
Query: 148 -------RHKRRSQSRSRGRSEHRSRSRSRSRSKSKRI 178
R + + + R++ +E + RSR S R+
Sbjct: 925 VRDKGRDRDRDQEKKRNKELTEDKQAPEQRSRPNSPRV 962
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 88/158 (55%), Gaps = 28/158 (17%)
Query: 40 KPQHGSRDYE----RESSRSREKEKEKGRDRDRDRDRDRTREKDRDREKSRDMDREKSRD 95
K Q RD E R+ RS++ EK + +D+D++ ++DR + +D++ EK R+ D++K +
Sbjct: 740 KEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDK--E 797
Query: 96 REKDREKDRHHRDRHRERSRERSE-------RRKDRD---------DDDHYRSRDYDRRK 139
EK REKD RD+ E++RE+ + R KD+D D D R +D D+ +
Sbjct: 798 LEKGREKD---RDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVR 854
Query: 140 DYDRDR---EDRHKRRSQSRSRGRSEHRSRSRSRSRSK 174
D DRD+ +DR K R + R + R + R + R R R K
Sbjct: 855 DKDRDKVREKDRDKVREKDRDKLREKDREKIRERDRDK 892
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 28/157 (17%)
Query: 46 RDYERESSRSREKEKEKGRDRDRDRDRDRTREKDRDREKSRDMDREKSRDREKDREKDR- 104
+D E++ + R+KE EKGR ++R +DR + +EK RD+E+ + D+++S+D EK REKD+
Sbjct: 712 KDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRSKDLEKCREKDQD 771
Query: 105 --------HHRDRHRERSRERSE-------RRKDRDDD-DHYRSRDYD------RRKDYD 142
++D+ E+ RE+ + R KDRD + + R +D D R KD D
Sbjct: 772 KELEKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAREKDQDKELEKGREKDQD 831
Query: 143 RDRE-----DRHKRRSQSRSRGRSEHRSRSRSRSRSK 174
++ E DR K R + R + R + R + R + R K
Sbjct: 832 KELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDK 868
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 21/162 (12%)
Query: 27 SPQPRSADDHSDSKPQHGSRDYERESSR--------SREKEKEKGRDRDRDRDRDRTREK 78
S + R +D S+ +H +RD E+E + REKE EKGRD++R +D+++ +EK
Sbjct: 662 SSKGRRSDTSKSSRVEH-NRDKEQEQEKVGDKGLEKGREKELEKGRDKERVKDQEKDQEK 720
Query: 79 DRDREKSRDMDREKSRDREKDREKDRHH-----RDRHRERSRERSERRKDRDDDDHYRSR 133
RD+E + +E+ +DR K++EK R RD+ R + E+ R KD+D +
Sbjct: 721 GRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRSKDLEKC-REKDQD-----KEL 774
Query: 134 DYDRRKDYDRDRED-RHKRRSQSRSRGRSEHRSRSRSRSRSK 174
+ DR K+ D++ E R K + + +GR + R + ++R K
Sbjct: 775 EKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAREK 816
Score = 37.0 bits (84), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 19/132 (14%)
Query: 60 KEKGR-DRDRDRDRDRTREKDRDREKSRDMDREKS------RDREKDREK--DR---HHR 107
K +GR + RD +R REKD D K R D KS RD+E+++EK D+ R
Sbjct: 639 KHEGRSELSRDCKEERHREKDSDSSKGRRSDTSKSSRVEHNRDKEQEQEKVGDKGLEKGR 698
Query: 108 DRHRERSRERSERRKDRDDDDHYRSRDYD----RRKDYDRDR-EDRHKRRSQSRSRGRSE 162
++ E+ R++ ER KD++ D + RD + R K+ +DR +++ K R + + +GR +
Sbjct: 699 EKELEKGRDK-ERVKDQEKDQE-KGRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDK 756
Query: 163 HRSRSRSRSRSK 174
RS+ + R K
Sbjct: 757 KRSKDLEKCREK 768
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 293 KKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLA-A 351
K A+VE V A+ L G G P+ V+ SQ N A A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ--------------ASQAEKNRAAAMA 239
Query: 352 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAF 411
L GSAG P R++VG L + TE +R + E FG + L+ D ETG SKGY F
Sbjct: 240 NNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGF 295
Query: 412 CVYQDLSVTDIACAALNGIKMGDKTLTV 439
+ D A LNG ++ + + V
Sbjct: 296 ITFSDSECAKKALEQLNGFELAGRPMKV 323
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 94/237 (39%), Gaps = 46/237 (19%)
Query: 219 PLVTGQQFG---------ALPVM-PVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQ 268
PL TG ++G PV PV ++ + R AR V+ L + + FFS
Sbjct: 130 PLATGYRYGHSKSPHFREKSPVREPVDNLSPE-ERDARTVFCMQLAARIRPRDLEDFFSA 188
Query: 269 VMAAIGGNTAGPGDAVVNVYI------NHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322
V V +V I K A+VE ++ A+ L G G P+
Sbjct: 189 V------------GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPI 236
Query: 323 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQI 382
V+ LAA A L G+ G P R++VG L + TE +
Sbjct: 237 IVQASQAEKNRLAAM-------------ANNLQKGNGG----PMRLYVGSLHFNITEDML 279
Query: 383 RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 439
R + E FG + L+KD +TG SKGY F + D A LNG ++ + + V
Sbjct: 280 RGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 293 KKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLA-A 351
K A+VE V A+ L G G P+ V+ SQ N A A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ--------------ASQAEKNRAAAMA 239
Query: 352 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAF 411
L GSAG P R++VG L + TE +R + E FG + L+ D ETG SKGY F
Sbjct: 240 NNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGF 295
Query: 412 CVYQDLSVTDIACAALNGIKMGDKTLTV 439
+ D A LNG ++ + + V
Sbjct: 296 ITFSDSECAKKALEQLNGFELAGRPMKV 323
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 293 KKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLA-A 351
K A+VE V A+ L G G P+ V+ SQ N A A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ--------------ASQAEKNRAAAMA 239
Query: 352 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAF 411
L GSAG P R++VG L + TE +R + E FG + L+ D ETG SKGY F
Sbjct: 240 NNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGF 295
Query: 412 CVYQDLSVTDIACAALNGIKMGDKTLTV 439
+ D A LNG ++ + + V
Sbjct: 296 ITFSDSECAKKALEQLNGFELAGRPMKV 323
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1
Length = 629
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 44/58 (75%), Gaps = 3/58 (5%)
Query: 61 EKGRDRDRDRDRDRTREKDRDREKSRDMDREKSRDREKDREKDRH-HRDRHRERSRER 117
+KGR+R+R +DRDR ++K RDREK D REK R+REKDR +++ RD+ R++ +ER
Sbjct: 201 DKGRERERTKDRDRDKDKSRDREK--DKTREKEREREKDRNREKERERDKDRDKKKER 256
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 6/57 (10%)
Query: 69 DRDRDRTREKDRDREKSRDMDREKSRDREKDREKDRHHRDRHRERSRERSERRKDRD 125
D+ R+R R KDRDR+K + DREK + REK+RE++ +DR+RE+ RER KDRD
Sbjct: 201 DKGRERERTKDRDRDKDKSRDREKDKTREKERERE---KDRNREKERERD---KDRD 251
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 43/56 (76%), Gaps = 2/56 (3%)
Query: 46 RDYERESSRSREKEKEKGRDRDRDRDRDRTREKDRDREKSRDMDREKSRDREKDRE 101
R+ ER R R+K+K + R++D+ R+++R REKDR+REK R +R+K RD++K+RE
Sbjct: 204 RERERTKDRDRDKDKSRDREKDKTREKEREREKDRNREKER--ERDKDRDKKKERE 257
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 27/79 (34%)
Query: 67 DRDRDRDRTREKDRDREKSRDMDREKSRDREKDREKDRHHRDRHRERSRERSERRKDRDD 126
D+ R+R+RT+++DRD++KSRD +++K+R++E++REKDR+ RE+ RER
Sbjct: 201 DKGRERERTKDRDRDKDKSRDREKDKTREKEREREKDRN-----REKERER--------- 246
Query: 127 DDHYRSRDYDRRKDYDRDR 145
D DRD+
Sbjct: 247 -------------DKDRDK 252
Score = 36.6 bits (83), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 52 SSRSREKEKEKGRDRDRDRD-RDRTREKDRDREKSRDMDREKSRDREKDREKDRHHRDRH 110
+SRS++KE +GR+ RDR+ R +E RE+ +D D+ K ++ ++D + R +R
Sbjct: 142 TSRSQDKENREGREHHRDREERKGIKESSGSREQ-KDPDQPKDQESKRDDKDRRRDAERS 200
Query: 111 RERSRERSERRKDRD-DDDHYRSRDYDRRKDYDRDRE-DRHKRRSQSRSRGRSEHRSR 166
++ RER ER KDRD D D R R+ D+ ++ +R+RE DR++ + + R + R + + R
Sbjct: 201 -DKGRER-ERTKDRDRDKDKSRDREKDKTREKEREREKDRNREKERERDKDRDKKKER 256
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 30/39 (76%), Gaps = 4/39 (10%)
Query: 45 SRDYERESSRSREKEKEKGR----DRDRDRDRDRTREKD 79
SRD E++ +R +E+E+EK R +R+RD+DRD+ +E++
Sbjct: 219 SRDREKDKTREKEREREKDRNREKERERDKDRDKKKERE 257
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 368 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 427
+FV L Y +E++I+ ES+GP++ LV D+ T KGYAF Y A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 428 NGIKMGDKTLTV 439
+G K+ + + V
Sbjct: 200 DGQKIDGRRVLV 211
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 12/59 (20%)
Query: 51 ESSRSREKEKEKGRDRDRDRDRDRTREKDRDREKSRDMDREKSRDREKDREKDRHHRDR 109
E SR RE E+EK R++ ++R+R R ++ RE+SRD RE D+HHRDR
Sbjct: 257 EPSRPRE-EREKSREKGKERERSRELSHEQPRERSRDRPRE-----------DKHHRDR 303
>sp|Q5XIN3|MIPT3_RAT TRAF3-interacting protein 1 OS=Rattus norvegicus GN=Traf3ip1 PE=2
SV=1
Length = 653
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 29/120 (24%)
Query: 38 DSKPQHGSRDYERESSRSREKEKEKGRDRDRDRDRDRTREKDRDREKSR---DMDREKSR 94
DSKP RE R +EK KE RDR R+ DRDR R+ +R++ ++R D DR
Sbjct: 189 DSKP--------REKERDKEKAKEADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKD 240
Query: 95 D-----------------REKDREKDRHHRDRHRERSRERSERRKDRDDDDHYRSRDYDR 137
+EK+R+KDR RD+ ++R R +S+ + D D +SRD D+
Sbjct: 241 RDRETERDRDRDRRSDGGKEKERQKDR-DRDKGKDRERRKSKNGEHTRDPDREKSRDADK 299
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%), Gaps = 2/47 (4%)
Query: 56 REKEKEKGRDRDRDRDRDRTREKDRDREKSRDMDREKSRDREKDREK 102
+EKE++K DRDRD+ +DR R K ++ E +RD DREKSRD +K +K
Sbjct: 259 KEKERQK--DRDRDKGKDRERRKSKNGEHTRDPDREKSRDADKSEKK 303
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 83/135 (61%), Gaps = 11/135 (8%)
Query: 49 ERESS---RSREKEKEKGRDRDRDRDRDRTREKDRDREKSRDMDREKSRDREKDREKDRH 105
ER SS + +E+ KE + R+++RD+++ +E DRDR R+ DR+++RD E REK R
Sbjct: 173 ERSSSAEHKQKEELKEDSKPREKERDKEKAKEADRDRH--REPDRDRNRDGE--REKARA 228
Query: 106 HRDRHRERSRERSERRKDRDDDDHYRS---RDYDRRKDYDRDR-EDRHKRRSQSRSRGRS 161
+ R+R+ + +R +RD D RS ++ +R+KD DRD+ +DR +R+S++ R
Sbjct: 229 RAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKERQKDRDRDKGKDRERRKSKNGEHTRD 288
Query: 162 EHRSRSRSRSRSKSK 176
R +SR +S+ K
Sbjct: 289 PDREKSRDADKSEKK 303
>sp|Q9AS36|CCL11_ORYSJ Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1
Length = 427
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 84 KSRDMDREKSRDREKDREKDRHHRDRHRERS---RERSERRKDRDDDDHY---RSRDYDR 137
K RD DRE+ RDRE DR++ R H + R +E+S R RD DHY SRD DR
Sbjct: 364 KGRDSDRERERDREADRDRQRRHHSKDRSSGYSDKEKSRHRSSRDRGDHYSSHSSRDKDR 423
Query: 138 RK 139
+
Sbjct: 424 HR 425
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 63/172 (36%), Gaps = 37/172 (21%)
Query: 179 SGFDMAPPASAMLAAGAGAAAAGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMT 238
+G P + + G ++ G IP A + PN+ L G +P P+
Sbjct: 8 AGLLPIPTPNPLTTLGVSLSSLGAIPAA-----ALDPNIATL------GEIPQPPLMGNV 56
Query: 239 --QQATRHARRVYVGGL-PPTANEQSVATFFSQV----MAAIGGNTAGPGDAVVNVYINH 291
+ R VYVG L T + FF QV + G+ P
Sbjct: 57 DPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPT---------- 106
Query: 292 EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR-------RPSDYNPSLAA 336
+FAFVE A+A +G++F P+K+ +P + P AA
Sbjct: 107 --RFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 156
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 368 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQ 415
+FV + Y TE+++R E +GP++ +V ++ +G +GYAF Y+
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYE 152
>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus
GN=Snrnp70 PE=1 SV=2
Length = 448
Score = 40.0 bits (92), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 368 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 427
+FV + Y TE+++R E +GP++ +V + +G +GYAF Y+ A
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 428 NGIKMGDKTLTV 439
+G K+ + + V
Sbjct: 165 DGKKIDGRRVLV 176
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens
GN=SNRNP70 PE=1 SV=2
Length = 437
Score = 39.7 bits (91), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 368 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 427
+FV + Y TE+++R E +GP++ +V + +G +GYAF Y+ A
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 428 NGIKMGDKTLTV 439
+G K+ + + V
Sbjct: 165 DGKKIDGRRVLV 176
>sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70
PE=2 SV=1
Length = 439
Score = 39.3 bits (90), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 368 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 427
+FV + Y TE+++R E +GP++ +V + +G +GYAF Y+ A
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 428 NGIKMGDKTLTV 439
+G K+ + + V
Sbjct: 165 DGKKIDGRRVLV 176
>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster
GN=ncm PE=1 SV=3
Length = 1330
Score = 38.9 bits (89), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 10/178 (5%)
Query: 7 NGEDVDNNNNNNNNNYEYGSSPQPRSADDHS-DSKPQHGSRDYERESSRSREKEKEKGRD 65
NG+ +N+ N E S + R+ + S D + + G+ Y+RE R+RE +K R
Sbjct: 1130 NGQRRRDNSTGRERNRENSSYDRERNRGNSSYDRERKRGNSSYDRE--RNRESSYDKERK 1187
Query: 66 RDRDRDRDRTREKDRDREKSRDMDREKSRDREKDREKDRHHRDRHRERSRERSER--RKD 123
DR R++DR R R RE S REK E R +D R R+ER R +
Sbjct: 1188 NRNAVAHDRQRKRDRSRSYERPTIRENSAPREKRMESSRSEKDSRRGDRSSRNERSDRGE 1247
Query: 124 RDDDDHYRSRDYDRRKDYDR-DREDRHKRRSQSRSRGRSEHRSRSRSRSRSKSKRISG 180
R D R DR + DR +R DR +R + R + RSR++ R R + + + G
Sbjct: 1248 RSD----RGERSDRGERSDRGERSDRGERSDRGERSDREKERSRAKERERDRDRDLKG 1301
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 4/41 (9%)
Query: 68 RDRDRDRTREKDRDREK--SRDMD--REKSRDREKDREKDR 104
R+RD DR RE DR R+K SRD D RE+S +R+++RE DR
Sbjct: 2125 RERDWDRPREWDRHRDKDSSRDWDRNRERSANRDREREADR 2165
Score = 35.8 bits (81), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 49 ERESSRSREKEKEKGRDRDRDRDRDRTREKDRDREKSRDMDRE 91
ER+ R RE ++ + +D RD DR+R R +RDRE+ D +E
Sbjct: 2126 ERDWDRPREWDRHRDKDSSRDWDRNRERSANRDREREADRGKE 2168
>sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3
Length = 843
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 368 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 427
+FVG + ++ IR+LL G + + V+ +G + + FC Y++ T A L
Sbjct: 89 VFVGNISEKASDMLIRQLLAKCGLVLSWKRVQG-ASGKLQAFGFCEYKEPESTLRALRLL 147
Query: 428 NGIKMGDKTLTVR 440
+ +++G+K L V+
Sbjct: 148 HDLQIGEKKLLVK 160
>sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=2
Length = 838
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 368 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 427
+FVG + ++ IR+LL G + + V+ +G + + FC Y++ T A L
Sbjct: 89 VFVGNISEKASDMLIRQLLAKCGLVLSWKRVQG-ASGKLQAFGFCEYKEPESTLRALRLL 147
Query: 428 NGIKMGDKTLTVR 440
+ +++G+K L V+
Sbjct: 148 HDLQIGEKKLLVK 160
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 426
R+++G L Y E I+ +G L G DL GY F ++D D A
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLGIDL--------KNGYGFVEFEDSRDADDAVYE 54
Query: 427 LNGIKMGDKTLTVRRA 442
LNG ++ + + V A
Sbjct: 55 LNGKELCGERVIVEHA 70
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 426
R++VGGLPY E + + +G R L+K+ GY F ++D D A
Sbjct: 5 RVYVGGLPYGVRERDLERFFKGYGRTRDI-LIKN-------GYGFVEFEDYRDADDAVYE 56
Query: 427 LNGIKMGDKTLTV 439
LNG ++ + + V
Sbjct: 57 LNGKELLGERVVV 69
>sp|P41512|TOP1_XENLA DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1
Length = 829
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 11/84 (13%)
Query: 70 RDRDRTREKDRDREKSRDMDREKSRDREKDREKD--RH-----HRDRHRERSRERS-ERR 121
R++D + ++RD EK RD + EK RD EK +EKD +H HR + E+ +E+ E+
Sbjct: 70 REKDGEKHRERDGEKHRDKNGEKHRDGEKHKEKDIEKHKEVEKHRVKDGEKHKEKDVEKH 129
Query: 122 KDRDDDDHYRSRDYDRRKDYDRDR 145
K++D + H RD ++ K D+DR
Sbjct: 130 KEKDVEKH---RDGEKHKHRDKDR 150
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 64 RDRDRDRDRDRTREKDRDREKSRDMDREKSRDREKD 99
RD +R RD DR RE D+ R++S + DRE+ DR K+
Sbjct: 2145 RDWERSRDWDRHREWDKGRDRSSNRDRERDNDRAKE 2180
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 46 RDYERESSRSREKEKEKGRDRDRDRDRDRTREKDRDREK 84
RD+ER R +E +KGRDR +RDR+R D DR K
Sbjct: 2145 RDWERSRDWDRHREWDKGRDRSSNRDRER----DNDRAK 2179
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 368 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 427
+F+G L T ++R E+FG + D+ K YAFC Y D+ A +
Sbjct: 658 LFIGNLEKDITAGELRSHFEAFGEIIEIDIKKQ----GLNAYAFCQYSDIVSVVKAMRKM 713
Query: 428 NGIKMG 433
+G +G
Sbjct: 714 DGEHLG 719
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 66/174 (37%), Gaps = 34/174 (19%)
Query: 178 ISGFDMAP-PASAMLAAGAGAAAAGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQA 236
+ G + P P S+ L A + + GA PA + PN+ L G +P P+
Sbjct: 5 VPGAGLLPIPTSSPLTAVSSLGVSLSSLGAIPAA-ALDPNITAL------GEIPQPPLMG 57
Query: 237 MT--QQATRHARRVYVGGL-PPTANEQSVATFFSQV----MAAIGGNTAGPGDAVVNVYI 289
+ R VYVG L T + FF QV + G+ P
Sbjct: 58 NVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPT-------- 109
Query: 290 NHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR-------RPSDYNPSLAA 336
+FAFVE A+A +G++F P+K+ +P + P AA
Sbjct: 110 ----RFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 159
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 426
R+++G L Y E + + +G + DL GY F + DL D A
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDL--------KNGYGFVEFDDLRDADDAVYE 54
Query: 427 LNGIKMGDKTLTVRRA 442
LNG + + + V A
Sbjct: 55 LNGKDLCGERVIVEHA 70
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 36.6 bits (83), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 66/174 (37%), Gaps = 34/174 (19%)
Query: 178 ISGFDMAP-PASAMLAAGAGAAAAGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQA 236
+ G + P P S+ L A + + GA PA + PN+ L G +P P+
Sbjct: 5 VPGAGLLPIPTSSPLTAVSSLGVSLSSLGAIPAA-ALDPNITTL------GEIPQPPLMG 57
Query: 237 MT--QQATRHARRVYVGGL-PPTANEQSVATFFSQV----MAAIGGNTAGPGDAVVNVYI 289
+ R VYVG L T + FF QV + G+ P
Sbjct: 58 NVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPT-------- 109
Query: 290 NHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR-------RPSDYNPSLAA 336
+FAFVE A+A +G++F P+K+ +P + P AA
Sbjct: 110 ----RFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAA 159
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 36.2 bits (82), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 426
R+++G L Y E + + +G + DL GY F + DL D A
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDL--------KNGYGFVEFDDLRDADDAVYE 54
Query: 427 LNGIKMGDKTLTVRRA 442
LNG + + + V A
Sbjct: 55 LNGKDLCGERVIVEHA 70
>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 OS=Caenorhabditis
elegans GN=rsp-7 PE=3 SV=3
Length = 452
Score = 36.2 bits (82), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 16/110 (14%)
Query: 222 TGQQFG--ALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVA----TFFSQVMAAIGG 275
T +Q G A P +P + + R VYVG LP + V +F +VM A
Sbjct: 137 TLEQLGLPAYPPLPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYA--R 194
Query: 276 NTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR 325
+GP DA+ Y A+VE NA+ DG F+ P+K++
Sbjct: 195 MASGP-DALPCAY-------AYVEFSQQASVCNALQNDGFEFKERPLKIQ 236
>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 368 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR---ETGNSKGYAFCVYQDLSVTDIAC 424
+FV + Y TE+++R E +GP++ +V ++ +G +GYAF Y+ A
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAY 164
Query: 425 AALNGIKMGDKTLTV 439
+G K+ + + V
Sbjct: 165 KHADGKKIDGRRVLV 179
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis
elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 426
+++VGGLP T ++ E+ + FG +R + + G+AF Y D+ + A A
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVAR-----RPPGFAFVEYDDVRDAEDAVRA 58
Query: 427 LNGIKM 432
L+G ++
Sbjct: 59 LDGSRI 64
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 426
R+++G L Y E I+ +G L DL GY F ++D D A
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDL--------KNGYGFVEFEDSRDADDAVYE 54
Query: 427 LNGIKMGDKTLTVRRA 442
LNG ++ + + V A
Sbjct: 55 LNGKELCGERVIVEHA 70
>sp|A2AJT4|PNISR_MOUSE Arginine/serine-rich protein PNISR OS=Mus musculus GN=Pnisr PE=1
SV=1
Length = 805
Score = 32.7 bits (73), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 60 KEKGRDRDRDRDRDRTREKDRDREKSRDMDREKSRDREKDREKDRHHRD 108
K KG +++DR ++R+R D+DR K ++K RDRE D+ K++ R+
Sbjct: 655 KHKGEAKEQDRKKERSRSVDKDRRK-----KDKERDRELDKRKEKQKRE 698
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,945,015
Number of Sequences: 539616
Number of extensions: 9874477
Number of successful extensions: 196908
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2593
Number of HSP's successfully gapped in prelim test: 1747
Number of HSP's that attempted gapping in prelim test: 70979
Number of HSP's gapped (non-prelim): 56110
length of query: 545
length of database: 191,569,459
effective HSP length: 122
effective length of query: 423
effective length of database: 125,736,307
effective search space: 53186457861
effective search space used: 53186457861
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)