Query 009053
Match_columns 545
No_of_seqs 437 out of 4317
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 19:50:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4.1E-52 8.9E-57 482.4 41.5 496 1-538 541-1100(1153)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-29 2.7E-34 293.6 22.8 302 11-314 85-397 (968)
3 PLN00113 leucine-rich repeat r 100.0 1.9E-29 4.2E-34 292.0 22.1 324 9-336 108-470 (968)
4 PLN03210 Resistant to P. syrin 99.9 2E-23 4.4E-28 243.1 24.7 290 13-314 582-910 (1153)
5 KOG0444 Cytoskeletal regulator 99.9 6.9E-27 1.5E-31 236.8 -5.5 315 15-337 28-381 (1255)
6 KOG4194 Membrane glycoprotein 99.9 4.5E-24 9.8E-29 215.3 6.6 319 6-330 89-428 (873)
7 KOG0444 Cytoskeletal regulator 99.9 3.4E-25 7.3E-30 224.6 -4.6 295 12-313 48-378 (1255)
8 KOG4194 Membrane glycoprotein 99.9 7.5E-24 1.6E-28 213.7 1.4 297 7-306 137-448 (873)
9 KOG0472 Leucine-rich repeat pr 99.9 1.2E-24 2.7E-29 210.8 -8.6 315 5-330 170-540 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 1E-23 2.2E-28 204.4 -9.1 218 12-235 61-284 (565)
11 KOG0618 Serine/threonine phosp 99.8 1.1E-20 2.4E-25 200.4 -1.6 314 11-330 37-488 (1081)
12 PRK15387 E3 ubiquitin-protein 99.8 8.1E-18 1.8E-22 183.7 18.0 263 19-315 201-463 (788)
13 PRK15387 E3 ubiquitin-protein 99.7 5.8E-17 1.3E-21 177.1 16.6 244 19-293 222-465 (788)
14 PRK15370 E3 ubiquitin-protein 99.7 3.6E-17 7.9E-22 179.6 12.7 244 45-309 179-427 (754)
15 KOG0618 Serine/threonine phosp 99.7 1.6E-18 3.4E-23 184.3 -3.5 283 15-311 195-490 (1081)
16 PRK15370 E3 ubiquitin-protein 99.7 4.2E-16 9.2E-21 171.3 12.5 245 19-287 178-428 (754)
17 cd00116 LRR_RI Leucine-rich re 99.5 3.5E-15 7.7E-20 150.8 -0.5 249 62-328 21-317 (319)
18 KOG0617 Ras suppressor protein 99.5 1.6E-15 3.4E-20 131.8 -4.6 176 149-331 25-203 (264)
19 cd00116 LRR_RI Leucine-rich re 99.4 1.7E-14 3.7E-19 145.8 0.3 243 69-330 3-290 (319)
20 KOG0617 Ras suppressor protein 99.3 5.2E-14 1.1E-18 122.5 -4.8 165 60-249 29-195 (264)
21 KOG4237 Extracellular matrix p 99.3 1.4E-13 3E-18 134.3 -5.4 115 52-166 54-173 (498)
22 KOG4237 Extracellular matrix p 99.2 4.3E-13 9.2E-18 131.0 -7.5 265 22-308 70-357 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.1 6.1E-11 1.3E-15 132.9 5.4 291 45-337 524-848 (889)
24 KOG4658 Apoptotic ATPase [Sign 98.9 9.3E-10 2E-14 123.4 5.7 250 103-356 516-785 (889)
25 COG4886 Leucine-rich repeat (L 98.9 3.8E-09 8.1E-14 110.2 8.1 193 69-267 98-294 (394)
26 KOG3207 Beta-tubulin folding c 98.9 2.5E-10 5.5E-15 113.3 -0.9 205 84-309 118-338 (505)
27 COG4886 Leucine-rich repeat (L 98.9 2.8E-09 6.1E-14 111.2 6.0 194 48-245 97-296 (394)
28 KOG0532 Leucine-rich repeat (L 98.7 5.9E-10 1.3E-14 114.0 -3.4 206 26-236 57-270 (722)
29 KOG1259 Nischarin, modulator o 98.7 4.5E-09 9.8E-14 99.7 2.3 124 181-309 286-411 (490)
30 KOG0532 Leucine-rich repeat (L 98.7 5.3E-10 1.2E-14 114.3 -4.3 193 68-266 54-250 (722)
31 KOG3207 Beta-tubulin folding c 98.7 3.1E-09 6.8E-14 105.7 0.0 198 16-239 118-339 (505)
32 PRK15386 type III secretion pr 98.6 1.1E-07 2.3E-12 96.6 9.1 157 181-359 54-218 (426)
33 PF14580 LRR_9: Leucine-rich r 98.6 2.6E-08 5.6E-13 90.4 4.2 61 248-309 62-125 (175)
34 PLN03150 hypothetical protein; 98.6 8.5E-08 1.8E-12 105.3 8.4 106 228-333 420-530 (623)
35 PF14580 LRR_9: Leucine-rich r 98.6 2.6E-08 5.7E-13 90.3 3.2 119 45-166 20-149 (175)
36 KOG1909 Ran GTPase-activating 98.6 2.5E-09 5.5E-14 103.6 -3.9 186 81-309 86-310 (382)
37 KOG1259 Nischarin, modulator o 98.6 1.7E-08 3.6E-13 95.9 1.3 204 79-291 206-416 (490)
38 KOG4341 F-box protein containi 98.5 2.4E-09 5.2E-14 105.9 -5.9 273 87-359 138-444 (483)
39 KOG1909 Ran GTPase-activating 98.5 4.7E-09 1E-13 101.8 -4.0 130 199-330 154-310 (382)
40 PLN03150 hypothetical protein; 98.5 2E-07 4.4E-12 102.3 7.8 113 203-315 419-533 (623)
41 KOG2120 SCF ubiquitin ligase, 98.5 2.7E-09 5.8E-14 101.2 -7.2 155 66-238 187-350 (419)
42 KOG4341 F-box protein containi 98.3 1.3E-08 2.8E-13 100.8 -5.8 273 20-312 139-441 (483)
43 PRK15386 type III secretion pr 98.3 3.1E-06 6.8E-11 86.1 9.8 62 108-174 50-111 (426)
44 KOG2120 SCF ubiquitin ligase, 98.2 2.5E-08 5.5E-13 94.6 -7.6 177 111-308 186-374 (419)
45 PF13855 LRR_8: Leucine rich r 98.1 3.6E-06 7.7E-11 62.5 3.7 55 252-307 3-59 (61)
46 PF13855 LRR_8: Leucine rich r 98.1 4.5E-06 9.8E-11 61.9 4.0 39 245-283 20-59 (61)
47 KOG0531 Protein phosphatase 1, 98.1 6.3E-07 1.4E-11 94.0 -1.0 231 45-283 73-315 (414)
48 KOG0531 Protein phosphatase 1, 97.9 7.5E-07 1.6E-11 93.5 -2.9 32 252-283 234-265 (414)
49 KOG2982 Uncharacterized conser 97.9 2.3E-06 4.9E-11 81.6 -0.2 99 46-144 47-156 (418)
50 KOG1859 Leucine-rich repeat pr 97.9 1.4E-07 3E-12 99.4 -9.3 123 181-309 166-291 (1096)
51 KOG1859 Leucine-rich repeat pr 97.6 2.6E-06 5.6E-11 90.1 -5.6 90 74-166 174-263 (1096)
52 PF12799 LRR_4: Leucine Rich r 97.6 8.2E-05 1.8E-09 51.0 3.5 33 251-283 2-34 (44)
53 PF12799 LRR_4: Leucine Rich r 97.4 0.00018 4E-09 49.2 3.5 37 64-100 1-37 (44)
54 KOG1947 Leucine rich repeat pr 97.4 2.1E-05 4.5E-10 84.1 -2.3 143 201-359 268-419 (482)
55 KOG3665 ZYG-1-like serine/thre 97.2 0.00025 5.5E-09 78.2 3.7 126 181-308 124-261 (699)
56 KOG3665 ZYG-1-like serine/thre 97.2 0.00018 3.8E-09 79.5 2.4 58 60-118 144-203 (699)
57 KOG1947 Leucine rich repeat pr 97.2 3E-05 6.4E-10 82.9 -3.7 42 194-235 287-330 (482)
58 KOG4579 Leucine-rich repeat (L 97.1 2.9E-05 6.2E-10 66.0 -3.4 105 203-309 28-135 (177)
59 KOG1644 U2-associated snRNP A' 97.0 0.0014 3.1E-08 59.6 6.2 105 60-166 38-149 (233)
60 KOG1644 U2-associated snRNP A' 96.9 0.0021 4.5E-08 58.6 5.8 82 224-306 62-149 (233)
61 KOG2982 Uncharacterized conser 96.9 0.00036 7.9E-09 66.9 1.1 65 249-314 198-266 (418)
62 COG5238 RNA1 Ran GTPase-activa 96.5 0.00086 1.9E-08 63.6 1.0 39 83-121 88-131 (388)
63 COG5238 RNA1 Ran GTPase-activa 96.5 0.00093 2E-08 63.4 1.1 111 198-309 88-226 (388)
64 PF13306 LRR_5: Leucine rich r 96.4 0.016 3.4E-07 49.7 8.0 102 9-118 2-111 (129)
65 KOG4579 Leucine-rich repeat (L 96.0 0.00038 8.2E-09 59.4 -4.2 84 181-266 55-139 (177)
66 KOG2123 Uncharacterized conser 95.8 0.00029 6.3E-09 67.0 -6.0 72 45-116 42-123 (388)
67 KOG2739 Leucine-rich acidic nu 95.7 0.0048 1E-07 58.5 1.4 83 65-148 44-130 (260)
68 PF07725 LRR_3: Leucine Rich R 95.6 0.0076 1.7E-07 33.2 1.4 20 65-84 1-20 (20)
69 KOG2739 Leucine-rich acidic nu 95.4 0.013 2.9E-07 55.6 3.3 84 86-170 42-129 (260)
70 KOG2123 Uncharacterized conser 95.0 0.00092 2E-08 63.6 -5.5 65 84-150 38-104 (388)
71 PF13306 LRR_5: Leucine rich r 93.6 0.36 7.8E-06 41.1 7.9 72 45-118 13-89 (129)
72 PF00560 LRR_1: Leucine Rich R 92.5 0.052 1.1E-06 30.9 0.7 17 275-292 2-18 (22)
73 PF00560 LRR_1: Leucine Rich R 92.4 0.07 1.5E-06 30.3 1.1 20 65-84 1-20 (22)
74 PF13504 LRR_7: Leucine rich r 89.9 0.2 4.4E-06 26.5 1.3 9 275-283 3-11 (17)
75 KOG3864 Uncharacterized conser 85.1 0.13 2.7E-06 47.3 -2.1 35 272-306 150-185 (221)
76 KOG3864 Uncharacterized conser 84.6 0.62 1.3E-05 42.9 2.1 61 274-334 102-167 (221)
77 smart00369 LRR_TYP Leucine-ric 78.2 1.8 3.8E-05 25.5 1.8 16 251-266 3-18 (26)
78 smart00370 LRR Leucine-rich re 78.2 1.8 3.8E-05 25.5 1.8 16 251-266 3-18 (26)
79 KOG0473 Leucine-rich repeat pr 76.6 0.099 2.2E-06 48.9 -5.9 84 12-97 35-121 (326)
80 KOG4308 LRR-containing protein 65.8 0.044 9.5E-07 58.2 -12.4 114 196-309 166-302 (478)
81 KOG4308 LRR-containing protein 63.9 0.06 1.3E-06 57.2 -11.8 34 250-283 262-300 (478)
82 smart00364 LRR_BAC Leucine-ric 63.6 4.8 0.0001 23.9 1.3 18 64-81 2-19 (26)
83 smart00367 LRR_CC Leucine-rich 63.4 5.4 0.00012 23.4 1.6 12 298-309 3-14 (26)
84 KOG0473 Leucine-rich repeat pr 59.6 0.2 4.2E-06 47.0 -7.6 64 246-310 61-124 (326)
85 smart00365 LRR_SD22 Leucine-ri 52.9 11 0.00024 22.4 1.6 15 64-78 2-16 (26)
86 PF13516 LRR_6: Leucine Rich r 49.6 9.3 0.0002 21.8 1.0 10 111-120 3-12 (24)
87 smart00368 LRR_RI Leucine rich 36.1 26 0.00057 21.0 1.5 13 87-99 2-14 (28)
88 KOG3763 mRNA export factor TAP 22.2 46 0.00099 35.7 1.4 76 39-116 215-307 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.1e-52 Score=482.35 Aligned_cols=496 Identities=33% Similarity=0.517 Sum_probs=394.3
Q ss_pred CCCCCcccccChhhhhCCCCCcEEEeeCCC-------CccccCCcCCCCCCCccEEEeCCCCCCcc--cccccCccEEEc
Q 009053 1 MGKANSEIQINPYTFSKMTELRFLKFYGSE-------NKCMVSSLEGVPFTEVRYFEWHQYPLKTL--DIHAENLVSLKM 71 (545)
Q Consensus 1 ~s~~~~~~~~~~~~f~~m~~Lr~L~l~~~~-------~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L 71 (545)
|+++ +++++++.+|.+|++|++|+++.+. ...+|.++..+| .+||+|+|++|+++.+ .+.+.+|++|+|
T Consensus 541 ~~~~-~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp-~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L 618 (1153)
T PLN03210 541 IDEI-DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP-PKLRLLRWDKYPLRCMPSNFRPENLVKLQM 618 (1153)
T ss_pred cCcc-ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcC-cccEEEEecCCCCCCCCCcCCccCCcEEEC
Confidence 3556 5788999999999999999997642 356899999999 8999999999999999 788999999999
Q ss_pred CCCCCccccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccC
Q 009053 72 PGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLP 151 (545)
Q Consensus 72 ~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp 151 (545)
++++++.+|.+++.+++|+.|+|+++..++.+|+++.+++|+.|+|.+|..+..+|.+++.+++|+.|++++|..++.+|
T Consensus 619 ~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 619 QGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred cCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred CccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCcccc------------------------------CC
Q 009053 152 TSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSID------------------------------RL 201 (545)
Q Consensus 152 ~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~------------------------------~l 201 (545)
..+++++|+.|++++|..++.+|....+ |+.|++++|.+..+|..+. ..
T Consensus 699 ~~i~l~sL~~L~Lsgc~~L~~~p~~~~n-L~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 699 TGINLKSLYRLNLSGCSRLKSFPDISTN-ISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CcCCCCCCCEEeCCCCCCccccccccCC-cCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcc
Confidence 9889999999999999999999987665 9999999999998886431 12
Q ss_pred CCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCcc-CcCCCccCCCCCCCcEEec
Q 009053 202 SKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTA-IRRPPESLGQLSSLQILSL 280 (545)
Q Consensus 202 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L 280 (545)
++|+.|++++|.....+|..++++++|+.|++++|..++.+|..+ ++++|+.|++++|. +..+|.. .++|+.|+|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 467788888888888899999999999999999999888888776 78999999999874 4455542 468999999
Q ss_pred cCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCCC---CCccEEeccCCCCCCccCCcccC--------------Ccc
Q 009053 281 SDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPELP---CNLHDLDASGCTSLEALPASLSS--------------KFY 343 (545)
Q Consensus 281 ~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~~---~sL~~L~l~~c~~L~~l~~~~~~--------------~~~ 343 (545)
++| .++.+|.++..+++|+.|++++|+.+..+|..+ ++|+.+++++|.+|+.++..... ...
T Consensus 854 s~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~ 932 (1153)
T PLN03210 854 SRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPST 932 (1153)
T ss_pred CCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCch
Confidence 999 889999999999999999999999999998754 56788899999999877542210 011
Q ss_pred cEEEEcCCCCCChhhHHHHHHHHhhccccCCCceEEEEcCCCcccccccccCCCceee-eeCCCCCCCCCCCCCceeEEE
Q 009053 344 LSVDLSNCLKLDLSELSEIIKDRWMKQSYNYASCRGIYFPGDEILKLFRYQSMGSSVT-LETPPPPPPAPAGYNKLMGFA 422 (545)
Q Consensus 344 ~~l~l~~C~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~s~~-i~lp~~~~~~~~~~~~~~g~~ 422 (545)
..+.+.+|++|+..++ ..++. ....+++||.++|.||.||..|++++ |.+|+.|.. ..|.||+
T Consensus 933 ~~l~f~nC~~L~~~a~-------l~~~~----~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~-----~~~~~f~ 996 (1153)
T PLN03210 933 VCINFINCFNLDQEAL-------LQQQS----IFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPC-----QPFFRFR 996 (1153)
T ss_pred hccccccccCCCchhh-------hcccc----cceEEECCCccCchhccCCcccceeeeeccCCcccC-----CCccceE
Confidence 3467899999987553 11111 23467899999999999999999998 999999986 6799999
Q ss_pred EEEEEEecCCCC--CcceeEEEEecceeecCCCCCceeeeec---CCCCCCCCCcEEEEEeeccc-hhhHHHHhhccCCC
Q 009053 423 FCAVIAFSVPDH--HHYWKGYLYCDLKVKSEGSYGHLHSWYL---GEFSYLESDHVFLKIISYVE-ADSVFLRSYLSDSE 496 (545)
Q Consensus 423 ~c~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~sdh~~~~~~~~~~-~~~~~~~~~~~~~~ 496 (545)
+|+|+++..... ..+.+.|.| +|+++.+. .+.... ........+|+++|...... .|++.+ .
T Consensus 997 ~c~v~~~~~~~~~~~~~~~~~~c---~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~ 1064 (1153)
T PLN03210 997 ACAVVDSESFFIISVSFDIQVCC---RFIDRLGN--HFDSPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPL-------A 1064 (1153)
T ss_pred EEEEEecCccccCCCceeEEEEE---EEECCCCC--ccccCCCceeEeeeccccceEEecccccccccccch-------h
Confidence 999998776432 244566655 77766422 111000 00011234455444321110 000000 1
Q ss_pred ccccccceeEEEEEEEecCCCCcCceEEEeeecEEEeccCCC
Q 009053 497 DLVESFEEVYEVYFGIRCPHSQCLDCEVKKCGIDFVYAQDSR 538 (545)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~cg~~~~~~~~~~ 538 (545)
.+ .|++ ++|+|.++... ..++||+|||+++|+++..
T Consensus 1065 ~~--~~~~-~~~~f~~~~~~---~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1065 EL--NYDH-VDIQFRLTNKN---SQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred cc--CCce-eeEEEEEecCC---CCeEEEeeeEEEeccCCCc
Confidence 11 2666 88999987643 3479999999999966544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.2e-29 Score=293.61 Aligned_cols=302 Identities=19% Similarity=0.244 Sum_probs=225.9
Q ss_pred ChhhhhCCCCCcEEEeeCCCC-ccccCCcC-CCCCCCccEEEeCCCCCCcc--cccccCccEEEcCCCCCc-cccccccC
Q 009053 11 NPYTFSKMTELRFLKFYGSEN-KCMVSSLE-GVPFTEVRYFEWHQYPLKTL--DIHAENLVSLKMPGSKVK-QLWDDVQN 85 (545)
Q Consensus 11 ~~~~f~~m~~Lr~L~l~~~~~-~~l~~~l~-~l~~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~~~l~-~l~~~~~~ 85 (545)
.+.+|.+|++|+.|++++|.. +.+|.++. .+. +||+|++++|.+... ...+++|++|+|++|.+. .+|..++.
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~--~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS--SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCC--CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhc
Confidence 366899999999999998754 36786654 665 999999999988754 556789999999999887 67888899
Q ss_pred CCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEe
Q 009053 86 LVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLV 163 (545)
Q Consensus 86 l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~ 163 (545)
+++|+.|+|++|.+...+|. ++.+++|+.|++++|...+.+|..++.+++|++|++++|...+.+|..+ .+++|+.|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 99999999999988777775 8888999999999988877888888889999999998887777788777 788888888
Q ss_pred ecCCCCCCCCCccccCC--ccEEEcccccCc-ccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCC
Q 009053 164 LRGCSNLKNFPEISSSG--IHRLDLTHVGIK-ELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLK 240 (545)
Q Consensus 164 L~~c~~l~~~p~~~~~~--L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~ 240 (545)
+++|...+.+|...... |+.|++++|.+. .+|.++.++++|+.|++++|...+.+|..+..+++|+.|++++|...+
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 88887666666655444 788888888776 466777777777777777777777777777777777777777777766
Q ss_pred ccccccCCCCCCcEEEecCccCc-CCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccC
Q 009053 241 RLPDELGNLKALEELRVEGTAIR-RPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLP 314 (545)
Q Consensus 241 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip 314 (545)
.+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|+....+|
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC
Confidence 67777777777777777777665 556666666666666666663333445444444444444444444433333
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.9e-29 Score=291.99 Aligned_cols=324 Identities=22% Similarity=0.264 Sum_probs=183.5
Q ss_pred ccChhhhhCCCCCcEEEeeCCCCc-cccCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCc-ccccc
Q 009053 9 QINPYTFSKMTELRFLKFYGSENK-CMVSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVK-QLWDD 82 (545)
Q Consensus 9 ~~~~~~f~~m~~Lr~L~l~~~~~~-~l~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~-~l~~~ 82 (545)
.++...|.++++||+|++++|... .+|. ..++ +|++|++++|.+... ...+.+|++|+|++|.+. .+|..
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~--~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP--NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccCc--cccC--CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence 466677778899999998876432 3342 2344 677777777766533 345667777777777655 55666
Q ss_pred ccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc-CCcccc
Q 009053 83 VQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLK 160 (545)
Q Consensus 83 ~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~ 160 (545)
+.++++|++|+|++|.+...+|. ++.+++|+.|++++|...+.+|..++.+++|++|++++|...+.+|..+ .+++|+
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 66677777777777666655553 5666666666666666555666666666666666666665555555555 566666
Q ss_pred EEeecCCCCCCCCCccccCC--ccEEEcccccCc-ccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCC
Q 009053 161 RLVLRGCSNLKNFPEISSSG--IHRLDLTHVGIK-ELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCP 237 (545)
Q Consensus 161 ~L~L~~c~~l~~~p~~~~~~--L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~ 237 (545)
.|++++|...+.+|...... |+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.
T Consensus 264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 66666655444444433222 556666655554 344555555555555555555555555555555555555555555
Q ss_pred CCCccccccCCCCCCcEEEecCccCc-CCC------------------------ccCCCCCCCcEEeccCCcCCCcchhh
Q 009053 238 KLKRLPDELGNLKALEELRVEGTAIR-RPP------------------------ESLGQLSSLQILSLSDNSNLERAPES 292 (545)
Q Consensus 238 ~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp------------------------~~l~~l~~L~~L~L~~n~~~~~lp~~ 292 (545)
..+.+|..++.+++|+.|++++|.+. .+| ..++.+++|+.|++++|...+.+|..
T Consensus 344 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 55555555555555555555555443 233 33344444555555554222244444
Q ss_pred hcCCCCCCEEeccCCcCccccCC---CCCCccEEeccCCCCCCccCC
Q 009053 293 IRHLSKLTSLFISDCKMLQTLPE---LPCNLHDLDASGCTSLEALPA 336 (545)
Q Consensus 293 l~~l~~L~~L~L~~c~~l~~ip~---~~~sL~~L~l~~c~~L~~l~~ 336 (545)
+..+++|+.|++++|...+.+|. ..++|+.|++++|...+.+|.
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence 44455555555554444433332 234555555555544444443
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=2e-23 Score=243.09 Aligned_cols=290 Identities=29% Similarity=0.487 Sum_probs=239.9
Q ss_pred hhhhCC-CCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc---cccccCccEEEcCCCC-CccccccccCCC
Q 009053 13 YTFSKM-TELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL---DIHAENLVSLKMPGSK-VKQLWDDVQNLV 87 (545)
Q Consensus 13 ~~f~~m-~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~~~-l~~l~~~~~~l~ 87 (545)
..|..+ .+||.|.+.++....+|..+. . .+|+.|++.++.++.+ ...+++|+.|+|+++. ++.+|. +..++
T Consensus 582 ~~~~~lp~~Lr~L~~~~~~l~~lP~~f~-~--~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~ 657 (1153)
T PLN03210 582 EGFDYLPPKLRLLRWDKYPLRCMPSNFR-P--ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMAT 657 (1153)
T ss_pred cchhhcCcccEEEEecCCCCCCCCCcCC-c--cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCC
Confidence 345554 579999998887788887763 3 4899999999988887 5578899999998864 667764 77889
Q ss_pred CccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecC
Q 009053 88 NLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRG 166 (545)
Q Consensus 88 ~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~ 166 (545)
+|+.|+|++|..+..+|. +..+++|+.|++++|..++.+|..+ ++++|+.|++++|..++.+|.. ..+|+.|++++
T Consensus 658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~ 734 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDE 734 (1153)
T ss_pred cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCC
Confidence 999999999988888875 7888999999999999888888766 7889999999999877777643 34667777766
Q ss_pred CCCCCCCCccc--------------------------------cCCccEEEccccc-CcccCccccCCCCCCEEEecCCC
Q 009053 167 CSNLKNFPEIS--------------------------------SSGIHRLDLTHVG-IKELPSSIDRLSKLDTLKIHDCT 213 (545)
Q Consensus 167 c~~l~~~p~~~--------------------------------~~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~L~~~~ 213 (545)
+. ++.+|... ...|+.|++++|. +.++|.+++++++|+.|++++|.
T Consensus 735 n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 735 TA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred Cc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 54 34444211 1127888888874 56799999999999999999999
Q ss_pred CCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhh
Q 009053 214 SLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESI 293 (545)
Q Consensus 214 ~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l 293 (545)
.++.+|..+ .+++|+.|++++|..+..+|.. .++|+.|++++|.++++|..+..+++|+.|++++|..+..+|..+
T Consensus 814 ~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 814 NLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred CcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 999999876 7999999999999998888764 468999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEeccCCcCccccC
Q 009053 294 RHLSKLTSLFISDCKMLQTLP 314 (545)
Q Consensus 294 ~~l~~L~~L~L~~c~~l~~ip 314 (545)
..+++|+.+++++|..+..++
T Consensus 890 ~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 890 SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ccccCCCeeecCCCccccccc
Confidence 999999999999999887653
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=6.9e-27 Score=236.77 Aligned_cols=315 Identities=24% Similarity=0.335 Sum_probs=194.2
Q ss_pred hhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc---cccccCccEEEcCCCCCc--cccccccCCCCc
Q 009053 15 FSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL---DIHAENLVSLKMPGSKVK--QLWDDVQNLVNL 89 (545)
Q Consensus 15 f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~~~l~--~l~~~~~~l~~L 89 (545)
...|++++-|++.......+|+.+..+. +|+.|.+.+|.+.++ ...++.|+.+.++.|+++ .+|..+-++..|
T Consensus 28 v~qMt~~~WLkLnrt~L~~vPeEL~~lq--kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLEQVPEELSRLQ--KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred HHHhhheeEEEechhhhhhChHHHHHHh--hhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence 3456666666665544445565555554 666666666655555 444555555555555555 455555555555
Q ss_pred cEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccc-cCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecCC
Q 009053 90 KKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSI-QYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGC 167 (545)
Q Consensus 90 ~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i-~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c 167 (545)
..||||+|++......+..++|+-.|+|++| .+..+|.++ .+++.|-.|||++| .+..+|.-+ .+..|+.|.|+++
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCC
Confidence 5555555544333333455555555555543 233444332 34555555555553 344444444 4445555555544
Q ss_pred C------------------------C-CCCCCccccCC--ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccc
Q 009053 168 S------------------------N-LKNFPEISSSG--IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPS 220 (545)
Q Consensus 168 ~------------------------~-l~~~p~~~~~~--L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~ 220 (545)
+ . +..+|.....+ |..++++.|.+..+|..+-++++|+.|+|++|.. ..+..
T Consensus 184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-teL~~ 262 (1255)
T KOG0444|consen 184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI-TELNM 262 (1255)
T ss_pred hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce-eeeec
Confidence 3 1 23344433332 5556666666666666666666666666666443 22333
Q ss_pred cccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCc--CCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCC
Q 009053 221 SLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIR--RPPESLGQLSSLQILSLSDNSNLERAPESIRHLSK 298 (545)
Q Consensus 221 ~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~ 298 (545)
..+...+|++|+++.| .+..+|+.+..+++|+.|.+.+|++. .+|+.|+.+..|+.+..++| .++-+|+++..|.+
T Consensus 263 ~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~k 340 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVK 340 (1255)
T ss_pred cHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHH
Confidence 3344455666666654 35678888889999999999998876 88999999999999999999 89999999999999
Q ss_pred CCEEeccCCcCccccCC---CCCCccEEeccCCCCCCccCCc
Q 009053 299 LTSLFISDCKMLQTLPE---LPCNLHDLDASGCTSLEALPAS 337 (545)
Q Consensus 299 L~~L~L~~c~~l~~ip~---~~~sL~~L~l~~c~~L~~l~~~ 337 (545)
|+.|.|++|+ +-.+|+ +.+.|+.|++..++.|.--|.+
T Consensus 341 L~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 341 LQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred HHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 9999998765 455675 5678899999999888755543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=4.5e-24 Score=215.32 Aligned_cols=319 Identities=20% Similarity=0.197 Sum_probs=218.7
Q ss_pred cccccChhhhhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCccccc
Q 009053 6 SEIQINPYTFSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLWD 81 (545)
Q Consensus 6 ~~~~~~~~~f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~~ 81 (545)
+.-+++.+.|.++++|+.+++..|....+|....-.. +|+.|.+.+|.+.++ ....+.|+.|||+.|.|..++.
T Consensus 89 kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sg--hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~ 166 (873)
T KOG4194|consen 89 KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESG--HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK 166 (873)
T ss_pred ccccCcHHHHhcCCcceeeeeccchhhhccccccccc--ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccC
Confidence 4456778888888888888887776677776555554 788888888877777 5566778888888888887764
Q ss_pred -cccCCCCccEEEecCCCCCCCCC-CCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccC--CccCCc
Q 009053 82 -DVQNLVNLKKIDLWYSKLLTKLP-DLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLP--TSIQSK 157 (545)
Q Consensus 82 -~~~~l~~L~~LdLs~~~~~~~~p-~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp--~~~~l~ 157 (545)
.+..-.++++|+|++|.+...-. .|..+.+|..|.|+.|....--+.++.++++|+.|+|..|. +..+. ..-+++
T Consensus 167 ~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~ 245 (873)
T KOG4194|consen 167 PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLP 245 (873)
T ss_pred CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCch
Confidence 34455678888888887765443 37777788888888765444444556668888888887753 33331 212777
Q ss_pred cccEEeecCCCCCCCCCcc---ccCCccEEEcccccCcccC-ccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEE
Q 009053 158 YLKRLVLRGCSNLKNFPEI---SSSGIHRLDLTHVGIKELP-SSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEI 233 (545)
Q Consensus 158 ~L~~L~L~~c~~l~~~p~~---~~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 233 (545)
+|+.|.+..+. +..+.+. ....+++|+|..|++.++. .++..++.|+.|++++|.....-+.+....++|+.|+|
T Consensus 246 Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 246 SLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 88888777643 2222221 1112778888888877764 35667788888888887766655666677778888888
Q ss_pred eCCCCCCccccccCCCCCCcEEEecCccCcCCC-ccCCCCCCCcEEeccCCcCCC----cchhhhcCCCCCCEEeccCCc
Q 009053 234 IYCPKLKRLPDELGNLKALEELRVEGTAIRRPP-ESLGQLSSLQILSLSDNSNLE----RAPESIRHLSKLTSLFISDCK 308 (545)
Q Consensus 234 s~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~----~lp~~l~~l~~L~~L~L~~c~ 308 (545)
++|....--+..+..+..|++|.|+.|.+..+- ..+.++++|+.|||++| .+. .-...+..+++|++|.+.+|+
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCce
Confidence 887766666667777778888888888777553 35567778888888887 443 222346678888888888765
Q ss_pred CccccCC----CCCCccEEeccCCCC
Q 009053 309 MLQTLPE----LPCNLHDLDASGCTS 330 (545)
Q Consensus 309 ~l~~ip~----~~~sL~~L~l~~c~~ 330 (545)
+++||. ..++|+.|++.++..
T Consensus 404 -lk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 404 -LKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred -eeecchhhhccCcccceecCCCCcc
Confidence 566664 456788888877643
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=3.4e-25 Score=224.64 Aligned_cols=295 Identities=24% Similarity=0.326 Sum_probs=238.7
Q ss_pred hhhhhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc-----cccccCccEEEcCCCCCccccccccCC
Q 009053 12 PYTFSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL-----DIHAENLVSLKMPGSKVKQLWDDVQNL 86 (545)
Q Consensus 12 ~~~f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l-----~~~~~~L~~L~L~~~~l~~l~~~~~~l 86 (545)
|+.++.+.+|++|.+.+|....+-..+..+| .||.+.+..|.++.- .|.++.|..|+|++|+++++|.++...
T Consensus 48 PeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp--~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~A 125 (1255)
T KOG0444|consen 48 PEELSRLQKLEHLSMAHNQLISVHGELSDLP--RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYA 125 (1255)
T ss_pred hHHHHHHhhhhhhhhhhhhhHhhhhhhccch--hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhh
Confidence 6677888888888888877777777788887 888888888777654 778888888888888888888888888
Q ss_pred CCccEEEecCCCCCCCCCC--CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCC-------------------
Q 009053 87 VNLKKIDLWYSKLLTKLPD--LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCE------------------- 145 (545)
Q Consensus 87 ~~L~~LdLs~~~~~~~~p~--l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~------------------- 145 (545)
+++-.|+||+|++-+ +|. +.+++.|-.|+|+.| .+..+|+-+..+..|++|.|++|.
T Consensus 126 Kn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred cCcEEEEcccCcccc-CCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence 888888888776643 343 456666666666654 455555555555555555555542
Q ss_pred -----C-CCccCCcc-CCccccEEeecCCCCCCCCCccccCC--ccEEEcccccCcccCccccCCCCCCEEEecCCCCCc
Q 009053 146 -----S-LRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSG--IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLE 216 (545)
Q Consensus 146 -----~-l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~--L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~ 216 (545)
. +..+|..+ .+.+|+.++++. ..+..+|+-.... |+.|++++|.|+++....+.+.+|+.|+++.| .+.
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt 281 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLT 281 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhc
Confidence 2 23567777 788899999987 5577778766555 99999999999999999999999999999995 577
Q ss_pred cccccccCCCCCcEEEEeCCCCC-CccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcC
Q 009053 217 SLPSSLSMFKSLTSLEIIYCPKL-KRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRH 295 (545)
Q Consensus 217 ~lp~~l~~l~~L~~L~Ls~c~~~-~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~ 295 (545)
.+|..+++++.|+.|.+.+|... .-+|..+|.+.+|+.+...+|.+.-+|..+..|..|+.|.|+.| .+..+|+.|.-
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHl 360 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHL 360 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc-ceeechhhhhh
Confidence 89999999999999999988765 56899999999999999999999999999999999999999999 88899999999
Q ss_pred CCCCCEEeccCCcCcccc
Q 009053 296 LSKLTSLFISDCKMLQTL 313 (545)
Q Consensus 296 l~~L~~L~L~~c~~l~~i 313 (545)
++.|+.|++..|+.+.--
T Consensus 361 L~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 361 LPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cCCcceeeccCCcCccCC
Confidence 999999999999887543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=7.5e-24 Score=213.74 Aligned_cols=297 Identities=19% Similarity=0.207 Sum_probs=210.4
Q ss_pred ccccChhhhhCCCCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcccc-
Q 009053 7 EIQINPYTFSKMTELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLW- 80 (545)
Q Consensus 7 ~~~~~~~~f~~m~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~- 80 (545)
..+++.+.++-++.||.||++.|....+| ..+..-. ++++|++.+|.++.+ +..+.+|..|.|+.|+++.+|
T Consensus 137 I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~--ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~ 214 (873)
T KOG4194|consen 137 ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKV--NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ 214 (873)
T ss_pred cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCC--CceEEeeccccccccccccccccchheeeecccCcccccCH
Confidence 45677788888888888888887777776 3344433 788888888888888 445568888888888888887
Q ss_pred ccccCCCCccEEEecCCCCCCC-CCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc-CCcc
Q 009053 81 DDVQNLVNLKKIDLWYSKLLTK-LPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKY 158 (545)
Q Consensus 81 ~~~~~l~~L~~LdLs~~~~~~~-~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~ 158 (545)
..++++++|+.|||..|.+-.. .-.|.++++|+.|.|..|..-.--...+-.|.++++|+|+.|....--..++ ++++
T Consensus 215 r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 215 RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence 4567788888888888876543 3457888888888888876544444566678888888888864333223333 8888
Q ss_pred ccEEeecCCCCCCCCCc-cc-cCCccEEEcccccCcccCc-cccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeC
Q 009053 159 LKRLVLRGCSNLKNFPE-IS-SSGIHRLDLTHVGIKELPS-SIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIY 235 (545)
Q Consensus 159 L~~L~L~~c~~l~~~p~-~~-~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~ 235 (545)
|+.|+++.+..-..-++ +. ...|++|+|+.|+|+++++ ++.-+..|+.|+|+.|.....--..+..+++|++|+|++
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence 88888888653222111 11 1118888888888888865 466688888888888765433333466778888888888
Q ss_pred CCCCCcc---ccccCCCCCCcEEEecCccCcCCC-ccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccC
Q 009053 236 CPKLKRL---PDELGNLKALEELRVEGTAIRRPP-ESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISD 306 (545)
Q Consensus 236 c~~~~~l---p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~ 306 (545)
|.....+ ...+..|++|+.|.+.+|++..+| .++.+++.|++|+|.+|..-+.-|..+..+ .|++|.++.
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 7765433 345677888888888888888776 467788888888888884444455666666 777776653
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.2e-24 Score=210.76 Aligned_cols=315 Identities=24% Similarity=0.322 Sum_probs=246.3
Q ss_pred CcccccChhhhhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc--cccccCccEEEcCCCCCcccccc
Q 009053 5 NSEIQINPYTFSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL--DIHAENLVSLKMPGSKVKQLWDD 82 (545)
Q Consensus 5 ~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~~~l~~l~~~ 82 (545)
++...+++..+. |+.|+.|+...|....+|+.++.+. +|..|++..|.+..+ +..+..|.+|++..|.|+.+|.+
T Consensus 170 n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~--~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae 246 (565)
T KOG0472|consen 170 NKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLE--SLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAE 246 (565)
T ss_pred cchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchh--hhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHH
Confidence 355667777777 9999999998888889999999997 999999999999988 67888899999999999999976
Q ss_pred c-cCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCcc----------
Q 009053 83 V-QNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTL---------- 150 (545)
Q Consensus 83 ~-~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~l---------- 150 (545)
. +++++|..|||.+|++. +.|+ +..+.+|++|++++| .+..+|.+++++ .|+.|-+.||..- .+
T Consensus 247 ~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~ 322 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQ 322 (565)
T ss_pred Hhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchH-HHHHHHHcccHH
Confidence 5 59999999999998765 4565 888899999999975 577889999999 8999999886421 11
Q ss_pred ----------------------------CCc-----cCCccccEEeecCCCCCCCCCccccC-----CccEEEcccccCc
Q 009053 151 ----------------------------PTS-----IQSKYLKRLVLRGCSNLKNFPEISSS-----GIHRLDLTHVGIK 192 (545)
Q Consensus 151 ----------------------------p~~-----~~l~~L~~L~L~~c~~l~~~p~~~~~-----~L~~L~l~~~~i~ 192 (545)
|.+ -...+.+.|++++ ..++.+|.-... .+...++++|++.
T Consensus 323 ~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 323 EVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred HHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHh
Confidence 000 0234566677776 556666653221 1778889999999
Q ss_pred ccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccCCCC
Q 009053 193 ELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESLGQL 272 (545)
Q Consensus 193 ~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l 272 (545)
++|..+..++.+...-+..++..+-+|..++.+++|..|++++ +.+..+|..++.+..|+.|+++.|.+..+|..+..+
T Consensus 402 elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~l 480 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYEL 480 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheecccccccccchHHHhhH
Confidence 9888877777666655555567777888888889999999987 456788888888888999999999888888877777
Q ss_pred CCCcEEeccCCcCCCcchhh-hcCCCCCCEEeccCCcCccccCCC---CCCccEEeccCCCC
Q 009053 273 SSLQILSLSDNSNLERAPES-IRHLSKLTSLFISDCKMLQTLPEL---PCNLHDLDASGCTS 330 (545)
Q Consensus 273 ~~L~~L~L~~n~~~~~lp~~-l~~l~~L~~L~L~~c~~l~~ip~~---~~sL~~L~l~~c~~ 330 (545)
..|+.+-.++| .++.++.+ +.++.+|..||+.+|. ++.+|+. +.+|+.|+++|++.
T Consensus 481 q~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 481 QTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HHHHHHHhccc-cccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCcc
Confidence 77777777777 77766655 8888888888888654 6677764 46778888887653
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1e-23 Score=204.39 Aligned_cols=218 Identities=21% Similarity=0.314 Sum_probs=112.5
Q ss_pred hhhhhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc---cccccCccEEEcCCCCCccccccccCCCC
Q 009053 12 PYTFSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL---DIHAENLVSLKMPGSKVKQLWDDVQNLVN 88 (545)
Q Consensus 12 ~~~f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~~~l~~l~~~~~~l~~ 88 (545)
...+.++..|.+|.+++|....+|..+..+. +++.|+.+++.+..+ ...+.+|+.|+.+++.++.++.++..+..
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~--~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLSQLPAAIGELE--ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD 138 (565)
T ss_pred cHhhhcccceeEEEeccchhhhCCHHHHHHH--HHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence 3445566666666666655556665555554 555566666555555 44555556666666666666666666666
Q ss_pred ccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecCC
Q 009053 89 LKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGC 167 (545)
Q Consensus 89 L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c 167 (545)
|..++..+|++.+..+++..+..|..|++.++. +.++|+..-.|+.|++||...| .++.+|..+ .+.+|+.|++..
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~- 215 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRR- 215 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhh-
Confidence 666665555555555555555555555555543 2333333333555555555442 345555555 555555555555
Q ss_pred CCCCCCCccccCC-ccEEEcccccCcccCcccc-CCCCCCEEEecCCCCCccccccccCCCCCcEEEEeC
Q 009053 168 SNLKNFPEISSSG-IHRLDLTHVGIKELPSSID-RLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIY 235 (545)
Q Consensus 168 ~~l~~~p~~~~~~-L~~L~l~~~~i~~lp~~~~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~ 235 (545)
.++..+|++.+.. |.++++..|.|+.+|..+. +++++..||++.| .+.+.|..++.+++|+.||+++
T Consensus 216 Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 216 NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccC
Confidence 2344444444333 4444444444444444333 3444444444442 2333444444444444444444
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=1.1e-20 Score=200.43 Aligned_cols=314 Identities=24% Similarity=0.270 Sum_probs=213.0
Q ss_pred ChhhhhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc---cccccCccEEEcCCCCCccccccccCCC
Q 009053 11 NPYTFSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL---DIHAENLVSLKMPGSKVKQLWDDVQNLV 87 (545)
Q Consensus 11 ~~~~f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~~~l~~l~~~~~~l~ 87 (545)
+.++..+.-+|+.|++++|....+|..+..++ +|+.|+++.+-+.+. .....+|.+|.|.+|.++.+|.++..++
T Consensus 37 pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~--~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lk 114 (1081)
T KOG0618|consen 37 PLEFVEKRVKLKSLDLSNNQISSFPIQITLLS--HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELK 114 (1081)
T ss_pred chHHhhheeeeEEeeccccccccCCchhhhHH--HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhh
Confidence 35666777779999999999999999999998 999999999988888 6778899999999999999999999999
Q ss_pred CccEEEecCCCCCCCCCCCCCCCC-------------------ccEEEeeCCCCCccccccccCCCCCCEEEecCCCCC-
Q 009053 88 NLKKIDLWYSKLLTKLPDLSLAQN-------------------LEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESL- 147 (545)
Q Consensus 88 ~L~~LdLs~~~~~~~~p~l~~l~~-------------------L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l- 147 (545)
+|+.||+|+|.+....+-+..+.. ++.+++..+.....++..+..++. .|+|++|...
T Consensus 115 nl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~ 192 (1081)
T KOG0618|consen 115 NLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV 192 (1081)
T ss_pred cccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh
Confidence 999999999988654433333333 444455544444445545555444 4777666543
Q ss_pred ---------Ccc-------CCc-cCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEec
Q 009053 148 ---------RTL-------PTS-IQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIH 210 (545)
Q Consensus 148 ---------~~l-------p~~-~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~ 210 (545)
+.+ ... +..++|+.|+.+.|+..+..+......++.++++.+.+..+|++++.+.+|+.++..
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEeccc
Confidence 111 000 134566777777776665555444444888888888888888888888888888877
Q ss_pred CCCCC----------------------ccccccccCCCCCcEEEEeCCCCCCcccc------------------------
Q 009053 211 DCTSL----------------------ESLPSSLSMFKSLTSLEIIYCPKLKRLPD------------------------ 244 (545)
Q Consensus 211 ~~~~l----------------------~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~------------------------ 244 (545)
.|... ..+|+....+++|++|++..|.. ..+|+
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccc
Confidence 76542 13455555667777777766543 11111
Q ss_pred --------------------------ccCCCCCCcEEEecCccCcCCCc-cCCCCCCCcEEeccCCcCCCcchhhh----
Q 009053 245 --------------------------ELGNLKALEELRVEGTAIRRPPE-SLGQLSSLQILSLSDNSNLERAPESI---- 293 (545)
Q Consensus 245 --------------------------~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~l---- 293 (545)
.+.++.+|+.|+|++|.+..+|+ .+.++..|++|+|+|| .++.+|..+
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~ 430 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLG 430 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhh
Confidence 12345678888888888777764 4566777777777777 666666554
Q ss_pred ------------------cCCCCCCEEeccCCcCccc-cCC-CC-CCccEEeccCCCC
Q 009053 294 ------------------RHLSKLTSLFISDCKMLQT-LPE-LP-CNLHDLDASGCTS 330 (545)
Q Consensus 294 ------------------~~l~~L~~L~L~~c~~l~~-ip~-~~-~sL~~L~l~~c~~ 330 (545)
.+++.|+.+|++.|..-.- +|+ .| ++|++||++|++.
T Consensus 431 ~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 4455555556654433221 222 34 5667777666653
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=8.1e-18 Score=183.71 Aligned_cols=263 Identities=24% Similarity=0.251 Sum_probs=202.1
Q ss_pred CCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcccccccCccEEEcCCCCCccccccccCCCCccEEEecCCC
Q 009053 19 TELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTLDIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSK 98 (545)
Q Consensus 19 ~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~ 98 (545)
.+-..|+++++....+|..+ + .+|+.|.+.+|.++.+...+++|++|++++|+++.+|.. .++|+.|+|++|.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l---~-~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL---P-AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch---h-cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 55678899887767778654 3 488999999999998855578999999999999988853 4688999999987
Q ss_pred CCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCcccc
Q 009053 99 LLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISS 178 (545)
Q Consensus 99 ~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~ 178 (545)
+. .+|. ..++|+.|++.+|. +..+|. .+++|+.|++++| .+..+|.. ..+|+.|++++|. ++.+|....
T Consensus 274 L~-~Lp~--lp~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L~Ls~N~-L~~LP~lp~ 342 (788)
T PRK15387 274 LT-HLPA--LPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDN-QLASLPAL--PSELCKLWAYNNQ-LTSLPTLPS 342 (788)
T ss_pred hh-hhhh--chhhcCEEECcCCc-cccccc---cccccceeECCCC-ccccCCCC--cccccccccccCc-ccccccccc
Confidence 54 4444 23678899999874 556664 3478999999997 45566653 3467888888854 566776543
Q ss_pred CCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEec
Q 009053 179 SGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVE 258 (545)
Q Consensus 179 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~ 258 (545)
. |+.|++++|.++++|.. ..+|+.|++++|.. ..+|.. ..+|+.|++++|... .+|.. .++|+.|+++
T Consensus 343 ~-Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L-~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS 410 (788)
T PRK15387 343 G-LQELSVSDNQLASLPTL---PSELYKLWAYNNRL-TSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVS 410 (788)
T ss_pred c-cceEecCCCccCCCCCC---Ccccceehhhcccc-ccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEcc
Confidence 3 99999999999998864 35678888888654 457753 357899999998654 46643 3679999999
Q ss_pred CccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCC
Q 009053 259 GTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPE 315 (545)
Q Consensus 259 ~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~ 315 (545)
+|.++.+|.. ..+|+.|++++| .++.+|..+.++++|+.|+|++|+..+..+.
T Consensus 411 ~N~LssIP~l---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 411 GNRLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCcCCCCCcc---hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 9999988864 357888999999 8889999999999999999999987665443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=5.8e-17 Score=177.08 Aligned_cols=244 Identities=24% Similarity=0.240 Sum_probs=193.0
Q ss_pred CCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcccccccCccEEEcCCCCCccccccccCCCCccEEEecCCC
Q 009053 19 TELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTLDIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSK 98 (545)
Q Consensus 19 ~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~ 98 (545)
.+|+.|.+++|....+|. ++ .+|++|++++|.++.+...+++|+.|++.+|.++.+|.. ..+|+.|++++|+
T Consensus 222 ~~L~~L~L~~N~Lt~LP~----lp-~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~ 293 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA----LP-PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQ 293 (788)
T ss_pred cCCCEEEccCCcCCCCCC----CC-CCCcEEEecCCccCcccCcccccceeeccCCchhhhhhc---hhhcCEEECcCCc
Confidence 379999999987777775 23 599999999999998844568999999999999988763 3678899999997
Q ss_pred CCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCcccc
Q 009053 99 LLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISS 178 (545)
Q Consensus 99 ~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~ 178 (545)
+. .+|. ..++|+.|++++|. +..+|.. ...|+.|++++|. ++.+|.. ..+|+.|++++| .++.+|....
T Consensus 294 Lt-~LP~--~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l--p~~Lq~LdLS~N-~Ls~LP~lp~ 362 (788)
T PRK15387 294 LT-SLPV--LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTL--PSGLQELSVSDN-QLASLPTLPS 362 (788)
T ss_pred cc-cccc--cccccceeECCCCc-cccCCCC---cccccccccccCc-ccccccc--ccccceEecCCC-ccCCCCCCCc
Confidence 65 4554 35789999999984 5556643 3468889999864 5667752 257999999995 5677887654
Q ss_pred CCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEec
Q 009053 179 SGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVE 258 (545)
Q Consensus 179 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~ 258 (545)
. |+.|++++|.+..+|... .+|+.|++++|... .+|.. .++|+.|++++|... .+|.. ..+|+.|+++
T Consensus 363 ~-L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls 430 (788)
T PRK15387 363 E-LYKLWAYNNRLTSLPALP---SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVY 430 (788)
T ss_pred c-cceehhhccccccCcccc---cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhc
Confidence 4 999999999999998643 57999999998654 56653 368999999998754 57754 3578899999
Q ss_pred CccCcCCCccCCCCCCCcEEeccCCcCCCcchhhh
Q 009053 259 GTAIRRPPESLGQLSSLQILSLSDNSNLERAPESI 293 (545)
Q Consensus 259 ~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l 293 (545)
+|.++.+|..+..+++|+.|+|++|+.-+..+..+
T Consensus 431 ~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 431 RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 99999999999999999999999995444566555
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=3.6e-17 Score=179.63 Aligned_cols=244 Identities=25% Similarity=0.372 Sum_probs=125.7
Q ss_pred CccEEEeCCCCCCcc-cccccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCC
Q 009053 45 EVRYFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSL 123 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l 123 (545)
+...|+++++.++.+ ..-+++|+.|+|++|+++.+|..+. ++|+.|++++|.+. .+|. +-.++|+.|+|++|. +
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l~~~L~~L~Ls~N~-L 253 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPA-TLPDTIQEMELSINR-I 253 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCCh-hhhccccEEECcCCc-c
Confidence 344455555444444 2233445555555555555554332 35555555555433 2332 111345555555543 2
Q ss_pred ccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCC
Q 009053 124 TETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSK 203 (545)
Q Consensus 124 ~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~ 203 (545)
..+|..+. .+|+.|++++| .+..+|..+ .++|+.|++++| .++.+|......|+.|++++|.++.+|..+. ++
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l-~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~s 326 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHN-KISCLPENL-PEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLP--PG 326 (754)
T ss_pred CcCChhHh--CCCCEEECcCC-ccCcccccc-CCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCcccc--cc
Confidence 34444332 35555555543 333444433 135555565554 3444443332236666666666666655432 46
Q ss_pred CCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCC
Q 009053 204 LDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDN 283 (545)
Q Consensus 204 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n 283 (545)
|+.|++++|... .+|..+. ++|+.|++++|... .+|..+. ++|+.|++++|.++.+|..+. ..|+.|++++|
T Consensus 327 L~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N 398 (754)
T PRK15370 327 LKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRN 398 (754)
T ss_pred ceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccC
Confidence 666666665433 3554432 56666666666543 4554432 466777777777666665443 35666777776
Q ss_pred cCCCcchhhhc----CCCCCCEEeccCCcC
Q 009053 284 SNLERAPESIR----HLSKLTSLFISDCKM 309 (545)
Q Consensus 284 ~~~~~lp~~l~----~l~~L~~L~L~~c~~ 309 (545)
.+..+|..+. .++.+..|++.+|+.
T Consensus 399 -~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 399 -NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred -CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 5555554433 335666677766654
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=1.6e-18 Score=184.30 Aligned_cols=283 Identities=24% Similarity=0.314 Sum_probs=222.4
Q ss_pred hhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc--cccccCccEEEcCCCCCccccccccCCCCccEE
Q 009053 15 FSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL--DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKI 92 (545)
Q Consensus 15 f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L 92 (545)
...+.+|+.|....|....+.. .- .+|+.|..++|++..+ .+.+.+|+.++++++++..+|+.+..+.+|+.+
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~~---~g--~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l 269 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELEI---SG--PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEAL 269 (1081)
T ss_pred hhhccchhhhhhhhcccceEEe---cC--cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEe
Confidence 3455555555554433332221 12 3788888999998877 888999999999999999999999999999999
Q ss_pred EecCCCCCCCCC-CCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc--C-CccccEEeecCCC
Q 009053 93 DLWYSKLLTKLP-DLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI--Q-SKYLKRLVLRGCS 168 (545)
Q Consensus 93 dLs~~~~~~~~p-~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~-l~~L~~L~L~~c~ 168 (545)
+..+|.+. .+| .+...++|+.|.+..| .+..+|+....++.|++|+|..| .+..+|..+ . ..+|+.|+.+. .
T Consensus 270 ~~n~N~l~-~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~-n 345 (1081)
T KOG0618|consen 270 NANHNRLV-ALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSS-N 345 (1081)
T ss_pred cccchhHH-hhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhh-c
Confidence 99999884 445 4888899999999987 47788888999999999999985 577888755 2 23366666665 4
Q ss_pred CCCCCCccccCC---ccEEEcccccCcc-cCccccCCCCCCEEEecCCCCCccccc-cccCCCCCcEEEEeCCCCCCccc
Q 009053 169 NLKNFPEISSSG---IHRLDLTHVGIKE-LPSSIDRLSKLDTLKIHDCTSLESLPS-SLSMFKSLTSLEIIYCPKLKRLP 243 (545)
Q Consensus 169 ~l~~~p~~~~~~---L~~L~l~~~~i~~-lp~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~~~~lp 243 (545)
.+...|...+.. |+.|++.+|.+++ .-+.+.++++|+.|+|++|. +..+|. .+.++..|++|+++||. +..+|
T Consensus 346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNk-L~~Lp 423 (1081)
T KOG0618|consen 346 KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNK-LTTLP 423 (1081)
T ss_pred cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccch-hhhhh
Confidence 566666554443 9999999999985 33457789999999999965 555665 47889999999999965 57788
Q ss_pred cccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCC--cchhhhcCCCCCCEEeccCCcCcc
Q 009053 244 DELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLE--RAPESIRHLSKLTSLFISDCKMLQ 311 (545)
Q Consensus 244 ~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L~L~~c~~l~ 311 (545)
+.+.++..|++|...+|.+..+| .+..++.|+.+|++.| .+. .+|..... ++|++||+++|..+.
T Consensus 424 ~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCC-cccceeeccCCcccc
Confidence 99999999999999999999999 8999999999999999 665 45544333 899999999998643
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=4.2e-16 Score=171.26 Aligned_cols=245 Identities=21% Similarity=0.329 Sum_probs=192.7
Q ss_pred CCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc-cccccCccEEEcCCCCCccccccccCCCCccEEEecCC
Q 009053 19 TELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL-DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYS 97 (545)
Q Consensus 19 ~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~ 97 (545)
.+...|+++++....+|.. ++ .+|+.|++++|.++.+ .....+|++|++++|+++.+|..+. .+|+.|+|++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~---Ip-~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPAC---IP-EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcc---cc-cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 5678899987666677754 45 6899999999999998 3344699999999999999987654 58999999999
Q ss_pred CCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCCcc
Q 009053 98 KLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFPEI 176 (545)
Q Consensus 98 ~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~ 176 (545)
.+. .+|. + ..+|+.|++++| .+..+|..+. ++|+.|++++| .++.+|..+ .++|+.|++++|. +..+|..
T Consensus 252 ~L~-~LP~~l--~s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l-p~sL~~L~Ls~N~-Lt~LP~~ 322 (754)
T PRK15370 252 RIT-ELPERL--PSALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHL-PSGITHLNVQSNS-LTALPET 322 (754)
T ss_pred ccC-cCChhH--hCCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccc-hhhHHHHHhcCCc-cccCCcc
Confidence 876 4553 3 258999999976 5567787664 58999999997 466777644 2578999999864 5567765
Q ss_pred ccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEE
Q 009053 177 SSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELR 256 (545)
Q Consensus 177 ~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~ 256 (545)
....|+.|++++|.++.+|..+. ++|+.|++++|.. ..+|..+ .++|+.|++++|... .+|..+. ..|+.|+
T Consensus 323 l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld 394 (754)
T PRK15370 323 LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQI-TVLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQ 394 (754)
T ss_pred ccccceeccccCCccccCChhhc--CcccEEECCCCCC-CcCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHh
Confidence 44459999999999999998764 7999999999865 4577655 368999999998754 6776654 3799999
Q ss_pred ecCccCcCCCccC----CCCCCCcEEeccCCcCCC
Q 009053 257 VEGTAIRRPPESL----GQLSSLQILSLSDNSNLE 287 (545)
Q Consensus 257 L~~n~l~~lp~~l----~~l~~L~~L~L~~n~~~~ 287 (545)
+++|++..+|..+ +.++.+..|++.+| .+.
T Consensus 395 Ls~N~L~~LP~sl~~~~~~~~~l~~L~L~~N-pls 428 (754)
T PRK15370 395 ASRNNLVRLPESLPHFRGEGPQPTRIIVEYN-PFS 428 (754)
T ss_pred hccCCcccCchhHHHHhhcCCCccEEEeeCC-Ccc
Confidence 9999999887654 44588999999999 443
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=3.5e-15 Score=150.81 Aligned_cols=249 Identities=21% Similarity=0.189 Sum_probs=125.8
Q ss_pred cccCccEEEcCCCCCc-----cccccccCCCCccEEEecCCCCCCC------C-CCCCCCCCccEEEeeCCCCCcccccc
Q 009053 62 HAENLVSLKMPGSKVK-----QLWDDVQNLVNLKKIDLWYSKLLTK------L-PDLSLAQNLEILDLGGCSSLTETHSS 129 (545)
Q Consensus 62 ~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~LdLs~~~~~~~------~-p~l~~l~~L~~L~L~~c~~l~~~~~~ 129 (545)
...+|++|+++++.++ .++..+...++|+.++++++..... + ..+..+++|+.|++++|......+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 3344666666666652 3445556666677777766554320 0 01344556666666666544333333
Q ss_pred ccCCCC---CCEEEecCCCCCCc----cCCcc-CC-ccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccC
Q 009053 130 IQYLNK---LEVLDLDRCESLRT----LPTSI-QS-KYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDR 200 (545)
Q Consensus 130 i~~l~~---L~~L~L~~c~~l~~----lp~~~-~l-~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~ 200 (545)
+..+.+ |++|++++|..... +...+ .+ ++|+.|++++|...... ...++..+..
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-----------------~~~~~~~~~~ 163 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS-----------------CEALAKALRA 163 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH-----------------HHHHHHHHHh
Confidence 333333 66666666543211 11111 22 34444444444321100 0023334445
Q ss_pred CCCCCEEEecCCCCCc----cccccccCCCCCcEEEEeCCCCCC----ccccccCCCCCCcEEEecCccCcCC-CccC--
Q 009053 201 LSKLDTLKIHDCTSLE----SLPSSLSMFKSLTSLEIIYCPKLK----RLPDELGNLKALEELRVEGTAIRRP-PESL-- 269 (545)
Q Consensus 201 l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~Ls~c~~~~----~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l-- 269 (545)
+++|+.|++++|...+ .++..+..+++|+.|++++|...+ .++..+..+++|++|++++|.++.. +..+
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~ 243 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS 243 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH
Confidence 5566666666665442 223334445566667776665432 2334455666777777777666521 1111
Q ss_pred ---CCCCCCcEEeccCCcCCC-----cchhhhcCCCCCCEEeccCCcCccc----cC---CCC-CCccEEeccCC
Q 009053 270 ---GQLSSLQILSLSDNSNLE-----RAPESIRHLSKLTSLFISDCKMLQT----LP---ELP-CNLHDLDASGC 328 (545)
Q Consensus 270 ---~~l~~L~~L~L~~n~~~~-----~lp~~l~~l~~L~~L~L~~c~~l~~----ip---~~~-~sL~~L~l~~c 328 (545)
...+.|+.|++++| .++ .+...+..+++|+.+++++|..-.. +. ..+ +.|+.+++.+.
T Consensus 244 ~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 244 ALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 12467777777777 443 3445566667777777777765432 11 122 56666666553
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.6e-15 Score=131.84 Aligned_cols=176 Identities=31% Similarity=0.467 Sum_probs=139.0
Q ss_pred ccCCccCCccccEEeecCCCCCCCCCccccCC--ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCC
Q 009053 149 TLPTSIQSKYLKRLVLRGCSNLKNFPEISSSG--IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFK 226 (545)
Q Consensus 149 ~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~--L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~ 226 (545)
.+|..+.+.+++.|.++.+ ++..+|...... |+.|++.+|.++++|.++..+++|+.|+++-| .+..+|..++.+|
T Consensus 25 ~~~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p 102 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFP 102 (264)
T ss_pred hcccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCc
Confidence 3444445555666666663 333333333222 77777888889999999999999999999874 5677899999999
Q ss_pred CCcEEEEeCCCCC-CccccccCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEecc
Q 009053 227 SLTSLEIIYCPKL-KRLPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFIS 305 (545)
Q Consensus 227 ~L~~L~Ls~c~~~-~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~ 305 (545)
.|+.|++++|+.. ..+|..|..|+.|+.|++++|.+.-+|..++.+++|+.|.+.+| .+-++|..++.+..|++|.+.
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcc
Confidence 9999999998865 46898999999999999999999999999999999999999999 888999999999999999999
Q ss_pred CCcCccccCCCCCCccEEeccCCCCC
Q 009053 306 DCKMLQTLPELPCNLHDLDASGCTSL 331 (545)
Q Consensus 306 ~c~~l~~ip~~~~sL~~L~l~~c~~L 331 (545)
+|+ ++.+| +.|-.|++-+....
T Consensus 182 gnr-l~vlp---pel~~l~l~~~k~v 203 (264)
T KOG0617|consen 182 GNR-LTVLP---PELANLDLVGNKQV 203 (264)
T ss_pred cce-eeecC---hhhhhhhhhhhHHH
Confidence 876 44444 44555555554443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.43 E-value=1.7e-14 Score=145.83 Aligned_cols=243 Identities=22% Similarity=0.200 Sum_probs=158.3
Q ss_pred EEcCCCCCc--cccccccCCCCccEEEecCCCCCCC----CC-CCCCCCCccEEEeeCCCCC------ccccccccCCCC
Q 009053 69 LKMPGSKVK--QLWDDVQNLVNLKKIDLWYSKLLTK----LP-DLSLAQNLEILDLGGCSSL------TETHSSIQYLNK 135 (545)
Q Consensus 69 L~L~~~~l~--~l~~~~~~l~~L~~LdLs~~~~~~~----~p-~l~~l~~L~~L~L~~c~~l------~~~~~~i~~l~~ 135 (545)
|+|..+.++ .....+..+.+|+.|+++++.+... ++ .+...++|++|+++++... ..++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555554 2223446667788888888876432 22 2556677888888876543 223445666778
Q ss_pred CCEEEecCCCCCCccCCcc-CC---ccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCC-CCCCEEEec
Q 009053 136 LEVLDLDRCESLRTLPTSI-QS---KYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRL-SKLDTLKIH 210 (545)
Q Consensus 136 L~~L~L~~c~~l~~lp~~~-~l---~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l-~~L~~L~L~ 210 (545)
|+.|++++|......+..+ .+ ++|+.|++++|..... ....+...+..+ ++|+.|+++
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~-----------------~~~~l~~~l~~~~~~L~~L~L~ 145 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR-----------------GLRLLAKGLKDLPPALEKLVLG 145 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchH-----------------HHHHHHHHHHhCCCCceEEEcC
Confidence 8888888876544333322 22 2366666655432110 001233445566 899999999
Q ss_pred CCCCCc----cccccccCCCCCcEEEEeCCCCCC----ccccccCCCCCCcEEEecCccCcC-----CCccCCCCCCCcE
Q 009053 211 DCTSLE----SLPSSLSMFKSLTSLEIIYCPKLK----RLPDELGNLKALEELRVEGTAIRR-----PPESLGQLSSLQI 277 (545)
Q Consensus 211 ~~~~l~----~lp~~l~~l~~L~~L~Ls~c~~~~----~lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~ 277 (545)
+|.... .++..+..+++|++|++++|...+ .++..+..+++|+.|++++|.+.. +...+..+++|+.
T Consensus 146 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 146 RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred CCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 998763 344456778899999999998764 244556677899999999998862 3456677899999
Q ss_pred EeccCCcCCCc-chhhh-c----CCCCCCEEeccCCcCc--------cccCCCCCCccEEeccCCCC
Q 009053 278 LSLSDNSNLER-APESI-R----HLSKLTSLFISDCKML--------QTLPELPCNLHDLDASGCTS 330 (545)
Q Consensus 278 L~L~~n~~~~~-lp~~l-~----~l~~L~~L~L~~c~~l--------~~ip~~~~sL~~L~l~~c~~ 330 (545)
|++++| .++. ....+ . ..+.|++|++++|... +.++.. ++|+++++++|..
T Consensus 226 L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l 290 (319)
T cd00116 226 LNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKF 290 (319)
T ss_pred EecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCC
Confidence 999999 5552 12111 1 2479999999999764 122333 6899999999754
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=5.2e-14 Score=122.48 Aligned_cols=165 Identities=26% Similarity=0.338 Sum_probs=114.0
Q ss_pred cccccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEE
Q 009053 60 DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVL 139 (545)
Q Consensus 60 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L 139 (545)
.|.+.+++.|.|++|++..+|..+..+.+|+.|++++|++....+.++.++.|+.|++.-+ .+..+|..++.++.|+.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 4566667777777777777777777777777777777666554455677777777776643 455666667777777777
Q ss_pred EecCCCCCC-ccCCcc-CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCcc
Q 009053 140 DLDRCESLR-TLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLES 217 (545)
Q Consensus 140 ~L~~c~~l~-~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~ 217 (545)
|+.++.... .+|..+ .+.. |+.|+++.|.++-+|..++++++|+.|.++.|. +-+
T Consensus 108 dltynnl~e~~lpgnff~m~t----------------------lralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~ 164 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTT----------------------LRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLS 164 (264)
T ss_pred hccccccccccCCcchhHHHH----------------------HHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhh
Confidence 776654322 344333 3333 666666777778889999999999999999865 456
Q ss_pred ccccccCCCCCcEEEEeCCCCCCccccccCCC
Q 009053 218 LPSSLSMFKSLTSLEIIYCPKLKRLPDELGNL 249 (545)
Q Consensus 218 lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l 249 (545)
+|..++.++.|++|++.+|. +..+|..++++
T Consensus 165 lpkeig~lt~lrelhiqgnr-l~vlppel~~l 195 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNR-LTVLPPELANL 195 (264)
T ss_pred CcHHHHHHHHHHHHhcccce-eeecChhhhhh
Confidence 88889999999999999865 45566555543
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=1.4e-13 Score=134.34 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=69.8
Q ss_pred CCCCCCcc-cccccCccEEEcCCCCCccccc-cccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccc
Q 009053 52 HQYPLKTL-DIHAENLVSLKMPGSKVKQLWD-DVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHS 128 (545)
Q Consensus 52 ~~~~l~~l-~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~ 128 (545)
++-.++.+ .--++.-++++|..|.|+.+|. .++.+++|+.||||+|.+...-|+ |.++++|..|-+.++..++.+|.
T Consensus 54 r~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 54 RGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred cCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 33344444 4445667777777777777773 467777777777777777665564 77777777777777666666663
Q ss_pred -cccCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecC
Q 009053 129 -SIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRG 166 (545)
Q Consensus 129 -~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~ 166 (545)
.++.+..|+.|.+.-|.........+ .+++|..|.+..
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc
Confidence 34566666666555443222222222 555555555554
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=4.3e-13 Score=130.98 Aligned_cols=265 Identities=17% Similarity=0.173 Sum_probs=133.3
Q ss_pred cEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCC-CCCccccc-cccCCCCccEEEe
Q 009053 22 RFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPG-SKVKQLWD-DVQNLVNLKKIDL 94 (545)
Q Consensus 22 r~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~-~~l~~l~~-~~~~l~~L~~LdL 94 (545)
..+++..|....+| +.|+.+. +||.|++++|.++.+ +.++.+|.+|-+-+ |+|+.+|. .+..+..|+.|.+
T Consensus 70 veirLdqN~I~~iP~~aF~~l~--~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLH--RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred eEEEeccCCcccCChhhccchh--hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 34566666666666 4566664 777777777777666 44555555544444 77777774 3577777777777
Q ss_pred cCCCCCCCCCC-CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCC--ccC----------Ccc-CCcccc
Q 009053 95 WYSKLLTKLPD-LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLR--TLP----------TSI-QSKYLK 160 (545)
Q Consensus 95 s~~~~~~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~--~lp----------~~~-~l~~L~ 160 (545)
..|++.-...+ |..+++|..|.+.++..-..-..++..+..++.+.+..+..+. .+| ... ...-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 77666544443 6677777777777754332223366677777777766654221 111 111 000000
Q ss_pred EEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCcccc-ccccCCCCCcEEEEeCCCCC
Q 009053 161 RLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLP-SSLSMFKSLTSLEIIYCPKL 239 (545)
Q Consensus 161 ~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~~ 239 (545)
-..+.. ..+...+.-.. +.. .+++|+.. .+.|......| ..+.++++|++|++++|...
T Consensus 228 p~rl~~-~Ri~q~~a~kf--~c~-------~esl~s~~----------~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 228 PYRLYY-KRINQEDARKF--LCS-------LESLPSRL----------SSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hHHHHH-HHhcccchhhh--hhh-------HHhHHHhh----------ccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 000100 00000000000 000 01111100 11111122222 12455566666666665555
Q ss_pred CccccccCCCCCCcEEEecCccCcCCC-ccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCc
Q 009053 240 KRLPDELGNLKALEELRVEGTAIRRPP-ESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCK 308 (545)
Q Consensus 240 ~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~ 308 (545)
..-+.+|.....+++|.|.+|++..+- ..+.++..|+.|+|.+|+.....|..+..+.+|.+|+|-.|+
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 555556666666666666666665442 234456666666666663323445556666666666665443
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.10 E-value=6.1e-11 Score=132.86 Aligned_cols=291 Identities=21% Similarity=0.252 Sum_probs=177.1
Q ss_pred CccEEEeCCCCCCcc--cccccCccEEEcCCCC--Cccccc-cccCCCCccEEEecCCCCCCCCCC-CCCCCCccEEEee
Q 009053 45 EVRYFEWHQYPLKTL--DIHAENLVSLKMPGSK--VKQLWD-DVQNLVNLKKIDLWYSKLLTKLPD-LSLAQNLEILDLG 118 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~~~--l~~l~~-~~~~l~~L~~LdLs~~~~~~~~p~-l~~l~~L~~L~L~ 118 (545)
..|...+-++.+..+ ...++.|+.|-+..+. +..++. .+..++.|+.|||++|.....+|+ ++.+-+|++|+++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 778888888877777 5566689999998886 555554 478899999999999999999996 8889999999999
Q ss_pred CCCCCccccccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCcccc-CCccEEEcccccCccc--
Q 009053 119 GCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISS-SGIHRLDLTHVGIKEL-- 194 (545)
Q Consensus 119 ~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~-~~L~~L~l~~~~i~~l-- 194 (545)
++ .+..+|..++++++|.+||+..+..+..+|... .+.+|++|.+..-..-.+.-.... ..|+.|..-.+.....
T Consensus 604 ~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~ 682 (889)
T KOG4658|consen 604 DT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLL 682 (889)
T ss_pred CC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHh
Confidence 84 577999999999999999999988888887666 599999999877431000000000 0033332222222211
Q ss_pred CccccCCCCCC----EEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCC------CCCCcEEEecCccCcC
Q 009053 195 PSSIDRLSKLD----TLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGN------LKALEELRVEGTAIRR 264 (545)
Q Consensus 195 p~~~~~l~~L~----~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~------l~~L~~L~L~~n~l~~ 264 (545)
-..+..+.+|. .+.+.+ ......+..+..+.+|+.|.+.+|............ ++++..+...++....
T Consensus 683 ~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r 761 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR 761 (889)
T ss_pred HhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc
Confidence 11112222222 222222 233444556677888888888888765432222111 2234444444444444
Q ss_pred CCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEec--------------cCCcCccccCCCCCCccEEeccCCCC
Q 009053 265 PPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFI--------------SDCKMLQTLPELPCNLHDLDASGCTS 330 (545)
Q Consensus 265 lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L--------------~~c~~l~~ip~~~~sL~~L~l~~c~~ 330 (545)
.+.+....++|+.|.+..|..++.+......+..++.+-+ .+.+.+...|-..+.|+.+.+..|+.
T Consensus 762 ~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~ 841 (889)
T KOG4658|consen 762 DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPK 841 (889)
T ss_pred ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcc
Confidence 4455556788888888888666654443333333332211 11111222222223467777777777
Q ss_pred CCccCCc
Q 009053 331 LEALPAS 337 (545)
Q Consensus 331 L~~l~~~ 337 (545)
+..+|..
T Consensus 842 l~~~P~~ 848 (889)
T KOG4658|consen 842 LGKLPLL 848 (889)
T ss_pred cccCccc
Confidence 7777653
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=9.3e-10 Score=123.45 Aligned_cols=250 Identities=28% Similarity=0.322 Sum_probs=172.8
Q ss_pred CCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCC-CCccCCcc--CCccccEEeecCCCCCCCCCccccC
Q 009053 103 LPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCES-LRTLPTSI--QSKYLKRLVLRGCSNLKNFPEISSS 179 (545)
Q Consensus 103 ~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~-l~~lp~~~--~l~~L~~L~L~~c~~l~~~p~~~~~ 179 (545)
.|........++..+.++. ...++... ..++|++|-+.++.. +..++..+ .++.|+.|++++|..+..+|...+.
T Consensus 516 ~~~~~~~~~~rr~s~~~~~-~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNK-IEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred cccccchhheeEEEEeccc-hhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 4444444556677766543 33333333 334788888888763 55666532 7899999999999999999988776
Q ss_pred C--ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCC--CCCccccccCCCCCCcEE
Q 009053 180 G--IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCP--KLKRLPDELGNLKALEEL 255 (545)
Q Consensus 180 ~--L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~--~~~~lp~~l~~l~~L~~L 255 (545)
. |++|+++++.+..+|..+++++.|.+|++..+..+..+|.....+.+|++|.+..-. .....-..+.++++|+.+
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 6 999999999999999999999999999999988888887777779999999997643 122233445666777777
Q ss_pred EecCccCcCCCccCCCCCCC----cEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccccCCC---------CCCccE
Q 009053 256 RVEGTAIRRPPESLGQLSSL----QILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQTLPEL---------PCNLHD 322 (545)
Q Consensus 256 ~L~~n~l~~lp~~l~~l~~L----~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~---------~~sL~~ 322 (545)
....... .+...+.....| +.+.+.++ .....+..+..+.+|+.|.+.+|...+..... ++++..
T Consensus 674 s~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~ 751 (889)
T KOG4658|consen 674 SITISSV-LLLEDLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSK 751 (889)
T ss_pred eeecchh-HhHhhhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHH
Confidence 6655443 221222222222 23444444 55566677888999999999999876543322 446666
Q ss_pred EeccCCCCCCccCCcccCCcccEEEEcCCCCCCh
Q 009053 323 LDASGCTSLEALPASLSSKFYLSVDLSNCLKLDL 356 (545)
Q Consensus 323 L~l~~c~~L~~l~~~~~~~~~~~l~l~~C~~L~~ 356 (545)
+.+.+|..+..+.+...+..+..+.+..|..++.
T Consensus 752 ~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 752 VSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred HHhhccccccccchhhccCcccEEEEeccccccc
Confidence 7777888888777655445556888888887764
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=3.8e-09 Score=110.25 Aligned_cols=193 Identities=27% Similarity=0.416 Sum_probs=113.2
Q ss_pred EEcCCCCCccccccccCCCCccEEEecCCCCCCCCCCCCCCC-CccEEEeeCCCCCccccccccCCCCCCEEEecCCCCC
Q 009053 69 LKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQ-NLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESL 147 (545)
Q Consensus 69 L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~-~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l 147 (545)
+.+..+.+......+..++.++.|++.++.+....+...... +|+.|+++++ .+..++..++.++.|+.|++++| .+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hh
Confidence 444444443333334444555555555555444333333442 5666666554 23444445556666666666664 34
Q ss_pred CccCCcc-CCccccEEeecCCCCCCCCCccc--cCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccC
Q 009053 148 RTLPTSI-QSKYLKRLVLRGCSNLKNFPEIS--SSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSM 224 (545)
Q Consensus 148 ~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~--~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~ 224 (545)
..+|... ..+.|+.|++++ ..+..+|... ...|+++.+.+|.+...+..+.+++++..+.+.++. ...++..+..
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~ 253 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhcc
Confidence 4555544 566666666666 3355555542 222677777777666677777777788777766644 3334666777
Q ss_pred CCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCc
Q 009053 225 FKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPE 267 (545)
Q Consensus 225 l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~ 267 (545)
+++++.|++++|.... ++. ++.+.+|+.|+++++.+..++.
T Consensus 254 l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 254 LSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 7888888888765443 333 7788888888888887775543
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.5e-10 Score=113.28 Aligned_cols=205 Identities=21% Similarity=0.229 Sum_probs=110.5
Q ss_pred cCCCCccEEEecCCCCCCCC--CCCCCCCCccEEEeeCCCCC--ccccccccCCCCCCEEEecCCCCCCccCCcc--CCc
Q 009053 84 QNLVNLKKIDLWYSKLLTKL--PDLSLAQNLEILDLGGCSSL--TETHSSIQYLNKLEVLDLDRCESLRTLPTSI--QSK 157 (545)
Q Consensus 84 ~~l~~L~~LdLs~~~~~~~~--p~l~~l~~L~~L~L~~c~~l--~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~ 157 (545)
+++++|+.+.|.++...... .....+++++.|+|++|-.. ..+......+|+|+.|+++.|.......... .++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45666666666665443221 12445666667776664221 1233444566777777777764433222222 345
Q ss_pred cccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCC
Q 009053 158 YLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCP 237 (545)
Q Consensus 158 ~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~ 237 (545)
+|+.|.+++|.... .++-.....+++|+.|++.+|.....-......+..|++|+|++|.
T Consensus 198 ~lK~L~l~~CGls~--------------------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSW--------------------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred hhheEEeccCCCCH--------------------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 55555555553210 1222334456666777776664322222222334566677777665
Q ss_pred CCCc-cccccCCCCCCcEEEecCccCcCC--Ccc-----CCCCCCCcEEeccCCcCCCcchh--hhcCCCCCCEEeccCC
Q 009053 238 KLKR-LPDELGNLKALEELRVEGTAIRRP--PES-----LGQLSSLQILSLSDNSNLERAPE--SIRHLSKLTSLFISDC 307 (545)
Q Consensus 238 ~~~~-lp~~l~~l~~L~~L~L~~n~l~~l--p~~-----l~~l~~L~~L~L~~n~~~~~lp~--~l~~l~~L~~L~L~~c 307 (545)
.... .-...+.++.|..|.++.|++.++ |+. ...+++|+.|++..| .+..++. .+..+++|+.|.+..+
T Consensus 258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcccc
Confidence 5432 113456677777777777777633 443 345678888888888 5554442 3555666666666554
Q ss_pred cC
Q 009053 308 KM 309 (545)
Q Consensus 308 ~~ 309 (545)
..
T Consensus 337 ~l 338 (505)
T KOG3207|consen 337 YL 338 (505)
T ss_pred cc
Confidence 43
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.85 E-value=2.8e-09 Score=111.19 Aligned_cols=194 Identities=26% Similarity=0.314 Sum_probs=137.4
Q ss_pred EEEeCCCCC-Ccc--cccccCccEEEcCCCCCccccccccCCC-CccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCC
Q 009053 48 YFEWHQYPL-KTL--DIHAENLVSLKMPGSKVKQLWDDVQNLV-NLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSL 123 (545)
Q Consensus 48 ~L~l~~~~l-~~l--~~~~~~L~~L~L~~~~l~~l~~~~~~l~-~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l 123 (545)
.|....+.+ ... ....+.+..|++.++.+..++.....+. +|+.|++++|.+......+..+++|+.|++.+| .+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hh
Confidence 466666666 333 4444678888888888888877777774 888888888776554346778888888888876 45
Q ss_pred ccccccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCccccCC-ccEEEcccccCcccCccccCC
Q 009053 124 TETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSG-IHRLDLTHVGIKELPSSIDRL 201 (545)
Q Consensus 124 ~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~-L~~L~l~~~~i~~lp~~~~~l 201 (545)
..++...+..+.|+.|+++++ .+..+|..+ ....|+++.++++..+.......... +..+.+.++.+..++..++.+
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l 254 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL 254 (394)
T ss_pred hhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccc
Confidence 666666667788888888885 567777766 44558888888865333332222222 666777888888878888889
Q ss_pred CCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccc
Q 009053 202 SKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDE 245 (545)
Q Consensus 202 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~ 245 (545)
+.++.|++++|... .++. ++.+.+|+.|+++++......|..
T Consensus 255 ~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 255 SNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 99999999986544 3444 788889999999988776665544
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=5.9e-10 Score=113.99 Aligned_cols=206 Identities=22% Similarity=0.296 Sum_probs=158.1
Q ss_pred eeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc---cccccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCC
Q 009053 26 FYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL---DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTK 102 (545)
Q Consensus 26 l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~ 102 (545)
|++-....+|.+-....+..-...+++.|.+..+ ...+..|+.+.|..|.+..+|..+.++..|+.|||+.|++...
T Consensus 57 Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~l 136 (722)
T KOG0532|consen 57 LSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHL 136 (722)
T ss_pred cccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcC
Confidence 3333345566332222223445677888877777 5556678999999999999999999999999999999988765
Q ss_pred CCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCccccCC-
Q 009053 103 LPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSG- 180 (545)
Q Consensus 103 ~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~- 180 (545)
...+..+| |+.|.+++| .++.+|..++....|..||.+.|. +.++|.-+ .+.+|+.|.+..+. +..+|+-....
T Consensus 137 p~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~Lp 212 (722)
T KOG0532|consen 137 PDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLP 212 (722)
T ss_pred ChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCc
Confidence 55677777 899999975 688999999999999999999874 66777766 99999999999854 55666655555
Q ss_pred ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccC---CCCCcEEEEeCC
Q 009053 181 IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSM---FKSLTSLEIIYC 236 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~---l~~L~~L~Ls~c 236 (545)
|..||++.|.+..+|-.|.+++.|++|-|.+|. +.+-|..++. ..=.++|+..-|
T Consensus 213 Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 999999999999999999999999999999876 4555555433 223456666666
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=4.5e-09 Score=99.66 Aligned_cols=124 Identities=22% Similarity=0.214 Sum_probs=94.2
Q ss_pred ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCc
Q 009053 181 IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGT 260 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n 260 (545)
|+++++++|.|+.+..++.-.+.++.|+++.|.....- .+..+++|+.|++++|.. ..+-.+-..+-+.+.|.+++|
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchh-HhhhhhHhhhcCEeeeehhhh
Confidence 88899999999999999888999999999998765432 266788888999988654 333344456677888888888
Q ss_pred cCcCCCccCCCCCCCcEEeccCCcCCCcch--hhhcCCCCCCEEeccCCcC
Q 009053 261 AIRRPPESLGQLSSLQILSLSDNSNLERAP--ESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 261 ~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp--~~l~~l~~L~~L~L~~c~~ 309 (545)
.+..+. .++.+-+|..||+++| +++.+- ..|+++|.|+.+.|.+|+.
T Consensus 363 ~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 363 KIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCc
Confidence 876553 5667788888888888 666443 4678888888888888764
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=5.3e-10 Score=114.29 Aligned_cols=193 Identities=25% Similarity=0.376 Sum_probs=102.2
Q ss_pred EEEcCCCCCcccccccc--CCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCC
Q 009053 68 SLKMPGSKVKQLWDDVQ--NLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCE 145 (545)
Q Consensus 68 ~L~L~~~~l~~l~~~~~--~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~ 145 (545)
+|.|.+.+++.+|.+-. .+.--...||+.|++.....++..+..|+.+.|..| -+..+|..++++..|+.|||+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N- 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN- 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-
Confidence 45566666666664432 333445667777776554445667777777777765 35667778888888888888875
Q ss_pred CCCccCCccCCccccEEeecCCCCCCCCCccccCC--ccEEEcccccCcccCccccCCCCCCEEEecCCCCCcccccccc
Q 009053 146 SLRTLPTSIQSKYLKRLVLRGCSNLKNFPEISSSG--IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLS 223 (545)
Q Consensus 146 ~l~~lp~~~~l~~L~~L~L~~c~~l~~~p~~~~~~--L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~ 223 (545)
.+..+|..+-.--|+.|.+++ ++++.+|+-.+.. |..|+.+.|.+..+|+.++.+..|+.|.+..|. +..+|..++
T Consensus 132 qlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~ 209 (722)
T KOG0532|consen 132 QLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELC 209 (722)
T ss_pred hhhcCChhhhcCcceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHh
Confidence 455666655333455555555 3344444433322 444555555555555555555555555554432 233333333
Q ss_pred CCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCC
Q 009053 224 MFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPP 266 (545)
Q Consensus 224 ~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp 266 (545)
.| .|..||++. +.+..+|-.|.+|+.|++|.|.+|.++.-|
T Consensus 210 ~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 210 SL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred CC-ceeeeeccc-CceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 22 233444432 223334444444444444444444444333
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.1e-09 Score=105.65 Aligned_cols=198 Identities=21% Similarity=0.194 Sum_probs=98.6
Q ss_pred hCCCCCcEEEeeCCCCccccC---CcCCCCCCCccEEEeCCCCCCcc------cccccCccEEEcCCCCCccccccc--c
Q 009053 16 SKMTELRFLKFYGSENKCMVS---SLEGVPFTEVRYFEWHQYPLKTL------DIHAENLVSLKMPGSKVKQLWDDV--Q 84 (545)
Q Consensus 16 ~~m~~Lr~L~l~~~~~~~l~~---~l~~l~~~~Lr~L~l~~~~l~~l------~~~~~~L~~L~L~~~~l~~l~~~~--~ 84 (545)
+++.+||...+.+. .+..+. ..+.++ ++|.|+++++-+... ...+++|+.|+++.|++...|... .
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~--~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILP--NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCC--cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 45556666666442 222222 344444 666666666544433 445566666666666655444332 3
Q ss_pred CCCCccEEEecCCCCCCCCCC--CCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCcc--CCccCCcccc
Q 009053 85 NLVNLKKIDLWYSKLLTKLPD--LSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTL--PTSIQSKYLK 160 (545)
Q Consensus 85 ~l~~L~~LdLs~~~~~~~~p~--l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~l--p~~~~l~~L~ 160 (545)
.+++|+.|.|+.|.+...--. +..+|+|+.|+|.+|.....-..+...+..|+.|||++|..+..- +....++.|+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 455666666666655421110 234556666666655433222223334455556666555433321 2222445555
Q ss_pred EEeecCCCCCCCCCccccCCccEEEcccccCccc--Ccc-----ccCCCCCCEEEecCCCC--CccccccccCCCCCcEE
Q 009053 161 RLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKEL--PSS-----IDRLSKLDTLKIHDCTS--LESLPSSLSMFKSLTSL 231 (545)
Q Consensus 161 ~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~l--p~~-----~~~l~~L~~L~L~~~~~--l~~lp~~l~~l~~L~~L 231 (545)
.|+++. |++.++ |+. ...+++|++|++..|+. ..++ ..+..+++|+.|
T Consensus 275 ~Lnls~----------------------tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl-~~l~~l~nlk~l 331 (505)
T KOG3207|consen 275 QLNLSS----------------------TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL-NHLRTLENLKHL 331 (505)
T ss_pred hhhccc----------------------cCcchhcCCCccchhhhcccccceeeecccCcccccccc-chhhccchhhhh
Confidence 554444 444432 221 34567778888777664 2222 224556677777
Q ss_pred EEeCCCCC
Q 009053 232 EIIYCPKL 239 (545)
Q Consensus 232 ~Ls~c~~~ 239 (545)
.+..+...
T Consensus 332 ~~~~n~ln 339 (505)
T KOG3207|consen 332 RITLNYLN 339 (505)
T ss_pred hccccccc
Confidence 76665543
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.63 E-value=1.1e-07 Score=96.64 Aligned_cols=157 Identities=23% Similarity=0.418 Sum_probs=108.5
Q ss_pred ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCc
Q 009053 181 IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGT 260 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n 260 (545)
++.|+++++.++.+|. -..+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+.|++.++
T Consensus 54 l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n 122 (426)
T PRK15386 54 SGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGS 122 (426)
T ss_pred CCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCC
Confidence 8899999999999882 34479999999999888888655 36899999999977777774 4777777765
Q ss_pred cC---cCCCccCCCCCCCcEEeccCCcCC--CcchhhhcCC-CCCCEEeccCCcCccccCCCCCCccEEeccCCC--CCC
Q 009053 261 AI---RRPPESLGQLSSLQILSLSDNSNL--ERAPESIRHL-SKLTSLFISDCKMLQTLPELPCNLHDLDASGCT--SLE 332 (545)
Q Consensus 261 ~l---~~lp~~l~~l~~L~~L~L~~n~~~--~~lp~~l~~l-~~L~~L~L~~c~~l~~ip~~~~sL~~L~l~~c~--~L~ 332 (545)
.. ..+|. +|+.|.+.++... ..+|. .+ ++|+.|++++|..+..-+.+|.+|+.|+++.+. .++
T Consensus 123 ~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~sLe 193 (426)
T PRK15386 123 ATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKTTWN 193 (426)
T ss_pred CCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcccCcccccccCcEEEeccccccccc
Confidence 54 34443 5777777554211 12221 12 589999999998664333488999999987642 333
Q ss_pred ccCCcccCCcccEEEEcCCCCCChhhH
Q 009053 333 ALPASLSSKFYLSVDLSNCLKLDLSEL 359 (545)
Q Consensus 333 ~l~~~~~~~~~~~l~l~~C~~L~~~~l 359 (545)
.....+. ... .+++.+|.+++.+.+
T Consensus 194 I~~~sLP-~nl-~L~f~n~lkL~~~~f 218 (426)
T PRK15386 194 ISFEGFP-DGL-DIDLQNSVLLSPDVF 218 (426)
T ss_pred Ccccccc-ccc-EechhhhcccCHHHh
Confidence 2222222 223 789999988876654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.63 E-value=2.6e-08 Score=90.37 Aligned_cols=61 Identities=30% Similarity=0.376 Sum_probs=17.2
Q ss_pred CCCCCcEEEecCccCcCCCccC-CCCCCCcEEeccCCcCCCcch--hhhcCCCCCCEEeccCCcC
Q 009053 248 NLKALEELRVEGTAIRRPPESL-GQLSSLQILSLSDNSNLERAP--ESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 248 ~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~~~~~lp--~~l~~l~~L~~L~L~~c~~ 309 (545)
.++.|++|++++|.++.+...+ ..+++|++|.+++| .+..+- ..+..+++|+.|++.+|+.
T Consensus 62 ~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 62 GLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp --TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred ChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 3444444444444444443322 23445555555555 333211 2344555555555555554
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.61 E-value=8.5e-08 Score=105.34 Aligned_cols=106 Identities=25% Similarity=0.370 Sum_probs=81.5
Q ss_pred CcEEEEeCCCCCCccccccCCCCCCcEEEecCccCc-CCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccC
Q 009053 228 LTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIR-RPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISD 306 (545)
Q Consensus 228 L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~ 306 (545)
++.|+|++|...+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..+.++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 677888888887888888888888888888888887 6777888888888888888844457888888888888888888
Q ss_pred CcCccccCCCC----CCccEEeccCCCCCCc
Q 009053 307 CKMLQTLPELP----CNLHDLDASGCTSLEA 333 (545)
Q Consensus 307 c~~l~~ip~~~----~sL~~L~l~~c~~L~~ 333 (545)
|...+.+|... .++..+++.+++.+..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccC
Confidence 88777777533 3455677777655543
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=2.6e-08 Score=90.30 Aligned_cols=119 Identities=22% Similarity=0.248 Sum_probs=35.2
Q ss_pred CccEEEeCCCCCCcc---cccccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCCC-CCCCCccEEEeeCC
Q 009053 45 EVRYFEWHQYPLKTL---DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDL-SLAQNLEILDLGGC 120 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l-~~l~~L~~L~L~~c 120 (545)
++|.|+++++.++.+ ...+.+|+.|+|++|.|+.+ +++..+++|+.|++++|.+....+.+ ..+|+|++|++++|
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 556666666666655 22345666666666666665 34556666666666666554422222 24566666666655
Q ss_pred CCCc--cccccccCCCCCCEEEecCCCCCCccCC---c-c-CCccccEEeecC
Q 009053 121 SSLT--ETHSSIQYLNKLEVLDLDRCESLRTLPT---S-I-QSKYLKRLVLRG 166 (545)
Q Consensus 121 ~~l~--~~~~~i~~l~~L~~L~L~~c~~l~~lp~---~-~-~l~~L~~L~L~~ 166 (545)
..-. ++ ..+..+++|+.|++.+|+... .+. . + .+|+|+.||-..
T Consensus 99 ~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 99 KISDLNEL-EPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp ---SCCCC-GGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEE
T ss_pred cCCChHHh-HHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEE
Confidence 4211 11 334556677777777664322 121 1 1 567777776544
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.58 E-value=2.5e-09 Score=103.59 Aligned_cols=186 Identities=22% Similarity=0.250 Sum_probs=95.9
Q ss_pred ccccCCCCccEEEecCCCCCCCCCC-----CCCCCCccEEEeeCCCCCcccc-------------ccccCCCCCCEEEec
Q 009053 81 DDVQNLVNLKKIDLWYSKLLTKLPD-----LSLAQNLEILDLGGCSSLTETH-------------SSIQYLNKLEVLDLD 142 (545)
Q Consensus 81 ~~~~~l~~L~~LdLs~~~~~~~~p~-----l~~l~~L~~L~L~~c~~l~~~~-------------~~i~~l~~L~~L~L~ 142 (545)
.++..+++|++||||+|-+....+. ++.+..|++|.|.+|..-..-- .-++.-++|+++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 4456778999999999887655432 5567888888888875432111 112333444444444
Q ss_pred CCCCCCccCCcc------CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcc-----cCccccCCCCCCEEEecC
Q 009053 143 RCESLRTLPTSI------QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKE-----LPSSIDRLSKLDTLKIHD 211 (545)
Q Consensus 143 ~c~~l~~lp~~~------~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~L~~ 211 (545)
.|. +...+... ..+. |+.+.+..|.|.. +...+.++++|+.|||.+
T Consensus 166 rNr-len~ga~~~A~~~~~~~~----------------------leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D 222 (382)
T KOG1909|consen 166 RNR-LENGGATALAEAFQSHPT----------------------LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD 222 (382)
T ss_pred ccc-cccccHHHHHHHHHhccc----------------------cceEEEecccccCchhHHHHHHHHhCCcceeeeccc
Confidence 432 22211110 1122 4444444444321 233455666666666666
Q ss_pred CCCCcc----ccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCCCccC-CCCCCCcEEeccCCcCC
Q 009053 212 CTSLES----LPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRPPESL-GQLSSLQILSLSDNSNL 286 (545)
Q Consensus 212 ~~~l~~----lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~~~ 286 (545)
|..... +...+..+++|+.|++++|.....-... +...+ ...++|+.|.+.+| .+
T Consensus 223 Ntft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a-------------------~~~al~~~~p~L~vl~l~gN-eI 282 (382)
T KOG1909|consen 223 NTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA-------------------FVDALKESAPSLEVLELAGN-EI 282 (382)
T ss_pred chhhhHHHHHHHHHhcccchheeecccccccccccHHH-------------------HHHHHhccCCCCceeccCcc-hh
Confidence 654422 2223334444555555444432221111 11111 23567777777777 44
Q ss_pred C-----cchhhhcCCCCCCEEeccCCcC
Q 009053 287 E-----RAPESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 287 ~-----~lp~~l~~l~~L~~L~L~~c~~ 309 (545)
+ .+..++...+.|+.|+|++|..
T Consensus 283 t~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 283 TRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4 3344556677788888888764
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=1.7e-08 Score=95.88 Aligned_cols=204 Identities=18% Similarity=0.177 Sum_probs=126.9
Q ss_pred ccccccCCCCccEEEecCCCCCCCCCCC-CCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCC-CCCCccCCcc-C
Q 009053 79 LWDDVQNLVNLKKIDLWYSKLLTKLPDL-SLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRC-ESLRTLPTSI-Q 155 (545)
Q Consensus 79 l~~~~~~l~~L~~LdLs~~~~~~~~p~l-~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c-~~l~~lp~~~-~ 155 (545)
+|-.+.-+++|+.+.+|+|..- .+-++ ..-|.|+.+...... ....| ++--++.+....-..- ...+.+-..+ .
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~-~~~~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTT-IQDVP-SLLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccc-ccccc-cccchhhhcCccCCCCCccCCceEEecch
Confidence 4444556677888888877532 22222 234677777776432 22221 2222222222211110 0011111112 4
Q ss_pred CccccEEeecCCCCCCCCCccccCC--ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEE
Q 009053 156 SKYLKRLVLRGCSNLKNFPEISSSG--IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEI 233 (545)
Q Consensus 156 l~~L~~L~L~~c~~l~~~p~~~~~~--L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 233 (545)
+..|++++++++. ++.+.+...-. ++.|+++.|++..+.. +..+++|+.|||++|.... +-.+-.++-+.++|.+
T Consensus 283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence 5678888888854 34433322111 8999999999988865 8899999999999976443 3333346778899999
Q ss_pred eCCCCCCccccccCCCCCCcEEEecCccCcCC--CccCCCCCCCcEEeccCCcCCCcchh
Q 009053 234 IYCPKLKRLPDELGNLKALEELRVEGTAIRRP--PESLGQLSSLQILSLSDNSNLERAPE 291 (545)
Q Consensus 234 s~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~n~~~~~lp~ 291 (545)
++|.... ...++.+-+|..||+++|+|.++ ...++++|.|+.+.|.+| -+..+|+
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N-Pl~~~vd 416 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN-PLAGSVD 416 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC-Cccccch
Confidence 8865422 23567788999999999999865 578999999999999999 5555553
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=2.4e-09 Score=105.94 Aligned_cols=273 Identities=18% Similarity=0.232 Sum_probs=161.8
Q ss_pred CCccEEEecCCCCCCCCCC---CCCCCCccEEEeeCCCCCcccc--ccccCCCCCCEEEecCCCCCCccCCc-c--CCcc
Q 009053 87 VNLKKIDLWYSKLLTKLPD---LSLAQNLEILDLGGCSSLTETH--SSIQYLNKLEVLDLDRCESLRTLPTS-I--QSKY 158 (545)
Q Consensus 87 ~~L~~LdLs~~~~~~~~p~---l~~l~~L~~L~L~~c~~l~~~~--~~i~~l~~L~~L~L~~c~~l~~lp~~-~--~l~~ 158 (545)
..||.|.+.++.-...-+- ...+||++.|.+.+|..+++.. ..-..+++|++|++..|..++...-. + .+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3577777777766554442 4567888888888887665421 22246788888888888777754322 2 6788
Q ss_pred ccEEeecCCCCCCCCC--ccccCC--ccEEEcccccCcc---cCccccCCCCCCEEEecCCCCCcccc--ccccCCCCCc
Q 009053 159 LKRLVLRGCSNLKNFP--EISSSG--IHRLDLTHVGIKE---LPSSIDRLSKLDTLKIHDCTSLESLP--SSLSMFKSLT 229 (545)
Q Consensus 159 L~~L~L~~c~~l~~~p--~~~~~~--L~~L~l~~~~i~~---lp~~~~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~ 229 (545)
|+.|+++.|+.+..-. ...... ++.+.+.|+.-.+ +-..-+.+..+..+++..|..+.+.. ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888888887665410 000000 4444444332111 21222345556667777776554332 2234567788
Q ss_pred EEEEeCCCCCCccc--cccCCCCCCcEEEecCcc-CcC--CCccCCCCCCCcEEeccCCcCCC--cchhhhcCCCCCCEE
Q 009053 230 SLEIIYCPKLKRLP--DELGNLKALEELRVEGTA-IRR--PPESLGQLSSLQILSLSDNSNLE--RAPESIRHLSKLTSL 302 (545)
Q Consensus 230 ~L~Ls~c~~~~~lp--~~l~~l~~L~~L~L~~n~-l~~--lp~~l~~l~~L~~L~L~~n~~~~--~lp~~l~~l~~L~~L 302 (545)
.|+.++|...+..+ .--.+..+|+.|.+++|. ++. +...-.+.+.|+.+++.++..+. ++-.--.+++.|+.|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 88888887765433 223456788888888875 231 12222467788888888884443 233334578889999
Q ss_pred eccCCcCcccc--------CCCCCCccEEeccCCCCCCccCCccc--CCcccEEEEcCCCCCChhhH
Q 009053 303 FISDCKMLQTL--------PELPCNLHDLDASGCTSLEALPASLS--SKFYLSVDLSNCLKLDLSEL 359 (545)
Q Consensus 303 ~L~~c~~l~~i--------p~~~~sL~~L~l~~c~~L~~l~~~~~--~~~~~~l~l~~C~~L~~~~l 359 (545)
.+++|..++.. ......|+.+.+++|+.+++-..... .+.++.+++.+|.....+.+
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 99988776553 12234677788888887665332111 12344567777766655555
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.52 E-value=4.7e-09 Score=101.76 Aligned_cols=130 Identities=17% Similarity=0.197 Sum_probs=87.6
Q ss_pred cCCCCCCEEEecCCCCCc----cccccccCCCCCcEEEEeCCCCCCc----cccccCCCCCCcEEEecCccCc-----CC
Q 009053 199 DRLSKLDTLKIHDCTSLE----SLPSSLSMFKSLTSLEIIYCPKLKR----LPDELGNLKALEELRVEGTAIR-----RP 265 (545)
Q Consensus 199 ~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~Ls~c~~~~~----lp~~l~~l~~L~~L~L~~n~l~-----~l 265 (545)
+.-++|+++....|..-. .+...+...+.|+.+.+..|.+... +...+..+++|+.|++.+|.++ .+
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 444566666666654321 1223345567788888877665422 3456778899999999998876 23
Q ss_pred CccCCCCCCCcEEeccCCcCCC-----cchhhh-cCCCCCCEEeccCCcCccc--------cCCCCCCccEEeccCCCC
Q 009053 266 PESLGQLSSLQILSLSDNSNLE-----RAPESI-RHLSKLTSLFISDCKMLQT--------LPELPCNLHDLDASGCTS 330 (545)
Q Consensus 266 p~~l~~l~~L~~L~L~~n~~~~-----~lp~~l-~~l~~L~~L~L~~c~~l~~--------ip~~~~sL~~L~l~~c~~ 330 (545)
...+..+++|++|++++| .+. .+...+ ...++|+.|.+.+|...+. +.+ -+.|..|++++|..
T Consensus 234 akaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 456777889999999999 665 222222 3478999999999977543 112 46899999999854
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=2e-07 Score=102.35 Aligned_cols=113 Identities=28% Similarity=0.380 Sum_probs=100.0
Q ss_pred CCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCc-CCCccCCCCCCCcEEecc
Q 009053 203 KLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIR-RPPESLGQLSSLQILSLS 281 (545)
Q Consensus 203 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~ 281 (545)
.++.|+|++|...+.+|..+..+++|+.|+|++|...+.+|..++.+++|+.|++++|.++ .+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999998999999999999999999999999999999999999999999999998 789999999999999999
Q ss_pred CCcCCCcchhhhcCC-CCCCEEeccCCcCccccCC
Q 009053 282 DNSNLERAPESIRHL-SKLTSLFISDCKMLQTLPE 315 (545)
Q Consensus 282 ~n~~~~~lp~~l~~l-~~L~~L~L~~c~~l~~ip~ 315 (545)
+|...+.+|..+... .++..+++.+|..+...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 995555899888764 5778899999887665554
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.7e-09 Score=101.18 Aligned_cols=155 Identities=23% Similarity=0.273 Sum_probs=73.7
Q ss_pred ccEEEcCCCCCc--cccccccCCCCccEEEecCCCCCCCCC-CCCCCCCccEEEeeCCCCCcccc--ccccCCCCCCEEE
Q 009053 66 LVSLKMPGSKVK--QLWDDVQNLVNLKKIDLWYSKLLTKLP-DLSLAQNLEILDLGGCSSLTETH--SSIQYLNKLEVLD 140 (545)
Q Consensus 66 L~~L~L~~~~l~--~l~~~~~~l~~L~~LdLs~~~~~~~~p-~l~~l~~L~~L~L~~c~~l~~~~--~~i~~l~~L~~L~ 140 (545)
|+.|||+.+.|+ ++...++.+.+||.|.|.++++...+- .+.+-.+|++|+|++|..+++.. -.+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 444555554444 333334455555555555444333222 13444455555555554443321 1233445555555
Q ss_pred ecCCCCCCccCCcc---CCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCcc
Q 009053 141 LDRCESLRTLPTSI---QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLES 217 (545)
Q Consensus 141 L~~c~~l~~lp~~~---~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~ 217 (545)
++.|...+..-..+ --+.|..|+++||..-- ....+..-..++++|..|||++|..+..
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl------------------~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL------------------QKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhh------------------hhhHHHHHHHhCCceeeeccccccccCc
Confidence 55554333221111 12334444444432110 0112222345688888888888766543
Q ss_pred -ccccccCCCCCcEEEEeCCCC
Q 009053 218 -LPSSLSMFKSLTSLEIIYCPK 238 (545)
Q Consensus 218 -lp~~l~~l~~L~~L~Ls~c~~ 238 (545)
.-..+.+++.|++|.++.|..
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hHHHHHHhcchheeeehhhhcC
Confidence 334466777777777777753
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.34 E-value=1.3e-08 Score=100.82 Aligned_cols=273 Identities=16% Similarity=0.185 Sum_probs=149.1
Q ss_pred CCcEEEeeCCCCcccc--CCcCCCCCCCccEEEeCCCC-CCcc-----cccccCccEEEcCC-CCCccc--cccccCCCC
Q 009053 20 ELRFLKFYGSENKCMV--SSLEGVPFTEVRYFEWHQYP-LKTL-----DIHAENLVSLKMPG-SKVKQL--WDDVQNLVN 88 (545)
Q Consensus 20 ~Lr~L~l~~~~~~~l~--~~l~~l~~~~Lr~L~l~~~~-l~~l-----~~~~~~L~~L~L~~-~~l~~l--~~~~~~l~~ 88 (545)
.||.|.+++...+... ..+..-. +++..|.+.++. ++.- ...+.+|+.|++.. ..++.. -.-...+++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~C-pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNC-PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhC-CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4666666653332221 2222222 355555555543 1111 34556666666655 334421 112345666
Q ss_pred ccEEEecCCCCCCCC---CCCCCCCCccEEEeeCCCCCcc--ccccccCCCCCCEEEecCCCCCCccCCcc---CCcccc
Q 009053 89 LKKIDLWYSKLLTKL---PDLSLAQNLEILDLGGCSSLTE--THSSIQYLNKLEVLDLDRCESLRTLPTSI---QSKYLK 160 (545)
Q Consensus 89 L~~LdLs~~~~~~~~---p~l~~l~~L~~L~L~~c~~l~~--~~~~i~~l~~L~~L~L~~c~~l~~lp~~~---~l~~L~ 160 (545)
|++|+++.|.....- +-..++.+++.+.++||...+. +-..-+.+..+..+++..|..++....+. .+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 777777666554331 1234555566666666654331 22222344555666666665554433222 456666
Q ss_pred EEeecCCCCCCCCCccccCCccEEEcccccCcccCccccCCCCCCEEEecCCCCCcccc--ccccCCCCCcEEEEeCCCC
Q 009053 161 RLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLP--SSLSMFKSLTSLEIIYCPK 238 (545)
Q Consensus 161 ~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~Ls~c~~ 238 (545)
.|+.++|..+++.+-. .-..++.+|+.|.+.+|+.....- .--.+.+.|+.+++.+|..
T Consensus 298 ~l~~s~~t~~~d~~l~-------------------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLW-------------------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred hhcccCCCCCchHHHH-------------------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 6666666655443211 113456777777777777654432 1224567777887777765
Q ss_pred CCc--cccccCCCCCCcEEEecCccCc------CCCccCCCCCCCcEEeccCCcCCC-cchhhhcCCCCCCEEeccCCcC
Q 009053 239 LKR--LPDELGNLKALEELRVEGTAIR------RPPESLGQLSSLQILSLSDNSNLE-RAPESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 239 ~~~--lp~~l~~l~~L~~L~L~~n~l~------~lp~~l~~l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~c~~ 309 (545)
... +...-.+++.|+.+.++.|... .+...-.....|+.+.|++++.+. ..-..+..+++|+.+++-+|..
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 433 2333456777888888766432 123333456778888888886665 3344567788888888888876
Q ss_pred ccc
Q 009053 310 LQT 312 (545)
Q Consensus 310 l~~ 312 (545)
...
T Consensus 439 vtk 441 (483)
T KOG4341|consen 439 VTK 441 (483)
T ss_pred hhh
Confidence 654
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.29 E-value=3.1e-06 Score=86.12 Aligned_cols=62 Identities=26% Similarity=0.498 Sum_probs=35.5
Q ss_pred CCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCccCCccccEEeecCCCCCCCCC
Q 009053 108 LAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTSIQSKYLKRLVLRGCSNLKNFP 174 (545)
Q Consensus 108 ~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~p 174 (545)
.+++++.|++++| .+..+| ....+|++|++++|..+..+|..+ .++|+.|.+++|..+..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc
Confidence 3566667777766 455555 122356666666666666666433 3456666666665554444
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2.5e-08 Score=94.64 Aligned_cols=177 Identities=22% Similarity=0.274 Sum_probs=91.4
Q ss_pred CccEEEeeCCCCCc-cccccccCCCCCCEEEecCCCCCCccCCcc-CCccccEEeecCCCCCCCCCccccCCccEEEccc
Q 009053 111 NLEILDLGGCSSLT-ETHSSIQYLNKLEVLDLDRCESLRTLPTSI-QSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTH 188 (545)
Q Consensus 111 ~L~~L~L~~c~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~ 188 (545)
.||.|+|+...... .++..+..+.+|+.|.+.|...-..+...+ .-..|+.|++++|+.++.+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-------------- 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-------------- 251 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH--------------
Confidence 46666666533221 234445566666666666655444443333 55666777777766554421
Q ss_pred ccCcccCccccCCCCCCEEEecCCCCCcccccc-cc-CCCCCcEEEEeCCCCC---CccccccCCCCCCcEEEecCcc-C
Q 009053 189 VGIKELPSSIDRLSKLDTLKIHDCTSLESLPSS-LS-MFKSLTSLEIIYCPKL---KRLPDELGNLKALEELRVEGTA-I 262 (545)
Q Consensus 189 ~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-l~-~l~~L~~L~Ls~c~~~---~~lp~~l~~l~~L~~L~L~~n~-l 262 (545)
+.-.+.+|+.|..|+++.|......-.. +. --+.|+.|+++||... ..+..-...+++|..|||++|. +
T Consensus 252 -----~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 252 -----LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred -----HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 1112445555555666555443322110 00 1134555666655432 1122223456666667766643 2
Q ss_pred c-CCCccCCCCCCCcEEeccCCcCCCcchh---hhcCCCCCCEEeccCCc
Q 009053 263 R-RPPESLGQLSSLQILSLSDNSNLERAPE---SIRHLSKLTSLFISDCK 308 (545)
Q Consensus 263 ~-~lp~~l~~l~~L~~L~L~~n~~~~~lp~---~l~~l~~L~~L~L~~c~ 308 (545)
+ .....+..++.|++|.++.|-.+ +|. .+...|+|.+|++-+|-
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 2 33345566777777777777332 222 24556777777777764
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.07 E-value=3.6e-06 Score=62.52 Aligned_cols=55 Identities=33% Similarity=0.541 Sum_probs=24.2
Q ss_pred CcEEEecCccCcCCC-ccCCCCCCCcEEeccCCcCCCcch-hhhcCCCCCCEEeccCC
Q 009053 252 LEELRVEGTAIRRPP-ESLGQLSSLQILSLSDNSNLERAP-ESIRHLSKLTSLFISDC 307 (545)
Q Consensus 252 L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~~lp-~~l~~l~~L~~L~L~~c 307 (545)
|++|++++|.++.+| ..+..+++|+.|++++| .+..++ ..+.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 444444444444443 23344444444444444 333333 23444455555555444
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.06 E-value=4.5e-06 Score=61.94 Aligned_cols=39 Identities=31% Similarity=0.551 Sum_probs=18.4
Q ss_pred ccCCCCCCcEEEecCccCcCCC-ccCCCCCCCcEEeccCC
Q 009053 245 ELGNLKALEELRVEGTAIRRPP-ESLGQLSSLQILSLSDN 283 (545)
Q Consensus 245 ~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n 283 (545)
.+.++++|++|++++|.++.++ ..+..+++|+.|++++|
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4444444444444444444442 23444555555555544
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=6.3e-07 Score=94.03 Aligned_cols=231 Identities=23% Similarity=0.241 Sum_probs=98.1
Q ss_pred CccEEEeCCCCCCcc---cccccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCC
Q 009053 45 EVRYFEWHQYPLKTL---DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCS 121 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~ 121 (545)
.++.+.+..+.++.. ...+.+|+.|++..|.|+++...+..+++|+.|+|++|.+. .+..+..++.|+.|++.+|.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccc-cccchhhccchhhheeccCc
Confidence 333444444444432 23344555555555555555433455555555555555432 23334444445555555543
Q ss_pred CCccccccccCCCCCCEEEecCCCCCCccCC--ccCCccccEEeecCCCCCCCCCccccCCccEEEcccccCcccCcccc
Q 009053 122 SLTETHSSIQYLNKLEVLDLDRCESLRTLPT--SIQSKYLKRLVLRGCSNLKNFPEISSSGIHRLDLTHVGIKELPSSID 199 (545)
Q Consensus 122 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~--~~~l~~L~~L~L~~c~~l~~~p~~~~~~L~~L~l~~~~i~~lp~~~~ 199 (545)
.. .+ ..+..++.|+.+++++|. +..+.. ...+.+++.+.+.++.....-.......+..+++..+.+..+-. +.
T Consensus 152 i~-~~-~~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~-l~ 227 (414)
T KOG0531|consen 152 IS-DI-SGLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG-LN 227 (414)
T ss_pred ch-hc-cCCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC-cc
Confidence 21 11 123335555555555543 222222 13445555555555432211111111112223444444433211 11
Q ss_pred CCC--CCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCC----Cc-cCCCC
Q 009053 200 RLS--KLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRP----PE-SLGQL 272 (545)
Q Consensus 200 ~l~--~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~l----p~-~l~~l 272 (545)
.+. +|+.++++++.... .+..+..++.+..|++..+..... ..+.....+..+....+.+... .. .....
T Consensus 228 ~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (414)
T KOG0531|consen 228 ELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAA 304 (414)
T ss_pred cchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccc
Confidence 111 25555555543322 113344455555555555443221 1122333444444555444311 11 14455
Q ss_pred CCCcEEeccCC
Q 009053 273 SSLQILSLSDN 283 (545)
Q Consensus 273 ~~L~~L~L~~n 283 (545)
+.++...+..+
T Consensus 305 ~~~~~~~~~~~ 315 (414)
T KOG0531|consen 305 PTLVTLTLELN 315 (414)
T ss_pred ccccccccccC
Confidence 66777777766
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=7.5e-07 Score=93.47 Aligned_cols=32 Identities=47% Similarity=0.729 Sum_probs=16.3
Q ss_pred CcEEEecCccCcCCCccCCCCCCCcEEeccCC
Q 009053 252 LEELRVEGTAIRRPPESLGQLSSLQILSLSDN 283 (545)
Q Consensus 252 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n 283 (545)
|+.+++++|.+..++..+..+..+..|++.+|
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhc
Confidence 45555555555544444444555555555544
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=2.3e-06 Score=81.61 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=69.0
Q ss_pred ccEEEeCCCCCCcc------cccccCccEEEcCCCCCcc---ccccccCCCCccEEEecCCCCCCCCCCC-CCCCCccEE
Q 009053 46 VRYFEWHQYPLKTL------DIHAENLVSLKMPGSKVKQ---LWDDVQNLVNLKKIDLWYSKLLTKLPDL-SLAQNLEIL 115 (545)
Q Consensus 46 Lr~L~l~~~~l~~l------~~~~~~L~~L~L~~~~l~~---l~~~~~~l~~L~~LdLs~~~~~~~~p~l-~~l~~L~~L 115 (545)
+..|.+.++.+... ...++.+++|+|.+|.|.. +..-+.++|.|+.|+|+.|++...+..+ ....||+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 34666677766655 4467889999999998874 3334589999999999999887666544 366788899
Q ss_pred EeeCCCCC-ccccccccCCCCCCEEEecCC
Q 009053 116 DLGGCSSL-TETHSSIQYLNKLEVLDLDRC 144 (545)
Q Consensus 116 ~L~~c~~l-~~~~~~i~~l~~L~~L~L~~c 144 (545)
.|.|...- +....++..+|+++.|.++.|
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 88875321 233445566777777777665
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.89 E-value=1.4e-07 Score=99.39 Aligned_cols=123 Identities=21% Similarity=0.267 Sum_probs=71.7
Q ss_pred ccEEEcccccCcccCccccCCCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCcccc-ccCCCCCCcEEEecC
Q 009053 181 IHRLDLTHVGIKELPSSIDRLSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPD-ELGNLKALEELRVEG 259 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~-~l~~l~~L~~L~L~~ 259 (545)
|...+.+.|++..+..++.-++.|+.|+|+.|+....- .+..++.|++|||+.|... .+|. ....+. |+.|.+++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence 55666667777777777777777777777776654332 4556677777777765432 2332 122222 66667777
Q ss_pred ccCcCCCccCCCCCCCcEEeccCCcCCCcch--hhhcCCCCCCEEeccCCcC
Q 009053 260 TAIRRPPESLGQLSSLQILSLSDNSNLERAP--ESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 260 n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp--~~l~~l~~L~~L~L~~c~~ 309 (545)
|.++++- .+.++.+|+.||++.| .+.... ..+..+..|+.|+|.+|+.
T Consensus 242 N~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6666543 3556666777777766 433211 1244455666666666653
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.58 E-value=2.6e-06 Score=90.07 Aligned_cols=90 Identities=24% Similarity=0.168 Sum_probs=40.1
Q ss_pred CCCccccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCccccccccCCCCCCEEEecCCCCCCccCCc
Q 009053 74 SKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETHSSIQYLNKLEVLDLDRCESLRTLPTS 153 (545)
Q Consensus 74 ~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~ 153 (545)
|.+..+-..++-++.|+.|||++|++...- .+..++.|++|+|+.|. +..+|..-..-.+|+.|++++| -++.+-..
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN-~l~tL~gi 250 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNN-ALTTLRGI 250 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeeccc-HHHhhhhH
Confidence 333333333444555555555555543322 44455555555555542 2333321111122555555553 23333332
Q ss_pred cCCccccEEeecC
Q 009053 154 IQSKYLKRLVLRG 166 (545)
Q Consensus 154 ~~l~~L~~L~L~~ 166 (545)
-++++|+.|+++.
T Consensus 251 e~LksL~~LDlsy 263 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSY 263 (1096)
T ss_pred HhhhhhhccchhH
Confidence 2555555555555
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.57 E-value=8.2e-05 Score=50.97 Aligned_cols=33 Identities=39% Similarity=0.590 Sum_probs=14.5
Q ss_pred CCcEEEecCccCcCCCccCCCCCCCcEEeccCC
Q 009053 251 ALEELRVEGTAIRRPPESLGQLSSLQILSLSDN 283 (545)
Q Consensus 251 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n 283 (545)
+|++|++++|+++.+|..++.+++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 344444444444444444444444444444444
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.40 E-value=0.00018 Score=49.21 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=28.2
Q ss_pred cCccEEEcCCCCCccccccccCCCCccEEEecCCCCC
Q 009053 64 ENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLL 100 (545)
Q Consensus 64 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~ 100 (545)
++|++|++++|+|+.++..+.+|++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4688888888888888777888888888888888654
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.37 E-value=2.1e-05 Score=84.10 Aligned_cols=143 Identities=32% Similarity=0.402 Sum_probs=72.9
Q ss_pred CCCCCEEEecCCCCC--ccccccccCCCCCcEEEEeCCCCCCc--cccccCCCCCCcEEEecCccCcCCCccCCCCCCCc
Q 009053 201 LSKLDTLKIHDCTSL--ESLPSSLSMFKSLTSLEIIYCPKLKR--LPDELGNLKALEELRVEGTAIRRPPESLGQLSSLQ 276 (545)
Q Consensus 201 l~~L~~L~L~~~~~l--~~lp~~l~~l~~L~~L~Ls~c~~~~~--lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 276 (545)
+++|+.|.+.+|..+ ..+-.....+++|++|++++|...+. +.....++++|+.|.+.... .+..++
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~---------~c~~l~ 338 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN---------GCPSLT 338 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC---------CCccHH
Confidence 677777777777642 12233345667777777777766522 22223335555554433211 134455
Q ss_pred EEeccCCcCCC---cchhhhcCCCCCCEEeccCCcCccccCCCCCCccEEeccCCCCC-CccCCcccCCc-ccEEEEcCC
Q 009053 277 ILSLSDNSNLE---RAPESIRHLSKLTSLFISDCKMLQTLPELPCNLHDLDASGCTSL-EALPASLSSKF-YLSVDLSNC 351 (545)
Q Consensus 277 ~L~L~~n~~~~---~lp~~l~~l~~L~~L~L~~c~~l~~ip~~~~sL~~L~l~~c~~L-~~l~~~~~~~~-~~~l~l~~C 351 (545)
.+.+.++.... .....+..+++++.+.+..|. ..... ..+.+.+|+.+ ..+........ ...+++..|
T Consensus 339 ~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~------~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~ 411 (482)
T KOG1947|consen 339 DLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG------LELSLRGCPNLTESLELRLCRSDSLRVLNLSDC 411 (482)
T ss_pred HHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc------hHHHhcCCcccchHHHHHhccCCccceEecccC
Confidence 55554442211 122235566667666666665 32211 14566777777 33222211111 347778888
Q ss_pred CCCChhhH
Q 009053 352 LKLDLSEL 359 (545)
Q Consensus 352 ~~L~~~~l 359 (545)
...+...+
T Consensus 412 ~~~t~~~l 419 (482)
T KOG1947|consen 412 RLVTDKGL 419 (482)
T ss_pred ccccccch
Confidence 77766444
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=0.00025 Score=78.24 Aligned_cols=126 Identities=22% Similarity=0.217 Sum_probs=62.7
Q ss_pred ccEEEcccccCc--ccCcccc-CCCCCCEEEecCCCCC-ccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEE
Q 009053 181 IHRLDLTHVGIK--ELPSSID-RLSKLDTLKIHDCTSL-ESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELR 256 (545)
Q Consensus 181 L~~L~l~~~~i~--~lp~~~~-~l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~ 256 (545)
|+.|+++|...- +.|..++ .+|.|+.|.+++-... ..+.....++|+|..||+++++.... ..++++++|+.|.
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLS 201 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHh
Confidence 666666664321 2233333 3666666666663321 22233344566666666666544332 4555666666666
Q ss_pred ecCccCcCC--CccCCCCCCCcEEeccCCcCCCc--ch----hhhcCCCCCCEEeccCCc
Q 009053 257 VEGTAIRRP--PESLGQLSSLQILSLSDNSNLER--AP----ESIRHLSKLTSLFISDCK 308 (545)
Q Consensus 257 L~~n~l~~l--p~~l~~l~~L~~L~L~~n~~~~~--lp----~~l~~l~~L~~L~L~~c~ 308 (545)
+.+-.+... -..+.++++|+.||+|....... +. +.-..||+|+.||.++..
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 655444421 23455566666666665532221 11 122345666666666543
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.18 E-value=0.00018 Score=79.46 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=25.4
Q ss_pred cccccCccEEEcCCCCCcc--ccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEee
Q 009053 60 DIHAENLVSLKMPGSKVKQ--LWDDVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLG 118 (545)
Q Consensus 60 ~~~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~ 118 (545)
...+|.|+.|.+++-.+.. +-.-..++|+|..||+|++.... +..++.++||+.|.+.
T Consensus 144 g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-LSGISRLKNLQVLSMR 203 (699)
T ss_pred hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-cHHHhccccHHHHhcc
Confidence 3444555555555543321 11223445555555555543321 2334445555555444
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.18 E-value=3e-05 Score=82.90 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=25.3
Q ss_pred cCccccCCCCCCEEEecCCCCCcc--ccccccCCCCCcEEEEeC
Q 009053 194 LPSSIDRLSKLDTLKIHDCTSLES--LPSSLSMFKSLTSLEIIY 235 (545)
Q Consensus 194 lp~~~~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~Ls~ 235 (545)
+-.....++.|+.|+++.|..... +.....++++|+.|.+..
T Consensus 287 l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 287 LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 333455677888888888877532 333344566666655444
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.13 E-value=2.9e-05 Score=66.05 Aligned_cols=105 Identities=24% Similarity=0.299 Sum_probs=65.8
Q ss_pred CCCEEEecCCCCC--ccccccccCCCCCcEEEEeCCCCCCccccccC-CCCCCcEEEecCccCcCCCccCCCCCCCcEEe
Q 009053 203 KLDTLKIHDCTSL--ESLPSSLSMFKSLTSLEIIYCPKLKRLPDELG-NLKALEELRVEGTAIRRPPESLGQLSSLQILS 279 (545)
Q Consensus 203 ~L~~L~L~~~~~l--~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~-~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 279 (545)
.+..++|++|... ...+..+.....|+..++++|.. ..+|+.+. ..+.++.|++++|.++.+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 3445556665432 22333344455566666666543 44454433 34567777788888888887777788888888
Q ss_pred ccCCcCCCcchhhhcCCCCCCEEeccCCcC
Q 009053 280 LSDNSNLERAPESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 280 L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~ 309 (545)
++.| .+...|..+..+.+|..|+..++.+
T Consensus 107 l~~N-~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 107 LRFN-PLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cccC-ccccchHHHHHHHhHHHhcCCCCcc
Confidence 8877 6666676666677777777766553
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.04 E-value=0.0014 Score=59.61 Aligned_cols=105 Identities=20% Similarity=0.236 Sum_probs=68.7
Q ss_pred cccccCccEEEcCCCCCccccccccCCCCccEEEecCCCCCCCCCCCC-CCCCccEEEeeCCCCCcccc--ccccCCCCC
Q 009053 60 DIHAENLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYSKLLTKLPDLS-LAQNLEILDLGGCSSLTETH--SSIQYLNKL 136 (545)
Q Consensus 60 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~~~~~~~p~l~-~l~~L~~L~L~~c~~l~~~~--~~i~~l~~L 136 (545)
..-..+...++|..|.+..+ ..+..+++|.+|.|..|.+...-|++. .+|+|..|.|.+|.. .++. .-+..+|+|
T Consensus 38 g~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 38 GATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKL 115 (233)
T ss_pred cccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCcc
Confidence 33445677788888887766 346788888888888888877777755 457788888887643 2221 234567788
Q ss_pred CEEEecCCCCCCc--cCCcc--CCccccEEeecC
Q 009053 137 EVLDLDRCESLRT--LPTSI--QSKYLKRLVLRG 166 (545)
Q Consensus 137 ~~L~L~~c~~l~~--lp~~~--~l~~L~~L~L~~ 166 (545)
+.|.+-+|..... ....+ .+++|+.|++.+
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 8888877643321 11111 567777777765
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.87 E-value=0.0021 Score=58.58 Aligned_cols=82 Identities=21% Similarity=0.209 Sum_probs=42.8
Q ss_pred CCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecCccCcCC--CccCCCCCCCcEEeccCCcCCCcchh----hhcCCC
Q 009053 224 MFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEGTAIRRP--PESLGQLSSLQILSLSDNSNLERAPE----SIRHLS 297 (545)
Q Consensus 224 ~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~n~~~~~lp~----~l~~l~ 297 (545)
.++.|.+|.+.+|.++..-|..-.-+++|..|.+.+|.+.++ ...+..++.|+.|.+-+| .++.-.. .+..++
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeEEEEecC
Confidence 345555555555444433333333345566666666666544 234556667777776666 3332221 245566
Q ss_pred CCCEEeccC
Q 009053 298 KLTSLFISD 306 (545)
Q Consensus 298 ~L~~L~L~~ 306 (545)
+|+.||..+
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 666666654
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.00036 Score=66.94 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=44.0
Q ss_pred CCCCcEEEecCccCcCC--CccCCCCCCCcEEeccCCcCCCcch--hhhcCCCCCCEEeccCCcCccccC
Q 009053 249 LKALEELRVEGTAIRRP--PESLGQLSSLQILSLSDNSNLERAP--ESIRHLSKLTSLFISDCKMLQTLP 314 (545)
Q Consensus 249 l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~n~~~~~lp--~~l~~l~~L~~L~L~~c~~l~~ip 314 (545)
++++..+.+..|.+... -.....++.+..|+|+.+ ++.++. +.+.+++.|..|.+++++....+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 45666666777766533 234455677778888888 676543 357788888888888887766543
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.54 E-value=0.00086 Score=63.64 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=23.3
Q ss_pred ccCCCCccEEEecCCCCCCCCCC-----CCCCCCccEEEeeCCC
Q 009053 83 VQNLVNLKKIDLWYSKLLTKLPD-----LSLAQNLEILDLGGCS 121 (545)
Q Consensus 83 ~~~l~~L~~LdLs~~~~~~~~p~-----l~~l~~L~~L~L~~c~ 121 (545)
+-.||+|+.++||+|.+....|. ++..++|++|.+++|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 45666666666666666555442 4555666666666553
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.51 E-value=0.00093 Score=63.40 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=57.1
Q ss_pred ccCCCCCCEEEecCCCCCcccccc----ccCCCCCcEEEEeCCCCCCcccc-------------ccCCCCCCcEEEecCc
Q 009053 198 IDRLSKLDTLKIHDCTSLESLPSS----LSMFKSLTSLEIIYCPKLKRLPD-------------ELGNLKALEELRVEGT 260 (545)
Q Consensus 198 ~~~l~~L~~L~L~~~~~l~~lp~~----l~~l~~L~~L~Ls~c~~~~~lp~-------------~l~~l~~L~~L~L~~n 260 (545)
+..|++|+..+|+.|..-...|.. +.+-+.|++|.+++|........ ...+-+.|+.+....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 445666666666666554444332 34455666666666543211111 1233456666666666
Q ss_pred cCcCCCc-----cCCCCCCCcEEeccCCcCCC-c-----chhhhcCCCCCCEEeccCCcC
Q 009053 261 AIRRPPE-----SLGQLSSLQILSLSDNSNLE-R-----APESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 261 ~l~~lp~-----~l~~l~~L~~L~L~~n~~~~-~-----lp~~l~~l~~L~~L~L~~c~~ 309 (545)
++...+. .+..-..|+.+.+..| .+. . +-..+..+.+|+.|+|.+|..
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 6654432 1222246666666666 333 1 112345566777777776654
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.38 E-value=0.016 Score=49.72 Aligned_cols=102 Identities=20% Similarity=0.324 Sum_probs=48.7
Q ss_pred ccChhhhhCCCCCcEEEeeCCCCcccc-CCcCCCCCCCccEEEeCCCCCCcc----cccccCccEEEcCCCCCcccc-cc
Q 009053 9 QINPYTFSKMTELRFLKFYGSENKCMV-SSLEGVPFTEVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLW-DD 82 (545)
Q Consensus 9 ~~~~~~f~~m~~Lr~L~l~~~~~~~l~-~~l~~l~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~-~~ 82 (545)
.+...+|.++++|+.+.+.. ....++ ..+...+ +|+.+++.+. +..+ ...+.+|+.+.++. .+..+. ..
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~--~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCT--SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-T--T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccc--cccccccccc-ccccceeeeecccccccccccc-ccccccccc
Confidence 46778999999999999965 344555 4566665 7888877664 5555 33444667777654 444333 23
Q ss_pred ccCCCCccEEEecCCCCCCCCC--CCCCCCCccEEEee
Q 009053 83 VQNLVNLKKIDLWYSKLLTKLP--DLSLAQNLEILDLG 118 (545)
Q Consensus 83 ~~~l~~L~~LdLs~~~~~~~~p--~l~~l~~L~~L~L~ 118 (545)
+..+++|+.+++..+ ...++ .+... +|+.+.+.
T Consensus 77 F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 455666666666442 12222 24444 55555554
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.95 E-value=0.00038 Score=59.37 Aligned_cols=84 Identities=20% Similarity=0.372 Sum_probs=38.7
Q ss_pred ccEEEcccccCcccCccccC-CCCCCEEEecCCCCCccccccccCCCCCcEEEEeCCCCCCccccccCCCCCCcEEEecC
Q 009053 181 IHRLDLTHVGIKELPSSIDR-LSKLDTLKIHDCTSLESLPSSLSMFKSLTSLEIIYCPKLKRLPDELGNLKALEELRVEG 259 (545)
Q Consensus 181 L~~L~l~~~~i~~lp~~~~~-l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~~~~lp~~l~~l~~L~~L~L~~ 259 (545)
|...++++|.++.+|..+.. ++.++.|++++| .+..+|..+..++.|+.|+++.|+. ...|..+..+.+|..|+..+
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l-~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPL-NAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCcc-ccchHHHHHHHhHHHhcCCC
Confidence 55566666666666655433 335555555553 2333444444444444444444332 22333333344444444444
Q ss_pred ccCcCCC
Q 009053 260 TAIRRPP 266 (545)
Q Consensus 260 n~l~~lp 266 (545)
|.+.++|
T Consensus 133 na~~eid 139 (177)
T KOG4579|consen 133 NARAEID 139 (177)
T ss_pred CccccCc
Confidence 4444333
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.00029 Score=66.95 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=42.2
Q ss_pred CccEEEeCCCCCCcc--cccccCccEEEcCCCCCccccc--cccCCCCccEEEecCCCCCCCCCC------CCCCCCccE
Q 009053 45 EVRYFEWHQYPLKTL--DIHAENLVSLKMPGSKVKQLWD--DVQNLVNLKKIDLWYSKLLTKLPD------LSLAQNLEI 114 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~~~l~~l~~--~~~~l~~L~~LdLs~~~~~~~~p~------l~~l~~L~~ 114 (545)
.|+.|.++-|.++++ ...+++|.+|+|+.|.|..+-+ -++++++|+.|.|..|...+.-+. +..+|||++
T Consensus 42 ~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkK 121 (388)
T KOG2123|consen 42 LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKK 121 (388)
T ss_pred cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchh
Confidence 666666666666666 5566666666666666665432 346666666666666655444331 344555555
Q ss_pred EE
Q 009053 115 LD 116 (545)
Q Consensus 115 L~ 116 (545)
|+
T Consensus 122 LD 123 (388)
T KOG2123|consen 122 LD 123 (388)
T ss_pred cc
Confidence 54
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.66 E-value=0.0048 Score=58.50 Aligned_cols=83 Identities=27% Similarity=0.335 Sum_probs=41.8
Q ss_pred CccEEEcCCCCCccccccccCCCCccEEEecCC--CCCCCCCC-CCCCCCccEEEeeCCCCCc-cccccccCCCCCCEEE
Q 009053 65 NLVSLKMPGSKVKQLWDDVQNLVNLKKIDLWYS--KLLTKLPD-LSLAQNLEILDLGGCSSLT-ETHSSIQYLNKLEVLD 140 (545)
Q Consensus 65 ~L~~L~L~~~~l~~l~~~~~~l~~L~~LdLs~~--~~~~~~p~-l~~l~~L~~L~L~~c~~l~-~~~~~i~~l~~L~~L~ 140 (545)
.|..|++.+..++.+ ..+..+++||.|++|.| .....++. ...+|+|++|++++|..-. .-..-+..+.+|..|+
T Consensus 44 ~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 344444444444433 23445666677777666 33333332 2344677777777664321 1112234455666667
Q ss_pred ecCCCCCC
Q 009053 141 LDRCESLR 148 (545)
Q Consensus 141 L~~c~~l~ 148 (545)
+.+|....
T Consensus 123 l~n~~~~~ 130 (260)
T KOG2739|consen 123 LFNCSVTN 130 (260)
T ss_pred cccCCccc
Confidence 66665443
No 68
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=95.57 E-value=0.0076 Score=33.20 Aligned_cols=20 Identities=55% Similarity=0.997 Sum_probs=18.0
Q ss_pred CccEEEcCCCCCcccccccc
Q 009053 65 NLVSLKMPGSKVKQLWDDVQ 84 (545)
Q Consensus 65 ~L~~L~L~~~~l~~l~~~~~ 84 (545)
+|++|+|++++++++|++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999998864
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.37 E-value=0.013 Score=55.56 Aligned_cols=84 Identities=25% Similarity=0.245 Sum_probs=44.0
Q ss_pred CCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCC--CCCccccccccCCCCCCEEEecCCCC--CCccCCccCCccccE
Q 009053 86 LVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGC--SSLTETHSSIQYLNKLEVLDLDRCES--LRTLPTSIQSKYLKR 161 (545)
Q Consensus 86 l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c--~~l~~~~~~i~~l~~L~~L~L~~c~~--l~~lp~~~~l~~L~~ 161 (545)
+..|+.+++.++..++ +..+-.+|+|++|.++.| .....++.....+++|++|++++|+. +.+++..-.+++|..
T Consensus 42 ~~~le~ls~~n~gltt-~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT-LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceee-cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3344444444433322 233445667777777666 33344444445557777777776543 223333335666666
Q ss_pred EeecCCCCC
Q 009053 162 LVLRGCSNL 170 (545)
Q Consensus 162 L~L~~c~~l 170 (545)
|++.+|+..
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 666666543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.00092 Score=63.64 Aligned_cols=65 Identities=20% Similarity=0.164 Sum_probs=28.9
Q ss_pred cCCCCccEEEecCCCCCCCCCCCCCCCCccEEEeeCCCCCcccc--ccccCCCCCCEEEecCCCCCCcc
Q 009053 84 QNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLGGCSSLTETH--SSIQYLNKLEVLDLDRCESLRTL 150 (545)
Q Consensus 84 ~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~~c~~l~~~~--~~i~~l~~L~~L~L~~c~~l~~l 150 (545)
..|+.|+.|.||-|++.+ +..+..+++|++|.|..|.. ..+. ..+.++++|+.|+|..|...+.-
T Consensus 38 ~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTLWLDENPCCGEA 104 (388)
T ss_pred HhcccceeEEeecccccc-chhHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhHhhccCCccccc
Confidence 344444444444444322 22234444555555544321 1111 23445566666666665544433
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.58 E-value=0.36 Score=41.12 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=28.2
Q ss_pred CccEEEeCCCCCCcc----cccccCccEEEcCCCCCccccc-cccCCCCccEEEecCCCCCCCCCCCCCCCCccEEEee
Q 009053 45 EVRYFEWHQYPLKTL----DIHAENLVSLKMPGSKVKQLWD-DVQNLVNLKKIDLWYSKLLTKLPDLSLAQNLEILDLG 118 (545)
Q Consensus 45 ~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~LdLs~~~~~~~~p~l~~l~~L~~L~L~ 118 (545)
+|+.+.+.. .++.+ ...+.+|+++.++.+ ++.++. .+.++++|+.+.+.++........+..+++|+.+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccccccccccccccccccccccccC
Confidence 566666553 34444 233345666666553 444432 3455555666666431111111124455566666554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.51 E-value=0.052 Score=30.88 Aligned_cols=17 Identities=53% Similarity=0.712 Sum_probs=7.4
Q ss_pred CcEEeccCCcCCCcchhh
Q 009053 275 LQILSLSDNSNLERAPES 292 (545)
Q Consensus 275 L~~L~L~~n~~~~~lp~~ 292 (545)
|++|+|++| .++.+|..
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 344444444 33444443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.40 E-value=0.07 Score=30.34 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=11.1
Q ss_pred CccEEEcCCCCCcccccccc
Q 009053 65 NLVSLKMPGSKVKQLWDDVQ 84 (545)
Q Consensus 65 ~L~~L~L~~~~l~~l~~~~~ 84 (545)
+|++|++++|+++.+|..++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35566666666665555443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.95 E-value=0.2 Score=26.45 Aligned_cols=9 Identities=56% Similarity=0.800 Sum_probs=3.4
Q ss_pred CcEEeccCC
Q 009053 275 LQILSLSDN 283 (545)
Q Consensus 275 L~~L~L~~n 283 (545)
|+.|+|++|
T Consensus 3 L~~L~l~~n 11 (17)
T PF13504_consen 3 LRTLDLSNN 11 (17)
T ss_dssp -SEEEETSS
T ss_pred cCEEECCCC
Confidence 344444444
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.08 E-value=0.13 Score=47.27 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=19.3
Q ss_pred CCCCcEEeccCCcCCC-cchhhhcCCCCCCEEeccC
Q 009053 272 LSSLQILSLSDNSNLE-RAPESIRHLSKLTSLFISD 306 (545)
Q Consensus 272 l~~L~~L~L~~n~~~~-~lp~~l~~l~~L~~L~L~~ 306 (545)
.++|+.|+|++|..++ .--..+..+++|+.|.|.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 3566666666665555 2334455556666555554
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.62 E-value=0.62 Score=42.87 Aligned_cols=61 Identities=31% Similarity=0.520 Sum_probs=40.9
Q ss_pred CCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCccc-----cCCCCCCccEEeccCCCCCCcc
Q 009053 274 SLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKMLQT-----LPELPCNLHDLDASGCTSLEAL 334 (545)
Q Consensus 274 ~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l~~-----ip~~~~sL~~L~l~~c~~L~~l 334 (545)
.++.++-+++.....--+.+.++++++.|.+.+|+.... +....++|+.|++++|+.+++-
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 456666666633334445667777888888888877654 3446678888888888777653
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.19 E-value=1.8 Score=25.47 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=7.4
Q ss_pred CCcEEEecCccCcCCC
Q 009053 251 ALEELRVEGTAIRRPP 266 (545)
Q Consensus 251 ~L~~L~L~~n~l~~lp 266 (545)
+|+.|++++|.++.+|
T Consensus 3 ~L~~L~L~~N~l~~lp 18 (26)
T smart00369 3 NLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCEEECCCCcCCcCC
Confidence 4444444444444444
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.19 E-value=1.8 Score=25.47 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=7.4
Q ss_pred CCcEEEecCccCcCCC
Q 009053 251 ALEELRVEGTAIRRPP 266 (545)
Q Consensus 251 ~L~~L~L~~n~l~~lp 266 (545)
+|+.|++++|.++.+|
T Consensus 3 ~L~~L~L~~N~l~~lp 18 (26)
T smart00370 3 NLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCEEECCCCcCCcCC
Confidence 4444444444444444
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.61 E-value=0.099 Score=48.92 Aligned_cols=84 Identities=8% Similarity=0.012 Sum_probs=37.3
Q ss_pred hhhhhCCCCCcEEEeeCCCCccccCCcCCCCCCCccEEEeCCCCCCcc---cccccCccEEEcCCCCCccccccccCCCC
Q 009053 12 PYTFSKMTELRFLKFYGSENKCMVSSLEGVPFTEVRYFEWHQYPLKTL---DIHAENLVSLKMPGSKVKQLWDDVQNLVN 88 (545)
Q Consensus 12 ~~~f~~m~~Lr~L~l~~~~~~~l~~~l~~l~~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~~~l~~l~~~~~~l~~ 88 (545)
...+....+-+.||++.|..+.+-..+..+. .|..|+++.+.++.+ ......++.+++..|+.++.|...+..++
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t--~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVNLGKNFSILT--RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred hhhhhccceeeeehhhhhHHHhhccchHHHH--HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCC
Confidence 3334444555555555444444444444443 444444444444433 22333344444444444444444444444
Q ss_pred ccEEEecCC
Q 009053 89 LKKIDLWYS 97 (545)
Q Consensus 89 L~~LdLs~~ 97 (545)
++++++-.+
T Consensus 113 ~k~~e~k~~ 121 (326)
T KOG0473|consen 113 PKKNEQKKT 121 (326)
T ss_pred cchhhhccC
Confidence 444444443
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=65.83 E-value=0.044 Score=58.17 Aligned_cols=114 Identities=24% Similarity=0.318 Sum_probs=52.7
Q ss_pred ccccCCCCCCEEEecCCCCCc----ccccccc----CCCCCcEEEEeCCCCCCc----cccccCCCCC-CcEEEecCccC
Q 009053 196 SSIDRLSKLDTLKIHDCTSLE----SLPSSLS----MFKSLTSLEIIYCPKLKR----LPDELGNLKA-LEELRVEGTAI 262 (545)
Q Consensus 196 ~~~~~l~~L~~L~L~~~~~l~----~lp~~l~----~l~~L~~L~Ls~c~~~~~----lp~~l~~l~~-L~~L~L~~n~l 262 (545)
..+.....++.++++.|.... .++..+. ...++++|.+++|..+.. +...+...+. +.++++..|.+
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 334445566666666655431 1112222 344556666666554321 1122333333 45556655554
Q ss_pred cCC-----CccCCCC-CCCcEEeccCCcCCC----cchhhhcCCCCCCEEeccCCcC
Q 009053 263 RRP-----PESLGQL-SSLQILSLSDNSNLE----RAPESIRHLSKLTSLFISDCKM 309 (545)
Q Consensus 263 ~~l-----p~~l~~l-~~L~~L~L~~n~~~~----~lp~~l~~l~~L~~L~L~~c~~ 309 (545)
... ...+..+ ..++.++++.|.... .+...+..++.++.+.+++|..
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 421 2233333 455666666662222 3344455555666666655544
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=63.87 E-value=0.06 Score=57.16 Aligned_cols=34 Identities=32% Similarity=0.356 Sum_probs=20.6
Q ss_pred CCCcEEEecCccCcC-----CCccCCCCCCCcEEeccCC
Q 009053 250 KALEELRVEGTAIRR-----PPESLGQLSSLQILSLSDN 283 (545)
Q Consensus 250 ~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n 283 (545)
..++.+++..|.+.+ +...+..++.+++|.++.|
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 455666666666552 2344555667777777777
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.62 E-value=4.8 Score=23.92 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=11.4
Q ss_pred cCccEEEcCCCCCccccc
Q 009053 64 ENLVSLKMPGSKVKQLWD 81 (545)
Q Consensus 64 ~~L~~L~L~~~~l~~l~~ 81 (545)
++|..|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 456666666666666654
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=63.42 E-value=5.4 Score=23.42 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=5.3
Q ss_pred CCCEEeccCCcC
Q 009053 298 KLTSLFISDCKM 309 (545)
Q Consensus 298 ~L~~L~L~~c~~ 309 (545)
+|++|+|++|..
T Consensus 3 ~L~~L~l~~C~~ 14 (26)
T smart00367 3 NLRELDLSGCTN 14 (26)
T ss_pred CCCEeCCCCCCC
Confidence 444444444443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=59.65 E-value=0.2 Score=47.02 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=45.1
Q ss_pred cCCCCCCcEEEecCccCcCCCccCCCCCCCcEEeccCCcCCCcchhhhcCCCCCCEEeccCCcCc
Q 009053 246 LGNLKALEELRVEGTAIRRPPESLGQLSSLQILSLSDNSNLERAPESIRHLSKLTSLFISDCKML 310 (545)
Q Consensus 246 l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~l~~l~~L~~L~L~~c~~l 310 (545)
+..++.|..|+++.|.+..+|...+....+..+++..| +.+..|.+.++.+.++++++.++...
T Consensus 61 ~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhhccCcch
Confidence 44455666777777777777777777777777777777 77777777777777777777766543
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=52.91 E-value=11 Score=22.41 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=8.5
Q ss_pred cCccEEEcCCCCCcc
Q 009053 64 ENLVSLKMPGSKVKQ 78 (545)
Q Consensus 64 ~~L~~L~L~~~~l~~ 78 (545)
.+|++|+|+.|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 355666666665543
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=49.64 E-value=9.3 Score=21.81 Aligned_cols=10 Identities=60% Similarity=0.750 Sum_probs=3.6
Q ss_pred CccEEEeeCC
Q 009053 111 NLEILDLGGC 120 (545)
Q Consensus 111 ~L~~L~L~~c 120 (545)
+|+.|+|++|
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 4444444444
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=36.10 E-value=26 Score=20.95 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=7.8
Q ss_pred CCccEEEecCCCC
Q 009053 87 VNLKKIDLWYSKL 99 (545)
Q Consensus 87 ~~L~~LdLs~~~~ 99 (545)
++|++|||++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3566666666654
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.25 E-value=46 Score=35.66 Aligned_cols=76 Identities=26% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCCCCCCccEEEeCCCCCCcc------cccccCccEEEcCCC--CCc-cccccccCCCCccEEEecCCCCCCCCCC----
Q 009053 39 EGVPFTEVRYFEWHQYPLKTL------DIHAENLVSLKMPGS--KVK-QLWDDVQNLVNLKKIDLWYSKLLTKLPD---- 105 (545)
Q Consensus 39 ~~l~~~~Lr~L~l~~~~l~~l------~~~~~~L~~L~L~~~--~l~-~l~~~~~~l~~L~~LdLs~~~~~~~~p~---- 105 (545)
...| .+..+++++|.+..+ ....++|..|+|++| .+. ..+-.--....|++|-+.+|++.+...+
T Consensus 215 ~n~p--~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 215 ENFP--EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cCCc--ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHH
Q ss_pred CC----CCCCccEEE
Q 009053 106 LS----LAQNLEILD 116 (545)
Q Consensus 106 l~----~l~~L~~L~ 116 (545)
++ .+|+|..||
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Done!