Query 009052
Match_columns 545
No_of_seqs 462 out of 4098
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 17:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.9E-36 6.4E-41 293.8 21.2 221 240-541 17-246 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-35 5.6E-40 288.4 19.5 227 240-542 36-274 (292)
3 2yh0_A Splicing factor U2AF 65 100.0 4E-32 1.4E-36 248.7 25.7 193 244-446 3-195 (198)
4 2g4b_A Splicing factor U2AF 65 100.0 2.7E-32 9.3E-37 243.9 22.2 170 243-442 2-171 (172)
5 4f02_A Polyadenylate-binding p 100.0 1.7E-32 5.9E-37 253.5 13.7 167 243-444 13-180 (213)
6 3md3_A Nuclear and cytoplasmic 100.0 7.7E-32 2.6E-36 239.4 15.9 164 246-443 1-165 (166)
7 1b7f_A Protein (SXL-lethal pro 100.0 1.1E-31 3.8E-36 238.9 15.5 164 244-442 2-168 (168)
8 1l3k_A Heterogeneous nuclear r 100.0 1.1E-31 3.6E-36 245.5 15.2 177 241-447 9-185 (196)
9 1fxl_A Paraneoplastic encephal 100.0 1.7E-31 5.9E-36 237.4 15.3 163 245-442 2-167 (167)
10 2qfj_A FBP-interacting repress 100.0 4.7E-32 1.6E-36 251.9 11.6 186 238-447 21-207 (216)
11 1fje_B Nucleolin RBD12, protei 100.0 7.1E-31 2.4E-35 235.3 18.9 165 242-445 10-174 (175)
12 2cjk_A Nuclear polyadenylated 100.0 1.1E-31 3.7E-36 238.7 9.0 165 244-445 2-166 (167)
13 3nmr_A Cugbp ELAV-like family 100.0 3.3E-30 1.1E-34 231.0 14.9 165 244-443 2-175 (175)
14 3tyt_A Heterogeneous nuclear r 100.0 6.1E-29 2.1E-33 226.9 18.2 185 244-442 3-204 (205)
15 2adc_A Polypyrimidine tract-bi 100.0 4.5E-28 1.5E-32 226.5 21.5 186 242-444 31-227 (229)
16 3pgw_A U1-A; protein-RNA compl 100.0 3.5E-28 1.2E-32 235.3 21.0 188 241-443 5-281 (282)
17 2ghp_A U4/U6 snRNA-associated 100.0 2.1E-28 7.2E-33 238.1 16.4 172 244-445 116-291 (292)
18 3smz_A Protein raver-1, ribonu 100.0 1.2E-28 4.1E-33 238.8 14.0 170 244-446 94-265 (284)
19 3sde_A Paraspeckle component 1 100.0 4E-28 1.4E-32 231.5 16.6 157 242-446 19-180 (261)
20 1qm9_A Polypyrimidine tract-bi 100.0 6.1E-28 2.1E-32 220.7 16.8 184 245-445 3-197 (198)
21 4f02_A Polyadenylate-binding p 99.9 1.3E-23 4.3E-28 194.0 14.1 143 364-541 14-163 (213)
22 1b7f_A Protein (SXL-lethal pro 99.9 1.5E-23 5.3E-28 186.1 12.5 140 365-541 3-151 (168)
23 1fxl_A Paraneoplastic encephal 99.9 2.4E-23 8.1E-28 184.6 13.6 140 366-542 3-151 (167)
24 1l3k_A Heterogeneous nuclear r 99.9 2.9E-23 1E-27 189.3 12.5 144 364-539 12-164 (196)
25 3md3_A Nuclear and cytoplasmic 99.9 9.1E-23 3.1E-27 180.6 12.7 140 366-541 1-149 (166)
26 2qfj_A FBP-interacting repress 99.9 1.6E-22 5.5E-27 187.4 13.9 150 366-541 29-187 (216)
27 3tyt_A Heterogeneous nuclear r 99.9 7.8E-23 2.7E-27 186.4 8.2 163 365-542 4-186 (205)
28 3nmr_A Cugbp ELAV-like family 99.9 3.8E-22 1.3E-26 178.3 11.7 139 366-540 4-155 (175)
29 2kn4_A Immunoglobulin G-bindin 99.9 1.4E-21 4.6E-26 171.4 14.4 141 291-447 11-152 (158)
30 3pgw_A U1-A; protein-RNA compl 99.9 2.4E-21 8.3E-26 187.1 15.7 80 364-446 8-91 (282)
31 2cjk_A Nuclear polyadenylated 99.9 2.1E-22 7.3E-27 178.5 6.6 135 366-539 4-147 (167)
32 1fje_B Nucleolin RBD12, protei 99.8 9E-22 3.1E-26 175.9 7.2 142 363-541 11-156 (175)
33 2adc_A Polypyrimidine tract-bi 99.8 7.8E-21 2.7E-25 177.3 13.4 163 363-540 32-208 (229)
34 3sde_A Paraspeckle component 1 99.8 8E-21 2.7E-25 180.9 12.5 129 364-541 21-157 (261)
35 2g4b_A Splicing factor U2AF 65 99.8 1.1E-20 3.8E-25 168.3 11.7 133 365-541 4-156 (172)
36 1qm9_A Polypyrimidine tract-bi 99.8 1.2E-20 4.1E-25 172.2 10.9 161 366-541 4-178 (198)
37 2i2y_A Fusion protein consists 99.8 3.3E-20 1.1E-24 160.8 11.9 136 291-445 11-148 (150)
38 2yh0_A Splicing factor U2AF 65 99.8 1.9E-20 6.6E-25 170.8 10.6 153 365-541 4-176 (198)
39 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-19 4E-24 144.7 11.4 79 366-444 20-98 (99)
40 2lxi_A RNA-binding protein 10; 99.8 3.4E-19 1.2E-23 139.7 8.2 82 366-447 2-85 (91)
41 3s8s_A Histone-lysine N-methyl 99.8 1.5E-18 5E-23 141.0 11.8 80 364-443 5-84 (110)
42 4f25_A Polyadenylate-binding p 99.8 1.5E-19 5.1E-24 148.7 5.5 108 245-381 5-113 (115)
43 2lkz_A RNA-binding protein 5; 99.8 1E-18 3.4E-23 137.5 9.5 80 365-444 9-94 (95)
44 2lea_A Serine/arginine-rich sp 99.7 1.8E-18 6E-23 146.4 8.3 124 294-447 5-129 (135)
45 3bs9_A Nucleolysin TIA-1 isofo 99.7 6.2E-18 2.1E-22 131.8 10.7 81 365-445 6-86 (87)
46 3md1_A Nuclear and cytoplasmic 99.7 9.3E-18 3.2E-22 129.5 11.1 80 366-445 2-81 (83)
47 3p5t_L Cleavage and polyadenyl 99.7 2E-18 6.9E-23 135.3 6.9 81 367-447 3-85 (90)
48 1x5s_A Cold-inducible RNA-bind 99.7 1.4E-17 4.6E-22 134.1 11.8 85 363-447 10-94 (102)
49 1whw_A Hypothetical protein ri 99.7 1.4E-17 4.9E-22 133.2 11.8 84 364-447 7-90 (99)
50 2dnm_A SRP46 splicing factor; 99.7 1E-17 3.5E-22 135.1 11.0 85 363-447 11-95 (103)
51 2cqc_A Arginine/serine-rich sp 99.7 1.5E-17 5E-22 132.0 11.8 82 363-444 13-94 (95)
52 2x1f_A MRNA 3'-END-processing 99.7 1.2E-17 4E-22 132.8 11.1 82 365-446 2-83 (96)
53 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4.1E-22 134.4 11.2 85 363-447 10-94 (102)
54 2dnz_A Probable RNA-binding pr 99.7 1.2E-17 4.3E-22 132.4 11.2 84 364-447 4-87 (95)
55 2dgo_A Cytotoxic granule-assoc 99.7 2.5E-17 8.6E-22 135.7 13.4 86 363-448 13-98 (115)
56 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1E-17 3.4E-22 130.0 10.3 80 364-443 6-85 (85)
57 2div_A TRNA selenocysteine ass 99.7 1.4E-17 4.9E-22 133.1 11.2 84 363-446 7-95 (99)
58 2cq0_A Eukaryotic translation 99.7 1.5E-17 5E-22 134.1 11.3 85 363-447 13-97 (103)
59 1x5t_A Splicing factor 3B subu 99.7 1.4E-17 4.9E-22 132.3 11.1 83 365-447 5-88 (96)
60 2cpz_A CUG triplet repeat RNA- 99.7 2.4E-17 8.1E-22 135.8 12.7 84 364-447 24-107 (115)
61 4f25_A Polyadenylate-binding p 99.7 1.3E-17 4.4E-22 137.1 10.9 80 365-446 5-84 (115)
62 2dgs_A DAZ-associated protein 99.7 2.1E-17 7.3E-22 132.1 11.9 84 364-448 9-92 (99)
63 2e5h_A Zinc finger CCHC-type a 99.7 1.5E-17 5E-22 131.7 10.7 81 363-443 14-94 (94)
64 1x5u_A Splicing factor 3B subu 99.7 2.3E-17 7.9E-22 133.5 12.0 85 363-447 13-97 (105)
65 2jrs_A RNA-binding protein 39; 99.7 1.5E-17 5.3E-22 134.8 10.9 83 363-445 24-106 (108)
66 2dgp_A Bruno-like 4, RNA bindi 99.7 2.4E-17 8.3E-22 133.6 11.9 85 363-447 11-98 (106)
67 2do4_A Squamous cell carcinoma 99.7 4.6E-17 1.6E-21 130.4 13.0 82 364-446 16-97 (100)
68 2la6_A RNA-binding protein FUS 99.7 3.3E-17 1.1E-21 130.9 11.9 80 364-443 12-99 (99)
69 1sjq_A Polypyrimidine tract-bi 99.7 1.5E-17 5E-22 131.9 9.4 80 364-449 15-96 (105)
70 1x4h_A RNA-binding protein 28; 99.7 4.5E-17 1.5E-21 133.3 12.6 86 363-448 13-104 (111)
71 2wbr_A GW182, gawky, LD47780P; 99.7 1.5E-17 5.3E-22 125.1 8.9 72 365-442 7-78 (89)
72 3pgw_S U1-70K; protein-RNA com 99.7 2.8E-18 9.7E-23 173.8 6.6 83 364-446 101-183 (437)
73 2fy1_A RNA-binding motif prote 99.7 3.5E-17 1.2E-21 134.5 11.5 83 364-447 6-88 (116)
74 2cpf_A RNA binding motif prote 99.7 2.4E-17 8.2E-22 131.6 10.2 83 365-447 5-90 (98)
75 3r27_A HnRNP L, heterogeneous 99.7 2.9E-17 9.9E-22 128.8 10.3 77 364-446 20-98 (100)
76 2cph_A RNA binding motif prote 99.7 5.5E-17 1.9E-21 131.8 12.4 84 364-447 14-99 (107)
77 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.5E-17 8.5E-22 144.9 11.1 141 298-447 11-154 (165)
78 2dgx_A KIAA0430 protein; RRM d 99.7 4.6E-17 1.6E-21 129.2 11.6 80 364-446 8-91 (96)
79 1p27_B RNA-binding protein 8A; 99.7 3E-17 1E-21 133.1 10.4 81 365-445 23-103 (106)
80 2dnh_A Bruno-like 5, RNA bindi 99.7 7.8E-17 2.7E-21 130.4 12.8 83 364-447 14-99 (105)
81 3ns6_A Eukaryotic translation 99.7 9.2E-18 3.2E-22 134.2 7.1 77 366-442 7-90 (100)
82 2ywk_A Putative RNA-binding pr 99.7 4.1E-17 1.4E-21 129.4 10.6 80 364-444 15-94 (95)
83 4fxv_A ELAV-like protein 1; RN 99.7 4.5E-18 1.5E-22 135.5 4.8 80 243-328 17-97 (99)
84 3ulh_A THO complex subunit 4; 99.7 5.5E-17 1.9E-21 131.8 11.4 80 363-443 27-106 (107)
85 2d9p_A Polyadenylate-binding p 99.7 6.5E-17 2.2E-21 130.3 11.5 83 363-447 13-95 (103)
86 2cpe_A RNA-binding protein EWS 99.7 8.2E-17 2.8E-21 132.1 12.2 85 363-447 13-105 (113)
87 2dng_A Eukaryotic translation 99.7 8E-17 2.7E-21 129.7 11.8 83 363-447 13-95 (103)
88 2kxn_B Transformer-2 protein h 99.7 2.7E-17 9.3E-22 137.7 9.3 84 362-445 43-126 (129)
89 2cqp_A RNA-binding protein 12; 99.7 3.8E-17 1.3E-21 130.4 9.7 83 363-445 13-95 (98)
90 3ucg_A Polyadenylate-binding p 99.7 6.8E-17 2.3E-21 126.5 10.9 79 366-445 7-85 (89)
91 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.8E-16 6.2E-21 127.7 13.7 83 363-447 13-95 (103)
92 2dh8_A DAZ-associated protein 99.7 5.8E-17 2E-21 131.1 10.6 87 362-449 13-99 (105)
93 2dgv_A HnRNP M, heterogeneous 99.7 8.6E-17 3E-21 126.7 11.2 82 364-447 7-88 (92)
94 1oo0_B CG8781-PA, drosophila Y 99.7 5.3E-17 1.8E-21 132.6 10.2 82 365-446 26-107 (110)
95 4a8x_A RNA-binding protein wit 99.7 4.3E-17 1.5E-21 127.3 9.3 81 365-445 4-85 (88)
96 2dhg_A TRNA selenocysteine ass 99.7 5.3E-17 1.8E-21 131.1 10.1 83 364-447 8-92 (104)
97 2khc_A Testis-specific RNP-typ 99.7 9.7E-17 3.3E-21 132.8 11.8 80 363-442 38-117 (118)
98 3s7r_A Heterogeneous nuclear r 99.7 9.7E-17 3.3E-21 124.9 11.1 78 364-442 10-87 (87)
99 2kt5_A RNA and export factor-b 99.7 3.5E-16 1.2E-20 130.6 15.1 86 362-448 32-117 (124)
100 2cq3_A RNA-binding protein 9; 99.7 1.9E-16 6.5E-21 127.6 12.9 84 363-448 13-96 (103)
101 2cqd_A RNA-binding region cont 99.7 1.4E-16 4.7E-21 131.4 12.3 83 363-446 15-97 (116)
102 1wi8_A EIF-4B, eukaryotic tran 99.7 8.6E-17 3E-21 129.8 10.8 82 364-447 14-96 (104)
103 2cq1_A PTB-like protein L; RRM 99.7 1.1E-16 3.8E-21 127.2 11.2 80 363-448 13-94 (101)
104 2ek1_A RNA-binding protein 12; 99.7 2.6E-17 8.7E-22 130.6 7.5 80 364-443 14-93 (95)
105 2mss_A Protein (musashi1); RNA 99.7 2.5E-17 8.7E-22 124.3 7.2 75 367-442 1-75 (75)
106 2lxi_A RNA-binding protein 10; 99.7 2.7E-17 9.4E-22 128.8 7.4 80 245-330 1-83 (91)
107 1p1t_A Cleavage stimulation fa 99.7 5.5E-17 1.9E-21 131.0 9.4 80 366-445 9-88 (104)
108 3n9u_C Cleavage and polyadenyl 99.7 8.5E-17 2.9E-21 139.2 11.0 80 364-443 54-135 (156)
109 2do0_A HnRNP M, heterogeneous 99.7 2.6E-16 8.8E-21 129.4 13.4 83 363-446 13-95 (114)
110 1u6f_A Tcubp1, RNA-binding pro 99.7 3.7E-16 1.3E-20 133.4 14.8 86 362-447 39-124 (139)
111 2ad9_A Polypyrimidine tract-bi 99.7 1E-16 3.6E-21 130.4 10.3 80 363-448 29-110 (119)
112 1x4d_A Matrin 3; structural ge 99.7 6.1E-17 2.1E-21 128.5 8.7 77 364-446 14-93 (102)
113 1s79_A Lupus LA protein; RRM, 99.7 4.7E-17 1.6E-21 130.3 8.1 75 366-442 12-86 (103)
114 3lqv_A PRE-mRNA branch site pr 99.7 1.3E-16 4.4E-21 131.4 10.8 77 364-443 7-83 (115)
115 2cqg_A TDP-43, TAR DNA-binding 99.7 3.4E-16 1.2E-20 126.1 13.0 85 363-449 13-97 (103)
116 3ex7_B RNA-binding protein 8A; 99.7 8.1E-17 2.8E-21 135.0 9.7 83 365-447 22-104 (126)
117 2rs2_A Musashi-1, RNA-binding 99.7 1.1E-16 3.8E-21 130.0 9.9 85 363-448 23-107 (109)
118 2wbr_A GW182, gawky, LD47780P; 99.7 1.6E-16 5.6E-21 119.5 9.7 73 244-328 6-79 (89)
119 1wex_A Hypothetical protein (r 99.7 1.8E-16 6.1E-21 126.8 10.6 79 363-447 13-93 (104)
120 2err_A Ataxin-2-binding protei 99.7 1.7E-16 5.7E-21 129.1 10.6 81 363-445 27-107 (109)
121 2dgw_A Probable RNA-binding pr 99.7 3.4E-16 1.2E-20 122.9 12.0 80 364-446 9-88 (91)
122 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.4E-16 8.3E-21 137.3 12.3 85 363-447 37-121 (156)
123 2ki2_A SS-DNA binding protein 99.7 2.6E-17 8.8E-22 129.1 5.3 81 366-447 2-82 (90)
124 1x4e_A RNA binding motif, sing 99.7 1.9E-17 6.3E-22 128.4 4.4 80 364-443 4-83 (85)
125 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.2E-17 2.1E-21 122.9 6.8 75 367-442 2-76 (77)
126 2m2b_A RNA-binding protein 10; 99.7 6.7E-17 2.3E-21 136.2 7.6 83 363-446 21-109 (131)
127 2cq4_A RNA binding motif prote 99.7 1.3E-16 4.3E-21 131.2 9.0 76 366-442 26-101 (114)
128 2nlw_A Eukaryotic translation 99.7 1.8E-16 6.1E-21 128.0 9.5 79 365-445 15-100 (105)
129 1x4a_A Splicing factor, argini 99.7 5.9E-16 2E-20 126.0 12.5 82 363-447 20-101 (109)
130 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.7E-16 9.3E-21 134.5 11.0 81 362-442 60-140 (140)
131 2lkz_A RNA-binding protein 5; 99.7 1.8E-17 6E-22 130.3 3.2 83 241-329 5-94 (95)
132 2cpi_A CCR4-NOT transcription 99.7 1.7E-16 5.8E-21 129.5 9.1 82 365-446 15-102 (111)
133 1wez_A HnRNP H', FTP-3, hetero 99.7 1.7E-16 5.9E-21 127.0 8.6 81 363-446 13-93 (102)
134 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6.3E-17 2.2E-21 129.4 5.8 81 363-445 17-98 (100)
135 1sjq_A Polypyrimidine tract-bi 99.7 4.3E-16 1.5E-20 123.4 10.4 77 243-331 14-93 (105)
136 1x4b_A Heterogeneous nuclear r 99.7 3.1E-16 1E-20 129.3 10.0 82 365-447 27-108 (116)
137 2a3j_A U1 small nuclear ribonu 99.7 4E-16 1.4E-20 129.5 10.5 80 364-446 28-111 (127)
138 2dis_A Unnamed protein product 99.7 3.6E-16 1.2E-20 127.4 10.1 83 365-447 8-94 (109)
139 2jwn_A Embryonic polyadenylate 99.7 3.4E-16 1.1E-20 130.8 10.0 80 366-446 37-116 (124)
140 2db1_A Heterogeneous nuclear r 99.7 3.5E-16 1.2E-20 129.0 9.7 77 364-442 16-95 (118)
141 2cpj_A Non-POU domain-containi 99.7 5.6E-16 1.9E-20 123.7 10.6 79 363-447 13-91 (99)
142 2cpy_A RNA-binding protein 12; 99.6 2.7E-16 9.2E-21 129.0 8.7 79 363-443 13-92 (114)
143 1iqt_A AUF1, heterogeneous nuc 99.6 1.5E-16 5E-21 120.1 6.5 75 367-442 1-75 (75)
144 1u6f_A Tcubp1, RNA-binding pro 99.6 4.6E-16 1.6E-20 132.8 10.3 85 241-331 38-123 (139)
145 1wg5_A Heterogeneous nuclear r 99.6 4.8E-16 1.6E-20 125.2 9.7 82 364-447 14-96 (104)
146 2jvr_A Nucleolar protein 3; RN 99.6 4.6E-16 1.6E-20 125.7 9.5 77 365-445 28-105 (111)
147 1why_A Hypothetical protein ri 99.6 6.4E-16 2.2E-20 122.9 10.2 77 364-446 16-94 (97)
148 2dnq_A RNA-binding protein 4B; 99.6 8.2E-16 2.8E-20 120.4 10.7 76 364-447 7-82 (90)
149 2ytc_A PRE-mRNA-splicing facto 99.6 7.2E-16 2.5E-20 119.4 10.2 73 364-442 11-84 (85)
150 1x5o_A RNA binding motif, sing 99.6 6.7E-16 2.3E-20 126.8 10.4 80 364-444 24-111 (114)
151 3s8s_A Histone-lysine N-methyl 99.6 5.8E-17 2E-21 131.5 4.0 80 244-329 5-85 (110)
152 1x4c_A Splicing factor, argini 99.6 1.4E-15 4.7E-20 123.5 12.0 77 364-447 14-95 (108)
153 2krb_A Eukaryotic translation 99.6 1.3E-16 4.4E-21 122.3 5.6 72 366-439 2-80 (81)
154 2hvz_A Splicing factor, argini 99.6 4.1E-16 1.4E-20 125.1 8.6 74 246-331 1-76 (101)
155 1fj7_A Nucleolin RBD1, protein 99.6 9.3E-16 3.2E-20 123.0 10.5 82 243-331 15-96 (101)
156 2dnp_A RNA-binding protein 14; 99.6 1.4E-15 4.7E-20 119.1 11.2 76 364-447 8-83 (90)
157 1wel_A RNA-binding protein 12; 99.6 1.9E-16 6.6E-21 132.1 6.6 80 363-443 23-102 (124)
158 2fc9_A NCL protein; structure 99.6 1E-15 3.6E-20 122.7 10.7 81 363-447 13-93 (101)
159 1fj7_A Nucleolin RBD1, protein 99.6 1.4E-16 4.8E-21 127.8 5.5 82 364-447 16-97 (101)
160 2hgl_A HNRPF protein, heteroge 99.6 4.5E-16 1.5E-20 130.7 8.8 77 364-442 43-122 (136)
161 1whx_A Hypothetical protein ri 99.6 5.6E-16 1.9E-20 126.3 8.9 77 366-448 11-87 (111)
162 3r27_A HnRNP L, heterogeneous 99.6 4.6E-16 1.6E-20 121.9 7.9 77 242-330 18-97 (100)
163 1x4g_A Nucleolysin TIAR; struc 99.6 1.3E-15 4.5E-20 123.9 10.8 77 365-447 25-101 (109)
164 1x4f_A Matrin 3; structural ge 99.6 3.3E-16 1.1E-20 126.0 6.9 78 363-446 23-103 (112)
165 2dnn_A RNA-binding protein 12; 99.6 6.8E-16 2.3E-20 124.5 8.8 74 366-442 17-90 (109)
166 2cpz_A CUG triplet repeat RNA- 99.6 2.7E-16 9.2E-21 129.4 6.5 84 242-331 22-106 (115)
167 2dgt_A RNA-binding protein 30; 99.6 2.8E-15 9.5E-20 117.9 12.1 76 364-447 9-84 (92)
168 2j8a_A Histone-lysine N-methyl 99.6 1.1E-15 3.8E-20 122.8 9.7 80 366-445 3-96 (136)
169 3q2s_C Cleavage and polyadenyl 99.6 6.1E-16 2.1E-20 143.1 9.4 79 365-443 68-148 (229)
170 2hvz_A Splicing factor, argini 99.6 9E-16 3.1E-20 123.1 9.1 76 366-446 1-76 (101)
171 2cpx_A Hypothetical protein FL 99.6 3.7E-16 1.3E-20 128.7 6.9 84 364-447 24-107 (115)
172 2fc8_A NCL protein; structure 99.6 1.8E-15 6.1E-20 121.6 10.8 82 363-447 13-94 (102)
173 2f3j_A RNA and export factor b 99.6 1.7E-15 6E-20 134.0 11.7 84 362-446 85-168 (177)
174 2lmi_A GRSF-1, G-rich sequence 99.6 3.5E-16 1.2E-20 126.8 6.5 79 363-443 9-90 (107)
175 2jvo_A Nucleolar protein 3; nu 99.6 1.4E-15 4.9E-20 123.1 10.1 76 363-446 29-104 (108)
176 2dgu_A Heterogeneous nuclear r 99.6 2.8E-15 9.7E-20 120.5 11.7 78 363-448 9-86 (103)
177 2e5j_A Methenyltetrahydrofolat 99.6 2.3E-15 8E-20 119.6 11.1 77 364-445 18-94 (97)
178 2cpx_A Hypothetical protein FL 99.6 2.1E-15 7.3E-20 124.0 11.0 83 243-331 23-106 (115)
179 2hzc_A Splicing factor U2AF 65 99.6 3.6E-15 1.2E-19 116.0 11.7 85 242-327 3-87 (87)
180 2la4_A Nuclear and cytoplasmic 99.6 1.1E-15 3.9E-20 122.5 8.8 74 365-444 27-100 (101)
181 1nu4_A U1A RNA binding domain; 99.6 7E-16 2.4E-20 122.8 7.5 80 364-446 7-90 (97)
182 3mdf_A Peptidyl-prolyl CIS-tra 99.6 2.3E-16 7.8E-21 122.2 4.5 79 243-327 5-84 (85)
183 2cpf_A RNA binding motif prote 99.6 5.9E-16 2E-20 123.4 6.9 83 243-331 3-89 (98)
184 2xnq_A Nuclear polyadenylated 99.6 3.4E-15 1.2E-19 118.4 11.0 74 364-445 21-95 (97)
185 3p5t_L Cleavage and polyadenyl 99.6 1.3E-16 4.3E-21 125.0 2.6 79 246-330 2-83 (90)
186 3md1_A Nuclear and cytoplasmic 99.6 2.9E-16 1E-20 121.0 4.6 79 246-330 2-81 (83)
187 1whw_A Hypothetical protein ri 99.6 4.5E-16 1.5E-20 124.4 5.9 83 243-331 6-89 (99)
188 1x5t_A Splicing factor 3B subu 99.6 4.4E-16 1.5E-20 123.7 5.8 83 243-331 3-87 (96)
189 1s79_A Lupus LA protein; RRM, 99.6 2.3E-16 7.8E-21 126.3 4.1 80 243-329 9-88 (103)
190 2mss_A Protein (musashi1); RNA 99.6 3.4E-16 1.2E-20 118.0 4.8 75 247-327 1-75 (75)
191 3lqv_A PRE-mRNA branch site pr 99.6 3.6E-16 1.2E-20 128.7 5.4 103 243-391 6-109 (115)
192 2jvr_A Nucleolar protein 3; RN 99.6 1.4E-15 4.8E-20 122.9 8.5 78 242-329 25-104 (111)
193 2cq2_A Hypothetical protein LO 99.6 2E-15 6.9E-20 121.4 9.4 77 364-446 24-107 (114)
194 2x1f_A MRNA 3'-END-processing 99.6 3.5E-16 1.2E-20 124.2 4.8 82 244-331 1-83 (96)
195 2cqh_A IGF-II mRNA-binding pro 99.6 2.1E-15 7.1E-20 118.9 9.2 77 364-447 7-85 (93)
196 1x4g_A Nucleolysin TIAR; struc 99.6 1.1E-14 3.8E-19 118.4 13.6 83 237-331 17-100 (109)
197 2kxn_B Transformer-2 protein h 99.6 2.1E-16 7.1E-21 132.3 3.2 83 242-330 43-126 (129)
198 2dnz_A Probable RNA-binding pr 99.6 5.9E-16 2E-20 122.7 5.6 82 244-331 4-86 (95)
199 3n9u_C Cleavage and polyadenyl 99.6 4.5E-16 1.5E-20 134.6 5.3 81 243-329 53-136 (156)
200 2la4_A Nuclear and cytoplasmic 99.6 1.6E-15 5.6E-20 121.5 8.2 77 241-329 23-100 (101)
201 2dgo_A Cytotoxic granule-assoc 99.6 7.7E-16 2.6E-20 126.7 6.4 85 242-332 12-97 (115)
202 2cqc_A Arginine/serine-rich sp 99.6 5.2E-16 1.8E-20 123.0 5.2 80 243-328 13-93 (95)
203 1fjc_A Nucleolin RBD2, protein 99.6 1.4E-15 4.7E-20 120.8 7.7 78 364-446 15-92 (96)
204 3s7r_A Heterogeneous nuclear r 99.6 3E-16 1E-20 122.1 3.7 81 241-327 7-87 (87)
205 3bs9_A Nucleolysin TIA-1 isofo 99.6 3E-16 1E-20 122.1 3.6 81 243-329 4-85 (87)
206 2fy1_A RNA-binding motif prote 99.6 1.4E-15 4.6E-20 125.0 7.7 82 243-331 5-87 (116)
207 2div_A TRNA selenocysteine ass 99.6 6.3E-16 2.2E-20 123.5 5.4 83 242-330 6-94 (99)
208 1wf1_A RNA-binding protein RAL 99.6 1.3E-14 4.5E-19 118.2 13.3 74 365-446 27-101 (110)
209 2diu_A KIAA0430 protein; struc 99.6 2.9E-15 9.8E-20 113.7 8.5 72 366-447 9-86 (96)
210 1x5u_A Splicing factor 3B subu 99.6 5.7E-16 1.9E-20 125.3 5.0 83 243-331 13-96 (105)
211 1x5s_A Cold-inducible RNA-bind 99.6 7.8E-16 2.7E-20 123.7 5.7 83 243-331 10-93 (102)
212 2cqb_A Peptidyl-prolyl CIS-tra 99.6 6.5E-16 2.2E-20 124.2 5.2 83 243-331 10-93 (102)
213 2pe8_A Splicing factor 45; RRM 99.6 5.9E-15 2E-19 118.2 10.8 80 364-443 7-92 (105)
214 1wex_A Hypothetical protein (r 99.6 2.4E-15 8.1E-20 120.3 8.4 77 243-331 13-92 (104)
215 2dgs_A DAZ-associated protein 99.6 4.7E-16 1.6E-20 124.2 4.3 83 243-331 8-90 (99)
216 2jrs_A RNA-binding protein 39; 99.6 3.7E-16 1.3E-20 126.6 3.7 83 242-330 23-106 (108)
217 3ucg_A Polyadenylate-binding p 99.6 5.5E-16 1.9E-20 121.2 4.4 81 243-329 4-84 (89)
218 2khc_A Testis-specific RNP-typ 99.6 6.3E-16 2.1E-20 127.9 5.0 80 242-327 37-117 (118)
219 2dha_A FLJ20171 protein; RRM d 99.6 2E-15 6.9E-20 124.4 8.0 76 365-442 23-102 (123)
220 2jwn_A Embryonic polyadenylate 99.6 1.7E-15 5.7E-20 126.5 7.6 85 241-331 32-116 (124)
221 2e44_A Insulin-like growth fac 99.6 5.4E-15 1.9E-19 117.3 10.2 78 365-446 15-93 (96)
222 2err_A Ataxin-2-binding protei 99.6 7.8E-16 2.7E-20 125.0 5.3 83 239-329 23-106 (109)
223 2dgp_A Bruno-like 4, RNA bindi 99.6 1.4E-15 4.7E-20 123.2 6.7 84 242-331 10-97 (106)
224 2rs2_A Musashi-1, RNA-binding 99.6 5.9E-16 2E-20 125.7 4.5 86 239-330 19-104 (109)
225 2ywk_A Putative RNA-binding pr 99.6 8E-16 2.7E-20 121.9 5.1 81 241-328 12-93 (95)
226 3zzy_A Polypyrimidine tract-bi 99.6 5.7E-15 2E-19 121.6 10.3 75 367-446 30-107 (130)
227 2ek1_A RNA-binding protein 12; 99.6 9.3E-16 3.2E-20 121.5 5.4 79 244-328 14-93 (95)
228 2dnm_A SRP46 splicing factor; 99.6 4E-16 1.4E-20 125.6 3.4 83 243-331 11-94 (103)
229 1x4d_A Matrin 3; structural ge 99.6 9E-16 3.1E-20 121.7 5.3 77 243-331 13-93 (102)
230 1x4h_A RNA-binding protein 28; 99.6 1.2E-15 4E-20 124.8 6.1 84 242-331 12-102 (111)
231 2cq1_A PTB-like protein L; RRM 99.6 3E-15 1E-19 118.8 8.3 77 243-331 13-92 (101)
232 2a3j_A U1 small nuclear ribonu 99.6 2.5E-15 8.4E-20 124.7 8.0 80 243-331 27-111 (127)
233 2e5h_A Zinc finger CCHC-type a 99.6 4.5E-16 1.5E-20 123.1 3.4 80 243-328 14-94 (94)
234 2hgn_A Heterogeneous nuclear r 99.6 6.8E-16 2.3E-20 130.0 4.7 79 365-446 46-124 (139)
235 2e5j_A Methenyltetrahydrofolat 99.6 2.7E-15 9.3E-20 119.2 7.9 77 243-330 17-94 (97)
236 2cqp_A RNA-binding protein 12; 99.6 1.2E-15 4.1E-20 121.6 5.9 80 244-329 14-94 (98)
237 2lcw_A RNA-binding protein FUS 99.4 1.2E-16 4.2E-21 131.7 0.0 82 365-446 7-96 (116)
238 3ns6_A Eukaryotic translation 99.6 2.8E-16 9.6E-21 125.5 2.1 79 244-328 5-91 (100)
239 2xnq_A Nuclear polyadenylated 99.6 4.8E-15 1.6E-19 117.5 9.2 75 241-329 18-94 (97)
240 2kvi_A Nuclear polyadenylated 99.6 2.9E-15 1E-19 118.7 7.9 76 364-447 9-85 (96)
241 2cpe_A RNA-binding protein EWS 99.6 8.8E-16 3E-20 125.9 5.1 85 241-331 11-104 (113)
242 2la6_A RNA-binding protein FUS 99.6 4.2E-16 1.4E-20 124.5 3.0 79 243-327 11-98 (99)
243 4a8x_A RNA-binding protein wit 99.6 1E-15 3.5E-20 119.4 5.1 80 244-329 3-84 (88)
244 1p27_B RNA-binding protein 8A; 99.6 4.9E-16 1.7E-20 125.9 3.3 82 242-329 20-102 (106)
245 3egn_A RNA-binding protein 40; 99.6 1.7E-15 5.8E-20 129.8 6.8 83 364-446 44-131 (143)
246 2ad9_A Polypyrimidine tract-bi 99.6 1.9E-15 6.4E-20 123.0 6.6 78 242-331 28-108 (119)
247 2cph_A RNA binding motif prote 99.6 1.3E-15 4.3E-20 123.7 5.5 84 242-331 12-98 (107)
248 1iqt_A AUF1, heterogeneous nuc 99.6 9E-16 3.1E-20 115.7 4.3 75 247-327 1-75 (75)
249 2cq0_A Eukaryotic translation 99.6 6.2E-16 2.1E-20 124.5 3.6 84 242-331 12-96 (103)
250 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.2E-16 7.6E-21 126.2 0.9 83 241-330 15-98 (100)
251 2m2b_A RNA-binding protein 10; 99.6 8.6E-16 2.9E-20 129.4 4.5 83 242-331 20-109 (131)
252 2dhg_A TRNA selenocysteine ass 99.6 1.7E-15 6E-20 122.1 6.2 82 243-331 7-91 (104)
253 2do4_A Squamous cell carcinoma 99.6 1.1E-15 3.8E-20 122.3 5.0 82 242-330 14-96 (100)
254 2xs2_A Deleted in azoospermia- 99.6 3.2E-15 1.1E-19 120.1 7.6 78 366-446 10-87 (102)
255 2d9p_A Polyadenylate-binding p 99.6 1E-15 3.5E-20 123.3 4.5 81 243-331 13-94 (103)
256 2cpd_A Apobec-1 stimulating pr 99.6 2.6E-14 8.8E-19 114.0 12.7 76 364-447 14-91 (99)
257 1sjr_A Polypyrimidine tract-bi 99.6 9.6E-15 3.3E-19 124.9 10.6 77 366-446 47-125 (164)
258 2cq4_A RNA binding motif prote 99.6 4.9E-16 1.7E-20 127.6 2.4 82 241-328 21-102 (114)
259 2dgv_A HnRNP M, heterogeneous 99.6 1.6E-15 5.4E-20 119.4 5.2 81 243-331 6-87 (92)
260 2ytc_A PRE-mRNA-splicing facto 99.6 3.6E-15 1.2E-19 115.4 7.1 73 243-327 10-84 (85)
261 2hgm_A HNRPF protein, heteroge 99.6 3.2E-15 1.1E-19 123.4 7.2 77 364-443 41-119 (126)
262 1x4a_A Splicing factor, argini 99.6 5.6E-15 1.9E-19 120.2 8.6 80 243-331 20-100 (109)
263 2e5i_A Heterogeneous nuclear r 99.6 1.2E-14 4E-19 119.3 10.5 74 367-446 27-103 (124)
264 1x5p_A Negative elongation fac 99.6 2.2E-14 7.6E-19 113.9 11.9 76 364-447 14-89 (97)
265 2dnh_A Bruno-like 5, RNA bindi 99.6 1.2E-15 4.1E-20 123.4 4.5 82 243-331 13-98 (105)
266 1oo0_B CG8781-PA, drosophila Y 99.6 7.8E-16 2.7E-20 125.6 3.4 82 242-329 23-105 (110)
267 2e5g_A U6 snRNA-specific termi 99.6 7.9E-15 2.7E-19 115.8 9.1 77 365-447 8-84 (94)
268 1p1t_A Cleavage stimulation fa 99.6 8.4E-16 2.9E-20 124.0 3.5 84 242-331 5-89 (104)
269 3ulh_A THO complex subunit 4; 99.6 1.2E-15 4.2E-20 123.7 4.4 79 243-328 27-106 (107)
270 2jvo_A Nucleolar protein 3; nu 99.6 5.3E-15 1.8E-19 119.7 7.9 77 240-330 26-103 (108)
271 1wg1_A KIAA1579 protein, homol 99.6 8.2E-15 2.8E-19 114.0 8.7 75 365-446 5-79 (88)
272 2cqd_A RNA-binding region cont 99.6 3.3E-15 1.1E-19 123.0 6.7 83 241-330 13-96 (116)
273 2cqi_A Nucleolysin TIAR; RNA r 99.6 2E-14 7E-19 115.5 11.1 82 242-331 12-94 (103)
274 1x4e_A RNA binding motif, sing 99.6 2.8E-16 9.7E-21 121.7 0.1 80 243-328 3-83 (85)
275 1why_A Hypothetical protein ri 99.6 9E-15 3.1E-19 116.2 8.8 76 243-330 15-93 (97)
276 2dng_A Eukaryotic translation 99.6 1.7E-15 5.9E-20 121.9 4.7 82 243-331 13-94 (103)
277 1whx_A Hypothetical protein ri 99.6 5.8E-15 2E-19 120.2 7.8 76 242-329 7-83 (111)
278 2dis_A Unnamed protein product 99.6 4.7E-15 1.6E-19 120.7 7.2 83 243-331 6-93 (109)
279 1wi8_A EIF-4B, eukaryotic tran 99.6 1.5E-15 5.2E-20 122.4 4.1 82 243-331 13-95 (104)
280 2do0_A HnRNP M, heterogeneous 99.6 3.9E-15 1.3E-19 122.3 6.5 83 242-331 12-95 (114)
281 1x4b_A Heterogeneous nuclear r 99.5 2.7E-15 9.1E-20 123.6 5.3 84 242-331 24-107 (116)
282 2dnq_A RNA-binding protein 4B; 99.5 1.6E-14 5.6E-19 112.9 9.5 75 243-331 6-81 (90)
283 1wel_A RNA-binding protein 12; 99.5 1.3E-15 4.6E-20 126.9 3.4 80 243-328 23-102 (124)
284 2fc9_A NCL protein; structure 99.5 2.8E-15 9.5E-20 120.2 4.9 79 242-330 12-91 (101)
285 2dgx_A KIAA0430 protein; RRM d 99.5 2.4E-14 8.3E-19 113.3 10.3 75 244-330 8-90 (96)
286 3ex7_B RNA-binding protein 8A; 99.5 1.3E-15 4.6E-20 127.5 3.1 84 242-331 19-103 (126)
287 2nlw_A Eukaryotic translation 99.5 1.9E-15 6.5E-20 121.9 3.8 81 243-331 13-101 (105)
288 2krb_A Eukaryotic translation 99.5 1.6E-15 5.4E-20 116.1 3.1 72 245-324 1-80 (81)
289 1x4f_A Matrin 3; structural ge 99.5 3.3E-15 1.1E-19 120.1 5.1 78 242-331 22-103 (112)
290 2dh8_A DAZ-associated protein 99.5 2E-15 6.8E-20 122.0 3.7 84 242-331 13-96 (105)
291 3beg_B Splicing factor, argini 99.5 7.6E-15 2.6E-19 120.4 7.1 73 365-444 16-93 (115)
292 2cpy_A RNA-binding protein 12; 99.5 1.5E-15 5.2E-20 124.5 2.8 81 243-330 13-94 (114)
293 2ki2_A SS-DNA binding protein 99.5 9.4E-16 3.2E-20 120.1 1.4 79 246-331 2-81 (90)
294 2cpj_A Non-POU domain-containi 99.5 5.4E-15 1.8E-19 118.0 5.8 77 243-331 13-90 (99)
295 2dnp_A RNA-binding protein 14; 99.5 3.4E-14 1.2E-18 111.1 10.3 76 242-331 6-82 (90)
296 2db1_A Heterogeneous nuclear r 99.5 2.2E-15 7.5E-20 124.2 3.5 79 243-328 15-96 (118)
297 2kt5_A RNA and export factor-b 99.5 1.3E-14 4.3E-19 121.1 8.1 82 242-330 32-114 (124)
298 2cq3_A RNA-binding protein 9; 99.5 2.3E-14 8E-19 115.2 9.3 82 242-331 12-94 (103)
299 2cqg_A TDP-43, TAR DNA-binding 99.5 6.6E-15 2.3E-19 118.4 6.1 83 242-331 12-94 (103)
300 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1.3E-15 4.4E-20 115.5 1.8 75 246-327 1-76 (77)
301 1wg5_A Heterogeneous nuclear r 99.5 3.1E-15 1E-19 120.4 4.0 80 243-329 13-93 (104)
302 2dgw_A Probable RNA-binding pr 99.5 4.3E-15 1.5E-19 116.6 4.7 80 243-330 8-87 (91)
303 1x4c_A Splicing factor, argini 99.5 3.4E-14 1.2E-18 115.2 10.2 76 243-331 13-94 (108)
304 2dgu_A Heterogeneous nuclear r 99.5 6.4E-14 2.2E-18 112.6 11.6 75 243-331 9-84 (103)
305 1fjc_A Nucleolin RBD2, protein 99.5 5.1E-15 1.7E-19 117.4 5.0 78 242-330 13-91 (96)
306 2lea_A Serine/arginine-rich sp 99.5 2.6E-15 9E-20 126.8 3.4 84 242-331 44-128 (135)
307 1wez_A HnRNP H', FTP-3, hetero 99.5 1.3E-15 4.3E-20 121.9 1.3 79 243-329 13-91 (102)
308 2cq2_A Hypothetical protein LO 99.5 2.6E-14 8.8E-19 114.9 8.8 77 242-330 22-106 (114)
309 3v4m_A Splicing factor U2AF 65 99.5 2.8E-14 9.5E-19 114.3 8.9 80 364-443 4-95 (105)
310 2hgl_A HNRPF protein, heteroge 99.5 2.5E-15 8.6E-20 126.2 2.9 80 242-328 41-123 (136)
311 2hzc_A Splicing factor U2AF 65 99.5 2.3E-14 7.9E-19 111.4 8.1 70 365-441 6-86 (87)
312 1h2v_Z 20 kDa nuclear CAP bind 99.5 4.9E-15 1.7E-19 129.0 4.5 84 242-331 36-120 (156)
313 2cqh_A IGF-II mRNA-binding pro 99.5 1.2E-14 4.2E-19 114.4 6.3 76 243-330 6-83 (93)
314 2diu_A KIAA0430 protein; struc 99.5 4.3E-14 1.5E-18 107.3 8.9 73 244-332 7-86 (96)
315 2cpd_A Apobec-1 stimulating pr 99.5 5.4E-14 1.9E-18 112.1 10.1 76 242-331 12-90 (99)
316 3egn_A RNA-binding protein 40; 99.5 1E-14 3.5E-19 124.9 6.2 88 243-331 43-131 (143)
317 2kn4_A Immunoglobulin G-bindin 99.5 1E-14 3.5E-19 127.3 6.2 82 243-330 68-150 (158)
318 2dnn_A RNA-binding protein 12; 99.5 3.7E-15 1.3E-19 120.1 3.1 77 244-328 15-91 (109)
319 3d2w_A TAR DNA-binding protein 99.5 4.2E-14 1.4E-18 110.0 8.7 73 364-445 10-84 (89)
320 2dnl_A Cytoplasmic polyadenyla 99.5 3.1E-14 1.1E-18 116.6 8.4 76 364-442 7-85 (114)
321 2dgt_A RNA-binding protein 30; 99.5 4.7E-14 1.6E-18 110.8 8.9 76 242-331 7-83 (92)
322 2bz2_A Negative elongation fac 99.5 5.6E-14 1.9E-18 116.0 9.6 75 364-446 38-112 (121)
323 2lmi_A GRSF-1, G-rich sequence 99.5 3.1E-15 1.1E-19 121.1 1.8 79 243-328 9-90 (107)
324 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 8.9E-15 3.1E-19 125.0 4.8 80 242-327 60-140 (140)
325 2fc8_A NCL protein; structure 99.5 6.4E-15 2.2E-19 118.3 3.6 81 242-331 12-93 (102)
326 1rk8_A CG8781-PA, CG8781-PA pr 99.5 6.2E-15 2.1E-19 129.5 3.7 82 243-330 70-152 (165)
327 2cpi_A CCR4-NOT transcription 99.5 3.9E-15 1.3E-19 121.4 2.2 83 243-331 13-102 (111)
328 2dha_A FLJ20171 protein; RRM d 99.5 1E-14 3.4E-19 120.2 4.6 80 242-328 20-103 (123)
329 2lcw_A RNA-binding protein FUS 99.2 1.7E-15 6E-20 124.7 0.0 84 242-331 4-96 (116)
330 1nu4_A U1A RNA binding domain; 99.5 3.2E-14 1.1E-18 113.0 7.3 80 242-330 5-89 (97)
331 2hgm_A HNRPF protein, heteroge 99.5 3.2E-15 1.1E-19 123.3 1.5 77 243-327 40-118 (126)
332 2f3j_A RNA and export factor b 99.5 3.8E-14 1.3E-18 125.4 8.1 80 243-329 86-166 (177)
333 1x5p_A Negative elongation fac 99.5 1.2E-13 4.2E-18 109.6 10.0 75 243-331 13-88 (97)
334 3q2s_C Cleavage and polyadenyl 99.5 7.4E-15 2.5E-19 135.7 3.1 80 244-329 67-149 (229)
335 1x5o_A RNA binding motif, sing 99.5 1.4E-14 4.7E-19 119.0 4.3 80 242-328 22-110 (114)
336 2e5g_A U6 snRNA-specific termi 99.5 1.1E-13 3.8E-18 109.1 9.1 77 243-331 6-83 (94)
337 2kvi_A Nuclear polyadenylated 99.5 3E-14 1E-18 112.9 5.8 75 242-330 7-83 (96)
338 3ue2_A Poly(U)-binding-splicin 99.5 8.4E-14 2.9E-18 113.6 8.5 78 365-442 20-106 (118)
339 2hgn_A Heterogeneous nuclear r 99.5 3.6E-15 1.2E-19 125.6 0.3 81 241-329 42-122 (139)
340 1wg1_A KIAA1579 protein, homol 99.5 2.3E-14 8E-19 111.4 4.5 74 243-329 3-77 (88)
341 3pgw_S U1-70K; protein-RNA com 99.5 5.4E-14 1.8E-18 142.4 8.3 82 244-331 101-183 (437)
342 1sjr_A Polypyrimidine tract-bi 99.5 1.2E-13 4E-18 118.2 9.1 77 244-330 45-124 (164)
343 3u1l_A PRE-mRNA-splicing facto 99.5 8.1E-14 2.8E-18 127.7 8.3 77 364-446 133-230 (240)
344 2dit_A HIV TAT specific factor 99.5 4.4E-13 1.5E-17 109.3 11.9 80 363-446 13-103 (112)
345 1wf1_A RNA-binding protein RAL 99.5 6.1E-14 2.1E-18 114.2 6.3 73 244-330 26-100 (110)
346 2voo_A Lupus LA protein; RNA-b 99.5 2E-13 6.7E-18 122.7 10.2 78 366-445 110-187 (193)
347 1wf0_A TDP-43, TAR DNA-binding 99.5 6.2E-14 2.1E-18 109.1 5.8 76 365-447 5-80 (88)
348 2xs2_A Deleted in azoospermia- 99.4 8.2E-15 2.8E-19 117.7 0.6 79 242-328 6-84 (102)
349 2e44_A Insulin-like growth fac 99.4 1.6E-13 5.5E-18 108.7 8.0 78 244-330 14-92 (96)
350 2i2y_A Fusion protein consists 99.4 2E-13 6.9E-18 117.8 9.3 76 242-329 70-147 (150)
351 3beg_B Splicing factor, argini 99.4 1.3E-13 4.4E-18 113.0 6.3 69 243-324 14-83 (115)
352 1jmt_A Splicing factor U2AF 35 99.4 7.2E-14 2.5E-18 111.8 4.5 72 370-442 20-103 (104)
353 3zzy_A Polypyrimidine tract-bi 99.4 2.4E-13 8.1E-18 111.9 7.3 76 244-330 27-106 (130)
354 2e5i_A Heterogeneous nuclear r 99.4 4.4E-13 1.5E-17 110.0 8.5 73 246-330 26-102 (124)
355 2dnl_A Cytoplasmic polyadenyla 99.4 1.2E-13 4.2E-18 113.0 4.3 75 243-326 6-84 (114)
356 2bz2_A Negative elongation fac 99.4 3.1E-13 1.1E-17 111.5 6.4 74 243-330 37-111 (121)
357 2j8a_A Histone-lysine N-methyl 99.4 1E-13 3.6E-18 111.4 2.5 76 246-327 3-93 (136)
358 3s6e_A RNA-binding protein 39; 99.4 2E-12 6.9E-17 104.6 9.8 75 364-442 6-90 (114)
359 2voo_A Lupus LA protein; RNA-b 99.4 2.2E-13 7.7E-18 122.3 4.5 83 242-331 106-188 (193)
360 3d2w_A TAR DNA-binding protein 99.4 8.8E-13 3E-17 102.4 7.1 76 242-330 8-84 (89)
361 3u1l_A PRE-mRNA-splicing facto 99.3 8.2E-13 2.8E-17 121.0 6.4 78 242-331 131-230 (240)
362 1wf0_A TDP-43, TAR DNA-binding 99.3 8.4E-13 2.9E-17 102.6 5.5 76 243-331 3-79 (88)
363 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.3E-11 4.5E-16 97.3 10.7 75 366-447 11-92 (100)
364 3v4m_A Splicing factor U2AF 65 99.3 1.6E-12 5.4E-17 104.1 5.2 66 475-540 2-78 (105)
365 2pe8_A Splicing factor 45; RRM 99.3 2E-12 6.8E-17 103.4 4.9 79 243-328 6-92 (105)
366 3tht_A Alkylated DNA repair pr 99.3 1E-11 3.6E-16 120.1 9.3 76 362-443 15-97 (345)
367 3s6e_A RNA-binding protein 39; 99.3 3E-12 1E-16 103.6 4.2 67 474-540 3-74 (114)
368 2dit_A HIV TAT specific factor 99.2 2.4E-11 8.3E-16 98.9 7.5 78 243-330 13-102 (112)
369 3tht_A Alkylated DNA repair pr 99.1 9.9E-11 3.4E-15 113.2 8.3 74 242-327 15-96 (345)
370 1jmt_A Splicing factor U2AF 35 99.1 5.9E-12 2E-16 100.6 -1.1 71 250-327 20-103 (104)
371 3ue2_A Poly(U)-binding-splicin 99.1 8.3E-11 2.9E-15 95.8 4.1 79 243-327 18-106 (118)
372 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.4E-09 4.9E-14 85.6 10.4 73 245-331 10-91 (100)
373 1owx_A Lupus LA protein, SS-B, 99.0 9E-10 3.1E-14 88.9 8.2 74 363-442 16-93 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.0 1.1E-09 3.8E-14 82.3 7.7 71 367-446 9-87 (91)
375 3dxb_A Thioredoxin N-terminall 99.0 1.9E-09 6.4E-14 99.4 9.4 67 377-443 141-211 (222)
376 1ufw_A Synaptojanin 2; RNP dom 98.8 8.1E-09 2.8E-13 78.0 6.9 69 366-443 16-93 (95)
377 1owx_A Lupus LA protein, SS-B, 98.7 1.8E-08 6.3E-13 81.2 6.5 72 243-326 16-92 (121)
378 2l9w_A U4/U6 snRNA-associated- 98.7 1.2E-07 4E-12 72.9 9.4 72 365-442 21-97 (117)
379 2dnr_A Synaptojanin-1; RRM dom 98.6 4.8E-08 1.6E-12 73.5 6.2 73 244-330 6-86 (91)
380 1ufw_A Synaptojanin 2; RNP dom 98.5 1.2E-07 4E-12 71.7 5.1 70 244-327 14-92 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.3 2E-06 7E-11 66.1 8.6 76 244-326 20-96 (117)
382 2dhx_A Poly (ADP-ribose) polym 98.2 8.5E-06 2.9E-10 62.3 8.9 74 244-326 7-80 (104)
383 3dxb_A Thioredoxin N-terminall 98.1 1E-06 3.4E-11 81.0 3.3 66 257-328 141-211 (222)
384 1wey_A Calcipressin 1; structu 98.1 1.2E-05 4.1E-10 61.8 7.5 74 364-443 4-82 (104)
385 1uw4_A UPF3X; nonsense mediate 97.6 0.00022 7.4E-09 54.0 7.2 67 366-432 2-70 (91)
386 1wwh_A Nucleoporin 35, nucleop 97.4 0.00051 1.8E-08 54.4 7.6 71 365-443 24-95 (119)
387 1whv_A Poly(A)-specific ribonu 97.4 0.001 3.5E-08 50.1 8.6 54 366-428 17-70 (100)
388 1wey_A Calcipressin 1; structu 97.2 0.0012 4.1E-08 50.8 7.9 72 245-328 5-82 (104)
389 2dhx_A Poly (ADP-ribose) polym 97.2 0.0044 1.5E-07 47.4 10.5 69 366-443 9-82 (104)
390 1wwh_A Nucleoporin 35, nucleop 97.1 0.0016 5.5E-08 51.6 7.8 73 242-327 21-94 (119)
391 3ctr_A Poly(A)-specific ribonu 96.8 0.0021 7E-08 48.7 5.5 53 367-428 8-60 (101)
392 2l08_A Regulator of nonsense t 96.6 0.0018 6E-08 49.3 4.2 77 366-442 10-93 (97)
393 3p3d_A Nucleoporin 53; structu 96.4 0.0063 2.2E-07 48.8 6.2 75 366-442 8-96 (132)
394 1uw4_A UPF3X; nonsense mediate 96.3 0.0042 1.4E-07 46.9 4.5 64 246-319 2-72 (91)
395 1whv_A Poly(A)-specific ribonu 96.2 0.0053 1.8E-07 46.3 4.4 52 246-312 17-69 (100)
396 3p3d_A Nucleoporin 53; structu 95.8 0.0069 2.4E-07 48.6 3.8 82 245-327 7-96 (132)
397 3ctr_A Poly(A)-specific ribonu 95.5 0.0041 1.4E-07 47.1 1.5 53 246-313 7-60 (101)
398 3pq1_A Poly(A) RNA polymerase; 94.8 0.0089 3E-07 59.8 1.7 66 240-318 48-114 (464)
399 3pq1_A Poly(A) RNA polymerase; 94.5 0.023 7.8E-07 56.9 3.9 54 366-425 54-107 (464)
400 2l08_A Regulator of nonsense t 93.6 0.039 1.3E-06 41.9 2.7 70 245-319 9-80 (97)
401 3d45_A Poly(A)-specific ribonu 83.8 2.5 8.7E-05 43.0 8.0 54 366-428 441-494 (507)
402 3d45_A Poly(A)-specific ribonu 69.9 4.8 0.00016 41.0 5.3 54 245-313 440-494 (507)
403 4eyt_A Telomerase associated p 60.7 45 0.0016 24.2 8.3 54 366-427 13-66 (129)
404 2g0c_A ATP-dependent RNA helic 39.5 46 0.0016 23.4 4.8 58 376-442 12-74 (76)
405 4e8u_A Putative uncharacterize 37.8 58 0.002 27.4 5.6 49 367-418 14-73 (172)
406 3zzp_A TS9, ribosomal protein 35.1 70 0.0024 22.8 5.0 62 293-391 5-70 (77)
407 3h7h_B Transcription elongatio 31.2 40 0.0014 25.8 3.4 34 392-430 41-74 (106)
408 3fry_A Probable copper-exporti 30.7 1.3E+02 0.0043 20.4 6.5 53 367-426 8-60 (73)
409 3hhl_A RPA0582; alpha-beta-bar 25.2 1.1E+02 0.0037 24.8 5.2 67 470-536 17-103 (143)
410 2fiu_A Conserved hypothetical 25.0 47 0.0016 25.0 2.8 46 492-537 14-70 (99)
411 3lo3_A Uncharacterized conserv 21.4 65 0.0022 23.9 2.9 46 492-537 13-69 (94)
412 1yo3_A Dynein light chain 1; s 20.7 80 0.0027 24.0 3.3 39 499-542 49-90 (102)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.9e-36 Score=293.78 Aligned_cols=221 Identities=23% Similarity=0.314 Sum_probs=191.1
Q ss_pred hhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 240 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 240 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
....+.++|||+|||+++|+++|+++|+.|| | ..+.++.++|||||+|.+.++|.+|+ .|+|..|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i------------~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 83 (284)
T 3smz_A 17 RQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-L------------KYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLR 83 (284)
T ss_dssp HHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-E------------EEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-C------------EEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 3456789999999999999999999999998 4 44555889999999999999999999 89999999
Q ss_pred CceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEe
Q 009052 319 GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLV 398 (545)
Q Consensus 319 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~ 398 (545)
|+.|.|.+... ..+|||+|||..+++++|+++|+.||.|..|.++
T Consensus 84 g~~i~v~~~~~-----------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~ 128 (284)
T 3smz_A 84 ERELSVQLQPT-----------------------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLV 128 (284)
T ss_dssp TEECEEEECCC-----------------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred CeEEEEEecCC-----------------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEE
Confidence 99999986321 1489999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCc
Q 009052 399 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPS 478 (545)
Q Consensus 399 ~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (545)
.++.+|.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.|+...... ....+.
T Consensus 129 ~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~------------------------~~~~~~ 184 (284)
T 3smz_A 129 YSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT------------------------PALLHS 184 (284)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC------------------------TTTTSC
T ss_pred eeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC------------------------cccCCc
Confidence 99889999999999999999999999999999999999999999554321 123567
Q ss_pred eeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee--------cCCceEEEEeCCCCCcCcccccc
Q 009052 479 KVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT--------FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 479 ~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v--------~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
.+|+|.|+ +..+++. ++|+++|++||.|..+ ...|+|||+|.+.++|.+|+..+
T Consensus 185 ~~l~v~nl--p~~~~~~-------~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 246 (284)
T 3smz_A 185 RCLCVDRL--PPGFNDV-------DALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQA 246 (284)
T ss_dssp SEEEEECC--CTTCCCH-------HHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHH
T ss_pred cEEEEecC--CcccCCH-------HHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHh
Confidence 78999998 4444332 3999999999999888 24799999999999997776544
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.6e-35 Score=288.36 Aligned_cols=227 Identities=16% Similarity=0.244 Sum_probs=177.0
Q ss_pred hhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecC
Q 009052 240 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEG 319 (545)
Q Consensus 240 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g 319 (545)
......++|||+|||+++|+++|+++|+.||.|..+. +.. ....++|||||+|.+.++|.+|+.+++..|.|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~-------i~~-~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g 107 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVD-------VAD-SLKKNFRFARIEFARYDGALAAITKTHKVVGQ 107 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEE-------EEE-CTTSSSEEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EEE-CCCCCcEEEEEEECCHHHHHHHHHhCCcEeCC
Confidence 3456789999999999999999999999999764432 111 11225899999999999999999999999999
Q ss_pred ceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-CccEEEEe
Q 009052 320 APVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFG-PLRGFDLV 398 (545)
Q Consensus 320 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~i~ 398 (545)
+.|.|.++. .++|||+|||..+++++|.++|+.|| .|..|.|+
T Consensus 108 ~~i~v~~~~------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 151 (292)
T 2ghp_A 108 NEIIVSHLT------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLP 151 (292)
T ss_dssp EECEEEECC------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC
T ss_pred cEEEEEECC------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEE
Confidence 999998642 25899999999999999999999999 99999999
Q ss_pred ecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCc
Q 009052 399 KDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPS 478 (545)
Q Consensus 399 ~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (545)
.++ .|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+....... .....+.
T Consensus 152 ~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~--------------------~~~~~~~ 210 (292)
T 2ghp_A 152 SLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT--------------------DSATLEG 210 (292)
T ss_dssp --------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-----------------------------CCTT
T ss_pred eCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc--------------------cccCCCC
Confidence 885 4788999999999999999999999999999999999999655432111 1234566
Q ss_pred eeEEecCCCCccc-CCChHHHHHHHHHHHHHHhccCCceee-----c-----CCceEEEEeCCCCCcCccccccc
Q 009052 479 KVVCLTQVVSADE-LKDDEEYEEILEDMRQEGGKFAFCSPT-----F-----CYKESGLIYTDRRLHNPQFVYFY 542 (545)
Q Consensus 479 ~~~~l~n~~~~~~-l~~~~~~~~~~~~l~~~f~~fG~V~~v-----~-----~~g~afV~F~~~e~A~a~~~~~~ 542 (545)
.+|+|.|+ +.. +++ ++|+++|++||.|..| . ..|+|||+|.+.++|.+|+ .+.
T Consensus 211 ~~l~v~nl--p~~~~t~--------~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 211 REIMIRNL--STELLDE--------NLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp TEEEEEEE--CTTTCCH--------HHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred ceEEEECC--CcccCCH--------HHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 78888888 444 333 3899999999999999 1 2689999999999998777 443
No 3
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=4e-32 Score=248.70 Aligned_cols=193 Identities=49% Similarity=0.838 Sum_probs=160.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCceeE
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 323 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l~ 323 (545)
..++|||+|||+++|+++|+++|+.||.|.++.. .++..|.++.++.++|||||+|.+.++|.+||.|+|..|.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~-~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCS-SSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhccccc-CCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEE
Confidence 5689999999999999999999999999987542 233468999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCC
Q 009052 324 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 403 (545)
Q Consensus 324 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~ 403 (545)
|.++..+..............+ ...........++|||+|||..+++++|+++|++||.|..|.++.++.+
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVP---------GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 152 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCT---------TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT
T ss_pred EeCCCCCCCCCCCcCCCcCCCC---------CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC
Confidence 9998776433221111100000 0011122345578999999999999999999999999999999999889
Q ss_pred CCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCC
Q 009052 404 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 446 (545)
Q Consensus 404 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 446 (545)
|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.+..
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999997654
No 4
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.7e-32 Score=243.87 Aligned_cols=170 Identities=53% Similarity=0.950 Sum_probs=152.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCcee
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l 322 (545)
++.++|||+|||+++|+++|+++|+.||.|.++. ..++..|.++.++.++|||||+|.++++|.+|+.++|..|.|++|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~-~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLT-QAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCC-SSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccc-cCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCcee
Confidence 3578999999999999999999999999887643 122336889999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCC
Q 009052 323 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE 402 (545)
Q Consensus 323 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~ 402 (545)
.|.++...... ....+|||+|||..+++++|+++|++||.|..|.++.++.
T Consensus 81 ~v~~~~~~~~~-----------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 131 (172)
T 2g4b_A 81 KIRRPHDYQPL-----------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 131 (172)
T ss_dssp EEECCSSCCCC-----------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT
T ss_pred eecCCcccCCC-----------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC
Confidence 99986544321 1135899999999999999999999999999999999988
Q ss_pred CCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 403 TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 403 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.||
T Consensus 132 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 132 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999999999999999999999999999999999999998
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=1.7e-32 Score=253.50 Aligned_cols=167 Identities=20% Similarity=0.359 Sum_probs=143.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+++|+++|+++|++||.|.++. ++.+..++.++|||||+|.+.++|.+|+ .+++..+.|+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIR------VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEE------EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 4568999999999999999999999999876654 3333446778999999999999999999 89999999999
Q ss_pred eEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecC
Q 009052 322 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR 401 (545)
Q Consensus 322 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~ 401 (545)
|.|.++........ ....+|||+|||..+++++|+++|+.||.|+.|.|+.+.
T Consensus 87 i~~~~~~~~~~~~~---------------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~ 139 (213)
T 4f02_A 87 VRIMWSQRDPSLRK---------------------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 139 (213)
T ss_dssp CEEEECCCCTHHHH---------------------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred cccccccccccccc---------------------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC
Confidence 99987654321110 112489999999999999999999999999999999884
Q ss_pred CCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 402 ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 402 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
+.++|||||+|.+.++|.+||+.|||..|+|+.|.|.|+..
T Consensus 140 --~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 140 --NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp --TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred --CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 45799999999999999999999999999999999999943
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=7.7e-32 Score=239.41 Aligned_cols=164 Identities=22% Similarity=0.349 Sum_probs=143.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
++|||+|||+++|+++|+++|+.||.|..+. +.....+.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~-------i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 73 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIK-------IMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKI 73 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEE-------EECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEE-------EEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEE
Confidence 5899999999999999999999999865543 222234667899999999999999999 99999999999999
Q ss_pred eCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCC
Q 009052 325 RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG 404 (545)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g 404 (545)
.++..... .......+|||+|||..+++++|+++|++||.|..+.++.++.+|
T Consensus 74 ~~~~~~~~---------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~ 126 (166)
T 3md3_A 74 NWAFQSQQ---------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG 126 (166)
T ss_dssp EECCCCCC---------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC
T ss_pred EEcCCCCC---------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCC
Confidence 98654321 111233589999999999999999999999999999999998899
Q ss_pred CcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 405 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 405 ~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 127 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 127 SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999999999999999999999984
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.1e-31 Score=238.94 Aligned_cols=164 Identities=21% Similarity=0.334 Sum_probs=144.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
+.++|||+|||+++|+++|+++|+.||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .|+|..+.|+.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 75 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCR------IMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRL 75 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEE------CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEE
Confidence 468999999999999999999999999876543 2333335667899999999999999999 799999999999
Q ss_pred EEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCC
Q 009052 323 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE 402 (545)
Q Consensus 323 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~ 402 (545)
.|.++..... .....+|+|+|||..+++++|+++|++||.|..+.++.++.
T Consensus 76 ~v~~~~~~~~-----------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 76 KVSYARPGGE-----------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp EEEECCCCSS-----------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred EEEecCCCcc-----------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 9998654321 11235899999999999999999999999999999999988
Q ss_pred CCCcceEEEEEecChHHHHHHHHHhCCCccCC--eEEEEEEc
Q 009052 403 TGNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRA 442 (545)
Q Consensus 403 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~l~v~~a 442 (545)
+|.++|||||+|.+.++|.+|+..|||..|.| +.|.|.||
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 89999999999999999999999999999988 99999986
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.1e-31 Score=245.45 Aligned_cols=177 Identities=23% Similarity=0.390 Sum_probs=145.1
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCc
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 320 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~ 320 (545)
.....++|||+|||+++|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+||.+++..|.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 82 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCV------VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGR 82 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCE
Confidence 345678999999999999999999999999876543 22222346678999999999999999997799999999
Q ss_pred eeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeec
Q 009052 321 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 400 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 400 (545)
.|.|.++........ .......++|||+|||..+++++|+++|+.||.|..|.|+.+
T Consensus 83 ~l~v~~~~~~~~~~~-----------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 139 (196)
T 1l3k_A 83 VVEPKRAVSREDSQR-----------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139 (196)
T ss_dssp ECEEEECCC----------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred EeeeecccCcccccc-----------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeec
Confidence 999998764432110 011123368999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCC
Q 009052 401 RETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 447 (545)
Q Consensus 401 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 447 (545)
+.+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.|+.++..
T Consensus 140 ~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 140 RGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC----
T ss_pred CCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhH
Confidence 88999999999999999999999976 89999999999999966653
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.7e-31 Score=237.41 Aligned_cols=163 Identities=22% Similarity=0.358 Sum_probs=141.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeE
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 323 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~ 323 (545)
.++|||+|||+.+|+++|+++|+.||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .|+|..+.|+.|.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~------~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 75 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK------LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 75 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEE------EEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEE
Confidence 57999999999999999999999999865543 2222225566799999999999999999 7999999999999
Q ss_pred EeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCC
Q 009052 324 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 403 (545)
Q Consensus 324 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~ 403 (545)
|.++...... ....+|+|+|||..+++++|+++|++||.|..+.++.++.+
T Consensus 76 v~~~~~~~~~-----------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~ 126 (167)
T 1fxl_A 76 VSYARPSSAS-----------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT 126 (167)
T ss_dssp EEECCCCCGG-----------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT
T ss_pred EEecCCCccc-----------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCC
Confidence 9886533211 12358999999999999999999999999999999999889
Q ss_pred CCcceEEEEEecChHHHHHHHHHhCCCccCCeE--EEEEEc
Q 009052 404 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKT--LTVRRA 442 (545)
Q Consensus 404 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~--l~v~~a 442 (545)
|.++|||||+|.+.++|.+|+..|||..|.|+. |.|.||
T Consensus 127 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 127 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999999999999999999965 888886
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=4.7e-32 Score=251.88 Aligned_cols=186 Identities=25% Similarity=0.387 Sum_probs=151.7
Q ss_pred hhhhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009052 238 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII 316 (545)
Q Consensus 238 ~~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~ 316 (545)
........++|||+|||+++|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|++..
T Consensus 21 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 94 (216)
T 2qfj_A 21 RQGALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSID------MSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM 94 (216)
T ss_dssp HHHHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------ECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC
T ss_pred cCcccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEE------EeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe
Confidence 344566789999999999999999999999999875543 2223335678999999999999999999 699999
Q ss_pred ecCceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEE
Q 009052 317 FEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFD 396 (545)
Q Consensus 317 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~ 396 (545)
|.|+.|.|.++.......... .. ........++|||+|||..+++++|+++|++||.|..|.
T Consensus 95 ~~g~~l~v~~~~~~~~~~~~~----------~~--------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~ 156 (216)
T 2qfj_A 95 LGGRNIKVGRPSNIGQAQPII----------DQ--------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSAT 156 (216)
T ss_dssp CC-CCCEEECCSCCGGGHHHH----------HH--------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEE
T ss_pred eCCeeEEEecCCCccccchhh----------hh--------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEE
Confidence 999999998876443211000 00 000012235899999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCC
Q 009052 397 LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 447 (545)
Q Consensus 397 i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 447 (545)
|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.....
T Consensus 157 i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 157 LARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred EEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 999988999999999999999999999999999999999999999977643
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=7.1e-31 Score=235.33 Aligned_cols=165 Identities=19% Similarity=0.388 Sum_probs=146.3
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
..+.++|||+|||+++|+++|+++|..||.+.++ .+.+..++.++|||||+|.+.++|.+|++|+|..|.|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-------~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 82 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNE 82 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-------EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeE
Confidence 4567899999999999999999999999999873 477888999999999999999999999999999999999
Q ss_pred eEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecC
Q 009052 322 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR 401 (545)
Q Consensus 322 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~ 401 (545)
|.|.++...... ......+|||+|||..+++++|+++|+.||.|..+ .
T Consensus 83 l~v~~~~~~~~~---------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~ 130 (175)
T 1fje_B 83 IKLEKPKGRDSK---------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----S 130 (175)
T ss_dssp EEEECCCCSSCS---------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----C
T ss_pred EEEecCCCcccc---------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----c
Confidence 999987653211 01123589999999999999999999999987665 3
Q ss_pred CCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 402 ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 402 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
.++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.++
T Consensus 131 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 131 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 57889999999999999999999999999999999999999654
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.1e-31 Score=238.74 Aligned_cols=165 Identities=19% Similarity=0.426 Sum_probs=141.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCceeE
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 323 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l~ 323 (545)
+.++|||+|||+++|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+. ++..|.|+.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLK------IMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVID 74 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEE------CCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcc
Confidence 578999999999999999999999999865543 22222356788999999999999999996 36789999999
Q ss_pred EeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCC
Q 009052 324 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET 403 (545)
Q Consensus 324 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~ 403 (545)
|.++...... ....+|||+|||..+++++|+++|++||.|..|.|+.++.+
T Consensus 75 v~~~~~~~~~-----------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~ 125 (167)
T 2cjk_A 75 PKRAIPRDEQ-----------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT 125 (167)
T ss_dssp CEECCCHHHH-----------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSS
T ss_pred cccccchhhc-----------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCC
Confidence 9875432110 11248999999999999999999999999999999999889
Q ss_pred CCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 404 GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 404 g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
|.++|||||+|.+.++|.+|++ |+|..|+|+.|.|.|+.++
T Consensus 126 g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 126 GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp STTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999999999999999997 8999999999999999654
No 13
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=3.3e-30 Score=231.00 Aligned_cols=165 Identities=22% Similarity=0.353 Sum_probs=138.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEec--CCCcEEEEEecCHHHHHHHH-HcCCceec--
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYIN--HEKKFAFVEMRSVEEASNAM-ALDGIIFE-- 318 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~a~-~l~g~~~~-- 318 (545)
..++|||+|||+++|+++|+++|++||.|..+. ++.+...+ .++|||||+|.+.++|.+|+ .|++..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 75 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEIN------VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG 75 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC
Confidence 467999999999999999999999999876654 22222233 67899999999999999999 89998775
Q ss_pred -CceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEE
Q 009052 319 -GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDL 397 (545)
Q Consensus 319 -g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i 397 (545)
++.+.+.++...... .....+|||+|||..+++++|+++|++||.|..|.+
T Consensus 76 ~~~~~~~~~~~~~~~~----------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 76 MHHPIQMKPADSEKNN----------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp CSSCCEEEECGGGCCS----------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CccceEEccccccccc----------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 567777654322110 112358999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEecChHHHHHHHHHhCCCccC---CeEEEEEEcC
Q 009052 398 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG---DKTLTVRRAN 443 (545)
Q Consensus 398 ~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~---g~~l~v~~a~ 443 (545)
+.++ +|.++|||||+|.+.++|.+|+..|||..+. |+.|.|.||.
T Consensus 128 ~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 128 LRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9985 6899999999999999999999999998775 4999999983
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=6.1e-29 Score=226.93 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=137.4
Q ss_pred ccceEEEcCCC-CCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecC-CCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 244 HARRVYVGGLP-PTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 244 ~~~~l~V~nLp-~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
+.++|||+||| ..+|+++|+++|+.||.| ..+.+.. .+|||||+|.+.++|..|+ .|||..|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v------------~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNV------------EKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCE------------EEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCe------------EEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 46799999999 799999999999999964 4444433 5899999999999999999 8999999999
Q ss_pred eeEEeCCCCCCCCccccCCCCCCCCC-cccccc---cCC----CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCc
Q 009052 321 PVKVRRPSDYNPSLAATLGPSQPNPN-LNLAAV---GLT----PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 392 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~----~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 392 (545)
+|.|.+++................+. ...... ... ........+..+|||+|||..+++++|+++|++||.|
T Consensus 71 ~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 99999876433211000000000000 000000 000 0001112345689999999999999999999999999
Q ss_pred --cEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCe----EEEEEEc
Q 009052 393 --RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK----TLTVRRA 442 (545)
Q Consensus 393 --~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~----~l~v~~a 442 (545)
..|.++.+. +..+|+|||+|.+.++|.+||..|||..|.|. ++.|.||
T Consensus 151 ~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 151 RPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred ceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 899988773 55679999999999999999999999999887 5666665
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=4.5e-28 Score=226.51 Aligned_cols=186 Identities=20% Similarity=0.237 Sum_probs=141.4
Q ss_pred ccccceEEEcCCCC-CCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCC-CcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 242 TRHARRVYVGGLPP-TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE-KKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 242 ~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~-~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
..+.++|||+|||+ .+|+++|+++|+.||. |..+.+... +|||||+|.+.++|.+|+ .|+|..|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~------------i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGD------------VQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTC------------EEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCC------------eEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 34678999999999 9999999999999996 445554444 699999999999999999 79999999
Q ss_pred CceeEEeCCCCCCCCccccCCCCCCCC------CcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-C
Q 009052 319 GAPVKVRRPSDYNPSLAATLGPSQPNP------NLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFG-P 391 (545)
Q Consensus 319 g~~l~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~ 391 (545)
|+.|.|.++.................. ..................+.++|||+|||..+++++|+++|+.|| .
T Consensus 99 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~ 178 (229)
T 2adc_A 99 GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV 178 (229)
T ss_dssp SSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCC
T ss_pred CeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCC
Confidence 999999988654321111000000000 000000000000011223457899999999999999999999999 9
Q ss_pred ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccC-CeEEEEEEcCC
Q 009052 392 LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG-DKTLTVRRANQ 444 (545)
Q Consensus 392 i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~-g~~l~v~~a~~ 444 (545)
|..|.|+.. .+|||||+|.+.++|.+|+..|||..|+ |+.|.|.|+.+
T Consensus 179 i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 179 VKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred eeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 999999654 2789999999999999999999999999 99999999964
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=3.5e-28 Score=235.28 Aligned_cols=188 Identities=22% Similarity=0.339 Sum_probs=142.5
Q ss_pred hccccceEEEcCCCCCCCHHHHH----HHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCc
Q 009052 241 ATRHARRVYVGGLPPTANEQSVA----TFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGI 315 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~ 315 (545)
...+.++|||+|||+++|+++|+ ++|+.||.|..+. -..++.++|||||+|.+.++|.+|+ .|||.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~---------~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIL---------VSRSLKMRGQAFVIFKEVSSATNALRSMQGF 75 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEE---------EcCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 34578999999999999999966 8999999865432 2236778999999999999999999 99999
Q ss_pred eecCceeEEeCCCCCCCCccccCCCCC-----------------------------------------------------
Q 009052 316 IFEGAPVKVRRPSDYNPSLAATLGPSQ----------------------------------------------------- 342 (545)
Q Consensus 316 ~~~g~~l~v~~~~~~~~~~~~~~~~~~----------------------------------------------------- 342 (545)
.|.|+.|.|.++...........+...
T Consensus 76 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (282)
T 3pgw_A 76 PFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMH 155 (282)
T ss_pred eeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccc
Confidence 999999999987654321000000000
Q ss_pred ---------CCCCcccccccCCC---------------------CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCc
Q 009052 343 ---------PNPNLNLAAVGLTP---------------------GSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPL 392 (545)
Q Consensus 343 ---------~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 392 (545)
+.+.. ....+... .........++|||+|||..+++++|+++|+.||.|
T Consensus 156 ~~~g~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i 234 (282)
T 3pgw_A 156 HMPGQPPYMPPPGM-IPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGF 234 (282)
T ss_pred cCCCCCCCCCCCCC-CCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCe
Confidence 00000 00000000 000122245689999999999999999999999999
Q ss_pred cEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccC-CeEEEEEEcC
Q 009052 393 RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG-DKTLTVRRAN 443 (545)
Q Consensus 393 ~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~-g~~l~v~~a~ 443 (545)
..|.|+.+. +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 235 ~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 235 KEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999998763 689999999999999999999999999 9999999984
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.1e-28 Score=238.08 Aligned_cols=172 Identities=17% Similarity=0.364 Sum_probs=140.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHH-HhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVM-AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
..++|||+|||+.+|+++|+++|..|| .|..+. +.....+.++|||||+|.+.++|.+|+ .|+|..|.|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~-------i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 188 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIR-------LPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYT 188 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEE-------CC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEE-------EEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 578999999999999999999999999 876654 222233678999999999999999999 69999999999
Q ss_pred eEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCccEEEEeec
Q 009052 322 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYY-FTEAQIRELLESFGPLRGFDLVKD 400 (545)
Q Consensus 322 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~i~~~ 400 (545)
|.|.++......... ........+|||+|||.. +++++|+++|+.||.|..|.|+.+
T Consensus 189 l~v~~a~~~~~~~~~----------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~ 246 (292)
T 2ghp_A 189 LVTKVSNPLEKSKRT----------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG 246 (292)
T ss_dssp CEEEECCCC-------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC
T ss_pred EEEEECCCCcccccc----------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEec
Confidence 999987643321100 011233468999999999 999999999999999999999998
Q ss_pred CC-CCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 401 RE-TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 401 ~~-~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
.. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.|+.++
T Consensus 247 ~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 247 QKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 65 5999999999999999999999 99999999999999999654
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.2e-28 Score=238.79 Aligned_cols=170 Identities=19% Similarity=0.212 Sum_probs=146.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
..++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|+|..|.|+.|
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCF------LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEE------EEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 457999999999999999999999999876543 2222335667899999999999999999 999999999999
Q ss_pred EEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCC-CHHHHHHHHHhcCCccEEEEeecC
Q 009052 323 KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYF-TEAQIRELLESFGPLRGFDLVKDR 401 (545)
Q Consensus 323 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-~~~~l~~~f~~~G~i~~v~i~~~~ 401 (545)
.|.++...... .......+|||+|||..+ ++++|+++|+.||.|..|.|+.++
T Consensus 168 ~v~~a~~~~~~--------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~ 221 (284)
T 3smz_A 168 YVHWTDAGQLT--------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ 221 (284)
T ss_dssp EEEECCGGGCC--------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS
T ss_pred EEEECCCCCCC--------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC
Confidence 99987532210 011234689999999995 999999999999999999999985
Q ss_pred CCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCC
Q 009052 402 ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA 446 (545)
Q Consensus 402 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 446 (545)
+|.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.++.
T Consensus 222 -~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 222 -DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp -SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred -CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 89999999999999999999999999999999999999996554
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=4e-28 Score=231.48 Aligned_cols=157 Identities=22% Similarity=0.378 Sum_probs=141.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
....++|||+|||+++|+++|+++|+.||. |..+.+..++|||||+|.+.++|..|+ .|+|..|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~ 86 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGE------------PSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSR 86 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCc
Confidence 356789999999999999999999999996 445566788999999999999999999 7999999999
Q ss_pred eeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeec
Q 009052 321 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD 400 (545)
Q Consensus 321 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 400 (545)
.|.|.++.. ..+|||+|||..+++++|+++|+.||.|..|.|+.+
T Consensus 87 ~l~v~~a~~-----------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 131 (261)
T 3sde_A 87 PLRIRFATH-----------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD 131 (261)
T ss_dssp ECEEEECCC-----------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred eeEeeeccc-----------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC
Confidence 999988542 248999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEecChHHHHHHHHHhC-CCccC---CeEEEEEEcCCCC
Q 009052 401 RETGNSKGYAFCVYQDLSVTDIACAALN-GIKMG---DKTLTVRRANQGA 446 (545)
Q Consensus 401 ~~~g~~~g~afV~f~~~e~A~~A~~~l~-g~~~~---g~~l~v~~a~~~~ 446 (545)
.+|.++|||||+|.+.++|.+|+..|| |..+. ++.|.|.++....
T Consensus 132 -~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 132 -DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp -TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred -CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 589999999999999999999999995 55554 9999999986553
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=6.1e-28 Score=220.74 Aligned_cols=184 Identities=20% Similarity=0.233 Sum_probs=139.3
Q ss_pred cceEEEcCCCC-CCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCC-CcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 245 ARRVYVGGLPP-TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE-KKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 245 ~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~-~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.++|||+|||+ .+|+++|+++|+.||.|.. +.+... +|||||+|.+.++|.+|+ .|+|..|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~------------v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQR------------VKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSE------------EECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEE------------EEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 57999999999 9999999999999997543 333333 799999999999999999 79999999999
Q ss_pred eEEeCCCCCCCCccccCCCCCCCC------CcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-CccE
Q 009052 322 VKVRRPSDYNPSLAATLGPSQPNP------NLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFG-PLRG 394 (545)
Q Consensus 322 l~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~ 394 (545)
|.|.++.................. ..................+.++|||+|||..+++++|+++|+.|| .|..
T Consensus 71 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~ 150 (198)
T 1qm9_A 71 IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG 150 (198)
T ss_dssp CEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE
T ss_pred EEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE
Confidence 999987654321111000000000 000000000001112233467899999999999999999999999 9999
Q ss_pred EEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccC-CeEEEEEEcCCC
Q 009052 395 FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG-DKTLTVRRANQG 445 (545)
Q Consensus 395 v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~-g~~l~v~~a~~~ 445 (545)
|.|+.+. +|+|||+|.+.++|.+|+..|||..|+ |+.|.|.|+.+.
T Consensus 151 v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 151 FKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9997642 789999999999999999999999999 999999998543
No 21
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.90 E-value=1.3e-23 Score=193.96 Aligned_cols=143 Identities=14% Similarity=0.160 Sum_probs=120.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
+.++|||+|||..+++++|+++|++||.|++|.|++++.+|.++|||||+|.+.++|.+||..|||..+.|+.|.|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 34689999999999999999999999999999999998899999999999999999999999999999999999999984
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-----
Q 009052 444 QGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT----- 518 (545)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v----- 518 (545)
.... .. ......|+|.|+ +..+++ ++|+++|++||.|+.|
T Consensus 94 ~~~~-----~~--------------------~~~~~~l~v~nl--~~~~t~--------~~l~~~F~~~G~i~~~~i~~d 138 (213)
T 4f02_A 94 RDPS-----LR--------------------KSGVGNIFIKNL--DKSIDN--------KALYDTFSAFGNILSCKVVCD 138 (213)
T ss_dssp CCTH-----HH--------------------HHCTTEEEEESC--CTTCCH--------HHHHHHHGGGSCEEEEEEEEE
T ss_pred cccc-----cc--------------------ccccccceECCc--ccccHH--------HHHHHHHhhcCCeEEEEeecc
Confidence 4321 00 012346788888 444443 3899999999999998
Q ss_pred --cCCceEEEEeCCCCCcCcccccc
Q 009052 519 --FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 519 --~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
..+|+|||+|.+.++|.+|+..+
T Consensus 139 ~~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 139 ENGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHh
Confidence 35899999999999997776443
No 22
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.90 E-value=1.5e-23 Score=186.07 Aligned_cols=140 Identities=23% Similarity=0.344 Sum_probs=121.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999965
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee------
Q 009052 445 GANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------ 518 (545)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v------ 518 (545)
... ..+..++++.|+ +..+++ ++|+++|++||.|..+
T Consensus 83 ~~~---------------------------~~~~~~l~v~nl--~~~~t~--------~~l~~~f~~~G~i~~~~i~~~~ 125 (168)
T 1b7f_A 83 GGE---------------------------SIKDTNLYVTNL--PRTITD--------DQLDTIFGKYGSIVQKNILRDK 125 (168)
T ss_dssp CSS---------------------------TTTTCEEEEESC--CTTCCH--------HHHHHHHTSSSCEEEEEEEECT
T ss_pred Ccc---------------------------cCCCCCEEEeCC--CCCCCH--------HHHHHhhhcCCcEEEEEEEEcC
Confidence 432 234567888888 444443 4899999999999988
Q ss_pred ---cCCceEEEEeCCCCCcCcccccc
Q 009052 519 ---FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 519 ---~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
...|+|||+|.+.++|.+|+..+
T Consensus 126 ~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 126 LTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHh
Confidence 23589999999999997776544
No 23
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.90 E-value=2.4e-23 Score=184.63 Aligned_cols=140 Identities=21% Similarity=0.335 Sum_probs=120.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.+.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999644
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-------
Q 009052 446 ANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------- 518 (545)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v------- 518 (545)
.. ..+...+++.|+ +..+++ ++|+++|++||.|..+
T Consensus 83 ~~---------------------------~~~~~~l~v~nl--~~~~t~--------~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 83 SA---------------------------SIRDANLYVSGL--PKTMTQ--------KELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp CG---------------------------GGTTCEEEEESC--CTTCCH--------HHHHHHHGGGSCEEEEEEEECTT
T ss_pred cc---------------------------cCCCCcEEECCC--CCcCCH--------HHHHHHHHhcCCEeEEEEEecCC
Confidence 31 123456888888 334433 4899999999999988
Q ss_pred --cCCceEEEEeCCCCCcCccccccc
Q 009052 519 --FCYKESGLIYTDRRLHNPQFVYFY 542 (545)
Q Consensus 519 --~~~g~afV~F~~~e~A~a~~~~~~ 542 (545)
...|+|||+|.+.++|.+|+..+.
T Consensus 126 ~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 126 TGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhc
Confidence 237999999999999977765443
No 24
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.89 E-value=2.9e-23 Score=189.26 Aligned_cols=144 Identities=17% Similarity=0.308 Sum_probs=118.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. +|..|.|+.|.|.++.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeeccc
Confidence 346899999999999999999999999999999999988999999999999999999999965 9999999999999986
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-----
Q 009052 444 QGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT----- 518 (545)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v----- 518 (545)
....... .....+..+|+|.|+ +..+++ ++|+++|++||.|..|
T Consensus 91 ~~~~~~~---------------------~~~~~~~~~l~V~nL--p~~~t~--------~~l~~~F~~~G~i~~v~i~~~ 139 (196)
T 1l3k_A 91 SREDSQR---------------------PGAHLTVKKIFVGGI--KEDTEE--------HHLRDYFEQYGKIEVIEIMTD 139 (196)
T ss_dssp C--------------------------------CCSEEEEECC--TTTCCH--------HHHHHHHTTTSCEEEEEEEEC
T ss_pred Ccccccc---------------------cccCCCcceEEEeCC--CCCCCH--------HHHHHHHhcCCCeEEEEEeec
Confidence 5432211 112345678889988 444443 3899999999999998
Q ss_pred ----cCCceEEEEeCCCCCcCcccc
Q 009052 519 ----FCYKESGLIYTDRRLHNPQFV 539 (545)
Q Consensus 519 ----~~~g~afV~F~~~e~A~a~~~ 539 (545)
...|+|||+|.+.++|.+|+.
T Consensus 140 ~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 140 RGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCccceEEEEECCHHHHHHHHH
Confidence 247899999999999977663
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.1e-23 Score=180.63 Aligned_cols=140 Identities=18% Similarity=0.257 Sum_probs=120.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 379999999999999999999999999999999985 5778999999999999999999999999999999999999655
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-------
Q 009052 446 ANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------- 518 (545)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v------- 518 (545)
... ...+...+++.|+ +..+++ ++|+++|++||.|..+
T Consensus 80 ~~~-------------------------~~~~~~~l~v~nl--~~~~t~--------~~l~~~f~~~G~i~~~~i~~~~~ 124 (166)
T 3md3_A 80 QQS-------------------------SSDDTFNLFVGDL--NVNVDD--------ETLRNAFKDFPSYLSGHVMWDMQ 124 (166)
T ss_dssp CCC-------------------------CCTTCEEEEEESC--CTTCCH--------HHHHHHHTTSTTEEEEEEEECTT
T ss_pred CCC-------------------------CCCCCceEEECCC--CCCCCH--------HHHHHHHhccCCeeEEEEEecCC
Confidence 421 2346778999988 444443 3899999999999999
Q ss_pred --cCCceEEEEeCCCCCcCcccccc
Q 009052 519 --FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 519 --~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
.+.|+|||+|.+.++|.+|+..+
T Consensus 125 ~~~~~g~afV~f~~~~~A~~A~~~l 149 (166)
T 3md3_A 125 TGSSRGYGFVSFTSQDDAQNAMDSM 149 (166)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHh
Confidence 34789999999999998777543
No 26
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.88 E-value=1.6e-22 Score=187.36 Aligned_cols=150 Identities=21% Similarity=0.362 Sum_probs=119.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++...
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 108 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 108 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999987543
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-------
Q 009052 446 ANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------- 518 (545)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v------- 518 (545)
.. ...... .... ...+..+|+|.|+ +..+++ ++|+++|++||.|+.|
T Consensus 109 ~~-----~~~~~~----~~~~-------~~~~~~~l~v~nl--p~~~t~--------~~l~~~f~~~G~v~~v~i~~~~~ 162 (216)
T 2qfj_A 109 GQ-----AQPIID----QLAE-------EARAFNRIYVASV--HQDLSD--------DDIKSVFEAFGKIKSATLARDPT 162 (216)
T ss_dssp GG-----GHHHHH----HHHH-------HHTTSCEEEEECC--CTTCCH--------HHHHHHHTTSSCEEEEEEEECTT
T ss_pred cc-----cchhhh----hhhc-------ccCCCcEEEEeCC--CCcCCH--------HHHHHHHhccCCeeEEEEEecCC
Confidence 21 111100 0000 1235678889888 444433 4999999999999999
Q ss_pred --cCCceEEEEeCCCCCcCcccccc
Q 009052 519 --FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 519 --~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
...|+|||+|.+.++|.+|+..+
T Consensus 163 ~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 163 TGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCcCceEEEEecCHHHHHHHHHHc
Confidence 23789999999999997776544
No 27
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.87 E-value=7.8e-23 Score=186.44 Aligned_cols=163 Identities=14% Similarity=0.126 Sum_probs=118.2
Q ss_pred CCeEEEcCCC-CCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 365 PDRIFVGGLP-YYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 365 ~~~l~v~nlp-~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
.++|||+||| ..+++++|+++|+.||.|..|.|+.+. +|||||+|.+.++|.+||+.|||..|.|+.|.|.|+.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 3589999999 899999999999999999999998763 7999999999999999999999999999999999997
Q ss_pred CCCCCCChh---hHHHH------HHHHHHH-HHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccC
Q 009052 444 QGANQPKPE---QESVL------LHAQQQI-ALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA 513 (545)
Q Consensus 444 ~~~~~~~~~---~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG 513 (545)
.....+... ..... ....... ............++.+|+|.|+ +.++++ ++|+++|++||
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NL--p~~~t~--------~~L~~~F~~~G 148 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNA--PLEVTE--------ENFFEICDELG 148 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEE--CTTCCH--------HHHHHHHHHHT
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCC--CCCCCH--------HHHHHHHHhcC
Confidence 554322110 00000 0000000 0000000112345678888888 444443 39999999999
Q ss_pred Cc--eee-------cCCceEEEEeCCCCCcCccccccc
Q 009052 514 FC--SPT-------FCYKESGLIYTDRRLHNPQFVYFY 542 (545)
Q Consensus 514 ~V--~~v-------~~~g~afV~F~~~e~A~a~~~~~~ 542 (545)
.| ..+ ...|+|||+|.+.++|.+|+..+.
T Consensus 149 ~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~ln 186 (205)
T 3tyt_A 149 VKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLN 186 (205)
T ss_dssp CCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHT
T ss_pred CcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhC
Confidence 99 666 225899999999999988776543
No 28
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.87 E-value=3.8e-22 Score=178.28 Aligned_cols=139 Identities=20% Similarity=0.364 Sum_probs=117.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCC--CcceEEEEEecChHHHHHHHHHhCCCccC---CeEEEEE
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETG--NSKGYAFCVYQDLSVTDIACAALNGIKMG---DKTLTVR 440 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g--~~~g~afV~f~~~e~A~~A~~~l~g~~~~---g~~l~v~ 440 (545)
++|||+|||..+++++|+++|++||.|..|.|+.++.++ .++|||||+|.+.++|.+|+..|+|..+. ++.|.+.
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~ 83 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 83 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEc
Confidence 589999999999999999999999999999999997776 88999999999999999999999998875 6888888
Q ss_pred EcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee--
Q 009052 441 RANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-- 518 (545)
Q Consensus 441 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v-- 518 (545)
++..... ...+...|+|.|+ +..+++ ++|+++|++||.|..+
T Consensus 84 ~~~~~~~--------------------------~~~~~~~l~v~nl--~~~~t~--------~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 84 PADSEKN--------------------------NAVEDRKLFIGMI--SKKCTE--------NDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp ECGGGCC--------------------------SCGGGSEEEEESC--CTTCCH--------HHHHHHHGGGSCEEEEEE
T ss_pred ccccccc--------------------------ccCCCCeEEEcCC--CCcCCH--------HHHHHHHHhCCCEEEEEE
Confidence 8743322 1235667899888 444443 3899999999999998
Q ss_pred ------cCCceEEEEeCCCCCcCccccc
Q 009052 519 ------FCYKESGLIYTDRRLHNPQFVY 540 (545)
Q Consensus 519 ------~~~g~afV~F~~~e~A~a~~~~ 540 (545)
...|+|||+|.+.++|.+|+..
T Consensus 128 ~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 128 LRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 3478999999999999777643
No 29
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=1.4e-21 Score=171.38 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=106.7
Q ss_pred CCCcEEEEEecCHHHHHHHH-HcCCceecCceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEE
Q 009052 291 HEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIF 369 (545)
Q Consensus 291 ~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 369 (545)
.++|||||+|.+.++|++|+ .+++....+..+.+............ ..............+||
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~ 74 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG----------------SHHHHHHMDVEGMTSLK 74 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC----------------CCCSSCCCCCCBCCEEE
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc----------------ccccccccCCCCCCEEE
Confidence 57899999999999999999 76654332222322211110000000 00000111123346899
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCC
Q 009052 370 VGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 447 (545)
Q Consensus 370 v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 447 (545)
|+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+.....
T Consensus 75 v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 75 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp EESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 999999999999999999999999999999988999999999999999999999999999999999999999976643
No 30
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.86 E-value=2.4e-21 Score=187.11 Aligned_cols=80 Identities=16% Similarity=0.385 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIR----ELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 439 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v 439 (545)
+.++|||+|||..+++++|+ ++|+.||.|..|.|+. +|.++|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 35689999999999999966 8999999999999876 6788999999999999999999999999999999999
Q ss_pred EEcCCCC
Q 009052 440 RRANQGA 446 (545)
Q Consensus 440 ~~a~~~~ 446 (545)
.|+....
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9996554
No 31
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.86 E-value=2.1e-22 Score=178.49 Aligned_cols=135 Identities=17% Similarity=0.296 Sum_probs=113.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+.. +..|.|+.|.|.++...
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccch
Confidence 5899999999999999999999999999999999988999999999999999999999974 67899999999998432
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-------
Q 009052 446 ANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT------- 518 (545)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v------- 518 (545)
. . ..+...|++.|+ +..+++ ++|+++|++||.|..+
T Consensus 82 ~-----~----------------------~~~~~~l~V~nl--p~~~t~--------~~l~~~F~~~G~i~~~~i~~~~~ 124 (167)
T 2cjk_A 82 D-----E----------------------QDKTGKIFVGGI--GPDVRP--------KEFEEFFSQWGTIIDAQLMLDKD 124 (167)
T ss_dssp H-----H----------------------HHHCEEEEEEEE--CTTCCH--------HHHHHHHHTTSCCSEEECCCSSS
T ss_pred h-----h----------------------ccCCCeEEECCC--CCCCCH--------HHHHHHHHhCccEEEEEEEEcCC
Confidence 1 0 012456777777 333333 3899999999999998
Q ss_pred --cCCceEEEEeCCCCCcCcccc
Q 009052 519 --FCYKESGLIYTDRRLHNPQFV 539 (545)
Q Consensus 519 --~~~g~afV~F~~~e~A~a~~~ 539 (545)
...|+|||+|.+.++|.+|+.
T Consensus 125 ~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 125 TGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp SSTTSEEEEEEESSHHHHHHHHH
T ss_pred CCccceEEEEEECCHHHHHHHHh
Confidence 346899999999999977654
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.85 E-value=9e-22 Score=175.89 Aligned_cols=142 Identities=9% Similarity=0.137 Sum_probs=117.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.||.|..+ ++.+..+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 344689999999999999999999999988773 3334357888999999999999999999 59999999999999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee----
Q 009052 443 NQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT---- 518 (545)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v---- 518 (545)
...... ...+..+|+|.|+ +..+++ ++|+++|++||.|..+
T Consensus 89 ~~~~~~-------------------------~~~~~~~l~v~nl--p~~~t~--------~~l~~~F~~~g~v~~~~~~~ 133 (175)
T 1fje_B 89 KGRDSK-------------------------KVRAARTLLAKNL--SFNITE--------DELKEVFEDALEIRLVSQDG 133 (175)
T ss_dssp CCSSCS-------------------------TTGGGGEEEEESC--CSSCCH--------HHHHHHCTTCSEEEEECSSS
T ss_pred CCcccc-------------------------ccccCCEEEEeCC--CCCCCH--------HHHHHHHHhcCeEEEecCCC
Confidence 655321 1235678999988 444443 3899999999999988
Q ss_pred cCCceEEEEeCCCCCcCcccccc
Q 009052 519 FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 519 ~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
...|+|||+|.+.++|.+|+..+
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEK 156 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCHHHHHHHHHHh
Confidence 67899999999999997776543
No 33
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.84 E-value=7.8e-21 Score=177.29 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=120.4
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 363 EGPDRIFVGGLPY-YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 363 ~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
.+.++|||+|||. .+++++|+++|+.||.|..|.|+.++ +|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456899999999 99999999999999999999999874 78999999999999999999999999999999999
Q ss_pred cCCCCCCCChhhHH--HHHHHHHHHH------HHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccC
Q 009052 442 ANQGANQPKPEQES--VLLHAQQQIA------LQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA 513 (545)
Q Consensus 442 a~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG 513 (545)
+............. .......... ...........+..+|+|.|+ +..+++ ++|+++|++||
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl--p~~~t~--------~~l~~~f~~~G 176 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI--PPSVSE--------EDLKVLFSSNG 176 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECC--CTTCCH--------HHHHHHHHTTS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCC--CccCCH--------HHHHHHHHHcC
Confidence 97653221110000 0000000000 000000112345788999988 444433 48999999999
Q ss_pred -Cceee----cCCceEEEEeCCCCCcCccccc
Q 009052 514 -FCSPT----FCYKESGLIYTDRRLHNPQFVY 540 (545)
Q Consensus 514 -~V~~v----~~~g~afV~F~~~e~A~a~~~~ 540 (545)
.|..| ...|+|||+|.+.++|.+|+..
T Consensus 177 ~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~ 208 (229)
T 2adc_A 177 GVVKGFKFFQKDRKMALIQMGSVEEAVQALID 208 (229)
T ss_dssp CCEEEEEECSSSTTCEEEEESSHHHHHHHHHH
T ss_pred CCeeEEEEEECCCcEEEEEECCHHHHHHHHHH
Confidence 99988 3789999999999999777653
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.84 E-value=8e-21 Score=180.87 Aligned_cols=129 Identities=19% Similarity=0.322 Sum_probs=112.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|+.||.|..|.|.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 3468999999999999999999999999999999765 7999999999999999999999999999999999984
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-----
Q 009052 444 QGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT----- 518 (545)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v----- 518 (545)
. ..+|+|.|+ +..+++ ++|+++|++||.|..|
T Consensus 95 ~---------------------------------~~~l~v~nl--~~~~t~--------~~l~~~F~~~G~i~~v~i~~~ 131 (261)
T 3sde_A 95 H---------------------------------GAALTVKNL--SPVVSN--------ELLEQAFSQFGPVEKAVVVVD 131 (261)
T ss_dssp C---------------------------------SSEEEEESC--CTTCCH--------HHHHHHHGGGSCEEEEEEEEE
T ss_pred c---------------------------------CCcccccCC--CCCCCH--------HHHHHHHHhcCCeEEEEeeeC
Confidence 2 346888888 343333 3899999999999998
Q ss_pred ---cCCceEEEEeCCCCCcCcccccc
Q 009052 519 ---FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 519 ---~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
...|+|||+|.+.++|.+|+..+
T Consensus 132 ~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 132 DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 35899999999999997776543
No 35
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.84 E-value=1.1e-20 Score=168.27 Aligned_cols=133 Identities=19% Similarity=0.346 Sum_probs=109.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc----C-------CccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESF----G-------PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG 433 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~ 433 (545)
.++|||+|||..+++++|+++|++| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..|.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 3589999999999999999999999 6 5666666443 899999999999999999 99999999
Q ss_pred CeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccC
Q 009052 434 DKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA 513 (545)
Q Consensus 434 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG 513 (545)
|+.|.|.++...... .....+++.|+ +..+++ ++|+++|++||
T Consensus 77 g~~i~v~~~~~~~~~---------------------------~~~~~l~v~nl--p~~~t~--------~~l~~~f~~~G 119 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPL---------------------------PGAHKLFIGGL--PNYLND--------DQVKELLTSFG 119 (172)
T ss_dssp TEECEEECCSSCCCC---------------------------TTTTCEEEECC--CTTCCH--------HHHHHHHHTTS
T ss_pred CceeeecCCcccCCC---------------------------CCCCEEEEEcC--CCcCCH--------HHHHHHHHhcC
Confidence 999999997544321 22567888888 334433 48999999999
Q ss_pred Cceee---------cCCceEEEEeCCCCCcCcccccc
Q 009052 514 FCSPT---------FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 514 ~V~~v---------~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
.|..+ ...|+|||+|.+.++|.+|+..+
T Consensus 120 ~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 120 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 99998 23789999999999997776543
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=172.17 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=119.0
Q ss_pred CeEEEcCCCC-CCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 366 DRIFVGGLPY-YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 366 ~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
++|||+|||. .+++++|+++|+.||.|..|.|+.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+..
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 5899999999 99999999999999999999998874 78999999999999999999999999999999999976
Q ss_pred CCCCCChhhHHH--HHHHHHHHHHHHh------hcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccC-Cc
Q 009052 445 GANQPKPEQESV--LLHAQQQIALQRL------MLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA-FC 515 (545)
Q Consensus 445 ~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG-~V 515 (545)
............ ............. .......+..+|+|.|+ +..+++ ++|+++|++|| .|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl--~~~~~~--------~~l~~~f~~~G~~v 148 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI--PPSVSE--------EDLKVLFSSNGGVV 148 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCC--CTTCCH--------HHHHHHHHHTTSCC
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCC--CCCCCH--------HHHHHHHHHcCCCc
Confidence 532211000000 0000000000000 00011345788999988 444433 48999999999 99
Q ss_pred eee----cCCceEEEEeCCCCCcCcccccc
Q 009052 516 SPT----FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 516 ~~v----~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
..| ...|+|||+|.+.++|.+|+..+
T Consensus 149 ~~v~i~~~~~g~afV~f~~~~~A~~A~~~l 178 (198)
T 1qm9_A 149 KGFKFFQKDRKMALIQMGSVEEAVQALIDL 178 (198)
T ss_dssp CEEEESSTTSSCEEEECSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCcEEEEEeCCHHHHHHHHHHh
Confidence 888 47899999999999997776544
No 37
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=3.3e-20 Score=160.81 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=109.4
Q ss_pred CCCcEEEEEecCHHHHHHHH-Hc-CCceecCceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeE
Q 009052 291 HEKKFAFVEMRSVEEASNAM-AL-DGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRI 368 (545)
Q Consensus 291 ~~~g~afV~F~~~~~A~~a~-~l-~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 368 (545)
.-+|+++|+|.+.++|++|+ .+ ||..+.| .|.+.++............ .............++|
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l 76 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-------------HHHHMHRDSCPLDCKV 76 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-------------CCCCSCSSSSTTSCEE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-------------ccccccccCCCCCCEE
Confidence 45899999999999999999 89 9999999 9999876532211000000 0000111223345789
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 369 FVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 369 ~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
||+|||..+++++|+++|+.||.|..|.|+.+ ++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.++
T Consensus 77 ~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 77 YVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp EEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999999999999999876 4899999999999999999999999999999999999654
No 38
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.82 E-value=1.9e-20 Score=170.78 Aligned_cols=153 Identities=16% Similarity=0.283 Sum_probs=113.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcC-----------CccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFG-----------PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG 433 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G-----------~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~ 433 (545)
.++|||+|||..+++++|+++|+.|| .|..+.+ +.++|||||+|.+.++|.+|| .|||..|.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 36899999999999999999999995 4444444 345899999999999999999 99999999
Q ss_pred CeEEEEEEcCCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccC
Q 009052 434 DKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFA 513 (545)
Q Consensus 434 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG 513 (545)
|+.|.|.++......+........ ............+..+|+|.|+ +..+++ ++|+++|++||
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~v~nl--~~~~~~--------~~l~~~f~~~G 139 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSV-------YVPGVVSTVVPDSAHKLFIGGL--PNYLND--------DQVKELLTSFG 139 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSC-------CCTTSSCCCSSCCCCEEEEECC--CTTCCH--------HHHHHHHHTBS
T ss_pred CceEEEeCCCCCCCCCCCcCCCcC-------CCCCCccCCCCCCCCEEEEeCC--CCCCCH--------HHHHHHHHHcC
Confidence 999999998765432211000000 0000011123356788999988 434433 48999999999
Q ss_pred Cceee---------cCCceEEEEeCCCCCcCcccccc
Q 009052 514 FCSPT---------FCYKESGLIYTDRRLHNPQFVYF 541 (545)
Q Consensus 514 ~V~~v---------~~~g~afV~F~~~e~A~a~~~~~ 541 (545)
.|..| ...|+|||+|.+.++|.+|+..+
T Consensus 140 ~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 176 (198)
T 2yh0_A 140 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 176 (198)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHH
T ss_pred CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 99998 23789999999999997776543
No 39
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=144.65 Aligned_cols=79 Identities=30% Similarity=0.535 Sum_probs=76.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.||.+
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 5899999999999999999999999999999999988999999999999999999999999999999999999999953
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=139.72 Aligned_cols=82 Identities=22% Similarity=0.388 Sum_probs=76.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC-CccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHh-CCCccCCeEEEEEEcC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFG-PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL-NGIKMGDKTLTVRRAN 443 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l-~g~~~~g~~l~v~~a~ 443 (545)
++|||+|||..+++++|+++|++|| .|.+|.|++++.+|.++|||||+|.+.++|.+||+.| ++..|+|+.|.|.|+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 7999999999889999999999999999999999887 5678999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 41
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=141.02 Aligned_cols=80 Identities=9% Similarity=0.127 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34689999999999999999999999999999999999899999999999999999999999999999999999999984
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=1.5e-19 Score=148.72 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=67.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeE
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 323 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~ 323 (545)
..+|||+|||+++|+++|+++|+.||.|..++ ++.+ .+.++|||||+|.+.++|.+|| .|+|..|.|+.|.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~------i~~d--~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~ 76 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCK------VVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEEE--TTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEE------Eeec--CCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 45899999999999999999999999876553 1221 2346899999999999999999 8999999999999
Q ss_pred EeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHH
Q 009052 324 VRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ 381 (545)
Q Consensus 324 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~ 381 (545)
|.++.......... ........+|||+|||+.+|++.
T Consensus 77 V~~a~~~~~~~~~~---------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 77 VGRFKSRKEREAEL---------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EEESSCCCC-------------------------------------------------
T ss_pred EEECCCcccccccc---------------------ccccCCCCceEeCCCCCCccccc
Confidence 99876433211100 00111224799999999999863
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=137.45 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCC--ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCC----ccCCeEEE
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGP--LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI----KMGDKTLT 438 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~--i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~----~~~g~~l~ 438 (545)
..+|||+|||+.+|+++|+++|++||. |..|.|++++.+|.++|||||+|.+.++|.+|++.|||. .|+|+.|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 458999999999999999999999995 789999999999999999999999999999999999997 48999999
Q ss_pred EEEcCC
Q 009052 439 VRRANQ 444 (545)
Q Consensus 439 v~~a~~ 444 (545)
|.||..
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999953
No 44
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.8e-18 Score=146.36 Aligned_cols=124 Identities=21% Similarity=0.323 Sum_probs=80.2
Q ss_pred cEEEEEecCHHHHHHHH-HcCCceecCceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcC
Q 009052 294 KFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGG 372 (545)
Q Consensus 294 g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 372 (545)
-++|++|.+...|..|| .++|....|..- +.+.. ........++|||+|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------------------------~~~~~~~~~~l~V~n 54 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------------------------PPPDVEGMTSLKVDN 54 (135)
T ss_dssp -------------------------------CCSCC-----------------------------SCSSGGGCCCEEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------------------------CCCCCCCCCEEEEeC
Confidence 36788899999999999 788766555431 11100 001112235899999
Q ss_pred CCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCC
Q 009052 373 LPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 447 (545)
Q Consensus 373 lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 447 (545)
||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.....
T Consensus 55 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 55 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999988999999999999999999999999999999999999999976654
No 45
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=6.2e-18 Score=131.82 Aligned_cols=81 Identities=28% Similarity=0.427 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+..
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 35899999999999999999999999999999999988999999999999999999999999999999999999999954
Q ss_pred C
Q 009052 445 G 445 (545)
Q Consensus 445 ~ 445 (545)
+
T Consensus 86 k 86 (87)
T 3bs9_A 86 K 86 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 46
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=9.3e-18 Score=129.51 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=76.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
.+|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 47999999999999999999999999999999999889999999999999999999999999999999999999999654
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=2e-18 Score=135.33 Aligned_cols=81 Identities=19% Similarity=0.363 Sum_probs=72.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcC--CccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFG--PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
+|||+|||..+++++|+++|+.|| .|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.+
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 799999999999999999999999 999999999988999999999999999999999999999999999999999966
Q ss_pred CCC
Q 009052 445 GAN 447 (545)
Q Consensus 445 ~~~ 447 (545)
...
T Consensus 83 ~~~ 85 (90)
T 3p5t_L 83 LEH 85 (90)
T ss_dssp ---
T ss_pred Ccc
Confidence 543
No 48
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=134.10 Aligned_cols=85 Identities=26% Similarity=0.570 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
.....
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 76654
No 49
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=133.18 Aligned_cols=84 Identities=26% Similarity=0.427 Sum_probs=79.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34689999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
....
T Consensus 87 ~~~~ 90 (99)
T 1whw_A 87 IKKE 90 (99)
T ss_dssp CCST
T ss_pred CCcc
Confidence 7654
No 50
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=135.08 Aligned_cols=85 Identities=24% Similarity=0.424 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 34579999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 76543
No 51
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=132.03 Aligned_cols=82 Identities=24% Similarity=0.485 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 34468999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred CC
Q 009052 443 NQ 444 (545)
Q Consensus 443 ~~ 444 (545)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 52
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=1.2e-17 Score=132.76 Aligned_cols=82 Identities=33% Similarity=0.605 Sum_probs=78.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999966
Q ss_pred CC
Q 009052 445 GA 446 (545)
Q Consensus 445 ~~ 446 (545)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 53
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=134.43 Aligned_cols=85 Identities=20% Similarity=0.302 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 34568999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
.....
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76654
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=132.44 Aligned_cols=84 Identities=31% Similarity=0.618 Sum_probs=79.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
++++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 34689999999999999999999999999999999998889999999999999999999999999999999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
.+..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6654
No 55
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=2.5e-17 Score=135.66 Aligned_cols=86 Identities=26% Similarity=0.409 Sum_probs=80.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 34568999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 009052 443 NQGANQ 448 (545)
Q Consensus 443 ~~~~~~ 448 (545)
..+...
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 777644
No 56
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=1e-17 Score=129.98 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34689999999999999999999999999999999998899999999999999999999999999999999999999973
No 57
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=133.14 Aligned_cols=84 Identities=21% Similarity=0.413 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcc-EEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeE----E
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLR-GFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKT----L 437 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~----l 437 (545)
...++|||+|||..+++++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3457999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEEEcCCCC
Q 009052 438 TVRRANQGA 446 (545)
Q Consensus 438 ~v~~a~~~~ 446 (545)
.|.|+....
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999996553
No 58
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=134.12 Aligned_cols=85 Identities=29% Similarity=0.426 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 34568999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
.....
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76653
No 59
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=132.33 Aligned_cols=83 Identities=30% Similarity=0.515 Sum_probs=78.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEE-EEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGF-DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
.++|||+|||..+++++|+++|+.||.|..| .|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 4689999999999999999999999999999 999998899999999999999999999999999999999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
....
T Consensus 85 ~~~~ 88 (96)
T 1x5t_A 85 KKDS 88 (96)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 6654
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=2.4e-17 Score=135.78 Aligned_cols=84 Identities=23% Similarity=0.414 Sum_probs=79.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 44689999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
.+..
T Consensus 104 ~~~~ 107 (115)
T 2cpz_A 104 SKND 107 (115)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 6654
No 61
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=1.3e-17 Score=137.13 Aligned_cols=80 Identities=23% Similarity=0.431 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
..+|||+|||..+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+||..|||..|.|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3589999999999999999999999999999999984 45799999999999999999999999999999999999965
Q ss_pred CC
Q 009052 445 GA 446 (545)
Q Consensus 445 ~~ 446 (545)
..
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 62
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=132.10 Aligned_cols=84 Identities=26% Similarity=0.508 Sum_probs=78.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |||..|.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 44689999999999999999999999999999999998899999999999999999999998 99999999999999997
Q ss_pred CCCCC
Q 009052 444 QGANQ 448 (545)
Q Consensus 444 ~~~~~ 448 (545)
.+...
T Consensus 88 ~~~~~ 92 (99)
T 2dgs_A 88 PRDSK 92 (99)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76543
No 63
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=131.72 Aligned_cols=81 Identities=21% Similarity=0.425 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 34568999999999999999999999999999999999888999999999999999999999999999999999999997
Q ss_pred C
Q 009052 443 N 443 (545)
Q Consensus 443 ~ 443 (545)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 64
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=133.53 Aligned_cols=85 Identities=28% Similarity=0.442 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 44579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
.....
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 76643
No 65
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=134.80 Aligned_cols=83 Identities=34% Similarity=0.667 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
..+++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44568999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCC
Q 009052 443 NQG 445 (545)
Q Consensus 443 ~~~ 445 (545)
.++
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 654
No 66
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=2.4e-17 Score=133.64 Aligned_cols=85 Identities=28% Similarity=0.475 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCcc---CCeEEEE
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM---GDKTLTV 439 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~---~g~~l~v 439 (545)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..+ .|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 3446899999999999999999999999999999999988999999999999999999999999999988 8999999
Q ss_pred EEcCCCCC
Q 009052 440 RRANQGAN 447 (545)
Q Consensus 440 ~~a~~~~~ 447 (545)
.|+.....
T Consensus 91 ~~a~~~~~ 98 (106)
T 2dgp_A 91 KPADSESR 98 (106)
T ss_dssp EECCCCSC
T ss_pred EECCcccc
Confidence 99976653
No 67
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-17 Score=130.41 Aligned_cols=82 Identities=26% Similarity=0.596 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34689999999999999999999999999999999997 89999999999999999999999999999999999999996
Q ss_pred CCC
Q 009052 444 QGA 446 (545)
Q Consensus 444 ~~~ 446 (545)
++.
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 68
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=130.95 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccE--------EEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCe
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRG--------FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK 435 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~ 435 (545)
..++|||+|||..+++++|+++|++||.|.. |.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3468999999999999999999999999999 99999988999999999999999999999999999999999
Q ss_pred EEEEEEcC
Q 009052 436 TLTVRRAN 443 (545)
Q Consensus 436 ~l~v~~a~ 443 (545)
.|.|.+|+
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999973
No 69
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=131.89 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhC--CCccCCeEEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN--GIKMGDKTLTVRR 441 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~--g~~~~g~~l~v~~ 441 (545)
..++|||+|||+.+++++|+++|++||.|+.|.|+++ +|||||+|.+.++|.+|++.|+ +..|.|+.|.|.|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4468999999999999999999999999999999876 7999999999999999999886 4789999999999
Q ss_pred cCCCCCCC
Q 009052 442 ANQGANQP 449 (545)
Q Consensus 442 a~~~~~~~ 449 (545)
+..+....
T Consensus 89 A~~~~~~~ 96 (105)
T 1sjq_A 89 SNHKELKT 96 (105)
T ss_dssp CSSSSCCC
T ss_pred cCCCCCCc
Confidence 97765443
No 70
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=133.30 Aligned_cols=86 Identities=26% Similarity=0.400 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhC------CCccCCeE
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN------GIKMGDKT 436 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~------g~~~~g~~ 436 (545)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|| |..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 345689999999999999999999999999999999998899999999999999999999999999 99999999
Q ss_pred EEEEEcCCCCCC
Q 009052 437 LTVRRANQGANQ 448 (545)
Q Consensus 437 l~v~~a~~~~~~ 448 (545)
|.|.|+..+...
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999766543
No 71
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.5e-17 Score=125.09 Aligned_cols=72 Identities=22% Similarity=0.353 Sum_probs=68.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...|+|+||++.+++++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.|||..|.|++|.|.+|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 34799999999999999999999999999999876 4999999999999999999999999999999999998
No 72
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=2.8e-18 Score=173.78 Aligned_cols=83 Identities=24% Similarity=0.461 Sum_probs=78.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
+.++|||+|||..+++++|.++|++||.|+.|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 34689999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CCC
Q 009052 444 QGA 446 (545)
Q Consensus 444 ~~~ 446 (545)
...
T Consensus 181 ~~~ 183 (437)
T 3pgw_S 181 GRT 183 (437)
T ss_pred CCC
Confidence 554
No 73
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=3.5e-17 Score=134.54 Aligned_cols=83 Identities=28% Similarity=0.540 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34689999999999999999999999999999999997 89999999999999999999999999999999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
....
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6653
No 74
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=131.58 Aligned_cols=83 Identities=19% Similarity=0.385 Sum_probs=77.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCC---CCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRE---TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
.++|||+|||..+++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 84 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 46899999999999999999999999999999998865 558899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 009052 442 ANQGAN 447 (545)
Q Consensus 442 a~~~~~ 447 (545)
+.....
T Consensus 85 a~~~~~ 90 (98)
T 2cpf_A 85 SERATK 90 (98)
T ss_dssp SSCSSC
T ss_pred ccCCCC
Confidence 976654
No 75
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=128.77 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCc--cCCeEEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIK--MGDKTLTVRR 441 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~--~~g~~l~v~~ 441 (545)
+.++|||+|||..+++++|.++|++||.|..|.+++. +|+|||+|.+.++|.+|+..|+|.. |.|+.|.|.|
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 4568999999999999999999999999999999864 7899999999999999999999875 7899999999
Q ss_pred cCCCC
Q 009052 442 ANQGA 446 (545)
Q Consensus 442 a~~~~ 446 (545)
++.+.
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 96653
No 76
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.5e-17 Score=131.80 Aligned_cols=84 Identities=25% Similarity=0.454 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeec-CCCCCcceEEEEEecChHHHHHHHHHh-CCCccCCeEEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKD-RETGNSKGYAFCVYQDLSVTDIACAAL-NGIKMGDKTLTVRR 441 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~e~A~~A~~~l-~g~~~~g~~l~v~~ 441 (545)
..++|||+|||..+++++|+++|+.||.|..|.|+.+ +.++.++|||||+|.+.++|.+||..| ||..|.|+.|.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~ 93 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 93 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEe
Confidence 4468999999999999999999999999999999998 678999999999999999999999999 99999999999999
Q ss_pred cCCCCC
Q 009052 442 ANQGAN 447 (545)
Q Consensus 442 a~~~~~ 447 (545)
+.....
T Consensus 94 a~~~~~ 99 (107)
T 2cph_A 94 ADSEVT 99 (107)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 977654
No 77
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=2.5e-17 Score=144.88 Aligned_cols=141 Identities=21% Similarity=0.182 Sum_probs=79.3
Q ss_pred EEecCHHHHHHHH-HcCCceec--CceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCC
Q 009052 298 VEMRSVEEASNAM-ALDGIIFE--GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLP 374 (545)
Q Consensus 298 V~F~~~~~A~~a~-~l~g~~~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 374 (545)
.+|.+.++|..|+ .+++.... |+.+...+....... ..... .+. ...............++|||+|||
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~---~~~~~-~~s-----~~~~~~~~~~~~~~~~~l~V~nLp 81 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIH---SYERV-RNE-----DDDELEPGPQRSVEGWILFVTSIH 81 (165)
T ss_dssp ----------------------------------------------------------------CCCCC-CEEEEEESCC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccccc---Ccccc-ccC-----CCCCCCCCCCCCCCCCEEEEeCCC
Confidence 7899999999999 78776554 555544432111000 00000 000 000000011112334689999999
Q ss_pred CCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCCCC
Q 009052 375 YYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGAN 447 (545)
Q Consensus 375 ~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 447 (545)
..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.....
T Consensus 82 ~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 82 EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred CCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999988999999999999999999999999999999999999999966543
No 78
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.6e-17 Score=129.16 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIR----ELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 439 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v 439 (545)
..++|||+|||..+++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44689999999999999999 99999999999999988654 889999999999999999999999999999999
Q ss_pred EEcCCCC
Q 009052 440 RRANQGA 446 (545)
Q Consensus 440 ~~a~~~~ 446 (545)
.++....
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9996654
No 79
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=133.11 Aligned_cols=81 Identities=26% Similarity=0.388 Sum_probs=77.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+..
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 35899999999999999999999999999999999988999999999999999999999999999999999999999965
Q ss_pred C
Q 009052 445 G 445 (545)
Q Consensus 445 ~ 445 (545)
+
T Consensus 103 ~ 103 (106)
T 1p27_B 103 R 103 (106)
T ss_dssp S
T ss_pred C
Confidence 4
No 80
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=7.8e-17 Score=130.38 Aligned_cols=83 Identities=25% Similarity=0.409 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCC---eEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD---KTLTVR 440 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g---~~l~v~ 440 (545)
..++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|.| +.|.|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 35789999999999999999999999999999999996 79999999999999999999999999999988 999999
Q ss_pred EcCCCCC
Q 009052 441 RANQGAN 447 (545)
Q Consensus 441 ~a~~~~~ 447 (545)
|+.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9976653
No 81
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=9.2e-18 Score=134.20 Aligned_cols=77 Identities=18% Similarity=0.322 Sum_probs=75.1
Q ss_pred CeEEEcCCCC------CCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCC-eEEE
Q 009052 366 DRIFVGGLPY------YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD-KTLT 438 (545)
Q Consensus 366 ~~l~v~nlp~------~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g-~~l~ 438 (545)
++|||+|||. .+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.| +.|.
T Consensus 7 ~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~ 86 (100)
T 3ns6_A 7 QYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLF 86 (100)
T ss_dssp GEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred cEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEE
Confidence 5899999999 99999999999999999999999998899999999999999999999999999999999 9999
Q ss_pred EEEc
Q 009052 439 VRRA 442 (545)
Q Consensus 439 v~~a 442 (545)
|.++
T Consensus 87 V~~a 90 (100)
T 3ns6_A 87 LYTM 90 (100)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9998
No 82
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=129.43 Aligned_cols=80 Identities=30% Similarity=0.511 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|++||.|..|.|+.++. |.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 346899999999999999999999999999999999964 8999999999999999999999999999999999999985
Q ss_pred C
Q 009052 444 Q 444 (545)
Q Consensus 444 ~ 444 (545)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 83
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.71 E-value=4.5e-18 Score=135.46 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=70.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
-..++|||+|||+++|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAK------LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeE------eeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3567899999999999999999999999876654 3344456778999999999999999999 89999999999
Q ss_pred eEEeCCC
Q 009052 322 VKVRRPS 328 (545)
Q Consensus 322 l~v~~~~ 328 (545)
|.|.+++
T Consensus 91 l~V~~Ak 97 (99)
T 4fxv_A 91 IKVSYAR 97 (99)
T ss_dssp CEEEECC
T ss_pred EEEEEee
Confidence 9999864
No 84
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=5.5e-17 Score=131.77 Aligned_cols=80 Identities=24% Similarity=0.401 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 445689999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred C
Q 009052 443 N 443 (545)
Q Consensus 443 ~ 443 (545)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 85
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.5e-17 Score=130.29 Aligned_cols=83 Identities=20% Similarity=0.358 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34568999999999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
..+..
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 77654
No 86
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.2e-17 Score=132.12 Aligned_cols=85 Identities=24% Similarity=0.351 Sum_probs=79.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcc--------EEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCC
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLR--------GFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD 434 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g 434 (545)
...++|||+|||..+++++|+++|+.||.|. .|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3457899999999999999999999999999 69999998899999999999999999999999999999999
Q ss_pred eEEEEEEcCCCCC
Q 009052 435 KTLTVRRANQGAN 447 (545)
Q Consensus 435 ~~l~v~~a~~~~~ 447 (545)
+.|.|.|+..+..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999977654
No 87
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=8e-17 Score=129.73 Aligned_cols=83 Identities=25% Similarity=0.545 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.|| |..|.|+.++.++.++|||||+|.+.++|.+|| .|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3456899999999999999999999997 999999999889999999999999999999999 99999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76653
No 88
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=2.7e-17 Score=137.74 Aligned_cols=84 Identities=24% Similarity=0.439 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 362 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 362 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
..+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34457899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009052 442 ANQG 445 (545)
Q Consensus 442 a~~~ 445 (545)
+..+
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9654
No 89
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=130.41 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34468999999999999999999999999998888888889999999999999999999999999999999999999998
Q ss_pred CCC
Q 009052 443 NQG 445 (545)
Q Consensus 443 ~~~ 445 (545)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 643
No 90
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=6.8e-17 Score=126.46 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=75.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++...
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 58999999999999999999999999999999999889999999999999999999999 99999999999999999654
No 91
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-16 Score=127.67 Aligned_cols=83 Identities=25% Similarity=0.430 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|++||.|..|.|+.++. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 3457899999999999999999999999999999999843 36899999999999999999999999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 76553
No 92
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=131.09 Aligned_cols=87 Identities=21% Similarity=0.456 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 362 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 362 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||.. +|..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34457899999999999999999999999999999999988999999999999999999999988 99999999999999
Q ss_pred cCCCCCCC
Q 009052 442 ANQGANQP 449 (545)
Q Consensus 442 a~~~~~~~ 449 (545)
+.++...+
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 97766543
No 93
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=8.6e-17 Score=126.69 Aligned_cols=82 Identities=27% Similarity=0.519 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|++||.|..|.|+.+ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3468999999999999999999999999999999984 78899999999999999999999999999999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
....
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6653
No 94
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=5.3e-17 Score=132.58 Aligned_cols=82 Identities=29% Similarity=0.353 Sum_probs=77.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+..
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 35899999999999999999999999999999999988999999999999999999999999999999999999999965
Q ss_pred CC
Q 009052 445 GA 446 (545)
Q Consensus 445 ~~ 446 (545)
+.
T Consensus 106 ~~ 107 (110)
T 1oo0_B 106 KG 107 (110)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 95
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=127.30 Aligned_cols=81 Identities=21% Similarity=0.441 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCC-cceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN-SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~-~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
+++|||+|||..+++++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 35899999999999999999999999999999999876655 89999999999999999999999999999999999995
Q ss_pred CC
Q 009052 444 QG 445 (545)
Q Consensus 444 ~~ 445 (545)
+.
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 96
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.3e-17 Score=131.11 Aligned_cols=83 Identities=28% Similarity=0.382 Sum_probs=78.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHh-cCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCc-cCCeEEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLES-FGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIK-MGDKTLTVRR 441 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~-~~g~~l~v~~ 441 (545)
..++|||+|||..+++++|+++|+. ||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||.. |.|+.|.|.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 3468999999999999999999999 9999999999997 99999999999999999999999999999 9999999999
Q ss_pred cCCCCC
Q 009052 442 ANQGAN 447 (545)
Q Consensus 442 a~~~~~ 447 (545)
+.....
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 966654
No 97
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=9.7e-17 Score=132.79 Aligned_cols=80 Identities=25% Similarity=0.436 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 44578999999999999999999999999999999999889999999999999999999999999999999999999997
No 98
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=9.7e-17 Score=124.92 Aligned_cols=78 Identities=19% Similarity=0.511 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
..++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++ +++..|.|+.|.|.+|
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 44689999999999999999999999999999999998899999999999999999999994 5888999999999986
No 99
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=3.5e-16 Score=130.57 Aligned_cols=86 Identities=21% Similarity=0.354 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 362 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 362 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
....++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3445689999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 009052 442 ANQGANQ 448 (545)
Q Consensus 442 a~~~~~~ 448 (545)
+......
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9766543
No 100
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-16 Score=127.57 Aligned_cols=84 Identities=21% Similarity=0.521 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.||.|..|.|+.++. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4457999999999999999999999999999999998853 37999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 009052 443 NQGANQ 448 (545)
Q Consensus 443 ~~~~~~ 448 (545)
......
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 776543
No 101
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=131.40 Aligned_cols=83 Identities=36% Similarity=0.625 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|++ .|.|+.|.|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 3457899999999999999999999999999999999988999999999999999999999999998 899999999999
Q ss_pred CCCC
Q 009052 443 NQGA 446 (545)
Q Consensus 443 ~~~~ 446 (545)
....
T Consensus 94 ~~~~ 97 (116)
T 2cqd_A 94 YLGA 97 (116)
T ss_dssp TTTC
T ss_pred ccCC
Confidence 6554
No 102
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.6e-17 Score=129.79 Aligned_cols=82 Identities=28% Similarity=0.520 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCC-CCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET-GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
+.++|||+|||..+++++|+++|+.|| |..|.|+.++.+ |.++|||||+|.+.++|.+|| .|||..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 446899999999999999999999999 999999999877 999999999999999999999 99999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
..+..
T Consensus 92 ~~~~~ 96 (104)
T 1wi8_A 92 DQAQD 96 (104)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 77654
No 103
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=127.17 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHh--CCCccCCeEEEEE
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL--NGIKMGDKTLTVR 440 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l--~g~~~~g~~l~v~ 440 (545)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..| ++..|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 44578999999999999999999999999999998875 899999999999999999987 5778999999999
Q ss_pred EcCCCCCC
Q 009052 441 RANQGANQ 448 (545)
Q Consensus 441 ~a~~~~~~ 448 (545)
|+......
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99766543
No 104
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=2.6e-17 Score=130.61 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
++++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 34689999999999999999999999999999999888899999999999999999999999999999999999999984
No 105
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=2.5e-17 Score=124.28 Aligned_cols=75 Identities=24% Similarity=0.546 Sum_probs=71.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
+|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++ |||..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999996 9999999999999885
No 106
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-17 Score=128.80 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=69.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHH-HhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-Hc-CCceecCce
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVM-AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-AL-DGIIFEGAP 321 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l-~g~~~~g~~ 321 (545)
+++|||+|||+++|+++|+++|++|| .|.++. ++.+..++.++|||||+|.+.++|.+|| .+ ++..|.|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~------i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVR------LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCC------SSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEE------EEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 46899999999999999999999999 787776 4555667889999999999999999999 56 456799999
Q ss_pred eEEeCCCCC
Q 009052 322 VKVRRPSDY 330 (545)
Q Consensus 322 l~v~~~~~~ 330 (545)
|.|.++...
T Consensus 75 i~V~~a~~~ 83 (91)
T 2lxi_A 75 VSMHYSDPK 83 (91)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987643
No 107
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.5e-17 Score=131.05 Aligned_cols=80 Identities=41% Similarity=0.735 Sum_probs=76.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+...
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999544
No 108
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=8.5e-17 Score=139.22 Aligned_cols=80 Identities=24% Similarity=0.428 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFG--PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
...+|||+|||..+++++|+++|+.|| .|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 346899999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred cC
Q 009052 442 AN 443 (545)
Q Consensus 442 a~ 443 (545)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 94
No 109
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-16 Score=129.38 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345689999999999999999999999999999999986 6999999999999999999999999999999999999999
Q ss_pred CCCC
Q 009052 443 NQGA 446 (545)
Q Consensus 443 ~~~~ 446 (545)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 6543
No 110
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-16 Score=133.36 Aligned_cols=86 Identities=35% Similarity=0.543 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 362 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 362 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
....++|||+|||..+++++|+++|+.||.|+.|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34557899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 009052 442 ANQGAN 447 (545)
Q Consensus 442 a~~~~~ 447 (545)
+.....
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 977654
No 111
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=130.43 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhC--CCccCCeEEEEE
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN--GIKMGDKTLTVR 440 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~--g~~~~g~~l~v~ 440 (545)
.+.++|||+|||+.+++++|+++|++||.|+.|.|+.+ +|||||+|.+.++|.+|++.|+ +..|.|+.|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34568999999999999999999999999999999876 7999999999999999999987 468999999999
Q ss_pred EcCCCCCC
Q 009052 441 RANQGANQ 448 (545)
Q Consensus 441 ~a~~~~~~ 448 (545)
|+..+...
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 99776544
No 112
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.1e-17 Score=128.46 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCC--ccCCeEEEEE
Q 009052 364 GPDRIFVGGLPY-YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI--KMGDKTLTVR 440 (545)
Q Consensus 364 ~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~--~~~g~~l~v~ 440 (545)
+.++|||+|||+ .+++++|+++|++||.|..|.|+++ +|||||+|.+.++|..|+..||+. .|.|+.|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 456899999999 9999999999999999999999876 689999999999999999999864 5999999999
Q ss_pred EcCCCC
Q 009052 441 RANQGA 446 (545)
Q Consensus 441 ~a~~~~ 446 (545)
|+....
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 997543
No 113
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.7e-17 Score=130.26 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=72.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
.+|||+|||..+++++|+++|++||.|..|.|+.++. |.++|||||+|.+.++|.+||. ++|..|+|+.|.|.++
T Consensus 12 ~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 12 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp GCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 5899999999999999999999999999999999976 9999999999999999999997 8999999999999997
No 114
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=1.3e-16 Score=131.37 Aligned_cols=77 Identities=23% Similarity=0.488 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3468999999999999999999999999999999865 4558999999999999999999999999999999999993
No 115
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.4e-16 Score=126.06 Aligned_cols=85 Identities=22% Similarity=0.384 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||. ++..|+|+.|.|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 345689999999999999999999999999999999998899999999999999999999997 478999999999999
Q ss_pred CCCCCCC
Q 009052 443 NQGANQP 449 (545)
Q Consensus 443 ~~~~~~~ 449 (545)
..+....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqg_A 91 NSKQSQD 97 (103)
T ss_dssp CTTCCCC
T ss_pred CCCCcCC
Confidence 7765443
No 116
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=8.1e-17 Score=134.96 Aligned_cols=83 Identities=25% Similarity=0.377 Sum_probs=78.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|.|+.|.|.|+..
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 45899999999999999999999999999999999988999999999999999999999999999999999999999966
Q ss_pred CCC
Q 009052 445 GAN 447 (545)
Q Consensus 445 ~~~ 447 (545)
...
T Consensus 102 ~~~ 104 (126)
T 3ex7_B 102 RGP 104 (126)
T ss_dssp SSS
T ss_pred CCC
Confidence 553
No 117
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=1.1e-16 Score=130.01 Aligned_cols=85 Identities=25% Similarity=0.411 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..+ |..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 34468999999999999999999999999999999999889999999999999999999999876 59999999999999
Q ss_pred CCCCCC
Q 009052 443 NQGANQ 448 (545)
Q Consensus 443 ~~~~~~ 448 (545)
.....+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 776544
No 118
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.6e-16 Score=119.52 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=67.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
.+..|||+||++.+||++|+++|.+||+ |.++.+..++|||||+|.+.++|.+|+ .||+..|.|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~------------V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I 73 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGP------------LVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTI 73 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCC------------EEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 3568999999999999999999999996 666777779999999999999999999 999999999999
Q ss_pred EEeCCC
Q 009052 323 KVRRPS 328 (545)
Q Consensus 323 ~v~~~~ 328 (545)
.|..+.
T Consensus 74 ~V~~A~ 79 (89)
T 2wbr_A 74 FAESPS 79 (89)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 999874
No 119
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=126.83 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCC--ccCCeEEEEE
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI--KMGDKTLTVR 440 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~--~~~g~~l~v~ 440 (545)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++. .|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34568999999999999999999999999999998865 799999999999999999988754 5999999999
Q ss_pred EcCCCCC
Q 009052 441 RANQGAN 447 (545)
Q Consensus 441 ~a~~~~~ 447 (545)
|+..+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9976553
No 120
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=129.05 Aligned_cols=81 Identities=22% Similarity=0.543 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|++||.|..|.|+.++ +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 345789999999999999999999999999999999884 448999999999999999999999999999999999999
Q ss_pred CCC
Q 009052 443 NQG 445 (545)
Q Consensus 443 ~~~ 445 (545)
..+
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 121
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-16 Score=122.91 Aligned_cols=80 Identities=24% Similarity=0.395 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
...+|||+|||..+++++|+++|+.| .|..|.|+.+ .+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.++.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 34689999999999999999999999 9999999999 789999999999999999999999 99999999999999996
Q ss_pred CCC
Q 009052 444 QGA 446 (545)
Q Consensus 444 ~~~ 446 (545)
...
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 122
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=2.4e-16 Score=137.31 Aligned_cols=85 Identities=22% Similarity=0.375 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 76543
No 123
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=2.6e-17 Score=129.13 Aligned_cols=81 Identities=35% Similarity=0.525 Sum_probs=74.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.+ |.+|+..|||..|+|+.|.|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999888999999999999999 99999999999999999999999665
Q ss_pred CC
Q 009052 446 AN 447 (545)
Q Consensus 446 ~~ 447 (545)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 124
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-17 Score=128.41 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 34689999999999999999999999999999999998899999999999999999999999999999999999887763
No 125
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6.2e-17 Score=122.87 Aligned_cols=75 Identities=27% Similarity=0.501 Sum_probs=72.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
+|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..++ ..|+|+.|.|.+|
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 79999999999999999999999999999999998889999999999999999999999999 9999999999987
No 126
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=6.7e-17 Score=136.21 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccE--EEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCC----ccCCeE
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRG--FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI----KMGDKT 436 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~----~~~g~~ 436 (545)
...++|||+|||+.+++++|+++|++||.|.. |.|+.++.+|.++|||||+|.+. +|.+|+..|||. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 44578999999999999999999999999976 99999988999999999999999 999999999999 999999
Q ss_pred EEEEEcCCCC
Q 009052 437 LTVRRANQGA 446 (545)
Q Consensus 437 l~v~~a~~~~ 446 (545)
|.|.|+....
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999996653
No 127
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=131.18 Aligned_cols=76 Identities=18% Similarity=0.402 Sum_probs=74.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.|+
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 68999999999999999999999999999999999888999999999999999999999 99999999999999998
No 128
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=127.99 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=73.4
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCe-EE
Q 009052 365 PDRIFVGGLPYYF------TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK-TL 437 (545)
Q Consensus 365 ~~~l~v~nlp~~~------~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~-~l 437 (545)
.++|||+|||..+ ++++|+++|++||.|..|.|+. .+|.++|||||+|.+.++|.+|+..|||..|.|+ .|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 4689999999999 7899999999999999999983 5899999999999999999999999999999998 99
Q ss_pred EEEEcCCC
Q 009052 438 TVRRANQG 445 (545)
Q Consensus 438 ~v~~a~~~ 445 (545)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99999644
No 129
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.9e-16 Score=126.05 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|.+||+.|||..|.|+.|.|.|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34568999999999999999999999999999999654 557999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
.....
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 76653
No 130
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=134.51 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 362 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 362 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred c
Q 009052 442 A 442 (545)
Q Consensus 442 a 442 (545)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 131
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-17 Score=130.32 Aligned_cols=83 Identities=18% Similarity=0.291 Sum_probs=69.8
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHH--hhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCc--
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMA--AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGI-- 315 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~--i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~-- 315 (545)
......||||+|||+.+|+++|+++|++||. +..++ ++.+..++.++|||||+|.+.++|.+|+ .|||.
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~------i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~ 78 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIR------LIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHP 78 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEE------CCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSS
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEE------EEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCC
Confidence 3456679999999999999999999999995 44443 3444557889999999999999999999 89886
Q ss_pred --eecCceeEEeCCCC
Q 009052 316 --IFEGAPVKVRRPSD 329 (545)
Q Consensus 316 --~~~g~~l~v~~~~~ 329 (545)
.|.|++|.|.+++.
T Consensus 79 ~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 79 PLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CEEETTEEEEEEECCC
T ss_pred CceECCEEEEEEEccC
Confidence 58999999998753
No 132
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=129.55 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCCCCHHHHH---HHHHhcCCccEEEEeecCCCC---CcceEEEEEecChHHHHHHHHHhCCCccCCeEEE
Q 009052 365 PDRIFVGGLPYYFTEAQIR---ELLESFGPLRGFDLVKDRETG---NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 438 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~ 438 (545)
.++|||+|||..+++++|+ ++|++||.|..|.|+.+..++ .++|||||+|.+.++|.+||+.|||..|.|+.|.
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 4689999999999999999 999999999999999886544 4569999999999999999999999999999999
Q ss_pred EEEcCCCC
Q 009052 439 VRRANQGA 446 (545)
Q Consensus 439 v~~a~~~~ 446 (545)
|.|+..+.
T Consensus 95 V~~a~~k~ 102 (111)
T 2cpi_A 95 ASLGTTKY 102 (111)
T ss_dssp EESCCCCS
T ss_pred EEeccccc
Confidence 99997665
No 133
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=127.00 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
....+|||+|||+.+++++|+++|++|| ++.|.|+.++ +|.++|||||+|.+.++|.+|| .+|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 3446899999999999999999999999 4599999997 8999999999999999999999 57999999999999998
Q ss_pred CCCC
Q 009052 443 NQGA 446 (545)
Q Consensus 443 ~~~~ 446 (545)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 134
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=6.3e-17 Score=129.42 Aligned_cols=81 Identities=27% Similarity=0.518 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecC-CCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR-ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
...++|||+|||..+++++|+++|+.|| |..|.|+.++ .+|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3446899999999999999999999999 9999999987 58999999999999999999999 9999999999999999
Q ss_pred cCCC
Q 009052 442 ANQG 445 (545)
Q Consensus 442 a~~~ 445 (545)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 9654
No 135
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.3e-16 Score=123.44 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=67.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcC--CceecC
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD--GIIFEG 319 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~--g~~~~g 319 (545)
.+.++|||+|||+++|+++|+++|++||. |.++.+..++|||||+|.+.++|.+|+ .|+ +..|.|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~------------V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGK------------VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 45789999999999999999999999996 566666677999999999999999999 675 478999
Q ss_pred ceeEEeCCCCCC
Q 009052 320 APVKVRRPSDYN 331 (545)
Q Consensus 320 ~~l~v~~~~~~~ 331 (545)
++|.|.++....
T Consensus 82 r~l~V~~A~~~~ 93 (105)
T 1sjq_A 82 QPIYIQFSNHKE 93 (105)
T ss_dssp EECCBCCCSSSS
T ss_pred EEEEEEEcCCCC
Confidence 999999986543
No 136
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-16 Score=129.31 Aligned_cols=82 Identities=24% Similarity=0.487 Sum_probs=77.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||.. +|..|.|+.|.|.++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 36899999999999999999999999999999999988999999999999999999999987 99999999999999977
Q ss_pred CCC
Q 009052 445 GAN 447 (545)
Q Consensus 445 ~~~ 447 (545)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 137
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=129.53 Aligned_cols=80 Identities=11% Similarity=0.204 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIR----ELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 439 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v 439 (545)
+.++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34689999999999999876 6999999999988753 5788999999999999999999999999999999999
Q ss_pred EEcCCCC
Q 009052 440 RRANQGA 446 (545)
Q Consensus 440 ~~a~~~~ 446 (545)
.|+....
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9996543
No 138
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=127.36 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCC-ccEEEEe-ecCCCCCcceEEEEEecChHHHHHHHHHhC--CCccCCeEEEEE
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLV-KDRETGNSKGYAFCVYQDLSVTDIACAALN--GIKMGDKTLTVR 440 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~i~-~~~~~g~~~g~afV~f~~~e~A~~A~~~l~--g~~~~g~~l~v~ 440 (545)
.++|||+|||..+++++|+++|+.||. |..|.|+ .+..+|.++|||||+|.+.++|.+|+..|+ +..|.|+.|.|.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 358999999999999999999999998 9999998 777788999999999999999999999996 589999999999
Q ss_pred EcCCCCC
Q 009052 441 RANQGAN 447 (545)
Q Consensus 441 ~a~~~~~ 447 (545)
|+.+...
T Consensus 88 ~a~~~~~ 94 (109)
T 2dis_A 88 WAEPEID 94 (109)
T ss_dssp ESCSSCS
T ss_pred EcCCCCC
Confidence 9976543
No 139
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=3.4e-16 Score=130.78 Aligned_cols=80 Identities=21% Similarity=0.418 Sum_probs=76.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|+|+.|.|.|+...
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 58999999999999999999999999999999999889999999999999999999999 89999999999999999654
Q ss_pred C
Q 009052 446 A 446 (545)
Q Consensus 446 ~ 446 (545)
.
T Consensus 116 ~ 116 (124)
T 2jwn_A 116 M 116 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 140
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=3.5e-16 Score=129.00 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCC---ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGP---LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 440 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~ 440 (545)
..++|||+|||+.+++++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||. |||..|+|+.|.|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 3468999999999999999999999999 89999999965 9999999999999999999998 99999999999999
Q ss_pred Ec
Q 009052 441 RA 442 (545)
Q Consensus 441 ~a 442 (545)
++
T Consensus 94 ~a 95 (118)
T 2db1_A 94 KS 95 (118)
T ss_dssp EE
T ss_pred EC
Confidence 98
No 141
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.6e-16 Score=123.74 Aligned_cols=79 Identities=33% Similarity=0.529 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|++||.|..|.|..+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 34568999999999999999999999999999999865 789999999999999999999999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
.....
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 76653
No 142
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=129.02 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCc-cEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPL-RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
....+|||+|||..+++++|+++|+.||.| ..|.|+.++ +|.++|||||+|.+.++|.+||.. ||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 345689999999999999999999999999 899999997 999999999999999999999976 99999999999999
Q ss_pred cC
Q 009052 442 AN 443 (545)
Q Consensus 442 a~ 443 (545)
+.
T Consensus 91 a~ 92 (114)
T 2cpy_A 91 VT 92 (114)
T ss_dssp EC
T ss_pred CC
Confidence 83
No 143
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=1.5e-16 Score=120.09 Aligned_cols=75 Identities=25% Similarity=0.447 Sum_probs=71.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
+|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+. ++|..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998889999999999999999999996 5999999999999875
No 144
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=4.6e-16 Score=132.78 Aligned_cols=85 Identities=19% Similarity=0.263 Sum_probs=71.5
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
.....++|||+|||+++|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVK------IVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEE------EEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 445678999999999999999999999999876543 2222234567899999999999999999 799999999
Q ss_pred ceeEEeCCCCCC
Q 009052 320 APVKVRRPSDYN 331 (545)
Q Consensus 320 ~~l~v~~~~~~~ 331 (545)
+.|.|.++....
T Consensus 112 ~~l~v~~a~~~~ 123 (139)
T 1u6f_A 112 KRLKVALAASGH 123 (139)
T ss_dssp CEEEEEESSCCC
T ss_pred eEEEEEECCCCC
Confidence 999999876554
No 145
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.8e-16 Score=125.20 Aligned_cols=82 Identities=16% Similarity=0.319 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccE-EEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRG-FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...+|||+|||+.+++++|+++|+.||.|.. |.|+.+ .+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 3468999999999999999999999999987 888888 7899999999999999999999987 999999999999998
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
.....
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 66543
No 146
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=4.6e-16 Score=125.73 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=70.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcC-CccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFG-PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..+|||+|||+.+++++|+++|++|| .|..+.|... .++|||||+|.+.++|.+||+.|||..|+|+.|.|.++.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 45899999999999999999999999 8999998643 368999999999999999999999999999999999985
Q ss_pred CC
Q 009052 444 QG 445 (545)
Q Consensus 444 ~~ 445 (545)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 147
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6.4e-16 Score=122.91 Aligned_cols=77 Identities=32% Similarity=0.610 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccC--CeEEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG--DKTLTVRR 441 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~--g~~l~v~~ 441 (545)
+.++|||+|||..+++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..|||..|. |+.|.|.|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 3468999999999999999999999999999999765 789999999999999999999999999 99999999
Q ss_pred cCCCC
Q 009052 442 ANQGA 446 (545)
Q Consensus 442 a~~~~ 446 (545)
+.++.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 96653
No 148
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.2e-16 Score=120.41 Aligned_cols=76 Identities=28% Similarity=0.497 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 44689999999999999999999999999999987 5799999999999999999999999999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 149
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.2e-16 Score=119.37 Aligned_cols=73 Identities=23% Similarity=0.430 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHh-CCCccCCeEEEEEEc
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL-NGIKMGDKTLTVRRA 442 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l-~g~~~~g~~l~v~~a 442 (545)
..++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..| +|..|.|+.|.|.|+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 3468999999999999999999999999999999875 799999999999999999989 999999999999997
No 150
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.7e-16 Score=126.84 Aligned_cols=80 Identities=19% Similarity=0.452 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCcc--------CCe
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM--------GDK 435 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~--------~g~ 435 (545)
..++|||+|||..+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..|||..| .++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 44689999999999999999999999999999999997 899999999999999999999999999999 688
Q ss_pred EEEEEEcCC
Q 009052 436 TLTVRRANQ 444 (545)
Q Consensus 436 ~l~v~~a~~ 444 (545)
.|.|.|+.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999964
No 151
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.64 E-value=5.8e-17 Score=131.53 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=70.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
+.++|||+|||+.+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~------i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVE------ILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEE------EEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 567999999999999999999999999876654 3444445788999999999999999999 899999999999
Q ss_pred EEeCCCC
Q 009052 323 KVRRPSD 329 (545)
Q Consensus 323 ~v~~~~~ 329 (545)
.|.++..
T Consensus 79 ~V~~a~~ 85 (110)
T 3s8s_A 79 HAQLDIK 85 (110)
T ss_dssp EEEECST
T ss_pred EEEECCC
Confidence 9988653
No 152
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-15 Score=123.48 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCC-----eEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD-----KTLT 438 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g-----~~l~ 438 (545)
..++|||+|||..+++++|+++|++||.|+.|.|+.+ |||||+|.+.++|.+||+.|||..|.| +.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 3468999999999999999999999999999999875 799999999999999999999999999 9999
Q ss_pred EEEcCCCCC
Q 009052 439 VRRANQGAN 447 (545)
Q Consensus 439 v~~a~~~~~ 447 (545)
|.++.+...
T Consensus 87 V~~a~~~~~ 95 (108)
T 1x4c_A 87 VKVDGPRSP 95 (108)
T ss_dssp EEESSCCSC
T ss_pred EEeCCCCCC
Confidence 999977543
No 153
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=122.27 Aligned_cols=72 Identities=25% Similarity=0.369 Sum_probs=67.4
Q ss_pred CeEEEcCCCCCC------CHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCe-EEE
Q 009052 366 DRIFVGGLPYYF------TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK-TLT 438 (545)
Q Consensus 366 ~~l~v~nlp~~~------~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~-~l~ 438 (545)
++|||+|||..+ ++++|+++|++||.|..|.|+. .+|.++|||||+|.+.++|.+|+..|||..|.|+ .|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 489999999999 7799999999999999999883 5889999999999999999999999999999999 887
Q ss_pred E
Q 009052 439 V 439 (545)
Q Consensus 439 v 439 (545)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 154
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=125.09 Aligned_cols=74 Identities=31% Similarity=0.455 Sum_probs=64.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecC-CCcEEEEEecCHHHHHHHH-HcCCceecCceeE
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVK 323 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~ 323 (545)
++|||+|||+++|+++|+++|++||.|.. +.+.. ++|||||+|.+.++|.+|+ .|++..|.|+.|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~------------v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 68 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRT------------VWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVR 68 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSE------------EEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEE------------EEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEE
Confidence 48999999999999999999999997643 22222 6999999999999999999 7999999999999
Q ss_pred EeCCCCCC
Q 009052 324 VRRPSDYN 331 (545)
Q Consensus 324 v~~~~~~~ 331 (545)
|.++....
T Consensus 69 V~~a~~~~ 76 (101)
T 2hvz_A 69 VELSTGMP 76 (101)
T ss_dssp EEESSSCC
T ss_pred EEEccCCC
Confidence 99876554
No 155
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=9.3e-16 Score=122.99 Aligned_cols=82 Identities=24% Similarity=0.463 Sum_probs=74.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCcee
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l 322 (545)
...++|||+|||+++|+++|+++|+.||.|.. . .+.+..++.++|||||+|.+.++|.+||.||+..|.|+.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~------~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-L------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-E------EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEE
Confidence 35679999999999999999999999999987 3 4777888999999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q 009052 323 KVRRPSDYN 331 (545)
Q Consensus 323 ~v~~~~~~~ 331 (545)
.|.++....
T Consensus 88 ~V~~a~~~~ 96 (101)
T 1fj7_A 88 KLEKPKGRD 96 (101)
T ss_dssp EEECCSCCC
T ss_pred EEEEcCCCC
Confidence 999876543
No 156
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=119.09 Aligned_cols=76 Identities=30% Similarity=0.439 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 446899999999999999999999999999999974 399999999999999999999999999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
....
T Consensus 80 ~~~~ 83 (90)
T 2dnp_A 80 KGQK 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6643
No 157
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.9e-16 Score=132.08 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
....+|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 344689999999999999999999999999986666666799999999999999999999998 9999999999999998
Q ss_pred C
Q 009052 443 N 443 (545)
Q Consensus 443 ~ 443 (545)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 158
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=122.68 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|++||.| .++.+ .++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 345799999999999999999999999976 56666 57899999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
.....
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 76643
No 159
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-16 Score=127.83 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
...+|||+|||..+++++|+++|+.||.|.. .++.+..+|.++|||||+|.+.++|.+||+ |||..|.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 3468999999999999999999999999988 666665688999999999999999999998 99999999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
....
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 160
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=4.5e-16 Score=130.75 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCC---ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGP---LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 440 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~ 440 (545)
..++|||+|||+.+++++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||+ |||..|+|+.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 3468999999999999999999999999 89999999976 9999999999999999999998 99999999999999
Q ss_pred Ec
Q 009052 441 RA 442 (545)
Q Consensus 441 ~a 442 (545)
++
T Consensus 121 ~a 122 (136)
T 2hgl_A 121 KS 122 (136)
T ss_dssp EC
T ss_pred EC
Confidence 98
No 161
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.6e-16 Score=126.25 Aligned_cols=77 Identities=22% Similarity=0.141 Sum_probs=71.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+|||..+++++|+++|++||.|..|.|+.. +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+...
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 58999999999999999999999999999998753 789999999999999999999999999999999999766
Q ss_pred CCC
Q 009052 446 ANQ 448 (545)
Q Consensus 446 ~~~ 448 (545)
...
T Consensus 85 ~~~ 87 (111)
T 1whx_A 85 VFG 87 (111)
T ss_dssp TTC
T ss_pred ccC
Confidence 543
No 162
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.63 E-value=4.6e-16 Score=121.91 Aligned_cols=77 Identities=22% Similarity=0.207 Sum_probs=68.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCce--ec
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII--FE 318 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~--~~ 318 (545)
..++++|||+|||+++|+++|+++|++||. |.++.+.+++|||||+|.+.++|.+|+ .|++.. |.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~------------V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGP------------ISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 346789999999999999999999999996 566666678999999999999999999 888765 78
Q ss_pred CceeEEeCCCCC
Q 009052 319 GAPVKVRRPSDY 330 (545)
Q Consensus 319 g~~l~v~~~~~~ 330 (545)
|++|.|.+++..
T Consensus 86 Gr~i~V~~S~~k 97 (100)
T 3r27_A 86 GHPAFVNYSTSQ 97 (100)
T ss_dssp TEEEEEEECSCS
T ss_pred CcEEEEEecccc
Confidence 999999987643
No 163
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=123.89 Aligned_cols=77 Identities=17% Similarity=0.407 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||+|||..+++++|+++|+.||.|..|.|+.+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+..
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 468999999999999999999999999999999876 78999999999999999999999999999999999977
Q ss_pred CCC
Q 009052 445 GAN 447 (545)
Q Consensus 445 ~~~ 447 (545)
...
T Consensus 99 ~~~ 101 (109)
T 1x4g_A 99 SPD 101 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 164
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-16 Score=125.97 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhC--CCccCCeEEEE
Q 009052 363 EGPDRIFVGGLPYY-FTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN--GIKMGDKTLTV 439 (545)
Q Consensus 363 ~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~--g~~~~g~~l~v 439 (545)
.+.++|||+|||+. +++++|+++|++||.|..|.|++. +|||||+|.+.++|.+|++.|+ +..|.|+.|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 34578999999998 999999999999999999999754 7999999999999999999886 46699999999
Q ss_pred EEcCCCC
Q 009052 440 RRANQGA 446 (545)
Q Consensus 440 ~~a~~~~ 446 (545)
.|+....
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9996554
No 165
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.8e-16 Score=124.48 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=70.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
.+|||+|||+.+++++|+++|+.| .|..|.|+.++ .|.++|||||+|.+.++|.+|| .|||..|+|+.|.|..+
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 489999999999999999999999 89999999996 4999999999999999999999 79999999999999888
No 166
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=2.7e-16 Score=129.43 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=71.8
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+++|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|| .||+..|.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAK------VFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEE------EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 34568999999999999999999999999886654 2333336677899999999999999999 9999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 96 ~l~V~~a~~~~ 106 (115)
T 2cpz_A 96 RLKVQLKRSKN 106 (115)
T ss_dssp ECEEECCCCSC
T ss_pred EEEEEEcCCCC
Confidence 99999976554
No 167
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-15 Score=117.90 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 346899999999999999999999999999999974 399999999999999999999999999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
....
T Consensus 81 ~~~~ 84 (92)
T 2dgt_A 81 SRLR 84 (92)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6653
No 168
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.1e-15 Score=122.83 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=72.2
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecC----h-HH---HHHHHH--HhCCCc
Q 009052 366 DRIFVGGL----PYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQD----L-SV---TDIACA--ALNGIK 431 (545)
Q Consensus 366 ~~l~v~nl----p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~-e~---A~~A~~--~l~g~~ 431 (545)
.+|||+|| |+.+++++|+++|+.||.|.+|.++.|+.||.++|||||+|.+ + ++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 3 33 788888 789999
Q ss_pred cCCeEEEEEEcCCC
Q 009052 432 MGDKTLTVRRANQG 445 (545)
Q Consensus 432 ~~g~~l~v~~a~~~ 445 (545)
|+|+.|+|.+-...
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999997443
No 169
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.63 E-value=6.1e-16 Score=143.05 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcC--CccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFG--PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
.++|||+|||..+++++|+++|+.|| .|+.|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 45899999999999999999999999 9999999999889999999999999999999999999999999999999998
Q ss_pred C
Q 009052 443 N 443 (545)
Q Consensus 443 ~ 443 (545)
.
T Consensus 148 ~ 148 (229)
T 3q2s_C 148 N 148 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 170
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=9e-16 Score=123.09 Aligned_cols=76 Identities=20% Similarity=0.370 Sum_probs=71.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+|||..+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 37999999999999999999999999999999876 5899999999999999999999999999999999999766
Q ss_pred C
Q 009052 446 A 446 (545)
Q Consensus 446 ~ 446 (545)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 171
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.7e-16 Score=128.68 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
+.++|||+|||..+++++|+++|+.||.|..|.+..+..+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 45799999999999999999999999999544333332378889999999999999999999999999999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
....
T Consensus 104 ~~~~ 107 (115)
T 2cpx_A 104 NKKQ 107 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6654
No 172
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=121.58 Aligned_cols=82 Identities=26% Similarity=0.374 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|+.| ..|.++.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 345689999999999999999999977 37788888788999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
..+..
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 76653
No 173
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=1.7e-15 Score=134.01 Aligned_cols=84 Identities=21% Similarity=0.360 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 362 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 362 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
....++|||+|||..+++++|+++|+.||.|+.|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3445789999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 009052 442 ANQGA 446 (545)
Q Consensus 442 a~~~~ 446 (545)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 95543
No 174
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=3.5e-16 Score=126.75 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC---ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEE
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGP---LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 439 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v 439 (545)
...++|||+|||+.+++++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||. |||..|+|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 34568999999999999999999999998 99999999976 9999999999999999999998 9999999999999
Q ss_pred EEcC
Q 009052 440 RRAN 443 (545)
Q Consensus 440 ~~a~ 443 (545)
.++.
T Consensus 87 ~~a~ 90 (107)
T 2lmi_A 87 YEIN 90 (107)
T ss_dssp EECC
T ss_pred EECC
Confidence 9983
No 175
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=1.4e-15 Score=123.10 Aligned_cols=76 Identities=22% Similarity=0.495 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 345789999999999999999999999999999997 689999999999999999999999999999999999
Q ss_pred CCCC
Q 009052 443 NQGA 446 (545)
Q Consensus 443 ~~~~ 446 (545)
....
T Consensus 101 ~~~~ 104 (108)
T 2jvo_A 101 KLPA 104 (108)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 6654
No 176
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=2.8e-15 Score=120.55 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 363 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
...++|||+|||..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 345689999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred CCCCCC
Q 009052 443 NQGANQ 448 (545)
Q Consensus 443 ~~~~~~ 448 (545)
......
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 776543
No 177
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=119.59 Aligned_cols=77 Identities=26% Similarity=0.436 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 356899999999999999999999999997 666543 568999999999999999999999999999999999996
Q ss_pred CC
Q 009052 444 QG 445 (545)
Q Consensus 444 ~~ 445 (545)
.+
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 178
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=124.05 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=73.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|..||.|..+. ..++..++.++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP------IQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC------CEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE------EEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3568999999999999999999999999986654 4556668889999999999999999999 89999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 97 l~v~~a~~~~ 106 (115)
T 2cpx_A 97 LVIEFGKNKK 106 (115)
T ss_dssp CEEEECCCCS
T ss_pred EEEEEccCCC
Confidence 9999977554
No 179
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=3.6e-15 Score=116.01 Aligned_cols=85 Identities=47% Similarity=0.819 Sum_probs=73.1
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
..+.++|||+|||+++|+++|+++|++||.+.++.. .++..|..+.+..++|||||+|.+.++|.+|+.|||..|.|+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~-~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~ 81 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 81 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCS-SSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhccccc-CCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeE
Confidence 356789999999999999999999999976554321 2233588888999999999999999999999999999999999
Q ss_pred eEEeCC
Q 009052 322 VKVRRP 327 (545)
Q Consensus 322 l~v~~~ 327 (545)
|.|.+|
T Consensus 82 l~V~rp 87 (87)
T 2hzc_A 82 LKIRRP 87 (87)
T ss_dssp CEEECC
T ss_pred EEEeCC
Confidence 999864
No 180
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.1e-15 Score=122.49 Aligned_cols=74 Identities=22% Similarity=0.433 Sum_probs=69.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||+|||..+++++|+++|+.||.|..|.+... +|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.+
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 468999999999999999999999999999999843 89999999999999999999999999999999999854
No 181
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=7e-16 Score=122.76 Aligned_cols=80 Identities=16% Similarity=0.383 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIR----ELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 439 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v 439 (545)
+.++|||+|||..+++++|+ ++|++||.|..|.++. +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34689999999999999999 9999999999999874 4677899999999999999999999999999999999
Q ss_pred EEcCCCC
Q 009052 440 RRANQGA 446 (545)
Q Consensus 440 ~~a~~~~ 446 (545)
.|+....
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9996553
No 182
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.62 E-value=2.3e-16 Score=122.23 Aligned_cols=79 Identities=22% Similarity=0.348 Sum_probs=68.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+++++|+++|++||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ------IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEE------EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4678999999999999999999999999865543 2233345667999999999999999999 89999999999
Q ss_pred eEEeCC
Q 009052 322 VKVRRP 327 (545)
Q Consensus 322 l~v~~~ 327 (545)
|.|.++
T Consensus 79 l~v~~a 84 (85)
T 3mdf_A 79 IRVNLA 84 (85)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 999875
No 183
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.9e-16 Score=123.41 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=69.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEE---ecCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVY---INHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~---~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
.+.++|||+|||+++|+++|+++|+.||.|..+. ++.+.. ++.++|||||+|.+.++|.+|+ .|++..|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCT------ISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 3568999999999999999999999999876543 222222 3467899999999999999999 79999999
Q ss_pred CceeEEeCCCCCC
Q 009052 319 GAPVKVRRPSDYN 331 (545)
Q Consensus 319 g~~l~v~~~~~~~ 331 (545)
|+.|.|.++....
T Consensus 77 g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 77 GHKLEVRISERAT 89 (98)
T ss_dssp TEECEEECSSCSS
T ss_pred CeEEEEEEccCCC
Confidence 9999999976543
No 184
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=3.4e-15 Score=118.40 Aligned_cols=74 Identities=14% Similarity=0.288 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 364 GPDRIFVGGLPY-YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 364 ~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
..++|||+|||. .+++++|+++|+.||.|..|.|. +|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 346899999998 99999999999999999999983 789999999999999999999999999999999998
Q ss_pred CCC
Q 009052 443 NQG 445 (545)
Q Consensus 443 ~~~ 445 (545)
...
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 185
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=1.3e-16 Score=125.01 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=64.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHH--HhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVM--AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G--~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
.+|||+|||+++|+++|+++|+.|| .|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~------i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIK------FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEE------EEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEE------EEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 4799999999999999999999999 776553 3333346788999999999999999999 899999999999
Q ss_pred EEeCCCCC
Q 009052 323 KVRRPSDY 330 (545)
Q Consensus 323 ~v~~~~~~ 330 (545)
.|.++...
T Consensus 76 ~V~~~~~~ 83 (90)
T 3p5t_L 76 VVTPSNKL 83 (90)
T ss_dssp EECCC---
T ss_pred EEEECCCC
Confidence 99987654
No 186
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=2.9e-16 Score=121.01 Aligned_cols=79 Identities=19% Similarity=0.460 Sum_probs=67.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
.+|||+|||+.+++++|+++|+.||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 75 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGH------VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 75 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEE------EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 6899999999999999999999999875543 2222235667899999999999999999 79999999999999
Q ss_pred eCCCCC
Q 009052 325 RRPSDY 330 (545)
Q Consensus 325 ~~~~~~ 330 (545)
.++...
T Consensus 76 ~~a~~~ 81 (83)
T 3md1_A 76 NWAAKL 81 (83)
T ss_dssp EECCCC
T ss_pred EecCcC
Confidence 987643
No 187
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-16 Score=124.36 Aligned_cols=83 Identities=24% Similarity=0.316 Sum_probs=69.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELH------YPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEE------CCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE------EEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4678999999999999999999999999765443 1122224667899999999999999999 99999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 80 l~V~~a~~~~ 89 (99)
T 1whw_A 80 LHVLPSTIKK 89 (99)
T ss_dssp EEEEECCCCS
T ss_pred EEEEEcCCCc
Confidence 9999977654
No 188
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.4e-16 Score=123.67 Aligned_cols=83 Identities=18% Similarity=0.349 Sum_probs=71.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcC-CCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGG-NTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~-~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
.+.++|||+|||+.+|+++|+++|+.||.|..+ . ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPK------IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR 76 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCE------ECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE------EEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 357899999999999999999999999988665 3 2222245678999999999999999999 6999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 77 ~l~v~~a~~~~ 87 (96)
T 1x5t_A 77 PITVSYAFKKD 87 (96)
T ss_dssp ECEEEESCCCC
T ss_pred EEEEEEecccC
Confidence 99999876543
No 189
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.3e-16 Score=126.28 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=68.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCcee
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l 322 (545)
...++|||+|||+++|+++|.++|++||.|..+. ++.+ ..+.++|||||+|.+.++|.+|+.+++..|.|+.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~------i~~d-~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l 81 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ------MRRT-LHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL 81 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEE------EECC-CTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEE------EEEC-CCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEE
Confidence 4568999999999999999999999999876553 2222 22778999999999999999999999999999999
Q ss_pred EEeCCCC
Q 009052 323 KVRRPSD 329 (545)
Q Consensus 323 ~v~~~~~ 329 (545)
.|.++.+
T Consensus 82 ~V~~~~~ 88 (103)
T 1s79_A 82 LILFKDD 88 (103)
T ss_dssp EEEEHHH
T ss_pred EEEEchH
Confidence 9987654
No 190
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=3.4e-16 Score=118.04 Aligned_cols=75 Identities=17% Similarity=0.307 Sum_probs=66.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCceeEEeC
Q 009052 247 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRR 326 (545)
Q Consensus 247 ~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l~v~~ 326 (545)
+|||+|||+++|+++|+++|++||.|..+. .+.+..++.++|||||+|.+.++|++|+.+++..|.|+.|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAM------LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEEC------CCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 599999999999999999999999887665 23333467789999999999999999999999999999999987
Q ss_pred C
Q 009052 327 P 327 (545)
Q Consensus 327 ~ 327 (545)
+
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 4
No 191
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=3.6e-16 Score=128.67 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=85.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|+.||.|..+. -...+.++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~---------i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIR---------VGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE---------EECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE---------EeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3567999999999999999999999999764322 1123567899999999999999999 79999999999
Q ss_pred eEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC
Q 009052 322 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGP 391 (545)
Q Consensus 322 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 391 (545)
|.|.++..... ..+++...++++|.++|++||.
T Consensus 77 l~v~~a~~~~~-------------------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 77 LVVLYYNANRA-------------------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CEEEECCHHHH-------------------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEEecCChh-------------------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 99988643210 0567778899999999999985
No 192
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=1.4e-15 Score=122.88 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=66.8
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHH-HhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVM-AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G-~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
....++|||+|||+++|+++|+++|++|| .|.. +.+....++|||||+|.+.++|++|+ .|||..|.|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~----------v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTF----------SSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSE----------EECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEE----------EEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34568999999999999999999999999 6633 22223468999999999999999999 899999999
Q ss_pred ceeEEeCCCC
Q 009052 320 APVKVRRPSD 329 (545)
Q Consensus 320 ~~l~v~~~~~ 329 (545)
+.|.|.++..
T Consensus 95 r~i~V~~a~~ 104 (111)
T 2jvr_A 95 SVITVERDDN 104 (111)
T ss_dssp EEEEEEESCC
T ss_pred eEEEEEECCC
Confidence 9999988653
No 193
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=121.36 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=69.4
Q ss_pred CCCeEEE--cCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCcc-----CCeE
Q 009052 364 GPDRIFV--GGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM-----GDKT 436 (545)
Q Consensus 364 ~~~~l~v--~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~-----~g~~ 436 (545)
+..+||| +||+..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|||..| .|+.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 3568999 779999999999999999999999988643 78999999999999999999999988 7899
Q ss_pred EEEEEcCCCC
Q 009052 437 LTVRRANQGA 446 (545)
Q Consensus 437 l~v~~a~~~~ 446 (545)
|.|.|+..-.
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999996543
No 194
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.61 E-value=3.5e-16 Score=124.15 Aligned_cols=82 Identities=24% Similarity=0.409 Sum_probs=69.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
+.++|||+|||+.+++++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|+|..|.|+.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 74 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLK------MMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFL 74 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------CCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEE------EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 467999999999999999999999999765443 1222224567899999999999999999 899999999999
Q ss_pred EEeCCCCCC
Q 009052 323 KVRRPSDYN 331 (545)
Q Consensus 323 ~v~~~~~~~ 331 (545)
.|.++....
T Consensus 75 ~V~~a~~~~ 83 (96)
T 2x1f_A 75 KCGYSSNSD 83 (96)
T ss_dssp EEEECSCSS
T ss_pred EEEEcCCCC
Confidence 999977654
No 195
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=118.91 Aligned_cols=77 Identities=26% Similarity=0.403 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCC-ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCC-CccCCeEEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGP-LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG-IKMGDKTLTVRR 441 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g-~~~~g~~l~v~~ 441 (545)
..++|||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|+|+.|.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 3468999999999999999999999999 6666653 378999999999999999999999 999999999999
Q ss_pred cCCCCC
Q 009052 442 ANQGAN 447 (545)
Q Consensus 442 a~~~~~ 447 (545)
+..+..
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 976653
No 196
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-14 Score=118.37 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=73.2
Q ss_pred hhhhhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCc
Q 009052 237 MTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGI 315 (545)
Q Consensus 237 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~ 315 (545)
.........++|||+|||+.+|+++|+++|+.||. |..+.+...+|||||+|.+.++|.+|+ .|+|.
T Consensus 17 ~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~ 84 (109)
T 1x4g_A 17 VVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ------------IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 84 (109)
T ss_dssp HHHHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 33445667899999999999999999999999995 666667777999999999999999999 89999
Q ss_pred eecCceeEEeCCCCCC
Q 009052 316 IFEGAPVKVRRPSDYN 331 (545)
Q Consensus 316 ~~~g~~l~v~~~~~~~ 331 (545)
.|.|+.|.|.++....
T Consensus 85 ~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 85 TIEGHVVKCYWGKESP 100 (109)
T ss_dssp EETTEECEEECCCCCC
T ss_pred EECCcEEEEEecCCCC
Confidence 9999999999987654
No 197
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.60 E-value=2.1e-16 Score=132.35 Aligned_cols=83 Identities=20% Similarity=0.245 Sum_probs=70.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|++|+ .|||..|.|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVS------IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEE------EECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34678999999999999999999999999865443 2222234678999999999999999999 7999999999
Q ss_pred eeEEeCCCCC
Q 009052 321 PVKVRRPSDY 330 (545)
Q Consensus 321 ~l~v~~~~~~ 330 (545)
.|.|.++...
T Consensus 117 ~l~V~~a~~~ 126 (129)
T 2kxn_B 117 RIRVDFSITK 126 (129)
T ss_dssp CCEESCCSSS
T ss_pred EEEEEEecCC
Confidence 9999987653
No 198
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.9e-16 Score=122.66 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=69.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
+.++|||+|||+.+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIV------LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------EECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE------EeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 568999999999999999999999999865543 2222234667899999999999999999 799999999999
Q ss_pred EEeCCCCCC
Q 009052 323 KVRRPSDYN 331 (545)
Q Consensus 323 ~v~~~~~~~ 331 (545)
.|.++....
T Consensus 78 ~V~~a~~~~ 86 (95)
T 2dnz_A 78 RVGHVTERL 86 (95)
T ss_dssp EEEESSCCC
T ss_pred EEEEccccc
Confidence 999876544
No 199
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=4.5e-16 Score=134.65 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=68.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHH--HhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVM--AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G--~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
...++|||+|||+++|+++|+++|+.|| .|..+. ++.+..++.++|||||+|.+.++|.+|| .|||..|.|
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~------i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G 126 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELK------FAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG 126 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEE------EEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3568999999999999999999999999 766554 3333346778999999999999999999 899999999
Q ss_pred ceeEEeCCCC
Q 009052 320 APVKVRRPSD 329 (545)
Q Consensus 320 ~~l~v~~~~~ 329 (545)
+.|.|.++..
T Consensus 127 r~l~V~~a~~ 136 (156)
T 3n9u_C 127 EKVDVRPATR 136 (156)
T ss_dssp EECEEEECCH
T ss_pred eEeEEEEcCC
Confidence 9999998653
No 200
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.6e-15 Score=121.55 Aligned_cols=77 Identities=21% Similarity=0.359 Sum_probs=68.2
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
.....++|||+|||.++|+++|+++|+.||.| ..+.+..++|||||+|.+.++|.+|+ .|||..|.|
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i------------~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 90 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFI------------LDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQG 90 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCC------------SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCE------------EEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 34457899999999999999999999999964 44455588999999999999999999 899999999
Q ss_pred ceeEEeCCCC
Q 009052 320 APVKVRRPSD 329 (545)
Q Consensus 320 ~~l~v~~~~~ 329 (545)
+.|.|.++..
T Consensus 91 ~~l~V~~a~~ 100 (101)
T 2la4_A 91 RNLRTGWGKE 100 (101)
T ss_dssp EECCCCBCCC
T ss_pred eEEEEEeccC
Confidence 9999998753
No 201
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.60 E-value=7.7e-16 Score=126.71 Aligned_cols=85 Identities=20% Similarity=0.348 Sum_probs=71.2
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+|| .|++..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR------VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34678999999999999999999999999875543 2222235566899999999999999999 8999999999
Q ss_pred eeEEeCCCCCCC
Q 009052 321 PVKVRRPSDYNP 332 (545)
Q Consensus 321 ~l~v~~~~~~~~ 332 (545)
.|.|.++.....
T Consensus 86 ~l~V~~a~~~~~ 97 (115)
T 2dgo_A 86 QIRTNWATRKPP 97 (115)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999876543
No 202
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.2e-16 Score=122.99 Aligned_cols=80 Identities=24% Similarity=0.319 Sum_probs=68.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVS------IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEE------EEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEE------EEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4578999999999999999999999999865443 2222234667899999999999999999 79999999999
Q ss_pred eEEeCCC
Q 009052 322 VKVRRPS 328 (545)
Q Consensus 322 l~v~~~~ 328 (545)
|.|.+++
T Consensus 87 l~v~~a~ 93 (95)
T 2cqc_A 87 IRVSGPS 93 (95)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9999865
No 203
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=120.79 Aligned_cols=78 Identities=15% Similarity=0.330 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 34689999999999999999999999988766 2478889999999999999999999999999999999999996
Q ss_pred CCC
Q 009052 444 QGA 446 (545)
Q Consensus 444 ~~~ 446 (545)
++.
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 204
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=3e-16 Score=122.13 Aligned_cols=81 Identities=11% Similarity=0.333 Sum_probs=68.2
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCc
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 320 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~ 320 (545)
...+.++|||+|||+.+|+++|+++|++||.|..+. .+.+..++.++|||||+|.+.++|.+|+.+++..|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~ 80 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT------IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGR 80 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEE------EEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCE
Confidence 345678999999999999999999999999876543 22222346678999999999999999998899999999
Q ss_pred eeEEeCC
Q 009052 321 PVKVRRP 327 (545)
Q Consensus 321 ~l~v~~~ 327 (545)
.|.|.++
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999763
No 205
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.60 E-value=3e-16 Score=122.12 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=66.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|+.||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDAR------VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 77 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3567999999999999999999999999875543 2222235567899999999999999999 79999999999
Q ss_pred eEEeCCCC
Q 009052 322 VKVRRPSD 329 (545)
Q Consensus 322 l~v~~~~~ 329 (545)
|.|.++..
T Consensus 78 l~v~~a~~ 85 (87)
T 3bs9_A 78 IRTNWATR 85 (87)
T ss_dssp CEEEEEC-
T ss_pred EEEEecCC
Confidence 99998653
No 206
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=125.03 Aligned_cols=82 Identities=21% Similarity=0.402 Sum_probs=70.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
...++|||+|||+.+|+++|+++|+.||.|..+. +....++.++|||||+|.+.++|++|+ .|||..|.|+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL-------LIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEE-------EECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE-------EEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4568999999999999999999999999876543 222225678899999999999999999 89999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 78 l~V~~a~~~~ 87 (116)
T 2fy1_A 78 IKVEQAKKPS 87 (116)
T ss_dssp CEEEECCCSS
T ss_pred EEEEECCCCC
Confidence 9999987544
No 207
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.3e-16 Score=123.51 Aligned_cols=83 Identities=18% Similarity=0.329 Sum_probs=70.4
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhh-cCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAI-GGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~-~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
..+.++|||+|||+.+|+++|+++|++||.|. .+. ++.+..++.++|||||+|.+.++|++|+ .|||..|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVK------IIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG 79 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEE------EEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE------EeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 34678999999999999999999999999876 543 2333345677899999999999999999 799999999
Q ss_pred ce----eEEeCCCCC
Q 009052 320 AP----VKVRRPSDY 330 (545)
Q Consensus 320 ~~----l~v~~~~~~ 330 (545)
+. |+|.++...
T Consensus 80 ~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 80 ATPAKRFKLNYATYS 94 (99)
T ss_dssp CSSCEECCEEETTCC
T ss_pred CCcceeEEEeecCCC
Confidence 99 999887644
No 208
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=1.3e-14 Score=118.16 Aligned_cols=74 Identities=24% Similarity=0.480 Sum_probs=69.1
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 365 PDRIFVGGLPYY-FTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 365 ~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
.++|||+|||.. +++++|+++|++||.|..|.| ++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 368999999999 999999999999999999998 37899999999999999999999999999999999996
Q ss_pred CCC
Q 009052 444 QGA 446 (545)
Q Consensus 444 ~~~ 446 (545)
...
T Consensus 99 ~~~ 101 (110)
T 1wf1_A 99 EPK 101 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 209
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=113.73 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=64.7
Q ss_pred Ce-EEEcCCCCCCCHHH----HHHHHHhcC-CccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEE
Q 009052 366 DR-IFVGGLPYYFTEAQ----IRELLESFG-PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 439 (545)
Q Consensus 366 ~~-l~v~nlp~~~~~~~----l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v 439 (545)
.+ |||+|||..+++++ |+++|++|| +|.+| ++ |+|||+|.+.++|.+|++.|+|..|.|+.|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 45 99999999999987 558999995 99988 23 99999999999999999999999999999999
Q ss_pred EEcCCCCC
Q 009052 440 RRANQGAN 447 (545)
Q Consensus 440 ~~a~~~~~ 447 (545)
.||.....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99976654
No 210
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.7e-16 Score=125.26 Aligned_cols=83 Identities=28% Similarity=0.421 Sum_probs=70.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTH------MPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEE------CCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 4568999999999999999999999999865543 2222235667899999999999999999 79999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 87 l~v~~a~~~~ 96 (105)
T 1x5u_A 87 IRVNKASAHN 96 (105)
T ss_dssp CEEEETTTTS
T ss_pred EEEEECCCCC
Confidence 9999876543
No 211
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.8e-16 Score=123.72 Aligned_cols=83 Identities=25% Similarity=0.441 Sum_probs=69.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+++|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVV------VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEE------ECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE------EEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4578999999999999999999999999875543 1222234567899999999999999999 99999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 84 l~v~~a~~~~ 93 (102)
T 1x5s_A 84 IRVDQAGKSS 93 (102)
T ss_dssp CEEEEEECCC
T ss_pred EEEEECCCCC
Confidence 9999876543
No 212
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.5e-16 Score=124.18 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=71.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ------IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEE------CCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4678999999999999999999999999876554 2233345678999999999999999999 89999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2cqb_A 84 IRVNLAKPMR 93 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999876544
No 213
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=5.9e-15 Score=118.18 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHHHHhcCCccEEEEeecCC-CCCcceEEEEEecChHHHHHHHHHhCCCccCCeEE
Q 009052 364 GPDRIFVGGLPY-----YFTEAQIRELLESFGPLRGFDLVKDRE-TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 437 (545)
Q Consensus 364 ~~~~l~v~nlp~-----~~~~~~l~~~f~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l 437 (545)
++++|+|.||.. .-++++|+++|++||.|..|.|+.++. ++.++|+|||+|.+.++|.+|+..|||..|+|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 346899999963 236899999999999999999998864 36889999999999999999999999999999999
Q ss_pred EEEEcC
Q 009052 438 TVRRAN 443 (545)
Q Consensus 438 ~v~~a~ 443 (545)
.|.|+.
T Consensus 87 ~v~~a~ 92 (105)
T 2pe8_A 87 KACFYN 92 (105)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999983
No 214
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.4e-15 Score=120.27 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=66.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCC--ceecC
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDG--IIFEG 319 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g--~~~~g 319 (545)
.+.++|||+|||+.+|+++|+++|++||. |..+.+...+|||||+|.+.++|.+|+ .|++ ..|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGT------------ICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 35689999999999999999999999996 555666678999999999999999999 6765 45999
Q ss_pred ceeEEeCCCCCC
Q 009052 320 APVKVRRPSDYN 331 (545)
Q Consensus 320 ~~l~v~~~~~~~ 331 (545)
++|.|.++....
T Consensus 81 r~l~V~~a~~~~ 92 (104)
T 1wex_A 81 QQAFFNYSTSKR 92 (104)
T ss_dssp SBCEEEECSSSS
T ss_pred EEEEEEEccCcc
Confidence 999999986543
No 215
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.7e-16 Score=124.23 Aligned_cols=83 Identities=16% Similarity=0.350 Sum_probs=69.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCcee
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l 322 (545)
.+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+.|++..|.|+.|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l 81 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVV------MIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKV 81 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEE------ECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEE
Confidence 4678999999999999999999999999764432 1111124567899999999999999999999999999999
Q ss_pred EEeCCCCCC
Q 009052 323 KVRRPSDYN 331 (545)
Q Consensus 323 ~v~~~~~~~ 331 (545)
.|.++....
T Consensus 82 ~V~~a~~~~ 90 (99)
T 2dgs_A 82 EVKRAEPRD 90 (99)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCc
Confidence 999876543
No 216
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.59 E-value=3.7e-16 Score=126.60 Aligned_cols=83 Identities=22% Similarity=0.347 Sum_probs=69.9
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|+|..|.|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQ------LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEE------EEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 44678999999999999999999999999876543 2222234567899999999999999999 8999999999
Q ss_pred eeEEeCCCCC
Q 009052 321 PVKVRRPSDY 330 (545)
Q Consensus 321 ~l~v~~~~~~ 330 (545)
.|.|.++...
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 9999987643
No 217
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.59 E-value=5.5e-16 Score=121.24 Aligned_cols=81 Identities=25% Similarity=0.418 Sum_probs=69.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCcee
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l 322 (545)
...++|||+|||+.+|+++|+++|+.||.|..+. .+.+..++.++|||||+|.+.++|.+|+.|++..|.|+.|
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l 77 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVT------ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 77 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEE------EEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEEC
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEE
Confidence 3568999999999999999999999999876543 2223346678999999999999999999999999999999
Q ss_pred EEeCCCC
Q 009052 323 KVRRPSD 329 (545)
Q Consensus 323 ~v~~~~~ 329 (545)
.|.++..
T Consensus 78 ~V~~a~~ 84 (89)
T 3ucg_A 78 KVIPKRT 84 (89)
T ss_dssp EEEETTT
T ss_pred EEEEccC
Confidence 9998754
No 218
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=6.3e-16 Score=127.88 Aligned_cols=80 Identities=19% Similarity=0.291 Sum_probs=68.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+++|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAK------VFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEE------ECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 45678999999999999999999999999865443 1222234677999999999999999999 8999999999
Q ss_pred eeEEeCC
Q 009052 321 PVKVRRP 327 (545)
Q Consensus 321 ~l~v~~~ 327 (545)
.|+|.++
T Consensus 111 ~l~V~~a 117 (118)
T 2khc_A 111 RLKVQLK 117 (118)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 9999875
No 219
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=124.37 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=71.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCc----cEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEE
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPL----RGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 440 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i----~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~ 440 (545)
..+|||+|||+.+++++|+++|++||.| ..|.|+.+ .+|.++|||||+|.+.++|.+||.. |+..|+|+.|.|.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 4689999999999999999999999975 68999998 5899999999999999999999975 9999999999999
Q ss_pred Ec
Q 009052 441 RA 442 (545)
Q Consensus 441 ~a 442 (545)
.+
T Consensus 101 ~a 102 (123)
T 2dha_A 101 RS 102 (123)
T ss_dssp EE
T ss_pred EC
Confidence 88
No 220
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=1.7e-15 Score=126.49 Aligned_cols=85 Identities=22% Similarity=0.353 Sum_probs=72.3
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCc
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 320 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~ 320 (545)
.....++|||+|||+++|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+.|+|..|.|+
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 105 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRIT------ILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGR 105 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEE------EEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 445678999999999999999999999999876553 23333467789999999999999999999999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 106 ~l~V~~a~~~~ 116 (124)
T 2jwn_A 106 TIKVLPKRTNM 116 (124)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999876543
No 221
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.4e-15 Score=117.28 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=70.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEE-EEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGF-DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
.++|||+|||..+++++|+++|+.||.|..| .|+.++. .|.|||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~----~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE----TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS----SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4689999999999999999999999999999 5877754 3449999999999999999999999999999999997
Q ss_pred CCC
Q 009052 444 QGA 446 (545)
Q Consensus 444 ~~~ 446 (545)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 663
No 222
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.8e-16 Score=125.05 Aligned_cols=83 Identities=19% Similarity=0.370 Sum_probs=69.6
Q ss_pred hhhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCcee
Q 009052 239 QQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF 317 (545)
Q Consensus 239 ~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~ 317 (545)
.......++|||+|||+.+|+++|+++|++||.|..+. +. ...+.++|||||+|.+.++|.+|+ .|+|..|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~-------i~-~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~ 94 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE-------II-FNERGSKGFGFVTFENSADADRAREKLHGTVV 94 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEE-------EC-CBTTBCTTEEEEECCCSHHHHHHHHHHTTCEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEE-------EE-ECCCCCceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34456788999999999999999999999999876543 11 112347899999999999999999 7999999
Q ss_pred cCceeEEeCCCC
Q 009052 318 EGAPVKVRRPSD 329 (545)
Q Consensus 318 ~g~~l~v~~~~~ 329 (545)
.|+.|.|.++..
T Consensus 95 ~g~~l~V~~a~~ 106 (109)
T 2err_A 95 EGRKIEVNNATA 106 (109)
T ss_dssp TTEECEEEECCC
T ss_pred CCEEEEEEECCC
Confidence 999999998754
No 223
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.59 E-value=1.4e-15 Score=123.18 Aligned_cols=84 Identities=18% Similarity=0.286 Sum_probs=70.9
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCcee---
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF--- 317 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~--- 317 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT------VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEE------CCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 34578999999999999999999999999876554 2233335778999999999999999999 8999987
Q ss_pred cCceeEEeCCCCCC
Q 009052 318 EGAPVKVRRPSDYN 331 (545)
Q Consensus 318 ~g~~l~v~~~~~~~ 331 (545)
.|+.|.|.++....
T Consensus 84 ~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 84 MNRPIQVKPADSES 97 (106)
T ss_dssp CSSCCEEEECCCCS
T ss_pred CCceEEEEECCccc
Confidence 89999999876543
No 224
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=5.9e-16 Score=125.73 Aligned_cols=86 Identities=10% Similarity=0.208 Sum_probs=66.2
Q ss_pred hhhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceec
Q 009052 239 QQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFE 318 (545)
Q Consensus 239 ~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~ 318 (545)
.....+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+...+..|.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~------i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~ 92 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECL------VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELD 92 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEE------ECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEET
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEE------EEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCC
Confidence 34456788999999999999999999999999865443 122223467799999999999999999965679999
Q ss_pred CceeEEeCCCCC
Q 009052 319 GAPVKVRRPSDY 330 (545)
Q Consensus 319 g~~l~v~~~~~~ 330 (545)
|+.|.|.++...
T Consensus 93 g~~l~V~~a~~~ 104 (109)
T 2rs2_A 93 SKTIDPKVAFPR 104 (109)
T ss_dssp TEEEEEEECCCC
T ss_pred CEEEEEEEccCC
Confidence 999999987644
No 225
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=8e-16 Score=121.91 Aligned_cols=81 Identities=28% Similarity=0.410 Sum_probs=68.3
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
...+.++|||+|||+.+++++|+++|+.||.|..+. +.....+.++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVT-------ICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEE-------EEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEE-------EEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345678999999999999999999999999865543 222223566899999999999999999 799999999
Q ss_pred ceeEEeCCC
Q 009052 320 APVKVRRPS 328 (545)
Q Consensus 320 ~~l~v~~~~ 328 (545)
+.|.|.++.
T Consensus 85 ~~l~V~~a~ 93 (95)
T 2ywk_A 85 RPINVSGPS 93 (95)
T ss_dssp EECEEECCC
T ss_pred CEEEEEEcC
Confidence 999999865
No 226
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=5.7e-15 Score=121.58 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=69.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceE-EEEEecChHHHHHHHHHhCCCccCC--eEEEEEEcC
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGY-AFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRAN 443 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~e~A~~A~~~l~g~~~~g--~~l~v~~a~ 443 (545)
.|||+||++.+++++|+++|++||.|..|.|.... +|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|+.
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 58899999999999999999999999999987652 677 9999999999999999999999988 999999996
Q ss_pred CCC
Q 009052 444 QGA 446 (545)
Q Consensus 444 ~~~ 446 (545)
...
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 654
No 227
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=9.3e-16 Score=121.53 Aligned_cols=79 Identities=22% Similarity=0.205 Sum_probs=69.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
..++|||+|||+++|+++|+++|.+||.|..+. .+.+...+.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSV------CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCC------EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceE------EEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 458999999999999999999999999987664 4555556778999999999999999999 799999999999
Q ss_pred EEeCCC
Q 009052 323 KVRRPS 328 (545)
Q Consensus 323 ~v~~~~ 328 (545)
.|.++.
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 998764
No 228
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4e-16 Score=125.63 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=69.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVY------IPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------CCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 4578999999999999999999999999765443 1222234667899999999999999999 79999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dnm_A 85 LRVQVARYGR 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEECCcCC
Confidence 9999976543
No 229
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=9e-16 Score=121.70 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=67.9
Q ss_pred cccceEEEcCCCC-CCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCC--ceec
Q 009052 243 RHARRVYVGGLPP-TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDG--IIFE 318 (545)
Q Consensus 243 ~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g--~~~~ 318 (545)
.+.++|||+|||+ ++|+++|+++|++||. |.++.+..++|||||+|.+.++|..|+ .|++ ..|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGV------------ISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSC------------EEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 3678999999999 9999999999999995 666777778999999999999999999 7775 4599
Q ss_pred CceeEEeCCCCCC
Q 009052 319 GAPVKVRRPSDYN 331 (545)
Q Consensus 319 g~~l~v~~~~~~~ 331 (545)
|++|.|.++....
T Consensus 81 Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 81 GKPVRVHLSQKYK 93 (102)
T ss_dssp TEECEEEEECCCT
T ss_pred CcEEEEEECCCCC
Confidence 9999999987543
No 230
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-15 Score=124.81 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=70.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcC------C
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD------G 314 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~------g 314 (545)
..+.++|||+|||+.+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+|| .|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVR------VVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE------CCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 34678999999999999999999999999765543 2223334677999999999999999999 899 9
Q ss_pred ceecCceeEEeCCCCCC
Q 009052 315 IIFEGAPVKVRRPSDYN 331 (545)
Q Consensus 315 ~~~~g~~l~v~~~~~~~ 331 (545)
..|.|+.|.|.++....
T Consensus 86 ~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp EESSSCEEEEECCCCCC
T ss_pred cEEcCEEEEEEECCCCc
Confidence 99999999999976543
No 231
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3e-15 Score=118.84 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=67.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-Hc--CCceecC
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-AL--DGIIFEG 319 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l--~g~~~~g 319 (545)
.+.++|||+|||+.+|+++|+++|++||. |..+.+...+|||||+|.+.++|.+|+ .| ++..|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~------------v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGK------------VTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 45689999999999999999999999996 556666677999999999999999999 55 5788999
Q ss_pred ceeEEeCCCCCC
Q 009052 320 APVKVRRPSDYN 331 (545)
Q Consensus 320 ~~l~v~~~~~~~ 331 (545)
++|.|.++....
T Consensus 81 r~l~V~~a~~~~ 92 (101)
T 2cq1_A 81 QPIYIQYSNHKE 92 (101)
T ss_dssp EECEEEECSCSS
T ss_pred cEEEEEEcCccc
Confidence 999999976543
No 232
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=124.74 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=67.7
Q ss_pred cccceEEEcCCCCCCCHHHHH----HHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCcee
Q 009052 243 RHARRVYVGGLPPTANEQSVA----TFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF 317 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~ 317 (545)
.+.++|||+|||+.+++++|+ ++|++||.|..+ ....++.++|||||+|.+.++|..|+ .|||..|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v---------~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDI---------VVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEE---------EECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEE---------EeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 456899999999999999876 799999986432 11234678999999999999999999 9999999
Q ss_pred cCceeEEeCCCCCC
Q 009052 318 EGAPVKVRRPSDYN 331 (545)
Q Consensus 318 ~g~~l~v~~~~~~~ 331 (545)
.|++|.|.++....
T Consensus 98 ~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 98 QGNPLVITFSETPQ 111 (127)
T ss_dssp TTSCCEEEECCCCC
T ss_pred CCCEEEEEEccCcc
Confidence 99999999987543
No 233
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.5e-16 Score=123.10 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=66.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+++++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVT------IMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEE------ECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE------EEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3567999999999999999999999999764432 1112223567899999999999999999 89999999999
Q ss_pred eEEeCCC
Q 009052 322 VKVRRPS 328 (545)
Q Consensus 322 l~v~~~~ 328 (545)
|.|.+++
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9998753
No 234
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=6.8e-16 Score=130.02 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=73.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
..+|||+|||+.+++++|+++|++|| |+.|.|+.++. |.++|||||+|.+.++|.+|| .||+..|+|+.|.|.++..
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 46899999999999999999999999 77999999965 999999999999999999999 8899999999999999865
Q ss_pred CC
Q 009052 445 GA 446 (545)
Q Consensus 445 ~~ 446 (545)
..
T Consensus 123 ~~ 124 (139)
T 2hgn_A 123 TG 124 (139)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 235
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=119.19 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=68.1
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
...++|||+|||+.+|+++|+++|+.||.|. +.+.++.++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-----------~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-----------LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-----------SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-----------EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4567999999999999999999999999862 23445789999999999999999999 89999999999
Q ss_pred eEEeCCCCC
Q 009052 322 VKVRRPSDY 330 (545)
Q Consensus 322 l~v~~~~~~ 330 (545)
|.|.++...
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999987643
No 236
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-15 Score=121.60 Aligned_cols=80 Identities=20% Similarity=0.151 Sum_probs=71.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
..++|||+|||+.+|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|++|+ .||+..|.|+.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSV------CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTC------EEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceE------EEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 467999999999999999999999999987665 4555567788999999999999999999 999999999999
Q ss_pred EEeCCCC
Q 009052 323 KVRRPSD 329 (545)
Q Consensus 323 ~v~~~~~ 329 (545)
.|.++..
T Consensus 88 ~V~~a~~ 94 (98)
T 2cqp_A 88 KLVLGSG 94 (98)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 9998653
No 237
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-16 Score=131.67 Aligned_cols=82 Identities=27% Similarity=0.399 Sum_probs=77.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccE--------EEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeE
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRG--------FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKT 436 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~ 436 (545)
.++|||+|||..+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 358999999999999999999999999998 899998888999999999999999999999999999999999
Q ss_pred EEEEEcCCCC
Q 009052 437 LTVRRANQGA 446 (545)
Q Consensus 437 l~v~~a~~~~ 446 (545)
|.|.|+..+.
T Consensus 87 l~V~~a~~~~ 96 (116)
T 2lcw_A 87 IKVSFATRRA 96 (116)
Confidence 9999996554
No 238
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=2.8e-16 Score=125.52 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=69.5
Q ss_pred ccceEEEcCCCC------CCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009052 244 HARRVYVGGLPP------TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII 316 (545)
Q Consensus 244 ~~~~l~V~nLp~------~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~ 316 (545)
..++|||+|||+ ++++++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~------i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNME------FPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR 78 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEE------CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEE------EEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc
Confidence 467999999999 999999999999999876654 3444455788999999999999999999 899999
Q ss_pred ecC-ceeEEeCCC
Q 009052 317 FEG-APVKVRRPS 328 (545)
Q Consensus 317 ~~g-~~l~v~~~~ 328 (545)
|.| +.|.|.++.
T Consensus 79 ~~g~r~l~V~~a~ 91 (100)
T 3ns6_A 79 LDLKHRLFLYTMK 91 (100)
T ss_dssp SSSSCBCEEEESH
T ss_pred cCCCeEEEEEECc
Confidence 999 999998764
No 239
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.58 E-value=4.8e-15 Score=117.52 Aligned_cols=75 Identities=16% Similarity=0.336 Sum_probs=65.6
Q ss_pred hccccceEEEcCCCC-CCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 241 ATRHARRVYVGGLPP-TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
...+.++|||+|||+ .+++++|+++|+.||.| ..+.+ .+|||||+|.+.++|.+|+ .|||..|.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v------------~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHI------------MQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCE------------EEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCE------------EEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 445678999999998 99999999999999964 44444 4899999999999999999 79999999
Q ss_pred CceeEEeCCCC
Q 009052 319 GAPVKVRRPSD 329 (545)
Q Consensus 319 g~~l~v~~~~~ 329 (545)
|+.|.|.++..
T Consensus 84 g~~l~V~~a~~ 94 (97)
T 2xnq_A 84 GKKLILEVSSS 94 (97)
T ss_dssp TEECEEEECCC
T ss_pred CEEEEEEecCC
Confidence 99999998654
No 240
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.9e-15 Score=118.70 Aligned_cols=76 Identities=14% Similarity=0.305 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 364 GPDRIFVGGLPY-YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 364 ~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
+.++|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 346899999998 99999999999999999999984 689999999999999999999999999999999999
Q ss_pred CCCCC
Q 009052 443 NQGAN 447 (545)
Q Consensus 443 ~~~~~ 447 (545)
.....
T Consensus 81 ~~~~~ 85 (96)
T 2kvi_A 81 SSNAR 85 (96)
T ss_dssp ECCCC
T ss_pred CcCCC
Confidence 66543
No 241
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.8e-16 Score=125.91 Aligned_cols=85 Identities=22% Similarity=0.228 Sum_probs=71.2
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhc--------CCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-H
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIG--------GNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-A 311 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--------~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~ 311 (545)
...+.++|||+|||+.+|+++|+++|+.||.|.. +. ++.+..++.++|||||+|.+.++|.+|| .
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 84 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIH------IYLDKETGKPKGDATVSYEDPPTAKAAVEW 84 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEE------CCBCTTTCSBCSEEEEEBSSHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEE------EEEeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 3456789999999999999999999999998762 22 2222245677999999999999999999 7
Q ss_pred cCCceecCceeEEeCCCCCC
Q 009052 312 LDGIIFEGAPVKVRRPSDYN 331 (545)
Q Consensus 312 l~g~~~~g~~l~v~~~~~~~ 331 (545)
||+..|.|+.|.|.++....
T Consensus 85 l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 85 FDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp HTTCEETTEECEEECSSCCC
T ss_pred cCCCccCCCEEEEEECCCCC
Confidence 99999999999999977654
No 242
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.58 E-value=4.2e-16 Score=124.51 Aligned_cols=79 Identities=27% Similarity=0.299 Sum_probs=66.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhc--------CCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcC
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIG--------GNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD 313 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--------~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~ 313 (545)
.+.++|||+|||+++|+++|+++|+.||.|.. +. ++.+..++.++|||||+|.+.++|.+|+ .||
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~------i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMIN------LYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEE------EEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEE------EEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 35679999999999999999999999998754 22 1222234667899999999999999999 799
Q ss_pred CceecCceeEEeCC
Q 009052 314 GIIFEGAPVKVRRP 327 (545)
Q Consensus 314 g~~~~g~~l~v~~~ 327 (545)
|..|.|+.|.|.++
T Consensus 85 g~~~~g~~l~V~~A 98 (99)
T 2la6_A 85 GKEFSGNPIKVSFA 98 (99)
T ss_dssp TCBSSSSBCEEEEC
T ss_pred CCEeCCcEEEEEec
Confidence 99999999999875
No 243
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=1e-15 Score=119.39 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=66.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecC-CCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
..++|||+|||+++|+++|+++|++||.|..+. .+.+..++. ++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~------i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMID------MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEE------CCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 467999999999999999999999999765433 122222223 7999999999999999999 79999999999
Q ss_pred eEEeCCCC
Q 009052 322 VKVRRPSD 329 (545)
Q Consensus 322 l~v~~~~~ 329 (545)
|.|.++..
T Consensus 77 l~v~~a~~ 84 (88)
T 4a8x_A 77 ITATAVLA 84 (88)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 99987643
No 244
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.9e-16 Score=125.90 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=68.8
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIH------LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEE------EEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 34568999999999999999999999999865443 2222234667899999999999999999 7999999999
Q ss_pred eeEEeCCCC
Q 009052 321 PVKVRRPSD 329 (545)
Q Consensus 321 ~l~v~~~~~ 329 (545)
.|.|.++..
T Consensus 94 ~l~V~~a~~ 102 (106)
T 1p27_B 94 PISVDWCFV 102 (106)
T ss_dssp BCEEEESEE
T ss_pred EEEEEeecC
Confidence 999998654
No 245
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=129.83 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEE--E---eecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFD--L---VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 438 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~--i---~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~ 438 (545)
+.++|||+|||..+++++|+++|+.||.|..+. + +....+|.++|||||+|.+.++|.+||..|||..|.|+.|.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 346899999999999999999999999998741 0 11113688899999999999999999999999999999999
Q ss_pred EEEcCCCC
Q 009052 439 VRRANQGA 446 (545)
Q Consensus 439 v~~a~~~~ 446 (545)
|.|+....
T Consensus 124 V~~a~~~~ 131 (143)
T 3egn_A 124 VQFARSAR 131 (143)
T ss_dssp EEECCCSC
T ss_pred EEECCCCC
Confidence 99996654
No 246
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.9e-15 Score=123.02 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=66.6
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcC--Cceec
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD--GIIFE 318 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~--g~~~~ 318 (545)
..+.++|||+|||+++|+++|+++|++||.| .++.+...+|||||+|.+.++|.+|+ .|+ +..|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V------------~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~ 95 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKV------------TNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLR 95 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCC------------CEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE------------EEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 3467899999999999999999999999975 34444456999999999999999999 676 46899
Q ss_pred CceeEEeCCCCCC
Q 009052 319 GAPVKVRRPSDYN 331 (545)
Q Consensus 319 g~~l~v~~~~~~~ 331 (545)
|++|.|.++....
T Consensus 96 Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 96 GQPIYIQFSNHKE 108 (119)
T ss_dssp TBCCEEEECSSSS
T ss_pred CeEEEEEEccCCC
Confidence 9999999976544
No 247
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-15 Score=123.67 Aligned_cols=84 Identities=17% Similarity=0.238 Sum_probs=70.1
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEE-EEecCCCcEEEEEecCHHHHHHHH-Hc-CCceec
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVN-VYINHEKKFAFVEMRSVEEASNAM-AL-DGIIFE 318 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~-~~~~~~~g~afV~F~~~~~A~~a~-~l-~g~~~~ 318 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+ ...+.++|||||+|.+.++|.+|+ .| |+..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVR------LPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE------CCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEE------EecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 34678999999999999999999999999865543 1112 224566899999999999999999 88 999999
Q ss_pred CceeEEeCCCCCC
Q 009052 319 GAPVKVRRPSDYN 331 (545)
Q Consensus 319 g~~l~v~~~~~~~ 331 (545)
|+.|.|.++....
T Consensus 86 g~~l~v~~a~~~~ 98 (107)
T 2cph_A 86 GRRLVLEWADSEV 98 (107)
T ss_dssp SCBCEEEECCCCC
T ss_pred CCEEEEEeCCCCC
Confidence 9999999976554
No 248
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=9e-16 Score=115.70 Aligned_cols=75 Identities=16% Similarity=0.310 Sum_probs=65.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCceeEEeC
Q 009052 247 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRR 326 (545)
Q Consensus 247 ~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l~v~~ 326 (545)
+|||+|||+++|+++|+++|++||.|..+. .+.+..++.++|||||+|.+.++|.+|+.+++..|.|+.|.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIE------LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEEC------CCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 699999999999999999999999887655 23333457789999999999999999997799999999999975
Q ss_pred C
Q 009052 327 P 327 (545)
Q Consensus 327 ~ 327 (545)
+
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 3
No 249
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.2e-16 Score=124.51 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=70.6
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIY------LAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEE------EEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE------EeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 34678999999999999999999999999876543 2222235667899999999999999999 7999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 86 ~l~v~~a~~~~ 96 (103)
T 2cq0_A 86 ILNVEWAKPST 96 (103)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999876543
No 250
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.57 E-value=2.2e-16 Score=126.23 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=67.3
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEE-EecCCCcEEEEEecCHHHHHHHHHcCCceecC
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNV-YINHEKKFAFVEMRSVEEASNAMALDGIIFEG 319 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~-~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g 319 (545)
.....++|||+|||+++|+++|+++|+.|| |..+. ++.+. ..+.++|||||+|.+.++|.+|+.|+|..|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~------i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g 87 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVR------LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 87 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEE------CSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE------EEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 345678999999999999999999999999 76654 12222 25678999999999999999999999999999
Q ss_pred ceeEEeCCCCC
Q 009052 320 APVKVRRPSDY 330 (545)
Q Consensus 320 ~~l~v~~~~~~ 330 (545)
+.|.|.++...
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999987543
No 251
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=8.6e-16 Score=129.39 Aligned_cols=83 Identities=13% Similarity=0.278 Sum_probs=72.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhc--CCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCc---
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIG--GNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGI--- 315 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~--- 315 (545)
....++|||+|||+++|+++|+++|+.||.|.. ++ ++.+..++.++|||||+|.+. +|.+|+ .|||.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~------i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVR------VIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEE------CCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEE------EEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 356789999999999999999999999999854 43 344455788999999999999 999999 99999
Q ss_pred -eecCceeEEeCCCCCC
Q 009052 316 -IFEGAPVKVRRPSDYN 331 (545)
Q Consensus 316 -~~~g~~l~v~~~~~~~ 331 (545)
.|.|+.|.|.++....
T Consensus 93 ~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGSK 109 (131)
T ss_dssp CCGGGCCCCCEECCCSC
T ss_pred ccCCCEEEEEEECCCCC
Confidence 9999999999887654
No 252
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-15 Score=122.13 Aligned_cols=82 Identities=21% Similarity=0.402 Sum_probs=70.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHH-HHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCce-ecC
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQ-VMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII-FEG 319 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~-~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~-~~g 319 (545)
.+.++|||+|||+++|+++|+++|+. ||.|..+. ++.+. ++.++|||||+|.+.++|.+|+ .|++.. |.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~------i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGK------VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEE------EEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEE------EEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 45689999999999999999999999 99876554 22222 6677999999999999999999 799999 999
Q ss_pred ceeEEeCCCCCC
Q 009052 320 APVKVRRPSDYN 331 (545)
Q Consensus 320 ~~l~v~~~~~~~ 331 (545)
+.|.|.++....
T Consensus 80 ~~l~v~~a~~~~ 91 (104)
T 2dhg_A 80 KPVRLSVAIPKA 91 (104)
T ss_dssp SCCCCCBCCCCC
T ss_pred EeEEEEEccCCC
Confidence 999999876543
No 253
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-15 Score=122.30 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=69.3
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. +.....+.++|||||+|.+.++|.+|+ .|++..|.|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 86 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLR-------LVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKEN 86 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE-------EEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34568999999999999999999999999875543 222224667899999999999999999 8999999999
Q ss_pred eeEEeCCCCC
Q 009052 321 PVKVRRPSDY 330 (545)
Q Consensus 321 ~l~v~~~~~~ 330 (545)
.|.|.++...
T Consensus 87 ~l~v~~a~~~ 96 (100)
T 2do4_A 87 IIKVAISNSG 96 (100)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEECCCC
Confidence 9999987644
No 254
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=3.2e-15 Score=120.05 Aligned_cols=78 Identities=27% Similarity=0.517 Sum_probs=73.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+. +|..|+|+.|.|.++..+
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 10 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcC
Confidence 589999999999999999999999999999999997 99999999999999999999997 999999999999998544
Q ss_pred C
Q 009052 446 A 446 (545)
Q Consensus 446 ~ 446 (545)
.
T Consensus 87 ~ 87 (102)
T 2xs2_A 87 Q 87 (102)
T ss_dssp C
T ss_pred c
Confidence 3
No 255
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1e-15 Score=123.26 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=70.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+ .+.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAK------VMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEE------EEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4678999999999999999999999999876553 2222 5677999999999999999999 79999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2d9p_A 85 LYVALAQRKE 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEecccc
Confidence 9999876554
No 256
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.6e-14 Score=114.00 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhc--CCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESF--GPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
..++|||+|||..+++++|+++|++| |.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45689999999999999999999999 889988874 56999999999999999999999999999999999
Q ss_pred cCCCCC
Q 009052 442 ANQGAN 447 (545)
Q Consensus 442 a~~~~~ 447 (545)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 976653
No 257
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=9.6e-15 Score=124.92 Aligned_cols=77 Identities=22% Similarity=0.235 Sum_probs=69.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCC--eEEEEEEcC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRAN 443 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g--~~l~v~~a~ 443 (545)
.+|||+||++.+++++|+++|++||.|+.|.|... .++|||||+|.+.++|.+|++.|||..|.| +.|+|.|+.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 36899999999999999999999999999998754 247899999999999999999999999965 999999997
Q ss_pred CCC
Q 009052 444 QGA 446 (545)
Q Consensus 444 ~~~ 446 (545)
...
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 664
No 258
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.9e-16 Score=127.61 Aligned_cols=82 Identities=23% Similarity=0.341 Sum_probs=69.0
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCc
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 320 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~ 320 (545)
.....++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+||.||+..|.|+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 94 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVR------IISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGV 94 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------ECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEE------EEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCe
Confidence 345678999999999999999999999999765443 22222346789999999999999999999999999999
Q ss_pred eeEEeCCC
Q 009052 321 PVKVRRPS 328 (545)
Q Consensus 321 ~l~v~~~~ 328 (545)
.|.|.++.
T Consensus 95 ~l~V~~a~ 102 (114)
T 2cq4_A 95 PIIVQASQ 102 (114)
T ss_dssp EEEEEEHH
T ss_pred EEEEEecC
Confidence 99998754
No 259
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.57 E-value=1.6e-15 Score=119.41 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=69.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|++||.|..+. +.. ..+.++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~-------i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYAD-------IKM-ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEE-------EEE-SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE-------EEc-cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4578999999999999999999999999876543 221 35667899999999999999999 79999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 78 l~v~~a~~~~ 87 (92)
T 2dgv_A 78 IDVRIDRNAS 87 (92)
T ss_dssp CCCEECSCCS
T ss_pred EEEEEcCCCC
Confidence 9999876543
No 260
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.6e-15 Score=115.42 Aligned_cols=73 Identities=22% Similarity=0.387 Sum_probs=66.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-Hc-CCceecCc
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-AL-DGIIFEGA 320 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l-~g~~~~g~ 320 (545)
...++|||+|||+.+|+++|+++|++||. |..+.+..++|||||+|.+.++|.+|+ .| ++..|.|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~------------i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGE------------IRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSC------------EEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCC------------EeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 45689999999999999999999999995 566666678999999999999999999 68 99999999
Q ss_pred eeEEeCC
Q 009052 321 PVKVRRP 327 (545)
Q Consensus 321 ~l~v~~~ 327 (545)
+|.|.++
T Consensus 78 ~l~v~~a 84 (85)
T 2ytc_A 78 RLNVKWG 84 (85)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 9999875
No 261
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.57 E-value=3.2e-15 Score=123.38 Aligned_cols=77 Identities=21% Similarity=0.387 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcc--EEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLR--GFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 441 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 441 (545)
...+|||+|||+.+++++|+++|+.| .|+ .|.|+.++. |.++|||||+|.+.++|.+||. +++..|+|+.|.|.+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 44689999999999999999999999 677 899999975 9999999999999999999996 578999999999998
Q ss_pred cC
Q 009052 442 AN 443 (545)
Q Consensus 442 a~ 443 (545)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 83
No 262
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.6e-15 Score=120.18 Aligned_cols=80 Identities=26% Similarity=0.409 Sum_probs=67.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+++|+++|+++|++||.|..+. -.....++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~---------i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDID---------LKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEE---------ECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE---------EEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4568999999999999999999999999764332 1223446899999999999999999 99999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 91 l~V~~a~~~~ 100 (109)
T 1x4a_A 91 LRVEFPRSGR 100 (109)
T ss_dssp CEEECCCCCC
T ss_pred EEEEEcccCC
Confidence 9999976543
No 263
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=1.2e-14 Score=119.34 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=67.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceE-EEEEecChHHHHHHHHHhCCCccCC--eEEEEEEcC
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGY-AFCVYQDLSVTDIACAALNGIKMGD--KTLTVRRAN 443 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~e~A~~A~~~l~g~~~~g--~~l~v~~a~ 443 (545)
.|||+||++.+++++|+++|++||.|..|.|... .|| |||+|.+.++|..|+..|||..|.| +.|.|.|+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4789999999999999999999999999998653 376 9999999999999999999999987 699999997
Q ss_pred CCC
Q 009052 444 QGA 446 (545)
Q Consensus 444 ~~~ 446 (545)
...
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 664
No 264
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.2e-14 Score=113.88 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|| .+++++|+++|++||.|..|.|.. ++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 4468999996 899999999999999999999853 48999999999999999999999999999999999997
Q ss_pred CCCC
Q 009052 444 QGAN 447 (545)
Q Consensus 444 ~~~~ 447 (545)
....
T Consensus 86 ~~~~ 89 (97)
T 1x5p_A 86 KQPM 89 (97)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6653
No 265
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.57 E-value=1.2e-15 Score=123.35 Aligned_cols=82 Identities=24% Similarity=0.247 Sum_probs=69.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC--
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG-- 319 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g-- 319 (545)
.+.++|||+|||+.+|+++|+++|+.||.|..+. |.....+.++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~ 85 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT-------VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA 85 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------EEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 4578999999999999999999999999876553 222235666899999999999999999 899999988
Q ss_pred -ceeEEeCCCCCC
Q 009052 320 -APVKVRRPSDYN 331 (545)
Q Consensus 320 -~~l~v~~~~~~~ 331 (545)
++|.|.++....
T Consensus 86 ~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 86 SSSLVVKFADTDK 98 (105)
T ss_dssp SSCCEEEESCSSC
T ss_pred CccEEEEECccCc
Confidence 999999876543
No 266
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.57 E-value=7.8e-16 Score=125.55 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=68.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|+|..|.|+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIH------LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------CCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 44678999999999999999999999999765443 1222234567899999999999999999 7999999999
Q ss_pred eeEEeCCCC
Q 009052 321 PVKVRRPSD 329 (545)
Q Consensus 321 ~l~v~~~~~ 329 (545)
.|.|.++..
T Consensus 97 ~l~V~~a~~ 105 (110)
T 1oo0_B 97 TIQVDWCFV 105 (110)
T ss_dssp ECEEEESEE
T ss_pred EEEEEEccc
Confidence 999998654
No 267
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=7.9e-15 Score=115.76 Aligned_cols=77 Identities=26% Similarity=0.445 Sum_probs=68.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
..+|||+|||..+++++|+++|+.||.|..| +.++.+|. ||||+|.+.++|.+||. |||..|+|+.|.|.++..
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 4689999999999999999999999999987 44444554 99999999999999998 999999999999999865
Q ss_pred CCC
Q 009052 445 GAN 447 (545)
Q Consensus 445 ~~~ 447 (545)
...
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 268
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.4e-16 Score=124.03 Aligned_cols=84 Identities=29% Similarity=0.445 Sum_probs=71.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
....++|||+|||+.+++++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFR------LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEE------EEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEE------EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 34568999999999999999999999999876543 2222235667899999999999999999 8999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 79 ~l~v~~a~~~~ 89 (104)
T 1p1t_A 79 ALRVDNAASEK 89 (104)
T ss_dssp CBEEEETTCTT
T ss_pred EEEEEeCCCcc
Confidence 99999876544
No 269
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.56 E-value=1.2e-15 Score=123.70 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=68.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|..||.|..+. +....++.++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAA-------VHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE-------EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4578999999999999999999999999876543 222225677899999999999999999 79999999999
Q ss_pred eEEeCCC
Q 009052 322 VKVRRPS 328 (545)
Q Consensus 322 l~v~~~~ 328 (545)
|.|.++.
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9998753
No 270
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.56 E-value=5.3e-15 Score=119.71 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=66.5
Q ss_pred hhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 240 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 240 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
......++|||+|||+.+|+++|+++|++||.|..+ .+. +|||||+|.+.++|.+|+ .|||..|.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v------------~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEV------------KIL--NGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEE------------EEE--TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEE------------EEE--CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 445678899999999999999999999999976433 222 899999999999999999 89999999
Q ss_pred CceeEEeCCCCC
Q 009052 319 GAPVKVRRPSDY 330 (545)
Q Consensus 319 g~~l~v~~~~~~ 330 (545)
|+.|.|.++...
T Consensus 92 g~~l~V~~a~~~ 103 (108)
T 2jvo_A 92 NQPLEVVYSKLP 103 (108)
T ss_dssp TEECEEESCSCC
T ss_pred CeEEEEEEecCC
Confidence 999999987643
No 271
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=8.2e-15 Score=114.04 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||+|||..+++++|+++|++| .|..|.|. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3589999999999999999999999 99999985 3589999999999999999999999999999999999965
Q ss_pred CC
Q 009052 445 GA 446 (545)
Q Consensus 445 ~~ 446 (545)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 272
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.3e-15 Score=123.03 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=68.8
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
...+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|++|| .+++ .|.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g 85 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAV------VITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG 85 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEE------ESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEE------EEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC
Confidence 345678999999999999999999999999865443 2222234667899999999999999999 7887 8999
Q ss_pred ceeEEeCCCCC
Q 009052 320 APVKVRRPSDY 330 (545)
Q Consensus 320 ~~l~v~~~~~~ 330 (545)
+.|.|.++...
T Consensus 86 ~~l~V~~a~~~ 96 (116)
T 2cqd_A 86 RKANVNLAYLG 96 (116)
T ss_dssp EECEEEESTTT
T ss_pred EEEEEEEcccC
Confidence 99999997654
No 273
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2e-14 Score=115.54 Aligned_cols=82 Identities=24% Similarity=0.386 Sum_probs=68.2
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. +.. ....++|||||+|.+.++|.+|+ .|++..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~-------i~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCK-------MIT-EHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEE-------EEC-CCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEE-------EEe-cCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 34678999999999999999999999999765432 111 12336899999999999999999 7999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2cqi_A 84 EVKVNWATTPS 94 (103)
T ss_dssp EEEEEECCCTT
T ss_pred eEEEEECCCCc
Confidence 99999976543
No 274
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.8e-16 Score=121.66 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=67.7
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+++++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTK------AILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEE------EECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 3578999999999999999999999999875543 2222235677999999999999999999 79999999999
Q ss_pred eEEeCCC
Q 009052 322 VKVRRPS 328 (545)
Q Consensus 322 l~v~~~~ 328 (545)
|++.++.
T Consensus 77 ~~~~~~~ 83 (85)
T 1x4e_A 77 AKQSGPS 83 (85)
T ss_dssp CCSSCCC
T ss_pred EeecCCC
Confidence 9998754
No 275
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=9e-15 Score=116.21 Aligned_cols=76 Identities=20% Similarity=0.351 Sum_probs=67.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec--C
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE--G 319 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~--g 319 (545)
.+.++|||+|||+.+|+++|+++|++||. |..+.+...+|||||+|.+.++|++|+ .||+..|. |
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGS------------IRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSC------------EEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 35679999999999999999999999995 556666667999999999999999999 79999999 9
Q ss_pred ceeEEeCCCCC
Q 009052 320 APVKVRRPSDY 330 (545)
Q Consensus 320 ~~l~v~~~~~~ 330 (545)
+.|.|.++...
T Consensus 83 ~~l~V~~a~~~ 93 (97)
T 1why_A 83 RRLRVDFAKSG 93 (97)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEECCCC
Confidence 99999987654
No 276
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=1.7e-15 Score=121.85 Aligned_cols=82 Identities=20% Similarity=0.332 Sum_probs=69.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCcee
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l 322 (545)
.+.++|||+|||+.+|+++|+++|+.|| |..+. ++.+..++.++|||||+|.+.++|.+||.||+..|.|+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 85 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVR------LVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSL 85 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEE------EEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEE------EeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEE
Confidence 3568999999999999999999999997 65543 2333334667899999999999999999999999999999
Q ss_pred EEeCCCCCC
Q 009052 323 KVRRPSDYN 331 (545)
Q Consensus 323 ~v~~~~~~~ 331 (545)
.|.++....
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dng_A 86 RVDIAEGRK 94 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999876543
No 277
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.8e-15 Score=120.20 Aligned_cols=76 Identities=20% Similarity=0.181 Sum_probs=69.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
....++|||+|||+.+|+++|+++|++||. |..+.+..++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGS------------LGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 446789999999999999999999999995 566667779999999999999999999 8999999999
Q ss_pred eeEEeCCCC
Q 009052 321 PVKVRRPSD 329 (545)
Q Consensus 321 ~l~v~~~~~ 329 (545)
+|.|.|+..
T Consensus 75 ~l~V~~a~~ 83 (111)
T 1whx_A 75 PLYLEWAPI 83 (111)
T ss_dssp BCEEEEEET
T ss_pred EEEEEECCC
Confidence 999998754
No 278
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.7e-15 Score=120.71 Aligned_cols=83 Identities=20% Similarity=0.244 Sum_probs=67.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHH-hhcCCCCCCCCcE-EEEEecCCCcEEEEEecCHHHHHHHH-HcC--Ccee
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMA-AIGGNTAGPGDAV-VNVYINHEKKFAFVEMRSVEEASNAM-ALD--GIIF 317 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~-i~~~~~~~~~~~v-~~~~~~~~~g~afV~F~~~~~A~~a~-~l~--g~~~ 317 (545)
.+.++|||+|||+.+|+++|+++|..||. |..+. ++ .+..++.++|||||+|.+.++|.+|+ .|+ +..|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~------i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~ 79 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVI------VYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL 79 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEE------CCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEE------EEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee
Confidence 45789999999999999999999999997 54432 11 11223478999999999999999999 785 5899
Q ss_pred cCceeEEeCCCCCC
Q 009052 318 EGAPVKVRRPSDYN 331 (545)
Q Consensus 318 ~g~~l~v~~~~~~~ 331 (545)
.|+.|.|.++....
T Consensus 80 ~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 80 WGHQIAVDWAEPEI 93 (109)
T ss_dssp TTBCCEEEESCSSC
T ss_pred cCCeEEEEEcCCCC
Confidence 99999999987544
No 279
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-15 Score=122.42 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=69.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe-cCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI-NHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|..|| |..+. ++.+..+ +.++|||||+|.+.++|.+||.|++..|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~------i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 85 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVR------LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKR 85 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEE------CCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEE------EecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcE
Confidence 3458999999999999999999999999 76554 2222233 67799999999999999999999999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 86 l~V~~a~~~~ 95 (104)
T 1wi8_A 86 IRVDVADQAQ 95 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999876543
No 280
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.9e-15 Score=122.25 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=69.6
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|..||.|..+. |.....+.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~-------i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRAD-------ILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------EEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 34578999999999999999999999999876543 222224556899999999999999999 7999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 85 ~l~v~~a~~~~ 95 (114)
T 2do0_A 85 PMHVKMDERAL 95 (114)
T ss_dssp ECEEEECSCCC
T ss_pred EEEEEEcccCC
Confidence 99999876543
No 281
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.7e-15 Score=123.63 Aligned_cols=84 Identities=21% Similarity=0.342 Sum_probs=70.4
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
....++|||+|||+.+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+||.+++..|.|+.
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 97 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV------VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV 97 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEE------EECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE
Confidence 34568999999999999999999999999876543 222223467899999999999999999955999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 98 l~V~~a~~~~ 107 (116)
T 1x4b_A 98 VEPKRAVARE 107 (116)
T ss_dssp EEEECCSSCC
T ss_pred EEEEECCCCc
Confidence 9999876543
No 282
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=112.92 Aligned_cols=75 Identities=23% Similarity=0.427 Sum_probs=66.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+++|+++|+++|++||.| ..+.+. +|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i------------~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKV------------LECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCE------------EEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCE------------EEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 467899999999999999999999999965 344333 899999999999999999 89999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 72 l~v~~a~~~~ 81 (90)
T 2dnq_A 72 INVEASKNKS 81 (90)
T ss_dssp CEEECSSCCC
T ss_pred EEEEECCCCC
Confidence 9999976544
No 283
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-15 Score=126.94 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=71.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCcee
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l 322 (545)
...++|||+|||+++|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|.+||.||+..|.|+.|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~------~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 96 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSI------YIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFI 96 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTC------EEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceE------EEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 3568999999999999999999999999987654 4555567888999999999999999999999999999999
Q ss_pred EEeCCC
Q 009052 323 KVRRPS 328 (545)
Q Consensus 323 ~v~~~~ 328 (545)
.|.++.
T Consensus 97 ~V~~a~ 102 (124)
T 1wel_A 97 QVHPIT 102 (124)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 998764
No 284
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.8e-15 Score=120.18 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=68.8
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|.+||.|. +.....+.++|||||+|.+.++|++|+ .||+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~----------~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----------VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE----------CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE----------EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 34678999999999999999999999999762 222256778999999999999999999 7999999999
Q ss_pred eeEEeCCCCC
Q 009052 321 PVKVRRPSDY 330 (545)
Q Consensus 321 ~l~v~~~~~~ 330 (545)
.|.|.++...
T Consensus 82 ~l~v~~a~~~ 91 (101)
T 2fc9_A 82 AIRLELQGPR 91 (101)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEEcCCC
Confidence 9999987654
No 285
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.4e-14 Score=113.34 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=65.0
Q ss_pred ccceEEEcCCCCCCCHHHHH----HHHHHHHHhhcCCCCCCCCcEEEEEecCC---CcEEEEEecCHHHHHHHH-HcCCc
Q 009052 244 HARRVYVGGLPPTANEQSVA----TFFSQVMAAIGGNTAGPGDAVVNVYINHE---KKFAFVEMRSVEEASNAM-ALDGI 315 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~~~~~~~~~~v~~~~~~~~---~g~afV~F~~~~~A~~a~-~l~g~ 315 (545)
..++|||+|||+.+++++|+ ++|++||.| ..+.+... +|||||+|.+.++|.+|+ .|||.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v------------~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKV------------KSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCE------------EEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcE------------EEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCC
Confidence 45799999999999999999 999999975 44444322 899999999999999999 79999
Q ss_pred eecCceeEEeCCCCC
Q 009052 316 IFEGAPVKVRRPSDY 330 (545)
Q Consensus 316 ~~~g~~l~v~~~~~~ 330 (545)
.|.|+.|.|.++...
T Consensus 76 ~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 76 KIGSKKILVSLATGA 90 (96)
T ss_dssp EETTEEEEEEECCCS
T ss_pred EECCeEEEEEEcCCC
Confidence 999999999987543
No 286
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.54 E-value=1.3e-15 Score=127.50 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=69.8
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIH------LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------CCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 34578999999999999999999999999765443 1222235566999999999999999999 8999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 93 ~l~v~~a~~~~ 103 (126)
T 3ex7_B 93 PISVDWCFVRG 103 (126)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEEecCCC
Confidence 99999876443
No 287
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-15 Score=121.91 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=69.4
Q ss_pred cccceEEEcCCCCCC------CHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCc
Q 009052 243 RHARRVYVGGLPPTA------NEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGI 315 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~------te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~ 315 (545)
...++|||+|||+.+ |+++|+++|++||.|..+. +. ..++.++|||||+|.+.++|.+|+ .|||.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~-------i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDF-------YP-EEDGKTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEE-------CC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEE-------ee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 346799999999999 7899999999999876553 21 245678999999999999999999 79999
Q ss_pred eecCc-eeEEeCCCCCC
Q 009052 316 IFEGA-PVKVRRPSDYN 331 (545)
Q Consensus 316 ~~~g~-~l~v~~~~~~~ 331 (545)
.|.|+ +|.|.++.+..
T Consensus 85 ~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp ECSTTCEEEEECSCCCC
T ss_pred ccCCCceEEEEEcchHh
Confidence 99999 99999876543
No 288
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-15 Score=116.12 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=62.3
Q ss_pred cceEEEcCCCCCC------CHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCcee
Q 009052 245 ARRVYVGGLPPTA------NEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF 317 (545)
Q Consensus 245 ~~~l~V~nLp~~~------te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~ 317 (545)
+++|||+|||+.+ |+++|+++|++||.|..+. +. ..++.++|||||+|.+.++|.+|+ .|||..|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~-------i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDF-------YP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEE-------CC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEE-------ec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 3689999999999 7899999999999876543 11 245678999999999999999999 8999999
Q ss_pred cCc-eeEE
Q 009052 318 EGA-PVKV 324 (545)
Q Consensus 318 ~g~-~l~v 324 (545)
.|+ +|+|
T Consensus 73 ~g~~~l~V 80 (81)
T 2krb_A 73 DKQHTFRV 80 (81)
T ss_dssp SSSSCCCC
T ss_pred CCceeEEe
Confidence 999 8876
No 289
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=3.3e-15 Score=120.12 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=66.9
Q ss_pred ccccceEEEcCCCCC-CCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcC--Ccee
Q 009052 242 TRHARRVYVGGLPPT-ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD--GIIF 317 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~-~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~--g~~~ 317 (545)
..+.++|||+|||++ +|+++|+++|++||.| .++.+..++|||||+|.+.++|..|+ .|+ +..|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V------------~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKI------------KNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCC------------SEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCE------------EEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 346789999999998 9999999999999974 44555678999999999999999999 675 5669
Q ss_pred cCceeEEeCCCCCC
Q 009052 318 EGAPVKVRRPSDYN 331 (545)
Q Consensus 318 ~g~~l~v~~~~~~~ 331 (545)
.|++|.|.++....
T Consensus 90 ~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 90 QGRCVKVDLSEKYK 103 (112)
T ss_dssp SSSCCEEEEECSCS
T ss_pred CCEEEEEEECcccc
Confidence 99999999876544
No 290
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2e-15 Score=122.01 Aligned_cols=84 Identities=15% Similarity=0.312 Sum_probs=70.1
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+||..++..|.|+.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCV------IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEE------EEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 34678999999999999999999999999876543 222224566789999999999999999944999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 87 l~V~~a~~~~ 96 (105)
T 2dh8_A 87 IDPKPCTPRG 96 (105)
T ss_dssp EBCCCSCCSS
T ss_pred EEEEEccCCC
Confidence 9999876544
No 291
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=7.6e-15 Score=120.40 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=66.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeE-----EEE
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKT-----LTV 439 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~-----l~v 439 (545)
.++|||+|||..+++++|+++|++||.|+.|.|+.+ |||||+|.+.++|.+||+.|||..|.|+. |.|
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 368999999999999999999999999999999764 89999999999999999999999999998 777
Q ss_pred EEcCC
Q 009052 440 RRANQ 444 (545)
Q Consensus 440 ~~a~~ 444 (545)
..+..
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 76644
No 292
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-15 Score=124.47 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=68.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHh-hcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAA-IGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i-~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
.+.++|||+|||+++|+++|+++|+.||.| ..+. ++.+ .++.++|||||+|.+.++|.+||.+++..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~------i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 85 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVH------VLVD-NNGQGLGQALVQFKNEDDARKSERLHRKKLNGRE 85 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEE------ECCC-TTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEE------EEEC-CCCCcceEEEEEECCHHHHHHHHHhCCCccCCeE
Confidence 456899999999999999999999999987 5443 2222 2678899999999999999999966999999999
Q ss_pred eEEeCCCCC
Q 009052 322 VKVRRPSDY 330 (545)
Q Consensus 322 l~v~~~~~~ 330 (545)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (114)
T 2cpy_A 86 AFVHVVTLE 94 (114)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999886543
No 293
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.54 E-value=9.4e-16 Score=120.11 Aligned_cols=79 Identities=29% Similarity=0.434 Sum_probs=65.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
++|||+|||+++++++|+++|++||.|..+. .+.+..++.++|||||+|.+.+ |.+|+ .|||..|.|+.|.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVK------LIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEE------ECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEE------EEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEE
Confidence 6899999999999999999999999876543 2222234778999999999999 99999 89999999999999
Q ss_pred eCCCCCC
Q 009052 325 RRPSDYN 331 (545)
Q Consensus 325 ~~~~~~~ 331 (545)
.++....
T Consensus 75 ~~a~~~~ 81 (90)
T 2ki2_A 75 TEANPKK 81 (90)
T ss_dssp EEC----
T ss_pred EEcCCCC
Confidence 9876543
No 294
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=5.4e-15 Score=117.99 Aligned_cols=77 Identities=27% Similarity=0.505 Sum_probs=68.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|++||.| ..+.+..++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i------------~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKA------------GEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCC------------SEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCe------------EEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 456899999999999999999999999964 45556678999999999999999999 99999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpj_A 81 LRVRFACHSA 90 (99)
T ss_dssp CEEEESSCCS
T ss_pred EEEEEcCCCC
Confidence 9999876543
No 295
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-14 Score=111.07 Aligned_cols=76 Identities=20% Similarity=0.406 Sum_probs=66.1
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|++||.| ..+.+. ++||||+|.+.++|.+|+ .|||..|.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v------------~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRV------------IECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCE------------EEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCE------------EEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3467899999999999999999999999964 444444 569999999999999999 7999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 72 ~l~v~~a~~~~ 82 (90)
T 2dnp_A 72 RINVELSTKGQ 82 (90)
T ss_dssp ECEEEESCCCC
T ss_pred EEEEEECCCCC
Confidence 99999876543
No 296
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=2.2e-15 Score=124.19 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=68.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHH---hhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecC
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMA---AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEG 319 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~---i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g 319 (545)
...++|||+|||+++|+++|+++|+.||. |..+. ++.+ ..+.++|||||+|.+.++|.+||.+++..|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~------i~~~-~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~g 87 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVH------FIYT-REGRQSGEAFVELESEDDVKLALKKDRESMGH 87 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEE------EEEC-SSSCEEEEEEEEBSSHHHHHHHGGGTTEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEE------EEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCeECC
Confidence 45789999999999999999999999998 65553 2223 33778999999999999999999999999999
Q ss_pred ceeEEeCCC
Q 009052 320 APVKVRRPS 328 (545)
Q Consensus 320 ~~l~v~~~~ 328 (545)
+.|.|.++.
T Consensus 88 r~i~V~~a~ 96 (118)
T 2db1_A 88 RYIEVFKSH 96 (118)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEECC
Confidence 999998764
No 297
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.53 E-value=1.3e-14 Score=121.08 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=70.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+++++|+++|+.||.|..+. +.....+.++|||||+|.+.++|.+|+ .|+|..|.|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~-------i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 104 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAA-------VDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGR 104 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEE-------EECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-------EEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 35678999999999999999999999999876654 222236778999999999999999999 7999999999
Q ss_pred eeEEeCCCCC
Q 009052 321 PVKVRRPSDY 330 (545)
Q Consensus 321 ~l~v~~~~~~ 330 (545)
.|.|.++...
T Consensus 105 ~l~V~~a~~~ 114 (124)
T 2kt5_A 105 PMDIQLVASQ 114 (124)
T ss_dssp EEEEEEECCT
T ss_pred EEEEEEeCCC
Confidence 9999987654
No 298
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.3e-14 Score=115.20 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=67.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. |.. ....++|||||+|.+.++|.+|+ .|++..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~-------i~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE-------IIF-NERGSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEE-------EEC-CTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EEe-cCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34678999999999999999999999999764432 111 11235899999999999999999 7999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 84 ~l~v~~a~~~~ 94 (103)
T 2cq3_A 84 KIEVNNATARV 94 (103)
T ss_dssp ECEEEECCSSC
T ss_pred EEEEEEcccCC
Confidence 99999876544
No 299
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=6.6e-15 Score=118.43 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=69.2
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
..+.++|||+|||+.+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+||. ++..|.|+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~ 84 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQ------VKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRW 84 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEE------EEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEE------EEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeE
Confidence 45678999999999999999999999999876543 22233356778999999999999999996 578999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 85 l~v~~a~~~~ 94 (103)
T 2cqg_A 85 CDCKLPNSKQ 94 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEEecCCCC
Confidence 9999976554
No 300
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-15 Score=115.51 Aligned_cols=75 Identities=11% Similarity=0.250 Sum_probs=64.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEE
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKV 324 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v 324 (545)
++|||+|||+++|+++|+++|++||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .++ ..|.|++|.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECL------VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEE------EECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEE
Confidence 4799999999999999999999999876543 2222345778999999999999999999 677 9999999999
Q ss_pred eCC
Q 009052 325 RRP 327 (545)
Q Consensus 325 ~~~ 327 (545)
.++
T Consensus 74 ~~a 76 (77)
T 1uaw_A 74 KVA 76 (77)
T ss_dssp EEC
T ss_pred Eec
Confidence 874
No 301
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.1e-15 Score=120.45 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=67.0
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhc-CCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIG-GNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~-~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
...++|||+|||+.+|+++|+++|..||.|.. +. ++.+ .++.++|||||+|.+.++|.+||.+++..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~------i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMT------LPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEE------CCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEE------EEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 35679999999999999999999999997643 22 1222 4677899999999999999999955999999999
Q ss_pred eEEeCCCC
Q 009052 322 VKVRRPSD 329 (545)
Q Consensus 322 l~v~~~~~ 329 (545)
|.|.++..
T Consensus 86 i~v~~~~~ 93 (104)
T 1wg5_A 86 IEIFKSSR 93 (104)
T ss_dssp CEEEEECT
T ss_pred EEEEECCH
Confidence 99987653
No 302
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.3e-15 Score=116.56 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=68.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCcee
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l 322 (545)
...++|||+|||+++|+++|+++|+.| .|..+. ++.+ ..+.++|||||+|.+.++|.+|+.|++..|.|+.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~------i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i 79 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIR------IVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYI 79 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEE------EEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEE------EEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEE
Confidence 456899999999999999999999999 776543 2222 55677999999999999999999999999999999
Q ss_pred EEeCCCCC
Q 009052 323 KVRRPSDY 330 (545)
Q Consensus 323 ~v~~~~~~ 330 (545)
.|.++...
T Consensus 80 ~v~~a~~~ 87 (91)
T 2dgw_A 80 EVFREKSG 87 (91)
T ss_dssp EEEEESSC
T ss_pred EEEECCcC
Confidence 99886543
No 303
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.4e-14 Score=115.16 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=66.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC--
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG-- 319 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g-- 319 (545)
...++|||+|||+++|+++|+++|.+||. |..+.+... |||||+|.+.++|++|| .||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 79 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 79 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSC------------EEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCc
Confidence 35689999999999999999999999996 445555444 99999999999999999 799999999
Q ss_pred ---ceeEEeCCCCCC
Q 009052 320 ---APVKVRRPSDYN 331 (545)
Q Consensus 320 ---~~l~v~~~~~~~ 331 (545)
+.|.|.++....
T Consensus 80 ~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 80 GETAYIRVKVDGPRS 94 (108)
T ss_dssp SCEEEEEEEESSCCS
T ss_pred CcceEEEEEeCCCCC
Confidence 999999877643
No 304
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.53 E-value=6.4e-14 Score=112.55 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=65.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+++|+++|+++|.+||.| ..+.+. ++||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i------------~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKL------------ERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCE------------EEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE------------EEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 356899999999999999999999999964 444443 679999999999999999 79999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 75 l~v~~a~~~~ 84 (103)
T 2dgu_A 75 IEIVFAKPPD 84 (103)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEcCCCc
Confidence 9999987654
No 305
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=5.1e-15 Score=117.44 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=68.9
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|+.||.|. ++ ..++.++|||||+|.+.++|.+|+ .|+|..|.|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~----------~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 81 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIR----------LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 81 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEEC----------CE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE----------Ee-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 45678999999999999999999999999762 22 566778999999999999999999 7999999999
Q ss_pred eeEEeCCCCC
Q 009052 321 PVKVRRPSDY 330 (545)
Q Consensus 321 ~l~v~~~~~~ 330 (545)
.|.|.++...
T Consensus 82 ~l~v~~a~~~ 91 (96)
T 1fjc_A 82 SVSLYYTGEK 91 (96)
T ss_dssp EEEEEECSSS
T ss_pred EEEEEEcCCC
Confidence 9999987644
No 306
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.53 E-value=2.6e-15 Score=126.78 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=71.6
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|++..|.|+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~------i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY------IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEE------CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 34578999999999999999999999999876554 2223345778999999999999999999 8999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 118 ~l~V~~a~~~~ 128 (135)
T 2lea_A 118 ELRVQMARYGR 128 (135)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEECCCCC
Confidence 99999876543
No 307
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-15 Score=121.94 Aligned_cols=79 Identities=25% Similarity=0.204 Sum_probs=66.8
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCcee
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPV 322 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l 322 (545)
...++|||+|||+++|+++|+++|+.|| ++.+. ++.+ ..+.++|||||+|.+.++|++||.+|+..|.|+.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~------i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVH------IEIG-PDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEE------EEES-SSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEE------EEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 4567999999999999999999999999 43443 2333 36778999999999999999999889999999999
Q ss_pred EEeCCCC
Q 009052 323 KVRRPSD 329 (545)
Q Consensus 323 ~v~~~~~ 329 (545)
.|.++..
T Consensus 85 ~V~~~~~ 91 (102)
T 1wez_A 85 ELFLNST 91 (102)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9987543
No 308
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.6e-14 Score=114.91 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=66.7
Q ss_pred ccccceEEE--cCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCcee-
Q 009052 242 TRHARRVYV--GGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF- 317 (545)
Q Consensus 242 ~~~~~~l~V--~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~- 317 (545)
..+.++||| +||++.+|+++|+++|++||. |..+.+..++|||||+|.+.++|.+|+ .|||..|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~------------v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~ 89 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV 89 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSC------------EEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 345788999 779999999999999999996 555666667999999999999999999 8999988
Q ss_pred ----cCceeEEeCCCCC
Q 009052 318 ----EGAPVKVRRPSDY 330 (545)
Q Consensus 318 ----~g~~l~v~~~~~~ 330 (545)
.|++|.|.++...
T Consensus 90 ~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 90 DDLGQKITLYLNFVEKV 106 (114)
T ss_dssp CTTSCEEECEEEEESCC
T ss_pred cccCCCcEEEEEecccC
Confidence 6889999886543
No 309
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=2.8e-14 Score=114.33 Aligned_cols=80 Identities=11% Similarity=0.252 Sum_probs=69.9
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHHHhcCCccEEEEeecCCC--CCcceEEEEEecChHHHHHHHHHhCCCc
Q 009052 364 GPDRIFVGGL--PYYFT--------EAQIRELLESFGPLRGFDLVKDRET--GNSKGYAFCVYQDLSVTDIACAALNGIK 431 (545)
Q Consensus 364 ~~~~l~v~nl--p~~~~--------~~~l~~~f~~~G~i~~v~i~~~~~~--g~~~g~afV~f~~~e~A~~A~~~l~g~~ 431 (545)
++++|+|.|| |..+. +++|+++|++||.|.+|.|+.+..+ +.++|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568999999 44443 3799999999999999999988654 3678999999999999999999999999
Q ss_pred cCCeEEEEEEcC
Q 009052 432 MGDKTLTVRRAN 443 (545)
Q Consensus 432 ~~g~~l~v~~a~ 443 (545)
|+|+.|.|.|+.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999983
No 310
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.52 E-value=2.5e-15 Score=126.18 Aligned_cols=80 Identities=21% Similarity=0.222 Sum_probs=68.8
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHH---hhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceec
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMA---AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFE 318 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~---i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~ 318 (545)
....++|||+|||+++|+++|+++|+.||. |..+. ++.+. .++++|||||+|.+.++|.+||.||+..|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~------i~~d~-~g~srG~aFV~F~~~e~a~~Al~~~g~~l~ 113 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVH------FIYTR-EGRQSGEAFVELGSEDDVKMALKKDRESMG 113 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEE------EEECS-SSCEEEEEEEECSSHHHHHHHHTTTEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEE------EEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCEEC
Confidence 345689999999999999999999999998 55543 23333 378899999999999999999999999999
Q ss_pred CceeEEeCCC
Q 009052 319 GAPVKVRRPS 328 (545)
Q Consensus 319 g~~l~v~~~~ 328 (545)
|+.|.|.++.
T Consensus 114 gr~i~V~~a~ 123 (136)
T 2hgl_A 114 HRYIEVFKSH 123 (136)
T ss_dssp SSEEEEEECC
T ss_pred CEEEEEEECC
Confidence 9999998764
No 311
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.52 E-value=2.3e-14 Score=111.37 Aligned_cols=70 Identities=29% Similarity=0.620 Sum_probs=65.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc----C-------CccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESF----G-------PLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG 433 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~ 433 (545)
.++|||+|||..+++++|+++|+.| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..|.
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 3689999999999999999999999 8 8999998765 799999999999999999 99999999
Q ss_pred CeEEEEEE
Q 009052 434 DKTLTVRR 441 (545)
Q Consensus 434 g~~l~v~~ 441 (545)
|+.|.|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 312
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.52 E-value=4.9e-15 Score=128.99 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=70.6
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|| .||+..|.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 109 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKII------MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR 109 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 34678999999999999999999999999865443 2222234667899999999999999999 7999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 110 ~l~V~~a~~~~ 120 (156)
T 1h2v_Z 110 IIRTDWDAGFK 120 (156)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEECCCCC
Confidence 99999987544
No 313
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-14 Score=114.42 Aligned_cols=76 Identities=21% Similarity=0.427 Sum_probs=65.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCC-ceecCc
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDG-IIFEGA 320 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g-~~~~g~ 320 (545)
...++|||+|||+++|+++|+++|++||.|+... ++ .++|||||+|.+.++|.+|+ .||| ..|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~-------~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQ-------VL-----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSC-------EE-----EETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEE-------EE-----cCCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 3567999999999999999999999999833221 11 35899999999999999999 8999 999999
Q ss_pred eeEEeCCCCC
Q 009052 321 PVKVRRPSDY 330 (545)
Q Consensus 321 ~l~v~~~~~~ 330 (545)
.|.|.++...
T Consensus 74 ~l~v~~a~~~ 83 (93)
T 2cqh_A 74 IMEVDYSVSK 83 (93)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEccCc
Confidence 9999987654
No 314
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.3e-14 Score=107.27 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=62.2
Q ss_pred ccce-EEEcCCCCCCCHHH----HHHHHHHHH-HhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009052 244 HARR-VYVGGLPPTANEQS----VATFFSQVM-AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII 316 (545)
Q Consensus 244 ~~~~-l~V~nLp~~~te~~----l~~~f~~~G-~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~ 316 (545)
+..| |||+|||..+++++ |+++|++|| .| +++ + .|+|||+|.+.++|+.|+ .|+|..
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~V------------l~V-t---gG~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKV------------LSI-T---GCSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCE------------EEC-C---TTCEEEEESSHHHHHHHHHHHTTCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCee------------EEE-e---cCEEEEEECCHHHHHHHHHHhcCCc
Confidence 3455 99999999999988 558999994 74 444 2 299999999999999999 899999
Q ss_pred ecCceeEEeCCCCCCC
Q 009052 317 FEGAPVKVRRPSDYNP 332 (545)
Q Consensus 317 ~~g~~l~v~~~~~~~~ 332 (545)
|.|++|+|.+++....
T Consensus 71 l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 71 VFGNRIIVSFTPKNRE 86 (96)
T ss_dssp SSSSCCEEESSCCSCC
T ss_pred cCCceEEEEecCCCcc
Confidence 9999999999876553
No 315
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.4e-14 Score=112.10 Aligned_cols=76 Identities=28% Similarity=0.464 Sum_probs=66.1
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHH--HHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQV--MAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~--G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
..+.++|||+|||+.+|+++|+++|++| |. |..+.+ .+|||||+|.+.++|.+|+ .||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~------------v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGA------------VERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTC------------EEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcc------------eEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3467899999999999999999999999 64 444443 4789999999999999999 79999999
Q ss_pred CceeEEeCCCCCC
Q 009052 319 GAPVKVRRPSDYN 331 (545)
Q Consensus 319 g~~l~v~~~~~~~ 331 (545)
|+.|.|.++....
T Consensus 78 g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 78 GSPIEVTLAKPVD 90 (99)
T ss_dssp TEEEEEECCCCCC
T ss_pred CcEEEEEECCCCC
Confidence 9999999976543
No 316
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=124.92 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=72.2
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|+.||.|..+.+.. .-.+....++.++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~-~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRI-MFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHH-HCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccc-eeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4678999999999999999999999999876531000 001333468899999999999999999999 79999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999986543
No 317
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.51 E-value=1e-14 Score=127.33 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=70.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
...++|||+|||+.+|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY------IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEE------CCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4568999999999999999999999999876554 2223346778999999999999999999 89999999999
Q ss_pred eEEeCCCCC
Q 009052 322 VKVRRPSDY 330 (545)
Q Consensus 322 l~v~~~~~~ 330 (545)
|.|.++...
T Consensus 142 l~v~~a~~~ 150 (158)
T 2kn4_A 142 LRVQMARYG 150 (158)
T ss_dssp EEEEEECCS
T ss_pred EEEEECCCC
Confidence 999987654
No 318
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-15 Score=120.14 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=64.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCceeE
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 323 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l~ 323 (545)
..++|||+|||+++|+++|+++|+.| .|..+. ++.+ ..++++|||||+|.+.++|.+||.+|+..|+|+.|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~------i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVH------LLKD-HVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVE 86 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEE------ECCC-TTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEE------EEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 45799999999999999999999999 554432 1222 236789999999999999999999999999999999
Q ss_pred EeCCC
Q 009052 324 VRRPS 328 (545)
Q Consensus 324 v~~~~ 328 (545)
|..+.
T Consensus 87 V~~a~ 91 (109)
T 2dnn_A 87 VSPAT 91 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 97654
No 319
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.51 E-value=4.2e-14 Score=109.97 Aligned_cols=73 Identities=18% Similarity=0.337 Sum_probs=62.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCc--cCCeEEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIK--MGDKTLTVRR 441 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~--~~g~~l~v~~ 441 (545)
...+|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+ |+|.. +.|+.|.|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 3468999999999999999999999999999999875 58999999999999973 45655 4699999999
Q ss_pred cCCC
Q 009052 442 ANQG 445 (545)
Q Consensus 442 a~~~ 445 (545)
+.++
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 9654
No 320
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.1e-14 Score=116.59 Aligned_cols=76 Identities=32% Similarity=0.473 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCC---CCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEE
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET---GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 440 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~ 440 (545)
..++|||+|||..+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|.+||+.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 346899999999999999999999999999 888877666 7999999999999999999999984 3666666665
Q ss_pred Ec
Q 009052 441 RA 442 (545)
Q Consensus 441 ~a 442 (545)
.+
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 321
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.7e-14 Score=110.78 Aligned_cols=76 Identities=28% Similarity=0.443 Sum_probs=65.9
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|++||.|.. +.+. ++||||+|.+.++|.+|+ .||+..|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~------------v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 72 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIE------------CDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGK 72 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCE------------EEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE------------EEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 346789999999999999999999999997543 3333 569999999999999999 8999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 73 ~l~V~~a~~~~ 83 (92)
T 2dgt_A 73 RMHVQLSTSRL 83 (92)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEEccCCC
Confidence 99999976543
No 322
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=5.6e-14 Score=115.97 Aligned_cols=75 Identities=24% Similarity=0.400 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 364 GPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
..++|||+|| .+++++|+++|++||.|..|.|.. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 3468999996 699999999999999999999963 48999999999999999999999999999999999997
Q ss_pred CCC
Q 009052 444 QGA 446 (545)
Q Consensus 444 ~~~ 446 (545)
...
T Consensus 110 ~~~ 112 (121)
T 2bz2_A 110 KQP 112 (121)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 323
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.50 E-value=3.1e-15 Score=121.12 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=67.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHH---hhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecC
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMA---AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEG 319 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~---i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g 319 (545)
...++|||+|||+++|+++|+++|+.||. |..+. ++.+.. +.++|||||+|.+.++|.+||.+++..|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~------i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~g 81 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIH------FLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQ 81 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEE------CCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEE------EEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCC
Confidence 46789999999999999999999999987 55543 222323 788999999999999999999999999999
Q ss_pred ceeEEeCCC
Q 009052 320 APVKVRRPS 328 (545)
Q Consensus 320 ~~l~v~~~~ 328 (545)
+.|.|.++.
T Consensus 82 r~i~V~~a~ 90 (107)
T 2lmi_A 82 RYVEVYEIN 90 (107)
T ss_dssp SCCCCEECC
T ss_pred eEEEEEECC
Confidence 999998765
No 324
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.50 E-value=8.9e-15 Score=124.99 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=67.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+.+|+++|+++|++||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|+|..|.|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ------IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------CCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEE------EeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34678999999999999999999999999765433 1222234667999999999999999999 8999999999
Q ss_pred eeEEeCC
Q 009052 321 PVKVRRP 327 (545)
Q Consensus 321 ~l~v~~~ 327 (545)
.|.|.++
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999864
No 325
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.4e-15 Score=118.31 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=67.7
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..+.++|||+|||+++|+++|+++|+.|+.|. .+.+..++.++|||||+|.+.++|.+|| .||+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~---------~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRAR---------IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEE---------EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEE---------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 34678999999999999999999999875321 2333345677899999999999999999 7999999999
Q ss_pred eeEEeCCCCCC
Q 009052 321 PVKVRRPSDYN 331 (545)
Q Consensus 321 ~l~v~~~~~~~ 331 (545)
.|.|.++....
T Consensus 83 ~l~V~~a~~~~ 93 (102)
T 2fc8_A 83 KVTLDWAKPKG 93 (102)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999976544
No 326
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.50 E-value=6.2e-15 Score=129.51 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=68.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+|+++|+++|.+||.|..+. ++.+..++.++|||||+|.+.++|.+|| .|||..|.|+.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIH------LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE------EEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4568999999999999999999999999875543 2222235567899999999999999999 89999999999
Q ss_pred eEEeCCCCC
Q 009052 322 VKVRRPSDY 330 (545)
Q Consensus 322 l~v~~~~~~ 330 (545)
|.|.++...
T Consensus 144 l~V~~a~~~ 152 (165)
T 1rk8_A 144 IQVDWCFVK 152 (165)
T ss_dssp CEEEESEEC
T ss_pred EEEEEecCC
Confidence 999987543
No 327
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.9e-15 Score=121.36 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=67.3
Q ss_pred cccceEEEcCCCCCCCHHHHH---HHHHHHHHhhcCCCCCCCCcEEEEEe---cCCCcEEEEEecCHHHHHHHH-HcCCc
Q 009052 243 RHARRVYVGGLPPTANEQSVA---TFFSQVMAAIGGNTAGPGDAVVNVYI---NHEKKFAFVEMRSVEEASNAM-ALDGI 315 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~---~~f~~~G~i~~~~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~a~-~l~g~ 315 (545)
...++|||+|||+++++++|. ++|.+||.|..+. ++.+..+ ..++|||||+|.+.++|.+|+ .|||.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~------i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVV------INNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEE------EECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEE------EecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 356799999999999999999 9999999865442 1111111 144589999999999999999 89999
Q ss_pred eecCceeEEeCCCCCC
Q 009052 316 IFEGAPVKVRRPSDYN 331 (545)
Q Consensus 316 ~~~g~~l~v~~~~~~~ 331 (545)
.|.|++|.|.++....
T Consensus 87 ~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 87 VVDGRTLKASLGTTKY 102 (111)
T ss_dssp EETTEEEEEESCCCCS
T ss_pred EECCEEEEEEeccccc
Confidence 9999999999987554
No 328
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1e-14 Score=120.21 Aligned_cols=80 Identities=25% Similarity=0.194 Sum_probs=67.4
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHh----hcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCcee
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAA----IGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIF 317 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i----~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~ 317 (545)
....++|||+|||+++|+++|+++|++||.| ..+. ++.+ .+++++|||||+|.+.++|.+||.+++..|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~------i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l 92 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL------FVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLL 92 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEE------EEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEE------EEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCee
Confidence 4567899999999999999999999999875 3332 2222 467789999999999999999996699999
Q ss_pred cCceeEEeCCC
Q 009052 318 EGAPVKVRRPS 328 (545)
Q Consensus 318 ~g~~l~v~~~~ 328 (545)
.|+.|.|..+.
T Consensus 93 ~gR~i~V~~a~ 103 (123)
T 2dha_A 93 GKRYIELFRST 103 (123)
T ss_dssp SSCEECCEEEC
T ss_pred CCeEEEEEECC
Confidence 99999997654
No 329
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=1.7e-15 Score=124.70 Aligned_cols=84 Identities=25% Similarity=0.279 Sum_probs=72.8
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhc--------CCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-Hc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIG--------GNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-AL 312 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~--------~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l 312 (545)
..+.++|||+|||+.+|+++|+++|+.||.|.. +. ++.+..++.++|||||+|.+.++|.+|+ .|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMIN------LYTDRETGKLKGEATVSFDDPPSAKAAIDWF 77 (116)
Confidence 346789999999999999999999999999876 43 3444456788999999999999999999 79
Q ss_pred CCceecCceeEEeCCCCCC
Q 009052 313 DGIIFEGAPVKVRRPSDYN 331 (545)
Q Consensus 313 ~g~~~~g~~l~v~~~~~~~ 331 (545)
|+..|.|+.|.|.++....
T Consensus 78 ~g~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 78 DGKEFSGNPIKVSFATRRA 96 (116)
Confidence 9999999999999876543
No 330
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=3.2e-14 Score=113.03 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=67.7
Q ss_pred ccccceEEEcCCCCCCCHHHHH----HHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009052 242 TRHARRVYVGGLPPTANEQSVA----TFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII 316 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~ 316 (545)
..+.++|||+|||+.+++++|+ ++|++||.|..+. -..++.++|||||+|.+.++|..|+ .|+|..
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~---------i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 75 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDIL---------VSRSLKMRGQAFVIFKEVSSATNALRSMQGFP 75 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEE---------CCHHHHHTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEE---------EEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCE
Confidence 3467899999999999999999 9999999754332 1134567899999999999999999 899999
Q ss_pred ecCceeEEeCCCCC
Q 009052 317 FEGAPVKVRRPSDY 330 (545)
Q Consensus 317 ~~g~~l~v~~~~~~ 330 (545)
|.|+.|.|.++...
T Consensus 76 ~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 76 FYDKPMRIQYAKTD 89 (97)
T ss_dssp ETTEECEEEECSSC
T ss_pred ECCcEEEEEEccCC
Confidence 99999999987654
No 331
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.50 E-value=3.2e-15 Score=123.35 Aligned_cols=77 Identities=22% Similarity=0.224 Sum_probs=63.5
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhh--cCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCc
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAI--GGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 320 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~--~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~ 320 (545)
...++|||+|||+++|+++|+++|+.|+ |+ .+. ++.+. .+.++|||||+|.+.++|.+||.+++..|.|+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~------i~~d~-~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR 111 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGIT------LPVDP-EGKITGEAFVQFASQELAEKALGKHKERIGHR 111 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEE------CCCCS-SSSSCSEEEEEESSTTHHHHHHTTTTCCBTTB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEE------EEECC-CCCCceEEEEEECCHHHHHHHHHHCCCEECCE
Confidence 4568899999999999999999999994 43 332 12222 26789999999999999999997788999999
Q ss_pred eeEEeCC
Q 009052 321 PVKVRRP 327 (545)
Q Consensus 321 ~l~v~~~ 327 (545)
.|.|..+
T Consensus 112 ~I~V~~a 118 (126)
T 2hgm_A 112 YIEVFKS 118 (126)
T ss_dssp CCCCEEE
T ss_pred EEEEEEC
Confidence 9999764
No 332
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=3.8e-14 Score=125.40 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=68.6
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|||+.+++++|+++|+.||.|..+. ++.+ .++.++|||||+|.+.++|.+|+ .||+..|.|++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~------i~~d-~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAA------VDYD-RSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEE------ECCC-TTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEC-CCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 4568999999999999999999999999876543 1112 25778999999999999999999 79999999999
Q ss_pred eEEeCCCC
Q 009052 322 VKVRRPSD 329 (545)
Q Consensus 322 l~v~~~~~ 329 (545)
|.|.++..
T Consensus 159 l~V~~a~~ 166 (177)
T 2f3j_A 159 MDIQLVAS 166 (177)
T ss_dssp CEEEEESS
T ss_pred EEEEEecC
Confidence 99998654
No 333
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.2e-13 Score=109.56 Aligned_cols=75 Identities=23% Similarity=0.347 Sum_probs=67.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|| ++|+++|+++|++||. |..+.+..++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGN------------IIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCC------------EEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 45689999996 8999999999999995 666667789999999999999999999 99999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 79 l~v~~a~~~~ 88 (97)
T 1x5p_A 79 LKVNIARKQP 88 (97)
T ss_dssp EEEECCSSCC
T ss_pred EEEEECCCCC
Confidence 9999976543
No 334
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.48 E-value=7.4e-15 Score=135.74 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=68.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHH--HhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCc
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVM--AAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGA 320 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G--~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~ 320 (545)
..++|||+|||+.+|+++|+++|+.|| .|+.+. ++.+..++.++|||||+|.+.++|.+|| .||+..|.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~------i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIK------FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEE------EEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 567999999999999999999999999 776654 3334456778999999999999999999 7999999999
Q ss_pred eeEEeCCCC
Q 009052 321 PVKVRRPSD 329 (545)
Q Consensus 321 ~l~v~~~~~ 329 (545)
.|.|.++..
T Consensus 141 ~l~V~~a~~ 149 (229)
T 3q2s_C 141 NPVVTPVNK 149 (229)
T ss_dssp CCEEEECCH
T ss_pred EeEEEECCC
Confidence 999998753
No 335
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-14 Score=118.96 Aligned_cols=80 Identities=15% Similarity=0.333 Sum_probs=67.0
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCcee---
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIF--- 317 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~--- 317 (545)
..+.++|||+|||+.+|+++|+++|..||.|..+. |.....+.++|||||+|.+.++|.+|+ .|||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~-------i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR-------ILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEE-------EEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE-------EEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 34668999999999999999999999999876554 222225677899999999999999999 7999999
Q ss_pred -----cCceeEEeCCC
Q 009052 318 -----EGAPVKVRRPS 328 (545)
Q Consensus 318 -----~g~~l~v~~~~ 328 (545)
.+++|.|.++.
T Consensus 95 ~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 95 PGVSAPTEPLLCKFSG 110 (114)
T ss_dssp TTSCCCSSCBEEEECC
T ss_pred ccccCCCCceeEEccC
Confidence 57778887765
No 336
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=109.10 Aligned_cols=77 Identities=22% Similarity=0.397 Sum_probs=64.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCc-EEEEEecCHHHHHHHHHcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK-FAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g-~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
...++|||+|||+++|+++|+++|..||.| ..+......| ||||+|.+.++|.+|+.|++..|.|+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v------------~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~ 73 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPV------------ASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR 73 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCE------------EEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCe------------EEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE
Confidence 356799999999999999999999999975 3333332222 999999999999999999999999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 74 l~V~~a~~~~ 83 (94)
T 2e5g_A 74 LRVRPREQKE 83 (94)
T ss_dssp CCCBCSCCSC
T ss_pred EEEEECCcCC
Confidence 9998765443
No 337
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=3e-14 Score=112.85 Aligned_cols=75 Identities=16% Similarity=0.281 Sum_probs=64.7
Q ss_pred ccccceEEEcCCCC-CCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 242 TRHARRVYVGGLPP-TANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 242 ~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
..+.++|||+|||+ .+|+++|+++|++||.|..+ .+ .+|||||+|.+.++|.+|+ .|+|..|.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v------------~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQI------------NI--KNAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEE------------EE--ETTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEE------------EE--eCCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 45688999999998 99999999999999976432 22 3899999999999999999 799999999
Q ss_pred ceeEEeCCCCC
Q 009052 320 APVKVRRPSDY 330 (545)
Q Consensus 320 ~~l~v~~~~~~ 330 (545)
+.|.|.++...
T Consensus 73 ~~l~V~~a~~~ 83 (96)
T 2kvi_A 73 KKLILEVSSSN 83 (96)
T ss_dssp TTBCEEEEECC
T ss_pred cEEEEEEcCcC
Confidence 99999987543
No 338
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=8.4e-14 Score=113.63 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=68.9
Q ss_pred CCeEEEcCCC--CCC---CHHHHHHHHHhcCCccEEEEeecCC----CCCcceEEEEEecChHHHHHHHHHhCCCccCCe
Q 009052 365 PDRIFVGGLP--YYF---TEAQIRELLESFGPLRGFDLVKDRE----TGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK 435 (545)
Q Consensus 365 ~~~l~v~nlp--~~~---~~~~l~~~f~~~G~i~~v~i~~~~~----~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~ 435 (545)
+++|+|.||- ..+ .+++|+++|++||.|.+|.|+.+.. ++.++|+|||+|.+.++|.+|+..|||..|+|+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4689999993 222 3689999999999999999998854 356789999999999999999999999999999
Q ss_pred EEEEEEc
Q 009052 436 TLTVRRA 442 (545)
Q Consensus 436 ~l~v~~a 442 (545)
.|.|.|+
T Consensus 100 ~i~v~~~ 106 (118)
T 3ue2_A 100 KVVAEVY 106 (118)
T ss_dssp ECEEEEE
T ss_pred EEEEEEc
Confidence 9999998
No 339
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=3.6e-15 Score=125.62 Aligned_cols=81 Identities=23% Similarity=0.206 Sum_probs=67.1
Q ss_pred hccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCc
Q 009052 241 ATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 320 (545)
Q Consensus 241 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~ 320 (545)
.....++|||+|||+++|+++|+++|++|| |+.+. ++.+ ..+.++|||||+|.+.++|++||.+|+..|.|+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~------i~~d-~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR 113 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH------IEIG-PDGRVTGEADVEFATHEEAVAAMSKDRANMQHR 113 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE------CCCS-SSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE------EEEC-CCCCCceEEEEEeCCHHHHHHHHhhCCCEECCE
Confidence 345678999999999999999999999999 54543 2223 237789999999999999999999999999999
Q ss_pred eeEEeCCCC
Q 009052 321 PVKVRRPSD 329 (545)
Q Consensus 321 ~l~v~~~~~ 329 (545)
.|.|..+..
T Consensus 114 ~i~V~~a~~ 122 (139)
T 2hgn_A 114 YIELFLNST 122 (139)
T ss_dssp CCCCEECCC
T ss_pred EEEEEECCC
Confidence 999987654
No 340
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.47 E-value=2.3e-14 Score=111.44 Aligned_cols=74 Identities=24% Similarity=0.347 Sum_probs=64.9
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
...++|||+|||+++++++|+++|++| .|..+ .+..++|||||+|.+.++|.+|+ .|||..+.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~------------~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 69 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYC------------YVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD 69 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCE------------EEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEE------------EEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 356799999999999999999999999 65433 22378999999999999999999 79999999999
Q ss_pred eEEeCCCC
Q 009052 322 VKVRRPSD 329 (545)
Q Consensus 322 l~v~~~~~ 329 (545)
|.|.++..
T Consensus 70 l~V~~a~~ 77 (88)
T 1wg1_A 70 LIVQLQPT 77 (88)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 99998654
No 341
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.47 E-value=5.4e-14 Score=142.42 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=72.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
+.++|||+|||+.+|+++|.++|..||.|+.|. ++.+..++.++|||||+|.+.++|.+|| .|||..|.|+.|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIH------MVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEE------eeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 457999999999999999999999999987665 3444457788999999999999999999 999999999999
Q ss_pred EEeCCCCCC
Q 009052 323 KVRRPSDYN 331 (545)
Q Consensus 323 ~v~~~~~~~ 331 (545)
.|.++....
T Consensus 175 ~V~~a~~~~ 183 (437)
T 3pgw_S 175 LVDVERGRT 183 (437)
T ss_pred EEEEeCCCC
Confidence 999886543
No 342
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.47 E-value=1.2e-13 Score=118.18 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=65.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecC--c
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEG--A 320 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g--~ 320 (545)
...+|||+||++.+|+++|+++|++||.|..+. +....++|||||+|.+.++|..|+ .|||..|.| +
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~----------i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~ 114 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII----------TFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACC 114 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEE----------EEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEE----------EEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCc
Confidence 446799999999999999999999999864321 223446789999999999999999 899999966 9
Q ss_pred eeEEeCCCCC
Q 009052 321 PVKVRRPSDY 330 (545)
Q Consensus 321 ~l~v~~~~~~ 330 (545)
.|+|.+++..
T Consensus 115 ~L~V~~Ak~~ 124 (164)
T 1sjr_A 115 TLRIDFSKLT 124 (164)
T ss_dssp CEEEEECSSS
T ss_pred EEEEEEecCC
Confidence 9999998754
No 343
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=8.1e-14 Score=127.71 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCC---------CHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCcc--
Q 009052 364 GPDRIFVGGLPYYF---------TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM-- 432 (545)
Q Consensus 364 ~~~~l~v~nlp~~~---------~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~-- 432 (545)
..++|||+||+..+ ++++|+++|++||.|+.|.|+.. +|||||+|.+.++|+.|+++|+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 34689999999998 79999999999999999999865 89999999999999999999999999
Q ss_pred ----------CCeEEEEEEcCCCC
Q 009052 433 ----------GDKTLTVRRANQGA 446 (545)
Q Consensus 433 ----------~g~~l~v~~a~~~~ 446 (545)
.|+.|.|.||....
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC---
T ss_pred cccccccccCCCCEEEEEEccCCC
Confidence 89999999996554
No 344
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.4e-13 Score=109.28 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCCCC-----------HHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCc
Q 009052 363 EGPDRIFVGGLPYYFT-----------EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIK 431 (545)
Q Consensus 363 ~~~~~l~v~nlp~~~~-----------~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~ 431 (545)
.+.++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4457899999944332 5899999999999999966 442 379999999999999999999999999
Q ss_pred cCCeEEEEEEcCCCC
Q 009052 432 MGDKTLTVRRANQGA 446 (545)
Q Consensus 432 ~~g~~l~v~~a~~~~ 446 (545)
|+|+.|.|.|+.+..
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999996654
No 345
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.46 E-value=6.1e-14 Score=114.16 Aligned_cols=73 Identities=23% Similarity=0.422 Sum_probs=65.0
Q ss_pred ccceEEEcCCCCC-CCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 244 HARRVYVGGLPPT-ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 244 ~~~~l~V~nLp~~-~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
..++|||+|||+. +|+++|+++|++||.|..+ .+ ++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v------------~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGC------------SV--HKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEE------------EE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEE------------EE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4579999999999 9999999999999976433 22 6899999999999999999 99999999999
Q ss_pred eEEeCCCCC
Q 009052 322 VKVRRPSDY 330 (545)
Q Consensus 322 l~v~~~~~~ 330 (545)
|.|.++...
T Consensus 92 l~V~~a~~~ 100 (110)
T 1wf1_A 92 LDINMAGEP 100 (110)
T ss_dssp CCEEESCCC
T ss_pred EEEEECCCC
Confidence 999987643
No 346
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=2e-13 Score=122.70 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=71.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCCC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 445 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 445 (545)
++|||+|||..+++++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..++ ..|+|+.|.|.++...
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 589999999999999999999999999999999985 68899999999999999999997664 5999999999998544
No 347
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.2e-14 Score=109.10 Aligned_cols=76 Identities=20% Similarity=0.402 Sum_probs=64.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcCC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 444 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 444 (545)
.++|||+|||..+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. +..+.|+.|.|.++.+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 468999999999999999999999999999999865 589999999999999754321 3455999999999976
Q ss_pred CCC
Q 009052 445 GAN 447 (545)
Q Consensus 445 ~~~ 447 (545)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 348
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.45 E-value=8.2e-15 Score=117.66 Aligned_cols=79 Identities=18% Similarity=0.321 Sum_probs=67.6
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
....++|||+|||+++|+++|+++|+.||.|..+. ++.+ .++.++|||||+|.+.++|.+|+. ++..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~-~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~ 77 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVK------IITD-RTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKK 77 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------EEEC-TTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE------EEEC-CCCCccceEEEEECCHHHHHHHHh-CCCeECCEE
Confidence 45678999999999999999999999999876553 2222 256678999999999999999999 999999999
Q ss_pred eEEeCCC
Q 009052 322 VKVRRPS 328 (545)
Q Consensus 322 l~v~~~~ 328 (545)
|.|.++.
T Consensus 78 l~v~~a~ 84 (102)
T 2xs2_A 78 LKLGPAI 84 (102)
T ss_dssp CEEEEEE
T ss_pred EEEEECC
Confidence 9998754
No 349
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=108.70 Aligned_cols=78 Identities=21% Similarity=0.271 Sum_probs=64.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
..++|||+|||+.+|+++|+++|..||.|..+ ..+......+.|||+|.+.++|.+|+ .|||..|.|++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~---------~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESC---------EQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEE---------EEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEE---------EEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 46799999999999999999999999964321 01223344566999999999999999 799999999999
Q ss_pred EEeCCCCC
Q 009052 323 KVRRPSDY 330 (545)
Q Consensus 323 ~v~~~~~~ 330 (545)
.|.++...
T Consensus 85 ~V~~a~~~ 92 (96)
T 2e44_A 85 KVAYIPDE 92 (96)
T ss_dssp EEEECCCC
T ss_pred EEEEcCcc
Confidence 99987654
No 350
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.45 E-value=2e-13 Score=117.84 Aligned_cols=76 Identities=28% Similarity=0.426 Sum_probs=66.6
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecC-CCcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH-EKKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
....++|||+|||+.+|+++|+++|++||.| ..+.+.. ++|||||+|.+.++|.+|+ .|||..|.|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPL------------RSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCE------------EEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCE------------EEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3457899999999999999999999999964 4444444 5999999999999999999 799999999
Q ss_pred ceeEEeCCCC
Q 009052 320 APVKVRRPSD 329 (545)
Q Consensus 320 ~~l~v~~~~~ 329 (545)
++|.|.++..
T Consensus 138 ~~l~v~~a~~ 147 (150)
T 2i2y_A 138 CRVRVELSNG 147 (150)
T ss_dssp SCCEEEECCC
T ss_pred eEEEEEEcCC
Confidence 9999998754
No 351
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.43 E-value=1.3e-13 Score=113.01 Aligned_cols=69 Identities=25% Similarity=0.341 Sum_probs=58.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
...++|||+|||+++|+++|+++|.+||. |..+.+... |||||+|.+.++|++|| .||+..|.|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSC------------EEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 35689999999999999999999999996 455555444 99999999999999999 79999999998
Q ss_pred eEE
Q 009052 322 VKV 324 (545)
Q Consensus 322 l~v 324 (545)
|+|
T Consensus 81 ~~~ 83 (115)
T 3beg_B 81 GET 83 (115)
T ss_dssp SCC
T ss_pred eee
Confidence 333
No 352
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=7.2e-14 Score=111.79 Aligned_cols=72 Identities=13% Similarity=0.262 Sum_probs=62.3
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEE
Q 009052 370 VGGLPYYFTEAQIRELL------------ESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 437 (545)
Q Consensus 370 v~nlp~~~~~~~l~~~f------------~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l 437 (545)
+.||+..+++++|++.| ++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566666776666555 999999999999885 57889999999999999999999999999999999
Q ss_pred EEEEc
Q 009052 438 TVRRA 442 (545)
Q Consensus 438 ~v~~a 442 (545)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99997
No 353
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.42 E-value=2.4e-13 Score=111.92 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=64.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcE-EEEEecCHHHHHHHH-HcCCceecC--
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKF-AFVEMRSVEEASNAM-ALDGIIFEG-- 319 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~-afV~F~~~~~A~~a~-~l~g~~~~g-- 319 (545)
.--.|||+||++.+|+++|+++|++||.|..+. + ....+|| |||+|.+.++|..|+ .|||..|.|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~-------i----~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~ 95 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII-------T----FTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC 95 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEE-------E----EEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEE-------E----EcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence 445788999999999999999999999865432 1 1235787 999999999999999 999999998
Q ss_pred ceeEEeCCCCC
Q 009052 320 APVKVRRPSDY 330 (545)
Q Consensus 320 ~~l~v~~~~~~ 330 (545)
+.|+|.+++..
T Consensus 96 ~~LrI~~ak~~ 106 (130)
T 3zzy_A 96 CTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecCCC
Confidence 89999987654
No 354
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=4.4e-13 Score=109.95 Aligned_cols=73 Identities=19% Similarity=0.067 Sum_probs=61.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcE-EEEEecCHHHHHHHH-HcCCceecC--ce
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKF-AFVEMRSVEEASNAM-ALDGIIFEG--AP 321 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~-afV~F~~~~~A~~a~-~l~g~~~~g--~~ 321 (545)
..|||+||++.+|+++|+++|++||.|..+. +....|| |||+|.+.++|..|+ .|||..|.| ++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~------------i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIV------------IFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEE------------EEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEE------------EEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 3578999999999999999999999865432 2112486 999999999999999 899999988 68
Q ss_pred eEEeCCCCC
Q 009052 322 VKVRRPSDY 330 (545)
Q Consensus 322 l~v~~~~~~ 330 (545)
|+|.+++..
T Consensus 94 l~V~~Ak~~ 102 (124)
T 2e5i_A 94 LKIEYARPT 102 (124)
T ss_dssp EEEECCSCS
T ss_pred EEEEEecCC
Confidence 999987654
No 355
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=113.02 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=58.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe---cCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI---NHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
...++|||+|||+++|+++|+++|++||.|. +. .+.+..+ +.++|||||+|.+.++|++|| .|+ .++
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~------~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~ 76 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VD------WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EED 76 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EE------CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EE------EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcC
Confidence 4578999999999999999999999999874 22 1111222 578999999999999999999 773 356
Q ss_pred CceeEEeC
Q 009052 319 GAPVKVRR 326 (545)
Q Consensus 319 g~~l~v~~ 326 (545)
|+.|.+..
T Consensus 77 G~~~~~~~ 84 (114)
T 2dnl_A 77 GKLYLCVS 84 (114)
T ss_dssp TEEEEEEC
T ss_pred CcEEEecc
Confidence 66665554
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.39 E-value=3.1e-13 Score=111.53 Aligned_cols=74 Identities=24% Similarity=0.342 Sum_probs=65.3
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~ 321 (545)
.+.++|||+|| ++|+++|+++|+.||.|. .+.+..++|||||+|.+.++|.+|+ .|+|..|.|+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~------------~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII------------DLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCS------------CEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEE------------EEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 46789999996 699999999999999754 3344589999999999999999999 89999999999
Q ss_pred eEEeCCCCC
Q 009052 322 VKVRRPSDY 330 (545)
Q Consensus 322 l~v~~~~~~ 330 (545)
|.|.++...
T Consensus 103 l~V~~a~~~ 111 (121)
T 2bz2_A 103 LKVNIARKQ 111 (121)
T ss_dssp CEEEECCSS
T ss_pred EEEEEeCCC
Confidence 999987654
No 357
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1e-13 Score=111.41 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=66.0
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecC----HHH----HHHHHH--
Q 009052 246 RRVYVGGL----PPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS----VEE----ASNAMA-- 311 (545)
Q Consensus 246 ~~l~V~nL----p~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~----~~~----A~~a~~-- 311 (545)
..|||+|| |+.+++.+|+++|+.||+|.++. .+.+..++.++|||||+|.+ +++ |.+|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~------li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~ 76 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFE------AFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKH 76 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEE------EEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 58999999 99999999999999999998887 67788889999999999996 433 777763
Q ss_pred -cCCceecCceeEEeCC
Q 009052 312 -LDGIIFEGAPVKVRRP 327 (545)
Q Consensus 312 -l~g~~~~g~~l~v~~~ 327 (545)
++|..|.|++|+|...
T Consensus 77 ~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 77 ESSGCFIMGFKFEVILN 93 (136)
T ss_dssp TTTCEEETTEEEEEEEC
T ss_pred hhcCCeecCcEEEEEEC
Confidence 7999999999999763
No 358
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=2e-12 Score=104.62 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=65.0
Q ss_pred CCCeEEEcCCCC--CC--------CHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccC
Q 009052 364 GPDRIFVGGLPY--YF--------TEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMG 433 (545)
Q Consensus 364 ~~~~l~v~nlp~--~~--------~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~ 433 (545)
++++|.|.||-. .. .+++|+++|++||.|.+|.|.++. ++|+|||+|.+.++|.+|+..|||.+|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 346899999932 21 136899999999999999997652 4899999999999999999999999999
Q ss_pred CeEEEEEEc
Q 009052 434 DKTLTVRRA 442 (545)
Q Consensus 434 g~~l~v~~a 442 (545)
|+.|.|.|+
T Consensus 82 GR~i~v~~~ 90 (114)
T 3s6e_A 82 GKMITAAYV 90 (114)
T ss_dssp TEECEEEEE
T ss_pred CEEEEEEEE
Confidence 999999998
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.37 E-value=2.2e-13 Score=122.33 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=68.9
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
....++|||+|||+++|+++|.++|++||.|..+. +.....+.++|||||+|.+.++|.+|+.+.+..|.|+.
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-------i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~ 178 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ-------MRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 178 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEE-------EEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEE
T ss_pred ccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEE-------EEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 34678999999999999999999999999875543 22222366789999999999999999976677999999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.+..++.
T Consensus 179 l~V~~~~~y~ 188 (193)
T 2voo_A 179 LLILFKDDYF 188 (193)
T ss_dssp CEEEETTTC-
T ss_pred EEEEEhHHHH
Confidence 9999887764
No 360
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.37 E-value=8.8e-13 Score=102.44 Aligned_cols=76 Identities=22% Similarity=0.403 Sum_probs=57.1
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEec-CCCcEEEEEecCHHHHHHHHHcCCceecCc
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYIN-HEKKFAFVEMRSVEEASNAMALDGIIFEGA 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~a~~l~g~~~~g~ 320 (545)
..+..+|||+|||+++|+++|+++|++||.|. .+.+. .++|||||+|.+.++|.++... ...+.|+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~------------~v~i~~~srGfaFV~F~~~~~A~~~~~~-~~~~~g~ 74 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVV------------DVFIPKPFRAFAFVTFADDKVAQSLCGE-DLIIKGI 74 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEE------------EEECCSSCCSEEEEEESCHHHHHHHTTC-EEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEE------------EEEEeeCCCCEEEEEECCHHHHHHHcCC-CcccCCE
Confidence 34678999999999999999999999999754 33332 3799999999999999843221 3345699
Q ss_pred eeEEeCCCCC
Q 009052 321 PVKVRRPSDY 330 (545)
Q Consensus 321 ~l~v~~~~~~ 330 (545)
.|.|.++...
T Consensus 75 ~v~v~~a~~k 84 (89)
T 3d2w_A 75 SVHISNAEPK 84 (89)
T ss_dssp EEEEEECC--
T ss_pred EEEEEEcCCC
Confidence 9999886543
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.34 E-value=8.2e-13 Score=121.04 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=67.8
Q ss_pred ccccceEEEcCCCCCC---------CHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-H
Q 009052 242 TRHARRVYVGGLPPTA---------NEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-A 311 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~---------te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~ 311 (545)
....++|||+||+..+ ++++|+++|++||. |..+.+..++|||||+|.+.++|+.|+ +
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~------------I~~v~v~~~kG~AFV~F~~~~~Ae~A~~a 198 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGD------------IDRIRYVESKNCGFVKFKYQANAEFAKEA 198 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSC------------EEEEEEEGGGTEEEEEESSHHHHHHHHHH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCC------------EEEEEEECCCCEEEEEeCCHHHHHHHHHH
Confidence 3467899999999998 79999999999996 555666678999999999999999999 9
Q ss_pred cCCcee------------cCceeEEeCCCCCC
Q 009052 312 LDGIIF------------EGAPVKVRRPSDYN 331 (545)
Q Consensus 312 l~g~~~------------~g~~l~v~~~~~~~ 331 (545)
|+|..| .|+.|.|.|+....
T Consensus 199 m~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 199 MSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp HTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred hCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 999999 89999999987543
No 362
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=8.4e-13 Score=102.60 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=61.4
Q ss_pred cccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe-cCCCcEEEEEecCHHHHHHHHHcCCceecCce
Q 009052 243 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI-NHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 321 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~ 321 (545)
.+.++|||+|||+++|+++|+++|++||.|..+ .+ ..++|||||+|.+.++|++|+.. ...+.|+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v------------~i~~~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~ 69 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDV------------FIPKPFRAFAFVTFADDQIAQSLCGE-DLIIKGIS 69 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEE------------ECCSSCCSCCEEECSCHHHHHHTTTC-EEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEE------------EEecCCCCEEEEEECCHHHHHHHhcC-CceeCCEE
Confidence 356899999999999999999999999976443 22 23799999999999999875532 45679999
Q ss_pred eEEeCCCCCC
Q 009052 322 VKVRRPSDYN 331 (545)
Q Consensus 322 l~v~~~~~~~ 331 (545)
|.|.++....
T Consensus 70 l~v~~a~~~~ 79 (88)
T 1wf0_A 70 VHISNAEPKH 79 (88)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999876543
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.3e-11 Score=97.28 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=63.0
Q ss_pred CeEEEcCCC-------CCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEE
Q 009052 366 DRIFVGGLP-------YYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 438 (545)
Q Consensus 366 ~~l~v~nlp-------~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~ 438 (545)
.+|.|.-.. ..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|..|+..+++ +.|+.|.
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 356665543 4689999999999999999999973 5699999999999999999988655 6799999
Q ss_pred EEEcCCCCC
Q 009052 439 VRRANQGAN 447 (545)
Q Consensus 439 v~~a~~~~~ 447 (545)
|.|+.....
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999976653
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.30 E-value=1.6e-12 Score=104.09 Aligned_cols=66 Identities=32% Similarity=0.435 Sum_probs=60.4
Q ss_pred CCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-----------cCCceEEEEeCCCCCcCccccc
Q 009052 475 SVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-----------FCYKESGLIYTDRRLHNPQFVY 540 (545)
Q Consensus 475 ~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v-----------~~~g~afV~F~~~e~A~a~~~~ 540 (545)
..|++||.|.||++++++.++.+|++++++|+++|++||.|++| .++|+|||+|.+.++|.+|+..
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ 78 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQG 78 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999 1479999999999999777643
No 365
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.28 E-value=2e-12 Score=103.42 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=64.6
Q ss_pred cccceEEEcCCCC-----CCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEE-E-ecCCCcEEEEEecCHHHHHHHH-HcCC
Q 009052 243 RHARRVYVGGLPP-----TANEQSVATFFSQVMAAIGGNTAGPGDAVVNV-Y-INHEKKFAFVEMRSVEEASNAM-ALDG 314 (545)
Q Consensus 243 ~~~~~l~V~nLp~-----~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~-~-~~~~~g~afV~F~~~~~A~~a~-~l~g 314 (545)
.++++|+|.||.. +-++++|++.|++||.|..+. |... . .+.++|||||+|.+.++|.+|+ .|||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~-------i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCV-------IFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEE-------EEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEE-------EecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence 4678999999963 237899999999999876653 2211 1 2467999999999999999999 8999
Q ss_pred ceecCceeEEeCCC
Q 009052 315 IIFEGAPVKVRRPS 328 (545)
Q Consensus 315 ~~~~g~~l~v~~~~ 328 (545)
..|.|+.|.|.++.
T Consensus 79 ~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 79 RYFGGRVVKACFYN 92 (105)
T ss_dssp CEETTEECEEEECC
T ss_pred CEECCcEEEEEEcC
Confidence 99999999998864
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=1e-11 Score=120.08 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=65.5
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCcc---CCe-
Q 009052 362 LEGPDRIFVGG--LPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKM---GDK- 435 (545)
Q Consensus 362 ~~~~~~l~v~n--lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~---~g~- 435 (545)
..++.+|||+| |+..+++++|+++|++||.|..|.++. ++|||||+|.+.++|++|++.|||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34556899999 578999999999999999999988754 379999999999999999999999987 344
Q ss_pred -EEEEEEcC
Q 009052 436 -TLTVRRAN 443 (545)
Q Consensus 436 -~l~v~~a~ 443 (545)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67888874
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.25 E-value=3e-12 Score=103.65 Aligned_cols=67 Identities=9% Similarity=-0.039 Sum_probs=61.1
Q ss_pred CCCCceeEEecCCCCcccCCChHHHHHHHHHHHHHHhccCCceee-----cCCceEEEEeCCCCCcCccccc
Q 009052 474 GSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFAFCSPT-----FCYKESGLIYTDRRLHNPQFVY 540 (545)
Q Consensus 474 ~~~~~~~~~l~n~~~~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v-----~~~g~afV~F~~~e~A~a~~~~ 540 (545)
.+.+++||.|.||++++++.++++|.+++++|+++|++||.|++| ..+|+|||+|.+.++|.+|+..
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~ 74 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNA 74 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999 4589999999999999776643
No 368
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=2.4e-11 Score=98.87 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=64.0
Q ss_pred cccceEEEcCCCCCCC-----------HHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-
Q 009052 243 RHARRVYVGGLPPTAN-----------EQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM- 310 (545)
Q Consensus 243 ~~~~~l~V~nLp~~~t-----------e~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~- 310 (545)
.++++|+|.||....+ +++|+++|++||.|..+ .+....++|||||+|.+.++|.+|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v----------~i~~~~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKL----------LLFDRHPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEE----------EEETTCTTCEEEEECSCHHHHHHHHH
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEE----------EEecCCCCEEEEEEECCHHHHHHHHH
Confidence 4578999999954432 68999999999987543 2223347999999999999999999
Q ss_pred HcCCceecCceeEEeCCCCC
Q 009052 311 ALDGIIFEGAPVKVRRPSDY 330 (545)
Q Consensus 311 ~l~g~~~~g~~l~v~~~~~~ 330 (545)
.|||..|.|++|.|.++...
T Consensus 83 ~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 83 TLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HSTTCEETTEECEEEECCSC
T ss_pred HcCCCEECCcEEEEEEeCCC
Confidence 99999999999999987543
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.11 E-value=9.9e-11 Score=113.25 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=62.9
Q ss_pred ccccceEEEcC--CCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 242 TRHARRVYVGG--LPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 242 ~~~~~~l~V~n--Lp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
..++++|||+| |+..+|+++|+++|++||. |..+.+..++|||||+|.+.++|++|+ .|||..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~------------V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSC------------EEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45778999999 5789999999999999996 555666678999999999999999999 99999873
Q ss_pred ---Cc--eeEEeCC
Q 009052 319 ---GA--PVKVRRP 327 (545)
Q Consensus 319 ---g~--~l~v~~~ 327 (545)
|+ +|.|.+.
T Consensus 83 ~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 83 DDLGQKITLYLNFV 96 (345)
T ss_dssp CTTSCEEECEEEEC
T ss_pred cccCCceEEEEEEe
Confidence 44 5777664
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.09 E-value=5.9e-12 Score=100.61 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=55.7
Q ss_pred EcCCCCCCCHHHHHHHH------------HHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCce
Q 009052 250 VGGLPPTANEQSVATFF------------SQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGII 316 (545)
Q Consensus 250 V~nLp~~~te~~l~~~f------------~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~ 316 (545)
+.|||..+++++|++.| ++||.|..+. |.....+.++|||||+|.+.++|.+|+ .|||..
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~-------i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~ 92 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMN-------VCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRW 92 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE-------ECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEE-------EEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCE
Confidence 56777777887777666 9999866543 221123457899999999999999999 899999
Q ss_pred ecCceeEEeCC
Q 009052 317 FEGAPVKVRRP 327 (545)
Q Consensus 317 ~~g~~l~v~~~ 327 (545)
+.|++|.|.++
T Consensus 93 ~~Gr~i~v~~s 103 (104)
T 1jmt_A 93 FNGQPIHAELS 103 (104)
T ss_dssp ETTEECCEEEC
T ss_pred ECCEEEEEEEc
Confidence 99999999764
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.05 E-value=8.3e-11 Score=95.81 Aligned_cols=79 Identities=18% Similarity=0.070 Sum_probs=63.5
Q ss_pred cccceEEEcCCCC--CC---CHHHHHHHHHHHHHhhcCCCCCCCCcEEEEE----ecCCCcEEEEEecCHHHHHHHH-Hc
Q 009052 243 RHARRVYVGGLPP--TA---NEQSVATFFSQVMAAIGGNTAGPGDAVVNVY----INHEKKFAFVEMRSVEEASNAM-AL 312 (545)
Q Consensus 243 ~~~~~l~V~nLp~--~~---te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~----~~~~~g~afV~F~~~~~A~~a~-~l 312 (545)
.++++|+|.||-. ++ -++||++.|++||.|.++. ++.+.. ++.++|||||+|.++++|.+|+ .|
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~------I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L 91 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVI------IYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 91 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEE------EEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEE------EeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH
Confidence 4789999999942 22 4789999999999987764 222222 1345799999999999999999 99
Q ss_pred CCceecCceeEEeCC
Q 009052 313 DGIIFEGAPVKVRRP 327 (545)
Q Consensus 313 ~g~~~~g~~l~v~~~ 327 (545)
||..|.|+.|.|.+.
T Consensus 92 nGr~f~GR~i~v~~~ 106 (118)
T 3ue2_A 92 NGRWFAGRKVVAEVY 106 (118)
T ss_dssp TTCEETTEECEEEEE
T ss_pred CCCEECCcEEEEEEc
Confidence 999999999999874
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-09 Score=85.55 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=57.5
Q ss_pred cceEEEcCCC-------CCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe-cCCCcEEEEEecCHHHHHHHH-HcCCc
Q 009052 245 ARRVYVGGLP-------PTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI-NHEKKFAFVEMRSVEEASNAM-ALDGI 315 (545)
Q Consensus 245 ~~~l~V~nLp-------~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~a~-~l~g~ 315 (545)
..+|.|.-.. ..+|+++|+++|++||.|.. +.+ +.++|||||+|.+.++|..|+ .++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~------------v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~-- 75 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLN------------LVLSSKKPGTAVVEFATVKAAELAVQNEV-- 75 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEE------------EEEESSSSSEEEEEESCHHHHHHHHHTCC--
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEE------------EEEccCCCCEEEEEECCHHHHHHHHHhcC--
Confidence 3456666654 46899999999999997543 332 578999999999999999999 544
Q ss_pred eecCceeEEeCCCCCC
Q 009052 316 IFEGAPVKVRRPSDYN 331 (545)
Q Consensus 316 ~~~g~~l~v~~~~~~~ 331 (545)
.+.|++|.|.|+....
T Consensus 76 ~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 76 GLVDNPLKISWLEGQP 91 (100)
T ss_dssp BCSSSBCEEECSSCCC
T ss_pred CCCCCeEEEEEccCCC
Confidence 4689999999976543
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=9e-10 Score=88.90 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecC-hHHHHHHHHHhC--CCccCCeEEE
Q 009052 363 EGPDRIFVGGLPYY-FTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQD-LSVTDIACAALN--GIKMGDKTLT 438 (545)
Q Consensus 363 ~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~e~A~~A~~~l~--g~~~~g~~l~ 438 (545)
...+.|+|+||+.. +++++|+++|+.||.|..|.+..+.. .|||+|.+ ..+|..|+..|| |..|+|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 34468999999999 99999999999999999999988742 69999999 899999999995 8889999988
Q ss_pred EEEc
Q 009052 439 VRRA 442 (545)
Q Consensus 439 v~~a 442 (545)
+...
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8876
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1.1e-09 Score=82.33 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=60.2
Q ss_pred eEEEcCCCC----CCCH----HHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEE
Q 009052 367 RIFVGGLPY----YFTE----AQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 438 (545)
Q Consensus 367 ~l~v~nlp~----~~~~----~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~ 438 (545)
+|+|.-.+. ++.. .+|.+.|++||.|..++|+.+ .+||+|.+.++|.+||. |||..++|+.|+
T Consensus 9 tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 9 TVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp EEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred eEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 677766652 3333 678999999999999999887 28999999999999997 999999999999
Q ss_pred EEEcCCCC
Q 009052 439 VRRANQGA 446 (545)
Q Consensus 439 v~~a~~~~ 446 (545)
|+++.+.-
T Consensus 80 V~lkt~dW 87 (91)
T 2dnr_A 80 IALKSPSG 87 (91)
T ss_dssp EEECCCSS
T ss_pred EEeCCCCc
Confidence 99997654
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.95 E-value=1.9e-09 Score=99.44 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHhcCCccEEEEeecC----CCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEcC
Q 009052 377 FTEAQIRELLESFGPLRGFDLVKDR----ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRAN 443 (545)
Q Consensus 377 ~~~~~l~~~f~~~G~i~~v~i~~~~----~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 443 (545)
-.+++|.+.|++||.|..|.|+.+. .++.++|++||+|.+.++|.+|+..|||++|+|+.|.|.|+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4568999999999999999998553 345889999999999999999999999999999999999983
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=8.1e-09 Score=77.97 Aligned_cols=69 Identities=10% Similarity=0.161 Sum_probs=59.0
Q ss_pred CeEEEcCCCCC-----CCH----HHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeE
Q 009052 366 DRIFVGGLPYY-----FTE----AQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKT 436 (545)
Q Consensus 366 ~~l~v~nlp~~-----~~~----~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~ 436 (545)
.+|+|.-++.. +.. .+|.+.|+.||.|..++|+.+ -+||+|.+.++|.+||. |||..++|+.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 38888877643 222 578999999999999999987 29999999999999997 9999999999
Q ss_pred EEEEEcC
Q 009052 437 LTVRRAN 443 (545)
Q Consensus 437 l~v~~a~ 443 (545)
|+|++..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9998853
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1.8e-08 Score=81.23 Aligned_cols=72 Identities=10% Similarity=0.058 Sum_probs=62.3
Q ss_pred cccceEEEcCCCCC-CCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecC-HHHHHHHH-Hc--CCcee
Q 009052 243 RHARRVYVGGLPPT-ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS-VEEASNAM-AL--DGIIF 317 (545)
Q Consensus 243 ~~~~~l~V~nLp~~-~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~-~~~A~~a~-~l--~g~~~ 317 (545)
...+.|||+||++. ++.++|+++|+.||. |..+.+......|||.|.+ ..+|..|+ ++ ++..|
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~------------V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGE------------IKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCC------------EEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCC------------EEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 35678999999999 999999999999995 6777777777789999999 89999999 77 47889
Q ss_pred cCceeEEeC
Q 009052 318 EGAPVKVRR 326 (545)
Q Consensus 318 ~g~~l~v~~ 326 (545)
.|..+.+..
T Consensus 84 ~g~~~~~ev 92 (121)
T 1owx_A 84 RNKEVTWEV 92 (121)
T ss_dssp TSSSEEEEE
T ss_pred eCcEEEEEE
Confidence 998888754
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.2e-07 Score=72.87 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=66.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc-----CCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEE
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESF-----GPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 439 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v 439 (545)
.++|-|-|||..+++..|+.+.+++ |.|+.|.+..+ -|=|+|+|.+...|-+|.-+|+|..|.|++|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 4689999999999999999999999 99999999988 456999999999999999999999999999999
Q ss_pred EEc
Q 009052 440 RRA 442 (545)
Q Consensus 440 ~~a 442 (545)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 754
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=4.8e-08 Score=73.49 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=56.6
Q ss_pred ccceEEEcCCCC----CCCH----HHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCc
Q 009052 244 HARRVYVGGLPP----TANE----QSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGI 315 (545)
Q Consensus 244 ~~~~l~V~nLp~----~~te----~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~ 315 (545)
+..||+|.-++. .+-. .+|.+.|.+||. |+.+.+-..+ +||+|.+.++|.+|+.|||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~------------Vi~vr~~~d~--~fVtF~d~~sAlaAi~mnG~ 71 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGE------------VILIRFVEDK--MWVTFLEGSSALNVLSLNGK 71 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCC------------EEEEEECSSS--EEEEESSHHHHHHGGGGTTC
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCC------------eEEEEEecCC--EEEEECChHHHHHHHhcCCe
Confidence 345788888762 3333 678899999996 4444444433 89999999999999999999
Q ss_pred eecCceeEEeCCCCC
Q 009052 316 IFEGAPVKVRRPSDY 330 (545)
Q Consensus 316 ~~~g~~l~v~~~~~~ 330 (545)
.++|+.|+|...+..
T Consensus 72 ~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 72 ELLNRTITIALKSPS 86 (91)
T ss_dssp EETTEEEEEEECCCS
T ss_pred EeCCeEEEEEeCCCC
Confidence 999999999876543
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=1.2e-07 Score=71.69 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=54.8
Q ss_pred ccceEEEcCCCCC-----CCH----HHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCC
Q 009052 244 HARRVYVGGLPPT-----ANE----QSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDG 314 (545)
Q Consensus 244 ~~~~l~V~nLp~~-----~te----~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g 314 (545)
+..||+|.-++.. +-. .+|.+.|.+||.|+ .+.+-..+ +||+|.+.++|.+|+.|+|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi------------lvr~v~d~--~fVtF~d~~sAl~AI~ldG 79 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIV------------LVRINQGQ--MLVTFADSHSALSVLDVDG 79 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCS------------EEEEETTE--EEEECSCSHHHHHHHHGGG
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEE------------EEEEecCc--EEEEEcChHHHHHHHhcCC
Confidence 4568999988743 222 56899999999653 23333333 9999999999999999999
Q ss_pred ceecCceeEEeCC
Q 009052 315 IIFEGAPVKVRRP 327 (545)
Q Consensus 315 ~~~~g~~l~v~~~ 327 (545)
..++|+.|+|.+.
T Consensus 80 ~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 80 MKVKGRAVKISGP 92 (95)
T ss_dssp SEETTEEEEEECC
T ss_pred eeeCCeEEEEecc
Confidence 9999999999864
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.34 E-value=2e-06 Score=66.06 Aligned_cols=76 Identities=12% Similarity=0.197 Sum_probs=65.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceecCcee
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPV 322 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l 322 (545)
..++|-|-|||..++...|+.++..+-.|. .+.+..+.+-..-+-|+|+|.+...|-+|. .|+|..|.|++|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~-------~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHIN-------EKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCC-------TTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccC-------ccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 468999999999999999999999992221 113667778888999999999999999999 999999999999
Q ss_pred EEeC
Q 009052 323 KVRR 326 (545)
Q Consensus 323 ~v~~ 326 (545)
++.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9963
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=8.5e-06 Score=62.28 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=61.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecCceeE
Q 009052 244 HARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 323 (545)
Q Consensus 244 ~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g~~l~ 323 (545)
..++|.|.|||+.+.++.|.-+|+.-= ..-|+.|..+.... +-|+|+|.+.+.|+..|+...+.|.+.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~r-------rsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRR-------RSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTT-------TTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCC-------cCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 356899999999999999999999720 01245677777765 899999999999999998778899999999
Q ss_pred EeC
Q 009052 324 VRR 326 (545)
Q Consensus 324 v~~ 326 (545)
|..
T Consensus 78 V~P 80 (104)
T 2dhx_A 78 LRP 80 (104)
T ss_dssp EEE
T ss_pred EEc
Confidence 964
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.12 E-value=1e-06 Score=81.00 Aligned_cols=66 Identities=21% Similarity=0.070 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe----cCCCcEEEEEecCHHHHHHHH-HcCCceecCceeEEeCCC
Q 009052 257 ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYI----NHEKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPS 328 (545)
Q Consensus 257 ~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~----~~~~g~afV~F~~~~~A~~a~-~l~g~~~~g~~l~v~~~~ 328 (545)
-.+++|.+.|++||.|.++. ++.+... +.++|++||+|.+.++|.+|+ .|||..+.|++|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~------v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVI------IYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEE------EEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEE------EecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 46789999999999876653 1222222 267899999999999999999 999999999999998753
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=1.2e-05 Score=61.83 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=63.8
Q ss_pred CCCeEEEcCCCCCCC-----HHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEE
Q 009052 364 GPDRIFVGGLPYYFT-----EAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 438 (545)
Q Consensus 364 ~~~~l~v~nlp~~~~-----~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~ 438 (545)
.+++|+|.||+..+- .+.++++|..|+.+....+.+. -.-+.|.|.+.++|.+|...||+..|.|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 456899999987652 2678999999999988887765 23578999999999999999999999999999
Q ss_pred EEEcC
Q 009052 439 VRRAN 443 (545)
Q Consensus 439 v~~a~ 443 (545)
|.|+.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99995
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.56 E-value=0.00022 Score=54.04 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=56.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCC--cceEEEEEecChHHHHHHHHHhCCCcc
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN--SKGYAFCVYQDLSVTDIACAALNGIKM 432 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~--~~g~afV~f~~~e~A~~A~~~l~g~~~ 432 (545)
++|.|++||+.+|++++.+.++.+..+....+...+.+.. .-.-|||.|.+.+++..-.+.++|..|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4899999999999999999999998887777766644322 235699999999999999999999987
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.39 E-value=0.00051 Score=54.43 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=58.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCC-eEEEEEEcC
Q 009052 365 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD-KTLTVRRAN 443 (545)
Q Consensus 365 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g-~~l~v~~a~ 443 (545)
...|.|-+.|+.. ...|...|++||.|+....... .....|.|.+..+|++|| ..||..|+| -.|-|..+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEECC
Confidence 3579999999884 6778899999999998887221 458999999999999999 669999974 778888863
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.37 E-value=0.001 Score=50.13 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=45.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN 428 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~ 428 (545)
..++| ++|.++...||.++|+.||.| .|..+.|. -|||.|.+.+.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45667 999999999999999999955 46666662 79999999999999998763
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.24 E-value=0.0012 Score=50.76 Aligned_cols=72 Identities=11% Similarity=0.032 Sum_probs=60.0
Q ss_pred cceEEEcCCCCCC-C----HHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 245 ARRVYVGGLPPTA-N----EQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 245 ~~~l~V~nLp~~~-t----e~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
..+|+|.||+..+ . .+.++++|..|++ +.....-++-.-..|.|.++++|.+|- .|++..++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~------------~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~ 72 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDK------------DTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFL 72 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCS------------SCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEET
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCc------------CcceeecCcceEEEEEeCChHHHHHHHHHhccceec
Confidence 4589999999876 3 2567889999875 344566677778899999999999999 99999999
Q ss_pred CceeEEeCCC
Q 009052 319 GAPVKVRRPS 328 (545)
Q Consensus 319 g~~l~v~~~~ 328 (545)
|+.|+|-++.
T Consensus 73 g~~~r~YFgq 82 (104)
T 1wey_A 73 GKEMKLYFAQ 82 (104)
T ss_dssp TEECEEECCC
T ss_pred CceeEEEecC
Confidence 9999998876
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.0044 Score=47.36 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=57.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHh-----cCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEE
Q 009052 366 DRIFVGGLPYYFTEAQIRELLES-----FGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 440 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~-----~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~ 440 (545)
.+|.|.|||..+.++.|.-.|+. -|.|..|.... +-|+|+|.+.+.|+..| +-..+.|.|..|.|.
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL-~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVL-AQADHELHGAQLSLR 79 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHH-TCSCCBSSSSBCEEE
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHh-cCCcceecCeEEEEE
Confidence 58999999999999999999997 24588887754 36899999999999887 334678899999997
Q ss_pred EcC
Q 009052 441 RAN 443 (545)
Q Consensus 441 ~a~ 443 (545)
...
T Consensus 80 P~~ 82 (104)
T 2dhx_A 80 PAP 82 (104)
T ss_dssp ECC
T ss_pred cCC
Confidence 753
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.12 E-value=0.0016 Score=51.58 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=58.5
Q ss_pred ccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHHHcCCceecC-c
Q 009052 242 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEG-A 320 (545)
Q Consensus 242 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~~l~g~~~~g-~ 320 (545)
....+.|.|-|.|+.. ...|...|++||.| +............|.|.+..+|++||..||..|.| .
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~I------------v~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~ 87 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNI------------LKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESI 87 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCE------------EEEEECSSSSEEEEEESSHHHHHHHHTTTTCEETTTE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcE------------EEeccCCCCCeEEEEeCCHHHHHHHHHhCCeEecCCE
Confidence 3456789999999985 67789999999964 44444556789999999999999999999999985 5
Q ss_pred eeEEeCC
Q 009052 321 PVKVRRP 327 (545)
Q Consensus 321 ~l~v~~~ 327 (545)
.|-|.+.
T Consensus 88 mIGV~p~ 94 (119)
T 1wwh_A 88 MIGVKPC 94 (119)
T ss_dssp ECEEEEC
T ss_pred EEEEEEC
Confidence 5666543
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.79 E-value=0.0021 Score=48.69 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=44.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhC
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN 428 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~ 428 (545)
.++| ++|.++...||.++|+.||.| .|..+.+. -|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4566 999999999999999999944 56666652 79999999999999998774
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.64 E-value=0.0018 Score=49.25 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=53.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCC--cceEEEEEecChHHHHHHHHHhCCCccC---C--eEEE
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN--SKGYAFCVYQDLSVTDIACAALNGIKMG---D--KTLT 438 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~--~~g~afV~f~~~e~A~~A~~~l~g~~~~---g--~~l~ 438 (545)
-+|.|+.||+.+|++++.+.++.+-.+....+...+.+.. .-.-|||.|.+.++...-.+.++|..|- | -.-.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 4799999999999999888777654443333333222211 1135899999999999999999998872 2 2344
Q ss_pred EEEc
Q 009052 439 VRRA 442 (545)
Q Consensus 439 v~~a 442 (545)
|.||
T Consensus 90 VE~A 93 (97)
T 2l08_A 90 VEFA 93 (97)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6665
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.40 E-value=0.0063 Score=48.84 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=55.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccE-EEEeecC------------CCC-CcceEEEEEecChHHHHHHHHHhCCCc
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRG-FDLVKDR------------ETG-NSKGYAFCVYQDLSVTDIACAALNGIK 431 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-v~i~~~~------------~~g-~~~g~afV~f~~~e~A~~A~~~l~g~~ 431 (545)
..|.|-+.|+.. ...|.+.|++||.|.. +.+.... ..+ ...+...|+|++..+|.+|| ..||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 368888897764 4567788999999876 3222100 000 12457899999999999999 669999
Q ss_pred cCCeEEEEEEc
Q 009052 432 MGDKTLTVRRA 442 (545)
Q Consensus 432 ~~g~~l~v~~a 442 (545)
|+|..|-|.++
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99999999887
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.29 E-value=0.0042 Score=46.94 Aligned_cols=64 Identities=17% Similarity=0.337 Sum_probs=47.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCC------CcEEEEEecCHHHHHHHH-HcCCceec
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE------KKFAFVEMRSVEEASNAM-ALDGIIFE 318 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~------~g~afV~F~~~~~A~~a~-~l~g~~~~ 318 (545)
++|.|++||+.+||+++.+.+..+..+ ......-|+. -.-|||.|.+.+++.... .++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~----------d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEH----------DYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCE----------EEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccc----------eEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 589999999999999998888765421 1111222221 247999999999999999 89998875
Q ss_pred C
Q 009052 319 G 319 (545)
Q Consensus 319 g 319 (545)
+
T Consensus 72 D 72 (91)
T 1uw4_A 72 D 72 (91)
T ss_dssp C
T ss_pred c
Confidence 4
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.18 E-value=0.0053 Score=46.31 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=41.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-Hc
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-AL 312 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l 312 (545)
+.++| ++|+.+.-.||.++|+.||.| .|.-+ +-..|||.|.+++.|..|| .+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv----------~I~Wi----dDTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI----------QISWI----DDTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC----------CCEEE----ETTEEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE----------EEEEE----cCCeEEEEecCHHHHHHHHHhc
Confidence 45566 999999999999999999843 23333 2568999999999999999 44
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.80 E-value=0.0069 Score=48.63 Aligned_cols=82 Identities=15% Similarity=0.232 Sum_probs=55.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEE------EEec--CCCcEEEEEecCHHHHHHHHHcCCce
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVN------VYIN--HEKKFAFVEMRSVEEASNAMALDGII 316 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~------~~~~--~~~g~afV~F~~~~~A~~a~~l~g~~ 316 (545)
...|.|-|.|+.. ...|.+.|++||.|+.-........... .... ...+...|.|.+..+|.+||..||..
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 4568899997665 4668889999999865321110000000 0000 13567899999999999999999999
Q ss_pred ecCceeEEeCC
Q 009052 317 FEGAPVKVRRP 327 (545)
Q Consensus 317 ~~g~~l~v~~~ 327 (545)
|.|.-|-|.+.
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99987777654
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.55 E-value=0.0041 Score=47.05 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=41.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcC
Q 009052 246 RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD 313 (545)
Q Consensus 246 ~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~ 313 (545)
+.++| ++|+.+.-.||.++|+.||.| .|.-+ +-..|||.|.+++.|..|| .+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv----------~I~Wi----dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI----------QISWI----DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE----------EEEEE----ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE----------EEEEE----cCCeEEEEecCHHHHHHHHHhcc
Confidence 34556 999999999999999999843 12222 2568999999999999999 443
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.76 E-value=0.0089 Score=59.79 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=45.3
Q ss_pred hhccccceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCc-EEEEEecCHHHHHHHHHcCCceec
Q 009052 240 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK-FAFVEMRSVEEASNAMALDGIIFE 318 (545)
Q Consensus 240 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g-~afV~F~~~~~A~~a~~l~g~~~~ 318 (545)
-..+..++|+|. .|..+++.+|.++|++||.|. ++....++| ||.|||.+.+++..++...+....
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~------------~~~~~~~~g~~~~vef~~~~~~~~~~~~~~~p~~ 114 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGPIN------------NHFFYESFGLYAVVEFCQKESIGSLQNGTHTPXX 114 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCC------------CEEEECSSSEEEEEECC---CCHHHHSSCCCCCC
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcc------------eEEEEccCCeEEEEEeCCHHHHHHHHhccCCCcc
Confidence 345677899998 799999999999999999753 444445555 999999999999988844444443
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.48 E-value=0.023 Score=56.85 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=41.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHH
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 425 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~ 425 (545)
+.|+|. .|..+++.+|.+.|++||.|.++.+..+. .-||.|||.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 579997 79999999999999999999999998762 3599999999999886653
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.56 E-value=0.039 Score=41.87 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=44.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCC-CcEEEEEecCHHHHHHHH-HcCCceecC
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE-KKFAFVEMRSVEEASNAM-ALDGIIFEG 319 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~-~g~afV~F~~~~~A~~a~-~l~g~~~~g 319 (545)
+-+|.|+.||+.+||+++.+.+..+=.+.-.. .-+|.. ..+.+ -.-|||.|.+.++..... .++|..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~-fv~G~~----s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFE-FFAADL----SLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECC-CCCCCS----SSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEE-EeCCcc----CCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 45799999999999999776665431100000 000000 01111 246999999999999999 899988754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.78 E-value=2.5 Score=43.02 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=44.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhC
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN 428 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~ 428 (545)
..++|+ +|..+...+|.++|+.||.| .|..+.+ ..|||.|.+.+.|..++..++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 456665 99999999999999999954 5655544 279999999999999998885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=69.86 E-value=4.8 Score=40.98 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=42.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcEEEEEecCCCcEEEEEecCHHHHHHHH-HcC
Q 009052 245 ARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM-ALD 313 (545)
Q Consensus 245 ~~~l~V~nLp~~~te~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~a~-~l~ 313 (545)
...++|+ +|..+...+|.+.|+.||.+ .|. -.+...|||.|.+.+.|..++ .++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v----------~V~----widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI----------QIS----WIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC----------EEE----ECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE----------EEE----EEcCCeEEEEECCHHHHHHHHHHHH
Confidence 3466666 99999999999999999842 121 335678999999999999999 654
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=60.71 E-value=45 Score=24.20 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=44.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHh
Q 009052 366 DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 427 (545)
Q Consensus 366 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l 427 (545)
+-|.|-|+|..+-..++.-.....|---.|..+ .|.|.|.|.+.++...|+..|
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 568899999999998888877888876666664 356999999999999999877
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=39.46 E-value=46 Score=23.37 Aligned_cols=58 Identities=7% Similarity=0.087 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHhcCC-----ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCCccCCeEEEEEEc
Q 009052 376 YFTEAQIRELLESFGP-----LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 442 (545)
Q Consensus 376 ~~~~~~l~~~f~~~G~-----i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 442 (545)
.+...+|..++..-+. |-.|.|... |.||+-... .|..++..|++..+.|+.+.|..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 3555677766665444 444555433 789988765 467889999999999999999876
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=37.80 E-value=58 Score=27.37 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=35.2
Q ss_pred eEEEcCCCCC---------CCHHHHHHHH--HhcCCccEEEEeecCCCCCcceEEEEEecChH
Q 009052 367 RIFVGGLPYY---------FTEAQIRELL--ESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS 418 (545)
Q Consensus 367 ~l~v~nlp~~---------~~~~~l~~~f--~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e 418 (545)
+++|.|+|.. .....|++.| ..|.++. |..+..+ .-+.|+|.|+|..--
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCCh
Confidence 6788899872 3347899977 8999876 5444442 235889999998743
No 406
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=35.15 E-value=70 Score=22.81 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=40.8
Q ss_pred CcEEEEEecCHHHHHHHH----HcCCceecCceeEEeCCCCCCCCccccCCCCCCCCCcccccccCCCCCCCCCCCCCeE
Q 009052 293 KKFAFVEMRSVEEASNAM----ALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRI 368 (545)
Q Consensus 293 ~g~afV~F~~~~~A~~a~----~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 368 (545)
.-|.++.|....++.+-+ .+|...|.--.|++..+..|. .+
T Consensus 5 G~Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r~YE-----------------------------------~m 49 (77)
T 3zzp_A 5 GYTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRYE-----------------------------------VN 49 (77)
T ss_dssp TTEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTTEEE-----------------------------------EE
T ss_pred EEEEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCCceE-----------------------------------EE
Confidence 348899998766555554 467777755555554443332 56
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCC
Q 009052 369 FVGGLPYYFTEAQIRELLESFGP 391 (545)
Q Consensus 369 ~v~nlp~~~~~~~l~~~f~~~G~ 391 (545)
|| |.+.++++++..+.++|-.
T Consensus 50 ~I--l~P~l~ee~~~~~vek~~~ 70 (77)
T 3zzp_A 50 IV--LNPNLDQSQLQNEKEIIQR 70 (77)
T ss_dssp EE--ECTTCCHHHHHHHHHHHHH
T ss_pred EE--ECCCCCHHHHHHHHHHHHH
Confidence 76 5677899888888877643
No 407
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=31.21 E-value=40 Score=25.84 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=26.5
Q ss_pred ccEEEEeecCCCCCcceEEEEEecChHHHHHHHHHhCCC
Q 009052 392 LRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI 430 (545)
Q Consensus 392 i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~l~g~ 430 (545)
|.+|..+.. -+||.|||=.+..+...|+..+.+.
T Consensus 41 I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 41 IKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred eEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 777776543 3899999999999999988766543
No 408
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=30.74 E-value=1.3e+02 Score=20.43 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=41.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCccEEEEeecCCCCCcceEEEEEecChHHHHHHHHH
Q 009052 367 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 426 (545)
Q Consensus 367 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~A~~A~~~ 426 (545)
++.|.+|.=.-....|...+.. ..|..+.+-.. .+.+.|.|.+.++...||..
T Consensus 8 ~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 8 VLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 6889999877788999999999 88888887544 56788999855566666654
No 409
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=25.23 E-value=1.1e+02 Score=24.84 Aligned_cols=67 Identities=10% Similarity=-0.019 Sum_probs=46.0
Q ss_pred hcCCCCCCceeEEecCCCC------cccCCChHHHHHHHHHHHHHHhccCCceee--------c------CCceEEEEeC
Q 009052 470 MLQPGSVPSKVVCLTQVVS------ADELKDDEEYEEILEDMRQEGGKFAFCSPT--------F------CYKESGLIYT 529 (545)
Q Consensus 470 ~~~~~~~~~~~~~l~n~~~------~~~l~~~~~~~~~~~~l~~~f~~fG~V~~v--------~------~~g~afV~F~ 529 (545)
.......|...|+|...=. ...+++.+.|..=.+.+...+.+||--.-+ . -...+.|+|.
T Consensus 17 ~~~~~~~pv~MlNLlrf~~~a~y~dg~~vtd~e~y~~Y~~~~~~~l~~~GG~~l~rG~~~~~lEG~~~e~~~~~viieFP 96 (143)
T 3hhl_A 17 RANDREGPIHMLNLVRLRPRAAYPDGRETTGAEAYAAYGRDSGPVSERLGGXVVWQGQFELMLIGPQDEHWDHVFIAEYP 96 (143)
T ss_dssp HHCCCSSCEEEEEEEEECSBCCCTTCCCCBHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEESCTTCCCSEEEEEEES
T ss_pred HhCCCCCCEEEEehhcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEeecCCceeEECCCCCCCCeEEEEECC
Confidence 3344556677777765511 123567788888888889999999875555 1 2457899999
Q ss_pred CCCCcCc
Q 009052 530 DRRLHNP 536 (545)
Q Consensus 530 ~~e~A~a 536 (545)
+.+.|.+
T Consensus 97 S~~aa~a 103 (143)
T 3hhl_A 97 SVAAFVE 103 (143)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9988854
No 410
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=25.00 E-value=47 Score=25.02 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHHHHHHHhccCCceee-----------cCCceEEEEeCCCCCcCcc
Q 009052 492 LKDDEEYEEILEDMRQEGGKFAFCSPT-----------FCYKESGLIYTDRRLHNPQ 537 (545)
Q Consensus 492 l~~~~~~~~~~~~l~~~f~~fG~V~~v-----------~~~g~afV~F~~~e~A~a~ 537 (545)
+++.+.|.+=.+.+...+.+||--.-+ .....+.|+|.+.++|.+-
T Consensus 14 v~d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~~~~eG~~~~~~viieFpS~~aa~~~ 70 (99)
T 2fiu_A 14 VRDSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDC 70 (99)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCEEEEESCCEEEEESCCCSEEEEEEESSHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHHHcCcEEEEECCCceEEecCCcCeEEEEECCCHHHHHHH
Confidence 567778888888889999999865555 2235678899999988553
No 411
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=21.41 E-value=65 Score=23.91 Aligned_cols=46 Identities=13% Similarity=-0.013 Sum_probs=34.3
Q ss_pred CCChHHHHHHHHHHHHHHhccCCceee-------c----CCceEEEEeCCCCCcCcc
Q 009052 492 LKDDEEYEEILEDMRQEGGKFAFCSPT-------F----CYKESGLIYTDRRLHNPQ 537 (545)
Q Consensus 492 l~~~~~~~~~~~~l~~~f~~fG~V~~v-------~----~~g~afV~F~~~e~A~a~ 537 (545)
+++.+.|.+=.+.+...+.+||--.-+ . ....+.|+|.+.+.|.+-
T Consensus 13 v~d~e~y~~Y~~~~~~~l~~~GG~~l~rg~~~~lEG~~~~~~~viieFps~~aa~a~ 69 (94)
T 3lo3_A 13 PKDAEKLQQYGARVASTLAKYSGEVLVKGSVEQLHGKFEHKAQVILEFPSREDAYNW 69 (94)
T ss_dssp ECCHHHHHHHHHHHHHHHHTTTCEEEEEEECEEEESCCCCSEEEEEEESSHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHHHHcCCEEEEEcccccccCCCCCCeEEEEECCCHHHHHHH
Confidence 567778888888899999999744333 1 345689999999988653
No 412
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=20.68 E-value=80 Score=23.96 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHh-ccCCceee-cCCceE-EEEeCCCCCcCccccccc
Q 009052 499 EEILEDMRQEGG-KFAFCSPT-FCYKES-GLIYTDRRLHNPQFVYFY 542 (545)
Q Consensus 499 ~~~~~~l~~~f~-~fG~V~~v-~~~g~a-fV~F~~~e~A~a~~~~~~ 542 (545)
.++...|+++|. +||..=.| .+..|+ ||++.. ..|+|||
T Consensus 49 kdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~-----~~fiyF~ 90 (102)
T 1yo3_A 49 KDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHET-----KNFIYFY 90 (102)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCC-----CEEEEEE
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeC-----CcEEEEE
Confidence 456678998885 79998888 444443 555543 3455554
Done!