Query 009052
Match_columns 545
No_of_seqs 462 out of 4098
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 19:49:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.3E-54 1.4E-58 451.8 38.4 305 237-541 167-484 (509)
2 TIGR01622 SF-CC1 splicing fact 100.0 3.2E-44 6.9E-49 372.8 27.5 279 242-543 86-432 (457)
3 KOG0120 Splicing factor U2AF, 100.0 1.4E-38 3E-43 312.5 18.2 299 231-538 161-471 (500)
4 KOG0147 Transcriptional coacti 100.0 7.8E-38 1.7E-42 302.0 16.2 276 241-537 175-506 (549)
5 TIGR01645 half-pint poly-U bin 100.0 3.7E-36 8E-41 306.9 23.0 179 242-444 104-283 (612)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.8E-36 1.7E-40 299.6 19.6 251 244-539 2-329 (352)
7 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.5E-32 5.4E-37 287.8 29.6 193 244-444 294-501 (509)
8 TIGR01628 PABP-1234 polyadenyl 100.0 7E-33 1.5E-37 294.3 20.7 227 247-539 2-237 (562)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 2.2E-32 4.8E-37 279.3 18.2 223 244-540 57-288 (578)
10 KOG0145 RNA-binding protein EL 100.0 2.3E-32 5E-37 238.8 15.5 252 242-538 38-337 (360)
11 TIGR01628 PABP-1234 polyadenyl 100.0 8.6E-32 1.9E-36 285.9 23.0 246 245-541 88-346 (562)
12 KOG0117 Heterogeneous nuclear 100.0 1.3E-31 2.8E-36 251.7 15.8 223 243-538 81-310 (506)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.1E-31 1.5E-35 271.5 23.0 256 244-541 1-333 (481)
14 TIGR01659 sex-lethal sex-letha 100.0 5.3E-31 1.2E-35 256.8 18.3 171 241-446 103-276 (346)
15 KOG0127 Nucleolar protein fibr 100.0 1.5E-30 3.2E-35 250.0 17.8 193 246-448 6-199 (678)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.8E-29 3.8E-34 261.1 22.0 274 245-543 96-458 (481)
17 KOG0124 Polypyrimidine tract-b 100.0 1.6E-30 3.5E-35 237.6 11.4 180 242-445 110-290 (544)
18 KOG0148 Apoptosis-promoting RN 100.0 9.2E-30 2E-34 224.2 13.7 214 243-541 4-220 (321)
19 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9E-28 2E-32 241.2 20.7 197 244-446 88-350 (352)
20 TIGR01622 SF-CC1 splicing fact 100.0 2.5E-27 5.3E-32 246.3 24.3 189 245-443 186-446 (457)
21 KOG0148 Apoptosis-promoting RN 100.0 5.4E-28 1.2E-32 213.0 14.4 183 245-452 62-245 (321)
22 KOG0123 Polyadenylate-binding 99.9 4E-26 8.8E-31 223.5 16.0 215 246-538 2-225 (369)
23 KOG0123 Polyadenylate-binding 99.9 4.1E-26 8.9E-31 223.5 15.2 241 248-538 79-328 (369)
24 KOG0147 Transcriptional coacti 99.9 1.4E-26 3E-31 224.4 11.5 190 242-442 275-525 (549)
25 KOG0131 Splicing factor 3b, su 99.9 1.7E-26 3.7E-31 192.0 9.9 170 244-447 8-179 (203)
26 KOG0144 RNA-binding protein CU 99.9 6.6E-26 1.4E-30 212.3 14.1 171 243-448 32-209 (510)
27 KOG0127 Nucleolar protein fibr 99.9 2.7E-25 5.8E-30 214.0 18.4 195 244-445 116-378 (678)
28 KOG0145 RNA-binding protein EL 99.9 2E-24 4.2E-29 189.2 17.5 197 243-445 125-358 (360)
29 KOG0117 Heterogeneous nuclear 99.9 1.4E-23 3.1E-28 197.8 15.5 164 242-448 161-334 (506)
30 TIGR01648 hnRNP-R-Q heterogene 99.9 5.4E-23 1.2E-27 210.6 18.5 165 243-446 136-308 (578)
31 TIGR01659 sex-lethal sex-letha 99.9 3.1E-23 6.6E-28 202.4 13.8 141 364-541 106-255 (346)
32 KOG0110 RNA-binding protein (R 99.9 1.2E-22 2.7E-27 202.4 17.0 257 242-538 382-672 (725)
33 KOG0109 RNA-binding protein LA 99.9 4.1E-23 8.8E-28 184.2 9.4 148 246-446 3-151 (346)
34 KOG0120 Splicing factor U2AF, 99.9 1E-20 2.2E-25 186.8 16.1 190 243-444 287-491 (500)
35 TIGR01645 half-pint poly-U bin 99.8 6.5E-21 1.4E-25 195.5 12.8 149 365-539 107-264 (612)
36 KOG0110 RNA-binding protein (R 99.8 9.4E-21 2E-25 189.1 12.4 174 246-446 516-694 (725)
37 KOG4206 Spliceosomal protein s 99.8 4.6E-19 9.9E-24 154.5 15.8 186 244-443 8-220 (221)
38 KOG0146 RNA-binding protein ET 99.8 1.2E-19 2.6E-24 160.0 10.6 81 366-446 286-366 (371)
39 KOG1190 Polypyrimidine tract-b 99.8 1.1E-18 2.4E-23 163.0 17.1 274 244-544 149-475 (492)
40 KOG0144 RNA-binding protein CU 99.8 1.8E-19 4E-24 169.4 10.2 137 366-538 35-182 (510)
41 KOG4205 RNA-binding protein mu 99.8 1.2E-19 2.5E-24 171.3 7.6 174 244-447 5-178 (311)
42 KOG0105 Alternative splicing f 99.8 5.5E-18 1.2E-22 141.4 15.0 178 243-442 4-187 (241)
43 KOG0124 Polypyrimidine tract-b 99.8 1.5E-18 3.2E-23 159.6 9.5 143 366-534 114-265 (544)
44 KOG0131 Splicing factor 3b, su 99.7 1E-17 2.2E-22 140.0 8.6 136 365-536 9-154 (203)
45 PLN03134 glycine-rich RNA-bind 99.7 1.6E-16 3.5E-21 135.5 13.1 84 364-447 33-116 (144)
46 KOG1190 Polypyrimidine tract-b 99.7 6.6E-17 1.4E-21 151.2 10.3 269 242-536 25-350 (492)
47 KOG0109 RNA-binding protein LA 99.7 3.1E-16 6.8E-21 140.5 9.7 124 366-536 3-127 (346)
48 KOG1548 Transcription elongati 99.6 1.8E-15 4E-20 139.0 13.2 170 366-536 135-329 (382)
49 KOG4211 Splicing factor hnRNP- 99.6 1.9E-15 4.2E-20 145.5 13.8 169 245-442 10-179 (510)
50 KOG1548 Transcription elongati 99.6 6E-15 1.3E-19 135.7 14.8 198 243-446 132-353 (382)
51 KOG0106 Alternative splicing f 99.6 6.5E-16 1.4E-20 136.7 8.2 166 246-442 2-168 (216)
52 KOG1457 RNA binding protein (c 99.6 1E-14 2.2E-19 125.9 13.4 179 241-432 30-273 (284)
53 PLN03134 glycine-rich RNA-bind 99.6 1.5E-15 3.3E-20 129.5 8.0 87 239-331 28-115 (144)
54 PF00076 RRM_1: RNA recognitio 99.6 1.9E-14 4.2E-19 107.8 9.0 70 368-438 1-70 (70)
55 KOG4212 RNA-binding protein hn 99.5 1.1E-13 2.4E-18 130.8 14.4 191 243-441 42-290 (608)
56 KOG0122 Translation initiation 99.5 5.5E-14 1.2E-18 123.4 9.6 82 364-445 188-269 (270)
57 KOG4207 Predicted splicing fac 99.5 3.6E-14 7.8E-19 121.0 7.5 86 362-447 10-95 (256)
58 KOG0125 Ataxin 2-binding prote 99.5 1.7E-13 3.7E-18 125.2 10.6 86 359-446 90-175 (376)
59 PF14259 RRM_6: RNA recognitio 99.5 1.5E-13 3.2E-18 102.9 8.1 70 368-438 1-70 (70)
60 KOG4206 Spliceosomal protein s 99.5 2.3E-13 4.9E-18 119.1 10.3 162 366-537 10-199 (221)
61 KOG0113 U1 small nuclear ribon 99.5 2.2E-13 4.9E-18 122.9 10.3 83 363-445 99-181 (335)
62 KOG0121 Nuclear cap-binding pr 99.5 1.6E-13 3.5E-18 107.9 7.7 78 365-442 36-113 (153)
63 KOG1365 RNA-binding protein Fu 99.5 2.2E-13 4.8E-18 126.7 9.7 261 243-544 58-347 (508)
64 KOG0126 Predicted RNA-binding 99.5 1.4E-14 2.9E-19 121.1 1.3 81 366-446 36-116 (219)
65 KOG0107 Alternative splicing f 99.5 2.3E-13 5E-18 113.4 8.6 77 365-446 10-86 (195)
66 KOG0130 RNA-binding protein RB 99.4 1.6E-13 3.5E-18 108.8 6.6 81 366-446 73-153 (170)
67 KOG4205 RNA-binding protein mu 99.4 2.6E-13 5.7E-18 128.5 9.1 144 365-540 6-158 (311)
68 PLN03120 nucleic acid binding 99.4 7.5E-13 1.6E-17 120.6 10.8 76 366-445 5-80 (260)
69 PF00076 RRM_1: RNA recognitio 99.4 1.5E-13 3.2E-18 102.9 4.5 69 248-323 1-70 (70)
70 KOG0114 Predicted RNA-binding 99.4 1.3E-12 2.8E-17 98.8 9.1 77 363-442 16-92 (124)
71 KOG1456 Heterogeneous nuclear 99.4 6.2E-12 1.3E-16 116.8 14.6 163 245-446 31-200 (494)
72 COG0724 RNA-binding proteins ( 99.4 1.7E-12 3.6E-17 126.6 11.6 168 245-424 115-284 (306)
73 PLN03213 repressor of silencin 99.4 2.6E-12 5.7E-17 123.4 12.0 76 366-445 11-88 (759)
74 KOG0121 Nuclear cap-binding pr 99.4 5.3E-13 1.1E-17 105.0 6.0 84 240-331 31-117 (153)
75 PLN03120 nucleic acid binding 99.4 1.4E-12 3E-17 118.9 9.1 79 245-332 4-82 (260)
76 KOG0149 Predicted RNA-binding 99.4 4.7E-13 1E-17 117.3 5.2 80 243-328 10-89 (247)
77 KOG0149 Predicted RNA-binding 99.4 1.2E-12 2.7E-17 114.7 7.2 78 366-444 13-90 (247)
78 KOG0107 Alternative splicing f 99.4 1.4E-12 3E-17 108.8 6.6 75 244-330 9-85 (195)
79 KOG0130 RNA-binding protein RB 99.4 6.9E-13 1.5E-17 105.2 4.5 86 240-331 67-153 (170)
80 smart00362 RRM_2 RNA recogniti 99.3 6E-12 1.3E-16 94.4 9.1 72 367-440 1-72 (72)
81 KOG4212 RNA-binding protein hn 99.3 3.2E-11 7E-16 114.3 15.0 72 366-442 537-608 (608)
82 smart00360 RRM RNA recognition 99.3 6.8E-12 1.5E-16 93.8 8.4 71 370-440 1-71 (71)
83 KOG0111 Cyclophilin-type pepti 99.3 1.1E-12 2.4E-17 112.9 4.4 81 366-446 11-91 (298)
84 PLN03121 nucleic acid binding 99.3 4.2E-12 9.1E-17 113.6 7.7 80 244-332 4-83 (243)
85 KOG1456 Heterogeneous nuclear 99.3 1.5E-10 3.3E-15 107.7 18.0 272 241-539 116-465 (494)
86 PLN03121 nucleic acid binding 99.3 1.4E-11 3.1E-16 110.3 10.7 75 366-444 6-80 (243)
87 KOG0126 Predicted RNA-binding 99.3 1.2E-13 2.5E-18 115.6 -2.5 86 241-332 31-117 (219)
88 KOG1365 RNA-binding protein Fu 99.3 3E-12 6.6E-17 119.2 5.2 190 247-442 163-359 (508)
89 PF13893 RRM_5: RNA recognitio 99.3 1.3E-11 2.8E-16 87.5 7.2 56 382-442 1-56 (56)
90 KOG0108 mRNA cleavage and poly 99.3 8.9E-12 1.9E-16 123.5 8.4 81 366-446 19-99 (435)
91 KOG0122 Translation initiation 99.3 6.4E-12 1.4E-16 110.6 6.5 81 243-329 187-268 (270)
92 KOG0105 Alternative splicing f 99.3 3.8E-11 8.3E-16 100.9 10.6 155 365-534 6-163 (241)
93 KOG0129 Predicted RNA-binding 99.3 3.6E-11 7.8E-16 117.2 12.1 173 241-426 255-432 (520)
94 KOG0132 RNA polymerase II C-te 99.3 3.3E-11 7.1E-16 122.3 11.9 79 241-331 417-496 (894)
95 smart00361 RRM_1 RNA recogniti 99.3 2.5E-11 5.4E-16 90.3 8.0 61 379-439 2-69 (70)
96 cd00590 RRM RRM (RNA recogniti 99.3 4.8E-11 1.1E-15 89.9 9.8 74 367-441 1-74 (74)
97 KOG0125 Ataxin 2-binding prote 99.2 3.3E-11 7.1E-16 110.5 9.8 81 241-331 92-175 (376)
98 KOG0114 Predicted RNA-binding 99.2 2.5E-11 5.3E-16 91.9 7.4 75 244-330 17-95 (124)
99 KOG0113 U1 small nuclear ribon 99.2 1.5E-11 3.3E-16 111.3 7.2 79 242-326 98-177 (335)
100 COG0724 RNA-binding proteins ( 99.2 8.8E-11 1.9E-15 114.4 12.1 80 365-444 115-194 (306)
101 KOG4211 Splicing factor hnRNP- 99.2 5E-11 1.1E-15 115.4 9.7 146 365-540 10-164 (510)
102 PF14259 RRM_6: RNA recognitio 99.2 2.1E-11 4.6E-16 91.1 5.4 64 248-323 1-70 (70)
103 PLN03213 repressor of silencin 99.2 1.9E-11 4.1E-16 117.6 6.3 76 244-329 9-87 (759)
104 KOG0108 mRNA cleavage and poly 99.2 1.5E-11 3.2E-16 122.0 4.5 80 246-331 19-99 (435)
105 KOG4207 Predicted splicing fac 99.2 2.5E-11 5.5E-16 103.9 5.2 80 244-329 12-92 (256)
106 KOG4307 RNA binding protein RB 99.2 6E-10 1.3E-14 111.7 14.5 196 243-447 309-516 (944)
107 KOG0111 Cyclophilin-type pepti 99.1 1.8E-11 3.9E-16 105.6 2.7 83 242-330 7-90 (298)
108 smart00362 RRM_2 RNA recogniti 99.1 3.6E-10 7.7E-15 84.6 8.6 70 247-324 1-71 (72)
109 KOG0106 Alternative splicing f 99.1 1.8E-10 3.9E-15 102.4 7.4 145 367-540 3-152 (216)
110 KOG4454 RNA binding protein (R 99.1 8.4E-12 1.8E-16 107.7 -1.9 141 242-437 6-155 (267)
111 smart00360 RRM RNA recognition 99.1 2.4E-10 5.2E-15 85.2 5.6 69 250-324 1-70 (71)
112 KOG0226 RNA-binding proteins [ 99.1 7.8E-10 1.7E-14 98.1 9.3 166 247-442 98-267 (290)
113 cd00590 RRM RRM (RNA recogniti 99.1 4.3E-10 9.3E-15 84.7 6.8 73 247-326 1-74 (74)
114 KOG0146 RNA-binding protein ET 99.0 1.9E-10 4.1E-15 102.3 4.7 79 242-326 282-361 (371)
115 KOG0112 Large RNA-binding prot 99.0 1.8E-10 4E-15 118.9 4.2 165 241-449 368-535 (975)
116 KOG4210 Nuclear localization s 99.0 3.3E-10 7.1E-15 107.5 5.1 177 244-446 87-265 (285)
117 KOG4208 Nucleolar RNA-binding 99.0 1.3E-09 2.9E-14 94.0 8.3 80 366-445 50-130 (214)
118 KOG0415 Predicted peptidyl pro 99.0 6.3E-10 1.4E-14 102.9 6.6 82 363-444 237-318 (479)
119 KOG0132 RNA polymerase II C-te 99.0 6.2E-09 1.3E-13 106.1 13.8 77 366-448 422-498 (894)
120 KOG0128 RNA-binding protein SA 99.0 5.2E-11 1.1E-15 122.5 -1.2 153 241-445 663-815 (881)
121 KOG1457 RNA binding protein (c 99.0 2.4E-09 5.2E-14 93.0 8.2 83 364-446 33-119 (284)
122 PF13893 RRM_5: RNA recognitio 98.9 3.1E-09 6.7E-14 75.2 5.4 53 262-326 1-55 (56)
123 KOG4660 Protein Mei2, essentia 98.8 9.4E-09 2E-13 101.6 8.1 177 240-444 70-249 (549)
124 smart00361 RRM_1 RNA recogniti 98.8 4.7E-09 1E-13 78.0 4.6 61 259-324 2-69 (70)
125 KOG0153 Predicted RNA-binding 98.8 9.2E-09 2E-13 95.5 7.0 78 240-329 223-302 (377)
126 KOG4661 Hsp27-ERE-TATA-binding 98.8 4.2E-08 9.2E-13 96.4 11.0 82 365-446 405-486 (940)
127 KOG0153 Predicted RNA-binding 98.8 2.8E-08 6E-13 92.4 8.7 73 366-444 229-302 (377)
128 KOG4676 Splicing factor, argin 98.7 1.7E-08 3.6E-13 95.0 5.5 182 247-436 9-217 (479)
129 KOG0415 Predicted peptidyl pro 98.7 1.3E-08 2.8E-13 94.5 4.6 80 243-328 237-317 (479)
130 KOG0533 RRM motif-containing p 98.7 7.5E-08 1.6E-12 87.9 9.4 83 365-448 83-165 (243)
131 KOG4661 Hsp27-ERE-TATA-binding 98.7 4.9E-08 1.1E-12 96.0 7.9 83 242-330 402-485 (940)
132 KOG0128 RNA-binding protein SA 98.7 8.7E-10 1.9E-14 113.6 -4.4 212 244-535 570-791 (881)
133 PF04059 RRM_2: RNA recognitio 98.6 4.1E-07 9E-12 70.8 9.6 78 366-443 2-85 (97)
134 KOG4660 Protein Mei2, essentia 98.6 6.4E-08 1.4E-12 95.8 5.7 68 366-438 76-143 (549)
135 KOG4208 Nucleolar RNA-binding 98.6 6E-08 1.3E-12 83.9 4.0 78 243-326 47-126 (214)
136 KOG4307 RNA binding protein RB 98.5 3.1E-06 6.7E-11 85.7 15.6 76 366-441 868-943 (944)
137 KOG4209 Splicing factor RNPS1, 98.5 2.4E-07 5.2E-12 85.1 5.7 80 365-445 101-180 (231)
138 KOG4454 RNA binding protein (R 98.4 1.2E-07 2.5E-12 82.5 2.3 79 366-446 10-88 (267)
139 KOG0151 Predicted splicing reg 98.4 1.3E-06 2.9E-11 88.6 9.0 83 365-447 174-259 (877)
140 KOG0533 RRM motif-containing p 98.3 3.7E-06 8.1E-11 76.9 10.7 82 242-330 80-162 (243)
141 KOG0116 RasGAP SH3 binding pro 98.3 1.4E-06 3.1E-11 86.3 8.5 77 243-326 286-363 (419)
142 PF04059 RRM_2: RNA recognitio 98.3 2.6E-06 5.7E-11 66.3 7.0 79 246-328 2-85 (97)
143 KOG0151 Predicted splicing reg 98.2 2E-06 4.2E-11 87.4 7.0 80 244-330 173-257 (877)
144 PF11608 Limkain-b1: Limkain b 98.2 4.4E-06 9.4E-11 61.5 6.9 70 367-446 4-78 (90)
145 KOG2193 IGF-II mRNA-binding pr 98.2 9.5E-08 2.1E-12 90.8 -2.6 154 246-445 2-157 (584)
146 KOG0116 RasGAP SH3 binding pro 98.2 2.7E-06 5.9E-11 84.4 7.3 78 366-444 289-366 (419)
147 KOG1996 mRNA splicing factor [ 98.1 8.9E-06 1.9E-10 74.0 6.8 77 367-443 283-365 (378)
148 KOG0226 RNA-binding proteins [ 98.0 5.8E-06 1.3E-10 73.9 4.7 77 244-326 189-266 (290)
149 KOG4209 Splicing factor RNPS1, 98.0 3E-06 6.5E-11 77.9 3.0 85 240-330 96-180 (231)
150 KOG0112 Large RNA-binding prot 98.0 2.5E-06 5.4E-11 89.1 2.7 133 365-537 372-507 (975)
151 KOG1995 Conserved Zn-finger pr 98.0 4.7E-06 1E-10 78.7 4.0 81 366-446 67-155 (351)
152 PF11608 Limkain-b1: Limkain b 97.9 7.8E-05 1.7E-09 55.1 8.2 72 246-328 3-75 (90)
153 PF08777 RRM_3: RNA binding mo 97.9 1.4E-05 3.1E-10 63.9 4.9 71 366-442 2-77 (105)
154 KOG1995 Conserved Zn-finger pr 97.6 4.8E-05 1E-09 72.0 4.3 89 242-330 63-154 (351)
155 KOG2314 Translation initiation 97.6 0.00018 4E-09 71.6 8.3 76 366-442 59-141 (698)
156 COG5175 MOT2 Transcriptional r 97.6 0.00012 2.6E-09 68.1 6.4 80 367-446 116-204 (480)
157 KOG0129 Predicted RNA-binding 97.6 0.0002 4.4E-09 70.9 7.6 156 365-542 259-438 (520)
158 KOG2202 U2 snRNP splicing fact 97.6 4E-05 8.7E-10 69.1 2.5 64 380-444 83-147 (260)
159 KOG1996 mRNA splicing factor [ 97.5 4.4E-05 9.6E-10 69.6 2.3 63 475-542 278-350 (378)
160 KOG4210 Nuclear localization s 97.5 5.4E-05 1.2E-09 72.2 2.8 149 365-539 88-245 (285)
161 KOG0115 RNA-binding protein p5 97.5 0.00025 5.5E-09 63.9 6.4 100 305-441 6-110 (275)
162 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00037 8.1E-09 48.0 4.8 52 366-424 2-53 (53)
163 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00054 1.2E-08 47.2 5.2 52 246-310 2-53 (53)
164 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0011 2.3E-08 52.2 7.4 75 366-442 7-89 (100)
165 KOG4849 mRNA cleavage factor I 97.3 0.00053 1.1E-08 64.2 6.1 78 366-443 81-160 (498)
166 PF08777 RRM_3: RNA binding mo 97.3 0.00055 1.2E-08 54.8 5.5 68 246-325 2-75 (105)
167 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.00089 1.9E-08 52.7 6.1 82 244-326 5-88 (100)
168 KOG3152 TBP-binding protein, a 97.2 0.00028 6E-09 63.6 3.4 71 366-436 75-157 (278)
169 KOG1855 Predicted RNA-binding 97.1 0.0002 4.3E-09 69.1 1.8 72 242-313 228-306 (484)
170 KOG1855 Predicted RNA-binding 97.0 0.00065 1.4E-08 65.7 4.3 67 364-430 230-309 (484)
171 KOG2416 Acinus (induces apopto 96.9 0.0013 2.8E-08 66.2 4.9 76 363-444 442-521 (718)
172 PF08952 DUF1866: Domain of un 96.8 0.0049 1.1E-07 51.5 7.1 59 380-447 51-109 (146)
173 COG5175 MOT2 Transcriptional r 96.7 0.0017 3.6E-08 60.7 4.3 76 245-328 114-201 (480)
174 KOG2591 c-Mpl binding protein, 96.7 0.016 3.4E-07 58.2 10.9 70 366-442 176-249 (684)
175 KOG2193 IGF-II mRNA-binding pr 96.5 0.0042 9E-08 60.0 5.0 100 367-472 3-103 (584)
176 KOG3152 TBP-binding protein, a 96.4 0.0019 4.1E-08 58.4 2.2 78 244-321 73-157 (278)
177 KOG2135 Proteins containing th 96.3 0.019 4.2E-07 56.6 8.6 72 368-446 375-447 (526)
178 PF08675 RNA_bind: RNA binding 96.2 0.021 4.5E-07 42.5 6.4 53 367-428 11-63 (87)
179 KOG2253 U1 snRNP complex, subu 96.1 0.00083 1.8E-08 68.7 -1.8 69 243-326 38-107 (668)
180 PF10309 DUF2414: Protein of u 96.0 0.042 9.2E-07 38.8 7.0 54 366-427 6-62 (62)
181 KOG2416 Acinus (induces apopto 96.0 0.0046 1E-07 62.4 2.7 76 242-328 441-520 (718)
182 KOG4849 mRNA cleavage factor I 95.9 0.012 2.7E-07 55.3 5.1 75 244-324 79-156 (498)
183 KOG2202 U2 snRNP splicing fact 95.7 0.008 1.7E-07 54.6 2.9 64 259-329 82-147 (260)
184 KOG0670 U4/U6-associated splic 95.6 0.032 7E-07 56.3 6.8 15 382-396 520-534 (752)
185 KOG2068 MOT2 transcription fac 95.2 0.0067 1.5E-07 57.4 0.8 80 367-446 79-164 (327)
186 KOG4285 Mitotic phosphoprotein 95.1 0.16 3.5E-06 47.3 9.4 74 244-330 196-270 (350)
187 KOG2314 Translation initiation 95.0 0.03 6.5E-07 56.4 4.4 76 243-325 56-139 (698)
188 PF08952 DUF1866: Domain of un 94.7 0.058 1.2E-06 45.2 4.8 70 244-327 26-104 (146)
189 PF04847 Calcipressin: Calcipr 94.6 0.11 2.3E-06 46.2 6.7 62 378-445 8-71 (184)
190 PF07576 BRAP2: BRCA1-associat 94.4 0.44 9.5E-06 38.4 9.2 66 367-434 15-81 (110)
191 KOG4285 Mitotic phosphoprotein 94.3 0.33 7.2E-06 45.3 9.2 73 366-446 198-271 (350)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 94.2 0.041 9E-07 48.7 3.2 79 366-444 8-97 (176)
193 KOG4574 RNA-binding protein (c 94.2 0.048 1E-06 57.7 4.0 75 367-447 300-376 (1007)
194 KOG2135 Proteins containing th 94.1 0.42 9.1E-06 47.5 9.9 75 243-329 370-445 (526)
195 PF15023 DUF4523: Protein of u 94.1 0.19 4.1E-06 41.5 6.4 69 366-442 87-159 (166)
196 KOG3263 Nucleic acid binding p 93.7 0.019 4.1E-07 48.4 0.1 12 259-270 140-151 (196)
197 PF10309 DUF2414: Protein of u 93.6 0.41 8.8E-06 33.9 6.6 54 246-310 6-59 (62)
198 PF11767 SET_assoc: Histone ly 93.2 0.44 9.4E-06 34.3 6.3 55 376-439 11-65 (66)
199 KOG4246 Predicted DNA-binding 92.2 0.079 1.7E-06 55.9 2.0 11 520-530 968-978 (1194)
200 KOG0804 Cytoplasmic Zn-finger 92.1 0.71 1.5E-05 45.8 8.1 68 365-434 74-142 (493)
201 KOG2253 U1 snRNP complex, subu 91.9 0.27 5.8E-06 51.1 5.3 70 363-441 38-107 (668)
202 KOG0670 U4/U6-associated splic 91.3 0.32 7E-06 49.4 5.1 8 294-301 420-427 (752)
203 KOG2891 Surface glycoprotein [ 90.5 0.12 2.7E-06 47.2 1.3 82 363-444 147-267 (445)
204 PF03467 Smg4_UPF3: Smg-4/UPF3 90.3 0.12 2.6E-06 45.8 1.0 69 243-320 5-83 (176)
205 KOG0115 RNA-binding protein p5 90.3 0.29 6.3E-06 44.7 3.4 73 246-325 32-109 (275)
206 PF03880 DbpA: DbpA RNA bindin 90.0 1.7 3.6E-05 32.3 6.8 59 375-442 11-74 (74)
207 KOG2548 SWAP mRNA splicing reg 89.9 0.51 1.1E-05 47.5 5.0 19 251-269 555-573 (653)
208 PF15023 DUF4523: Protein of u 88.9 1.6 3.4E-05 36.3 6.3 71 242-326 83-158 (166)
209 PF07292 NID: Nmi/IFP 35 domai 88.8 0.28 6.2E-06 37.5 1.9 71 296-386 1-73 (88)
210 PF08675 RNA_bind: RNA binding 87.7 0.45 9.7E-06 35.6 2.3 52 248-313 11-63 (87)
211 KOG2591 c-Mpl binding protein, 87.1 0.63 1.4E-05 47.3 3.6 71 243-324 173-246 (684)
212 PF06495 Transformer: Fruit fl 86.9 1.8 3.9E-05 37.1 5.6 10 180-189 118-127 (182)
213 PF04847 Calcipressin: Calcipr 85.2 1.7 3.7E-05 38.7 5.1 59 258-328 8-69 (184)
214 PF10567 Nab6_mRNP_bdg: RNA-re 84.8 5.1 0.00011 37.7 8.0 79 366-444 16-107 (309)
215 KOG2318 Uncharacterized conser 83.0 4.2 9.1E-05 41.9 7.2 84 363-446 172-309 (650)
216 KOG4574 RNA-binding protein (c 82.5 1.6 3.4E-05 46.9 4.2 71 247-329 300-373 (1007)
217 PF07576 BRAP2: BRCA1-associat 81.8 5.7 0.00012 32.0 6.3 65 247-319 15-81 (110)
218 KOG0804 Cytoplasmic Zn-finger 80.3 4.5 9.7E-05 40.4 6.2 67 245-319 74-142 (493)
219 PF11767 SET_assoc: Histone ly 78.1 6.2 0.00013 28.4 4.9 54 256-324 11-65 (66)
220 KOG4019 Calcineurin-mediated s 75.2 4 8.6E-05 35.5 3.8 76 366-447 11-92 (193)
221 KOG1882 Transcriptional regula 74.8 2.5 5.4E-05 38.4 2.6 22 283-304 203-227 (293)
222 PF03880 DbpA: DbpA RNA bindin 73.5 6.1 0.00013 29.2 4.1 62 255-326 11-73 (74)
223 KOG2068 MOT2 transcription fac 72.6 1.4 3.1E-05 42.2 0.6 76 245-328 77-161 (327)
224 KOG2318 Uncharacterized conser 72.5 18 0.00039 37.5 8.2 76 241-324 170-300 (650)
225 KOG4410 5-formyltetrahydrofola 70.6 18 0.00039 33.8 7.1 47 246-303 331-377 (396)
226 PF10567 Nab6_mRNP_bdg: RNA-re 67.4 41 0.0009 31.9 8.8 179 243-428 13-212 (309)
227 KOG4483 Uncharacterized conser 66.5 21 0.00047 35.1 7.0 57 363-426 389-446 (528)
228 PF14111 DUF4283: Domain of un 65.7 4.2 9.2E-05 34.9 2.1 110 256-399 28-139 (153)
229 KOG4410 5-formyltetrahydrofola 65.2 58 0.0013 30.6 9.1 47 366-418 331-378 (396)
230 PF15519 RBM39linker: linker b 61.4 4.9 0.00011 29.7 1.4 22 475-496 51-72 (73)
231 KOG4483 Uncharacterized conser 56.0 37 0.0008 33.5 6.5 57 244-312 390-446 (528)
232 PF15513 DUF4651: Domain of un 52.5 28 0.00061 24.6 3.8 20 499-518 5-24 (62)
233 KOG4365 Uncharacterized conser 51.9 2.5 5.5E-05 41.8 -1.9 77 366-443 4-80 (572)
234 PF03468 XS: XS domain; Inter 51.0 22 0.00049 29.0 3.7 49 367-418 10-67 (116)
235 KOG2812 Uncharacterized conser 50.7 36 0.00079 33.0 5.5 15 410-424 364-378 (426)
236 KOG2295 C2H2 Zn-finger protein 47.3 3.1 6.7E-05 42.5 -2.1 74 365-438 231-304 (648)
237 KOG3861 Sensory cilia assembly 46.1 14 0.00031 35.1 2.1 26 250-275 368-393 (438)
238 PF07530 PRE_C2HC: Associated 44.8 56 0.0012 23.7 4.6 62 380-444 2-64 (68)
239 KOG1295 Nonsense-mediated deca 43.1 25 0.00054 34.7 3.3 67 366-432 8-77 (376)
240 smart00596 PRE_C2HC PRE_C2HC d 41.7 51 0.0011 23.9 3.9 61 380-443 2-63 (69)
241 PF03439 Spt5-NGN: Early trans 41.3 39 0.00084 25.7 3.6 35 391-430 33-67 (84)
242 KOG1295 Nonsense-mediated deca 40.4 23 0.0005 34.9 2.6 64 244-318 6-78 (376)
243 KOG3430 Dynein light chain typ 40.1 51 0.0011 25.2 3.8 41 498-543 36-79 (90)
244 COG5193 LHP1 La protein, small 40.0 6.6 0.00014 38.6 -1.0 59 367-425 176-244 (438)
245 COG5470 Uncharacterized conser 39.1 47 0.001 25.7 3.5 44 492-535 12-67 (96)
246 PRK14548 50S ribosomal protein 38.9 1.5E+02 0.0032 22.6 6.3 56 369-427 24-81 (84)
247 KOG4019 Calcineurin-mediated s 35.6 2.6E+02 0.0056 24.8 7.8 74 246-331 11-91 (193)
248 TIGR03636 L23_arch archaeal ri 34.3 2E+02 0.0043 21.5 6.3 56 368-426 16-73 (77)
249 KOG4008 rRNA processing protei 31.7 71 0.0015 29.3 4.1 32 242-273 37-68 (261)
250 PF03468 XS: XS domain; Inter 31.6 53 0.0011 26.8 3.1 55 247-311 10-75 (116)
251 KOG1882 Transcriptional regula 31.1 62 0.0014 29.7 3.6 9 316-324 196-204 (293)
252 KOG4213 RNA-binding protein La 30.4 45 0.00097 29.2 2.5 33 502-536 123-165 (205)
253 PF14893 PNMA: PNMA 29.8 47 0.001 32.6 3.0 26 244-269 17-42 (331)
254 PF11823 DUF3343: Protein of u 28.0 79 0.0017 23.1 3.3 28 408-435 2-29 (73)
255 PF00403 HMA: Heavy-metal-asso 28.0 2.1E+02 0.0045 19.7 5.6 54 367-426 1-58 (62)
256 PF14026 DUF4242: Protein of u 26.2 2.8E+02 0.006 20.6 8.0 67 248-317 3-71 (77)
257 KOG2217 U4/U6.U5 snRNP associa 25.8 27 0.00058 37.0 0.5 26 409-434 448-473 (705)
258 COG5638 Uncharacterized conser 25.5 2.2E+02 0.0049 28.4 6.5 38 408-445 259-298 (622)
259 PF07292 NID: Nmi/IFP 35 domai 23.9 38 0.00081 26.1 0.9 26 242-267 49-74 (88)
260 KOG2295 C2H2 Zn-finger protein 22.0 7.7 0.00017 39.8 -4.0 70 243-318 229-299 (648)
261 PF02714 DUF221: Domain of unk 21.2 1E+02 0.0022 30.2 3.7 35 410-446 1-35 (325)
262 KOG4008 rRNA processing protei 21.1 84 0.0018 28.8 2.6 32 366-397 41-72 (261)
263 PF14111 DUF4283: Domain of un 20.2 72 0.0016 27.1 2.1 61 376-442 28-89 (153)
No 1
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=6.3e-54 Score=451.79 Aligned_cols=305 Identities=47% Similarity=0.662 Sum_probs=237.9
Q ss_pred hhhhhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCce
Q 009052 237 MTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGII 316 (545)
Q Consensus 237 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~ 316 (545)
+..+.....++|||+|||+.+|+++|++||..|+.........++..|..+.++.++|||||+|.++++|..||+|+|+.
T Consensus 167 ~~~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~ 246 (509)
T TIGR01642 167 YQQQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSII 246 (509)
T ss_pred cCccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeE
Confidence 45567788899999999999999999999999988776655555678899999999999999999999999999999999
Q ss_pred ecCceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEE
Q 009052 317 FEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFD 396 (545)
Q Consensus 317 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~ 396 (545)
|.|++|+|.++..+.+............+.....................+|||+|||..+++++|+++|+.||.|..+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 99999999988877643322221111111111111111112222334567899999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCChhhHH-HHHHHHHHHHHHHhhcCCCC
Q 009052 397 LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQES-VLLHAQQQIALQRLMLQPGS 475 (545)
Q Consensus 397 i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 475 (545)
|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++............. ..........+.........
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGG 406 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccC
Confidence 99998899999999999999999999999999999999999999996554332222111 00000011111111223356
Q ss_pred CCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee------------cCCceEEEEeCCCCCcCcccccc
Q 009052 476 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------------FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 476 ~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v------------~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
.++.||+|.|+++.++|.++++|++|.++|+++|++||.|+.| .+.|+|||+|.++++|.+|+.-+
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~l 484 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGM 484 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHc
Confidence 7899999999999999999999999999999999999999999 23689999999999998776544
No 2
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.2e-44 Score=372.75 Aligned_cols=279 Identities=23% Similarity=0.344 Sum_probs=215.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
....++|||+|||+.+++++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+||.|+|..|.|++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~------i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~ 159 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQ------CIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRP 159 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCee
Confidence 45678999999999999999999999999877665 455555678899999999999999999999999999999
Q ss_pred eEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecC
Q 009052 322 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR 401 (545)
Q Consensus 322 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~ 401 (545)
|.|.++............ ..........+|||+|||..+++++|+++|+.||.|..|.|+.++
T Consensus 160 i~v~~~~~~~~~~~~~~~-----------------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~ 222 (457)
T TIGR01622 160 IIVQSSQAEKNRAAKAAT-----------------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP 222 (457)
T ss_pred eEEeecchhhhhhhhccc-----------------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 999875432211100000 000001125689999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCCh-------------------hhHHHHHHHH-
Q 009052 402 ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKP-------------------EQESVLLHAQ- 461 (545)
Q Consensus 402 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~-------------------~~~~~~~~~~- 461 (545)
.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+......... .....+....
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLD 302 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhc
Confidence 88999999999999999999999999999999999999997533211000 0000000000
Q ss_pred ---------------HHHHHHHh----------------------------hcCCCCCCceeEEecCCCCcccCCChHHH
Q 009052 462 ---------------QQIALQRL----------------------------MLQPGSVPSKVVCLTQVVSADELKDDEEY 498 (545)
Q Consensus 462 ---------------~~~~~~~~----------------------------~~~~~~~~~~~~~l~n~~~~~~l~~~~~~ 498 (545)
....+..+ .......++.||+|.||+++.++.+..+|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~ 382 (457)
T TIGR01622 303 RDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFD 382 (457)
T ss_pred cCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHH
Confidence 00000000 00002367899999999999999999999
Q ss_pred HHHHHHHHHHHhccCCceee-----cCCceEEEEeCCCCCcCcccccccc
Q 009052 499 EEILEDMRQEGGKFAFCSPT-----FCYKESGLIYTDRRLHNPQFVYFYI 543 (545)
Q Consensus 499 ~~~~~~l~~~f~~fG~V~~v-----~~~g~afV~F~~~e~A~a~~~~~~~ 543 (545)
.+++++|+++|++||.|+.| ...|+|||+|.++++|.+|+..+.+
T Consensus 383 ~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnG 432 (457)
T TIGR01622 383 NEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNG 432 (457)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcC
Confidence 99999999999999999998 5689999999999999877665543
No 3
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-38 Score=312.51 Aligned_cols=299 Identities=51% Similarity=0.801 Sum_probs=256.8
Q ss_pred CChhhhhhhhhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH
Q 009052 231 VMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM 310 (545)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~ 310 (545)
+.+.+.+..+.......++|+++|+.++++.+..+|..--.+.++.....+..++.+.++..++||||+|.+.+.|..|+
T Consensus 161 ~~~~~~~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~ 240 (500)
T KOG0120|consen 161 QLPTPPMDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAM 240 (500)
T ss_pred cCCCCccCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhh
Confidence 33445566677788899999999999999999999999877777776666788999999999999999999999999999
Q ss_pred HcCCceecCceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC
Q 009052 311 ALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFG 390 (545)
Q Consensus 311 ~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 390 (545)
.+++..+.|.++++..+.++.+.++......+ +...............+..++|++||..++++++.++...||
T Consensus 241 ~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg 314 (500)
T KOG0120|consen 241 ALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQ------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFG 314 (500)
T ss_pred cccchhhCCCCceecccccccCCccchhhhcc------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcc
Confidence 99999999999999999988876655544433 222334444556667778999999999999999999999999
Q ss_pred CccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 009052 391 PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLM 470 (545)
Q Consensus 391 ~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (545)
.+....++.+..+|.++||||.+|.+......|+..|||..++++.|.|+.+............ ..+.+.+.++...
T Consensus 315 ~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~---~~~~~~~~i~~~~ 391 (500)
T KOG0120|consen 315 PLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN---ISQSQVPGIPLLM 391 (500)
T ss_pred cchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC---ccccccccchhhh
Confidence 9999999999889999999999999999999999999999999999999999777665554443 1112445566666
Q ss_pred cCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee------------cCCceEEEEeCCCCCcCccc
Q 009052 471 LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------------FCYKESGLIYTDRRLHNPQF 538 (545)
Q Consensus 471 ~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v------------~~~g~afV~F~~~e~A~a~~ 538 (545)
.+....++.|++|.|+|++++|+++++|++|+|+|+.+|.+||.|..| .+.|++||+|.+++++..|.
T Consensus 392 ~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~ 471 (500)
T KOG0120|consen 392 TQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAM 471 (500)
T ss_pred cccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHH
Confidence 677889999999999999999999999999999999999999999999 78999999999999995543
No 4
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=100.00 E-value=7.8e-38 Score=302.04 Aligned_cols=276 Identities=22% Similarity=0.305 Sum_probs=213.2
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCc
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 320 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~ 320 (545)
.++..++||+-.|+..+++-+|.+||+.+|.|..+. .|.+.....++|.|||+|.+.+....|+.|.|+.+.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVr------iI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~ 248 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVR------IIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGV 248 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeE------eeccccchhhcceeEEEEecccchhhHhhhcCCcccCc
Confidence 456678899999999999999999999999987766 56666778899999999999999999999999999999
Q ss_pred eeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeec
Q 009052 321 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 400 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 400 (545)
+|.|+......... +..++ .+ .......+...|||+||-.++++++|+.+|++||.|..|.+..+
T Consensus 249 pv~vq~sEaeknr~-a~~s~------------a~--~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d 313 (549)
T KOG0147|consen 249 PVIVQLSEAEKNRA-ANASP------------AL--QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKD 313 (549)
T ss_pred eeEecccHHHHHHH-Hhccc------------cc--cccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccc
Confidence 99998643222110 00000 00 00011112223999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCCh-------h-------------hHHHHHHH
Q 009052 401 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKP-------E-------------QESVLLHA 460 (545)
Q Consensus 401 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~-------~-------------~~~~~~~~ 460 (545)
..+|.++|||||+|.+.++|.+|++.|||+.|.|+.|+|.........+.. + ..+.+...
T Consensus 314 ~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kl 393 (549)
T KOG0147|consen 314 SETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKL 393 (549)
T ss_pred cccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHH
Confidence 889999999999999999999999999999999999999887555433311 0 00000000
Q ss_pred HH----------HHHHHHhh---------------cCCCC-------CCceeEEecCCCCcccCCChHHHHHHHHHHHHH
Q 009052 461 QQ----------QIALQRLM---------------LQPGS-------VPSKVVCLTQVVSADELKDDEEYEEILEDMRQE 508 (545)
Q Consensus 461 ~~----------~~~~~~~~---------------~~~~~-------~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~ 508 (545)
.+ ...+..+. ..... +++.|+.|.|||++.+.++..|-.+|.++|+++
T Consensus 394 a~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Ee 473 (549)
T KOG0147|consen 394 AEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEE 473 (549)
T ss_pred hccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHH
Confidence 00 00000000 00112 789999999999999999999999999999999
Q ss_pred HhccCCceee----cCCceEEEEeCCCCCcCcc
Q 009052 509 GGKFAFCSPT----FCYKESGLIYTDRRLHNPQ 537 (545)
Q Consensus 509 f~~fG~V~~v----~~~g~afV~F~~~e~A~a~ 537 (545)
|++||+|.+| ...|++||.|.+++.|.+|
T Consensus 474 c~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a 506 (549)
T KOG0147|consen 474 CGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTA 506 (549)
T ss_pred HHhcCCeeEEEEccCCCceEEEecCcHHHHHHH
Confidence 9999999999 5559999999999999543
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3.7e-36 Score=306.95 Aligned_cols=179 Identities=25% Similarity=0.374 Sum_probs=151.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
....++|||+|||+.+++++|+++|..||.|..+. ++.+..+++++|||||+|.+.++|..|+ .|||..|.|+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~------I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR 177 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSIN------MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR 177 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEE------EeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecc
Confidence 35678999999999999999999999999987765 4555567889999999999999999999 8999999999
Q ss_pred eeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeec
Q 009052 321 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 400 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 400 (545)
.|+|.++......... .. ..........+|||+|||..+++++|+++|+.||.|+.|.|.++
T Consensus 178 ~IkV~rp~~~p~a~~~----------~~--------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D 239 (612)
T TIGR01645 178 NIKVGRPSNMPQAQPI----------ID--------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA 239 (612)
T ss_pred eeeecccccccccccc----------cc--------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEec
Confidence 9999875433211000 00 00011122358999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 401 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 401 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
+.+|.++|||||+|.+.++|.+||..|||..|+|+.|+|.++..
T Consensus 240 ~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 240 PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred CCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 88999999999999999999999999999999999999998764
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7.8e-36 Score=299.64 Aligned_cols=251 Identities=21% Similarity=0.273 Sum_probs=190.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
+..+|||+|||+.+|+++|+++|+.||+|..++ ++.+..++.++|||||+|.+.++|.+|| .|||..|.|+.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~------i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i 75 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCK------LVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTI 75 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEE------EEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeE
Confidence 357899999999999999999999999987765 4455567889999999999999999999 899999999999
Q ss_pred EEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCC
Q 009052 323 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE 402 (545)
Q Consensus 323 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~ 402 (545)
.|.++..... .....+|||+|||..+++++|.++|+.||.|..+.++.+..
T Consensus 76 ~v~~a~~~~~-----------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 126 (352)
T TIGR01661 76 KVSYARPSSD-----------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV 126 (352)
T ss_pred EEEeeccccc-----------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC
Confidence 9988643211 01124799999999999999999999999999999999877
Q ss_pred CCCcceEEEEEecChHHHHHHHHHhCCCccCC--eEEEEEEcCCCCCCCChhhHH-------------------------
Q 009052 403 TGNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRANQGANQPKPEQES------------------------- 455 (545)
Q Consensus 403 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~~~~~~~~~------------------------- 455 (545)
++.++|||||+|.+.++|..||+.|||..+.| ..|.|.|+.............
T Consensus 127 ~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (352)
T TIGR01661 127 TGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIG 206 (352)
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCC
Confidence 88999999999999999999999999999977 678899886443110000000
Q ss_pred ------------------HHHHHHHHHH-HH----Hhhc-----------------CCCCCCceeEEecCCCCcccCCCh
Q 009052 456 ------------------VLLHAQQQIA-LQ----RLML-----------------QPGSVPSKVVCLTQVVSADELKDD 495 (545)
Q Consensus 456 ------------------~~~~~~~~~~-~~----~~~~-----------------~~~~~~~~~~~l~n~~~~~~l~~~ 495 (545)
.......+.. .+ .... ........+|+|.|+ +.+..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL--~~~~~e- 283 (352)
T TIGR01661 207 PMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNL--SPDTDE- 283 (352)
T ss_pred CccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCC--CCCCCH-
Confidence 0000000000 00 0000 000122336889888 333333
Q ss_pred HHHHHHHHHHHHHHhccCCceee---------cCCceEEEEeCCCCCcCcccc
Q 009052 496 EEYEEILEDMRQEGGKFAFCSPT---------FCYKESGLIYTDRRLHNPQFV 539 (545)
Q Consensus 496 ~~~~~~~~~l~~~f~~fG~V~~v---------~~~g~afV~F~~~e~A~a~~~ 539 (545)
++|+++|++||.|+.+ .++|+|||+|.+.++|.+|+.
T Consensus 284 -------~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~ 329 (352)
T TIGR01661 284 -------TVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAIL 329 (352)
T ss_pred -------HHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHH
Confidence 3899999999999999 468999999999999976654
No 7
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.5e-32 Score=287.80 Aligned_cols=193 Identities=18% Similarity=0.241 Sum_probs=144.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
..++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|..|| .|||+.|.|+.|
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~------~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l 367 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN------LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKL 367 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 457999999999999999999999999987665 4555567889999999999999999999 899999999999
Q ss_pred EEeCCCCCCCCccccCCCCCCCCCcccccccCCC-CCCCCCCCCCeEEEcCCCCCC----------CHHHHHHHHHhcCC
Q 009052 323 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTP-GSAGGLEGPDRIFVGGLPYYF----------TEAQIRELLESFGP 391 (545)
Q Consensus 323 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~nlp~~~----------~~~~l~~~f~~~G~ 391 (545)
.|.++................ + .......... .......+..+|+|.||.... ..++|+++|++||.
T Consensus 368 ~v~~a~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~ 445 (509)
T TIGR01642 368 HVQRACVGANQATIDTSNGMA-P-VTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGP 445 (509)
T ss_pred EEEECccCCCCCCcccccccc-c-cccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCC
Confidence 999876433211111000000 0 0000000000 001112345689999996421 23689999999999
Q ss_pred ccEEEEeecC---CCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 392 LRGFDLVKDR---ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 392 i~~v~i~~~~---~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
|+.|.|+++. .++...|+|||+|.+.++|.+||..|||..|+|+.|.|.|...
T Consensus 446 v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 446 LINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred eeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 9999998752 2456679999999999999999999999999999999999843
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7e-33 Score=294.29 Aligned_cols=227 Identities=16% Similarity=0.264 Sum_probs=185.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEEe
Q 009052 247 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVR 325 (545)
Q Consensus 247 ~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v~ 325 (545)
+|||+|||+++||++|+++|+.||.|..+. ++.+..+++++|||||+|.+.++|.+|+ .+++..|.|++|+|.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~------v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVR------VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee
Confidence 699999999999999999999999887664 3444556889999999999999999999 899999999999998
Q ss_pred CCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCC
Q 009052 326 RPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN 405 (545)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~ 405 (545)
|+...... ......+|||+|||.++++++|+++|+.||.|..|.|+.+ .+|.
T Consensus 76 ~s~~~~~~---------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~ 127 (562)
T TIGR01628 76 WSQRDPSL---------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGK 127 (562)
T ss_pred cccccccc---------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCC
Confidence 85421100 0111247999999999999999999999999999999988 4788
Q ss_pred cceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecC
Q 009052 406 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQ 485 (545)
Q Consensus 406 ~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n 485 (545)
++|||||+|.+.++|.+|++.|||..+.|+.|.|.......... .........|+|.|
T Consensus 128 skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~----------------------~~~~~~~~~l~V~n 185 (562)
T TIGR01628 128 SRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE----------------------AAPLKKFTNLYVKN 185 (562)
T ss_pred cccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc----------------------cccccCCCeEEEeC
Confidence 99999999999999999999999999999999998764332211 00122334577777
Q ss_pred CCCcccCCChHHHHHHHHHHHHHHhccCCceee--------cCCceEEEEeCCCCCcCcccc
Q 009052 486 VVSADELKDDEEYEEILEDMRQEGGKFAFCSPT--------FCYKESGLIYTDRRLHNPQFV 539 (545)
Q Consensus 486 ~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v--------~~~g~afV~F~~~e~A~a~~~ 539 (545)
+ +.++++ ++|+++|++||.|+.+ ..+|+|||+|.+.++|..|+.
T Consensus 186 l--~~~~te--------e~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~ 237 (562)
T TIGR01628 186 L--DPSVNE--------DKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVE 237 (562)
T ss_pred C--CCcCCH--------HHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHH
Confidence 7 334433 4899999999999998 457899999999999976653
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2.2e-32 Score=279.27 Aligned_cols=223 Identities=17% Similarity=0.242 Sum_probs=179.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec-Cce
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE-GAP 321 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~-g~~ 321 (545)
..++|||+|||++++|++|+++|++||.|..++ ++.+ ..+.++|||||+|.+.++|++|| .||+..|. |+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vr------l~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~ 129 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELR------LMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRL 129 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEE------EEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcc
Confidence 458999999999999999999999999987765 3444 67899999999999999999999 89998885 777
Q ss_pred eEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ccEEEEee-
Q 009052 322 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLVK- 399 (545)
Q Consensus 322 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~i~~- 399 (545)
|.|.++. ..++|||+|||..+++++|.++|++++. ++.+.+..
T Consensus 130 l~V~~S~-----------------------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~ 174 (578)
T TIGR01648 130 LGVCISV-----------------------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHS 174 (578)
T ss_pred ccccccc-----------------------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecc
Confidence 7665421 1248999999999999999999999874 55544432
Q ss_pred cCCCCCcceEEEEEecChHHHHHHHHHhCC--CccCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 009052 400 DRETGNSKGYAFCVYQDLSVTDIACAALNG--IKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVP 477 (545)
Q Consensus 400 ~~~~g~~~g~afV~f~~~e~A~~A~~~l~g--~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (545)
....+.++|||||+|.+.++|..|+..|+. ..+.|+.|.|.|+.+..... ......
T Consensus 175 ~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d----------------------~~~~~~ 232 (578)
T TIGR01648 175 AADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVD----------------------EDVMAK 232 (578)
T ss_pred ccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccc----------------------cccccc
Confidence 233567899999999999999999988863 46789999999996543211 001234
Q ss_pred ceeEEecCCCCcccCCChHHHHHHHHHHHHHHhcc--CCceee-cCCceEEEEeCCCCCcCccccc
Q 009052 478 SKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF--AFCSPT-FCYKESGLIYTDRRLHNPQFVY 540 (545)
Q Consensus 478 ~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~f--G~V~~v-~~~g~afV~F~~~e~A~a~~~~ 540 (545)
.++|+|.|+ +.++++ ++|+++|++| |.|+.| ..+++|||+|.+.++|.+|+.-
T Consensus 233 ~k~LfVgNL--~~~~te--------e~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 233 VKILYVRNL--MTTTTE--------EIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDE 288 (578)
T ss_pred ccEEEEeCC--CCCCCH--------HHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHH
Confidence 578999998 334433 4899999999 999999 6788999999999999877643
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=238.75 Aligned_cols=252 Identities=19% Similarity=0.271 Sum_probs=198.3
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
......|+|.-||..+|+++|+.+|...|+|.+|+ .|.+..++.+-||+||.|.++++|++|+ .|||..|..+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScK------LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K 111 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCK------LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK 111 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeee------eeeccccccccccceeeecChHHHHHHHhhhcceeeccc
Confidence 34456799999999999999999999999999998 7999999999999999999999999999 9999999999
Q ss_pred eeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeec
Q 009052 321 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 400 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 400 (545)
.|+|.++...... .....|||.+||..++..+|.++|++||.|..-+|+.+
T Consensus 112 TIKVSyARPSs~~-----------------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~d 162 (360)
T KOG0145|consen 112 TIKVSYARPSSDS-----------------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVD 162 (360)
T ss_pred eEEEEeccCChhh-----------------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhh
Confidence 9999987543221 11237999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEecChHHHHHHHHHhCCCccCC--eEEEEEEcCCCCCCCChhhHHH------------HHHHHHHHHH
Q 009052 401 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRANQGANQPKPEQESV------------LLHAQQQIAL 466 (545)
Q Consensus 401 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~~~~~~~~~~------------~~~~~~~~~~ 466 (545)
..+|.++|.+||.|+...+|..||..|||..-.| .+|.|.|++............. +..+.+...+
T Consensus 163 qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~ 242 (360)
T KOG0145|consen 163 QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRL 242 (360)
T ss_pred cccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhcc
Confidence 8899999999999999999999999999998766 5799999976642211110000 0000011100
Q ss_pred ---------H---------------HhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee----
Q 009052 467 ---------Q---------------RLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT---- 518 (545)
Q Consensus 467 ---------~---------------~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v---- 518 (545)
+ .+..+.......|+++.|+....+ + .-|-++|.+||.|+.|
T Consensus 243 ~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~d--e--------~~LWQlFgpFGAv~nVKvir 312 (360)
T KOG0145|consen 243 DNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDAD--E--------SILWQLFGPFGAVTNVKVIR 312 (360)
T ss_pred ccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCch--H--------hHHHHHhCcccceeeEEEEe
Confidence 0 011122344577888888843321 1 2577899999999999
Q ss_pred -----cCCceEEEEeCCCCCcCccc
Q 009052 519 -----FCYKESGLIYTDRRLHNPQF 538 (545)
Q Consensus 519 -----~~~g~afV~F~~~e~A~a~~ 538 (545)
.++||+||.+.+-++|.-|.
T Consensus 313 D~ttnkCKGfgFVtMtNYdEAamAi 337 (360)
T KOG0145|consen 313 DFTTNKCKGFGFVTMTNYDEAAMAI 337 (360)
T ss_pred cCCcccccceeEEEecchHHHHHHH
Confidence 79999999999999985443
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=8.6e-32 Score=285.94 Aligned_cols=246 Identities=20% Similarity=0.309 Sum_probs=191.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeE
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 323 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~ 323 (545)
..+|||+|||.++++++|+++|+.||.|++++ |.....+.++|||||+|.+.++|..|+ .+||..+.|+.|.
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~-------i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCK-------VATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeE-------eeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 45799999999999999999999999988765 444456778999999999999999999 9999999999999
Q ss_pred EeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCC
Q 009052 324 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 403 (545)
Q Consensus 324 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~ 403 (545)
|.......... .......++|||+|||..+++++|+++|+.||.|..+.+..+ .+
T Consensus 161 v~~~~~~~~~~------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~ 215 (562)
T TIGR01628 161 VGRFIKKHERE------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GS 215 (562)
T ss_pred Eeccccccccc------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CC
Confidence 97543222110 001122357999999999999999999999999999999988 47
Q ss_pred CCcceEEEEEecChHHHHHHHHHhCCCccC----CeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCce
Q 009052 404 GNSKGYAFCVYQDLSVTDIACAALNGIKMG----DKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSK 479 (545)
Q Consensus 404 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~----g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (545)
|.++|||||+|.+.++|.+|++.|+|..|. |+.|.|.++..+.. ....+.....+..... .......
T Consensus 216 g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e-----r~~~~~~~~~~~~~~~----~~~~~~~ 286 (562)
T TIGR01628 216 GRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE-----REAELRRKFEELQQER----KMKAQGV 286 (562)
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh-----hHHHHHhhHHhhhhhh----hcccCCC
Confidence 889999999999999999999999999999 99999999854432 2222222222211111 1123344
Q ss_pred eEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee--------cCCceEEEEeCCCCCcCcccccc
Q 009052 480 VVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT--------FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 480 ~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v--------~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
.|+|.|+ +..+++ ++|+++|++||.|+.| ..+|+|||+|.+.++|.+|+..+
T Consensus 287 ~l~V~nl--~~~~~~--------~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~ 346 (562)
T TIGR01628 287 NLYVKNL--DDTVTD--------EKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEM 346 (562)
T ss_pred EEEEeCC--CCccCH--------HHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHh
Confidence 5777777 333333 4899999999999988 45799999999999998876543
No 12
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.3e-31 Score=251.67 Aligned_cols=223 Identities=17% Similarity=0.261 Sum_probs=186.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCcee-cCc
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF-EGA 320 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~-~g~ 320 (545)
...|.|||+.||.++.|++|.-+|+..|+|..+. ++++...+.++|||||.|.+.+.|+.|+ .||+..| .|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elR------LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELR------LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEE------EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 4568899999999999999999999999998876 6667688999999999999999999999 8999887 688
Q ss_pred eeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ccEEEEee
Q 009052 321 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLVK 399 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~i~~ 399 (545)
.|.|....+ .++|||+|||.++++++|.+.|++.+. |+.|.|..
T Consensus 155 ~igvc~Sva-----------------------------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~ 199 (506)
T KOG0117|consen 155 LLGVCVSVA-----------------------------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYP 199 (506)
T ss_pred EeEEEEeee-----------------------------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEec
Confidence 888853211 258999999999999999999999987 88888877
Q ss_pred cCC-CCCcceEEEEEecChHHHHHHHHHhC--CCccCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCC
Q 009052 400 DRE-TGNSKGYAFCVYQDLSVTDIACAALN--GIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSV 476 (545)
Q Consensus 400 ~~~-~g~~~g~afV~f~~~e~A~~A~~~l~--g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (545)
.+. ..+++|||||+|.+...|..|...|- .++|.|..+.|.||.+..... .. ...
T Consensus 200 ~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~d---ed-------------------~ms 257 (506)
T KOG0117|consen 200 SPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPD---ED-------------------TMS 257 (506)
T ss_pred CccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCC---hh-------------------hhh
Confidence 754 56789999999999999999987773 457899999999996654321 10 123
Q ss_pred CceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-cCCceEEEEeCCCCCcCccc
Q 009052 477 PSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-FCYKESGLIYTDRRLHNPQF 538 (545)
Q Consensus 477 ~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v-~~~g~afV~F~~~e~A~a~~ 538 (545)
.+++|++.|+. .+ .++|.|+++|+.||+|..| ..+.+|||.|.+.++|.+|+
T Consensus 258 ~VKvLYVRNL~--~~--------tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 258 KVKVLYVRNLM--ES--------TTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAM 310 (506)
T ss_pred heeeeeeeccc--hh--------hhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHH
Confidence 47899999993 22 3456999999999999999 67889999999999996664
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=7.1e-31 Score=271.49 Aligned_cols=256 Identities=17% Similarity=0.157 Sum_probs=182.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-H--cCCceecCc
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-A--LDGIIFEGA 320 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~--l~g~~~~g~ 320 (545)
++++|||+|||+++|+++|+++|+.||. |..+.+..+++||||+|.+.++|+.|+ . +++..|.|+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~------------V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~ 68 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGP------------VSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQ 68 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCC------------eeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCe
Confidence 4689999999999999999999999996 445555568899999999999999999 4 578999999
Q ss_pred eeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeec
Q 009052 321 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 400 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 400 (545)
+|.|.++.......... .. ..........+|+|.||++.+++++|+++|+.||.|+.|.|.++
T Consensus 69 ~l~v~~s~~~~~~~~~~-------~~----------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~ 131 (481)
T TIGR01649 69 PAFFNYSTSQEIKRDGN-------SD----------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTK 131 (481)
T ss_pred EEEEEecCCcccccCCC-------Cc----------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEec
Confidence 99999876432111000 00 00011112247999999999999999999999999999999876
Q ss_pred CCCCCcceEEEEEecChHHHHHHHHHhCCCccCC--eEEEEEEcCCCCCC------CC--------h-hhHHHHHHH--H
Q 009052 401 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRANQGANQ------PK--------P-EQESVLLHA--Q 461 (545)
Q Consensus 401 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~~------~~--------~-~~~~~~~~~--~ 461 (545)
. ..|+|||+|.+.++|.+|++.|||..|.| +.|+|.|+...... .. + .....+... .
T Consensus 132 ~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~ 207 (481)
T TIGR01649 132 N----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQ 207 (481)
T ss_pred C----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccc
Confidence 3 14799999999999999999999999954 58999998653310 00 0 000000000 0
Q ss_pred HHHHH--------------------------HHh-------------------------hcCCCCCCceeEEecCCCCcc
Q 009052 462 QQIAL--------------------------QRL-------------------------MLQPGSVPSKVVCLTQVVSAD 490 (545)
Q Consensus 462 ~~~~~--------------------------~~~-------------------------~~~~~~~~~~~~~l~n~~~~~ 490 (545)
.+..+ ..+ .......++.+|+|.|+. .+
T Consensus 208 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~-~~ 286 (481)
T TIGR01649 208 RQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLH-QE 286 (481)
T ss_pred cccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCC-CC
Confidence 00000 000 000012366789999982 12
Q ss_pred cCCChHHHHHHHHHHHHHHhccCCceee----cCCceEEEEeCCCCCcCcccccc
Q 009052 491 ELKDDEEYEEILEDMRQEGGKFAFCSPT----FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 491 ~l~~~~~~~~~~~~l~~~f~~fG~V~~v----~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
.+++ ++|+++|+.||.|+.| ..+|+|||+|.+.++|..|+..+
T Consensus 287 ~vt~--------~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~l 333 (481)
T TIGR01649 287 KVNC--------DRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHL 333 (481)
T ss_pred CCCH--------HHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHh
Confidence 3433 3899999999999999 45799999999999998777543
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=5.3e-31 Score=256.77 Aligned_cols=171 Identities=21% Similarity=0.332 Sum_probs=150.6
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
.....++|||+|||+++|+++|+++|..||.|+.++ ++.+..++.++|||||+|.++++|.+|| .|++..|.+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~------i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g 176 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCR------IMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN 176 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC
Confidence 344678999999999999999999999999987765 4556677889999999999999999999 899999999
Q ss_pred ceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEee
Q 009052 320 APVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 399 (545)
Q Consensus 320 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~ 399 (545)
++|+|.++...... ...++|||.|||..+++++|+++|++||.|+.|.|+.
T Consensus 177 r~i~V~~a~p~~~~-----------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~ 227 (346)
T TIGR01659 177 KRLKVSYARPGGES-----------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILR 227 (346)
T ss_pred ceeeeecccccccc-----------------------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEee
Confidence 99999886432110 0124799999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEecChHHHHHHHHHhCCCccCC--eEEEEEEcCCCC
Q 009052 400 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRANQGA 446 (545)
Q Consensus 400 ~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~l~v~~a~~~~ 446 (545)
++.++.++|||||+|.+.++|++||+.||+..|.+ +.|.|.++....
T Consensus 228 d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 228 DKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 98899999999999999999999999999998866 789999996654
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.5e-30 Score=249.95 Aligned_cols=193 Identities=19% Similarity=0.277 Sum_probs=150.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
.||||++||+.++.++|.++|+.+|+|..+. +|.+.-.+.++|||||.|.-.++++.|+ .+++..|.|+.|.|
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~------vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v 79 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAV------VVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNV 79 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeE------EecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccc
Confidence 6899999999999999999999999998875 4444455678999999999999999999 89999999999999
Q ss_pred eCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCC
Q 009052 325 RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG 404 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g 404 (545)
..+...........+.. ...........+.......+...|+|+|||+.+...+|+.+|+.||.|..|.|++.+..+
T Consensus 80 ~~A~~R~r~e~~~~~e~---~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk 156 (678)
T KOG0127|consen 80 DPAKKRARSEEVEKGEN---KAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK 156 (678)
T ss_pred ccccccccchhcccccc---hhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCC
Confidence 87765543321110000 000000000000001111123479999999999999999999999999999999886555
Q ss_pred CcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCC
Q 009052 405 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQ 448 (545)
Q Consensus 405 ~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 448 (545)
. .|||||+|....+|..||+.|||..|+|++|-|.||..+...
T Consensus 157 l-cGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 157 L-CGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred c-cceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 5 499999999999999999999999999999999999777643
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.8e-29 Score=261.11 Aligned_cols=274 Identities=19% Similarity=0.173 Sum_probs=182.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC--ce
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG--AP 321 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g--~~ 321 (545)
..+|||+||++.+|+++|+++|+.||.|..+. +......++|||+|.+.++|.+|+ .|||..|.| +.
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~----------i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~ 165 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIV----------TFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCT 165 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEE----------EEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceE
Confidence 35799999999999999999999999864431 112233479999999999999999 899999865 47
Q ss_pred eEEeCCCCCCCC------cc----cc-C-C--C---------CCCCC---------Cccccc-----------ccCC---
Q 009052 322 VKVRRPSDYNPS------LA----AT-L-G--P---------SQPNP---------NLNLAA-----------VGLT--- 355 (545)
Q Consensus 322 l~v~~~~~~~~~------~~----~~-~-~--~---------~~~~~---------~~~~~~-----------~~~~--- 355 (545)
|+|.|++...-. .. .. . + . ..+.. ...... ....
T Consensus 166 l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 245 (481)
T TIGR01649 166 LKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPH 245 (481)
T ss_pred EEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcc
Confidence 888776532100 00 00 0 0 0 00000 000000 0000
Q ss_pred -------------C---C----CCCCCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEe
Q 009052 356 -------------P---G----SAGGLEGPDRIFVGGLPY-YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 414 (545)
Q Consensus 356 -------------~---~----~~~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f 414 (545)
+ . ......+.++|||+|||. .+++++|+++|+.||.|..|.|+.++ +|+|||+|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f 320 (481)
T TIGR01649 246 GPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEM 320 (481)
T ss_pred cCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEE
Confidence 0 0 000112446899999997 69999999999999999999998873 79999999
Q ss_pred cChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCChhh--HHHHH--HHHHHHHHHHhh------cCCCCCCceeEEec
Q 009052 415 QDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQ--ESVLL--HAQQQIALQRLM------LQPGSVPSKVVCLT 484 (545)
Q Consensus 415 ~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~l~ 484 (545)
.+.++|..||..|||..|.|+.|.|.++........... ...+. ............ ......++.+|+|.
T Consensus 321 ~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~ 400 (481)
T TIGR01649 321 ADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLS 400 (481)
T ss_pred CCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEe
Confidence 999999999999999999999999999866532211100 00000 000000000000 00112467889999
Q ss_pred CCCCcccCCChHHHHHHHHHHHHHHhccCC--ceee---c----CCceEEEEeCCCCCcCcccccccc
Q 009052 485 QVVSADELKDDEEYEEILEDMRQEGGKFAF--CSPT---F----CYKESGLIYTDRRLHNPQFVYFYI 543 (545)
Q Consensus 485 n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~--V~~v---~----~~g~afV~F~~~e~A~a~~~~~~~ 543 (545)
|+ +.++++ ++|+++|+.||. |+.| . ..|+|||+|.+.++|..|+..+..
T Consensus 401 NL--p~~~te--------e~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~ 458 (481)
T TIGR01649 401 NI--PLSVSE--------EDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNH 458 (481)
T ss_pred cC--CCCCCH--------HHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcC
Confidence 99 445544 389999999998 7666 2 258999999999999877765443
No 17
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=237.60 Aligned_cols=180 Identities=25% Similarity=0.357 Sum_probs=153.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
-.-.|+|||+.|.+.+.|+.|+..|..||+|++++ ...+..+++++|||||+|.-+|.|+.|+ .|||..++|+
T Consensus 110 LaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSIn------MSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR 183 (544)
T KOG0124|consen 110 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSIN------MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR 183 (544)
T ss_pred HHHhHheeeeeeEEEechHHHHhhccCCCCcceee------cccccccccccceEEEEEeCcHHHHHHHHHhccccccCc
Confidence 34579999999999999999999999999998876 5666778999999999999999999999 8999999999
Q ss_pred eeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeec
Q 009052 321 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 400 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 400 (545)
.|+|.++....+....- ...........+|||..+-++++++||+.+|+.||+|+.|.+.+.
T Consensus 184 NiKVgrPsNmpQAQpiI------------------D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~ 245 (544)
T KOG0124|consen 184 NIKVGRPSNMPQAQPII------------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA 245 (544)
T ss_pred cccccCCCCCcccchHH------------------HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeecc
Confidence 99999876443211000 000011122358999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 401 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 401 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
+..+.++||+||+|.+......|+..||=+.|+|..|+|..+...
T Consensus 246 pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 246 PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred CCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 988999999999999999999999999999999999999887443
No 18
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9.2e-30 Score=224.18 Aligned_cols=214 Identities=22% Similarity=0.343 Sum_probs=163.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCcee
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l 322 (545)
...+||||+||...+||+-|..+|++.|.+..++ +|.+ .|
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k------~i~~----------------------------------e~ 43 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTK------VIFD----------------------------------EL 43 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccce------eehh----------------------------------hh
Confidence 4578999999999999999999999999876665 2211 45
Q ss_pred EEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCC
Q 009052 323 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE 402 (545)
Q Consensus 323 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~ 402 (545)
+|.|+.... .+..+.. .....+||+.|...++-++|++.|.+||.|.+++|++|..
T Consensus 44 ~v~wa~~p~---------nQsk~t~---------------~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~ 99 (321)
T KOG0148|consen 44 KVNWATAPG---------NQSKPTS---------------NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMN 99 (321)
T ss_pred ccccccCcc---------cCCCCcc---------------ccceeEEehhcchhcchHHHHHHhccccccccceEeeccc
Confidence 666654321 0011110 0123699999999999999999999999999999999999
Q ss_pred CCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEE
Q 009052 403 TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVC 482 (545)
Q Consensus 403 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (545)
|+++|||+||.|-+.++|+.||..|||.+|++|.|+-.||..+........ .....+..+.... ...|+
T Consensus 100 T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~----------ltfdeV~NQssp~-NtsVY 168 (321)
T KOG0148|consen 100 TGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKP----------LTFDEVYNQSSPD-NTSVY 168 (321)
T ss_pred CCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCC----------ccHHHHhccCCCC-CceEE
Confidence 999999999999999999999999999999999999999987763322221 2222233322222 22344
Q ss_pred ecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee---cCCceEEEEeCCCCCcCcccccc
Q 009052 483 LTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT---FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 483 l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v---~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
+.|+.. .|+++ +|+..|+.||.|.+| +.+|++||+|.+.|+|.+|++..
T Consensus 169 ~G~I~~--~lte~--------~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 169 VGNIAS--GLTED--------LMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred eCCcCc--cccHH--------HHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHh
Confidence 455522 34443 899999999999999 89999999999999998887753
No 19
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=9e-28 Score=241.20 Aligned_cols=197 Identities=24% Similarity=0.392 Sum_probs=146.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC--c
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG--A 320 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g--~ 320 (545)
..++|||+|||+.+++++|..+|..||.|..+. ++.+...+.++|||||+|.+.++|+.|+ .|||..+.| .
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~------~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~ 161 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSR------ILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTE 161 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEE------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCce
Confidence 456899999999999999999999999875543 2223335678999999999999999999 899999887 5
Q ss_pred eeEEeCCCCCCCCccccC--------CCCCCC-------------CCc--------------------------------
Q 009052 321 PVKVRRPSDYNPSLAATL--------GPSQPN-------------PNL-------------------------------- 347 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~~--------~~~~~~-------------~~~-------------------------------- 347 (545)
+|.|.++........... .+.... +..
T Consensus 162 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR01661 162 PITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAA 241 (352)
T ss_pred eEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccc
Confidence 678877643321000000 000000 000
Q ss_pred --------ccccccC--CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecCh
Q 009052 348 --------NLAAVGL--TPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL 417 (545)
Q Consensus 348 --------~~~~~~~--~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 417 (545)
....... ............+|||+|||..+++++|.++|++||.|+.|.|+.++.+|.++|||||+|.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~ 321 (352)
T TIGR01661 242 QRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNY 321 (352)
T ss_pred ccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCH
Confidence 0000000 000001112234799999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHhCCCccCCeEEEEEEcCCCC
Q 009052 418 SVTDIACAALNGIKMGDKTLTVRRANQGA 446 (545)
Q Consensus 418 e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 446 (545)
++|.+||..|||..|+|+.|.|.|+..+.
T Consensus 322 ~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 322 DEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999999999996654
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=2.5e-27 Score=246.29 Aligned_cols=189 Identities=22% Similarity=0.272 Sum_probs=137.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeE
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 323 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~ 323 (545)
.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|++|.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~------~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~ 259 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQ------LHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIK 259 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEE
Confidence 68999999999999999999999999876554 3333345678999999999999999999 8999999999999
Q ss_pred EeCCCCCCCCccccC-----------CC----------------------C-CCCCCc------ccccccCCC-------
Q 009052 324 VRRPSDYNPSLAATL-----------GP----------------------S-QPNPNL------NLAAVGLTP------- 356 (545)
Q Consensus 324 v~~~~~~~~~~~~~~-----------~~----------------------~-~~~~~~------~~~~~~~~~------- 356 (545)
|.++........... +. . .+.... .....+...
T Consensus 260 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (457)
T TIGR01622 260 VGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRY 339 (457)
T ss_pred EEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccc
Confidence 999764321111000 00 0 000000 000000000
Q ss_pred ----------C----CCCCCCCCCeEEEcCCCCCCC----------HHHHHHHHHhcCCccEEEEeecCCCCCcceEEEE
Q 009052 357 ----------G----SAGGLEGPDRIFVGGLPYYFT----------EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFC 412 (545)
Q Consensus 357 ----------~----~~~~~~~~~~l~v~nlp~~~~----------~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV 412 (545)
. .........+|+|.||....+ .++|+++|++||.|+.|.|... ...|++||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV 415 (457)
T TIGR01622 340 ATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYL 415 (457)
T ss_pred cccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEE
Confidence 0 000123456799999954433 3689999999999999998643 34799999
Q ss_pred EecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 413 VYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 413 ~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
+|.+.++|.+|+..|||.+|+|+.|.|.|..
T Consensus 416 ~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 416 KFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred EECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 9999999999999999999999999999983
No 21
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.4e-28 Score=213.04 Aligned_cols=183 Identities=18% Similarity=0.385 Sum_probs=154.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeE
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 323 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~ 323 (545)
.-.|||+.|.+.++-++|++.|.+||+|..++ +|.+..++++||||||-|.+.++|+.|| .|||.=|+++.|+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~ak------virD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAK------VIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccce------EeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 45799999999999999999999999998887 8999999999999999999999999999 9999999999999
Q ss_pred EeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCC
Q 009052 324 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 403 (545)
Q Consensus 324 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~ 403 (545)
-.|+.-....... .+ .... . -.-......++|||+||+..++|++|++.|++||.|.+|+|.++
T Consensus 136 TNWATRKp~e~n~-----~~-ltfd--e-----V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~--- 199 (321)
T KOG0148|consen 136 TNWATRKPSEMNG-----KP-LTFD--E-----VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD--- 199 (321)
T ss_pred ccccccCccccCC-----CC-ccHH--H-----HhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---
Confidence 9998654411000 00 0000 0 00011123368999999999999999999999999999999998
Q ss_pred CCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCChh
Q 009052 404 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPE 452 (545)
Q Consensus 404 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~ 452 (545)
+|||||.|.+.|.|.+||..|||..++|..|+|.|.+.........
T Consensus 200 ---qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~~~ 245 (321)
T KOG0148|consen 200 ---QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGINNQ 245 (321)
T ss_pred ---cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCCch
Confidence 8999999999999999999999999999999999997776554443
No 22
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=4e-26 Score=223.54 Aligned_cols=215 Identities=16% Similarity=0.278 Sum_probs=172.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
..|||+ +++|+.+|.++|+.+|.+++++ +..+. + +-|||||.|.++++|.+|| +||...|.|++|+|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~r------vc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ri 69 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIR------VCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRI 69 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEE------EeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEe
Confidence 368999 9999999999999999999886 44444 4 9999999999999999999 99999999999999
Q ss_pred eCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCC
Q 009052 325 RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG 404 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g 404 (545)
.|..... ..|||.||++.++..+|.++|+.||.|++|++..+. .|
T Consensus 70 m~s~rd~----------------------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g 114 (369)
T KOG0123|consen 70 MWSQRDP----------------------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG 114 (369)
T ss_pred ehhccCC----------------------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC
Confidence 9854221 139999999999999999999999999999999994 56
Q ss_pred CcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEec
Q 009052 405 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLT 484 (545)
Q Consensus 405 ~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (545)
++|| ||+|+++++|.+|+..|||..+.|+.|.|.....+.....+... .. +. ... +.+.
T Consensus 115 -~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~~---------~~------~t~---v~vk 173 (369)
T KOG0123|consen 115 -SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-YK---------KR------FTN---VYVK 173 (369)
T ss_pred -ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-hh---------hh------hhh---hhee
Confidence 8999 99999999999999999999999999999988554432222111 00 00 001 1111
Q ss_pred CCCCcccCCChHHHHHHHHHHHHHHhccCCceee--------cCCceEEEEeCCCCCcCccc
Q 009052 485 QVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT--------FCYKESGLIYTDRRLHNPQF 538 (545)
Q Consensus 485 n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v--------~~~g~afV~F~~~e~A~a~~ 538 (545)
|. ..+.. .+.|.+.|..||.|+.+ ...|++||.|.+.++|..++
T Consensus 174 ~~--~~~~~--------~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av 225 (369)
T KOG0123|consen 174 NL--EEDST--------DEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAV 225 (369)
T ss_pred cc--ccccc--------hHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHH
Confidence 11 11112 23899999999999999 46899999999999985544
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=4.1e-26 Score=223.50 Aligned_cols=241 Identities=22% Similarity=0.305 Sum_probs=188.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEEeC
Q 009052 248 VYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRR 326 (545)
Q Consensus 248 l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v~~ 326 (545)
|||.||+++++..+|.++|+.||.|++|+ |.....+ ++|| ||+|.+.++|++|+ .+||..+.|++|.|..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~k-------v~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~ 149 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCK-------VATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGL 149 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEE-------EEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEee
Confidence 99999999999999999999999999886 4444444 8999 99999999999999 9999999999999976
Q ss_pred CCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCc
Q 009052 327 PSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNS 406 (545)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~ 406 (545)
............. .......++|.|++..++++.|..+|..||.|.++.++.+ ..|.+
T Consensus 150 ~~~~~er~~~~~~---------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~ 207 (369)
T KOG0123|consen 150 FERKEEREAPLGE---------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD-SIGKS 207 (369)
T ss_pred ccchhhhcccccc---------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec-CCCCC
Confidence 5443321111100 1111246999999999999999999999999999999998 46779
Q ss_pred ceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCC
Q 009052 407 KGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQV 486 (545)
Q Consensus 407 ~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~ 486 (545)
+||+||+|.+.++|..|+..|+|..+++..+.|..+.. ..+....+...+.+...+.. .......+++.|+
T Consensus 208 ~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk-----k~e~~~~l~~~~~~~~~~~~----~~~~~~nl~vknl 278 (369)
T KOG0123|consen 208 KGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK-----KSEREAELKRKFEQEFAKRS----VSLQGANLYVKNL 278 (369)
T ss_pred CCccceeecChhHHHHHHHhccCCcCCccceeeccccc-----chhhHHHHhhhhHhhhhhcc----ccccccccccccC
Confidence 99999999999999999999999999999999998844 33333334333333322221 2344555666664
Q ss_pred CCcccCCChHHHHHHHHHHHHHHhccCCceee--------cCCceEEEEeCCCCCcCccc
Q 009052 487 VSADELKDDEEYEEILEDMRQEGGKFAFCSPT--------FCYKESGLIYTDRRLHNPQF 538 (545)
Q Consensus 487 ~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v--------~~~g~afV~F~~~e~A~a~~ 538 (545)
...+.+ +.|+..|+.||.|+.+ ...|++||+|.+.++|..++
T Consensus 279 --d~~~~~--------e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~ 328 (369)
T KOG0123|consen 279 --DETLSD--------EKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAM 328 (369)
T ss_pred --ccccch--------hHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHH
Confidence 222222 2899999999999997 78999999999999996664
No 24
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.94 E-value=1.4e-26 Score=224.39 Aligned_cols=190 Identities=19% Similarity=0.217 Sum_probs=137.4
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+...|||+||..++++++|+.+|+.||.|..+. ..++..+|.++|||||+|.+.++|.+|+ .|||+.|.|+
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~------l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr 348 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQ------LTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGR 348 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeee------eccccccccccCcceEEEecHHHHHHHHHHhccceecCc
Confidence 34555699999999999999999999999986554 5566669999999999999999999999 9999999999
Q ss_pred eeEEeCCCCCCCCcccc------------------CC---------CCCC---C----CCcc--------cccccCCC-C
Q 009052 321 PVKVRRPSDYNPSLAAT------------------LG---------PSQP---N----PNLN--------LAAVGLTP-G 357 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~------------------~~---------~~~~---~----~~~~--------~~~~~~~~-~ 357 (545)
.|+|............. .+ +... . ..+. ....+... .
T Consensus 349 ~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 428 (549)
T KOG0147|consen 349 LIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVR 428 (549)
T ss_pred eEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCcc
Confidence 99995433222111000 00 0000 0 0000 00000000 0
Q ss_pred C-------CCCCCCCCeEEEcCC--CCCCC--------HHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHH
Q 009052 358 S-------AGGLEGPDRIFVGGL--PYYFT--------EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVT 420 (545)
Q Consensus 358 ~-------~~~~~~~~~l~v~nl--p~~~~--------~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A 420 (545)
. +....++.++.|.|| |...| .+||.+.|++||+|..|.|.+. +-|+.||.|.+.+.|
T Consensus 429 ~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A 503 (549)
T KOG0147|consen 429 SVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAA 503 (549)
T ss_pred ccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHH
Confidence 0 011134457888888 33333 2799999999999999998655 249999999999999
Q ss_pred HHHHHHhCCCccCCeEEEEEEc
Q 009052 421 DIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 421 ~~A~~~l~g~~~~g~~l~v~~a 442 (545)
..|+.+|||.+|.|+.|++.|.
T Consensus 504 ~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 504 GTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHHHHHhhhhhccceeEEEEe
Confidence 9999999999999999999997
No 25
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=1.7e-26 Score=192.03 Aligned_cols=170 Identities=25% Similarity=0.427 Sum_probs=145.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
...||||+||+..++++.|.++|-+.|+|+.+. .-.+..+...+|||||+|.+.|+|.-|+ -||...|.|++|
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~------iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpI 81 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLH------IPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPI 81 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeee------cchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCcee
Confidence 456899999999999999999999999866554 2233344567999999999999999999 799999999999
Q ss_pred EEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccE-EEEeecC
Q 009052 323 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRG-FDLVKDR 401 (545)
Q Consensus 323 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-v~i~~~~ 401 (545)
+|..+..... ......+|||+||.+.+.+..|.+.|+.||.|.. -.|++++
T Consensus 82 rv~kas~~~~----------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~ 133 (203)
T KOG0131|consen 82 RVNKASAHQK----------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDP 133 (203)
T ss_pred EEEecccccc----------------------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccc
Confidence 9987652211 1111248999999999999999999999999654 5788888
Q ss_pred CCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCC
Q 009052 402 ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 447 (545)
Q Consensus 402 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 447 (545)
.||.++|||||.|.+.|.+.+|+..|||..++++.|.|.|+..+..
T Consensus 134 ~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 134 DTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred cCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 8999999999999999999999999999999999999999976654
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=6.6e-26 Score=212.34 Aligned_cols=171 Identities=27% Similarity=0.432 Sum_probs=146.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCc-eecC-
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGI-IFEG- 319 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~-~~~g- 319 (545)
...-+|||+-||..++|.||+++|++||.|..++ ++.|..++.++|||||.|.+.++|.+|+ +|+++ .|-|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~ein------l~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEIN------LIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEE------eecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 4556899999999999999999999999998887 7888889999999999999999999999 77765 4655
Q ss_pred -ceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEe
Q 009052 320 -APVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 398 (545)
Q Consensus 320 -~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~ 398 (545)
.+|.|+++....... ....+|||+-|+..++|.+|+++|++||.|++|.|+
T Consensus 106 ~~pvqvk~Ad~E~er~----------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~il 157 (510)
T KOG0144|consen 106 HHPVQVKYADGERERI----------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYIL 157 (510)
T ss_pred Ccceeecccchhhhcc----------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhhe
Confidence 478887765332111 012489999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEecChHHHHHHHHHhCCCc-c--CCeEEEEEEcCCCCCC
Q 009052 399 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIK-M--GDKTLTVRRANQGANQ 448 (545)
Q Consensus 399 ~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~-~--~g~~l~v~~a~~~~~~ 448 (545)
++ ..+.++|||||.|.+.|.|..||++|||.. + +..+|.|.||..+...
T Consensus 158 rd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 158 RD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 99 589999999999999999999999999864 4 4578999999766543
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.7e-25 Score=214.00 Aligned_cols=195 Identities=23% Similarity=0.357 Sum_probs=144.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
+..+|+|+|||+.+...+|..+|+.||.|+.+.++ ...-+.-.|||||+|....+|..|| .+|+..|.|++|
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP-------~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~V 188 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIP-------RKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPV 188 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcc-------cCCCCCccceEEEEEeeHHHHHHHHHhccCceecCcee
Confidence 36799999999999999999999999976544311 1112333599999999999999999 899999999999
Q ss_pred EEeCCCCCCCCcccc------C----------------CC----------CCCCCCcc------------------ccc-
Q 009052 323 KVRRPSDYNPSLAAT------L----------------GP----------SQPNPNLN------------------LAA- 351 (545)
Q Consensus 323 ~v~~~~~~~~~~~~~------~----------------~~----------~~~~~~~~------------------~~~- 351 (545)
-|.|+-..+...... . +. .......+ ...
T Consensus 189 AVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~ 268 (678)
T KOG0127|consen 189 AVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDE 268 (678)
T ss_pred EEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccc
Confidence 999986544322210 0 00 00000000 000
Q ss_pred --ccCCCC--------CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHH
Q 009052 352 --VGLTPG--------SAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTD 421 (545)
Q Consensus 352 --~~~~~~--------~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~ 421 (545)
.+.... ......-..+|||+|||++++++.|.+.|++||.|..+.|+.++.|+.++|+|||.|.+..+|+
T Consensus 269 e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~ 348 (678)
T KOG0127|consen 269 ESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQ 348 (678)
T ss_pred cccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHH
Confidence 000000 0111122268999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-----CC-CccCCeEEEEEEcCCC
Q 009052 422 IACAAL-----NG-IKMGDKTLTVRRANQG 445 (545)
Q Consensus 422 ~A~~~l-----~g-~~~~g~~l~v~~a~~~ 445 (545)
.||.+. .| ..|.|+.|.|..+...
T Consensus 349 ~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 349 NCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred HHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 999876 24 7789999999998443
No 28
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2e-24 Score=189.22 Aligned_cols=197 Identities=23% Similarity=0.375 Sum_probs=153.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc-
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA- 320 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~- 320 (545)
-....|||.+||..+|..+|.++|++||.|+-.+ ++.+..++.++|.|||.|....+|+.|+ .|||..--|.
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSR------iL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~t 198 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSR------ILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCT 198 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhhh------hhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCC
Confidence 4556899999999999999999999999987665 5667778999999999999999999999 9999987664
Q ss_pred -eeEEeCCCCCCCCcccc-----CCCC-----CCCCC-ccc-----------ccccCC------------CCCCCCCCCC
Q 009052 321 -PVKVRRPSDYNPSLAAT-----LGPS-----QPNPN-LNL-----------AAVGLT------------PGSAGGLEGP 365 (545)
Q Consensus 321 -~l~v~~~~~~~~~~~~~-----~~~~-----~~~~~-~~~-----------~~~~~~------------~~~~~~~~~~ 365 (545)
+|.|+++.......... ...+ .+... .+. ....+. ...+......
T Consensus 199 epItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g 278 (360)
T KOG0145|consen 199 EPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGG 278 (360)
T ss_pred CCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCe
Confidence 79998876543211110 0000 00000 000 000000 0112223345
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
.+|||-||.++..|.-|.++|.+||.|..|+|++|..+.+.+|||||.+.+.++|..||..|||..++++.|.|.|...+
T Consensus 279 ~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 279 WCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred eEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 68999999999999999999999999999999999888999999999999999999999999999999999999997543
No 29
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.4e-23 Score=197.80 Aligned_cols=164 Identities=22% Similarity=0.344 Sum_probs=138.1
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe-------cCCCcEEEEEecCHHHHHHHH-H-c
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI-------NHEKKFAFVEMRSVEEASNAM-A-L 312 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~-------~~~~g~afV~F~~~~~A~~a~-~-l 312 (545)
+..+|+|||+|||.+.++++|.+.|++.++ -|+++.+ .+++|||||+|.+...|..|- + +
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVte-----------GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~ 229 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTE-----------GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLM 229 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCC-----------CeeEEEEecCccccccccceEEEEeecchhHHHHHhhcc
Confidence 568899999999999999999999999975 2444433 457899999999999999998 4 4
Q ss_pred CC-ceecCceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC
Q 009052 313 DG-IIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP 391 (545)
Q Consensus 313 ~g-~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 391 (545)
++ +.|.|..+.|.|+......- .......+.|||+||+.++|+|.|+++|+.||.
T Consensus 230 ~g~~klwgn~~tVdWAep~~e~d------------------------ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ 285 (506)
T KOG0117|consen 230 PGKIKLWGNAITVDWAEPEEEPD------------------------EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGK 285 (506)
T ss_pred CCceeecCCcceeeccCcccCCC------------------------hhhhhheeeeeeeccchhhhHHHHHHHHHhccc
Confidence 54 56899999999987554211 011222357999999999999999999999999
Q ss_pred ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCC
Q 009052 392 LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQ 448 (545)
Q Consensus 392 i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 448 (545)
|+.|+.++| ||||+|.+.++|.+|++.|||..|.|..|.|.+|++....
T Consensus 286 veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 286 VERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 999998876 9999999999999999999999999999999999766543
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=5.4e-23 Score=210.61 Aligned_cols=165 Identities=24% Similarity=0.306 Sum_probs=131.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEE---EEecCCCcEEEEEecCHHHHHHHH-HcCC--ce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVN---VYINHEKKFAFVEMRSVEEASNAM-ALDG--II 316 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~---~~~~~~~g~afV~F~~~~~A~~a~-~l~g--~~ 316 (545)
...++|||+|||.++|+++|.+.|..++...- ..|+. ...++++|||||+|.+.++|..|+ .|+. ..
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv-------~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~ 208 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVV-------DVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQ 208 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCce-------EEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceE
Confidence 35789999999999999999999999864210 01111 012467899999999999999999 6643 46
Q ss_pred ecCceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhc--CCccE
Q 009052 317 FEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESF--GPLRG 394 (545)
Q Consensus 317 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~ 394 (545)
+.|+.|.|.|+....... .......++|||+||+..+++++|+++|+.| |.|+.
T Consensus 209 l~Gr~I~VdwA~p~~~~d------------------------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~r 264 (578)
T TIGR01648 209 LWGHVIAVDWAEPEEEVD------------------------EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVER 264 (578)
T ss_pred ecCceEEEEeeccccccc------------------------ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 889999999875432110 0011123589999999999999999999999 99999
Q ss_pred EEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCC
Q 009052 395 FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 446 (545)
Q Consensus 395 v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 446 (545)
|.++ ++||||+|.+.++|.+||+.|||..|.|+.|.|.|+.+..
T Consensus 265 V~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 265 VKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred EEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 9876 3599999999999999999999999999999999996653
No 31
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.90 E-value=3.1e-23 Score=202.45 Aligned_cols=141 Identities=22% Similarity=0.338 Sum_probs=119.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||.++++++|+++|+.||.|+.|.|+.++.++.++|||||+|.+.++|.+||+.|||..|.++.|+|.|+.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 34689999999999999999999999999999999998899999999999999999999999999999999999999985
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-----
Q 009052 444 QGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT----- 518 (545)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v----- 518 (545)
+... ......|+|.|+ +..+++ ++|+++|++||.|+.+
T Consensus 186 p~~~---------------------------~~~~~~lfV~nL--p~~vte--------e~L~~~F~~fG~V~~v~i~~d 228 (346)
T TIGR01659 186 PGGE---------------------------SIKDTNLYVTNL--PRTITD--------DQLDTIFGKYGQIVQKNILRD 228 (346)
T ss_pred cccc---------------------------ccccceeEEeCC--CCcccH--------HHHHHHHHhcCCEEEEEEeec
Confidence 4221 012335777777 444433 4899999999999887
Q ss_pred ----cCCceEEEEeCCCCCcCcccccc
Q 009052 519 ----FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 519 ----~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
..+|+|||+|.+.++|.+|+..+
T Consensus 229 ~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 229 KLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHh
Confidence 34689999999999998776544
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=1.2e-22 Score=202.43 Aligned_cols=257 Identities=16% Similarity=0.187 Sum_probs=181.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
......|+|+|||..+..++|..+|..||.| ..+.+......|+|+|.++.+|.+|+ .|....+...
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i------------~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~ 449 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEI------------GRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSA 449 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhccccc------------ceeecCcccceeeeeecCccchHHHHHHhchhhhccC
Confidence 3455789999999999999999999999974 33444444456999999999999999 8999999999
Q ss_pred eeEEeCCCCCCCC---ccccCC--CCCC---CC-----CcccccccCC---CCCC-----CCCCCCCeEEEcCCCCCCCH
Q 009052 321 PVKVRRPSDYNPS---LAATLG--PSQP---NP-----NLNLAAVGLT---PGSA-----GGLEGPDRIFVGGLPYYFTE 379 (545)
Q Consensus 321 ~l~v~~~~~~~~~---~~~~~~--~~~~---~~-----~~~~~~~~~~---~~~~-----~~~~~~~~l~v~nlp~~~~~ 379 (545)
++.+.|+....-. .+.... .... .+ ..+....... .+.+ ......++|||.||++.++.
T Consensus 450 plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~ 529 (725)
T KOG0110|consen 450 PLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTL 529 (725)
T ss_pred ccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccch
Confidence 9988776432211 000000 0000 00 0000000000 0000 11122234999999999999
Q ss_pred HHHHHHHHhcCCccEEEEeecCCC---CCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCChhhHHH
Q 009052 380 AQIRELLESFGPLRGFDLVKDRET---GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV 456 (545)
Q Consensus 380 ~~l~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~ 456 (545)
++|..+|..+|.|.+|.|...+.. -.+.|||||+|.++++|+.|+..|+|..|+|+.|.|.++..+......
T Consensus 530 e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g----- 604 (725)
T KOG0110|consen 530 EDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG----- 604 (725)
T ss_pred hHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc-----
Confidence 999999999999999998876421 235699999999999999999999999999999999999622111000
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee---------cCCceEEEE
Q 009052 457 LLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT---------FCYKESGLI 527 (545)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v---------~~~g~afV~ 527 (545)
.. ........-|.|.|+ .|+.+..+|+.+|..||.|..| .+.||+||.
T Consensus 605 ----------K~---~~~kk~~tKIlVRNi----------pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~ 661 (725)
T KOG0110|consen 605 ----------KK---KSKKKKGTKILVRNI----------PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVD 661 (725)
T ss_pred ----------cc---cccccccceeeeecc----------chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeee
Confidence 00 000111233445544 6777888999999999999999 568999999
Q ss_pred eCCCCCcCccc
Q 009052 528 YTDRRLHNPQF 538 (545)
Q Consensus 528 F~~~e~A~a~~ 538 (545)
|.++++|..||
T Consensus 662 f~t~~ea~nA~ 672 (725)
T KOG0110|consen 662 FLTPREAKNAF 672 (725)
T ss_pred ccCcHHHHHHH
Confidence 99999997777
No 33
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=4.1e-23 Score=184.23 Aligned_cols=148 Identities=24% Similarity=0.460 Sum_probs=131.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
-+|||+|||..+++.+|+.+|++||.|+.|- +. |.||||...+...|..|+ .|+|.+|.|..|.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECD------------Iv--KNYgFVHiEdktaaedairNLhgYtLhg~nInV 68 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECD------------IV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINV 68 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeee------------ee--cccceEEeecccccHHHHhhcccceecceEEEE
Confidence 3799999999999999999999999765543 32 679999999999999999 89999999999999
Q ss_pred eCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCC
Q 009052 325 RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG 404 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g 404 (545)
..++... ...++|+|+||.+.++.++|+..|++||.|.++.|+++
T Consensus 69 eaSksKs-------------------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd---- 113 (346)
T KOG0109|consen 69 EASKSKS-------------------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD---- 113 (346)
T ss_pred EeccccC-------------------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc----
Confidence 8755432 12358999999999999999999999999999999866
Q ss_pred CcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCC
Q 009052 405 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 446 (545)
Q Consensus 405 ~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 446 (545)
|+||.|.-.++|..|+..|+|.+|.|+.|+|+.+....
T Consensus 114 ----y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 114 ----YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ----eeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 99999999999999999999999999999999986553
No 34
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1e-20 Score=186.85 Aligned_cols=190 Identities=16% Similarity=0.225 Sum_probs=143.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
...++|||+|||..+++.++.+++..||.+..+. .+.+..++-++||||.+|.++..+..|+ .|||+.+++++
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~------lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFR------LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhhe------eecccccccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 4568999999999999999999999999999887 7888888999999999999999999999 89999999999
Q ss_pred eEEeCCCCCCCCccccCCCCCCCCCcccccccCCCC-CCCCCCCCCeEEEcCCC--CCCC--------HHHHHHHHHhcC
Q 009052 322 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPG-SAGGLEGPDRIFVGGLP--YYFT--------EAQIRELLESFG 390 (545)
Q Consensus 322 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~v~nlp--~~~~--------~~~l~~~f~~~G 390 (545)
|.|+.+............ . .+....+.... ......+...|++.|+- .++. -|+|+..|.+||
T Consensus 361 lvvq~A~~g~~~~~~~~~----~--~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g 434 (500)
T KOG0120|consen 361 LVVQRAIVGASNANVNFN----I--SQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG 434 (500)
T ss_pred eEeehhhccchhccccCC----c--cccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC
Confidence 999886543322111111 0 00001111111 12222333457777762 2211 157788889999
Q ss_pred CccEEEEeec-C--CCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 391 PLRGFDLVKD-R--ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 391 ~i~~v~i~~~-~--~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.|..|.|+.+ . ...-..|..||+|.+.++|++|+.+|+|.+|+|++|...|...
T Consensus 435 ~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 435 AVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred ceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 9999999877 2 1233568899999999999999999999999999999999743
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.84 E-value=6.5e-21 Score=195.50 Aligned_cols=149 Identities=20% Similarity=0.364 Sum_probs=119.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|+|.+...
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999987533
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee------
Q 009052 445 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------ 518 (545)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v------ 518 (545)
..... +.. .. ..........|++.|+ +.++.+ ++|+++|++||.|+.+
T Consensus 187 ~p~a~-~~~-~~--------------~~~~~~~~~rLfVgnL--p~~vte--------edLk~lFs~FG~I~svrl~~D~ 240 (612)
T TIGR01645 187 MPQAQ-PII-DM--------------VQEEAKKFNRIYVASV--HPDLSE--------TDIKSVFEAFGEIVKCQLARAP 240 (612)
T ss_pred ccccc-ccc-cc--------------ccccccccceEEeecC--CCCCCH--------HHHHHHHhhcCCeeEEEEEecC
Confidence 21100 000 00 0011123456888887 444444 3899999999999998
Q ss_pred ---cCCceEEEEeCCCCCcCcccc
Q 009052 519 ---FCYKESGLIYTDRRLHNPQFV 539 (545)
Q Consensus 519 ---~~~g~afV~F~~~e~A~a~~~ 539 (545)
..+||+||+|.+.++|..|+.
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHHH
Confidence 368999999999999966553
No 36
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.84 E-value=9.4e-21 Score=189.08 Aligned_cols=174 Identities=21% Similarity=0.363 Sum_probs=141.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEE----ecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY----INHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~----~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
++|||.||++++|.++|...|..+|.|+++. |.... ...|.|||||+|.++++|+.|+ .|+|+.|.|.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~-------I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH 588 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIE-------ISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH 588 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEE-------EeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc
Confidence 4499999999999999999999999876542 11111 1235699999999999999999 9999999999
Q ss_pred eeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeec
Q 009052 321 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 400 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 400 (545)
.|.|.++....... .+... ......++|+|+|||+..+..+|+++|..||.|.+|.|+..
T Consensus 589 ~l~lk~S~~k~~~~---~gK~~-----------------~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK 648 (725)
T KOG0110|consen 589 KLELKISENKPAST---VGKKK-----------------SKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK 648 (725)
T ss_pred eEEEEeccCccccc---ccccc-----------------ccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchh
Confidence 99999866111110 00000 00111358999999999999999999999999999999988
Q ss_pred CCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCC
Q 009052 401 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 446 (545)
Q Consensus 401 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 446 (545)
...+.++|||||+|-++.+|..|+.+|.+..|.|+.|.+.|+....
T Consensus 649 ~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 649 IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred hcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 5567789999999999999999999999999999999999996554
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.82 E-value=4.6e-19 Score=154.54 Aligned_cols=186 Identities=22% Similarity=0.323 Sum_probs=143.4
Q ss_pred ccceEEEcCCCCCCCHHHHHH----HHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 244 HARRVYVGGLPPTANEQSVAT----FFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~----~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
+..||||.||+..+..++|+. +|++||.|+ .|....+.+.+|.|||.|.+++.|..|+ .|+|+.+.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~il---------dI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy 78 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKIL---------DISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY 78 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeE---------EEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc
Confidence 455999999999999999888 999999865 3566678889999999999999999999 99999999
Q ss_pred CceeEEeCCCCCCCCccccCCCCCC---------------CCCccc-----ccccCCCCC-CCCCCCCCeEEEcCCCCCC
Q 009052 319 GAPVKVRRPSDYNPSLAATLGPSQP---------------NPNLNL-----AAVGLTPGS-AGGLEGPDRIFVGGLPYYF 377 (545)
Q Consensus 319 g~~l~v~~~~~~~~~~~~~~~~~~~---------------~~~~~~-----~~~~~~~~~-~~~~~~~~~l~v~nlp~~~ 377 (545)
|++++|.+++..........+.... ....+. ......+.. .....+...||+.|||..+
T Consensus 79 gK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es 158 (221)
T KOG4206|consen 79 GKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSES 158 (221)
T ss_pred CchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcch
Confidence 9999999988765433331110000 000000 000011111 1112334579999999999
Q ss_pred CHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccC-CeEEEEEEcC
Q 009052 378 TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG-DKTLTVRRAN 443 (545)
Q Consensus 378 ~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~-g~~l~v~~a~ 443 (545)
+.+.+..+|.+|.....|+++... .+.|||+|.+...|..|...|.|..+- ...|.|.++.
T Consensus 159 ~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 159 ESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999999998764 789999999999999999999999886 8889888874
No 38
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.2e-19 Score=159.96 Aligned_cols=81 Identities=26% Similarity=0.450 Sum_probs=77.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
|+|||..||.+..+.+|.++|-+||.|++.++..|+.|..+|.|+||.|+++.+|+.||.+|||+.|+-+.|+|....++
T Consensus 286 CNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 286 CNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred ceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred C
Q 009052 446 A 446 (545)
Q Consensus 446 ~ 446 (545)
.
T Consensus 366 d 366 (371)
T KOG0146|consen 366 D 366 (371)
T ss_pred c
Confidence 4
No 39
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.81 E-value=1.1e-18 Score=162.96 Aligned_cols=274 Identities=16% Similarity=0.151 Sum_probs=188.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcE-EEEEecCHHHHHHHH-HcCCceec-C-
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKF-AFVEMRSVEEASNAM-ALDGIIFE-G- 319 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~-afV~F~~~~~A~~a~-~l~g~~~~-g- 319 (545)
.--+++|.++-+.++-+-|..+|+.||.| ..-+.+.++.|| |+|+|.+++.|+.|. .|+|..|. |
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~V-----------lKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngc 217 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFV-----------LKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGC 217 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhccee-----------EEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCce
Confidence 44578999999999999999999999974 333345566665 999999999999999 99998764 3
Q ss_pred ceeEEeCCC----------CCCCCcc---ccCCCCCCC---------------CCcc-------cccccCCCCCCCCCCC
Q 009052 320 APVKVRRPS----------DYNPSLA---ATLGPSQPN---------------PNLN-------LAAVGLTPGSAGGLEG 364 (545)
Q Consensus 320 ~~l~v~~~~----------~~~~~~~---~~~~~~~~~---------------~~~~-------~~~~~~~~~~~~~~~~ 364 (545)
+.|+|.+.+ +...... ...+..++. +... ..+.... +.......
T Consensus 218 CtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~-~~~~~~~~ 296 (492)
T KOG1190|consen 218 CTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAAD-GKIESPSA 296 (492)
T ss_pred eEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccc-cccccCCC
Confidence 356665432 1111000 000100000 0000 0000000 00111112
Q ss_pred CCeEEEcCC-CCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 365 PDRIFVGGL-PYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 365 ~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
...|.|.|| +..+|.+.|..+|.-||.|..|.|+..+ +.-|+|+|.+...|+.|+..|+|..|.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 356888888 5569999999999999999999999885 4579999999999999999999999999999999998
Q ss_pred CCCCCCCh--hhHHHHHHHHHHHHHHHhhcC------CCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCc
Q 009052 444 QGANQPKP--EQESVLLHAQQQIALQRLMLQ------PGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFC 515 (545)
Q Consensus 444 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V 515 (545)
....+... +..+.+........+..+..+ ....|+..+.|+|+ +....+ |+|++.|..-|.+
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsni--p~svse--------e~lk~~f~~~g~~ 441 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNI--PPSVSE--------EDLKNLFQEPGGQ 441 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccC--Ccccch--------hHHHHhhhcCCce
Confidence 77655432 112222222222333333211 13467888899988 444443 4999999999988
Q ss_pred eee-----cCCceEEEEeCCCCCcCccccccccc
Q 009052 516 SPT-----FCYKESGLIYTDRRLHNPQFVYFYIH 544 (545)
Q Consensus 516 ~~v-----~~~g~afV~F~~~e~A~a~~~~~~~~ 544 (545)
++. .....|++++.++|+|.-+++..+.|
T Consensus 442 vkafkff~kd~kmal~q~~sveeA~~ali~~hnh 475 (492)
T KOG1190|consen 442 VKAFKFFQKDRKMALPQLESVEEAIQALIDLHNH 475 (492)
T ss_pred EEeeeecCCCcceeecccCChhHhhhhccccccc
Confidence 877 56688999999999999998888777
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1.8e-19 Score=169.38 Aligned_cols=137 Identities=23% Similarity=0.331 Sum_probs=109.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCc-cC--CeEEEEEEc
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIK-MG--DKTLTVRRA 442 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~-~~--g~~l~v~~a 442 (545)
-+|||+-||..++|.||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+.+||+.+ |- ...|.|.|+
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 479999999999999999999999999999999999999999999999999999999999998765 43 367888888
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee----
Q 009052 443 NQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT---- 518 (545)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v---- 518 (545)
....... ......+|-.|..- .++.+|+++|++||.|.+|
T Consensus 115 d~E~er~-----------------------~~e~KLFvg~lsK~-------------~te~evr~iFs~fG~Ied~~ilr 158 (510)
T KOG0144|consen 115 DGERERI-----------------------VEERKLFVGMLSKQ-------------CTENEVREIFSRFGHIEDCYILR 158 (510)
T ss_pred chhhhcc-----------------------ccchhhhhhhcccc-------------ccHHHHHHHHHhhCccchhhhee
Confidence 4332110 00112222233222 2234899999999999999
Q ss_pred ----cCCceEEEEeCCCCCcCccc
Q 009052 519 ----FCYKESGLIYTDRRLHNPQF 538 (545)
Q Consensus 519 ----~~~g~afV~F~~~e~A~a~~ 538 (545)
.++|||||+|.+.+.|.+|.
T Consensus 159 d~~~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 159 DPDGLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred cccccccceeEEEEehHHHHHHHH
Confidence 78999999999999996554
No 41
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.79 E-value=1.2e-19 Score=171.35 Aligned_cols=174 Identities=21% Similarity=0.352 Sum_probs=149.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCceeE
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 323 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l~ 323 (545)
..++|||++|+++++++.|+++|.+||+|..|. ++.+..+++++||+||+|.+++....+|....+.|.|+.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~------vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCV------VMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVE 78 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEE------EeccCCCCCcccccceecCCCcchheeecccccccCCcccc
Confidence 678999999999999999999999999998876 56666778899999999999999999997778889999998
Q ss_pred EeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCC
Q 009052 324 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 403 (545)
Q Consensus 324 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~ 403 (545)
+..+.......... ......+|||++||..++++++++.|++||.|..+.++.+..+
T Consensus 79 ~k~av~r~~~~~~~-----------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~ 135 (311)
T KOG4205|consen 79 PKRAVSREDQTKVG-----------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT 135 (311)
T ss_pred ceeccCcccccccc-----------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc
Confidence 87765433211100 0012358999999999999999999999999999999999999
Q ss_pred CCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCC
Q 009052 404 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 447 (545)
Q Consensus 404 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 447 (545)
..++||+||.|.+.+.+.+++ .+.-+.|+|+.|.|..|.++..
T Consensus 136 ~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 136 SRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred cccccceeeEeccccccceec-ccceeeecCceeeEeeccchhh
Confidence 999999999999999998887 6678899999999999976654
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=5.5e-18 Score=141.41 Aligned_cols=178 Identities=22% Similarity=0.311 Sum_probs=129.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCC---CcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE---KKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~---~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
...++|||+|||.++-+.+|.++|.+||.| ..|.+... ..||||+|.++.+|+.|+ ..+|..+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i------------~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRI------------REIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcce------------EEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC
Confidence 457899999999999999999999999974 44444332 579999999999999999 89999999
Q ss_pred CceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEe
Q 009052 319 GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 398 (545)
Q Consensus 319 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~ 398 (545)
|..|.|.++...-......-.-...... ..-...............|+|.+||+.-+++||++.+.+.|.|....+.
T Consensus 72 g~rLRVEfprggr~s~~~~G~y~gggrg---Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~ 148 (241)
T KOG0105|consen 72 GCRLRVEFPRGGRSSSDRRGSYSGGGRG---GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ 148 (241)
T ss_pred cceEEEEeccCCCcccccccccCCCCCC---CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee
Confidence 9999999987654211110000000000 0000000000111122479999999999999999999999999999888
Q ss_pred ecCCCCCcceEEEEEecChHHHHHHHHHhCCCcc--CCeEEEEEEc
Q 009052 399 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM--GDKTLTVRRA 442 (545)
Q Consensus 399 ~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~--~g~~l~v~~a 442 (545)
++ |++.|+|...|+.+.|+..|....+ .|.+..+..-
T Consensus 149 rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 149 RD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred cc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 76 4889999999999999999987665 4544444443
No 43
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.5e-18 Score=159.59 Aligned_cols=143 Identities=21% Similarity=0.395 Sum_probs=111.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+.|.+.+.|+.|+..|.+||.|++|.+.+|+.|+.++|||||+|+-+|.|+.|++.|||..++|+.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999864221
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-------
Q 009052 446 ANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------- 518 (545)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v------- 518 (545)
++.......-++.. .+ -...+|..++. +|.++ ||+.+|+.||+|++|
T Consensus 194 -----pQAQpiID~vqeeA--k~------fnRiYVaSvHp-----DLSe~--------DiKSVFEAFG~I~~C~LAr~pt 247 (544)
T KOG0124|consen 194 -----PQAQPIIDMVQEEA--KK------FNRIYVASVHP-----DLSET--------DIKSVFEAFGEIVKCQLARAPT 247 (544)
T ss_pred -----cccchHHHHHHHHH--Hh------hheEEeeecCC-----CccHH--------HHHHHHHhhcceeeEEeeccCC
Confidence 11111211111111 11 11233333332 33332 999999999999999
Q ss_pred --cCCceEEEEeCCCCCc
Q 009052 519 --FCYKESGLIYTDRRLH 534 (545)
Q Consensus 519 --~~~g~afV~F~~~e~A 534 (545)
..+|++||+|.+.++-
T Consensus 248 ~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 248 GRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred CCCccceeeEEeccccch
Confidence 6789999999998765
No 44
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.73 E-value=1e-17 Score=140.03 Aligned_cols=136 Identities=19% Similarity=0.248 Sum_probs=111.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
..+|||+||+..++++.|.++|-+.|.|+.+.|+++..++..+|||||+|.++|+|..|++.||...|.|++|+|..+..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999851
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee------
Q 009052 445 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------ 518 (545)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v------ 518 (545)
... ...-..-+++.|+- + ++ |+ .-|...|+.||.+...
T Consensus 89 ~~~--------------------------nl~vganlfvgNLd-~-~v-De-------~~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 89 HQK--------------------------NLDVGANLFVGNLD-P-EV-DE-------KLLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred ccc--------------------------cccccccccccccC-c-ch-hH-------HHHHHHHHhccccccCCccccc
Confidence 110 00111345566662 2 22 22 2678899999999985
Q ss_pred ----cCCceEEEEeCCCCCcCc
Q 009052 519 ----FCYKESGLIYTDRRLHNP 536 (545)
Q Consensus 519 ----~~~g~afV~F~~~e~A~a 536 (545)
.+.|++||.|.+.+.+.+
T Consensus 133 ~~tg~~~~~g~i~~~sfeasd~ 154 (203)
T KOG0131|consen 133 PDTGNPKGFGFINYASFEASDA 154 (203)
T ss_pred ccCCCCCCCeEEechhHHHHHH
Confidence 678899999999888744
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=1.6e-16 Score=135.54 Aligned_cols=84 Identities=26% Similarity=0.565 Sum_probs=79.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|+|.|+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 34689999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
....
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6543
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.70 E-value=6.6e-17 Score=151.23 Aligned_cols=269 Identities=16% Similarity=0.170 Sum_probs=168.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCC--ceec
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDG--IIFE 318 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g--~~~~ 318 (545)
..+++.|.++|||++++|++|.+++.+||. |..+...+.+..|||+|.+.++|...+ .... -.+.
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~------------vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr 92 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGK------------VTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLR 92 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccc------------eeeeeeeccchhhhhhhcchhhhhheeecccccCcccc
Confidence 346788999999999999999999999995 667777777889999999999999966 3333 3478
Q ss_pred CceeEEeCCCCCC------CCccccCC-----CCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHH
Q 009052 319 GAPVKVRRPSDYN------PSLAATLG-----PSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLE 387 (545)
Q Consensus 319 g~~l~v~~~~~~~------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 387 (545)
|++|.|++..... +....... .................+.......--.++|.|+-+.++-+-|..+|+
T Consensus 93 ~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS 172 (492)
T KOG1190|consen 93 GQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFS 172 (492)
T ss_pred CcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHh
Confidence 8999998753211 10000000 000000111111111222222222233688999999999999999999
Q ss_pred hcCCccEEEEeecCCCCCcceE-EEEEecChHHHHHHHHHhCCCccC--CeEEEEEEcCCCCC----------------C
Q 009052 388 SFGPLRGFDLVKDRETGNSKGY-AFCVYQDLSVTDIACAALNGIKMG--DKTLTVRRANQGAN----------------Q 448 (545)
Q Consensus 388 ~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~e~A~~A~~~l~g~~~~--g~~l~v~~a~~~~~----------------~ 448 (545)
+||.|..|.-... +.|| |+|+|.+.+.|+.|..+|+|+.|. -++|+|.|++-... .
T Consensus 173 ~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~L 247 (492)
T KOG1190|consen 173 KFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDL 247 (492)
T ss_pred hcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCC
Confidence 9999988765433 1344 999999999999999999999873 36778877633221 1
Q ss_pred CChhhHH----HHHHHHH--------------HHHHHHhhcCCCCCC--ceeEEecCCCCcccCCChHHHHHHHHHHHHH
Q 009052 449 PKPEQES----VLLHAQQ--------------QIALQRLMLQPGSVP--SKVVCLTQVVSADELKDDEEYEEILEDMRQE 508 (545)
Q Consensus 449 ~~~~~~~----~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~ 508 (545)
|..+-.. .+..+.. ..............+ ..++.++|+ .++.++ .+.|..+
T Consensus 248 P~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl-n~~~VT--------~d~Lftl 318 (492)
T KOG1190|consen 248 PVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL-NEEAVT--------PDVLFTL 318 (492)
T ss_pred CCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC-chhccc--------hhHHHHH
Confidence 1110000 0000000 000000000000111 356666666 333333 3489999
Q ss_pred HhccCCceee----cCCceEEEEeCCCCCcCc
Q 009052 509 GGKFAFCSPT----FCYKESGLIYTDRRLHNP 536 (545)
Q Consensus 509 f~~fG~V~~v----~~~g~afV~F~~~e~A~a 536 (545)
|+-||.|..| ..+..|+|+|.+...|.-
T Consensus 319 FgvYGdVqRVkil~nkkd~ALIQmsd~~qAqL 350 (492)
T KOG1190|consen 319 FGVYGDVQRVKILYNKKDNALIQMSDGQQAQL 350 (492)
T ss_pred HhhhcceEEEEeeecCCcceeeeecchhHHHH
Confidence 9999999999 556889999999998843
No 47
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.66 E-value=3.1e-16 Score=140.50 Aligned_cols=124 Identities=19% Similarity=0.314 Sum_probs=106.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
.+|||+|||..+++.+|+.+|++||+|++|.|+++ ||||..++...|..||..|||..|.|..|.|.-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 37999999999999999999999999999999976 9999999999999999999999999999999988655
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-cCCceE
Q 009052 446 ANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-FCYKES 524 (545)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v-~~~g~a 524 (545)
. .++..+.+.|+. +. .+. .+|++.|++||.|+.+ .-++++
T Consensus 75 s-----------------------------k~stkl~vgNis-~t-ctn--------~ElRa~fe~ygpviecdivkdy~ 115 (346)
T KOG0109|consen 75 S-----------------------------KASTKLHVGNIS-PT-CTN--------QELRAKFEKYGPVIECDIVKDYA 115 (346)
T ss_pred C-----------------------------CCccccccCCCC-cc-ccC--------HHHhhhhcccCCceeeeeeccee
Confidence 2 244556666662 11 122 2899999999999999 788999
Q ss_pred EEEeCCCCCcCc
Q 009052 525 GLIYTDRRLHNP 536 (545)
Q Consensus 525 fV~F~~~e~A~a 536 (545)
||.|.-.++|..
T Consensus 116 fvh~d~~eda~~ 127 (346)
T KOG0109|consen 116 FVHFDRAEDAVE 127 (346)
T ss_pred EEEEeeccchHH
Confidence 999999999943
No 48
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.65 E-value=1.8e-15 Score=139.01 Aligned_cols=170 Identities=18% Similarity=0.310 Sum_probs=130.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccE--------EEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEE
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRG--------FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 437 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l 437 (545)
+.|||.|||.++|.+++.++|++||.|.. |.|..+. .|..+|-|+|.|-..|+...|+..|++..|.|+.|
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 46999999999999999999999998754 7788884 69999999999999999999999999999999999
Q ss_pred EEEEcCCCCCC---CChhhH-HHHHHHHHHHHHHHhh-------cCCCCCCceeEEecCCCCcccCCCh-HHHHHHHHHH
Q 009052 438 TVRRANQGANQ---PKPEQE-SVLLHAQQQIALQRLM-------LQPGSVPSKVVCLTQVVSADELKDD-EEYEEILEDM 505 (545)
Q Consensus 438 ~v~~a~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~n~~~~~~l~~~-~~~~~~~~~l 505 (545)
+|..|.-.... +..... ........+...+++. .........+|.|.|+|++..+..+ +...++.++|
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl 293 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDL 293 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHH
Confidence 99988433211 111100 0000011111111111 0112345678999999999998776 7788999999
Q ss_pred HHHHhccCCceee-----cCCceEEEEeCCCCCcCc
Q 009052 506 RQEGGKFAFCSPT-----FCYKESGLIYTDRRLHNP 536 (545)
Q Consensus 506 ~~~f~~fG~V~~v-----~~~g~afV~F~~~e~A~a 536 (545)
.+.|++||.|.+| ++.|.+-|.|.+.++|.+
T Consensus 294 ~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ 329 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQ 329 (382)
T ss_pred HHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHH
Confidence 9999999999999 889999999999999944
No 49
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.65 E-value=1.9e-15 Score=145.48 Aligned_cols=169 Identities=22% Similarity=0.282 Sum_probs=129.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCceeEE
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKV 324 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l~v 324 (545)
..-|-+++||+.+|++||.+||+.++- .. .++....++..|-|||+|.+.+++++||+++...+..+-|.|
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~I-~~--------~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEV 80 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCGI-EN--------LEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEV 80 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCce-eE--------EEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEE
Confidence 456889999999999999999999852 11 344445578899999999999999999999999999999999
Q ss_pred eCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccE-EEEeecCCC
Q 009052 325 RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRG-FDLVKDRET 403 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-v~i~~~~~~ 403 (545)
-.+........... ...........|-|++||+.|+++||.++|+..-.|.. |.++.+ ..
T Consensus 81 f~~~~~e~d~~~~~------------------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~r 141 (510)
T KOG4211|consen 81 FTAGGAEADWVMRP------------------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QR 141 (510)
T ss_pred EccCCccccccccC------------------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CC
Confidence 76543332111100 00011122347999999999999999999998766655 445555 46
Q ss_pred CCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 404 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 404 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
+.+.|-|||+|++.+.|++||.. |...|+-+-|.|-.+
T Consensus 142 gR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 77899999999999999999944 777888888888765
No 50
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.63 E-value=6e-15 Score=135.70 Aligned_cols=198 Identities=16% Similarity=0.175 Sum_probs=136.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEE---EecCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNV---YINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~---~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
..+..|||.|||.++|-+++.++|+.||-|..- +..+.+-+.+ .-|.-+|=|+|.|.-.++...|+ -|++..|.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d--~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRD--PQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEecc--CCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 345679999999999999999999999976432 1112222222 23555899999999999999999 89999999
Q ss_pred CceeEEeCCCCCCCCccccCCC----CCCCCCcc---cccccCCCC--CCCCCCCCCeEEEcCCCCC----CC-------
Q 009052 319 GAPVKVRRPSDYNPSLAATLGP----SQPNPNLN---LAAVGLTPG--SAGGLEGPDRIFVGGLPYY----FT------- 378 (545)
Q Consensus 319 g~~l~v~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~--~~~~~~~~~~l~v~nlp~~----~~------- 378 (545)
|+.|+|..++-.....-..... ......+. ....+-.+. ........++|.|.||=.. .+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999998875432111000000 00000000 000000111 1222334568999998221 22
Q ss_pred HHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCC
Q 009052 379 EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 446 (545)
Q Consensus 379 ~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 446 (545)
.++|.+.|++||.|..|.|.-. .+.|.+.|.|.+.++|..||+.|+|++|+|+.|.........
T Consensus 290 kedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 4788899999999999988633 348899999999999999999999999999999998874443
No 51
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=6.5e-16 Score=136.70 Aligned_cols=166 Identities=20% Similarity=0.310 Sum_probs=127.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
..|||++||+.+.+.+|..||..||.|..+ .+ -.||+||+|.+..+|..|+ .+++..|+|-.+.|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~------------~m--k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vv 67 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDA------------DM--KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVV 67 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccc------------ee--ecccceeccCchhhhhcccchhcCceecceeeee
Confidence 469999999999999999999999976432 22 2678899999999999999 99999999999888
Q ss_pred eCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCC
Q 009052 325 RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG 404 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g 404 (545)
.++........ ......... ............+.|+|.++...+.+.+|.+.|.++|.+....+
T Consensus 68 e~~r~~~~~~g----~~~~g~r~~-----~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------- 131 (216)
T KOG0106|consen 68 EHARGKRRGRG----RPRGGDRRS-----DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------- 131 (216)
T ss_pred ecccccccccC----CCCCCCccc-----hhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------
Confidence 88775432220 000000000 00001111233457999999999999999999999999955544
Q ss_pred CcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 405 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 405 ~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
..+++||+|.+.++|..|+..|+|..+.++.|.+.+.
T Consensus 132 -~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 132 -RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred -hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 2568999999999999999999999999999999443
No 52
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.61 E-value=1e-14 Score=125.86 Aligned_cols=179 Identities=20% Similarity=0.340 Sum_probs=119.6
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecC----CCcEEEEEecCHHHHHHHH-HcCCc
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH----EKKFAFVEMRSVEEASNAM-ALDGI 315 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~----~~g~afV~F~~~~~A~~a~-~l~g~ 315 (545)
....-+||||.|||.++..-+|+.+|..|--..++ .+. .+.+ .+-+|||.|.+...|..|+ +|||.
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgs--------lLK-~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGv 100 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGS--------LLK-YTSKGDQVCKPVAFATFTSHQFALAAMNALNGV 100 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccce--------eee-eccCCCccccceEEEEecchHHHHHHHHHhcCe
Confidence 34457899999999999999999999998432221 111 1222 2479999999999999999 99999
Q ss_pred eec---CceeEEeCCCCCCCCccccCCC-CCCCCCc-------------------------cccc---------------
Q 009052 316 IFE---GAPVKVRRPSDYNPSLAATLGP-SQPNPNL-------------------------NLAA--------------- 351 (545)
Q Consensus 316 ~~~---g~~l~v~~~~~~~~~~~~~~~~-~~~~~~~-------------------------~~~~--------------- 351 (545)
.|. +..|+|..++............ ....+.+ .+..
T Consensus 101 rFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~ 180 (284)
T KOG1457|consen 101 RFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKS 180 (284)
T ss_pred eeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccch
Confidence 985 6788887665332111000000 0000000 0000
Q ss_pred -------ccCCC---------CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEec
Q 009052 352 -------VGLTP---------GSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQ 415 (545)
Q Consensus 352 -------~~~~~---------~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 415 (545)
....+ ........+.+|||.||..+++|++|+.+|+.|....-++|... .| ...|||+|+
T Consensus 181 ~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~ 256 (284)
T KOG1457|consen 181 EALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFE 256 (284)
T ss_pred hhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHH
Confidence 00000 00112223357999999999999999999999988766666432 23 458999999
Q ss_pred ChHHHHHHHHHhCCCcc
Q 009052 416 DLSVTDIACAALNGIKM 432 (545)
Q Consensus 416 ~~e~A~~A~~~l~g~~~ 432 (545)
..+.|..|+..|.|..|
T Consensus 257 ~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 257 EIEQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHHHHHhhccee
Confidence 99999999999999876
No 53
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.61 E-value=1.5e-15 Score=129.52 Aligned_cols=87 Identities=18% Similarity=0.377 Sum_probs=75.6
Q ss_pred hhhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCcee
Q 009052 239 QQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF 317 (545)
Q Consensus 239 ~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~ 317 (545)
.......++|||+|||+.+|+++|+++|.+||.|..+. ++.+..++.++|||||+|.+.++|+.|| .||+..|
T Consensus 28 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i 101 (144)
T PLN03134 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAK------VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL 101 (144)
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34455678999999999999999999999999987665 4555567889999999999999999999 8999999
Q ss_pred cCceeEEeCCCCCC
Q 009052 318 EGAPVKVRRPSDYN 331 (545)
Q Consensus 318 ~g~~l~v~~~~~~~ 331 (545)
.|+.|+|.++....
T Consensus 102 ~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 102 NGRHIRVNPANDRP 115 (144)
T ss_pred CCEEEEEEeCCcCC
Confidence 99999999876543
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.56 E-value=1.9e-14 Score=107.80 Aligned_cols=70 Identities=30% Similarity=0.653 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEE
Q 009052 368 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 438 (545)
Q Consensus 368 l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~ 438 (545)
|||+|||..+++++|+++|+.||.|..+.+..+ .++..+|+|||+|.+.++|.+|++.|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 6788999999999999999999999999999999885
No 55
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.54 E-value=1.1e-13 Score=130.76 Aligned_cols=191 Identities=19% Similarity=0.248 Sum_probs=134.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHH-HHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQV-MAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~-G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
...+.+||.|||+++..++|+++|... |+|.-+. +.....++.+|||.|+|+++|.+++|+ .||...+.|+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yve-------Ll~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR 114 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVE-------LLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGR 114 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeee-------eecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCc
Confidence 345669999999999999999999865 3332211 222345788999999999999999999 8999999999
Q ss_pred eeEEeCCCCCCCCcccc----------------C-----------------CCCCCCC-C------c-----------cc
Q 009052 321 PVKVRRPSDYNPSLAAT----------------L-----------------GPSQPNP-N------L-----------NL 349 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~----------------~-----------------~~~~~~~-~------~-----------~~ 349 (545)
+|.|+...+.+...-.. . +...... . . +.
T Consensus 115 ~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~ 194 (608)
T KOG4212|consen 115 ELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNY 194 (608)
T ss_pred eEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhh
Confidence 99996544321110000 0 0000000 0 0 00
Q ss_pred ccccCC-----CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHH
Q 009052 350 AAVGLT-----PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 424 (545)
Q Consensus 350 ~~~~~~-----~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~ 424 (545)
...+.. +-..-.+....++||.||.+.+....|++.|.-.|+|+.|.+-.++ -|.++|+|.++|..+-+|..||
T Consensus 195 ~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaI 273 (608)
T KOG4212|consen 195 NLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAI 273 (608)
T ss_pred hcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHH
Confidence 000000 0000011223479999999999999999999999999999999986 5688999999999999999999
Q ss_pred HHhCCCccCCeEEEEEE
Q 009052 425 AALNGIKMGDKTLTVRR 441 (545)
Q Consensus 425 ~~l~g~~~~g~~l~v~~ 441 (545)
..|++.-+..+...+..
T Consensus 274 sml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 274 SMLDRQGLFDRRMTVRL 290 (608)
T ss_pred HhhccCCCccccceeec
Confidence 99998777777777666
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=5.5e-14 Score=123.42 Aligned_cols=82 Identities=30% Similarity=0.466 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|-|.||+.++++++|.++|.+||.|..|.|.+++.||.++|||||.|.+.++|++||..|||.-+..-.|.|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CC
Q 009052 444 QG 445 (545)
Q Consensus 444 ~~ 445 (545)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 54
No 57
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.51 E-value=3.6e-14 Score=121.04 Aligned_cols=86 Identities=27% Similarity=0.464 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 362 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 362 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
.++...|.|-||-+-++.++|..+|++||.|.+|.|+.++.|+.++|||||.|....+|+.|+++|+|..|+|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 009052 442 ANQGAN 447 (545)
Q Consensus 442 a~~~~~ 447 (545)
|.-...
T Consensus 90 arygr~ 95 (256)
T KOG4207|consen 90 ARYGRP 95 (256)
T ss_pred hhcCCC
Confidence 865543
No 58
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.7e-13 Score=125.24 Aligned_cols=86 Identities=26% Similarity=0.556 Sum_probs=77.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEE
Q 009052 359 AGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 438 (545)
Q Consensus 359 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~ 438 (545)
+.....+++|+|.|||+..-+-||+.+|++||+|.+|.|+.+ +.| +||||||+|++.+||.+|.++|||..+.||+|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-ERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-ERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec-cCC-CCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 344456689999999999999999999999999999999988 344 599999999999999999999999999999999
Q ss_pred EEEcCCCC
Q 009052 439 VRRANQGA 446 (545)
Q Consensus 439 v~~a~~~~ 446 (545)
|..+....
T Consensus 168 Vn~ATarV 175 (376)
T KOG0125|consen 168 VNNATARV 175 (376)
T ss_pred Eeccchhh
Confidence 99985543
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=1.5e-13 Score=102.86 Aligned_cols=70 Identities=29% Similarity=0.614 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEE
Q 009052 368 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 438 (545)
Q Consensus 368 l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~ 438 (545)
|+|+|||..+++++|.++|+.||.|..+.+..++. +..+|+|||+|.+.++|..|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 89999999999999999999999999999999884
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.48 E-value=2.3e-13 Score=119.13 Aligned_cols=162 Identities=16% Similarity=0.233 Sum_probs=112.9
Q ss_pred CeEEEcCCCCCCCHHHHHH----HHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 366 DRIFVGGLPYYFTEAQIRE----LLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~----~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
.+|||.||+..+..++|+. +|+.||.|..|...+. ...+|-|||.|.+.+.|..|+.+|+|+.|.|+.++|+|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3899999999999998887 9999999999988754 56789999999999999999999999999999999999
Q ss_pred cCCCCCCCChhh---HHH--------HH----HHHHHHH---HHHhh-c----CCCCCCceeEEecCCCCcccCCChHHH
Q 009052 442 ANQGANQPKPEQ---ESV--------LL----HAQQQIA---LQRLM-L----QPGSVPSKVVCLTQVVSADELKDDEEY 498 (545)
Q Consensus 442 a~~~~~~~~~~~---~~~--------~~----~~~~~~~---~~~~~-~----~~~~~~~~~~~l~n~~~~~~l~~~~~~ 498 (545)
|+.+...-.... ... +. ....+.. ++... . .....+..++++.|+. .+..
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP--~es~----- 159 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIP--SESE----- 159 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCC--cchh-----
Confidence 977763222100 000 00 0000000 00000 0 1225677788888873 3221
Q ss_pred HHHHHHHHHHHhccCCceee-cCCceEEEEeCCCCCcCcc
Q 009052 499 EEILEDMRQEGGKFAFCSPT-FCYKESGLIYTDRRLHNPQ 537 (545)
Q Consensus 499 ~~~~~~l~~~f~~fG~V~~v-~~~g~afV~F~~~e~A~a~ 537 (545)
.+++++|-+-|..|..|..| .-.+.|||+|.+...|.++
T Consensus 160 ~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a 199 (221)
T KOG4206|consen 160 SEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAA 199 (221)
T ss_pred HHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHH
Confidence 23445666666677777777 5789999999998776443
No 61
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2.2e-13 Score=122.95 Aligned_cols=83 Identities=31% Similarity=0.550 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
.+.++|||.-|++.++|.+|+..|+.||.|+.|.|+.++.||.++|||||+|.++-+...|.+..+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCC
Q 009052 443 NQG 445 (545)
Q Consensus 443 ~~~ 445 (545)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 433
No 62
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.6e-13 Score=107.87 Aligned_cols=78 Identities=26% Similarity=0.444 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
+++|||+||...++|++|.++|+++|.|..|.+-.++.+..+-|||||+|.+.++|..|+..++|..|..++|.|.|.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 469999999999999999999999999999999988888888999999999999999999999999999999999996
No 63
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.46 E-value=2.2e-13 Score=126.68 Aligned_cols=261 Identities=19% Similarity=0.167 Sum_probs=166.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCcee
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l 322 (545)
..+..|-.++||+..++.+|..||...-.. ..+..+....-+...|.|.|.|.++|.-..|++.+...++++.|
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia------~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryi 131 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIA------NGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYI 131 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhcc------ccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCce
Confidence 344567789999999999999999866322 11223444445677899999999999999999889999999999
Q ss_pred EEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhc----CCccEEEEe
Q 009052 323 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESF----GPLRGFDLV 398 (545)
Q Consensus 323 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~ 398 (545)
.|-.+....--.-.........+ ....+..-.|-+++||+++++.+|.++|.+. |..+.|.++
T Consensus 132 evYka~ge~f~~iagg~s~e~~~-------------flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV 198 (508)
T KOG1365|consen 132 EVYKATGEEFLKIAGGTSNEAAP-------------FLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV 198 (508)
T ss_pred eeeccCchhheEecCCccccCCC-------------CCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE
Confidence 99765433211000000000000 0000111258899999999999999999742 245566666
Q ss_pred ecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcC------
Q 009052 399 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQ------ 472 (545)
Q Consensus 399 ~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 472 (545)
..+ +|...|-|||.|..+++|+.||.. |...++-+.|.+-.+... +..+.+...... .+...
T Consensus 199 ~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaa------Evqqvlnr~~s~----pLi~~~~sp~~ 266 (508)
T KOG1365|consen 199 TRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAA------EVQQVLNREVSE----PLIPGLTSPLL 266 (508)
T ss_pred ECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHH------HHHHHHHhhccc----cccCCCCCCCC
Confidence 653 789999999999999999999954 555666665555433110 111111110000 00100
Q ss_pred --------CCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-----------cCCceEEEEeCCCCC
Q 009052 473 --------PGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-----------FCYKESGLIYTDRRL 533 (545)
Q Consensus 473 --------~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v-----------~~~g~afV~F~~~e~ 533 (545)
+...+..|+-|..+ .|+.+.|+|..+|..|-.-+.. ...|.|||+|.++|.
T Consensus 267 p~~p~~~~p~~~~kdcvRLRGL----------Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~ 336 (508)
T KOG1365|consen 267 PGGPARLVPPTRSKDCVRLRGL----------PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAER 336 (508)
T ss_pred CCCccccCCCCCCCCeeEecCC----------ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHH
Confidence 01112344444443 6888888999998877665444 567899999999999
Q ss_pred cCccccccccc
Q 009052 534 HNPQFVYFYIH 544 (545)
Q Consensus 534 A~a~~~~~~~~ 544 (545)
|.++-.-++.|
T Consensus 337 a~aaaqk~hk~ 347 (508)
T KOG1365|consen 337 ARAAAQKCHKK 347 (508)
T ss_pred HHHHHHHHHHh
Confidence 96665544433
No 64
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.4e-14 Score=121.12 Aligned_cols=81 Identities=37% Similarity=0.677 Sum_probs=76.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
.-|||+|||+.+||.||..+|++||.|+.|.+++|+.||.++||||+.|++.-+...|+..|||..|.|++|+|......
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999987444
Q ss_pred C
Q 009052 446 A 446 (545)
Q Consensus 446 ~ 446 (545)
.
T Consensus 116 k 116 (219)
T KOG0126|consen 116 K 116 (219)
T ss_pred c
Confidence 3
No 65
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.3e-13 Score=113.39 Aligned_cols=77 Identities=21% Similarity=0.413 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||+||+..+++.+|..+|..||.|..|.|...+ .|||||+|+++-+|..|+..|+|..|+|..|.|.++.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 3689999999999999999999999999999998875 89999999999999999999999999999999999865
Q ss_pred CC
Q 009052 445 GA 446 (545)
Q Consensus 445 ~~ 446 (545)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 54
No 66
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.6e-13 Score=108.76 Aligned_cols=81 Identities=31% Similarity=0.437 Sum_probs=77.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
..|||.++-...++++|.+.|..||.|+.|.+-.+.-||..+|||+|+|++.++|++|+.+|||..|-|+.|.|.||-.+
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 37999999999999999999999999999999999899999999999999999999999999999999999999999555
Q ss_pred C
Q 009052 446 A 446 (545)
Q Consensus 446 ~ 446 (545)
.
T Consensus 153 g 153 (170)
T KOG0130|consen 153 G 153 (170)
T ss_pred C
Confidence 4
No 67
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.44 E-value=2.6e-13 Score=128.51 Aligned_cols=144 Identities=18% Similarity=0.312 Sum_probs=118.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||++|++.++++.|++.|.+||.|..|.+++++.++.++||+||+|++.+....+| ...-+.|.|+.|.+..|.+
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceeccC
Confidence 468999999999999999999999999999999999999999999999999999988887 3356789999999999866
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee------
Q 009052 445 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------ 518 (545)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v------ 518 (545)
...+..... ...++.+++..+ +..+.+ ++++++|++||.|..+
T Consensus 85 r~~~~~~~~---------------------~~~tkkiFvGG~--~~~~~e--------~~~r~yfe~~g~v~~~~~~~d~ 133 (311)
T KOG4205|consen 85 REDQTKVGR---------------------HLRTKKIFVGGL--PPDTTE--------EDFKDYFEQFGKVADVVIMYDK 133 (311)
T ss_pred ccccccccc---------------------ccceeEEEecCc--CCCCch--------HHHhhhhhccceeEeeEEeecc
Confidence 655433222 125667777755 333333 3899999999988888
Q ss_pred ---cCCceEEEEeCCCCCcCccccc
Q 009052 519 ---FCYKESGLIYTDRRLHNPQFVY 540 (545)
Q Consensus 519 ---~~~g~afV~F~~~e~A~a~~~~ 540 (545)
..+||+||.|.+.++..+.+..
T Consensus 134 ~~~~~rgFgfv~~~~e~sVdkv~~~ 158 (311)
T KOG4205|consen 134 TTSRPRGFGFVTFDSEDSVDKVTLQ 158 (311)
T ss_pred cccccccceeeEeccccccceeccc
Confidence 7899999999999999655443
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.43 E-value=7.5e-13 Score=120.58 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=70.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+|||+.+++++|+++|+.||.|+.|.|+.+.. .+|||||+|.+.++|..|| .|+|..|.|+.|.|.++...
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccCC
Confidence 5899999999999999999999999999999998743 4789999999999999999 59999999999999998643
No 69
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.42 E-value=1.5e-13 Score=102.91 Aligned_cols=69 Identities=35% Similarity=0.570 Sum_probs=58.8
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeE
Q 009052 248 VYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 323 (545)
Q Consensus 248 l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~ 323 (545)
|||+|||+++|+++|+++|++||.|..+. +.....+..++||||+|.+.++|.+|+ .|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~-------~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIK-------VMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEE-------EEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccc-------ccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999875432 222134556899999999999999999 7999999999885
No 70
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=1.3e-12 Score=98.82 Aligned_cols=77 Identities=26% Similarity=0.536 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
+....|||.|||+.+|.+++.++|.+||.|..|+|-..+. .+|.|||-|++..+|.+|+..|+|..+.++.|.|-|-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3345799999999999999999999999999999976654 4899999999999999999999999999999999997
No 71
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.40 E-value=6.2e-12 Score=116.82 Aligned_cols=163 Identities=21% Similarity=0.213 Sum_probs=125.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH---HcCCceecCce
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM---ALDGIIFEGAP 321 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~---~l~g~~~~g~~ 321 (545)
+-.|.|++|-..++|.||.+.++.||. |..+.....+..|.|+|.+++.|+.|+ +-+...+.|+.
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~------------i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGP------------IAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCc------------eEEEEeccccceeeeeeccccchhhheehhccCcccccCch
Confidence 346999999999999999999999995 667777888999999999999999999 34556678887
Q ss_pred eEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEE--EcCCCCCCCHHHHHHHHHhcCCccEEEEee
Q 009052 322 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIF--VGGLPYYFTEAQIRELLESFGPLRGFDLVK 399 (545)
Q Consensus 322 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~ 399 (545)
-.+.+.......... .....+...|. |-|--+.+|.+-|..+|.+.|+|..|.|.+
T Consensus 99 Al~NyStsq~i~R~g----------------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk 156 (494)
T KOG1456|consen 99 ALFNYSTSQCIERPG----------------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK 156 (494)
T ss_pred hhcccchhhhhccCC----------------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe
Confidence 777665332211000 01111112333 444456789999999999999999999887
Q ss_pred cCCCCCcceEEEEEecChHHHHHHHHHhCCCcc--CCeEEEEEEcCCCC
Q 009052 400 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKM--GDKTLTVRRANQGA 446 (545)
Q Consensus 400 ~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~--~g~~l~v~~a~~~~ 446 (545)
. +|. .|.|||++.+.|++|..+|||..| +=++|+|.||++..
T Consensus 157 k--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 157 K--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred c--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 6 333 599999999999999999999877 44789999996654
No 72
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.40 E-value=1.7e-12 Score=126.61 Aligned_cols=168 Identities=24% Similarity=0.337 Sum_probs=114.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeE
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 323 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~ 323 (545)
.++|||+|||+.+|+++|.++|..||.|..+. ++.+..++.++|||||+|.+.++|..|+ .+++..|.|+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~------~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVR------LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEE------eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeE
Confidence 68999999999999999999999999886654 3344457889999999999999999999 8999999999999
Q ss_pred EeCCCC-CCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCC
Q 009052 324 VRRPSD-YNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE 402 (545)
Q Consensus 324 v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~ 402 (545)
|.+... .......... .. ....................+++.+++..+...++..+|..+|.+..+.+.....
T Consensus 189 v~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 189 VQKAQPASQPRSELSNN-----LD-ASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred eeccccccccccccccc-----cc-hhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 998653 1100000000 00 0000000111222233445799999999999999999999999997777665533
Q ss_pred CCCcceEEEEEecChHHHHHHH
Q 009052 403 TGNSKGYAFCVYQDLSVTDIAC 424 (545)
Q Consensus 403 ~g~~~g~afV~f~~~e~A~~A~ 424 (545)
........++.+.....+..++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 263 GKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred CcccccccccchhHHHhhhhhh
Confidence 2223333334444444443333
No 73
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=2.6e-12 Score=123.36 Aligned_cols=76 Identities=17% Similarity=0.356 Sum_probs=70.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecCh--HHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL--SVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~--e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
.+|||+||++.+++++|..+|+.||.|..|.|++ .+| +|||||+|.+. .++.+||..|||..+.|+.|+|..|.
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 4899999999999999999999999999999994 467 99999999987 68999999999999999999999994
Q ss_pred CC
Q 009052 444 QG 445 (545)
Q Consensus 444 ~~ 445 (545)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 43
No 74
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=5.3e-13 Score=105.02 Aligned_cols=84 Identities=23% Similarity=0.409 Sum_probs=69.0
Q ss_pred hhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEE--EecCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009052 240 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNV--YINHEKKFAFVEMRSVEEASNAM-ALDGII 316 (545)
Q Consensus 240 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~--~~~~~~g~afV~F~~~~~A~~a~-~l~g~~ 316 (545)
.+...+++|||+||+..++|++|.++|+.+|+|..+ |+-+ .+...-|||||+|.+.++|..|| -++|+.
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irri--------iMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr 102 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRI--------IMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR 102 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchhee--------EeccccCCcCccceEEEEEecchhHHHHHHHhccCc
Confidence 456789999999999999999999999999976432 2221 12223599999999999999999 899999
Q ss_pred ecCceeEEeCCCCCC
Q 009052 317 FEGAPVKVRRPSDYN 331 (545)
Q Consensus 317 ~~g~~l~v~~~~~~~ 331 (545)
|..++|.|.|...+.
T Consensus 103 Lddr~ir~D~D~GF~ 117 (153)
T KOG0121|consen 103 LDDRPIRIDWDAGFV 117 (153)
T ss_pred ccccceeeeccccch
Confidence 999999999865544
No 75
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.38 E-value=1.4e-12 Score=118.90 Aligned_cols=79 Identities=23% Similarity=0.299 Sum_probs=67.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCceeEE
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKV 324 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l~v 324 (545)
.++|||+|||+.+|+++|++||+.||.|..+. | +.-...+|||||+|.++++|..||.|+|..|.|+.|.|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~-------I--~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVE-------M--QSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------E--eecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEE
Confidence 46899999999999999999999999865432 1 11123579999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 009052 325 RRPSDYNP 332 (545)
Q Consensus 325 ~~~~~~~~ 332 (545)
.++..+..
T Consensus 75 t~a~~~~~ 82 (260)
T PLN03120 75 TPAEDYQL 82 (260)
T ss_pred EeccCCCC
Confidence 99876653
No 76
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=4.7e-13 Score=117.29 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCcee
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l 322 (545)
...++|||+||++.+..+.|+.+|++||+|+.+. +|.+..++++||||||.|.+.++|..|++--+-.|+|++.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eav------vitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~a 83 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAV------VITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKA 83 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEE------EEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccc
Confidence 3567899999999999999999999999999887 7888889999999999999999999999666677899987
Q ss_pred EEeCCC
Q 009052 323 KVRRPS 328 (545)
Q Consensus 323 ~v~~~~ 328 (545)
.+..+.
T Consensus 84 NcnlA~ 89 (247)
T KOG0149|consen 84 NCNLAS 89 (247)
T ss_pred ccchhh
Confidence 776654
No 77
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.2e-12 Score=114.71 Aligned_cols=78 Identities=28% Similarity=0.540 Sum_probs=72.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
++|||++|++.+..+.|+..|++||.|++..|+.|+.+|+++|||||+|.+.+.|.+|++.. .-.|+||...|.+|.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence 47999999999999999999999999999999999999999999999999999999999664 4678999999988755
No 78
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.4e-12 Score=108.81 Aligned_cols=75 Identities=28% Similarity=0.439 Sum_probs=65.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecC-CCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
..++|||+||+..+++.||...|..||.| ..+++-. ..|||||+|.++.+|..|+ .|+|..|+|..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~l------------rsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r 76 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPL------------RSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSR 76 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcc------------eeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCce
Confidence 36799999999999999999999999965 4444433 4799999999999999999 99999999999
Q ss_pred eEEeCCCCC
Q 009052 322 VKVRRPSDY 330 (545)
Q Consensus 322 l~v~~~~~~ 330 (545)
|.|......
T Consensus 77 ~rVE~S~G~ 85 (195)
T KOG0107|consen 77 IRVELSTGR 85 (195)
T ss_pred EEEEeecCC
Confidence 999876543
No 79
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=6.9e-13 Score=105.22 Aligned_cols=86 Identities=22% Similarity=0.232 Sum_probs=76.8
Q ss_pred hhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 240 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 240 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
+.+.....|||.|+...+||++|.+.|..||+|+.+. +-++..++-.+|||+|+|.+.++|++|+ .+||..|.
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNih------LNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll 140 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIH------LNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL 140 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhccccccee------eccccccccccceeeeehHhHHHHHHHHHhccchhhh
Confidence 3456788999999999999999999999999988766 5677778888999999999999999999 99999999
Q ss_pred CceeEEeCCCCCC
Q 009052 319 GAPVKVRRPSDYN 331 (545)
Q Consensus 319 g~~l~v~~~~~~~ 331 (545)
|++|.|.|+-...
T Consensus 141 ~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 141 GQNVSVDWCFVKG 153 (170)
T ss_pred CCceeEEEEEecC
Confidence 9999999975443
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=99.34 E-value=6e-12 Score=94.40 Aligned_cols=72 Identities=40% Similarity=0.731 Sum_probs=67.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEE
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 440 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~ 440 (545)
+|+|.|||..+++++|.++|..||.|..+.+..++ +.+.|+|||+|.+.++|..|+..|+|..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998875 6788999999999999999999999999999999873
No 81
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.33 E-value=3.2e-11 Score=114.32 Aligned_cols=72 Identities=26% Similarity=0.469 Sum_probs=66.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
++|||+|||.++|++.|++-|..||.|..+.|+ +.|+++| .|.|.++++|+.|+..|+|..|.|+.|+|.|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 689999999999999999999999999999884 3577777 89999999999999999999999999999984
No 82
>smart00360 RRM RNA recognition motif.
Probab=99.32 E-value=6.8e-12 Score=93.75 Aligned_cols=71 Identities=39% Similarity=0.696 Sum_probs=66.8
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEE
Q 009052 370 VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 440 (545)
Q Consensus 370 v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~ 440 (545)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778999999999999999999999999999999999873
No 83
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.1e-12 Score=112.95 Aligned_cols=81 Identities=21% Similarity=0.395 Sum_probs=78.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||++|...+++.-|...|-+||.|+.|.++.|-.+++++|||||+|.-.|+|.+||..||+.+|.|++|+|.+|.+.
T Consensus 11 rtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 58999999999999999999999999999999999899999999999999999999999999999999999999999766
Q ss_pred C
Q 009052 446 A 446 (545)
Q Consensus 446 ~ 446 (545)
.
T Consensus 91 k 91 (298)
T KOG0111|consen 91 K 91 (298)
T ss_pred c
Confidence 5
No 84
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.31 E-value=4.2e-12 Score=113.65 Aligned_cols=80 Identities=23% Similarity=0.231 Sum_probs=67.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCceeE
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 323 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l~ 323 (545)
...+|||+||++.+|+++|++||+.||.|..+. ++ .-+..++||||+|.++++|..|+.|+|..|.+++|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~------I~---~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~ 74 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVE------II---RSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVC 74 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEE------Ee---cCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEE
Confidence 346899999999999999999999999875543 11 124556899999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 009052 324 VRRPSDYNP 332 (545)
Q Consensus 324 v~~~~~~~~ 332 (545)
|.....+..
T Consensus 75 It~~~~y~~ 83 (243)
T PLN03121 75 ITRWGQYED 83 (243)
T ss_pred EEeCccccc
Confidence 988776653
No 85
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.31 E-value=1.5e-10 Score=107.70 Aligned_cols=272 Identities=16% Similarity=0.121 Sum_probs=169.2
Q ss_pred hccccceEEEcCCC--CCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEE-ecCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009052 241 ATRHARRVYVGGLP--PTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY-INHEKKFAFVEMRSVEEASNAM-ALDGII 316 (545)
Q Consensus 241 ~~~~~~~l~V~nLp--~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~-~~~~~g~afV~F~~~~~A~~a~-~l~g~~ 316 (545)
...+++.|.+.=|. +.+|-+-|+.+....|.| ..+. +.++--.|.|||.+.+.|++|. .|||..
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkV------------lRIvIfkkngVQAmVEFdsv~~AqrAk~alNGAD 183 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKV------------LRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGAD 183 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCce------------EEEEEEeccceeeEEeechhHHHHHHHhhccccc
Confidence 34566666666554 568999999999999964 3333 3444558999999999999999 999987
Q ss_pred ec-C-ceeEEeCCCCCC---------CC-ccc-----cCCC------CCCCCC------cccc--c--------------
Q 009052 317 FE-G-APVKVRRPSDYN---------PS-LAA-----TLGP------SQPNPN------LNLA--A-------------- 351 (545)
Q Consensus 317 ~~-g-~~l~v~~~~~~~---------~~-~~~-----~~~~------~~~~~~------~~~~--~-------------- 351 (545)
|. | .+|+|.+++... .| ... ...+ .+..+. .++. .
T Consensus 184 IYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~ 263 (494)
T KOG1456|consen 184 IYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHP 263 (494)
T ss_pred ccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCC
Confidence 64 3 578887665320 00 000 0000 000000 0000 0
Q ss_pred ----------ccCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHH
Q 009052 352 ----------VGLTPGSAGGLEGPDRIFVGGLPYY-FTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVT 420 (545)
Q Consensus 352 ----------~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A 420 (545)
.+.....+......+.++|.+|... ++-+.|..+|=.||.|+.|++++.+ .|.|.|++.+..+.
T Consensus 264 ~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~av 338 (494)
T KOG1456|consen 264 PPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAV 338 (494)
T ss_pred CCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHH
Confidence 0000111233345578999999875 6779999999999999999999885 68999999999999
Q ss_pred HHHHHHhCCCccCCeEEEEEEcCCCCCCCCh---------hhHHHHHHHHHHH-HHHHhhcCCCCCCceeEEecCCCCcc
Q 009052 421 DIACAALNGIKMGDKTLTVRRANQGANQPKP---------EQESVLLHAQQQI-ALQRLMLQPGSVPSKVVCLTQVVSAD 490 (545)
Q Consensus 421 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~n~~~~~ 490 (545)
+.|+..||+..+.|.+|.|.+++.....+.. ..........+.. ........-...|+.+|..-|. +.
T Consensus 339 er~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNa--P~ 416 (494)
T KOG1456|consen 339 ERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNA--PL 416 (494)
T ss_pred HHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecC--CC
Confidence 9999999999999999999998666533321 1111111111100 1111112223457777777766 44
Q ss_pred cCCChHHHHHHHHHHHHHHhccCC----ceee----cCCceEEEEeCCCCCcCcccc
Q 009052 491 ELKDDEEYEEILEDMRQEGGKFAF----CSPT----FCYKESGLIYTDRRLHNPQFV 539 (545)
Q Consensus 491 ~l~~~~~~~~~~~~l~~~f~~fG~----V~~v----~~~g~afV~F~~~e~A~a~~~ 539 (545)
.++++ .|..+|..-+. |.-+ ...--+.++|++.++|.-+++
T Consensus 417 ~vtEe--------~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~ 465 (494)
T KOG1456|consen 417 GVTEE--------QLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALM 465 (494)
T ss_pred ccCHH--------HHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHH
Confidence 44443 55556644332 2222 333456999999999955544
No 86
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.31 E-value=1.4e-11 Score=110.29 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=69.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.+|+|+||++.+++++|+++|+.||.|.+|.|+.+. ...|+|||+|.++++|..|+ .|+|..|.++.|.|.....
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 589999999999999999999999999999999883 44689999999999999999 8999999999999998654
No 87
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=1.2e-13 Score=115.62 Aligned_cols=86 Identities=26% Similarity=0.400 Sum_probs=78.6
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
.-..+.-|||+|||+.+||.||.-+|++||.|+.++ +|.+..+|+++||||+.|.+.-+...|+ .|||+.|.|
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdin------LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g 104 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDIN------LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG 104 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEE------EEecCCCCcccceEEEEecCccceEEEEeccCCceecc
Confidence 345677899999999999999999999999998887 7888999999999999999999999999 999999999
Q ss_pred ceeEEeCCCCCCC
Q 009052 320 APVKVRRPSDYNP 332 (545)
Q Consensus 320 ~~l~v~~~~~~~~ 332 (545)
+.|+|.....+..
T Consensus 105 RtirVDHv~~Yk~ 117 (219)
T KOG0126|consen 105 RTIRVDHVSNYKK 117 (219)
T ss_pred eeEEeeecccccC
Confidence 9999987666553
No 88
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.28 E-value=3e-12 Score=119.22 Aligned_cols=190 Identities=21% Similarity=0.207 Sum_probs=127.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEE--EecCCCcEEEEEecCHHHHHHHHHcCCceecCceeEE
Q 009052 247 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNV--YINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKV 324 (545)
Q Consensus 247 ~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~--~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l~v 324 (545)
-|-++|||+++|+.||.+||..-..|.... +.|.-+ ..++-.|-|||.|..+++|+.||..+...|+-+-|.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~-----egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGT-----EGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCc-----cceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 477899999999999999998554443221 123333 2466689999999999999999977777787777777
Q ss_pred eCCCCCCCCccccCCCC-CCCCCccccccc-CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ccE--EEEee
Q 009052 325 RRPSDYNPSLAATLGPS-QPNPNLNLAAVG-LTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP-LRG--FDLVK 399 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~--v~i~~ 399 (545)
-+.....-....+.... ...+.+...... .............+|-+++||+..+.++|..+|..|-. |.. |.++.
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 54332211000000000 000000000000 00001111122458999999999999999999999876 433 66666
Q ss_pred cCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 400 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 400 ~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
+ ..|.+.|-|||+|.+.|+|.+|....+.....++.|.|-.+
T Consensus 318 N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 318 N-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred c-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 6 46889999999999999999999999988888999998776
No 89
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.28 E-value=1.3e-11 Score=87.51 Aligned_cols=56 Identities=25% Similarity=0.530 Sum_probs=51.2
Q ss_pred HHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 382 IRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 382 l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
|.++|++||.|..|.+.... .++|||+|.+.++|..|+..|||..|.|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998762 589999999999999999999999999999999986
No 90
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.27 E-value=8.9e-12 Score=123.50 Aligned_cols=81 Identities=36% Similarity=0.672 Sum_probs=77.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
+.|||+|||+++++++|..+|+..|.|.+++++.|+.+|..+|||||+|.+.++|..|+..|||..+.|+.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998544
Q ss_pred C
Q 009052 446 A 446 (545)
Q Consensus 446 ~ 446 (545)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 91
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=6.4e-12 Score=110.57 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=75.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
...++|-|.||+.+++|++|+++|..||.|..++ ++++..+|.++|||||.|.+.++|.+|+ .|||.-+..--
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvy------lardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LI 260 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVY------LARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLI 260 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeE------EEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEE
Confidence 4678999999999999999999999999998877 7888899999999999999999999999 89999999999
Q ss_pred eEEeCCCC
Q 009052 322 VKVRRPSD 329 (545)
Q Consensus 322 l~v~~~~~ 329 (545)
|.|.|+++
T Consensus 261 LrvEwskP 268 (270)
T KOG0122|consen 261 LRVEWSKP 268 (270)
T ss_pred EEEEecCC
Confidence 99999764
No 92
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=3.8e-11 Score=100.86 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=102.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.+.|||+|||.++-+.+|.++|.+||.|..|.|...+ ...+||||+|++.-+|..||..-+|..++|..|.|.|+..
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 3689999999999999999999999999999986542 2357999999999999999999999999999999999865
Q ss_pred CCCCCChhhHHHHHHH-HHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee--cCC
Q 009052 445 GANQPKPEQESVLLHA-QQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT--FCY 521 (545)
Q Consensus 445 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v--~~~ 521 (545)
...... .-.....- ...-..-.-...+.-....-+.+..+..... | +||+.++-+-|.|-.. ...
T Consensus 83 gr~s~~--~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgS------W----QDLKDHmReaGdvCfadv~rD 150 (241)
T KOG0105|consen 83 GRSSSD--RRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGS------W----QDLKDHMREAGDVCFADVQRD 150 (241)
T ss_pred CCcccc--cccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCc------h----HHHHHHHHhhCCeeeeeeecc
Confidence 531100 00000000 0000000000011222344555555532221 1 2788888888888666 556
Q ss_pred ceEEEEeCCCCCc
Q 009052 522 KESGLIYTDRRLH 534 (545)
Q Consensus 522 g~afV~F~~~e~A 534 (545)
|.+.|+|...|+-
T Consensus 151 g~GvV~~~r~eDM 163 (241)
T KOG0105|consen 151 GVGVVEYLRKEDM 163 (241)
T ss_pred cceeeeeeehhhH
Confidence 6778888877665
No 93
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.6e-11 Score=117.25 Aligned_cols=173 Identities=20% Similarity=0.228 Sum_probs=117.5
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCc---EEEEEecCHHHHHHHH-HcCCce
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK---FAFVEMRSVEEASNAM-ALDGII 316 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g---~afV~F~~~~~A~~a~-~l~g~~ 316 (545)
...-+++||||+||++++|+.|...|..||.++--. +. .......-..+| |+|+.|.++...+..| +..- .
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdW-P~---k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~ 329 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDW-PG---KANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-G 329 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeec-CC---CccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-c
Confidence 345678999999999999999999999999753111 10 000111122356 9999999999988877 3211 1
Q ss_pred ecCceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHH-hcCCccEE
Q 009052 317 FEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLE-SFGPLRGF 395 (545)
Q Consensus 317 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v 395 (545)
-..--++|.-+...... .....+.+.............++.++|||++||--++.++|..+|+ -||.|..+
T Consensus 330 ~~~~yf~vss~~~k~k~--------VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~ya 401 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKE--------VQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYV 401 (520)
T ss_pred ccceEEEEecCcccccc--------eeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEE
Confidence 11112223222111100 0000111222222333445566778999999999999999999999 59999999
Q ss_pred EEeecCCCCCcceEEEEEecChHHHHHHHHH
Q 009052 396 DLVKDRETGNSKGYAFCVYQDLSVTDIACAA 426 (545)
Q Consensus 396 ~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~ 426 (545)
-|-.|++-+.++|-|-|.|.+...-.+||.+
T Consensus 402 GIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 402 GIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 9999988899999999999999999999965
No 94
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.26 E-value=3.3e-11 Score=122.29 Aligned_cols=79 Identities=20% Similarity=0.409 Sum_probs=71.3
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
...-++|||||+|+..++|.||.++|+.||. |..+.+..++|||||.+....+|.+|| +|++..+.+
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGe------------iqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~ 484 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGE------------IQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVAD 484 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhccc------------ceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccc
Confidence 3456789999999999999999999999996 667778889999999999999999999 999999999
Q ss_pred ceeEEeCCCCCC
Q 009052 320 APVKVRRPSDYN 331 (545)
Q Consensus 320 ~~l~v~~~~~~~ 331 (545)
+.|+|.|+-.+.
T Consensus 485 k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 485 KTIKIAWAVGKG 496 (894)
T ss_pred eeeEEeeeccCC
Confidence 999999976543
No 95
>smart00361 RRM_1 RNA recognition motif.
Probab=99.26 E-value=2.5e-11 Score=90.27 Aligned_cols=61 Identities=15% Similarity=0.296 Sum_probs=54.1
Q ss_pred HHHHHHHHH----hcCCccEEE-EeecCCC--CCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEE
Q 009052 379 EAQIRELLE----SFGPLRGFD-LVKDRET--GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 439 (545)
Q Consensus 379 ~~~l~~~f~----~~G~i~~v~-i~~~~~~--g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v 439 (545)
+++|+++|+ +||.|..|. |+.++.+ +.++|+|||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567777887 999999995 6666555 889999999999999999999999999999999986
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.25 E-value=4.8e-11 Score=89.93 Aligned_cols=74 Identities=39% Similarity=0.690 Sum_probs=68.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
+|+|.|||..+++++|.++|..||.|..+.+..++.+ .+.|+|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987543 6689999999999999999999999999999999874
No 97
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=3.3e-11 Score=110.50 Aligned_cols=81 Identities=20% Similarity=0.370 Sum_probs=68.9
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe--cCCCcEEEEEecCHHHHHHHH-HcCCcee
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI--NHEKKFAFVEMRSVEEASNAM-ALDGIIF 317 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~--~~~~g~afV~F~~~~~A~~a~-~l~g~~~ 317 (545)
.....++|+|.|||+..-+.||+.+|.+||.|+++. |.+ --+||||||.|.++++|.+|- +|+|..+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVE----------IIfNERGSKGFGFVTmen~~dadRARa~LHgt~V 161 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVE----------IIFNERGSKGFGFVTMENPADADRARAELHGTVV 161 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEE----------EEeccCCCCccceEEecChhhHHHHHHHhhccee
Confidence 345678999999999999999999999999865432 222 247999999999999999999 9999999
Q ss_pred cCceeEEeCCCCCC
Q 009052 318 EGAPVKVRRPSDYN 331 (545)
Q Consensus 318 ~g~~l~v~~~~~~~ 331 (545)
.|++|.|..+....
T Consensus 162 EGRkIEVn~ATarV 175 (376)
T KOG0125|consen 162 EGRKIEVNNATARV 175 (376)
T ss_pred eceEEEEeccchhh
Confidence 99999999876543
No 98
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=2.5e-11 Score=91.94 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=66.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecC---CCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH---EKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~---~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
..+-|||.|||+.+|.+++.++|..||. |..+.+|. .+|.|||.|.++.+|.+|+ .|+|..+.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~------------IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGT------------IRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccc------------eEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC
Confidence 4568999999999999999999999996 56666665 4799999999999999999 999999999
Q ss_pred ceeEEeCCCCC
Q 009052 320 APVKVRRPSDY 330 (545)
Q Consensus 320 ~~l~v~~~~~~ 330 (545)
+.|.|.+....
T Consensus 85 ryl~vlyyq~~ 95 (124)
T KOG0114|consen 85 RYLVVLYYQPE 95 (124)
T ss_pred ceEEEEecCHH
Confidence 99999876543
No 99
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.5e-11 Score=111.29 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=74.1
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+-+||||+-|+++++|..|+..|+.||+|+.+. +|.+..+++++|||||+|.+.-+...|. ..+|++|.|+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~Ikrir------lV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIR------LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEE------EeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 35789999999999999999999999999998887 7888899999999999999999999999 8999999999
Q ss_pred eeEEeC
Q 009052 321 PVKVRR 326 (545)
Q Consensus 321 ~l~v~~ 326 (545)
.|.|..
T Consensus 172 ri~VDv 177 (335)
T KOG0113|consen 172 RILVDV 177 (335)
T ss_pred EEEEEe
Confidence 999965
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.21 E-value=8.8e-11 Score=114.36 Aligned_cols=80 Identities=40% Similarity=0.766 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
..+|||+|||..+++++|.++|..||.|..|.+..++.+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999753
No 101
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.21 E-value=5e-11 Score=115.42 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=111.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
...|.+++||+++|+++|.++|+.++ |+.+.+.+. +|+..|-|||+|.+.|++.+|| +++-..++.+-|.|--+..
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEccCC
Confidence 34799999999999999999999985 777666664 7999999999999999999999 5588889999999988755
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee------
Q 009052 445 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------ 518 (545)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v------ 518 (545)
....-. + +........+-.||-|..+ +|.+++++|.++|+.-=.|...
T Consensus 86 ~e~d~~---------------~-~~~g~~s~~~d~vVRLRGL----------Pfscte~dI~~FFaGL~Iv~~gi~l~~d 139 (510)
T KOG4211|consen 86 AEADWV---------------M-RPGGPNSSANDGVVRLRGL----------PFSCTEEDIVEFFAGLEIVPDGILLPMD 139 (510)
T ss_pred cccccc---------------c-cCCCCCCCCCCceEEecCC----------CccCcHHHHHHHhcCCcccccceeeecc
Confidence 543110 0 0011112246678888777 3445556999999876655551
Q ss_pred ---cCCceEEEEeCCCCCcCccccc
Q 009052 519 ---FCYKESGLIYTDRRLHNPQFVY 540 (545)
Q Consensus 519 ---~~~g~afV~F~~~e~A~a~~~~ 540 (545)
...|.|||+|.+.+.|+.|+..
T Consensus 140 ~rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 140 QRGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CCCCcccceEEEecCHHHHHHHHHH
Confidence 6789999999999999777643
No 102
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.20 E-value=2.1e-11 Score=91.07 Aligned_cols=64 Identities=34% Similarity=0.654 Sum_probs=53.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe-----cCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 248 VYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI-----NHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 248 l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
|||+|||+.+++++|+++|+.||.| ..+.+ +..+++|||+|.++++|..|+ .+++..|.|+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v------------~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPV------------EKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBE------------EEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCc------------ceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 7999999999999999999999864 33333 334799999999999999999 67779999998
Q ss_pred eE
Q 009052 322 VK 323 (545)
Q Consensus 322 l~ 323 (545)
|.
T Consensus 69 l~ 70 (70)
T PF14259_consen 69 LR 70 (70)
T ss_dssp EE
T ss_pred cC
Confidence 74
No 103
>PLN03213 repressor of silencing 3; Provisional
Probab=99.20 E-value=1.9e-11 Score=117.57 Aligned_cols=76 Identities=16% Similarity=0.382 Sum_probs=65.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCH--HHHHHHH-HcCCceecCc
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSV--EEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~--~~A~~a~-~l~g~~~~g~ 320 (545)
..-+||||||++.+|+++|..+|..||.|..+. |+ ..++ +|||||+|.+. .++.+|+ .|||..|.|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVE-------Ip-RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVE-------FV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-------Ee-cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 446899999999999999999999999987664 22 3344 99999999987 7899999 8999999999
Q ss_pred eeEEeCCCC
Q 009052 321 PVKVRRPSD 329 (545)
Q Consensus 321 ~l~v~~~~~ 329 (545)
.|+|..++.
T Consensus 79 ~LKVNKAKP 87 (759)
T PLN03213 79 RLRLEKAKE 87 (759)
T ss_pred eeEEeeccH
Confidence 999987753
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.18 E-value=1.5e-11 Score=121.97 Aligned_cols=80 Identities=28% Similarity=0.438 Sum_probs=75.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
+.|||||||+++++++|.++|+..|.|++++ .+.+..+|..+||||++|.+.++|..|+ .|||..+.|++|+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~------~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFR------LVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceee------ecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 7899999999999999999999999999988 7888899999999999999999999999 99999999999999
Q ss_pred eCCCCCC
Q 009052 325 RRPSDYN 331 (545)
Q Consensus 325 ~~~~~~~ 331 (545)
.|+....
T Consensus 93 ~~~~~~~ 99 (435)
T KOG0108|consen 93 NYASNRK 99 (435)
T ss_pred ecccccc
Confidence 9987554
No 105
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.18 E-value=2.5e-11 Score=103.86 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=70.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
...+|.|-||.+.++.++|+.+|++||.|-.++ +-.+..+..++|||||.|....+|+.|| +|+|.+|.|+.|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVy------IPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVY------IPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCccccee------cccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 456799999999999999999999999876655 3455667889999999999999999999 999999999999
Q ss_pred EEeCCCC
Q 009052 323 KVRRPSD 329 (545)
Q Consensus 323 ~v~~~~~ 329 (545)
.|+.+.-
T Consensus 86 rVq~ary 92 (256)
T KOG4207|consen 86 RVQMARY 92 (256)
T ss_pred eehhhhc
Confidence 9987753
No 106
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.15 E-value=6e-10 Score=111.68 Aligned_cols=196 Identities=14% Similarity=0.057 Sum_probs=139.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCC-CcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE-KKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~-~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
...+.+-+.+++.+..+.|++.||...- +...++.++ ..+.+ .|-++|+|..+..+++|+.-|...+-.+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~-------~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~ 380 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRN-------AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRP 380 (944)
T ss_pred chhheeeecccccccccchhhhhcCccc-------ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCchhhhhcc
Confidence 4567888899999999999999987541 111112222 23334 79999999999999999998999999999
Q ss_pred eEEeCCCCCCCCccccCCCCCCCCCcc----------cccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC
Q 009052 322 VKVRRPSDYNPSLAATLGPSQPNPNLN----------LAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP 391 (545)
Q Consensus 322 l~v~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 391 (545)
+.|..+.+.....+.......+..... ..................+|||..||..+++.++.++|...-.
T Consensus 381 ~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~ 460 (944)
T KOG4307|consen 381 FQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAA 460 (944)
T ss_pred eeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhh
Confidence 999877655543333222222211100 0000100111122233468999999999999999999999878
Q ss_pred ccE-EEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCC
Q 009052 392 LRG-FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 447 (545)
Q Consensus 392 i~~-v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 447 (545)
|++ |.|.+.+ ++..++.|||.|..++++..|+..-+.++++.+.|.|.-..++.+
T Consensus 461 Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 461 VEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred hhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 777 6666664 777889999999999999999988888999999999988765554
No 107
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.8e-11 Score=105.57 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=74.3
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
....++|||++|...+||.-|...|-+||.|..+. ...+....+.+|||||+|...|+|..|| .||+..|.|+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIq------iPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Gr 80 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQ------IPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGR 80 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcc------cccchhcccccceeEEEeeccchhHHHhhcCchhhhcce
Confidence 34568999999999999999999999999988776 4556677889999999999999999999 9999999999
Q ss_pred eeEEeCCCCC
Q 009052 321 PVKVRRPSDY 330 (545)
Q Consensus 321 ~l~v~~~~~~ 330 (545)
.|+|.++.+.
T Consensus 81 tirVN~AkP~ 90 (298)
T KOG0111|consen 81 TIRVNLAKPE 90 (298)
T ss_pred eEEEeecCCc
Confidence 9999887654
No 108
>smart00362 RRM_2 RNA recognition motif.
Probab=99.12 E-value=3.6e-10 Score=84.59 Aligned_cols=70 Identities=34% Similarity=0.591 Sum_probs=58.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 247 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 247 ~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
+|||+|||..+++++|+++|..||.+..+. +.... +.++|+|||+|.+.++|..|+ .+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~-------~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVK-------IPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEE-------EecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 589999999999999999999999754332 11111 445799999999999999999 89999999999887
No 109
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.8e-10 Score=102.39 Aligned_cols=145 Identities=15% Similarity=0.245 Sum_probs=107.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCC
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 446 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 446 (545)
.+||++||+.+.+.+|..+|..||.|..|.+. .||+||+|.+..+|..|+-.|||..|+|..+.|.|+....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 69999999999999999999999999999875 4689999999999999999999999999999999986432
Q ss_pred CCC-C---hhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-cCC
Q 009052 447 NQP-K---PEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-FCY 521 (545)
Q Consensus 447 ~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v-~~~ 521 (545)
-.. . ...... +. .......+...+.+.|+.. ..-..+|...|.++|.+... ...
T Consensus 75 ~~~g~~~~g~r~~~---------~~--~~~~p~~s~~r~~~~~~~~----------r~~~qdl~d~~~~~g~~~~~~~~~ 133 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSD---------SR--RYRPPSRTHFRLIVRNLSL----------RVSWQDLKDHFRPAGEVTYVDARR 133 (216)
T ss_pred cccCCCCCCCccch---------hh--ccCCcccccceeeeccchh----------hhhHHHHhhhhcccCCCchhhhhc
Confidence 110 0 000000 00 0111233444555555421 11124899999999999655 678
Q ss_pred ceEEEEeCCCCCcCccccc
Q 009052 522 KESGLIYTDRRLHNPQFVY 540 (545)
Q Consensus 522 g~afV~F~~~e~A~a~~~~ 540 (545)
+++||+|.+.++|+.++-.
T Consensus 134 ~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 134 NFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred cccceeehhhhhhhhcchh
Confidence 9999999999999776543
No 110
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=8.4e-12 Score=107.74 Aligned_cols=141 Identities=23% Similarity=0.332 Sum_probs=115.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecC----CCcEEEEEecCHHHHHHHH-HcCCce
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH----EKKFAFVEMRSVEEASNAM-ALDGII 316 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~----~~g~afV~F~~~~~A~~a~-~l~g~~ 316 (545)
....+||||+||...++|+-|.++|-+.|+| +.+.+.. ...||||.|.++-....|+ .+||..
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV------------~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~ 73 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPV------------YKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDD 73 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCce------------EEEeCCCCccCCCceeeeecccccchhhhhhhcccch
Confidence 3467899999999999999999999999975 4443322 2249999999999999999 899999
Q ss_pred ecCceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcC----CCCCCCHHHHHHHHHhcCCc
Q 009052 317 FEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGG----LPYYFTEAQIRELLESFGPL 392 (545)
Q Consensus 317 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----lp~~~~~~~l~~~f~~~G~i 392 (545)
+.+..++|. ++.++ |...++++.+...|+..|.+
T Consensus 74 l~~~e~q~~------------------------------------------~r~G~shapld~r~~~ei~~~v~s~a~p~ 111 (267)
T KOG4454|consen 74 LEEDEEQRT------------------------------------------LRCGNSHAPLDERVTEEILYEVFSQAGPI 111 (267)
T ss_pred hccchhhcc------------------------------------------cccCCCcchhhhhcchhhheeeecccCCC
Confidence 999999884 45555 67778999999999999999
Q ss_pred cEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEE
Q 009052 393 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 437 (545)
Q Consensus 393 ~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l 437 (545)
..+++..+. +|.++.++|+.+......-.|+....+..+.-+.+
T Consensus 112 ~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 112 EGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred CCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 999999884 58888899999988887778877666655433333
No 111
>smart00360 RRM RNA recognition motif.
Probab=99.06 E-value=2.4e-10 Score=85.24 Aligned_cols=69 Identities=38% Similarity=0.570 Sum_probs=56.6
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 250 VGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 250 V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
|+|||..+++++|+++|..||.|..+. .......+.++|||||+|.+.++|..|+ .+++..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~------i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVR------LVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEE------EEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999999999999765432 1111113556899999999999999999 89999999999887
No 112
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.06 E-value=7.8e-10 Score=98.07 Aligned_cols=166 Identities=20% Similarity=0.305 Sum_probs=120.5
Q ss_pred eEEEcCCCCCCCHHH-H--HHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 247 RVYVGGLPPTANEQS-V--ATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 247 ~l~V~nLp~~~te~~-l--~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
.++++++-..+..+- | ...|+.|-.+... .++...-+.-.+++|+.|.....-.++- .-++..++-.+|
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~kt-------k~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~V 170 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKT-------KLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPV 170 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhh-------hhhhcCCCccCcccccCcchhhhhhhhccccccccccCcce
Confidence 445555554443333 2 4445544332211 1333344556789999999887777777 667777777777
Q ss_pred EEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCC
Q 009052 323 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE 402 (545)
Q Consensus 323 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~ 402 (545)
++........... ..-...-.+||++.|..+++.+.|...|.+|-......+++++-
T Consensus 171 R~a~gtswedPsl-----------------------~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkR 227 (290)
T KOG0226|consen 171 RLAAGTSWEDPSL-----------------------AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKR 227 (290)
T ss_pred eeccccccCCccc-----------------------ccCccccceeecccccccccHHHHHHHHHhccchhhcccccccc
Confidence 7755443332110 11111224899999999999999999999999999999999999
Q ss_pred CCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 403 TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 403 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
||+++||+||.|.+..++..|+..|+|..++.+.|++..+
T Consensus 228 TgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 228 TGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 9999999999999999999999999999999999998766
No 113
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.06 E-value=4.3e-10 Score=84.66 Aligned_cols=73 Identities=33% Similarity=0.540 Sum_probs=59.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEEe
Q 009052 247 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVR 325 (545)
Q Consensus 247 ~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v~ 325 (545)
+|+|+|||+.+++++|.++|..||.|..+. +.........++|||+|.+.++|..|+ .+++..+.|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~-------~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVR-------IVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEE-------EeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 489999999999999999999999754332 111111234799999999999999999 899999999999885
Q ss_pred C
Q 009052 326 R 326 (545)
Q Consensus 326 ~ 326 (545)
+
T Consensus 74 ~ 74 (74)
T cd00590 74 F 74 (74)
T ss_pred C
Confidence 3
No 114
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=1.9e-10 Score=102.30 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=74.3
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.|.|||..||.+.++.+|.++|-.||.|++.+ +.++..++.+|.|+||.|.++.+|+.|| .|||+.|+-+
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaK------VFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAK------VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeee------eeehhccccccceeeEecCCchhHHHHHHHhcchhhhhh
Confidence 45789999999999999999999999999999887 7888899999999999999999999999 9999999999
Q ss_pred eeEEeC
Q 009052 321 PVKVRR 326 (545)
Q Consensus 321 ~l~v~~ 326 (545)
.|+|..
T Consensus 356 RLKVQL 361 (371)
T KOG0146|consen 356 RLKVQL 361 (371)
T ss_pred hhhhhh
Confidence 988865
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1.8e-10 Score=118.94 Aligned_cols=165 Identities=19% Similarity=0.338 Sum_probs=133.4
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
....+.+||++||+..+++.+|+..|..+|.|..+. |..-.++....||||.|.+...+-.|+ ++.+..|..
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VD-------iKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVD-------IKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN 440 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccc-------cccCCCCcccchhhhhhhccccCcccchhhcCCcccc
Confidence 456789999999999999999999999999875442 333335566779999999999999999 888887766
Q ss_pred ceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEee
Q 009052 320 APVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVK 399 (545)
Q Consensus 320 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~ 399 (545)
-.+++.+... .....+.+++++|+.++....|..+|..||.|..|.+-.
T Consensus 441 g~~r~glG~~-------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h 489 (975)
T KOG0112|consen 441 GTHRIGLGQP-------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH 489 (975)
T ss_pred Cccccccccc-------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc
Confidence 5665544211 011224799999999999999999999999999987744
Q ss_pred cCCCCCcceEEEEEecChHHHHHHHHHhCCCccCC--eEEEEEEcCCCCCCC
Q 009052 400 DRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRANQGANQP 449 (545)
Q Consensus 400 ~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~~~ 449 (545)
. .-||||.|++...|+.|+..|-|..|+| +.|.|.|+......|
T Consensus 490 g------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 490 G------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred C------CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCCCh
Confidence 3 4599999999999999999999999976 779999997766544
No 116
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.00 E-value=3.3e-10 Score=107.54 Aligned_cols=177 Identities=19% Similarity=0.226 Sum_probs=135.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCc-eecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGI-IFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~-~~~g~~l 322 (545)
..+++|++++...+.+.++..++..+|.+..+. .+..-....++|+++|.|...+.+..|+.+.+. .+.+..+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~------~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDAR------SSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccch------hhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 467899999999999999999999999654332 222234566899999999999999999977775 4555555
Q ss_pred EEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEE-EcCCCCCCCHHHHHHHHHhcCCccEEEEeecC
Q 009052 323 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIF-VGGLPYYFTEAQIRELLESFGPLRGFDLVKDR 401 (545)
Q Consensus 323 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~ 401 (545)
............+. ...........+++ |.+|+..+++++|+..|..+|.|..+.++..+
T Consensus 161 ~~dl~~~~~~~~~n-------------------~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~ 221 (285)
T KOG4210|consen 161 EKDLNTRRGLRPKN-------------------KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE 221 (285)
T ss_pred cCcccccccccccc-------------------hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCC
Confidence 44333222210000 00111122223555 99999999999999999999999999999999
Q ss_pred CCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCC
Q 009052 402 ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 446 (545)
Q Consensus 402 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 446 (545)
.++..+|+|||.|.....+..|+.. ....+.++++.|.+.....
T Consensus 222 ~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 222 ESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred CccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 9999999999999999999999977 8899999999999985543
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.00 E-value=1.3e-09 Score=94.02 Aligned_cols=80 Identities=29% Similarity=0.513 Sum_probs=74.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhc-CCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESF-GPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
..++|..+|..+.+.+|...|.+| |.|..+++.+++.||+++|||||+|++.+.|.-|-+.||+..|.++.|.|.+..+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 469999999999999999999998 6688888889999999999999999999999999999999999999999999854
Q ss_pred C
Q 009052 445 G 445 (545)
Q Consensus 445 ~ 445 (545)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 4
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=6.3e-10 Score=102.93 Aligned_cols=82 Identities=21% Similarity=0.411 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
.+.+.|||--|.+-++.++|.-+|+.||+|.+|.|+++..||.+-.||||+|++.+++.+|+-.|++..|..+.|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 009052 443 NQ 444 (545)
Q Consensus 443 ~~ 444 (545)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 43
No 119
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.99 E-value=6.2e-09 Score=106.11 Aligned_cols=77 Identities=27% Similarity=0.465 Sum_probs=72.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||++|+..+++.||..+|+.||.|++|.++.. +|||||.+..-.+|.+|+.+|+...+.++.|+|.|+..+
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 48999999999999999999999999999999876 899999999999999999999999999999999999766
Q ss_pred CCC
Q 009052 446 ANQ 448 (545)
Q Consensus 446 ~~~ 448 (545)
...
T Consensus 496 G~k 498 (894)
T KOG0132|consen 496 GPK 498 (894)
T ss_pred Ccc
Confidence 543
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=5.2e-11 Score=122.48 Aligned_cols=153 Identities=21% Similarity=0.257 Sum_probs=129.3
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCc
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 320 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~ 320 (545)
.....+++||.||++.+.+.+|...|..+|-+..+. +++.+..+.-+|+|||+|..+++|.+|+.++...+.|+
T Consensus 663 ~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vq------i~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK 736 (881)
T KOG0128|consen 663 EIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQ------IVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK 736 (881)
T ss_pred HHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHH------HHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh
Confidence 346778999999999999999999999998765443 23333445668999999999999999997766655551
Q ss_pred eeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeec
Q 009052 321 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 400 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 400 (545)
..|+|.|+|+..|.+.++.+|+.+|.++++.++..
T Consensus 737 ---------------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~ 771 (881)
T KOG0128|consen 737 ---------------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV 771 (881)
T ss_pred ---------------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhh
Confidence 26899999999999999999999999999998877
Q ss_pred CCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 401 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 401 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
..|.++|.|||.|.+..+|.+++..+.+..+.-+.+.|..+++.
T Consensus 772 -r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 772 -RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred -hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 47999999999999999999999888888888888888886553
No 121
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.96 E-value=2.4e-09 Score=93.02 Aligned_cols=83 Identities=25% Similarity=0.345 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeec-CCCCCcceEEEEEecChHHHHHHHHHhCCCcc---CCeEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD-RETGNSKGYAFCVYQDLSVTDIACAALNGIKM---GDKTLTV 439 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~---~g~~l~v 439 (545)
..++|||.+||.++..-+|..+|..|-.-+.+.|... +.....+-+|||.|.+..+|..|+.+|||..| .+.+|.|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3579999999999999999999999988777766543 22223457999999999999999999999998 5889999
Q ss_pred EEcCCCC
Q 009052 440 RRANQGA 446 (545)
Q Consensus 440 ~~a~~~~ 446 (545)
.+++...
T Consensus 113 ElAKSNt 119 (284)
T KOG1457|consen 113 ELAKSNT 119 (284)
T ss_pred eehhcCc
Confidence 9986554
No 122
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.89 E-value=3.1e-09 Score=75.22 Aligned_cols=53 Identities=42% Similarity=0.617 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEEecCCC-cEEEEEecCHHHHHHHH-HcCCceecCceeEEeC
Q 009052 262 VATFFSQVMAAIGGNTAGPGDAVVNVYINHEK-KFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRR 326 (545)
Q Consensus 262 l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~-g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v~~ 326 (545)
|+++|++||. |..+.+...+ ++|||+|.+.++|..|+ .|||..+.|++|+|.+
T Consensus 1 L~~~f~~fG~------------V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGE------------VKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-------------EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCccc------------EEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 6789999996 6666666666 99999999999999999 8999999999999976
No 123
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=9.4e-09 Score=101.57 Aligned_cols=177 Identities=16% Similarity=0.177 Sum_probs=114.5
Q ss_pred hhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 240 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 240 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
.......+|+|-|||..+++++|..+|+.||+|.++. .+....|.+||+|.++-+|+.|+ +|++..|.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir-----------~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR-----------ETPNKRGIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhh-----------cccccCceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 4456778999999999999999999999999876532 34456899999999999999999 99999999
Q ss_pred CceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCC--CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEE
Q 009052 319 GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEG--PDRIFVGGLPYYFTEAQIRELLESFGPLRGFD 396 (545)
Q Consensus 319 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~ 396 (545)
|+.|+- +.....+.....+ ..-+. ..+. +-......+ ...+++- |++.....-+...|+-+|.+.. .
T Consensus 139 ~~~~k~--~~~~~~~~~~~~~----~~~~~--~~~~-p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~ 207 (549)
T KOG4660|consen 139 GKRIKR--PGGARRAMGLQSG----TSFLN--HFGS-PLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-R 207 (549)
T ss_pred hhhhcC--CCcccccchhccc----chhhh--hccc-hhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-c
Confidence 999982 1111111000000 00000 0000 000001111 1123332 8888888667777777887765 3
Q ss_pred EeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 397 LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 397 i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
. ++.-...-|++|.+..++..++..+ |..+.+....++++..
T Consensus 208 ~-----~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 208 E-----TPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred c-----ccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 2 2222336789999988886666544 7777777777777644
No 124
>smart00361 RRM_1 RNA recognition motif.
Probab=98.82 E-value=4.7e-09 Score=77.98 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=48.7
Q ss_pred HHHHHHHHH----HHHHhhcCCCCCCCCcEEEEEe--cCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 259 EQSVATFFS----QVMAAIGGNTAGPGDAVVNVYI--NHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 259 e~~l~~~f~----~~G~i~~~~~~~~~~~v~~~~~--~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
+++|+++|. .||.|..+. .++++..+ +.++|||||+|.+.++|.+|+ .|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~-----~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKIN-----KIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEE-----EEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999875431 01222223 678999999999999999999 89999999999976
No 125
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=9.2e-09 Score=95.54 Aligned_cols=78 Identities=23% Similarity=0.378 Sum_probs=69.3
Q ss_pred hhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH--HcCCcee
Q 009052 240 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM--ALDGIIF 317 (545)
Q Consensus 240 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~--~l~g~~~ 317 (545)
...+...+|||+||-..++|.+|+++|.+||. |..+.+...+++|||+|.+.++|+.|. .++...|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGe------------irsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI 290 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGE------------IRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVI 290 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCC------------eeeEEeecccccceeeehhhHHHHHHHHhhcceeee
Confidence 34566789999999999999999999999996 556666777899999999999999999 6888889
Q ss_pred cCceeEEeCCCC
Q 009052 318 EGAPVKVRRPSD 329 (545)
Q Consensus 318 ~g~~l~v~~~~~ 329 (545)
.|+.|+|.|...
T Consensus 291 ~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 291 NGFRLKIKWGRP 302 (377)
T ss_pred cceEEEEEeCCC
Confidence 999999999876
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.78 E-value=4.2e-08 Score=96.41 Aligned_cols=82 Identities=15% Similarity=0.346 Sum_probs=74.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
..+|+|.+|...+-..+|+.+|++||+|+..+|+.+.-+--.+.|+||++.+.++|.+||+.||...|.|++|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 35799999999999999999999999999999998865555688999999999999999999999999999999999865
Q ss_pred CC
Q 009052 445 GA 446 (545)
Q Consensus 445 ~~ 446 (545)
..
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 54
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=2.8e-08 Score=92.42 Aligned_cols=73 Identities=21% Similarity=0.446 Sum_probs=66.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHH-hCCCccCCeEEEEEEcCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA-LNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~-l~g~~~~g~~l~v~~a~~ 444 (545)
.+|||++|-..+++.+|.+.|.+||.|.+|.+... +++|||+|.+.+.|+.|.+. +|...|+|..|+|.|...
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 58999999999999999999999999999999876 67999999999999988765 467788999999999977
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.71 E-value=1.7e-08 Score=94.97 Aligned_cols=182 Identities=15% Similarity=0.066 Sum_probs=122.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCceeEEeC
Q 009052 247 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRR 326 (545)
Q Consensus 247 ~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l~v~~ 326 (545)
.|.|.||.+.+|.++++.+|...|.|-.+.+... +.++.+......|||.|.+...+..|..|.++.|-++.|.|..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~---~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPN---VDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCC---CCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 6999999999999999999999999887764432 3344555567899999999999999999999999898887754
Q ss_pred CCCCC-CCc-c------ccCCCCCCCC--------------CcccccccCCCCC-----CCCCCCCCeEEEcCCCCCCCH
Q 009052 327 PSDYN-PSL-A------ATLGPSQPNP--------------NLNLAAVGLTPGS-----AGGLEGPDRIFVGGLPYYFTE 379 (545)
Q Consensus 327 ~~~~~-~~~-~------~~~~~~~~~~--------------~~~~~~~~~~~~~-----~~~~~~~~~l~v~nlp~~~~~ 379 (545)
.-+.. +.. + ....+....+ ....+....+.-. ....+...+|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 32221 111 0 0000000000 0000001110000 000111257999999999999
Q ss_pred HHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeE
Q 009052 380 AQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKT 436 (545)
Q Consensus 380 ~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~ 436 (545)
.++.++|..+|.|....+.-. ...-+|-|+|........|+ .++|+.+.-+.
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~hal-r~~gre~k~qh 217 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHAL-RSHGRERKRQH 217 (479)
T ss_pred hhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHH-Hhcchhhhhhh
Confidence 999999999999988776533 33557789999888888888 56788876333
No 129
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.3e-08 Score=94.46 Aligned_cols=80 Identities=15% Similarity=0.334 Sum_probs=75.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+...|||--|.|-+|.+||.-+|+.||.|.+|. +|.+..++.+-.||||+|.+.+++++|. +|++..|..+.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sce------VIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCE------VIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeee------EEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 4678999999999999999999999999999987 7888899999999999999999999999 99999999999
Q ss_pred eEEeCCC
Q 009052 322 VKVRRPS 328 (545)
Q Consensus 322 l~v~~~~ 328 (545)
|+|.+..
T Consensus 311 IHVDFSQ 317 (479)
T KOG0415|consen 311 IHVDFSQ 317 (479)
T ss_pred EEeehhh
Confidence 9998754
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.70 E-value=7.5e-08 Score=87.91 Aligned_cols=83 Identities=22% Similarity=0.407 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
+.+|+|.|||+.|+++||+++|..||.++.+.|..+ ..|.+.|+|-|.|...++|.+|++.+||..++|+.|.+.....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 457999999999999999999999999999999998 4899999999999999999999999999999999999998865
Q ss_pred CCCC
Q 009052 445 GANQ 448 (545)
Q Consensus 445 ~~~~ 448 (545)
....
T Consensus 162 ~~~~ 165 (243)
T KOG0533|consen 162 PSQS 165 (243)
T ss_pred cccc
Confidence 5543
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.68 E-value=4.9e-08 Score=95.97 Aligned_cols=83 Identities=22% Similarity=0.398 Sum_probs=74.3
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
....+.|||.+|...+-..||+.+|++||.|++++ +|.+..+.-.+.|+||.+.+.++|.+|| .|+.+.|.|+
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAK------VVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr 475 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAK------VVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR 475 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceecee------eeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce
Confidence 45678999999999999999999999999999887 6666667777899999999999999999 9999999999
Q ss_pred eeEEeCCCCC
Q 009052 321 PVKVRRPSDY 330 (545)
Q Consensus 321 ~l~v~~~~~~ 330 (545)
.|.|..++..
T Consensus 476 mISVEkaKNE 485 (940)
T KOG4661|consen 476 MISVEKAKNE 485 (940)
T ss_pred eeeeeecccC
Confidence 9999877643
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=8.7e-10 Score=113.64 Aligned_cols=212 Identities=13% Similarity=0.094 Sum_probs=150.8
Q ss_pred ccceEEEcCCCCCCCHH-HHHHHHHHHHHhhcCCCCCCCCcEEEEEec-CCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 244 HARRVYVGGLPPTANEQ-SVATFFSQVMAAIGGNTAGPGDAVVNVYIN-HEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~-~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
....+++.++.+..... .....|..+|.|..++.+.. ... ....++++++....+++.|....+..+.++.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~-------g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~ 642 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKR-------GFKAHEQPQQQKVQSKHGSAESATVPAGGALANRS 642 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccc-------cccccccchhhhhhccccchhhcccccccccCCcc
Confidence 44567788888877555 67889999998766552221 111 1234899999999999999988888888888
Q ss_pred eEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecC
Q 009052 322 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR 401 (545)
Q Consensus 322 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~ 401 (545)
+.|..+........ ... .........++||.||+..+.+++|...|..+|.+..+.+....
T Consensus 643 ~av~~ad~~~~~~~-----~kv--------------s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~ 703 (881)
T KOG0128|consen 643 AAVGLADAEEKEEN-----FKV--------------SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHK 703 (881)
T ss_pred ccCCCCCchhhhhc-----cCc--------------CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHh
Confidence 77765432220000 000 00000111369999999999999999999999999888887666
Q ss_pred CCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeE
Q 009052 402 ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVV 481 (545)
Q Consensus 402 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (545)
..+..+|+|||+|...++|.+|+....+..++...|.
T Consensus 704 n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~------------------------------------------- 740 (881)
T KOG0128|consen 704 NEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVA------------------------------------------- 740 (881)
T ss_pred hccccccceeeEeecCCchhhhhhhhhhhhhhhhhhh-------------------------------------------
Confidence 6788899999999999999999976666555522221
Q ss_pred EecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee--------cCCceEEEEeCCCCCcC
Q 009052 482 CLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT--------FCYKESGLIYTDRRLHN 535 (545)
Q Consensus 482 ~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v--------~~~g~afV~F~~~e~A~ 535 (545)
|.|. ++..+.+.++.+|.++|.++++ ..+|.|||.|.+..+|.
T Consensus 741 -i~g~----------pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s 791 (881)
T KOG0128|consen 741 -ISGP----------PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADAS 791 (881)
T ss_pred -eeCC----------CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhh
Confidence 1111 1112234889999999999999 67899999999999883
No 133
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.60 E-value=4.1e-07 Score=70.76 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=68.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHh--cCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccC----CeEEEE
Q 009052 366 DRIFVGGLPYYFTEAQIRELLES--FGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG----DKTLTV 439 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~----g~~l~v 439 (545)
++|+|+|||...+.++|.+++.. .|...-+.++.|..++.+.|||||.|.+++.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 48999999999999999998876 455777788888778999999999999999999999999999874 678888
Q ss_pred EEcC
Q 009052 440 RRAN 443 (545)
Q Consensus 440 ~~a~ 443 (545)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8883
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=6.4e-08 Score=95.78 Aligned_cols=68 Identities=19% Similarity=0.364 Sum_probs=63.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEE
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 438 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~ 438 (545)
.+|+|-|||..|++++|..+|+.||.|..|+.-.. ..|.+||+|.++-+|+.|+++|++..|.|+.|+
T Consensus 76 ~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 76 GTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 47999999999999999999999999999776444 489999999999999999999999999999998
No 135
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.55 E-value=6e-08 Score=83.93 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=64.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHH-HHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQV-MAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~-G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
....-+||..+|..+.+.+|..+|.+| |.+..+. ...+..+|.++|||||+|.+++.|.-|. .||+..|.|+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~r------lsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFR------LSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEE------eecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 345579999999999999999999999 4443322 2244567899999999999999999999 9999999999
Q ss_pred eeEEeC
Q 009052 321 PVKVRR 326 (545)
Q Consensus 321 ~l~v~~ 326 (545)
-|.+..
T Consensus 121 lL~c~v 126 (214)
T KOG4208|consen 121 LLECHV 126 (214)
T ss_pred eeeeEE
Confidence 888865
No 136
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.52 E-value=3.1e-06 Score=85.69 Aligned_cols=76 Identities=16% Similarity=0.315 Sum_probs=67.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
+.|-+.|+|+.++-+||.++|..|-.+-.-.+++..+.|...|-|.|-|++.++|..|...|++..|.+++|.+..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4799999999999999999999998765544444447899999999999999999999999999999999998864
No 137
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.46 E-value=2.4e-07 Score=85.08 Aligned_cols=80 Identities=21% Similarity=0.419 Sum_probs=74.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
...++|+|+...++.++|...|+.||.|..|.|+.+...|.++|||||+|.+.+.+..|+. |+|..|.|+.+.|.+..-
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 3589999999999999999999999999999999998888899999999999999999996 999999999999998743
Q ss_pred C
Q 009052 445 G 445 (545)
Q Consensus 445 ~ 445 (545)
.
T Consensus 180 ~ 180 (231)
T KOG4209|consen 180 N 180 (231)
T ss_pred e
Confidence 3
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=1.2e-07 Score=82.52 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=72.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
.+|||.||-..++|+-|.++|-+.|+|..|.|+.++ .++.+ ||||.|.++-...-|++.|||..+.+..|.|++-...
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 589999999999999999999999999999999884 66666 9999999999999999999999999999999986544
Q ss_pred C
Q 009052 446 A 446 (545)
Q Consensus 446 ~ 446 (545)
.
T Consensus 88 s 88 (267)
T KOG4454|consen 88 S 88 (267)
T ss_pred C
Confidence 3
No 139
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.37 E-value=1.3e-06 Score=88.55 Aligned_cols=83 Identities=17% Similarity=0.288 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCC---CCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE---TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
.++|||+||++.++++.|...|..||+|..|+|+.... ......||||-|-+-.+|.+|++.|+|..+.+..+++.|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 35699999999999999999999999999999987642 334567999999999999999999999999999999999
Q ss_pred cCCCCC
Q 009052 442 ANQGAN 447 (545)
Q Consensus 442 a~~~~~ 447 (545)
+..-..
T Consensus 254 gk~V~i 259 (877)
T KOG0151|consen 254 GKAVPI 259 (877)
T ss_pred cccccc
Confidence 955543
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.35 E-value=3.7e-06 Score=76.94 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=66.9
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
.....+|+|.|||+.++++||+++|..||.+..+ .|-.-..+.+.|.|-|.|...++|..|+ .+++..+.|+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~-------~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~ 152 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRV-------AVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGR 152 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEE-------eeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCc
Confidence 3445789999999999999999999999865322 1223345677899999999999999999 9999999999
Q ss_pred eeEEeCCCCC
Q 009052 321 PVKVRRPSDY 330 (545)
Q Consensus 321 ~l~v~~~~~~ 330 (545)
+|++......
T Consensus 153 ~mk~~~i~~~ 162 (243)
T KOG0533|consen 153 PMKIEIISSP 162 (243)
T ss_pred eeeeEEecCc
Confidence 9998765443
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.35 E-value=1.4e-06 Score=86.33 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=63.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEE-ecCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY-INHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~-~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
....+|||+|||+++++.+|.++|..||+|+... |.... -+....||||+|.+.++++.|+..+...|++++
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~-------I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~k 358 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGG-------IQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRK 358 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccc-------eEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCee
Confidence 4456699999999999999999999999987643 22221 244458999999999999999977788899999
Q ss_pred eEEeC
Q 009052 322 VKVRR 326 (545)
Q Consensus 322 l~v~~ 326 (545)
|.|..
T Consensus 359 l~Vee 363 (419)
T KOG0116|consen 359 LNVEE 363 (419)
T ss_pred EEEEe
Confidence 99964
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.29 E-value=2.6e-06 Score=66.31 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=60.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec----Cc
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE----GA 320 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~----g~ 320 (545)
+||+|+|||...|.++|.+++.... .+.. .-.-..++..+..+.|||||.|.+++.|.... .++|..+. .+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~--~g~y--DF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF--KGKY--DFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc--cCcc--eEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCc
Confidence 5899999999999999999998762 1111 00113455566778999999999999999999 89998885 35
Q ss_pred eeEEeCCC
Q 009052 321 PVKVRRPS 328 (545)
Q Consensus 321 ~l~v~~~~ 328 (545)
.+.|.+|.
T Consensus 78 vc~i~yAr 85 (97)
T PF04059_consen 78 VCEISYAR 85 (97)
T ss_pred EEEEehhH
Confidence 56666654
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.25 E-value=2e-06 Score=87.38 Aligned_cols=80 Identities=21% Similarity=0.325 Sum_probs=67.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe----cCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI----NHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~----~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
..+.|||+||++.++++.|...|..||+|.+++ |+-..+ ...+.||||.|.+..+|+.|+ .|+|+.+.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvK-------imwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVK-------IMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCccccee-------eecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 345799999999999999999999999987765 333322 234679999999999999999 99999999
Q ss_pred CceeEEeCCCCC
Q 009052 319 GAPVKVRRPSDY 330 (545)
Q Consensus 319 g~~l~v~~~~~~ 330 (545)
+..+++.|.+.-
T Consensus 246 ~~e~K~gWgk~V 257 (877)
T KOG0151|consen 246 EYEMKLGWGKAV 257 (877)
T ss_pred eeeeeecccccc
Confidence 999999998543
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.25 E-value=4.4e-06 Score=61.54 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=48.0
Q ss_pred eEEEcCCCCCCCHHH----HHHHHHhcCC-ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 367 RIFVGGLPYYFTEAQ----IRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~----l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
.|+|.|||...+... |+.++..+|. |..|. .+.|+|.|.+.+.|..|.+.|+|..+.|..|.|+|
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 699999999988765 4566677875 65552 45899999999999999999999999999999999
Q ss_pred cCCCC
Q 009052 442 ANQGA 446 (545)
Q Consensus 442 a~~~~ 446 (545)
.....
T Consensus 74 ~~~~r 78 (90)
T PF11608_consen 74 SPKNR 78 (90)
T ss_dssp S--S-
T ss_pred cCCcc
Confidence 84443
No 145
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.22 E-value=9.5e-08 Score=90.80 Aligned_cols=154 Identities=19% Similarity=0.344 Sum_probs=120.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCc-eecCceeE
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGI-IFEGAPVK 323 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~-~~~g~~l~ 323 (545)
.+||++||.+.++..+|..+|... ++...+ .+....|||||.+.+..-|.+|+ .++|. .+.|+.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~a------k~~~~g------~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA------KIPGSG------QFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc------cCCCCc------ceeeecceeeccCCchhhhhhhHHhhchhhhhcCceee
Confidence 469999999999999999999865 211222 22234699999999999999999 78875 58999988
Q ss_pred EeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCC
Q 009052 324 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 403 (545)
Q Consensus 324 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~ 403 (545)
|...-... ...+++.|.|+|+...++.|..++..||.++.|.....
T Consensus 70 ~~~sv~kk-------------------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt--- 115 (584)
T KOG2193|consen 70 VEHSVPKK-------------------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT--- 115 (584)
T ss_pred ccchhhHH-------------------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---
Confidence 86432111 11236899999999999999999999999999876432
Q ss_pred CCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 404 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 404 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
..-.-..-|+|.+.+.+..||..|+|..|.+..++|.|....
T Consensus 116 ~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 116 DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 111223458899999999999999999999999999997443
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.22 E-value=2.7e-06 Score=84.36 Aligned_cols=78 Identities=23% Similarity=0.426 Sum_probs=66.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
..|||.|||.+++..+|+++|..||.|+...|......+...+||||+|.+.++++.||.+ +-..|+++.|.|.--..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 4599999999999999999999999999988766432344448999999999999999966 57889999999987644
No 147
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.07 E-value=8.9e-06 Score=74.03 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=59.9
Q ss_pred eEEEcCC--CCCCC---HHHHHHHHHhcCCccEEEEeecCCCCCcc-eEEEEEecChHHHHHHHHHhCCCccCCeEEEEE
Q 009052 367 RIFVGGL--PYYFT---EAQIRELLESFGPLRGFDLVKDRETGNSK-GYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 440 (545)
Q Consensus 367 ~l~v~nl--p~~~~---~~~l~~~f~~~G~i~~v~i~~~~~~g~~~-g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~ 440 (545)
.|.+.|+ +..+. ++++++.|++||+|..|.|...+..-... --.||+|..+++|.+|+..|||++|+|+.+...
T Consensus 283 vlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 283 VLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred HHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 3566666 33343 46899999999999999887664222111 238999999999999999999999999999999
Q ss_pred EcC
Q 009052 441 RAN 443 (545)
Q Consensus 441 ~a~ 443 (545)
|.+
T Consensus 363 Fyn 365 (378)
T KOG1996|consen 363 FYN 365 (378)
T ss_pred ecc
Confidence 874
No 148
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.03 E-value=5.8e-06 Score=73.93 Aligned_cols=77 Identities=21% Similarity=0.394 Sum_probs=69.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
..-+||-+.|..+++.+.|...|.+|=.....+ +|.+..+++++||+||-|.++.++..|| +|+|..++.++|
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~ak------viRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAK------VIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhcc------ccccccccccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 557999999999999999999999996655544 7889999999999999999999999999 999999999999
Q ss_pred EEeC
Q 009052 323 KVRR 326 (545)
Q Consensus 323 ~v~~ 326 (545)
++..
T Consensus 263 klRk 266 (290)
T KOG0226|consen 263 KLRK 266 (290)
T ss_pred Hhhh
Confidence 9864
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.03 E-value=3e-06 Score=77.89 Aligned_cols=85 Identities=24% Similarity=0.275 Sum_probs=71.4
Q ss_pred hhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecC
Q 009052 240 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEG 319 (545)
Q Consensus 240 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g 319 (545)
+.......|||+|+.+.+|.++|...|+.||.|..+. +..+...+..+|||||+|.+.+.+..|+.|++..|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~t------i~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~ 169 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVT------VPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPG 169 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCcccee------eeccccCCCcceeEEEecccHhhhHHHhhcCCccccc
Confidence 4566778999999999999999999999999875433 3344445578999999999999999999999999999
Q ss_pred ceeEEeCCCCC
Q 009052 320 APVKVRRPSDY 330 (545)
Q Consensus 320 ~~l~v~~~~~~ 330 (545)
..+.|.+....
T Consensus 170 ~~i~vt~~r~~ 180 (231)
T KOG4209|consen 170 PAIEVTLKRTN 180 (231)
T ss_pred ccceeeeeeee
Confidence 99999765443
No 150
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.03 E-value=2.5e-06 Score=89.09 Aligned_cols=133 Identities=16% Similarity=0.189 Sum_probs=102.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
..+||++||+..+++.+|...|..+|.|..|.|-.... +....||||.|.+...+-.|+..+.+..|....+.+.+...
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ 450 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP 450 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccccc
Confidence 35899999999999999999999999999999876632 23345899999999999999999999998877777777633
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee---cCC
Q 009052 445 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT---FCY 521 (545)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v---~~~ 521 (545)
+. .+++-+++..+... +. ...|..+|..||.|..| .+.
T Consensus 451 ks-----------------------------t~ttr~~sgglg~w---~p-------~~~l~r~fd~fGpir~Idy~hgq 491 (975)
T KOG0112|consen 451 KS-----------------------------TPTTRLQSGGLGPW---SP-------VSRLNREFDRFGPIRIIDYRHGQ 491 (975)
T ss_pred cc-----------------------------ccceeeccCCCCCC---Ch-------HHHHHHHhhccCcceeeecccCC
Confidence 21 12222333322111 11 12788899999999999 888
Q ss_pred ceEEEEeCCCCCcCcc
Q 009052 522 KESGLIYTDRRLHNPQ 537 (545)
Q Consensus 522 g~afV~F~~~e~A~a~ 537 (545)
-+|||.|.+...|.++
T Consensus 492 ~yayi~yes~~~aq~a 507 (975)
T KOG0112|consen 492 PYAYIQYESPPAAQAA 507 (975)
T ss_pred cceeeecccCccchhh
Confidence 9999999999988655
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.01 E-value=4.7e-06 Score=78.66 Aligned_cols=81 Identities=26% Similarity=0.380 Sum_probs=74.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcc--------EEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEE
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLR--------GFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 437 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l 437 (545)
.+|||-+||..+++.+|.++|.++|.|. .|.|.++++|+.+||-|.|.|.+...|+.|+..+++..|.|.+|
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~i 146 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTI 146 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCc
Confidence 4799999999999999999999999875 36778888999999999999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 009052 438 TVRRANQGA 446 (545)
Q Consensus 438 ~v~~a~~~~ 446 (545)
+|.+|...+
T Consensus 147 kvs~a~~r~ 155 (351)
T KOG1995|consen 147 KVSLAERRT 155 (351)
T ss_pred hhhhhhhcc
Confidence 999985554
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.93 E-value=7.8e-05 Score=55.06 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=48.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
..|+|.|||.+.+...|..-+.+.-.= .|+.|+.+ ..+.|+|.|.+.+.|..|. .|+|..+.|..|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdN-------CGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDN-------CGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHT-------TT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhc-------cCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 369999999999988877766655332 12357766 3689999999999999999 89999999999999
Q ss_pred eCCC
Q 009052 325 RRPS 328 (545)
Q Consensus 325 ~~~~ 328 (545)
.+..
T Consensus 72 ~~~~ 75 (90)
T PF11608_consen 72 SFSP 75 (90)
T ss_dssp ESS-
T ss_pred EEcC
Confidence 8863
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.93 E-value=1.4e-05 Score=63.93 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=44.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhC-----CCccCCeEEEEE
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN-----GIKMGDKTLTVR 440 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~-----g~~~~g~~l~v~ 440 (545)
+.|+|.+++..++.++|+++|+.||.|..|.+... ...|||.|.+.+.|+.|+..+. +..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 37899999999999999999999999999988765 3379999999999999998774 345667666665
Q ss_pred Ec
Q 009052 441 RA 442 (545)
Q Consensus 441 ~a 442 (545)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.65 E-value=4.8e-05 Score=71.99 Aligned_cols=89 Identities=21% Similarity=0.198 Sum_probs=72.5
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCC--CCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAG--PGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~--~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
....-+|||.+||..+++++|.++|.++|.|.--+-.. .+.+-.+..+...|+-|.|.|.++..|+.|+ -+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34556899999999999999999999999886544321 1223445567888999999999999999999 89999999
Q ss_pred CceeEEeCCCCC
Q 009052 319 GAPVKVRRPSDY 330 (545)
Q Consensus 319 g~~l~v~~~~~~ 330 (545)
+.+|+|..+...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999766543
No 155
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00018 Score=71.61 Aligned_cols=76 Identities=25% Similarity=0.403 Sum_probs=62.9
Q ss_pred CeEEEcCCCCCCC------HHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccC-CeEEE
Q 009052 366 DRIFVGGLPYYFT------EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG-DKTLT 438 (545)
Q Consensus 366 ~~l~v~nlp~~~~------~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~-g~~l~ 438 (545)
..|+|.|+|.--. ..-|.++|+++|+|+.+.++.+..+| .+||.|++|.+..+|+.|++.|||..|. +++..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 4799999986432 24667899999999999999886555 8999999999999999999999999884 56677
Q ss_pred EEEc
Q 009052 439 VRRA 442 (545)
Q Consensus 439 v~~a 442 (545)
|..-
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 6543
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.62 E-value=0.00012 Score=68.12 Aligned_cols=80 Identities=15% Similarity=0.283 Sum_probs=63.1
Q ss_pred eEEEcCCCCCCCHHHH------HHHHHhcCCccEEEEeecCCCCCc-ce-E-EEEEecChHHHHHHHHHhCCCccCCeEE
Q 009052 367 RIFVGGLPYYFTEAQI------RELLESFGPLRGFDLVKDRETGNS-KG-Y-AFCVYQDLSVTDIACAALNGIKMGDKTL 437 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l------~~~f~~~G~i~~v~i~~~~~~g~~-~g-~-afV~f~~~e~A~~A~~~l~g~~~~g~~l 437 (545)
-+||-+||+.+..+++ .++|.+||+|..|.|-+......+ .+ + .||.|.+.|+|..||...+|..++|+.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 5899999888776652 478999999999988665311111 12 2 4999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 009052 438 TVRRANQGA 446 (545)
Q Consensus 438 ~v~~a~~~~ 446 (545)
+..|...+.
T Consensus 196 katYGTTKY 204 (480)
T COG5175 196 KATYGTTKY 204 (480)
T ss_pred eeecCchHH
Confidence 999975443
No 157
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.0002 Score=70.92 Aligned_cols=156 Identities=21% Similarity=0.305 Sum_probs=94.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCC---CCCcce---EEEEEecChHHHHHHHHHhCCCccCCeEEE
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE---TGNSKG---YAFCVYQDLSVTDIACAALNGIKMGDKTLT 438 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~---~g~~~g---~afV~f~~~e~A~~A~~~l~g~~~~g~~l~ 438 (545)
..+|||++||..++|+.|...|..||.+. |..+.... .--++| |+|+-|+++...+.-|.++. ++...+.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~---~~~~~~y 334 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS---EGEGNYY 334 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---hcccceE
Confidence 46899999999999999999999999863 44442111 112455 99999999888776665543 2333333
Q ss_pred EEEcCCCC----CCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHh-ccC
Q 009052 439 VRRANQGA----NQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGG-KFA 513 (545)
Q Consensus 439 v~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~-~fG 513 (545)
+..+.+.. .+..+..... ....+ .......+.++|+|..+ +--|+- ++|..+|+ -||
T Consensus 335 f~vss~~~k~k~VQIrPW~laD-----s~fv~---d~sq~lDprrTVFVGgv--prpl~A--------~eLA~imd~lyG 396 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLAD-----SDFVL---DHNQPIDPRRTVFVGGL--PRPLTA--------EELAMIMEDLFG 396 (520)
T ss_pred EEEecCcccccceeEEeeEecc-----chhhh---ccCcccCccceEEecCC--CCcchH--------HHHHHHHHHhcC
Confidence 32221111 1111111000 00000 12234567778888776 222222 27777787 799
Q ss_pred Cceee---------cCCceEEEEeCCCCCc----Cccccccc
Q 009052 514 FCSPT---------FCYKESGLIYTDRRLH----NPQFVYFY 542 (545)
Q Consensus 514 ~V~~v---------~~~g~afV~F~~~e~A----~a~~~~~~ 542 (545)
.|.-+ -.+|-+=|.|.+-++= .|+|+.+.
T Consensus 397 gV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~ 438 (520)
T KOG0129|consen 397 GVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLD 438 (520)
T ss_pred ceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEe
Confidence 99998 4678888999886653 66666654
No 158
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.57 E-value=4e-05 Score=69.11 Aligned_cols=64 Identities=11% Similarity=0.212 Sum_probs=54.0
Q ss_pred HHHHHHHH-hcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 380 AQIRELLE-SFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 380 ~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
++|...|+ +||.|+.+.|..+- .-.-.|-+||.|...++|++|++.|||.+|+|++|...++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 56666777 89999999877652 233478899999999999999999999999999999999843
No 159
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.53 E-value=4.4e-05 Score=69.61 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=52.0
Q ss_pred CCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee----------cCCceEEEEeCCCCCcCccccccc
Q 009052 475 SVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT----------FCYKESGLIYTDRRLHNPQFVYFY 542 (545)
Q Consensus 475 ~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v----------~~~g~afV~F~~~e~A~a~~~~~~ 542 (545)
..+++||.|.|+|...+..++ ++++++++|++||+|..| ...-.+||+|...++|.+||++.-
T Consensus 278 ~~ptkvlllrnmVg~gevd~e-----lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdln 350 (378)
T KOG1996|consen 278 KCPTKVLLLRNMVGAGEVDEE-----LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLN 350 (378)
T ss_pred hcchHHHHhhhhcCcccccHH-----HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcC
Confidence 467889999999998876543 566899999999999988 234568999999999998888653
No 160
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.52 E-value=5.4e-05 Score=72.22 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=105.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
..++|++++...+.+.++..++..+|.+....+........++|+++|.|...+.+..||.......+.+..+...+...
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 45799999999999998999999999988887777656788899999999999999999944333466666666555433
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee------
Q 009052 445 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------ 518 (545)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v------ 518 (545)
....+.. .........+..++.+.++ ..++.. ++|+.+|..+|.|+.+
T Consensus 168 ~~~~~~n----------------~~~~~~~~~s~~~~~~~~~--~f~~~~--------d~~~~~~~~~~~i~~~r~~~~~ 221 (285)
T KOG4210|consen 168 RGLRPKN----------------KLSRLSSGPSDTIFFVGEL--DFSLTR--------DDLKEHFVSSGEITSVRLPTDE 221 (285)
T ss_pred ccccccc----------------hhcccccCccccceeeccc--ccccch--------HHHhhhccCcCcceeeccCCCC
Confidence 2211100 0001112233333434444 223333 3788999999999999
Q ss_pred ---cCCceEEEEeCCCCCcCcccc
Q 009052 519 ---FCYKESGLIYTDRRLHNPQFV 539 (545)
Q Consensus 519 ---~~~g~afV~F~~~e~A~a~~~ 539 (545)
.+.|++||.|.....+..+++
T Consensus 222 ~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 222 ESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred CccchhhhhhhhhhhchhHHHHhh
Confidence 678999999999999988877
No 161
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.49 E-value=0.00025 Score=63.86 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=81.6
Q ss_pred HHHHHH-HcCCceecCceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHH
Q 009052 305 EASNAM-ALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIR 383 (545)
Q Consensus 305 ~A~~a~-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~ 383 (545)
-|..|. +|++....|+.|.|.++.. ..|+|.||...+..+.+.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------a~l~V~nl~~~~sndll~ 49 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------------------------AELYVVNLMQGASNDLLE 49 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------------------------ceEEEEecchhhhhHHHH
Confidence 356666 7899999999999988543 269999999999999999
Q ss_pred HHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCC----ccCCeEEEEEE
Q 009052 384 ELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI----KMGDKTLTVRR 441 (545)
Q Consensus 384 ~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~----~~~g~~l~v~~ 441 (545)
+.|+.||.|....++.| ..+...+-++|+|...-.|.+|+..++-. ...+..+.|..
T Consensus 50 ~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 50 QAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred HhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 99999999998887777 57888899999999999999999887422 23455555543
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.38 E-value=0.00037 Score=47.98 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=42.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHH
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 424 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~ 424 (545)
+.|.|.+.+.... +.|...|..||.|+.+.+... ...+||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 4688999987755 455568999999999988633 458999999999999985
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.33 E-value=0.00054 Score=47.19 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=43.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM 310 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~ 310 (545)
+.|-|.|.+++..+. |..+|..||+ |.++.......++||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGe------------I~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGE------------IVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCC------------EEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 578899999887755 5568899996 666777778899999999999999986
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.32 E-value=0.0011 Score=52.21 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=51.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEE-EeecC------CCCCcceEEEEEecChHHHHHHHHHhCCCccCCe-EE
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFD-LVKDR------ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK-TL 437 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~-i~~~~------~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~-~l 437 (545)
..|.|-+.|+. ....|.+.|++||.|++.. +..+. ..........|+|.+..+|.+|| ..||..|+|. .+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEEE
Confidence 46888899988 6677889999999988775 11100 00112458999999999999999 6699999885 55
Q ss_pred EEEEc
Q 009052 438 TVRRA 442 (545)
Q Consensus 438 ~v~~a 442 (545)
-|.++
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 58887
No 165
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.28 E-value=0.00053 Score=64.25 Aligned_cols=78 Identities=27% Similarity=0.387 Sum_probs=69.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCC--ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGP--LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~--i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
.++||+||-+.+|++||.+.+...|. +.++++..+..+|.+||||+|-..+....++.++.|-...|.|+.-.|.-++
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 36999999999999999999998875 7778888888899999999999999999999999999999999887776663
No 166
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.28 E-value=0.00055 Score=54.81 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=42.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-Hc--C---CceecC
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-AL--D---GIIFEG 319 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l--~---g~~~~g 319 (545)
+.|.|.|++..++-++|+++|+.||. |..|.+......|||.|.+++.|+.|+ .+ . +..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~------------V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~ 69 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGE------------VAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKG 69 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--------------EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTS
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCC------------cceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcC
Confidence 46899999999999999999999995 666777777789999999999999999 43 2 345566
Q ss_pred ceeEEe
Q 009052 320 APVKVR 325 (545)
Q Consensus 320 ~~l~v~ 325 (545)
..+.+.
T Consensus 70 ~~~~~~ 75 (105)
T PF08777_consen 70 KEVTLE 75 (105)
T ss_dssp SSEEEE
T ss_pred ceEEEE
Confidence 655553
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.23 E-value=0.00089 Score=52.67 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=51.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCC-CCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGP-GDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~-~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l 322 (545)
..+.|.|-|.|+. ....|.+.|++||.|+....... ..-+.........+...|.|.++.+|.+||..||..|.|.-|
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 4567999999998 56779999999998543210000 000000023445778999999999999999999999998655
Q ss_pred E-EeC
Q 009052 323 K-VRR 326 (545)
Q Consensus 323 ~-v~~ 326 (545)
- |.+
T Consensus 84 vGV~~ 88 (100)
T PF05172_consen 84 VGVKP 88 (100)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 4 444
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.21 E-value=0.00028 Score=63.57 Aligned_cols=71 Identities=18% Similarity=0.412 Sum_probs=60.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCC--------CCcce----EEEEEecChHHHHHHHHHhCCCccC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET--------GNSKG----YAFCVYQDLSVTDIACAALNGIKMG 433 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~--------g~~~g----~afV~f~~~e~A~~A~~~l~g~~~~ 433 (545)
-.|||++||+.+...-|+++|+.||.|-.|.|.....+ |.+.+ -|+|+|.+...|......|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 37999999999999999999999999999998766444 22222 2789999999999999999999999
Q ss_pred CeE
Q 009052 434 DKT 436 (545)
Q Consensus 434 g~~ 436 (545)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 875
No 169
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.13 E-value=0.0002 Score=69.09 Aligned_cols=72 Identities=24% Similarity=0.231 Sum_probs=60.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCC-------CcEEEEEecCHHHHHHHHHcC
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE-------KKFAFVEMRSVEEASNAMALD 313 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~-------~g~afV~F~~~~~A~~a~~l~ 313 (545)
+-+.++|.+-|||.+-..+.|..+|..+|.|+.+.++.++.+-.++.-... +-+|||+|...+.|.+|.++.
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 347899999999999999999999999999999998888755555544433 568999999999999999544
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.04 E-value=0.00065 Score=65.68 Aligned_cols=67 Identities=19% Similarity=0.323 Sum_probs=56.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeec---CCC--CCc--------ceEEEEEecChHHHHHHHHHhCCC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD---RET--GNS--------KGYAFCVYQDLSVTDIACAALNGI 430 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~---~~~--g~~--------~g~afV~f~~~e~A~~A~~~l~g~ 430 (545)
..++|.+.|||.+-.-+.|.++|+.+|.|..|+|+.. +.+ +.+ +-+|||+|...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 4468999999999999999999999999999999877 332 222 357999999999999999888643
No 171
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.87 E-value=0.0013 Score=66.22 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=62.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh-cCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCcc---CCeEEE
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLES-FGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM---GDKTLT 438 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~---~g~~l~ 438 (545)
..++.|+|.||---+|.-+|+.++.. +|.|+...|-+- +..|||.|.+.++|...+.+|||..+ +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 44568999999988999999999996 555666622221 56899999999999999999999987 789999
Q ss_pred EEEcCC
Q 009052 439 VRRANQ 444 (545)
Q Consensus 439 v~~a~~ 444 (545)
|.|...
T Consensus 516 adf~~~ 521 (718)
T KOG2416|consen 516 ADFVRA 521 (718)
T ss_pred eeecch
Confidence 999743
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.80 E-value=0.0049 Score=51.49 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCC
Q 009052 380 AQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 447 (545)
Q Consensus 380 ~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 447 (545)
.+|.+.|..||.+.-|++.-+ .-+|.|.+-+.|.+|+ .|+|.+++|+.|+|....+...
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE------
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccHH
Confidence 377788899999888877654 5799999999999999 8899999999999999765543
No 173
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.75 E-value=0.0017 Score=60.75 Aligned_cols=76 Identities=25% Similarity=0.424 Sum_probs=57.4
Q ss_pred cceEEEcCCCCCCCHHHH------HHHHHHHHHhhcCCCCCCCCcEEEEEecC---CCcEE--EEEecCHHHHHHHH-Hc
Q 009052 245 ARRVYVGGLPPTANEQSV------ATFFSQVMAAIGGNTAGPGDAVVNVYINH---EKKFA--FVEMRSVEEASNAM-AL 312 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l------~~~f~~~G~i~~~~~~~~~~~v~~~~~~~---~~g~a--fV~F~~~~~A~~a~-~l 312 (545)
..-|||-+||+.+-.+++ .++|.+||.|..+ ++...+.. ..+.+ ||.|.+.++|..|+ +.
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KI--------vvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v 185 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKI--------VVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV 185 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEE--------EecccccccccccccceEEEEecchHHHHHHHHHh
Confidence 446999999998866662 5799999987543 33333311 12333 99999999999999 99
Q ss_pred CCceecCceeEEeCCC
Q 009052 313 DGIIFEGAPVKVRRPS 328 (545)
Q Consensus 313 ~g~~~~g~~l~v~~~~ 328 (545)
+|..+.|+.|+..+..
T Consensus 186 Dgs~~DGr~lkatYGT 201 (480)
T COG5175 186 DGSLLDGRVLKATYGT 201 (480)
T ss_pred ccccccCceEeeecCc
Confidence 9999999999987654
No 174
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.70 E-value=0.016 Score=58.23 Aligned_cols=70 Identities=9% Similarity=0.117 Sum_probs=56.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHh--cCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCC--CccCCeEEEEEE
Q 009052 366 DRIFVGGLPYYFTEAQIRELLES--FGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG--IKMGDKTLTVRR 441 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g--~~~~g~~l~v~~ 441 (545)
|.|+|+.||..+-.|+|+.+|.. +-++.+|.+..+. -=||+|++..||+.|.+.|.- ..|.|+.|....
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 46899999999999999999986 7788888886652 248999999999999988853 457777776654
Q ss_pred c
Q 009052 442 A 442 (545)
Q Consensus 442 a 442 (545)
.
T Consensus 249 K 249 (684)
T KOG2591|consen 249 K 249 (684)
T ss_pred h
Confidence 3
No 175
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.45 E-value=0.0042 Score=60.01 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=68.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCC-ccCCeEEEEEEcCCC
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI-KMGDKTLTVRRANQG 445 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~-~~~g~~l~v~~a~~~ 445 (545)
.||++||.+.++..+|..+|...-.-.+-.++. ..||+||.+.+...|.+|++.++|. .+.|+.+.|.+..++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 689999999999999999998642211112222 2689999999999999999999986 689999999988555
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhcC
Q 009052 446 ANQPKPEQESVLLHAQQQIALQRLMLQ 472 (545)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (545)
.......+............+..+...
T Consensus 77 kqrsrk~Qirnippql~wevld~Ll~q 103 (584)
T KOG2193|consen 77 KQRSRKIQIRNIPPQLQWEVLDSLLAQ 103 (584)
T ss_pred HHHhhhhhHhcCCHHHHHHHHHHHHhc
Confidence 444333333333333333334444433
No 176
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.40 E-value=0.0019 Score=58.37 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=54.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEE--EecCCCc----EEEEEecCHHHHHHHH-HcCCce
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNV--YINHEKK----FAFVEMRSVEEASNAM-ALDGII 316 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~--~~~~~~g----~afV~F~~~~~A~~a~-~l~g~~ 316 (545)
....||+++||+.+...-|+++|+.||.|=.+++.......... .-+.+.+ -|.|+|.+...|..+. .||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 55689999999999999999999999976332211000000000 0011111 2789999999999988 899999
Q ss_pred ecCce
Q 009052 317 FEGAP 321 (545)
Q Consensus 317 ~~g~~ 321 (545)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 177
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.29 E-value=0.019 Score=56.58 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=57.3
Q ss_pred EEEcCCCCCC-CHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCC
Q 009052 368 IFVGGLPYYF-TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 446 (545)
Q Consensus 368 l~v~nlp~~~-~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 446 (545)
|-+.-.|..+ +-++|...|.+||.|..|.|-.. ---|.|+|.+..+|-.|. +.++..|+|+.|+|.|.++..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEecCCc
Confidence 4444445444 45899999999999999998654 235899999999997776 678999999999999987743
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.22 E-value=0.021 Score=42.50 Aligned_cols=53 Identities=17% Similarity=0.375 Sum_probs=40.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhC
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN 428 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~ 428 (545)
..+|. +|..+...||.++|++||.|. |..+.+. -|||...+.+.|..|+..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 45555 999999999999999999884 6666552 69999999999999998875
No 179
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.09 E-value=0.00083 Score=68.70 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=57.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.-+|||+|+...+..+-++.++..+|.|.+++ .+ .|||+.|..+..+..|+ .++...++|..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~k------r~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWK------RD---------KFGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhh------hh---------hhcccchhhHHHHHHHHHHhcccCCCcch
Confidence 3456899999999999999999999999765543 11 19999999999999999 78888888888
Q ss_pred eEEeC
Q 009052 322 VKVRR 326 (545)
Q Consensus 322 l~v~~ 326 (545)
+.+.-
T Consensus 103 l~~~~ 107 (668)
T KOG2253|consen 103 LIENV 107 (668)
T ss_pred hhccc
Confidence 77653
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.03 E-value=0.042 Score=38.77 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=44.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhc---CCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHh
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESF---GPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 427 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l 427 (545)
..|+|.|+.. ++.++|+.+|..| .....|..+-|. -|-|-|.+.+.|.+||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4799999964 7889999999998 135578887773 4789999999999999765
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.96 E-value=0.0046 Score=62.39 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=64.1
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCcee---
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF--- 317 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~--- 317 (545)
...+..|+|.||-.-+|.-+|++++..-|. .|...++.+-+..|||.|.+.++|.... +|+|..|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg-----------~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGG-----------NVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccC-----------chHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 456789999999999999999999996654 2555577777899999999999999999 9999887
Q ss_pred cCceeEEeCCC
Q 009052 318 EGAPVKVRRPS 328 (545)
Q Consensus 318 ~g~~l~v~~~~ 328 (545)
+++.|.+.|..
T Consensus 510 NPK~L~adf~~ 520 (718)
T KOG2416|consen 510 NPKHLIADFVR 520 (718)
T ss_pred CCceeEeeecc
Confidence 56788887654
No 182
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.91 E-value=0.012 Score=55.33 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=58.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHh--hcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAA--IGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i--~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..-.+||+||-|.+|++||.+.+...|-- ..++ -..+...+.+||||+|...+..+.++.| -|-...|.|+
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmK------FFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMK------FFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhh------hhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 34579999999999999999999887732 2222 2344456889999999999999999999 6777788887
Q ss_pred eeEE
Q 009052 321 PVKV 324 (545)
Q Consensus 321 ~l~v 324 (545)
.-.|
T Consensus 153 ~P~V 156 (498)
T KOG4849|consen 153 SPTV 156 (498)
T ss_pred CCee
Confidence 6555
No 183
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.72 E-value=0.008 Score=54.63 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=49.5
Q ss_pred HHHHHHHHH-HHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEEeCCCC
Q 009052 259 EQSVATFFS-QVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPSD 329 (545)
Q Consensus 259 e~~l~~~f~-~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v~~~~~ 329 (545)
-++|...|. +||+|..++ |.+-.-..-.|-+||.|...++|++|+ .||+.-+.|++|...+...
T Consensus 82 yEd~f~E~~~kygEiee~~-------Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 82 YEDVFTELEDKYGEIEELN-------VCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHHhhhhhhhh-------hhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 356666666 999987764 333333334789999999999999999 9999999999999876543
No 184
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=95.57 E-value=0.032 Score=56.28 Aligned_cols=15 Identities=33% Similarity=0.733 Sum_probs=7.6
Q ss_pred HHHHHHhcCCccEEE
Q 009052 382 IRELLESFGPLRGFD 396 (545)
Q Consensus 382 l~~~f~~~G~i~~v~ 396 (545)
|++++.+||.-+.+.
T Consensus 520 LRevLKKyG~nvGL~ 534 (752)
T KOG0670|consen 520 LREVLKKYGRNVGLH 534 (752)
T ss_pred HHHHHHHhCccccee
Confidence 455555666543333
No 185
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.22 E-value=0.0067 Score=57.45 Aligned_cols=80 Identities=15% Similarity=0.288 Sum_probs=62.4
Q ss_pred eEEEcCCCCCCCHHHHH---HHHHhcCCccEEEEeecCC--CCCc-ceEEEEEecChHHHHHHHHHhCCCccCCeEEEEE
Q 009052 367 RIFVGGLPYYFTEAQIR---ELLESFGPLRGFDLVKDRE--TGNS-KGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 440 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~i~~~~~--~g~~-~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~ 440 (545)
-++|-+|+..+..+.+. +.|.+||+|..|.+..++. .+.. ..-+||.|...++|..||...+|+.+.|+.|++.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 47888888777665554 5788899999999888752 1111 1128999999999999999999999999999988
Q ss_pred EcCCCC
Q 009052 441 RANQGA 446 (545)
Q Consensus 441 ~a~~~~ 446 (545)
+...+.
T Consensus 159 ~gttky 164 (327)
T KOG2068|consen 159 LGTTKY 164 (327)
T ss_pred hCCCcc
Confidence 875554
No 186
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.14 E-value=0.16 Score=47.29 Aligned_cols=74 Identities=24% Similarity=0.332 Sum_probs=58.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCce-e
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP-V 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~-l 322 (545)
...-|-|-|+|+... .-|..+|..||. |++..+..+..+-+|.|.+.-+|.+||..||+.|+|.. |
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~~cG~------------Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~vmi 262 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFSRCGE------------VVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMI 262 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHHhhCe------------eeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccceEE
Confidence 356788889998654 457889999996 55666667778999999999999999999999998865 4
Q ss_pred EEeCCCCC
Q 009052 323 KVRRPSDY 330 (545)
Q Consensus 323 ~v~~~~~~ 330 (545)
-|..+.+.
T Consensus 263 GVkpCtDk 270 (350)
T KOG4285|consen 263 GVKPCTDK 270 (350)
T ss_pred eeeecCCH
Confidence 45544443
No 187
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.03 Score=56.41 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=54.1
Q ss_pred cccceEEEcCCCCCC--C----HHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCc
Q 009052 243 RHARRVYVGGLPPTA--N----EQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGI 315 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~--t----e~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~ 315 (545)
.-...|+|.|+|--- . ..-|..+|+.+|+|..+..+. -.-+..+||.|++|.++.+|+.|+ .|||.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~-------~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPI-------DEEGGTKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeecc-------CccCCeeeEEEEEecChhhHHHHHHhcccc
Confidence 445679999998532 2 233667899999876543111 123457999999999999999999 99998
Q ss_pred eec-CceeEEe
Q 009052 316 IFE-GAPVKVR 325 (545)
Q Consensus 316 ~~~-g~~l~v~ 325 (545)
.|. ..++.|.
T Consensus 129 ~ldknHtf~v~ 139 (698)
T KOG2314|consen 129 RLDKNHTFFVR 139 (698)
T ss_pred eecccceEEee
Confidence 875 4455553
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.69 E-value=0.058 Score=45.24 Aligned_cols=70 Identities=26% Similarity=0.327 Sum_probs=47.4
Q ss_pred ccceEEEcCCCC------CCCHH---HHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCC
Q 009052 244 HARRVYVGGLPP------TANEQ---SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDG 314 (545)
Q Consensus 244 ~~~~l~V~nLp~------~~te~---~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g 314 (545)
+..||.|.=+.+ ...++ +|.+.|..||.+ +. +.+. .+.-+|.|.+-++|-+|+.++|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~Gev-----------vL-vRfv--~~~mwVTF~dg~sALaals~dg 91 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEV-----------VL-VRFV--GDTMWVTFRDGQSALAALSLDG 91 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-E-----------CE-EEEE--TTCEEEEESSCHHHHHHHHGCC
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCce-----------EE-EEEe--CCeEEEEECccHHHHHHHccCC
Confidence 455777776661 23332 566667777753 22 2222 2578999999999999999999
Q ss_pred ceecCceeEEeCC
Q 009052 315 IIFEGAPVKVRRP 327 (545)
Q Consensus 315 ~~~~g~~l~v~~~ 327 (545)
..++|+.|+|..-
T Consensus 92 ~~v~g~~l~i~LK 104 (146)
T PF08952_consen 92 IQVNGRTLKIRLK 104 (146)
T ss_dssp SEETTEEEEEEE-
T ss_pred cEECCEEEEEEeC
Confidence 9999999999753
No 189
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.63 E-value=0.11 Score=46.23 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=46.8
Q ss_pred CHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhC--CCccCCeEEEEEEcCCC
Q 009052 378 TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN--GIKMGDKTLTVRRANQG 445 (545)
Q Consensus 378 ~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~--g~~~~g~~l~v~~a~~~ 445 (545)
..+.|.++|..|+.+..+.+++. -+-+.|.|.+.++|..|...|+ +..|.|..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999888877765 3468999999999999999999 99999999999999433
No 190
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.44 E-value=0.44 Score=38.38 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=49.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCC-ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCC
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD 434 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g 434 (545)
.+.+...|..++-++|..+.+.+-. |..++|+++. ..++-.++++|.+.++|..-...+||..|+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4555555666666777766666554 7788898873 2345568999999999999999999998743
No 191
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.31 E-value=0.33 Score=45.33 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=55.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeE-EEEEEcCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKT-LTVRRANQ 444 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~-l~v~~a~~ 444 (545)
..|-|-++|+. .-.-|..+|++||.|++..... + -.+.+|.|.+.-+|.+||. -||..|+|.. |-|..|..
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~---n---gNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPS---N---GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecCC---C---CceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 35778888876 3456788999999998877652 2 3489999999999999994 4899997754 45777654
Q ss_pred CC
Q 009052 445 GA 446 (545)
Q Consensus 445 ~~ 446 (545)
+.
T Consensus 270 ks 271 (350)
T KOG4285|consen 270 KS 271 (350)
T ss_pred HH
Confidence 43
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.21 E-value=0.041 Score=48.69 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=50.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHh-cCCc---cEEEEeecCC-CC-CcceEEEEEecChHHHHHHHHHhCCCccC---C--
Q 009052 366 DRIFVGGLPYYFTEAQIRELLES-FGPL---RGFDLVKDRE-TG-NSKGYAFCVYQDLSVTDIACAALNGIKMG---D-- 434 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~-~G~i---~~v~i~~~~~-~g-~~~g~afV~f~~~e~A~~A~~~l~g~~~~---g-- 434 (545)
.+|.|++||+++|++++.+.++. ++.. ..+.-..... .. ..-.-|||.|.+.+++..-+..++|..|- |
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 48999999999999999997776 6654 2222112211 11 12345999999999999999999998772 2
Q ss_pred eEEEEEEcCC
Q 009052 435 KTLTVRRANQ 444 (545)
Q Consensus 435 ~~l~v~~a~~ 444 (545)
....|.+|.-
T Consensus 88 ~~~~VE~Apy 97 (176)
T PF03467_consen 88 YPAVVEFAPY 97 (176)
T ss_dssp EEEEEEE-SS
T ss_pred cceeEEEcch
Confidence 4566777744
No 193
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.18 E-value=0.048 Score=57.71 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=64.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCcc--CCeEEEEEEcCC
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM--GDKTLTVRRANQ 444 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~--~g~~l~v~~a~~ 444 (545)
+..+.|.+...+-.-|..+|++||.|.++..+++ -..|.|+|.+.+.|..|+.+|+|..+ -|-+.+|.++..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 5566777777888899999999999999998877 44799999999999999999999875 688899999866
Q ss_pred CCC
Q 009052 445 GAN 447 (545)
Q Consensus 445 ~~~ 447 (545)
-.+
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 654
No 194
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.08 E-value=0.42 Score=47.55 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=61.6
Q ss_pred cccceEEEcCCCCCC-CHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 243 RHARRVYVGGLPPTA-NEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~-te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
...+.|-+.-.|+.+ |-++|...|.+||. |.++.++-+--.|.|.|.+..+|-.|....+..|+++.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~------------i~n~qv~~~~~~a~vTF~t~aeag~a~~s~~avlnnr~ 437 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGE------------IENIQVDYSSLHAVVTFKTRAEAGEAYASHGAVLNNRF 437 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCc------------cccccccCchhhheeeeeccccccchhccccceecCce
Confidence 355667777777776 78999999999997 45555565667899999999999888889999999999
Q ss_pred eEEeCCCC
Q 009052 322 VKVRRPSD 329 (545)
Q Consensus 322 l~v~~~~~ 329 (545)
|+|.|-+.
T Consensus 438 iKl~whnp 445 (526)
T KOG2135|consen 438 IKLFWHNP 445 (526)
T ss_pred eEEEEecC
Confidence 99998654
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.08 E-value=0.19 Score=41.54 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=52.6
Q ss_pred CeEEEcCCCCCC----CHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 366 DRIFVGGLPYYF----TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 366 ~~l~v~nlp~~~----~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
.+|.|+=|..++ +...|...++.||+|.+|.+.- +--|.|.|.+..+|-+|+.+++. ...|..+.+.|
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 477776655544 3345556678899999998753 23699999999999999999876 56788888888
Q ss_pred c
Q 009052 442 A 442 (545)
Q Consensus 442 a 442 (545)
-
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 5
No 196
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=93.74 E-value=0.019 Score=48.40 Aligned_cols=12 Identities=8% Similarity=0.064 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 009052 259 EQSVATFFSQVM 270 (545)
Q Consensus 259 e~~l~~~f~~~G 270 (545)
++++.+++...|
T Consensus 140 eeEeiEMmk~MG 151 (196)
T KOG3263|consen 140 EEEEIEMMKIMG 151 (196)
T ss_pred CHHHHHHHHHhC
Confidence 334455555544
No 197
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.63 E-value=0.41 Score=33.88 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=38.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM 310 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~ 310 (545)
.+|+|.|+. +++-+||+.+|..|..... ...|.- + +-..|-|.|.+.+.|.+||
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~------~~~IEW--I--dDtScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG------PFRIEW--I--DDTSCNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC------CceEEE--e--cCCcEEEEECCHHHHHHHH
Confidence 479999995 5888999999999921100 001222 1 2346789999999999999
No 198
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.18 E-value=0.44 Score=34.31 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEE
Q 009052 376 YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 439 (545)
Q Consensus 376 ~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v 439 (545)
.++-++|+..+..|+- ..|..++ .|| ||-|.+..+|.++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677999999999974 3444553 454 89999999999999999999988777654
No 199
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=92.19 E-value=0.079 Score=55.86 Aligned_cols=11 Identities=0% Similarity=0.105 Sum_probs=5.5
Q ss_pred CCceEEEEeCC
Q 009052 520 CYKESGLIYTD 530 (545)
Q Consensus 520 ~~g~afV~F~~ 530 (545)
....+||.|..
T Consensus 968 d~~~~~v~~d~ 978 (1194)
T KOG4246|consen 968 DEDKEAVVIDE 978 (1194)
T ss_pred ccccceeeecc
Confidence 33445666543
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.07 E-value=0.71 Score=45.76 Aligned_cols=68 Identities=16% Similarity=0.300 Sum_probs=57.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCC-ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD 434 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g 434 (545)
...|+|-.+|..++-.||..++..+-. |..|+|+++.. ..+-.++|.|.+.++|....+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 458999999999999999999988765 99999999631 223458999999999999999999998854
No 201
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.86 E-value=0.27 Score=51.06 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=61.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
.+..++||+|+-..+..+-++.+...+|.|.++..+. |||++|.....+..|+..|+-..++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3445899999999999999999999999998876643 899999999999999999999999888887765
No 202
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=91.31 E-value=0.32 Score=49.41 Aligned_cols=8 Identities=13% Similarity=0.164 Sum_probs=3.7
Q ss_pred cEEEEEec
Q 009052 294 KFAFVEMR 301 (545)
Q Consensus 294 g~afV~F~ 301 (545)
||--|.+.
T Consensus 420 GYYrv~ig 427 (752)
T KOG0670|consen 420 GYYRVRIG 427 (752)
T ss_pred ceEEEehh
Confidence 44444443
No 203
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=90.54 E-value=0.12 Score=47.25 Aligned_cols=82 Identities=28% Similarity=0.503 Sum_probs=50.6
Q ss_pred CCCCeEEEcCCCCC------------CCHHHHHHHHHhcCCccEEEEeec-C----CCCCcc-----eE---------EE
Q 009052 363 EGPDRIFVGGLPYY------------FTEAQIRELLESFGPLRGFDLVKD-R----ETGNSK-----GY---------AF 411 (545)
Q Consensus 363 ~~~~~l~v~nlp~~------------~~~~~l~~~f~~~G~i~~v~i~~~-~----~~g~~~-----g~---------af 411 (545)
..+.+|++.+||-. .+++-|...|+.||.|..|.|+.- | .+|... || ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 33457777777654 357889999999999998887632 1 234332 22 34
Q ss_pred EEecChHHHHHHHHHhCCCcc----CC----eEEEEEEcCC
Q 009052 412 CVYQDLSVTDIACAALNGIKM----GD----KTLTVRRANQ 444 (545)
Q Consensus 412 V~f~~~e~A~~A~~~l~g~~~----~g----~~l~v~~a~~ 444 (545)
|+|-....-..|+.+|-|..+ .| -.|+|.|...
T Consensus 227 vqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 555555555667777777654 22 3466666533
No 204
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.34 E-value=0.12 Score=45.81 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=42.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHH-HHHhhcCCCCCCCCcEEEEE--ecC------CCcEEEEEecCHHHHHHHH-Hc
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQ-VMAAIGGNTAGPGDAVVNVY--INH------EKKFAFVEMRSVEEASNAM-AL 312 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~-~G~i~~~~~~~~~~~v~~~~--~~~------~~g~afV~F~~~~~A~~a~-~l 312 (545)
....+|.|++||+.+|++++.+.+.. ++.... ...+. .+. .-.-|||.|.+.+++...+ .+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~---------w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~ 75 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWD---------WYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRF 75 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE------------EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHC
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccc---------eEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhc
Confidence 34569999999999999998886665 432100 01111 111 1246999999999999999 89
Q ss_pred CCceecCc
Q 009052 313 DGIIFEGA 320 (545)
Q Consensus 313 ~g~~~~g~ 320 (545)
+|..|.+.
T Consensus 76 ~g~~F~D~ 83 (176)
T PF03467_consen 76 DGHVFVDS 83 (176)
T ss_dssp TTEEEE-T
T ss_pred CCcEEECC
Confidence 99877543
No 205
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=90.27 E-value=0.29 Score=44.73 Aligned_cols=73 Identities=19% Similarity=0.142 Sum_probs=56.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-Hc--CC--ceecCc
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-AL--DG--IIFEGA 320 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l--~g--~~~~g~ 320 (545)
..|+|.||..-+..+.|.+.|+.||+|... +++...-++..+-++|+|...-.|.+|+ .+ .+ ....+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~a-------v~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~ 104 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERA-------VAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGR 104 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchh-------eeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCC
Confidence 579999999999999999999999998654 3444455677888999999999999998 33 22 233455
Q ss_pred eeEEe
Q 009052 321 PVKVR 325 (545)
Q Consensus 321 ~l~v~ 325 (545)
++-|.
T Consensus 105 p~~Ve 109 (275)
T KOG0115|consen 105 PVGVE 109 (275)
T ss_pred ccCCC
Confidence 55553
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.97 E-value=1.7 Score=32.29 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHhcCC-----ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 375 YYFTEAQIRELLESFGP-----LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 375 ~~~~~~~l~~~f~~~G~-----i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
..++..+|..++...+. |-.|.|... |+||+-... .|..++..|++..+.|+.|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35777888888887655 445666544 899988664 788999999999999999999864
No 207
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=89.89 E-value=0.51 Score=47.48 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=9.3
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q 009052 251 GGLPPTANEQSVATFFSQV 269 (545)
Q Consensus 251 ~nLp~~~te~~l~~~f~~~ 269 (545)
||--+.+|...+...|-+|
T Consensus 555 G~~r~klt~~~~lk~rmq~ 573 (653)
T KOG2548|consen 555 GNSRPKLTFFECLKSRMQF 573 (653)
T ss_pred CCCCCcccHHHHHHHHHHH
Confidence 4444556655544444444
No 208
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.90 E-value=1.6 Score=36.33 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=51.0
Q ss_pred ccccceEEEcCCCCCC----CHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009052 242 TRHARRVYVGGLPPTA----NEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII 316 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~----te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~ 316 (545)
..+..||.|+-|..++ +...|...++.||+|.++ +...+..|.|.|.+..+|-.|+ ++.. .
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SV-------------T~cGrqsavVvF~d~~SAC~Av~Af~s-~ 148 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSV-------------TLCGRQSAVVVFKDITSACKAVSAFQS-R 148 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCccee-------------eecCCceEEEEehhhHHHHHHHHhhcC-C
Confidence 4466789998777766 334466677888875432 3446788999999999999999 6655 4
Q ss_pred ecCceeEEeC
Q 009052 317 FEGAPVKVRR 326 (545)
Q Consensus 317 ~~g~~l~v~~ 326 (545)
..|..+...|
T Consensus 149 ~pgtm~qCsW 158 (166)
T PF15023_consen 149 APGTMFQCSW 158 (166)
T ss_pred CCCceEEeec
Confidence 5666666665
No 209
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=88.75 E-value=0.28 Score=37.46 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=42.7
Q ss_pred EEEEecCHHHHHHHHHcCC--ceecCceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCC
Q 009052 296 AFVEMRSVEEASNAMALDG--IIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGL 373 (545)
Q Consensus 296 afV~F~~~~~A~~a~~l~g--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 373 (545)
|+|.|.++.-|+..+.+.. ..+++..+.|.-......... ..+ .......++|.|.||
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~----------k~q----------v~~~vs~rtVlvsgi 60 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQ----------KFQ----------VFSGVSKRTVLVSGI 60 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCce----------EEE----------EEEcccCCEEEEeCC
Confidence 6899999999999995444 446666665532100000000 000 000122358999999
Q ss_pred CCCCCHHHHHHHH
Q 009052 374 PYYFTEAQIRELL 386 (545)
Q Consensus 374 p~~~~~~~l~~~f 386 (545)
|..+.+++|++.+
T Consensus 61 p~~l~ee~l~D~L 73 (88)
T PF07292_consen 61 PDVLDEEELRDKL 73 (88)
T ss_pred CCCCChhhheeeE
Confidence 9999999988753
No 210
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.75 E-value=0.45 Score=35.63 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=36.8
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcC
Q 009052 248 VYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD 313 (545)
Q Consensus 248 l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~ 313 (545)
||--.+|..+...||.++|+.||.| .-..+ +-..|||.....+.|..|+ .+.
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I------------~VsWi--~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQI------------YVSWI--NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCE------------EEEEE--CTTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcE------------EEEEE--cCCcEEEEeecHHHHHHHHHHhc
Confidence 4444499999999999999999964 22222 3568999999999999998 543
No 211
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=87.11 E-value=0.63 Score=47.26 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=53.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCC--ceecC
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDG--IIFEG 319 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g--~~~~g 319 (545)
..-|.|+|+-||..+-+++|+.+|..- .| -.++++.+..+.+ -||.|.+..+|+.|. .|.. ..|.|
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~e----nc------Pk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqg 241 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGE----NC------PKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQG 241 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccC----CC------CCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcC
Confidence 456889999999999999999999852 11 1578888777665 499999999999998 4332 34666
Q ss_pred ceeEE
Q 009052 320 APVKV 324 (545)
Q Consensus 320 ~~l~v 324 (545)
++|.-
T Consensus 242 KpImA 246 (684)
T KOG2591|consen 242 KPIMA 246 (684)
T ss_pred cchhh
Confidence 65543
No 212
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=86.86 E-value=1.8 Score=37.13 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=6.5
Q ss_pred CCCCCCchhh
Q 009052 180 GFDMAPPASA 189 (545)
Q Consensus 180 ~~~~~~~~~~ 189 (545)
.|+.++.+..
T Consensus 118 yv~VPp~gf~ 127 (182)
T PF06495_consen 118 YVDVPPPGFE 127 (182)
T ss_pred eccCCCcccc
Confidence 5777776663
No 213
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.24 E-value=1.7 Score=38.67 Aligned_cols=59 Identities=24% Similarity=0.179 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcC--CceecCceeEEeCCC
Q 009052 258 NEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD--GIIFEGAPVKVRRPS 328 (545)
Q Consensus 258 te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~--g~~~~g~~l~v~~~~ 328 (545)
..+.|+++|..|+. ++....-++-+-..|.|.+.+.|..|. .|+ +..+.|..++|.++.
T Consensus 8 ~~~~l~~l~~~~~~------------~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDP------------PVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-S------------S-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCC------------ceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45778899999875 455666778888999999999999999 888 899999999998763
No 214
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=84.77 E-value=5.1 Score=37.75 Aligned_cols=79 Identities=11% Similarity=0.163 Sum_probs=60.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecC-------CCCCcceEEEEEecChHHHHHHH----HHhC--CCcc
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR-------ETGNSKGYAFCVYQDLSVTDIAC----AALN--GIKM 432 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~-------~~g~~~g~afV~f~~~e~A~~A~----~~l~--g~~~ 432 (545)
+.|.+.|+...++--.+...|-+||+|++|.++.+. ........+.+.|-+.+.|..-. +.|+ ...+
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L 95 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKL 95 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhc
Confidence 458999999999999999999999999999998774 11223456889999999887554 3333 2456
Q ss_pred CCeEEEEEEcCC
Q 009052 433 GDKTLTVRRANQ 444 (545)
Q Consensus 433 ~g~~l~v~~a~~ 444 (545)
....|.|.|..-
T Consensus 96 ~S~~L~lsFV~l 107 (309)
T PF10567_consen 96 KSESLTLSFVSL 107 (309)
T ss_pred CCcceeEEEEEE
Confidence 778888888754
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.98 E-value=4.2 Score=41.86 Aligned_cols=84 Identities=17% Similarity=0.268 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHHhc----CCccEEEEeecC----------CCCC----------------------
Q 009052 363 EGPDRIFVGGLPYY-FTEAQIRELLESF----GPLRGFDLVKDR----------ETGN---------------------- 405 (545)
Q Consensus 363 ~~~~~l~v~nlp~~-~~~~~l~~~f~~~----G~i~~v~i~~~~----------~~g~---------------------- 405 (545)
..+++|-|-||.+. +...+|.-+|+.| |.|.+|.|.... ..|-
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 44568999999986 7788999998864 468888886431 0111
Q ss_pred ---------------cceEEEEEecChHHHHHHHHHhCCCccC--CeEEEEEEcCCCC
Q 009052 406 ---------------SKGYAFCVYQDLSVTDIACAALNGIKMG--DKTLTVRRANQGA 446 (545)
Q Consensus 406 ---------------~~g~afV~f~~~e~A~~A~~~l~g~~~~--g~~l~v~~a~~~~ 446 (545)
.--||.|+|.+.+.|.+....+.|..|. +..|-+.|.....
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm 309 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDM 309 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCC
Confidence 1247999999999999999999999994 5667777764443
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.50 E-value=1.6 Score=46.85 Aligned_cols=71 Identities=27% Similarity=0.302 Sum_probs=59.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCce--ecCceeE
Q 009052 247 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII--FEGAPVK 323 (545)
Q Consensus 247 ~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~--~~g~~l~ 323 (545)
+.++.|.+-..+-.-|..+|.+||. |.+.++-+.-..|.|+|.+.+.|..|+ ++.|.. +.|-+.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~------------v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~ 367 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGS------------VASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSR 367 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcc------------hhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCcee
Confidence 4566777778899999999999996 556667778889999999999999999 999976 4677888
Q ss_pred EeCCCC
Q 009052 324 VRRPSD 329 (545)
Q Consensus 324 v~~~~~ 329 (545)
|.+++.
T Consensus 368 V~~ak~ 373 (1007)
T KOG4574|consen 368 VSFAKT 373 (1007)
T ss_pred EEeccc
Confidence 877653
No 217
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=81.81 E-value=5.7 Score=32.01 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=39.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecC-CCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 247 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 247 ~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
.+.+...|..++-++|..+...+-..+. .+.-+..+. ++-.+.+.|.+.+.|..+. .+||..+..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~--------~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIE--------HIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEE--------EEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444445555666655555433211 122222232 4557899999999999999 999988754
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.28 E-value=4.5 Score=40.37 Aligned_cols=67 Identities=12% Similarity=0.260 Sum_probs=52.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecC-CCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
...|+|-.+|..+|..||..|+..+-..+. .|.-+..+. ++-.++|.|.+.++|..+. .+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~--------~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQIS--------DIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhh--------eeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 778999999999999999999998764311 122222232 3456899999999999999 999998865
No 219
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=78.07 E-value=6.2 Score=28.43 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 256 TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 256 ~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
.++-++|+..|..|+- .++... ..|| ||.|.+..+|++|. ..+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-------------~~I~~d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-------------DRIRDD-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-------------ceEEec-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999952 233222 2344 89999999999999 88998888777654
No 220
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=75.16 E-value=4 Score=35.51 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=55.3
Q ss_pred CeEEEcCCCCCCCH-----HHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCe-EEEE
Q 009052 366 DRIFVGGLPYYFTE-----AQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK-TLTV 439 (545)
Q Consensus 366 ~~l~v~nlp~~~~~-----~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~-~l~v 439 (545)
..+++.+++..+.. .....+|-.|-......+++. .+..-|.|.+.+.|..|...+++..|.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 35666677655432 344566776766665566554 56778999999999999999999999988 8888
Q ss_pred EEcCCCCC
Q 009052 440 RRANQGAN 447 (545)
Q Consensus 440 ~~a~~~~~ 447 (545)
-++.....
T Consensus 85 yfaQ~~~~ 92 (193)
T KOG4019|consen 85 YFAQPGHP 92 (193)
T ss_pred EEccCCCc
Confidence 88855543
No 221
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=74.79 E-value=2.5 Score=38.37 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=15.9
Q ss_pred cEEEEEec---CCCcEEEEEecCHH
Q 009052 283 AVVNVYIN---HEKKFAFVEMRSVE 304 (545)
Q Consensus 283 ~v~~~~~~---~~~g~afV~F~~~~ 304 (545)
.|.++.+. .++..|.|+|..++
T Consensus 203 kIaDi~idhpScSKQHaviQyR~v~ 227 (293)
T KOG1882|consen 203 KIADIPIDHPSCSKQHAVIQYRLVE 227 (293)
T ss_pred eeeccCCCCccccccceeeeeeecc
Confidence 45555543 46889999998876
No 222
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=73.51 E-value=6.1 Score=29.24 Aligned_cols=62 Identities=23% Similarity=0.334 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEEeC
Q 009052 255 PTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRR 326 (545)
Q Consensus 255 ~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v~~ 326 (545)
..++..+|..+|...+.|..- .|-.+.+. ..|+||+-... .|..++ .|++..+.|++|.|..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~-------~IG~I~I~--~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGR-------DIGRIDIF--DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GG-------GEEEEEE---SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHH-------hEEEEEEe--eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 357888899988887655332 35555555 55888887544 677777 8999999999999864
No 223
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=72.61 E-value=1.4 Score=42.18 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=52.6
Q ss_pred cceEEEcCCCCCCCHHHHH---HHHHHHHHhhcCCCCCCCCcEEEEEe--c-CC--CcEEEEEecCHHHHHHHH-HcCCc
Q 009052 245 ARRVYVGGLPPTANEQSVA---TFFSQVMAAIGGNTAGPGDAVVNVYI--N-HE--KKFAFVEMRSVEEASNAM-ALDGI 315 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~---~~f~~~G~i~~~~~~~~~~~v~~~~~--~-~~--~g~afV~F~~~~~A~~a~-~l~g~ 315 (545)
..-+||-+|+..+..+.+. ++|.+||.|..+. +.... . .. -.-+||.|...++|..|| ..+|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~--------~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~ 148 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIV--------KNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF 148 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEe--------ecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH
Confidence 3468999999887555544 4788888764321 11111 0 11 124899999999999999 89999
Q ss_pred eecCceeEEeCCC
Q 009052 316 IFEGAPVKVRRPS 328 (545)
Q Consensus 316 ~~~g~~l~v~~~~ 328 (545)
.+.|+.|+..+..
T Consensus 149 ~~dg~~lka~~gt 161 (327)
T KOG2068|consen 149 VDDGRALKASLGT 161 (327)
T ss_pred HhhhhhhHHhhCC
Confidence 9999997775543
No 224
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.55 E-value=18 Score=37.50 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=55.6
Q ss_pred hccccceEEEcCCCCC-CCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCC---------------------------
Q 009052 241 ATRHARRVYVGGLPPT-ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE--------------------------- 292 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~-~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~--------------------------- 292 (545)
....+++|-|-||.|+ +...||.-+|+.|-+ +++.|+.|.+..+
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP--------~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~ 241 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLP--------KGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYK 241 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcC--------CCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCc
Confidence 3456789999999996 799999999999842 2333444433111
Q ss_pred --------------------------CcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 293 --------------------------KKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 293 --------------------------~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
--||.|+|.+++.|.... .++|+.|......+
T Consensus 242 ~s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 242 ESESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred ccccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 027999999999999999 89999987654443
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.64 E-value=18 Score=33.82 Aligned_cols=47 Identities=4% Similarity=0.041 Sum_probs=39.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCH
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSV 303 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~ 303 (545)
.-|+|+|||.++--.||+..+...|- .-+.+...-..|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~-----------~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKREC-----------TPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCC-----------CceeEeeecCCcceeEecCCc
Confidence 35999999999999999999998763 255666667789999999874
No 226
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=67.36 E-value=41 Score=31.91 Aligned_cols=179 Identities=12% Similarity=0.047 Sum_probs=95.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEE-EecCCCcEEEEEecCHHHHHHHH-H----cCC--
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNV-YINHEKKFAFVEMRSVEEASNAM-A----LDG-- 314 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~-~~~~~~g~afV~F~~~~~A~~a~-~----l~g-- 314 (545)
-..+.|.+.|+..+++-..+..-|..||+|.+++.....+.-.+. ..........+-|-+.+.+-... . |..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 346779999999999999999999999998776632222100000 01123467899999998876665 1 221
Q ss_pred ceecCceeEEeCCCC-CCCCcc--ccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHH-HHHH---H
Q 009052 315 IIFEGAPVKVRRPSD-YNPSLA--ATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQI-RELL---E 387 (545)
Q Consensus 315 ~~~~g~~l~v~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l-~~~f---~ 387 (545)
..+....|.|.+..- +..... ......+......+. -.......++.|+|.- ...+..+++ .+.+ .
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~------~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~ 165 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQ------YNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLK 165 (309)
T ss_pred HhcCCcceeEEEEEEeccccccccccccchhhHHhhhhh------heeecCCcceEEEEEe-cCccchhHHHHHhhhhhc
Confidence 335556666654321 111000 000000000000000 0011122334577653 344434333 2222 2
Q ss_pred hcC----CccEEEEeecCC--CCCcceEEEEEecChHHHHHHHHHhC
Q 009052 388 SFG----PLRGFDLVKDRE--TGNSKGYAFCVYQDLSVTDIACAALN 428 (545)
Q Consensus 388 ~~G----~i~~v~i~~~~~--~g~~~g~afV~f~~~e~A~~A~~~l~ 428 (545)
.-+ .|+.|.|+.... ..-++.||.+.|-+..-|...+..|.
T Consensus 166 ~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 166 NSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred cCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 222 267777765422 33467799999999999998887775
No 227
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.54 E-value=21 Score=35.08 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=46.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHH
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 426 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~ 426 (545)
+-+..|-|.++|.....+||...|+.|+. =-.|.++-+. .||.-|.+...|..||..
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 34568999999999999999999999986 4455665552 799999999999999843
No 228
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=65.74 E-value=4.2 Score=34.94 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHH-HHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCceeEEeCCCCCCCCc
Q 009052 256 TANEQSVATFFSQV-MAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSL 334 (545)
Q Consensus 256 ~~te~~l~~~f~~~-G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l~v~~~~~~~~~~ 334 (545)
.++-..|...+... +.. ..+.-..+ ..++..++|.+.+++..++......+.|..+.+..........
T Consensus 28 ~~~~~~l~~~l~~~W~~~---------~~~~i~~l--~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~ 96 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLK---------GGVKIRDL--GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPS 96 (153)
T ss_pred CCCHHHHHHHHHHHhCCC---------CcEEEEEe--CCCeEEEEEEeccceeEEEecccccccccchhhhhhccccccc
Confidence 46677777777654 210 01222222 4689999999999999999777777888888876543221100
Q ss_pred cccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCccEEEEee
Q 009052 335 AATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYY-FTEAQIRELLESFGPLRGFDLVK 399 (545)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~i~~ 399 (545)
. ......+--|.|.|||.. .+++-|..+.+.+|.+..+....
T Consensus 97 ~-----------------------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 97 E-----------------------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred c-----------------------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 0 000001124889999987 77888999999999998887644
No 229
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=65.18 E-value=58 Score=30.60 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=35.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCc-cEEEEeecCCCCCcceEEEEEecChH
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPL-RGFDLVKDRETGNSKGYAFCVYQDLS 418 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~e 418 (545)
.-|+|+||+-++--.||+..+.+.|.+ .++.+. | +.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----G-HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-----c-CCcceeEecCCcc
Confidence 359999999999999999999987753 333332 2 3678999997643
No 230
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=61.35 E-value=4.9 Score=29.67 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=14.8
Q ss_pred CCCceeEEecCCCCcccCCChH
Q 009052 475 SVPSKVVCLTQVVSADELKDDE 496 (545)
Q Consensus 475 ~~~~~~~~l~n~~~~~~l~~~~ 496 (545)
..++.|+.|+|||++.+.++..
T Consensus 51 ~~aS~C~lLkNMFDP~~Ete~~ 72 (73)
T PF15519_consen 51 PIASRCFLLKNMFDPAEETEPD 72 (73)
T ss_dssp S---SEEEEESSS-TTCGGSTT
T ss_pred CCCCceeeeecCCCcccccCCC
Confidence 4899999999999998766643
No 231
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.97 E-value=37 Score=33.54 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=45.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHc
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMAL 312 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l 312 (545)
-.+.|-|.++|....-+||...|..|+.- +| .|.-+ ....||..|.+...|..||.|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~k-gf-------dIkWv----DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNK-GF-------DIKWV----DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcC-Cc-------eeEEe----ecceeEEeecchHHHHHHhhc
Confidence 34788999999999999999999999852 11 23322 456899999999999999966
No 232
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=52.53 E-value=28 Score=24.59 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhccCCceee
Q 009052 499 EEILEDMRQEGGKFAFCSPT 518 (545)
Q Consensus 499 ~~~~~~l~~~f~~fG~V~~v 518 (545)
+.+..+|++.|+..|.|.-+
T Consensus 5 e~i~~~iR~~fs~lG~I~vL 24 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVL 24 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEE
Confidence 46778999999999999887
No 233
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.94 E-value=2.5 Score=41.77 Aligned_cols=77 Identities=5% Similarity=-0.269 Sum_probs=61.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
...++..+|...+++++.-+|+.||.|..+.+.+....|..+-++||.-.+. +|..+|.-+....+.|..++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCc
Confidence 3578889999999999999999999999988877756666677788877653 5677777777777777777777763
No 234
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.99 E-value=22 Score=28.95 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=28.1
Q ss_pred eEEEcCCCCCC---------CHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChH
Q 009052 367 RIFVGGLPYYF---------TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS 418 (545)
Q Consensus 367 ~l~v~nlp~~~---------~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e 418 (545)
+++|.|++... +.+.|.+.|..|..++ +..+..+ .-+.|++.|+|...-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCCh
Confidence 67788886543 4579999999999875 5555553 245899999998754
No 235
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.69 E-value=36 Score=33.01 Aligned_cols=15 Identities=7% Similarity=-0.066 Sum_probs=5.9
Q ss_pred EEEEecChHHHHHHH
Q 009052 410 AFCVYQDLSVTDIAC 424 (545)
Q Consensus 410 afV~f~~~e~A~~A~ 424 (545)
|||.-.+---++.|+
T Consensus 364 GYVMSGSRHrrMeAv 378 (426)
T KOG2812|consen 364 GYVMSGSRHRRMEAV 378 (426)
T ss_pred ceeeccchHHHHHHH
Confidence 344333333344443
No 236
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=47.29 E-value=3.1 Score=42.50 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=55.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEE
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 438 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~ 438 (545)
.+.|||.|++++++-.+|..+|..+-.+..+.+.....-..-..+++|.|.---....|+.+||+..+....+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~s 304 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLS 304 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccc
Confidence 35699999999999999999999988777776644322222345688999988888888888888776544433
No 237
>KOG3861 consensus Sensory cilia assembly protein [Extracellular structures]
Probab=46.09 E-value=14 Score=35.10 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=20.6
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHhhcC
Q 009052 250 VGGLPPTANEQSVATFFSQVMAAIGG 275 (545)
Q Consensus 250 V~nLp~~~te~~l~~~f~~~G~i~~~ 275 (545)
+..|....+|+||.-+..++|.|.++
T Consensus 368 Laq~tn~s~EedLefyi~kcg~Itgi 393 (438)
T KOG3861|consen 368 LAQMTNQSKEEDLEFYIKKCGRITGI 393 (438)
T ss_pred HHHHhccCccHHHHHHHHHhhhheee
Confidence 34445578999999999999998654
No 238
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=44.76 E-value=56 Score=23.69 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCC-ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 380 AQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 380 ~~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
++|.+.|...|- |..|.-+..+.++.+...-||+.+...+...+ ++=..|++..|.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 578888888885 77777777665677777889998877664433 344578899999987643
No 239
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=43.10 E-value=25 Score=34.67 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=47.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCC-ccEEEEeecCCC--CCcceEEEEEecChHHHHHHHHHhCCCcc
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRET--GNSKGYAFCVYQDLSVTDIACAALNGIKM 432 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~i~~~~~~--g~~~g~afV~f~~~e~A~~A~~~l~g~~~ 432 (545)
..|.|.+||+.+++++|.+-..+|-. +....+...... ..-.+.|||.|...++...-...++|..|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 57999999999999999888887654 444444432111 11246799999999997777777777654
No 240
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=41.74 E-value=51 Score=23.90 Aligned_cols=61 Identities=23% Similarity=0.215 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCC-ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 380 AQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 380 ~~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
++|.+.|..+|- +..|.-+....++.+...-||+.....+-.. .|+=..|+|+.|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 468889999996 7888877776667777778888876544333 334456789999988764
No 241
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=41.30 E-value=39 Score=25.68 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=24.1
Q ss_pred CccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCC
Q 009052 391 PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI 430 (545)
Q Consensus 391 ~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~ 430 (545)
.|.++..+.+ -+||.|||=.+..+...|+..+-+.
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 3666665543 4899999999999999999776554
No 242
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=40.38 E-value=23 Score=34.88 Aligned_cols=64 Identities=22% Similarity=0.345 Sum_probs=46.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEec--------CCCcEEEEEecCHHHHHHHH-HcCC
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYIN--------HEKKFAFVEMRSVEEASNAM-ALDG 314 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~--------~~~g~afV~F~~~~~A~~a~-~l~g 314 (545)
..+.|.|..||+.+++.+|.+-+..|-. .+....+. .-.+.|||.|..+++..... -++|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~-----------~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g 74 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPE-----------HVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDG 74 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCcc-----------ccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCc
Confidence 4568999999999999999888877532 11111111 11467999999999988877 7888
Q ss_pred ceec
Q 009052 315 IIFE 318 (545)
Q Consensus 315 ~~~~ 318 (545)
..|.
T Consensus 75 ~ifl 78 (376)
T KOG1295|consen 75 YIFL 78 (376)
T ss_pred eEEe
Confidence 7653
No 243
>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]
Probab=40.07 E-value=51 Score=25.17 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHh-ccCCceee-cCCceE-EEEeCCCCCcCcccccccc
Q 009052 498 YEEILEDMRQEGG-KFAFCSPT-FCYKES-GLIYTDRRLHNPQFVYFYI 543 (545)
Q Consensus 498 ~~~~~~~l~~~f~-~fG~V~~v-~~~g~a-fV~F~~~e~A~a~~~~~~~ 543 (545)
...+...|+++|. +||.-=.| .|.+|+ ||++.+- -|+|||+
T Consensus 36 ~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g-----~Fiyf~~ 79 (90)
T KOG3430|consen 36 EKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETG-----HFIYFYL 79 (90)
T ss_pred hHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecC-----cEEEEEe
Confidence 3456668999994 89998888 566655 7777653 4555553
No 244
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=40.00 E-value=6.6 Score=38.62 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=45.4
Q ss_pred eEEEcCCCCCCCH--------HHHHHHHHh--cCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHH
Q 009052 367 RIFVGGLPYYFTE--------AQIRELLES--FGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 425 (545)
Q Consensus 367 ~l~v~nlp~~~~~--------~~l~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~ 425 (545)
.+|+.+++..... +++...|.. ++.+..|...++.......|-.|++|.....|++++.
T Consensus 176 ~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 176 DVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4666666655433 589999999 6778888877775566778899999999999998763
No 245
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=39.08 E-value=47 Score=25.73 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHHHHHhccCCceee--------cC----CceEEEEeCCCCCcC
Q 009052 492 LKDDEEYEEILEDMRQEGGKFAFCSPT--------FC----YKESGLIYTDRRLHN 535 (545)
Q Consensus 492 l~~~~~~~~~~~~l~~~f~~fG~V~~v--------~~----~g~afV~F~~~e~A~ 535 (545)
++|.+.|++-...+...|++||.=--+ .+ ...+.|+|.+.+.|.
T Consensus 12 v~D~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar 67 (96)
T COG5470 12 VRDPEQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAAR 67 (96)
T ss_pred ecCHHHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHH
Confidence 567788888889999999999764444 22 456899999998874
No 246
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.92 E-value=1.5e+02 Score=22.60 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=40.9
Q ss_pred EEcCCCCCCCHHHHHHHHHh-cCC-ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHh
Q 009052 369 FVGGLPYYFTEAQIRELLES-FGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 427 (545)
Q Consensus 369 ~v~nlp~~~~~~~l~~~f~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l 427 (545)
|+--.+...+..+|++.++. ||. |..|..+..+ ...--|||.+.....|......|
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 33446788999999999998 664 7777766553 22446999999988888765443
No 247
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=35.63 E-value=2.6e+02 Score=24.76 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=49.0
Q ss_pred ceEEEcCCCCCC--CHHH---HHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 246 RRVYVGGLPPTA--NEQS---VATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 246 ~~l~V~nLp~~~--te~~---l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
.++++-+++..+ +..+ ...+|.+|- .......-++.+..-|.|.+++.|..|. .+++..|.|
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n------------~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~ 78 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQIN------------EDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNG 78 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhC------------cchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCC
Confidence 357777777654 2222 233343331 2333445567788899999999999999 899999988
Q ss_pred c-eeEEeCCCCCC
Q 009052 320 A-PVKVRRPSDYN 331 (545)
Q Consensus 320 ~-~l~v~~~~~~~ 331 (545)
. .++.-++....
T Consensus 79 ~~~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 79 KNELKLYFAQPGH 91 (193)
T ss_pred CceEEEEEccCCC
Confidence 8 67766654433
No 248
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=34.31 E-value=2e+02 Score=21.51 Aligned_cols=56 Identities=9% Similarity=0.068 Sum_probs=40.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cCC-ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHH
Q 009052 368 IFVGGLPYYFTEAQIRELLES-FGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 426 (545)
Q Consensus 368 l~v~nlp~~~~~~~l~~~f~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~ 426 (545)
-|+-.++...+..+|+..++. ||. |..|..+.-+ ...--|||.+..-..|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 444457888999999999998 664 7777665553 1244699999988888765444
No 249
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=31.71 E-value=71 Score=29.32 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=28.2
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAI 273 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~ 273 (545)
.....+||+-|+|..+|++-|..+.+++|-+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 44667899999999999999999999999654
No 250
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=31.61 E-value=53 Score=26.79 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=27.2
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecC-CCcEEEEEecCHHH-HHHHHH
Q 009052 247 RVYVGGLPPT---------ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEE-ASNAMA 311 (545)
Q Consensus 247 ~l~V~nLp~~---------~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afV~F~~~~~-A~~a~~ 311 (545)
+++|-|++.. ++-+.|.+.|..|..+ .+..+.... +.|+++|+|..--. -..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~----------kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL----------KVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S----------EEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc----------eeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4667777543 3568899999999764 344333222 36899999986433 333443
No 251
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=31.14 E-value=62 Score=29.74 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=3.9
Q ss_pred eecCceeEE
Q 009052 316 IFEGAPVKV 324 (545)
Q Consensus 316 ~~~g~~l~v 324 (545)
.|.|+.++|
T Consensus 196 yL~gRerkI 204 (293)
T KOG1882|consen 196 YLDGRERKI 204 (293)
T ss_pred eecCceeee
Confidence 344444444
No 252
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=30.35 E-value=45 Score=29.15 Aligned_cols=33 Identities=9% Similarity=0.027 Sum_probs=26.4
Q ss_pred HHHHHHHHhccCCceee----------cCCceEEEEeCCCCCcCc
Q 009052 502 LEDMRQEGGKFAFCSPT----------FCYKESGLIYTDRRLHNP 536 (545)
Q Consensus 502 ~~~l~~~f~~fG~V~~v----------~~~g~afV~F~~~e~A~a 536 (545)
.++|.++-+ |++..| .-.|.+||.|.+.++|.|
T Consensus 123 l~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a 165 (205)
T KOG4213|consen 123 LDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFA 165 (205)
T ss_pred HHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHh
Confidence 347777777 888888 346889999999999865
No 253
>PF14893 PNMA: PNMA
Probab=29.82 E-value=47 Score=32.64 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHH
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQV 269 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~ 269 (545)
..+.|.|.|||.++++++|.+.+..-
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~ 42 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAA 42 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHh
Confidence 45679999999999999999988864
No 254
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.00 E-value=79 Score=23.14 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=22.3
Q ss_pred eEEEEEecChHHHHHHHHHhCCCccCCe
Q 009052 408 GYAFCVYQDLSVTDIACAALNGIKMGDK 435 (545)
Q Consensus 408 g~afV~f~~~e~A~~A~~~l~g~~~~g~ 435 (545)
.+.+|.|.+..+|.+|-+.|....+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 3689999999999999988876555433
No 255
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.98 E-value=2.1e+02 Score=19.74 Aligned_cols=54 Identities=9% Similarity=0.027 Sum_probs=38.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecCh----HHHHHHHHH
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL----SVTDIACAA 426 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~----e~A~~A~~~ 426 (545)
++.|.||.=.-....|.+.+...-.|.++.+-.. .+.+-|.|... ++..++|..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 3567777666677889999999888988888655 45788888754 444455543
No 256
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=26.24 E-value=2.8e+02 Score=20.65 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=43.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEec--CCCcEEEEEecCHHHHHHHHHcCCcee
Q 009052 248 VYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYIN--HEKKFAFVEMRSVEEASNAMALDGIIF 317 (545)
Q Consensus 248 l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~a~~l~g~~~ 317 (545)
|...+||..+|.++|.........+..-. ++-.-+..... ..+-||+.+=.+.+...++-...|...
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~---~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEM---PGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRAGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhc---CCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHcCCCc
Confidence 56788999999999999988776654432 11123333344 345577777677887777775556543
No 257
>KOG2217 consensus U4/U6.U5 snRNP associated protein [RNA processing and modification]
Probab=25.76 E-value=27 Score=37.04 Aligned_cols=26 Identities=4% Similarity=-0.105 Sum_probs=12.9
Q ss_pred EEEEEecChHHHHHHHHHhCCCccCC
Q 009052 409 YAFCVYQDLSVTDIACAALNGIKMGD 434 (545)
Q Consensus 409 ~afV~f~~~e~A~~A~~~l~g~~~~g 434 (545)
-++|.+....+-..|+....-.-+.|
T Consensus 448 ~~~i~~~~tte~~rtlg~i~t~g~eg 473 (705)
T KOG2217|consen 448 RGAIVLDATTEFCRTLGDITTYGLEG 473 (705)
T ss_pred cceeeehhhhHHHHhccCcccccccc
Confidence 35666665555555554443333333
No 258
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=25.50 E-value=2.2e+02 Score=28.36 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=30.8
Q ss_pred eEEEEEecChHHHHHHHHHhCCCccC--CeEEEEEEcCCC
Q 009052 408 GYAFCVYQDLSVTDIACAALNGIKMG--DKTLTVRRANQG 445 (545)
Q Consensus 408 g~afV~f~~~e~A~~A~~~l~g~~~~--g~~l~v~~a~~~ 445 (545)
-||.|++.+.+.+......+.|..+. +..+-+.|....
T Consensus 259 YyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~ 298 (622)
T COG5638 259 YYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDS 298 (622)
T ss_pred EEEEEEeccchhhHHHHhccCccccccccceeeeeecCCC
Confidence 38999999999999999999999874 466777776443
No 259
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=23.91 E-value=38 Score=26.05 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=21.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHH
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFS 267 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~ 267 (545)
....++|.|.|||..+.+++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 44678999999999999999887644
No 260
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=21.97 E-value=7.7 Score=39.80 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=44.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
...|+|||.|+++.++..+|..++..+--++.+. ............++.|.|.---....|+ +||+..+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfa------ls~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFA------LSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeee------ccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4678999999999999999999998763221111 0000001122457888888666666666 67776554
No 261
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=21.20 E-value=1e+02 Score=30.24 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=26.4
Q ss_pred EEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCC
Q 009052 410 AFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 446 (545)
Q Consensus 410 afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 446 (545)
|||.|++..+|..|++.+.... +..+.|..|.+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999998765443 3555777775554
No 262
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=21.09 E-value=84 Score=28.85 Aligned_cols=32 Identities=19% Similarity=0.451 Sum_probs=27.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEE
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 397 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i 397 (545)
.+||+-|+|...+++-|..+.+.+|.+..+.+
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 47999999999999999999999997665544
No 263
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=20.23 E-value=72 Score=27.12 Aligned_cols=61 Identities=7% Similarity=0.024 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHh-cCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 376 YFTEAQIRELLES-FGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 376 ~~~~~~l~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
.++-..|...+.. .+....+.+..- ..++..++|.+.+++.+++. .....|+|..|.+..-
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W 89 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRW 89 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhh
Confidence 3556666666655 233323443322 15689999999999998874 3445667777766554
Done!